1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 332f856554SMatthew G. Knepley if (copy) { 342f856554SMatthew G. Knepley DMSubDomainHookLink link; 359a2a23afSMatthew G. Knepley 369566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 379a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 382f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 399566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 402f856554SMatthew G. Knepley } 412f856554SMatthew G. Knepley } 422f856554SMatthew G. Knepley } else { 439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 462f856554SMatthew G. Knepley PetscFunctionReturn(0); 472f856554SMatthew G. Knepley } 482f856554SMatthew G. Knepley 49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx) 50d71ae5a4SJacob Faibussowitsch { 519b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *)ctx; 529b6f715bSMatthew G. Knepley 539b6f715bSMatthew G. Knepley PetscFunctionBegin; 549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 559b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 569b6f715bSMatthew G. Knepley } 579b6f715bSMatthew G. Knepley 58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 59d71ae5a4SJacob Faibussowitsch { 609b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 619b6f715bSMatthew G. Knepley PetscObjectId id; 629b6f715bSMatthew G. Knepley PetscContainer container; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 689b6f715bSMatthew G. Knepley if (container) { 699566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 709b6f715bSMatthew G. Knepley } else { 719566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 729566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 769566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 779b6f715bSMatthew G. Knepley } 789b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 82d71ae5a4SJacob Faibussowitsch { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 859b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9146fa42a0SMatthew G. Knepley Not collective 9246fa42a0SMatthew G. Knepley 934165533cSJose E. Roman Input Parameters: 9446fa42a0SMatthew G. Knepley + dm - the DM 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 974165533cSJose E. Roman Output Parameter: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 102db781477SPatrick Sanan .seealso: `DMPlexSetScale()`, `PetscUnit` 10346fa42a0SMatthew G. Knepley @*/ 104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105d71ae5a4SJacob Faibussowitsch { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 110dadcf809SJacob Faibussowitsch PetscValidRealPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 112cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11846fa42a0SMatthew G. Knepley Not collective 11946fa42a0SMatthew G. Knepley 1204165533cSJose E. Roman Input Parameters: 12146fa42a0SMatthew G. Knepley + dm - the DM 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 127db781477SPatrick Sanan .seealso: `DMPlexGetScale()`, `PetscUnit` 12846fa42a0SMatthew G. Knepley @*/ 129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130d71ae5a4SJacob Faibussowitsch { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 136cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 140d71ae5a4SJacob Faibussowitsch { 1419371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 1429371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 1439371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 1449371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 1459371c9d4SSatish Balay }; 146026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 147ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 148026175e5SToby Isaac PetscInt d = ctxInt[1]; 149026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 150026175e5SToby Isaac 151ad917190SMatthew G. Knepley PetscFunctionBegin; 15263a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 153026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 154026175e5SToby Isaac if (d < dim) { 15512adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 156ad917190SMatthew G. Knepley } else { 157026175e5SToby Isaac for (i = 0; i < dim; i++) { 1589371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 159026175e5SToby Isaac } 160026175e5SToby Isaac } 161ad917190SMatthew G. Knepley PetscFunctionReturn(0); 162026175e5SToby Isaac } 163026175e5SToby Isaac 164cc4e42d9SMartin Diehl /*@ 16512adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 166cb1e1211SMatthew G Knepley 167d083f849SBarry Smith Collective on dm 168cb1e1211SMatthew G Knepley 1694165533cSJose E. Roman Input Parameters: 17056cf3b9cSMatthew G. Knepley + dm - the DM 17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 172cb1e1211SMatthew G Knepley 1734165533cSJose E. Roman Output Parameter: 174cb1e1211SMatthew G Knepley . sp - the null space 175cb1e1211SMatthew G Knepley 17612adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 177cb1e1211SMatthew G Knepley 178cb1e1211SMatthew G Knepley Level: advanced 179cb1e1211SMatthew G Knepley 180db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()`, `PCGAMG` 181cb1e1211SMatthew G Knepley @*/ 182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 183d71ae5a4SJacob Faibussowitsch { 18456cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 185cb1e1211SMatthew G Knepley MPI_Comm comm; 186026175e5SToby Isaac Vec mode[6]; 187026175e5SToby Isaac PetscSection section, globalSection; 18856cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 189cb1e1211SMatthew G Knepley 190cb1e1211SMatthew G Knepley PetscFunctionBegin; 1919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1929566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1939566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 1949566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 19563a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 19656cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 1979566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 198cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 199cb1e1211SMatthew G Knepley } 2009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2019566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 2039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &func)); 204b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 2059566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2069566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 2079566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2089566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2099566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 210b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 21156cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 2129566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 213026175e5SToby Isaac for (d = 0; d < m; d++) { 214330485fdSToby Isaac PetscInt ctx[2]; 215026175e5SToby Isaac void *voidctx = (void *)(&ctx[0]); 216cb1e1211SMatthew G Knepley 2179d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 218330485fdSToby Isaac ctx[1] = d; 2199566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, 0.0, func, &voidctx, INSERT_VALUES, mode[d])); 220cb1e1211SMatthew G Knepley } 2213b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 222b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 223b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 224b50a2c0aSJacob Faibussowitsch 2259566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2269566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 227b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 228b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 2299566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 230b50a2c0aSJacob Faibussowitsch } 231cb1e1211SMatthew G Knepley } 2329566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 2339566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 2349566063dSJacob Faibussowitsch PetscCall(PetscFree(func)); 235cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 236cb1e1211SMatthew G Knepley } 237cb1e1211SMatthew G Knepley 238cc4e42d9SMartin Diehl /*@ 23912adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 24012adca46SMatthew G. Knepley 241d083f849SBarry Smith Collective on dm 24212adca46SMatthew G. Knepley 2434165533cSJose E. Roman Input Parameters: 24412adca46SMatthew G. Knepley + dm - the DM 24512adca46SMatthew G. Knepley . nb - The number of bodies 24612adca46SMatthew G. Knepley . label - The DMLabel marking each domain 24712adca46SMatthew G. Knepley . nids - The number of ids per body 24812adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 24912adca46SMatthew G. Knepley 2504165533cSJose E. Roman Output Parameter: 25112adca46SMatthew G. Knepley . sp - the null space 25212adca46SMatthew G. Knepley 25312adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 25412adca46SMatthew G. Knepley 25512adca46SMatthew G. Knepley Level: advanced 25612adca46SMatthew G. Knepley 257db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()` 25812adca46SMatthew G. Knepley @*/ 259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 260d71ae5a4SJacob Faibussowitsch { 26112adca46SMatthew G. Knepley MPI_Comm comm; 26212adca46SMatthew G. Knepley PetscSection section, globalSection; 26312adca46SMatthew G. Knepley Vec *mode; 26412adca46SMatthew G. Knepley PetscScalar *dots; 26512adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 26612adca46SMatthew G. Knepley 26712adca46SMatthew G. Knepley PetscFunctionBegin; 2689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 2699566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 2709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 2719566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2729566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 27412adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 2759566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 2769566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2779566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2789566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2799566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 28012adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 28112adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 28212adca46SMatthew G. Knepley PetscInt ctx[2]; 28312adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 28412adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 28512adca46SMatthew G. Knepley 28612adca46SMatthew G. Knepley ctx[0] = dimEmbed; 28712adca46SMatthew G. Knepley ctx[1] = d; 2889566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 28912adca46SMatthew G. Knepley off += nids[b]; 29012adca46SMatthew G. Knepley } 29112adca46SMatthew G. Knepley } 2923b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 293606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 294b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 2955a0e29b9SJacob Faibussowitsch 2969566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2979566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 2985a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 299b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3009566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 3015a0e29b9SJacob Faibussowitsch } 30212adca46SMatthew G. Knepley } 3039566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 3049566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 3059566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 30612adca46SMatthew G. Knepley PetscFunctionReturn(0); 30712adca46SMatthew G. Knepley } 30812adca46SMatthew G. Knepley 309b29cfa1cSToby Isaac /*@ 310b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 311b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 312b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 313b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 314b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 315b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 316b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 317b29cfa1cSToby Isaac 318b29cfa1cSToby Isaac Input Parameters: 319b29cfa1cSToby Isaac + dm - the DMPlex object 320b29cfa1cSToby Isaac - height - the maximum projection height >= 0 321b29cfa1cSToby Isaac 322b29cfa1cSToby Isaac Level: advanced 323b29cfa1cSToby Isaac 324db781477SPatrick Sanan .seealso: `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 325b29cfa1cSToby Isaac @*/ 326d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 327d71ae5a4SJacob Faibussowitsch { 328b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 329b29cfa1cSToby Isaac 330b29cfa1cSToby Isaac PetscFunctionBegin; 331b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 332b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 333b29cfa1cSToby Isaac PetscFunctionReturn(0); 334b29cfa1cSToby Isaac } 335b29cfa1cSToby Isaac 336b29cfa1cSToby Isaac /*@ 337b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 338b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 339b29cfa1cSToby Isaac 340b29cfa1cSToby Isaac Input Parameters: 341b29cfa1cSToby Isaac . dm - the DMPlex object 342b29cfa1cSToby Isaac 343b29cfa1cSToby Isaac Output Parameters: 344b29cfa1cSToby Isaac . height - the maximum projection height 345b29cfa1cSToby Isaac 346b29cfa1cSToby Isaac Level: intermediate 347b29cfa1cSToby Isaac 348db781477SPatrick Sanan .seealso: `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 349b29cfa1cSToby Isaac @*/ 350d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 351d71ae5a4SJacob Faibussowitsch { 352b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 353b29cfa1cSToby Isaac 354b29cfa1cSToby Isaac PetscFunctionBegin; 355b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 356b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 357b29cfa1cSToby Isaac PetscFunctionReturn(0); 358b29cfa1cSToby Isaac } 359b29cfa1cSToby Isaac 360ca3d3a14SMatthew G. Knepley typedef struct { 361ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 362ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 363ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 364ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 365ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 366ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 367ca3d3a14SMatthew G. Knepley } RotCtx; 368ca3d3a14SMatthew G. Knepley 369ca3d3a14SMatthew G. Knepley /* 370ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 371ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 372ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 373ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 374ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 375ca3d3a14SMatthew G. Knepley */ 376d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 377d71ae5a4SJacob Faibussowitsch { 378ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 379ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 380ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 381ca3d3a14SMatthew G. Knepley 382ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 3839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 384ca3d3a14SMatthew G. Knepley switch (dim) { 385ca3d3a14SMatthew G. Knepley case 2: 3869371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 3879371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 3889371c9d4SSatish Balay rc->R[0] = c1; 3899371c9d4SSatish Balay rc->R[1] = s1; 3909371c9d4SSatish Balay rc->R[2] = -s1; 3919371c9d4SSatish Balay rc->R[3] = c1; 3929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 393b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 394ca3d3a14SMatthew G. Knepley break; 395ca3d3a14SMatthew G. Knepley case 3: 3969371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 3979371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 3989371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 3999371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 4009371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 4019371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 4029371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 4039371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 4049371c9d4SSatish Balay rc->R[2] = s2 * s3; 4059371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 4069371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 4079371c9d4SSatish Balay rc->R[5] = c3 * s2; 4089371c9d4SSatish Balay rc->R[6] = s1 * s2; 4099371c9d4SSatish Balay rc->R[7] = -c1 * s2; 4109371c9d4SSatish Balay rc->R[8] = c2; 4119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 412b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 413ca3d3a14SMatthew G. Knepley break; 414d71ae5a4SJacob Faibussowitsch default: 415d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 416ca3d3a14SMatthew G. Knepley } 417ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 418ca3d3a14SMatthew G. Knepley } 419ca3d3a14SMatthew G. Knepley 420d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 421d71ae5a4SJacob Faibussowitsch { 422ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 423ca3d3a14SMatthew G. Knepley 424ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 4259566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 4269566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 427ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 428ca3d3a14SMatthew G. Knepley } 429ca3d3a14SMatthew G. Knepley 430d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 431d71ae5a4SJacob Faibussowitsch { 432ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 433ca3d3a14SMatthew G. Knepley 434ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 435ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 4369371c9d4SSatish Balay if (l2g) { 4379371c9d4SSatish Balay *A = rc->R; 4389371c9d4SSatish Balay } else { 4399371c9d4SSatish Balay *A = rc->RT; 4409371c9d4SSatish Balay } 441ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 442ca3d3a14SMatthew G. Knepley } 443ca3d3a14SMatthew G. Knepley 444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 445d71ae5a4SJacob Faibussowitsch { 446ec277c0fSMatthew G. Knepley PetscFunctionBegin; 447ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 448ab6a9622SMatthew G. Knepley switch (dim) { 4499371c9d4SSatish Balay case 2: { 45027104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 451ab6a9622SMatthew G. Knepley 4529566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4539371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4549371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4559371c9d4SSatish Balay } break; 4569371c9d4SSatish Balay case 3: { 45727104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 458ab6a9622SMatthew G. Knepley 4599566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4609371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4619371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4629371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 4639371c9d4SSatish Balay } break; 464ab6a9622SMatthew G. Knepley } 465ab6a9622SMatthew G. Knepley #else 4669566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 467ab6a9622SMatthew G. Knepley #endif 468ec277c0fSMatthew G. Knepley PetscFunctionReturn(0); 469ab6a9622SMatthew G. Knepley } 470ab6a9622SMatthew G. Knepley 471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 472d71ae5a4SJacob Faibussowitsch { 473ca3d3a14SMatthew G. Knepley const PetscScalar *A; 474ca3d3a14SMatthew G. Knepley 475ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4769566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 477ca3d3a14SMatthew G. Knepley switch (dim) { 478d71ae5a4SJacob Faibussowitsch case 2: 479d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 480d71ae5a4SJacob Faibussowitsch break; 481d71ae5a4SJacob Faibussowitsch case 3: 482d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 483d71ae5a4SJacob Faibussowitsch break; 484ca3d3a14SMatthew G. Knepley } 485ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 486ca3d3a14SMatthew G. Knepley } 487ca3d3a14SMatthew G. Knepley 488d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 489d71ae5a4SJacob Faibussowitsch { 490ca3d3a14SMatthew G. Knepley PetscSection ts; 491ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 492ca3d3a14SMatthew G. Knepley PetscInt dof; 493ca3d3a14SMatthew G. Knepley 494ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 4969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 4979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 499ca3d3a14SMatthew G. Knepley if (l2g) { 500ca3d3a14SMatthew G. Knepley switch (dof) { 501d71ae5a4SJacob Faibussowitsch case 4: 502d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 503d71ae5a4SJacob Faibussowitsch break; 504d71ae5a4SJacob Faibussowitsch case 9: 505d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 506d71ae5a4SJacob Faibussowitsch break; 507ca3d3a14SMatthew G. Knepley } 508ca3d3a14SMatthew G. Knepley } else { 509ca3d3a14SMatthew G. Knepley switch (dof) { 510d71ae5a4SJacob Faibussowitsch case 4: 511d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 512d71ae5a4SJacob Faibussowitsch break; 513d71ae5a4SJacob Faibussowitsch case 9: 514d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 515d71ae5a4SJacob Faibussowitsch break; 516ca3d3a14SMatthew G. Knepley } 517ca3d3a14SMatthew G. Knepley } 5189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 519ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 520ca3d3a14SMatthew G. Knepley } 521ca3d3a14SMatthew G. Knepley 522d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 523d71ae5a4SJacob Faibussowitsch { 524ca3d3a14SMatthew G. Knepley PetscSection s, ts; 525ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 526ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 527ca3d3a14SMatthew G. Knepley 528ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 5319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 5359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5369566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 5379566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 538ca3d3a14SMatthew G. Knepley if (l2g) { 539ca3d3a14SMatthew G. Knepley switch (fdof) { 540d71ae5a4SJacob Faibussowitsch case 4: 541d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 542d71ae5a4SJacob Faibussowitsch break; 543d71ae5a4SJacob Faibussowitsch case 9: 544d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 545d71ae5a4SJacob Faibussowitsch break; 546ca3d3a14SMatthew G. Knepley } 547ca3d3a14SMatthew G. Knepley switch (gdof) { 548d71ae5a4SJacob Faibussowitsch case 4: 549d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 550d71ae5a4SJacob Faibussowitsch break; 551d71ae5a4SJacob Faibussowitsch case 9: 552d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 553d71ae5a4SJacob Faibussowitsch break; 554ca3d3a14SMatthew G. Knepley } 555ca3d3a14SMatthew G. Knepley } else { 556ca3d3a14SMatthew G. Knepley switch (fdof) { 557d71ae5a4SJacob Faibussowitsch case 4: 558d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 559d71ae5a4SJacob Faibussowitsch break; 560d71ae5a4SJacob Faibussowitsch case 9: 561d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 562d71ae5a4SJacob Faibussowitsch break; 563ca3d3a14SMatthew G. Knepley } 564ca3d3a14SMatthew G. Knepley switch (gdof) { 565d71ae5a4SJacob Faibussowitsch case 4: 566d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 567d71ae5a4SJacob Faibussowitsch break; 568d71ae5a4SJacob Faibussowitsch case 9: 569d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 570d71ae5a4SJacob Faibussowitsch break; 571ca3d3a14SMatthew G. Knepley } 572ca3d3a14SMatthew G. Knepley } 5739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 574ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 575ca3d3a14SMatthew G. Knepley } 576ca3d3a14SMatthew G. Knepley 577d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 578d71ae5a4SJacob Faibussowitsch { 579ca3d3a14SMatthew G. Knepley PetscSection s; 580ca3d3a14SMatthew G. Knepley PetscSection clSection; 581ca3d3a14SMatthew G. Knepley IS clPoints; 582ca3d3a14SMatthew G. Knepley const PetscInt *clp; 583ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 584ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 585ca3d3a14SMatthew G. Knepley 586ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5879566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 5899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 590ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 591ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 5929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 593ca3d3a14SMatthew G. Knepley if (!dof) continue; 5949566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 595ca3d3a14SMatthew G. Knepley d += dof; 596ca3d3a14SMatthew G. Knepley } 597ca3d3a14SMatthew G. Knepley } 5989566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 599ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 600ca3d3a14SMatthew G. Knepley } 601ca3d3a14SMatthew G. Knepley 602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 603d71ae5a4SJacob Faibussowitsch { 604ca3d3a14SMatthew G. Knepley PetscSection s; 605ca3d3a14SMatthew G. Knepley PetscSection clSection; 606ca3d3a14SMatthew G. Knepley IS clPoints; 607ca3d3a14SMatthew G. Knepley const PetscInt *clp; 608ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 6098bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 610ca3d3a14SMatthew G. Knepley 611ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6129566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6149566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 615ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 616ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 6179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 618ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 619ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 6209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 6219566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 622ca3d3a14SMatthew G. Knepley c += gdof; 623ca3d3a14SMatthew G. Knepley } 624ca3d3a14SMatthew G. Knepley } 62563a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 626ca3d3a14SMatthew G. Knepley r += fdof; 627ca3d3a14SMatthew G. Knepley } 628ca3d3a14SMatthew G. Knepley } 62963a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 6309566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 631ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 632ca3d3a14SMatthew G. Knepley } 633ca3d3a14SMatthew G. Knepley 634d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 635d71ae5a4SJacob Faibussowitsch { 636ca3d3a14SMatthew G. Knepley DM tdm; 637ca3d3a14SMatthew G. Knepley Vec tv; 638ca3d3a14SMatthew G. Knepley PetscSection ts, s; 639ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 640ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 641ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 642ca3d3a14SMatthew G. Knepley 643ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6449566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 6459566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 6469566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 6499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6509566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 6519566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 652ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 653ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6549566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 6559566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 656ca3d3a14SMatthew G. Knepley } 657ca3d3a14SMatthew G. Knepley } 6589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 6599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 660ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 661ca3d3a14SMatthew G. Knepley } 662ca3d3a14SMatthew G. Knepley 663ca3d3a14SMatthew G. Knepley /*@ 664ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 665ca3d3a14SMatthew G. Knepley 666ca3d3a14SMatthew G. Knepley Input Parameters: 667ca3d3a14SMatthew G. Knepley + dm - The DM 668ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 669ca3d3a14SMatthew G. Knepley 670ca3d3a14SMatthew G. Knepley Output Parameters: 671ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 672ca3d3a14SMatthew G. Knepley 673c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 674c0f8e1fdSMatthew G. Knepley 675ca3d3a14SMatthew G. Knepley Level: developer 676ca3d3a14SMatthew G. Knepley 677db781477SPatrick Sanan .seealso: `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 678ca3d3a14SMatthew G. Knepley @*/ 679d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 680d71ae5a4SJacob Faibussowitsch { 681ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 682ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 683ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 6849566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 685ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 686ca3d3a14SMatthew G. Knepley } 687ca3d3a14SMatthew G. Knepley 688ca3d3a14SMatthew G. Knepley /*@ 689ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 690ca3d3a14SMatthew G. Knepley 691ca3d3a14SMatthew G. Knepley Input Parameters: 692ca3d3a14SMatthew G. Knepley + dm - The DM 693ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 694ca3d3a14SMatthew G. Knepley 695ca3d3a14SMatthew G. Knepley Output Parameters: 696ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 697ca3d3a14SMatthew G. Knepley 698c0f8e1fdSMatthew G. Knepley Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 699c0f8e1fdSMatthew G. Knepley 700ca3d3a14SMatthew G. Knepley Level: developer 701ca3d3a14SMatthew G. Knepley 702db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 703ca3d3a14SMatthew G. Knepley @*/ 704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 705d71ae5a4SJacob Faibussowitsch { 706ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 707ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 708ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 7099566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 710ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 711ca3d3a14SMatthew G. Knepley } 712ca3d3a14SMatthew G. Knepley 713ca3d3a14SMatthew G. Knepley /*@ 714ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 715ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 716ca3d3a14SMatthew G. Knepley 717ca3d3a14SMatthew G. Knepley Input Parameters: 718ca3d3a14SMatthew G. Knepley + dm - The DM 719ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 720ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 721f0fc11ceSJed Brown - gamma - The third Euler angle 722ca3d3a14SMatthew G. Knepley 723ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 724ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 725ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 726ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 727ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 728ca3d3a14SMatthew G. Knepley 729ca3d3a14SMatthew G. Knepley Level: developer 730ca3d3a14SMatthew G. Knepley 731db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 732ca3d3a14SMatthew G. Knepley @*/ 733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 734d71ae5a4SJacob Faibussowitsch { 735ca3d3a14SMatthew G. Knepley RotCtx *rc; 736ca3d3a14SMatthew G. Knepley PetscInt cdim; 737ca3d3a14SMatthew G. Knepley 738362febeeSStefano Zampini PetscFunctionBegin; 7399566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 7409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 741ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 742ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 743ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 744ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 745ca3d3a14SMatthew G. Knepley rc->dim = cdim; 746ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 747ca3d3a14SMatthew G. Knepley rc->beta = beta; 748ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 7499566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 7509566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 751ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 752ca3d3a14SMatthew G. Knepley } 753ca3d3a14SMatthew G. Knepley 754b278463cSMatthew G. Knepley /*@C 755ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 756b278463cSMatthew G. Knepley 757b278463cSMatthew G. Knepley Input Parameters: 758b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 759b278463cSMatthew G. Knepley . time - The time 760b278463cSMatthew G. Knepley . field - The field to constrain 7611c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7621c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 763b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 764b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 765b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 766b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 767b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 768b278463cSMatthew G. Knepley 769b278463cSMatthew G. Knepley Output Parameter: 770b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 771b278463cSMatthew G. Knepley 772b278463cSMatthew G. Knepley Level: developer 773b278463cSMatthew G. Knepley 774db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 775b278463cSMatthew G. Knepley @*/ 776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 777d71ae5a4SJacob Faibussowitsch { 7780163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 77955f2e967SMatthew G. Knepley void **ctxs; 780d7ddef95SMatthew G. Knepley PetscInt numFields; 781d7ddef95SMatthew G. Knepley 782d7ddef95SMatthew G. Knepley PetscFunctionBegin; 7839566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 7849566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 785d7ddef95SMatthew G. Knepley funcs[field] = func; 786d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7879566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 789d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 790d7ddef95SMatthew G. Knepley } 791d7ddef95SMatthew G. Knepley 792b278463cSMatthew G. Knepley /*@C 793ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 794b278463cSMatthew G. Knepley 795b278463cSMatthew G. Knepley Input Parameters: 796b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 797b278463cSMatthew G. Knepley . time - The time 798b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 799b278463cSMatthew G. Knepley . field - The field to constrain 8001c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8011c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 802b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 803b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 804b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 805b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 806b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 807b278463cSMatthew G. Knepley 808b278463cSMatthew G. Knepley Output Parameter: 809b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 810b278463cSMatthew G. Knepley 811b278463cSMatthew G. Knepley Level: developer 812b278463cSMatthew G. Knepley 813db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 814b278463cSMatthew G. Knepley @*/ 815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 816d71ae5a4SJacob Faibussowitsch { 8179371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 818c60e475cSMatthew G. Knepley void **ctxs; 819c60e475cSMatthew G. Knepley PetscInt numFields; 820c60e475cSMatthew G. Knepley 821c60e475cSMatthew G. Knepley PetscFunctionBegin; 8229566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 824c60e475cSMatthew G. Knepley funcs[field] = func; 825c60e475cSMatthew G. Knepley ctxs[field] = ctx; 8269566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8279566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 828c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 829c60e475cSMatthew G. Knepley } 830c60e475cSMatthew G. Knepley 831b278463cSMatthew G. Knepley /*@C 832*d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 833ece3a9fcSMatthew G. Knepley 834ece3a9fcSMatthew G. Knepley Collective on dm 835ece3a9fcSMatthew G. Knepley 836ece3a9fcSMatthew G. Knepley Input Parameters: 837ece3a9fcSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 838ece3a9fcSMatthew G. Knepley . time - The time 839ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 840ece3a9fcSMatthew G. Knepley . field - The field to constrain 841ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 842ece3a9fcSMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 843ece3a9fcSMatthew G. Knepley . label - The DMLabel defining constrained points 844ece3a9fcSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 845ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 846ece3a9fcSMatthew G. Knepley . func - A pointwise function giving boundary values, the calling sequence is given in DMProjectBdFieldLabelLocal() 847ece3a9fcSMatthew G. Knepley - ctx - An optional user context for bcFunc 848ece3a9fcSMatthew G. Knepley 849ece3a9fcSMatthew G. Knepley Output Parameter: 850ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 851ece3a9fcSMatthew G. Knepley 852ece3a9fcSMatthew G. Knepley Level: developer 853ece3a9fcSMatthew G. Knepley 854db781477SPatrick Sanan .seealso: `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 855ece3a9fcSMatthew G. Knepley @*/ 856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 857d71ae5a4SJacob Faibussowitsch { 8589371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 859ece3a9fcSMatthew G. Knepley void **ctxs; 860ece3a9fcSMatthew G. Knepley PetscInt numFields; 861ece3a9fcSMatthew G. Knepley 862ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8639566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8649566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 865ece3a9fcSMatthew G. Knepley funcs[field] = func; 866ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 8679566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8689566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 869ece3a9fcSMatthew G. Knepley PetscFunctionReturn(0); 870ece3a9fcSMatthew G. Knepley } 871ece3a9fcSMatthew G. Knepley 872ece3a9fcSMatthew G. Knepley /*@C 873b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 874b278463cSMatthew G. Knepley 875b278463cSMatthew G. Knepley Input Parameters: 876b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 877b278463cSMatthew G. Knepley . time - The time 878b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 879b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 880b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 881b278463cSMatthew G. Knepley . field - The field to constrain 8821c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8831c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 884b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 885b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 886b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 887b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 888b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 889b278463cSMatthew G. Knepley 890b278463cSMatthew G. Knepley Output Parameter: 891b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 892b278463cSMatthew G. Knepley 893b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 894b278463cSMatthew G. Knepley 895b278463cSMatthew G. Knepley Level: developer 896b278463cSMatthew G. Knepley 897db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 898b278463cSMatthew G. Knepley @*/ 899d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 900d71ae5a4SJacob Faibussowitsch { 90161f58d28SMatthew G. Knepley PetscDS prob; 902da97024aSMatthew G. Knepley PetscSF sf; 903d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 90420369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 905da97024aSMatthew G. Knepley const PetscInt *leaves; 906d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 907520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 9085f80ce2aSJacob Faibussowitsch PetscErrorCode ierru = 0; 909d7ddef95SMatthew G. Knepley 910d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9119566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 913da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 9149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 9169566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 9179566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 9189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 91920369375SToby Isaac if (cellGeometry) { 9209566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 9219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 92220369375SToby Isaac } 923d7ddef95SMatthew G. Knepley if (Grad) { 924c0a6632aSMatthew G. Knepley PetscFV fv; 925c0a6632aSMatthew G. Knepley 9269566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 9279566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 9289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 9299566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 9309566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 931d7ddef95SMatthew G. Knepley } 9329566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 933d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 934d7ddef95SMatthew G. Knepley IS faceIS; 935d7ddef95SMatthew G. Knepley const PetscInt *faces; 936d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 937d7ddef95SMatthew G. Knepley 9389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 939d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 9409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 942d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 943d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 944640bce14SSatish Balay PetscFVFaceGeom *fg; 945d7ddef95SMatthew G. Knepley 946d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 9479566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 948da97024aSMatthew G. Knepley if (loc >= 0) continue; 9499566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 9509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 951d7ddef95SMatthew G. Knepley if (Grad) { 952640bce14SSatish Balay PetscFVCellGeom *cg; 953640bce14SSatish Balay PetscScalar *cx, *cgrad; 954d7ddef95SMatthew G. Knepley PetscScalar *xG; 955d7ddef95SMatthew G. Knepley PetscReal dx[3]; 956d7ddef95SMatthew G. Knepley PetscInt d; 957d7ddef95SMatthew G. Knepley 9589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 9599566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 9609566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 9619566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 962d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 963d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 9649566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 965d7ddef95SMatthew G. Knepley } else { 966640bce14SSatish Balay PetscScalar *xI; 967d7ddef95SMatthew G. Knepley PetscScalar *xG; 968d7ddef95SMatthew G. Knepley 9699566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 9709566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 971e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 972e735a8a9SMatthew G. Knepley if (ierru) { 9739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 975e735a8a9SMatthew G. Knepley goto cleanup; 976e735a8a9SMatthew G. Knepley } 977d7ddef95SMatthew G. Knepley } 978d7ddef95SMatthew G. Knepley } 9799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 981d7ddef95SMatthew G. Knepley } 982e735a8a9SMatthew G. Knepley cleanup: 9839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 984d7ddef95SMatthew G. Knepley if (Grad) { 9859566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 9869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 987d7ddef95SMatthew G. Knepley } 9889566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 9899566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 9909566063dSJacob Faibussowitsch PetscCall(ierru); 991d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 992d7ddef95SMatthew G. Knepley } 993d7ddef95SMatthew G. Knepley 994d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 995d71ae5a4SJacob Faibussowitsch { 9960c364540SMatthew G. Knepley PetscInt c; 9970c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 9980c364540SMatthew G. Knepley return 0; 9990c364540SMatthew G. Knepley } 10000c364540SMatthew G. Knepley 1001d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1002d71ae5a4SJacob Faibussowitsch { 10030c364540SMatthew G. Knepley PetscObject isZero; 1004e5e52638SMatthew G. Knepley PetscDS prob; 1005d7ddef95SMatthew G. Knepley PetscInt numBd, b; 100655f2e967SMatthew G. Knepley 100755f2e967SMatthew G. Knepley PetscFunctionBegin; 10089566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10099566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10109566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 101155f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 101245480ffeSMatthew G. Knepley PetscWeakForm wf; 1013f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 101445480ffeSMatthew G. Knepley const char *name; 1015d7ddef95SMatthew G. Knepley DMLabel label; 10161c531cf8SMatthew G. Knepley PetscInt field, Nc; 10171c531cf8SMatthew G. Knepley const PetscInt *comps; 1018d7ddef95SMatthew G. Knepley PetscObject obj; 1019d7ddef95SMatthew G. Knepley PetscClassId id; 102045480ffeSMatthew G. Knepley void (*bvfunc)(void); 1021d7ddef95SMatthew G. Knepley PetscInt numids; 1022d7ddef95SMatthew G. Knepley const PetscInt *ids; 102355f2e967SMatthew G. Knepley void *ctx; 102455f2e967SMatthew G. Knepley 10259566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1026f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10279566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1029d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1030c60e475cSMatthew G. Knepley switch (type) { 1031c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 10329371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 103345480ffeSMatthew G. Knepley PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc; 103445480ffeSMatthew G. Knepley 103545480ffeSMatthew G. Knepley if (isZero) func = zero; 10369566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10379566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10389566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10399371c9d4SSatish Balay } break; 10409371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 104145480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc)bvfunc; 104245480ffeSMatthew G. Knepley 10439566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10449566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10459566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10469371c9d4SSatish Balay } break; 1047d71ae5a4SJacob Faibussowitsch default: 1048d71ae5a4SJacob Faibussowitsch break; 1049c60e475cSMatthew G. Knepley } 1050d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 105145480ffeSMatthew G. Knepley { 105245480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 105345480ffeSMatthew G. Knepley 105443ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 10559566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 105645480ffeSMatthew G. Knepley } 105763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 105855f2e967SMatthew G. Knepley } 105955f2e967SMatthew G. Knepley PetscFunctionReturn(0); 106055f2e967SMatthew G. Knepley } 106155f2e967SMatthew G. Knepley 1062d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1063d71ae5a4SJacob Faibussowitsch { 106456cf3b9cSMatthew G. Knepley PetscObject isZero; 106556cf3b9cSMatthew G. Knepley PetscDS prob; 106656cf3b9cSMatthew G. Knepley PetscInt numBd, b; 106756cf3b9cSMatthew G. Knepley 106856cf3b9cSMatthew G. Knepley PetscFunctionBegin; 106956cf3b9cSMatthew G. Knepley if (!locX) PetscFunctionReturn(0); 10709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10719566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 107356cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 107445480ffeSMatthew G. Knepley PetscWeakForm wf; 107556cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 107645480ffeSMatthew G. Knepley const char *name; 107756cf3b9cSMatthew G. Knepley DMLabel label; 107856cf3b9cSMatthew G. Knepley PetscInt field, Nc; 107956cf3b9cSMatthew G. Knepley const PetscInt *comps; 108056cf3b9cSMatthew G. Knepley PetscObject obj; 108156cf3b9cSMatthew G. Knepley PetscClassId id; 108256cf3b9cSMatthew G. Knepley PetscInt numids; 108356cf3b9cSMatthew G. Knepley const PetscInt *ids; 108445480ffeSMatthew G. Knepley void (*bvfunc)(void); 108556cf3b9cSMatthew G. Knepley void *ctx; 108656cf3b9cSMatthew G. Knepley 10879566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 108856cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10899566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 109156cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 109256cf3b9cSMatthew G. Knepley switch (type) { 109356cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 10949371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 109545480ffeSMatthew G. Knepley PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc; 109645480ffeSMatthew G. Knepley 109745480ffeSMatthew G. Knepley if (isZero) func_t = zero; 10989566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10999566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11019371c9d4SSatish Balay } break; 11029371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 110345480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc)bvfunc; 110445480ffeSMatthew G. Knepley 11059566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11069566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11079566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11089371c9d4SSatish Balay } break; 1109d71ae5a4SJacob Faibussowitsch default: 1110d71ae5a4SJacob Faibussowitsch break; 111156cf3b9cSMatthew G. Knepley } 111263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 111356cf3b9cSMatthew G. Knepley } 111456cf3b9cSMatthew G. Knepley PetscFunctionReturn(0); 111556cf3b9cSMatthew G. Knepley } 111656cf3b9cSMatthew G. Knepley 1117f1d73a7aSMatthew G. Knepley /*@ 1118f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1119f1d73a7aSMatthew G. Knepley 1120ed808b8fSJed Brown Not Collective 1121ed808b8fSJed Brown 1122f1d73a7aSMatthew G. Knepley Input Parameters: 1123f1d73a7aSMatthew G. Knepley + dm - The DM 1124f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1125f1d73a7aSMatthew G. Knepley . time - The time 1126f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1127f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1128f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1129f1d73a7aSMatthew G. Knepley 1130f1d73a7aSMatthew G. Knepley Output Parameters: 1131f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1132f1d73a7aSMatthew G. Knepley 1133ed808b8fSJed Brown Level: intermediate 1134f1d73a7aSMatthew G. Knepley 1135db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1136f1d73a7aSMatthew G. Knepley @*/ 1137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1138d71ae5a4SJacob Faibussowitsch { 1139f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1140f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1141064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1142ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1143ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1144ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1145cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 1146f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 1147f1d73a7aSMatthew G. Knepley } 1148f1d73a7aSMatthew G. Knepley 114956cf3b9cSMatthew G. Knepley /*@ 1150a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 115156cf3b9cSMatthew G. Knepley 115256cf3b9cSMatthew G. Knepley Input Parameters: 115356cf3b9cSMatthew G. Knepley + dm - The DM 115456cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 115556cf3b9cSMatthew G. Knepley . time - The time 115656cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 115756cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 115856cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 115956cf3b9cSMatthew G. Knepley 116056cf3b9cSMatthew G. Knepley Output Parameters: 116156cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 116256cf3b9cSMatthew G. Knepley 116356cf3b9cSMatthew G. Knepley Level: developer 116456cf3b9cSMatthew G. Knepley 1165db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()` 116656cf3b9cSMatthew G. Knepley @*/ 1167d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1168d71ae5a4SJacob Faibussowitsch { 116956cf3b9cSMatthew G. Knepley PetscFunctionBegin; 117056cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1171ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1172ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1173ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1174ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1175cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 117656cf3b9cSMatthew G. Knepley PetscFunctionReturn(0); 117756cf3b9cSMatthew G. Knepley } 117856cf3b9cSMatthew G. Knepley 1179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1180d71ae5a4SJacob Faibussowitsch { 1181574a98acSMatthew G. Knepley Vec localX; 1182574a98acSMatthew G. Knepley 1183574a98acSMatthew G. Knepley PetscFunctionBegin; 11849566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 11859566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 11869566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 11879566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 11889566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 11899566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1190574a98acSMatthew G. Knepley PetscFunctionReturn(0); 1191574a98acSMatthew G. Knepley } 1192574a98acSMatthew G. Knepley 1193574a98acSMatthew G. Knepley /*@C 1194ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1195574a98acSMatthew G. Knepley 1196d083f849SBarry Smith Collective on dm 1197c0f8e1fdSMatthew G. Knepley 1198574a98acSMatthew G. Knepley Input Parameters: 1199574a98acSMatthew G. Knepley + dm - The DM 1200574a98acSMatthew G. Knepley . time - The time 1201574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1202574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1203574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1204574a98acSMatthew G. Knepley 1205574a98acSMatthew G. Knepley Output Parameter: 1206574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1207574a98acSMatthew G. Knepley 1208574a98acSMatthew G. Knepley Level: developer 1209574a98acSMatthew G. Knepley 1210db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1211574a98acSMatthew G. Knepley @*/ 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1213d71ae5a4SJacob Faibussowitsch { 12140f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1215ca3d3a14SMatthew G. Knepley DM tdm; 1216ca3d3a14SMatthew G. Knepley Vec tv; 1217cb1e1211SMatthew G Knepley PetscSection section; 1218c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 12194bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 122015496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 12214bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1222cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 12237318780aSToby Isaac const PetscReal *quadWeights; 1224412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1225ca3d3a14SMatthew G. Knepley PetscBool transform; 1226cb1e1211SMatthew G Knepley 1227cb1e1211SMatthew G Knepley PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 12302a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 12319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 12329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 12339566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 12349566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 12359566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1236cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 123715496722SMatthew G. Knepley PetscObject obj; 123815496722SMatthew G. Knepley PetscClassId id; 1239c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1240c5bbbd5bSMatthew G. Knepley 12419566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 124315496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 124415496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 124515496722SMatthew G. Knepley 12469566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 12479566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 124815496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 124915496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 125015496722SMatthew G. Knepley 12519566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 12529566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 125363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1254c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1255cb1e1211SMatthew G Knepley } 12569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 125763a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 12589566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 12599566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 12609566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1261cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1262a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1263cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 12649c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1265cb1e1211SMatthew G Knepley 12669566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 12679566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1268cb1e1211SMatthew G Knepley 126915496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 127015496722SMatthew G. Knepley PetscObject obj; 127115496722SMatthew G. Knepley PetscClassId id; 1272c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 127315496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1274cb1e1211SMatthew G Knepley 12759566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 12779371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 12789371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 12799371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 12809371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 12819371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 12829371c9d4SSatish Balay Nb = 1; 12839371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1284cb1e1211SMatthew G Knepley if (debug) { 1285cb1e1211SMatthew G Knepley char title[1024]; 128663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 12879566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1288cb1e1211SMatthew G Knepley } 12897318780aSToby Isaac for (q = 0; q < Nq; ++q) { 12902a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1291d0609cedSBarry Smith PetscErrorCode ierr; 12922a4e142eSMatthew G. Knepley 12932a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 12942a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 12952a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 12962a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 129763a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1298d3a7d86cSMatthew G. Knepley if (transform) { 1299d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 13009566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1301d3a7d86cSMatthew G. Knepley } else { 1302d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1303d3a7d86cSMatthew G. Knepley } 13049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1305ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1306e735a8a9SMatthew G. Knepley if (ierr) { 13079566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13089566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13099566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1310e735a8a9SMatthew G. Knepley } 13119566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 13129566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 13139566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 13142df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 131515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1316beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 13179371c9d4SSatish Balay if (debug) 13189371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.), 13199371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 13204bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1321cb1e1211SMatthew G Knepley } 1322cb1e1211SMatthew G Knepley } 13239c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1324beaa55a6SMatthew G. Knepley qc += Nc; 1325cb1e1211SMatthew G Knepley } 13269566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13279566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1328cb1e1211SMatthew G Knepley localDiff += elemDiff; 1329cb1e1211SMatthew G Knepley } 13309566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 13311c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1332cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 1333cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1334cb1e1211SMatthew G Knepley } 1335cb1e1211SMatthew G Knepley 1336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1337d71ae5a4SJacob Faibussowitsch { 13380f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1339ca3d3a14SMatthew G. Knepley DM tdm; 1340cb1e1211SMatthew G Knepley PetscSection section; 134140e14135SMatthew G. Knepley PetscQuadrature quad; 1342ca3d3a14SMatthew G. Knepley Vec localX, tv; 13439c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13442a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 13454bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 13464bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 134740e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1348485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1349ca3d3a14SMatthew G. Knepley PetscBool transform; 1350cb1e1211SMatthew G Knepley 1351cb1e1211SMatthew G Knepley PetscFunctionBegin; 13529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13539566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13544bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 13559566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13579566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13589566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13599566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13609566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13619566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 13629566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1363652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 13640f2d7e86SMatthew G. Knepley PetscFE fe; 136540e14135SMatthew G. Knepley PetscInt Nc; 1366652b88e8SMatthew G. Knepley 13679566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 13689566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 13699566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 137040e14135SMatthew G. Knepley numComponents += Nc; 1371652b88e8SMatthew G. Knepley } 13729566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 137363a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 13749566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 13759566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * Nq, &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 13769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 137740e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 137840e14135SMatthew G. Knepley PetscScalar *x = NULL; 137940e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 13809c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1381652b88e8SMatthew G. Knepley 13829566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 13839566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 138440e14135SMatthew G. Knepley 13859c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 13860f2d7e86SMatthew G. Knepley PetscFE fe; 138751259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 13889c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 138940e14135SMatthew G. Knepley 13909566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 13919566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 13929566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 139340e14135SMatthew G. Knepley if (debug) { 139440e14135SMatthew G. Knepley char title[1024]; 13959566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 13969566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1397652b88e8SMatthew G. Knepley } 13989c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 13992a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1400d0609cedSBarry Smith PetscErrorCode ierr; 14012a4e142eSMatthew G. Knepley 14022a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 14032a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 14042a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 14052a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 14062df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1407d3a7d86cSMatthew G. Knepley if (transform) { 1408d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 14099566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1410d3a7d86cSMatthew G. Knepley } else { 1411d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1412d3a7d86cSMatthew G. Knepley } 14139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 14144bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1415e735a8a9SMatthew G. Knepley if (ierr) { 14169566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14179566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14189566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1419e735a8a9SMatthew G. Knepley } 14209566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 14219566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 14224bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 14234bee2e38SMatthew G. Knepley if (n) { 14244bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 14254bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 14264bee2e38SMatthew G. Knepley PetscInt d; 14274bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 14284bee2e38SMatthew G. Knepley interpolant[fc] = sum; 14294bee2e38SMatthew G. Knepley } 14304bee2e38SMatthew G. Knepley } 14319c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1432beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 143363a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 14344bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 143540e14135SMatthew G. Knepley } 143640e14135SMatthew G. Knepley } 14379c3cf19fSMatthew G. Knepley fieldOffset += Nb; 14389c3cf19fSMatthew G. Knepley qc += Nc; 143940e14135SMatthew G. Knepley } 14409566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 144163a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 144240e14135SMatthew G. Knepley localDiff += elemDiff; 144340e14135SMatthew G. Knepley } 14449566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 14459566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 144740e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 1448cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1449cb1e1211SMatthew G Knepley } 1450cb1e1211SMatthew G Knepley 1451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1452d71ae5a4SJacob Faibussowitsch { 14530f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1454ca3d3a14SMatthew G. Knepley DM tdm; 1455083401c6SMatthew G. Knepley DMLabel depthLabel; 145673d901b8SMatthew G. Knepley PetscSection section; 1457ca3d3a14SMatthew G. Knepley Vec localX, tv; 145873d901b8SMatthew G. Knepley PetscReal *localDiff; 1459083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1460ca3d3a14SMatthew G. Knepley PetscBool transform; 146173d901b8SMatthew G. Knepley 146273d901b8SMatthew G. Knepley PetscFunctionBegin; 14639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 14649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 14659566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 14669566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 14679566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 14689566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14699566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 14709566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 14719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 14729566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1473083401c6SMatthew G. Knepley 14749566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 14759566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 14769566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 14779566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 14789566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1480083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1481083401c6SMatthew G. Knepley PetscDS ds; 1482083401c6SMatthew G. Knepley DMLabel label; 1483083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1484083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1485083401c6SMatthew G. Knepley PetscQuadrature quad; 1486083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1487083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1488083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1489083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14905fedec97SMatthew G. Knepley PetscBool isCohesive; 1491083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 149273d901b8SMatthew G. Knepley 14939566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 14949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 14959566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 14969566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 14979566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 14989566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 14999566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 150063a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 15019566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1502083401c6SMatthew G. Knepley if (!label) { 15039566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1504083401c6SMatthew G. Knepley } else { 15059566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 15069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 15079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1508083401c6SMatthew G. Knepley } 150973d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1510083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 151173d901b8SMatthew G. Knepley PetscScalar *x = NULL; 15125fedec97SMatthew G. Knepley const PetscInt *cone; 15135fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 151473d901b8SMatthew G. Knepley 15159566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1516083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 15175fedec97SMatthew G. Knepley if (isCohesive) { 15189566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 15199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 152096959cd1SMatthew G. Knepley } else { 15219566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 152296959cd1SMatthew G. Knepley } 15239566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x)); 15245fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 152515496722SMatthew G. Knepley PetscObject obj; 152615496722SMatthew G. Knepley PetscClassId id; 1527083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 152815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 152915496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 15305fedec97SMatthew G. Knepley PetscBool cohesive; 153115496722SMatthew G. Knepley 15329566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 15335fedec97SMatthew G. Knepley if (isCohesive && !cohesive) continue; 15349566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 15359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 15369371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 15379371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 15389371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 15399371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 15409371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 15419371c9d4SSatish Balay Nb = 1; 15429371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 154373d901b8SMatthew G. Knepley if (debug) { 154473d901b8SMatthew G. Knepley char title[1024]; 154563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 15469566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 154773d901b8SMatthew G. Knepley } 15487318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15492a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1550d0609cedSBarry Smith PetscErrorCode ierr; 15512a4e142eSMatthew G. Knepley 15522a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1553083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1554083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 15552a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 155663a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1557d3a7d86cSMatthew G. Knepley if (transform) { 1558083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 15599566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1560d3a7d86cSMatthew G. Knepley } else { 1561083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1562d3a7d86cSMatthew G. Knepley } 15632df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1564083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1565e735a8a9SMatthew G. Knepley if (ierr) { 15669566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 15679566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15689566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1569e735a8a9SMatthew G. Knepley } 15709566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 157196959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 15729566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 15739566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 157463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 157515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1576beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 15779371c9d4SSatish Balay if (debug) 15789371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.), 15799371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 15804bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 158173d901b8SMatthew G. Knepley } 158273d901b8SMatthew G. Knepley } 1583083401c6SMatthew G. Knepley fOff += Nb; 15849c3cf19fSMatthew G. Knepley qc += Nc; 1585083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 158663a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 158773d901b8SMatthew G. Knepley } 15889566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1589083401c6SMatthew G. Knepley } 1590083401c6SMatthew G. Knepley if (label) { 15919566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 15929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1593083401c6SMatthew G. Knepley } 15949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 159673d901b8SMatthew G. Knepley } 15979566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 15999566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1600083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 160173d901b8SMatthew G. Knepley PetscFunctionReturn(0); 160273d901b8SMatthew G. Knepley } 160373d901b8SMatthew G. Knepley 1604e729f68cSMatthew G. Knepley /*@C 1605e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1606e729f68cSMatthew G. Knepley 1607d083f849SBarry Smith Collective on dm 1608c0f8e1fdSMatthew G. Knepley 1609e729f68cSMatthew G. Knepley Input Parameters: 1610e729f68cSMatthew G. Knepley + dm - The DM 16110163fd50SMatthew G. Knepley . time - The time 1612ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1613e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1614e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1615e729f68cSMatthew G. Knepley 1616e729f68cSMatthew G. Knepley Output Parameter: 1617e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1618e729f68cSMatthew G. Knepley 1619e729f68cSMatthew G. Knepley Level: developer 1620e729f68cSMatthew G. Knepley 1621db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1622e729f68cSMatthew G. Knepley @*/ 1623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1624d71ae5a4SJacob Faibussowitsch { 1625e729f68cSMatthew G. Knepley PetscSection section; 1626e729f68cSMatthew G. Knepley PetscQuadrature quad; 1627e729f68cSMatthew G. Knepley Vec localX; 16284bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1629e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 16304bee2e38SMatthew G. Knepley PetscReal *coords; 1631e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1632485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1633e729f68cSMatthew G. Knepley 1634e729f68cSMatthew G. Knepley PetscFunctionBegin; 16359566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 16369566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16379566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 16389566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 16409566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16419566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16429566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16439566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1644e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1645e729f68cSMatthew G. Knepley PetscObject obj; 1646e729f68cSMatthew G. Knepley PetscClassId id; 1647e729f68cSMatthew G. Knepley PetscInt Nc; 1648e729f68cSMatthew G. Knepley 16499566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1651e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1652e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1653e729f68cSMatthew G. Knepley 16549566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 16559566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1656e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1657e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1658e729f68cSMatthew G. Knepley 16599566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 16609566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 166163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1662e729f68cSMatthew G. Knepley numComponents += Nc; 1663e729f68cSMatthew G. Knepley } 16649566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 166563a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 16669566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 16679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1668e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1669e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 16706f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 16719c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1672e729f68cSMatthew G. Knepley 16739566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 16749566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1675e729f68cSMatthew G. Knepley 1676e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1677e729f68cSMatthew G. Knepley PetscObject obj; 1678e729f68cSMatthew G. Knepley PetscClassId id; 1679e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1680e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1681e729f68cSMatthew G. Knepley 16829566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 16849371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 16859371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 16869371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 16879371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 16889371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 16899371c9d4SSatish Balay Nb = 1; 16909371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 169123f34ed2SToby Isaac if (funcs[field]) { 16927318780aSToby Isaac for (q = 0; q < Nq; ++q) { 16932a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 16942a4e142eSMatthew G. Knepley 16952a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 16962a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 16972a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 16982a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 169963a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 17009566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1701c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1702e735a8a9SMatthew G. Knepley if (ierr) { 17039566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17049566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17059566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1706e735a8a9SMatthew G. Knepley } 1707c3e24edfSBarry Smith #endif 17089566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 17099566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 171063a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1711e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1712beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 17134bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1714e729f68cSMatthew G. Knepley } 1715e729f68cSMatthew G. Knepley } 171623f34ed2SToby Isaac } 1717beaa55a6SMatthew G. Knepley fieldOffset += Nb; 17189c3cf19fSMatthew G. Knepley qc += Nc; 1719e729f68cSMatthew G. Knepley } 17209566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17219566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1722e729f68cSMatthew G. Knepley } 17239566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17249566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17259566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 1726e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1727e729f68cSMatthew G. Knepley } 1728e729f68cSMatthew G. Knepley 17295f0b18bfSMatthew G. Knepley /*@ 17305f0b18bfSMatthew G. Knepley DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1, and stores it in a Vec. 17315f0b18bfSMatthew G. Knepley 17325f0b18bfSMatthew G. Knepley Collective on dm 17335f0b18bfSMatthew G. Knepley 17345f0b18bfSMatthew G. Knepley Input Parameters: 17355f0b18bfSMatthew G. Knepley + dm - The DM 17365f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 17375f0b18bfSMatthew G. Knepley 17385f0b18bfSMatthew G. Knepley Output Parameter: 17395f0b18bfSMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the function 17405f0b18bfSMatthew G. Knepley 17415f0b18bfSMatthew G. Knepley Notes: 17425f0b18bfSMatthew G. Knepley u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 17435f0b18bfSMatthew G. Knepley 17445f0b18bfSMatthew G. Knepley Level: developer 17455f0b18bfSMatthew G. Knepley 1746db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 17475f0b18bfSMatthew G. Knepley @*/ 1748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 1749d71ae5a4SJacob Faibussowitsch { 17505f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 17515f0b18bfSMatthew G. Knepley DM dmc; 17525f0b18bfSMatthew G. Knepley PetscQuadrature quad; 17535f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 17545f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 17555f0b18bfSMatthew G. Knepley PetscReal *coords; 17565f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 17575f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 17585f0b18bfSMatthew G. Knepley 17595f0b18bfSMatthew G. Knepley PetscFunctionBegin; 17609566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 17619566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 17629566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 17639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 17655f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 17669566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17675f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 17685f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 17695f0b18bfSMatthew G. Knepley PetscObject obj; 17705f0b18bfSMatthew G. Knepley PetscClassId id; 17715f0b18bfSMatthew G. Knepley PetscInt fNc; 17725f0b18bfSMatthew G. Knepley 17739566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 17749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17755f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 17765f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 17775f0b18bfSMatthew G. Knepley 17789566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 17799566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 17805f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 17815f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 17825f0b18bfSMatthew G. Knepley 17839566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 17849566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 178563a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 17865f0b18bfSMatthew G. Knepley Nc += fNc; 17875f0b18bfSMatthew G. Knepley } 17889566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 178963a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 17909566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 17919566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 17929566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 17935f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 17945f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 17955f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 17965f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 17975f0b18bfSMatthew G. Knepley 17989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 17999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18005f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 18015f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 18025f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 18035f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 18045f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 18055f0b18bfSMatthew G. Knepley PetscInt foff = 0; 18065f0b18bfSMatthew G. Knepley 18075f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 18089566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 18099566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 18105f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 18115f0b18bfSMatthew G. Knepley PetscObject obj; 18125f0b18bfSMatthew G. Knepley PetscClassId id; 18135f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 18145f0b18bfSMatthew G. Knepley 18159566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 18169566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 18179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18189371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 18199371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 18209371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 18219371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 18229371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 18239371c9d4SSatish Balay Nb = 1; 18249371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18255f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 18265f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 18275f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 18285f0b18bfSMatthew G. Knepley 18295f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 18305f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 18315f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 18325f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 183363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 18349566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 183563a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18365f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 18375f0b18bfSMatthew G. Knepley vol += wt; 18385f0b18bfSMatthew G. Knepley } 18395f0b18bfSMatthew G. Knepley foff += Nb; 18405f0b18bfSMatthew G. Knepley } 18419566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 18425f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 18435f0b18bfSMatthew G. Knepley volsum += vol; 18445f0b18bfSMatthew G. Knepley if (debug) { 18459566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 18465f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 18479566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 18489566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 18495f0b18bfSMatthew G. Knepley } 18509566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 18515f0b18bfSMatthew G. Knepley } 18525f0b18bfSMatthew G. Knepley } 18535f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 18549566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18559566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 18565f0b18bfSMatthew G. Knepley } 18579566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18585f0b18bfSMatthew G. Knepley PetscFunctionReturn(0); 18595f0b18bfSMatthew G. Knepley } 18605f0b18bfSMatthew G. Knepley 18615f0b18bfSMatthew G. Knepley /*@ 18621555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 18631555c271SMatthew G. Knepley 1864d083f849SBarry Smith Collective on dm 1865c0f8e1fdSMatthew G. Knepley 18661555c271SMatthew G. Knepley Input Parameters: 18671555c271SMatthew G. Knepley + dm - The DM 18685f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 18691555c271SMatthew G. Knepley 18701555c271SMatthew G. Knepley Output Parameter: 18711555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient 18721555c271SMatthew G. Knepley 187395452b02SPatrick Sanan Notes: 18741555c271SMatthew G. Knepley \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 18751555c271SMatthew G. Knepley 18761555c271SMatthew G. Knepley Level: developer 18771555c271SMatthew G. Knepley 1878db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 18791555c271SMatthew G. Knepley @*/ 1880d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 1881d71ae5a4SJacob Faibussowitsch { 1882db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1883db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 18841555c271SMatthew G. Knepley DM dmC; 18851555c271SMatthew G. Knepley PetscQuadrature quad; 18861555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 18874bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 18884bee2e38SMatthew G. Knepley PetscReal *coords; 18891555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1890485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 18911555c271SMatthew G. Knepley 18921555c271SMatthew G. Knepley PetscFunctionBegin; 18939566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 18949566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 18959566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 18969566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 18984bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 18999566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 19005f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 19011555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 19021555c271SMatthew G. Knepley PetscObject obj; 19031555c271SMatthew G. Knepley PetscClassId id; 19041555c271SMatthew G. Knepley PetscInt Nc; 19051555c271SMatthew G. Knepley 19069566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19081555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 19091555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 19101555c271SMatthew G. Knepley 19119566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 19129566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 19131555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 19141555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 19151555c271SMatthew G. Knepley 19169566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 19179566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 191863a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19191555c271SMatthew G. Knepley numComponents += Nc; 19201555c271SMatthew G. Knepley } 19219566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 192263a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 19239566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 19249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19259566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19261555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 19271555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 19281555c271SMatthew G. Knepley PetscInt *star = NULL; 19291555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 19301555c271SMatthew G. Knepley 19319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 19329566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19331555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 19341555c271SMatthew G. Knepley const PetscInt cell = star[st]; 19351555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 19361555c271SMatthew G. Knepley PetscScalar *x = NULL; 19371555c271SMatthew G. Knepley PetscReal vol = 0.0; 19381555c271SMatthew G. Knepley 19391555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 19409566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19419566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 19421555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 19431555c271SMatthew G. Knepley PetscObject obj; 19441555c271SMatthew G. Knepley PetscClassId id; 19451555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 19461555c271SMatthew G. Knepley 19479566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 19489566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19509371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 19519371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 19529371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 19539371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 19549371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 19559371c9d4SSatish Balay Nb = 1; 19569371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19571555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 19582a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 19592a4e142eSMatthew G. Knepley 19602a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19612a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 19622a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 19632a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 196463a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 19659566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 196663a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19671555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 196853d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 19691555c271SMatthew G. Knepley 19704bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 19711555c271SMatthew G. Knepley } 19724bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 19731555c271SMatthew G. Knepley } 19741555c271SMatthew G. Knepley fieldOffset += Nb; 19751555c271SMatthew G. Knepley qc += Nc; 19761555c271SMatthew G. Knepley } 19779566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 1978f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1979ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 1980f8527842SMatthew G. Knepley } 1981f8527842SMatthew G. Knepley volsum += vol; 1982db1066baSMatthew G. Knepley if (debug) { 19839566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 19841555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 19851555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 19869566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 19879566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 19881555c271SMatthew G. Knepley } 19891555c271SMatthew G. Knepley } 19909566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 1991db1066baSMatthew G. Knepley } 19921555c271SMatthew G. Knepley } 19931555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 19941555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 19951555c271SMatthew G. Knepley } 19969566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19979566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 19981555c271SMatthew G. Knepley } 19999566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 20001555c271SMatthew G. Knepley PetscFunctionReturn(0); 20011555c271SMatthew G. Knepley } 20021555c271SMatthew G. Knepley 2003d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2004d71ae5a4SJacob Faibussowitsch { 2005338f77d5SMatthew G. Knepley DM dmAux = NULL; 200661aaff12SToby Isaac PetscDS prob, probAux = NULL; 200773d901b8SMatthew G. Knepley PetscSection section, sectionAux; 2008338f77d5SMatthew G. Knepley Vec locX, locA; 2009c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2010c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2011338f77d5SMatthew G. Knepley /* DS */ 2012338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2013338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 2014338f77d5SMatthew G. Knepley PetscScalar *u, *a; 2015338f77d5SMatthew G. Knepley const PetscScalar *constants; 2016338f77d5SMatthew G. Knepley /* Geometry */ 2017c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2018338f77d5SMatthew G. Knepley DM dmGrad; 2019c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2020338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2021b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2022338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2023b7260050SToby Isaac PetscInt maxDegree; 2024c330f8ffSToby Isaac DMField coordField; 2025c330f8ffSToby Isaac IS cellIS; 202673d901b8SMatthew G. Knepley 202773d901b8SMatthew G. Knepley PetscFunctionBegin; 20289566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 20299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20319566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2032338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2033b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2034b5a3613cSMatthew G. Knepley PetscObject obj; 2035b5a3613cSMatthew G. Knepley PetscClassId id; 2036b5a3613cSMatthew G. Knepley 20379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2039338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2040338f77d5SMatthew G. Knepley } 2041338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 20429566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 20439566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 20449566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 20459566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 2046338f77d5SMatthew G. Knepley /* Read DS information */ 20479566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 20489566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 20499566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 20509566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 20519566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2052338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 20539566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 20549a2a23afSMatthew G. Knepley if (locA) { 20559566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 20569566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 20579566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 20589566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 20599566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 20609566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2061338f77d5SMatthew G. Knepley } 2062338f77d5SMatthew G. Knepley /* Allocate data arrays */ 20639566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 20649566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2065338f77d5SMatthew G. Knepley /* Read out geometry */ 20669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 20679566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2068b7260050SToby Isaac if (maxDegree <= 1) { 20699566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 207048a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM)); 2071b5a3613cSMatthew G. Knepley } 2072b5a3613cSMatthew G. Knepley if (useFVM) { 2073338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2074b5a3613cSMatthew G. Knepley Vec grad; 2075b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2076b5a3613cSMatthew G. Knepley PetscBool compGrad; 2077b5a3613cSMatthew G. Knepley 2078338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2079338f77d5SMatthew G. Knepley PetscObject obj; 2080338f77d5SMatthew G. Knepley PetscClassId id; 2081338f77d5SMatthew G. Knepley 20829566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 20849371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 20859371c9d4SSatish Balay fv = (PetscFV)obj; 20869371c9d4SSatish Balay break; 20879371c9d4SSatish Balay } 2088338f77d5SMatthew G. Knepley } 20899566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 20909566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 20919566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 20929566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 20939566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 20949566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2095b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 20969566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 20979566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 20989566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2099b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 21009566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 21019566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 21029566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 21039566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2104b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 21059566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 21069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2107b5a3613cSMatthew G. Knepley } 2108338f77d5SMatthew G. Knepley /* Read out data from inputs */ 210973d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 211073d901b8SMatthew G. Knepley PetscScalar *x = NULL; 211173d901b8SMatthew G. Knepley PetscInt i; 211273d901b8SMatthew G. Knepley 21139566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 21140f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 21159566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 211673d901b8SMatthew G. Knepley if (dmAux) { 21179566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x)); 21180f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 21199566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x)); 212073d901b8SMatthew G. Knepley } 212173d901b8SMatthew G. Knepley } 2122338f77d5SMatthew G. Knepley /* Do integration for each field */ 212373d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2124c1f031eeSMatthew G. Knepley PetscObject obj; 2125c1f031eeSMatthew G. Knepley PetscClassId id; 2126c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 212773d901b8SMatthew G. Knepley 21289566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 21299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2130c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2131c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2132c1f031eeSMatthew G. Knepley PetscQuadrature q; 2133c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2134c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2135c1f031eeSMatthew G. Knepley 21369566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 21379566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 21389566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 21399566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2140c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 214173d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 21429566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 214373d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 214473d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 214573d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 214673d901b8SMatthew G. Knepley offset = numCells - Nr; 214748a46eb9SPierre Jolivet if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM)); 21489566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 21499566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 21509566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 21519566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf])); 21529566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 215348a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2154c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2155c1f031eeSMatthew G. Knepley PetscInt foff; 2156420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2157b69edc29SMatthew G. Knepley PetscScalar lint; 2158c1f031eeSMatthew G. Knepley 21599566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 21609566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2161c1f031eeSMatthew G. Knepley if (obj_func) { 2162c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2163b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2164b5a3613cSMatthew G. Knepley 21659566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 2166338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2167338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 216873d901b8SMatthew G. Knepley } 2169c1f031eeSMatthew G. Knepley } 217063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2171c1f031eeSMatthew G. Knepley } 2172338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2173b5a3613cSMatthew G. Knepley if (useFVM) { 21749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 21759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 21769566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 21779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 21789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 21799566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2180b5a3613cSMatthew G. Knepley } 21819566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 21829566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2183338f77d5SMatthew G. Knepley /* Cleanup */ 218448a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 21859566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 21869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 21879566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 2188338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 2189338f77d5SMatthew G. Knepley } 2190338f77d5SMatthew G. Knepley 2191338f77d5SMatthew G. Knepley /*@ 2192338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2193338f77d5SMatthew G. Knepley 2194338f77d5SMatthew G. Knepley Input Parameters: 2195338f77d5SMatthew G. Knepley + dm - The mesh 2196338f77d5SMatthew G. Knepley . X - Global input vector 2197338f77d5SMatthew G. Knepley - user - The user context 2198338f77d5SMatthew G. Knepley 2199338f77d5SMatthew G. Knepley Output Parameter: 2200338f77d5SMatthew G. Knepley . integral - Integral for each field 2201338f77d5SMatthew G. Knepley 2202338f77d5SMatthew G. Knepley Level: developer 2203338f77d5SMatthew G. Knepley 2204db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()` 2205338f77d5SMatthew G. Knepley @*/ 2206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2207d71ae5a4SJacob Faibussowitsch { 2208338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2209b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2210412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2211338f77d5SMatthew G. Knepley 2212338f77d5SMatthew G. Knepley PetscFunctionBegin; 2213338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2214338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2215dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 3); 22169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22179566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22189566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22199566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2220338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22219566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 22229566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2223338f77d5SMatthew G. Knepley /* Sum up values */ 2224338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2225338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2226338f77d5SMatthew G. Knepley 22279566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2228b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2229338f77d5SMatthew G. Knepley } 22301c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 223173d901b8SMatthew G. Knepley if (mesh->printFEM) { 22329566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 22339566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 22349566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 223573d901b8SMatthew G. Knepley } 22369566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 22379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 2238338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 2239338f77d5SMatthew G. Knepley } 2240338f77d5SMatthew G. Knepley 2241338f77d5SMatthew G. Knepley /*@ 2242338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2243338f77d5SMatthew G. Knepley 2244338f77d5SMatthew G. Knepley Input Parameters: 2245338f77d5SMatthew G. Knepley + dm - The mesh 2246338f77d5SMatthew G. Knepley . X - Global input vector 2247338f77d5SMatthew G. Knepley - user - The user context 2248338f77d5SMatthew G. Knepley 2249338f77d5SMatthew G. Knepley Output Parameter: 2250338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 2251338f77d5SMatthew G. Knepley 2252338f77d5SMatthew G. Knepley Level: developer 2253338f77d5SMatthew G. Knepley 2254db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()` 2255338f77d5SMatthew G. Knepley @*/ 2256d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2257d71ae5a4SJacob Faibussowitsch { 2258338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2259338f77d5SMatthew G. Knepley DM dmF; 2260338f77d5SMatthew G. Knepley PetscSection sectionF; 2261338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 2262412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2263338f77d5SMatthew G. Knepley 2264338f77d5SMatthew G. Knepley PetscFunctionBegin; 2265338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2266338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2267338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 22689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22699566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22709566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2272338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22739566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 22749566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2275338f77d5SMatthew G. Knepley /* Put values in F*/ 22769566063dSJacob Faibussowitsch PetscCall(VecGetDM(F, &dmF)); 22779566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmF, §ionF)); 22789566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 2279338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2280338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2281338f77d5SMatthew G. Knepley PetscInt dof, off; 2282338f77d5SMatthew G. Knepley 22839566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 22849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 22859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 228663a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2287338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2288338f77d5SMatthew G. Knepley } 22899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 22909566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 22919566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 229273d901b8SMatthew G. Knepley PetscFunctionReturn(0); 229373d901b8SMatthew G. Knepley } 229473d901b8SMatthew G. Knepley 2295d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2296d71ae5a4SJacob Faibussowitsch { 22979b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2298a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 22999b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 23009b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 23019b6f715bSMatthew G. Knepley Vec locA = NULL; 23029b6f715bSMatthew G. Knepley DMField coordField; 23039b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 23049b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 23059b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 230664c72086SMatthew G. Knepley const PetscScalar *constants; 23079b6f715bSMatthew G. Knepley PetscInt numConstants, f; 230864c72086SMatthew G. Knepley 230964c72086SMatthew G. Knepley PetscFunctionBegin; 23109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 23119566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 23129566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 23139566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 23149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 231564c72086SMatthew G. Knepley /* Determine which discretizations we have */ 23169b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 231764c72086SMatthew G. Knepley PetscObject obj; 231864c72086SMatthew G. Knepley PetscClassId id; 231964c72086SMatthew G. Knepley 23209566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 23219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 232263a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 232364c72086SMatthew G. Knepley } 232464c72086SMatthew G. Knepley /* Read DS information */ 23259566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 23269566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 23279566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 23289566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 232964c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 23309566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 23319b6f715bSMatthew G. Knepley if (locA) { 23329b6f715bSMatthew G. Knepley DM dmAux; 23339b6f715bSMatthew G. Knepley 23349566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 23359566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 23369566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 23379566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 23389566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 23399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 23409566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 23419566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 234264c72086SMatthew G. Knepley } 23439b6f715bSMatthew G. Knepley /* Integrate over points */ 23449b6f715bSMatthew G. Knepley { 23459b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2346b7260050SToby Isaac PetscInt maxDegree; 23479b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 23489b6f715bSMatthew G. Knepley const PetscInt *points; 23499b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 23509b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 235164c72086SMatthew G. Knepley 23529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 23539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 23549566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a)); 23559566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 235664c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 235764c72086SMatthew G. Knepley PetscFE fe; 235864c72086SMatthew G. Knepley 23599566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 23609566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 23619b6f715bSMatthew G. Knepley if (!qGeom) { 23629566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 23639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 23649b6f715bSMatthew G. Knepley } 23659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 23669566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 23679b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 2368f15274beSMatthew Knepley const PetscInt point = points[face], *support; 23699b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 2370f15274beSMatthew Knepley PetscInt i; 23719b6f715bSMatthew G. Knepley 23729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 23739566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 23749b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 23759566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 23769b6f715bSMatthew G. Knepley if (locA) { 23779b6f715bSMatthew G. Knepley PetscInt subp; 23789566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 23799566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23809b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 23819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23829b6f715bSMatthew G. Knepley } 23839b6f715bSMatthew G. Knepley } 23849b6f715bSMatthew G. Knepley /* Get blocking */ 23859b6f715bSMatthew G. Knepley { 23869b6f715bSMatthew G. Knepley PetscQuadrature q; 23879b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 23889b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 23899b6f715bSMatthew G. Knepley 23909566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 23919566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 23929566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 23939566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 239464c72086SMatthew G. Knepley blockSize = Nb * Nq; 239564c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 23969b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 23979566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 23989b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 23999b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 240064c72086SMatthew G. Knepley offset = numFaces - Nr; 240164c72086SMatthew G. Knepley } 24029b6f715bSMatthew G. Knepley /* Do integration for each field */ 24039b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 24049566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 24059566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral)); 24069566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 240764c72086SMatthew G. Knepley } 24089566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 24099566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf])); 24109566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 241164c72086SMatthew G. Knepley /* Cleanup data arrays */ 24129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 24139566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 24149566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 24159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 241664c72086SMatthew G. Knepley } 241764c72086SMatthew G. Knepley } 24189566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 24199566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 24209b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 24219b6f715bSMatthew G. Knepley } 24229b6f715bSMatthew G. Knepley 24239b6f715bSMatthew G. Knepley /*@ 24249b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 24259b6f715bSMatthew G. Knepley 24269b6f715bSMatthew G. Knepley Input Parameters: 24279b6f715bSMatthew G. Knepley + dm - The mesh 24289b6f715bSMatthew G. Knepley . X - Global input vector 24299b6f715bSMatthew G. Knepley . label - The boundary DMLabel 24309b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values 24319b6f715bSMatthew G. Knepley . vals - The label values to use, or PETSC_NULL for all values 243267b8a455SSatish Balay . func - The function to integrate along the boundary 24339b6f715bSMatthew G. Knepley - user - The user context 24349b6f715bSMatthew G. Knepley 24359b6f715bSMatthew G. Knepley Output Parameter: 24369b6f715bSMatthew G. Knepley . integral - Integral for each field 24379b6f715bSMatthew G. Knepley 24389b6f715bSMatthew G. Knepley Level: developer 24399b6f715bSMatthew G. Knepley 2440db781477SPatrick Sanan .seealso: `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 24419b6f715bSMatthew G. Knepley @*/ 2442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2443d71ae5a4SJacob Faibussowitsch { 24449b6f715bSMatthew G. Knepley Vec locX; 24459b6f715bSMatthew G. Knepley PetscSection section; 24469b6f715bSMatthew G. Knepley DMLabel depthLabel; 24479b6f715bSMatthew G. Knepley IS facetIS; 24489b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 24499b6f715bSMatthew G. Knepley 24509b6f715bSMatthew G. Knepley PetscFunctionBegin; 24519b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24529b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 24539b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 2454dadcf809SJacob Faibussowitsch if (vals) PetscValidIntPointer(vals, 5); 2455dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 7); 24569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 24579566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 24589566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 24609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 24619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 24629b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 24639566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 24649566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 24659566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 24669566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 24679b6f715bSMatthew G. Knepley /* Loop over label values */ 24689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 24699b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 24709b6f715bSMatthew G. Knepley IS pointIS; 24719b6f715bSMatthew G. Knepley PetscInt numFaces, face; 24729b6f715bSMatthew G. Knepley PetscScalar *fintegral; 24739b6f715bSMatthew G. Knepley 24749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 24759b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 24769b6f715bSMatthew G. Knepley { 24779b6f715bSMatthew G. Knepley IS isectIS; 24789b6f715bSMatthew G. Knepley 24799b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 24809566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 24819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24829b6f715bSMatthew G. Knepley pointIS = isectIS; 24839b6f715bSMatthew G. Knepley } 24849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 24859566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 24869566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user)); 24879b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 24889371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 24899371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 24909566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 24919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24929b6f715bSMatthew G. Knepley } 24939566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 24949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 24959566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 249664c72086SMatthew G. Knepley PetscFunctionReturn(0); 249764c72086SMatthew G. Knepley } 249864c72086SMatthew G. Knepley 2499d69c5d34SMatthew G. Knepley /*@ 2500cf51de39SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to a uniformly refined DM. 2501d69c5d34SMatthew G. Knepley 2502d69c5d34SMatthew G. Knepley Input Parameters: 2503cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2504cf51de39SMatthew G. Knepley . dmf - The fine mesh 2505cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2506d69c5d34SMatthew G. Knepley - user - The user context 2507d69c5d34SMatthew G. Knepley 2508d69c5d34SMatthew G. Knepley Output Parameter: 2509934789fcSMatthew G. Knepley . In - The interpolation matrix 2510d69c5d34SMatthew G. Knepley 2511d69c5d34SMatthew G. Knepley Level: developer 2512d69c5d34SMatthew G. Knepley 2513db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2514d69c5d34SMatthew G. Knepley @*/ 2515d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2516d71ae5a4SJacob Faibussowitsch { 2517d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2518d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2519d69c5d34SMatthew G. Knepley PetscFE *feRef; 252097c42addSMatthew G. Knepley PetscFV *fvRef; 2521d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2522d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2523d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2524485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 25252ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2526d69c5d34SMatthew G. Knepley 2527d69c5d34SMatthew G. Knepley PetscFunctionBegin; 25289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 25299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 25309566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 25319566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 25329566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 25339566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 25349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 25359566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 25369566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2537d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 25382ea9c922SToby Isaac PetscObject obj, objc; 25392ea9c922SToby Isaac PetscClassId id, idc; 25402ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2541d69c5d34SMatthew G. Knepley 25429566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 25439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 254497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 254597c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 254697c42addSMatthew G. Knepley 2547cf51de39SMatthew G. Knepley if (isRefined) { 25489566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2549cf51de39SMatthew G. Knepley } else { 25509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2551cf51de39SMatthew G. Knepley feRef[f] = fe; 2552cf51de39SMatthew G. Knepley } 25539566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 25549566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 255597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 255697c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 255797c42addSMatthew G. Knepley PetscDualSpace Q; 255897c42addSMatthew G. Knepley 2559cf51de39SMatthew G. Knepley if (isRefined) { 25609566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2561cf51de39SMatthew G. Knepley } else { 25629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2563cf51de39SMatthew G. Knepley fvRef[f] = fv; 2564cf51de39SMatthew G. Knepley } 25659566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 25669566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 25679566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25689566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 256997c42addSMatthew G. Knepley } 25709566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 25719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 25722ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 25732ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 25742ea9c922SToby Isaac 25759566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 25762ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 25772ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 25782ea9c922SToby Isaac PetscDualSpace Q; 25792ea9c922SToby Isaac 25809566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25819566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2582d69c5d34SMatthew G. Knepley } 25832ea9c922SToby Isaac rTotDim += rNb; 25842ea9c922SToby Isaac cTotDim += cNb; 25852ea9c922SToby Isaac } 25869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 25879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2588d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2589d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2590d69c5d34SMatthew G. Knepley PetscQuadrature f; 2591d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2592d69c5d34SMatthew G. Knepley PetscReal *points; 2593d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2594d69c5d34SMatthew G. Knepley 2595d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 259697c42addSMatthew G. Knepley if (feRef[fieldI]) { 25979566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 25989566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 259997c42addSMatthew G. Knepley } else { 26009566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 26019566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 260297c42addSMatthew G. Knepley } 26039566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2604d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 26059566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26069566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2607d69c5d34SMatthew G. Knepley npoints += Np; 2608d69c5d34SMatthew G. Knepley } 26099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 2610d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26119566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26129566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 26139371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 26149371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 2615d69c5d34SMatthew G. Knepley } 2616d69c5d34SMatthew G. Knepley 2617d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 261897c42addSMatthew G. Knepley PetscObject obj; 261997c42addSMatthew G. Knepley PetscClassId id; 26209c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2621d69c5d34SMatthew G. Knepley 26229566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 26239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 262497c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 262597c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2626ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2627d69c5d34SMatthew G. Knepley 2628d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 26299566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 26309566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2631ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2632ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 263363a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 26349566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2635d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26369566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26379566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 263863a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2639d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 264036a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2641d172c84bSMatthew G. Knepley /* 2642d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2643d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2644d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2645d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2646d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2647d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2648d172c84bSMatthew G. Knepley */ 2649ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 265036a6d9c0SMatthew G. Knepley } 2651d69c5d34SMatthew G. Knepley } 2652d69c5d34SMatthew G. Knepley } 26539566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2654ffe73a53SMatthew G. Knepley } 265597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 265697c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 265797c42addSMatthew G. Knepley 265897c42addSMatthew G. Knepley /* Evaluate constant function at points */ 26599566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 266097c42addSMatthew G. Knepley cpdim = 1; 266197c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 266297c42addSMatthew G. Knepley if (fieldI == fieldJ) { 266363a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 266497c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26659566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26669566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 266763a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 266897c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 266997c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2670458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 267197c42addSMatthew G. Knepley } 267297c42addSMatthew G. Knepley } 267397c42addSMatthew G. Knepley } 267497c42addSMatthew G. Knepley } 267597c42addSMatthew G. Knepley } 2676d172c84bSMatthew G. Knepley offsetJ += cpdim; 2677d69c5d34SMatthew G. Knepley } 2678d172c84bSMatthew G. Knepley offsetI += fpdim; 26799566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 2680d69c5d34SMatthew G. Knepley } 26819566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 26827f5b169aSMatthew G. Knepley /* Preallocate matrix */ 26837f5b169aSMatthew G. Knepley { 2684c094ef40SMatthew G. Knepley Mat preallocator; 2685c094ef40SMatthew G. Knepley PetscScalar *vals; 2686c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2687c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 26887f5b169aSMatthew G. Knepley 26899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 26909566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 26919566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 26929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 26939566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 26949566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 26957f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2696cf51de39SMatthew G. Knepley if (isRefined) { 26979566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 26989566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 2699cf51de39SMatthew G. Knepley } else { 27009566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES)); 2701cf51de39SMatthew G. Knepley } 27027f5b169aSMatthew G. Knepley } 27039566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 27049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 27059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 27069566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 27079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 27087f5b169aSMatthew G. Knepley } 27097f5b169aSMatthew G. Knepley /* Fill matrix */ 27109566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 2711d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2712cf51de39SMatthew G. Knepley if (isRefined) { 27139566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2714cf51de39SMatthew G. Knepley } else { 27159566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2716cf51de39SMatthew G. Knepley } 2717d69c5d34SMatthew G. Knepley } 27189566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 27199566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 27209566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 27219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 27229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 27239318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 27249566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 27259566063dSJacob Faibussowitsch PetscCall(MatChop(In, 1.0e-10)); 27269566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 2727d69c5d34SMatthew G. Knepley } 27289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 2729d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 2730d69c5d34SMatthew G. Knepley } 27316c73c22cSMatthew G. Knepley 2732d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2733d71ae5a4SJacob Faibussowitsch { 2734bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 2735bd041c0cSMatthew G. Knepley } 2736bd041c0cSMatthew G. Knepley 273768132eb9SMatthew G. Knepley /*@ 273868132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 273968132eb9SMatthew G. Knepley 274068132eb9SMatthew G. Knepley Input Parameters: 274168132eb9SMatthew G. Knepley + dmf - The fine mesh 274268132eb9SMatthew G. Knepley . dmc - The coarse mesh 274368132eb9SMatthew G. Knepley - user - The user context 274468132eb9SMatthew G. Knepley 274568132eb9SMatthew G. Knepley Output Parameter: 274668132eb9SMatthew G. Knepley . In - The interpolation matrix 274768132eb9SMatthew G. Knepley 274868132eb9SMatthew G. Knepley Level: developer 274968132eb9SMatthew G. Knepley 2750db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 275168132eb9SMatthew G. Knepley @*/ 2752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 2753d71ae5a4SJacob Faibussowitsch { 275464e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 275564e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 27564ef9d792SMatthew G. Knepley PetscDS prob; 2757a0806964SMatthew G. Knepley Mat interp; 2758a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 2759a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 2760a0806964SMatthew G. Knepley PetscInt locRows, locCols; 27614ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 27624ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 27634ef9d792SMatthew G. Knepley PetscScalar *elemMat; 2764a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 27654ef9d792SMatthew G. Knepley 27664ef9d792SMatthew G. Knepley PetscFunctionBegin; 27679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 27699566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 27709566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 27719566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 27729566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 27739566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 27749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 27759566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 27769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 27779566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 2778a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 27799566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 27809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 27814ef9d792SMatthew G. Knepley 2782a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 2783a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 2784a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 2785a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 2786a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 2787a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 27884ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 27894ef9d792SMatthew G. Knepley PetscObject obj; 27904ef9d792SMatthew G. Knepley PetscClassId id; 2791c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2792ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 27934ef9d792SMatthew G. Knepley PetscQuadrature f; 27944ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2795d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 27964ef9d792SMatthew G. Knepley 2797d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 27989566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 27999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 28004ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28014ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 28024ef9d792SMatthew G. Knepley 28039566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 28049566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 2805a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 28064ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 28074ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 28084ef9d792SMatthew G. Knepley 28099566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 28104ef9d792SMatthew G. Knepley Nc = 1; 281163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 28129566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 28134ef9d792SMatthew G. Knepley /* For each fine grid cell */ 28144ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 28154ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 28164ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 28174ef9d792SMatthew G. Knepley 28189566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2820d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 28214ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 28224ef9d792SMatthew G. Knepley Vec pointVec; 28234ef9d792SMatthew G. Knepley PetscScalar *pV; 282412111d7cSToby Isaac PetscSF coarseCellSF = NULL; 28253a93e3b7SToby Isaac const PetscSFNode *coarseCells; 2826d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 28274ef9d792SMatthew G. Knepley 28284ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 28299566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 28309566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 283163a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 28329566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 28339566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 28349566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28354ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2836c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2837c330f8ffSToby Isaac 28384ef9d792SMatthew G. Knepley /* Transform point to real space */ 2839c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 28404ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 28414ef9d792SMatthew G. Knepley } 28429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28434ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 28441555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 28459566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 28464ef9d792SMatthew G. Knepley /* Update preallocation info */ 28479566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 28485f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 28499566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28504ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2851826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2852c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2853826eb36dSMatthew G. Knepley 28549566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2855a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 2856a0806964SMatthew G. Knepley else cpdim = 1; 2857a0806964SMatthew G. Knepley 2858a0806964SMatthew G. Knepley if (s) { 28594ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 28609566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 2861e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 2862c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 28634ef9d792SMatthew G. Knepley 28644ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28654ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2866a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 28679566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 28684ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 28694ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2870ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 28714ef9d792SMatthew G. Knepley } 28724ef9d792SMatthew G. Knepley } else { 28734ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 28749c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 28754ef9d792SMatthew G. Knepley } 28764ef9d792SMatthew G. Knepley } 28779566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 2878a0806964SMatthew G. Knepley } 2879a0806964SMatthew G. Knepley /* Update interpolator */ 2880d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 2881a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 28829566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 28834ef9d792SMatthew G. Knepley } 28849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 28869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 28874ef9d792SMatthew G. Knepley } 28889566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28894ef9d792SMatthew G. Knepley } 2890a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 2891a0806964SMatthew G. Knepley } 2892a0806964SMatthew G. Knepley if (!s) { 2893a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 2894a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 2895a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 2896a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 2897a0806964SMatthew G. Knepley interp = In; 2898a0806964SMatthew G. Knepley } 28994ef9d792SMatthew G. Knepley } 29009566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 29019566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 29029566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 29039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 29049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 29059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29064ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 29074ef9d792SMatthew G. Knepley } 29084ef9d792SMatthew G. Knepley 290946fa42a0SMatthew G. Knepley /*@ 2910bd041c0cSMatthew G. Knepley DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM. 2911bd041c0cSMatthew G. Knepley 2912bd041c0cSMatthew G. Knepley Input Parameters: 2913bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2914bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2915bd041c0cSMatthew G. Knepley - user - The user context 2916bd041c0cSMatthew G. Knepley 2917bd041c0cSMatthew G. Knepley Output Parameter: 2918bd041c0cSMatthew G. Knepley . mass - The mass matrix 2919bd041c0cSMatthew G. Knepley 2920bd041c0cSMatthew G. Knepley Level: developer 2921bd041c0cSMatthew G. Knepley 2922db781477SPatrick Sanan .seealso: `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2923bd041c0cSMatthew G. Knepley @*/ 2924d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2925d71ae5a4SJacob Faibussowitsch { 2926bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 2927bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2928bd041c0cSMatthew G. Knepley PetscDS prob; 2929bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2930e8f14785SLisandro Dalcin PetscHSetIJ ht; 2931bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2932bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2933bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2934bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2935bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2936bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2937bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2938bd041c0cSMatthew G. Knepley 2939bd041c0cSMatthew G. Knepley PetscFunctionBegin; 29409566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 29419566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 29429566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 29439566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 29449566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29459566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 29469566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29479566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 29489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29499566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 29509566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 29519566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 29529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 2953bd041c0cSMatthew G. Knepley 29549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 29559566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 29569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 29579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 29589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 29599566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 29609566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 29619566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 29629566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 2963bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2964bd041c0cSMatthew G. Knepley PetscObject obj; 2965bd041c0cSMatthew G. Knepley PetscClassId id; 2966bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2967bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2968bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2969bd041c0cSMatthew G. Knepley 29709566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 29719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 29729566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 29739566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 29749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 2975bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2976bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2977bd041c0cSMatthew G. Knepley Vec pointVec; 2978bd041c0cSMatthew G. Knepley PetscScalar *pV; 2979bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2980bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2981bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2982bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2983bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2984bd041c0cSMatthew G. Knepley 29859566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 29869566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2987bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 29889566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 29899566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 29909566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 2991bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2992c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2993c330f8ffSToby Isaac 2994bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2995c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 2996bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 2997bd041c0cSMatthew G. Knepley } 29989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 2999bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30009566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 30019566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3002bd041c0cSMatthew G. Knepley /* Update preallocation info */ 30039566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30045f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3005bd041c0cSMatthew G. Knepley { 3006e8f14785SLisandro Dalcin PetscHashIJKey key; 3007e8f14785SLisandro Dalcin PetscBool missing; 3008bd041c0cSMatthew G. Knepley 3009bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3010e8f14785SLisandro Dalcin key.i = findices[i]; 3011e8f14785SLisandro Dalcin if (key.i >= 0) { 3012bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3013bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 30149566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3015bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3016e8f14785SLisandro Dalcin key.j = cindices[c]; 3017e8f14785SLisandro Dalcin if (key.j < 0) continue; 30189566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3019bd041c0cSMatthew G. Knepley if (missing) { 3020e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3021e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3022bd041c0cSMatthew G. Knepley } 3023bd041c0cSMatthew G. Knepley } 30249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3025bd041c0cSMatthew G. Knepley } 3026bd041c0cSMatthew G. Knepley } 3027bd041c0cSMatthew G. Knepley } 3028bd041c0cSMatthew G. Knepley } 30299566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 30309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 30319566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3032bd041c0cSMatthew G. Knepley } 3033bd041c0cSMatthew G. Knepley } 30349566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 30359566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 30369566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 30379566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3038bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3039bd041c0cSMatthew G. Knepley PetscObject obj; 3040bd041c0cSMatthew G. Knepley PetscClassId id; 3041ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3042bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3043bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3044bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3045bd041c0cSMatthew G. Knepley 30469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 30479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3048ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 30499566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 30509566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 30519566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3052ef0bb6c7SMatthew G. Knepley } else { 30539566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3054ef0bb6c7SMatthew G. Knepley } 30559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3056bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3057bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3058bd041c0cSMatthew G. Knepley Vec pointVec; 3059bd041c0cSMatthew G. Knepley PetscScalar *pV; 3060bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3061bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3062bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3063bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3064bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3065bd041c0cSMatthew G. Knepley 30669566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30679566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3068bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 30699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 30709566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30719566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3072bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3073c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3074c330f8ffSToby Isaac 3075bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3076c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3077bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3078bd041c0cSMatthew G. Knepley } 30799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3080bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30819566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3082bd041c0cSMatthew G. Knepley /* Update matrix */ 30839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30845f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 30859566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3086bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3087bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3088c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3089c330f8ffSToby Isaac 30909566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3091bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 30929566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3093bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3094c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3095bd041c0cSMatthew G. Knepley 3096bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3097bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3098bd041c0cSMatthew G. Knepley 3099bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 31009566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 31019566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3102bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3103bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3105bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3106ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3107bd041c0cSMatthew G. Knepley } 3108bd041c0cSMatthew G. Knepley /* Update interpolator */ 31099566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 311063a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31119566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3112bd041c0cSMatthew G. Knepley } 3113bd041c0cSMatthew G. Knepley } else { 3114bd041c0cSMatthew G. Knepley cpdim = 1; 3115bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3117bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3118bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3119bd041c0cSMatthew G. Knepley } 3120bd041c0cSMatthew G. Knepley /* Update interpolator */ 31219566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 312263a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 312363a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31249566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3125bd041c0cSMatthew G. Knepley } 3126bd041c0cSMatthew G. Knepley } 31279566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3128bd041c0cSMatthew G. Knepley } 31299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 31309566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 31319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 31329566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3133bd041c0cSMatthew G. Knepley } 31349566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3135bd041c0cSMatthew G. Knepley } 31369566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 31379566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 31389566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 31399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 31409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 3141bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 3142bd041c0cSMatthew G. Knepley } 3143bd041c0cSMatthew G. Knepley 3144bd041c0cSMatthew G. Knepley /*@ 314546fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 314646fa42a0SMatthew G. Knepley 314746fa42a0SMatthew G. Knepley Input Parameters: 314846fa42a0SMatthew G. Knepley + dmc - The coarse mesh 314946fa42a0SMatthew G. Knepley - dmf - The fine mesh 315046fa42a0SMatthew G. Knepley - user - The user context 315146fa42a0SMatthew G. Knepley 315246fa42a0SMatthew G. Knepley Output Parameter: 315346fa42a0SMatthew G. Knepley . sc - The mapping 315446fa42a0SMatthew G. Knepley 315546fa42a0SMatthew G. Knepley Level: developer 315646fa42a0SMatthew G. Knepley 3157db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 315846fa42a0SMatthew G. Knepley @*/ 3159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3160d71ae5a4SJacob Faibussowitsch { 3161e9d4ef1bSMatthew G. Knepley PetscDS prob; 31627c927364SMatthew G. Knepley PetscFE *feRef; 316397c42addSMatthew G. Knepley PetscFV *fvRef; 31647c927364SMatthew G. Knepley Vec fv, cv; 31657c927364SMatthew G. Knepley IS fis, cis; 31667c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 31677c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3168485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 31696f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 31707c927364SMatthew G. Knepley 31717c927364SMatthew G. Knepley PetscFunctionBegin; 31729566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 31739566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 31749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31759566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 31769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31779566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 31789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 31799566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 31809566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31819566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 31827c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 318397c42addSMatthew G. Knepley PetscObject obj; 318497c42addSMatthew G. Knepley PetscClassId id; 3185aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 31867c927364SMatthew G. Knepley 31879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 31889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 318997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 319097c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 31916f3d3cbcSMatthew G. Knepley PetscSpace sp; 31929b2fc754SMatthew G. Knepley PetscInt maxDegree; 319397c42addSMatthew G. Knepley 31949566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 31959566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 31969566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 31979566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 31989566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 31999b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 320097c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 320197c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 320297c42addSMatthew G. Knepley PetscDualSpace Q; 320397c42addSMatthew G. Knepley 32049566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 32059566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 32069566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 32079566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 32086f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 320997c42addSMatthew G. Knepley } 3210d172c84bSMatthew G. Knepley fTotDim += fNb; 32117c927364SMatthew G. Knepley } 32129566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 32139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 32147c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 32157c927364SMatthew G. Knepley PetscFE feC; 321697c42addSMatthew G. Knepley PetscFV fvC; 32177c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3218d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 32197c927364SMatthew G. Knepley 322097c42addSMatthew G. Knepley if (feRef[field]) { 32219566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 32229566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 32239566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 32249566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 32259566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 32269566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32279566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 32289566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 322997c42addSMatthew G. Knepley } else { 32309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 32319566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 32329566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 32339566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 32349566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32359566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 32369566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 323797c42addSMatthew G. Knepley } 323863a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 32397c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 32407c927364SMatthew G. Knepley PetscQuadrature cfunc; 3241d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3242d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 324397c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 32447c927364SMatthew G. Knepley 32459566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 32469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 324763a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 32481dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 32497c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 32507c927364SMatthew G. Knepley PetscQuadrature ffunc; 3251d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 32527c927364SMatthew G. Knepley PetscReal sum = 0.0; 3253d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 32547c927364SMatthew G. Knepley 32559566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 32569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 325763a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 32587c927364SMatthew G. Knepley if (NpC != NpF) continue; 32597c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 32607c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3261d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3262d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3263d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 326497c42addSMatthew G. Knepley found = PETSC_TRUE; 32657c927364SMatthew G. Knepley break; 32667c927364SMatthew G. Knepley } 326797c42addSMatthew G. Knepley if (!found) { 326897c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3269d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3270d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 327197c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 327297c42addSMatthew G. Knepley } 32737c927364SMatthew G. Knepley } 3274d172c84bSMatthew G. Knepley offsetC += cpdim; 3275d172c84bSMatthew G. Knepley offsetF += fpdim; 32767c927364SMatthew G. Knepley } 32779371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 32789371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 32799371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 32809371c9d4SSatish Balay } 32819566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 32827c927364SMatthew G. Knepley 32839566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 32849566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 32859566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 32869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 32879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 32889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 32899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 32907c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 32917c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 32929566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 32937c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 32940bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 329563a3b9bcSJacob Faibussowitsch PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 32967c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 32977c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 32987c927364SMatthew G. Knepley } 32997c927364SMatthew G. Knepley } 33009566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 33019566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 33027c927364SMatthew G. Knepley 33039566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 33049566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 33059566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 33069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 33079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 33089566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 33099566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 33109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 3311cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 3312cb1e1211SMatthew G Knepley } 3313a1cf66bbSMatthew G. Knepley 33142f856554SMatthew G. Knepley /*@C 33152f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 33162f856554SMatthew G. Knepley 33172f856554SMatthew G. Knepley Input Parameters: 33182f856554SMatthew G. Knepley + dm - The DM 33192f856554SMatthew G. Knepley . cellIS - The cells to include 33202f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33212f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33222f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 33232f856554SMatthew G. Knepley 33242f856554SMatthew G. Knepley Output Parameters: 33252f856554SMatthew G. Knepley + u - The field coefficients 33262f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 33272f856554SMatthew G. Knepley - a - The auxiliary field coefficients 33282f856554SMatthew G. Knepley 33292f856554SMatthew G. Knepley Level: developer 33302f856554SMatthew G. Knepley 3331db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 33322f856554SMatthew G. Knepley @*/ 3333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3334d71ae5a4SJacob Faibussowitsch { 33352f856554SMatthew G. Knepley DM plex, plexA = NULL; 3336a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 33372f856554SMatthew G. Knepley PetscSection section, sectionAux; 33382f856554SMatthew G. Knepley PetscDS prob; 33392f856554SMatthew G. Knepley const PetscInt *cells; 33402f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 33412f856554SMatthew G. Knepley 33422f856554SMatthew G. Knepley PetscFunctionBegin; 33432f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3344064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3345ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3346ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 3347064a246eSJacob Faibussowitsch PetscValidPointer(u, 6); 3348064a246eSJacob Faibussowitsch PetscValidPointer(u_t, 7); 3349064a246eSJacob Faibussowitsch PetscValidPointer(a, 8); 33509566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 33519566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 33529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 33539566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 33549566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 33552f856554SMatthew G. Knepley if (locA) { 33562f856554SMatthew G. Knepley DM dmAux; 33572f856554SMatthew G. Knepley PetscDS probAux; 33582f856554SMatthew G. Knepley 33599566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 33609566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 33619566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 33629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 33639566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 33649566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 33652f856554SMatthew G. Knepley } 33662f856554SMatthew G. Knepley numCells = cEnd - cStart; 33679566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 33689371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3369ad540459SPierre Jolivet else *u_t = NULL; 33709371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3371ad540459SPierre Jolivet else *a = NULL; 33722f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33732f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 33742f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 33752f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 33762f856554SMatthew G. Knepley PetscInt i; 33772f856554SMatthew G. Knepley 33789566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 33792f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 33809566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 33812f856554SMatthew G. Knepley if (locX_t) { 33829566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 33832f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 33849566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 33852f856554SMatthew G. Knepley } 33862f856554SMatthew G. Knepley if (locA) { 33872f856554SMatthew G. Knepley PetscInt subcell; 33889566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 33899566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 33902f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 33919566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 33922f856554SMatthew G. Knepley } 33932f856554SMatthew G. Knepley } 33949566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 33959566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 33969566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 33972f856554SMatthew G. Knepley PetscFunctionReturn(0); 33982f856554SMatthew G. Knepley } 33992f856554SMatthew G. Knepley 34002f856554SMatthew G. Knepley /*@C 34012f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 34022f856554SMatthew G. Knepley 34032f856554SMatthew G. Knepley Input Parameters: 34042f856554SMatthew G. Knepley + dm - The DM 34052f856554SMatthew G. Knepley . cellIS - The cells to include 34062f856554SMatthew G. Knepley . locX - A local vector with the solution fields 34072f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 34082f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 34092f856554SMatthew G. Knepley 34102f856554SMatthew G. Knepley Output Parameters: 34112f856554SMatthew G. Knepley + u - The field coefficients 34122f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 34132f856554SMatthew G. Knepley - a - The auxiliary field coefficients 34142f856554SMatthew G. Knepley 34152f856554SMatthew G. Knepley Level: developer 34162f856554SMatthew G. Knepley 3417db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 34182f856554SMatthew G. Knepley @*/ 3419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3420d71ae5a4SJacob Faibussowitsch { 34212f856554SMatthew G. Knepley PetscFunctionBegin; 34229566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 34239566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 34249566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 34252f856554SMatthew G. Knepley PetscFunctionReturn(0); 34262f856554SMatthew G. Knepley } 34272f856554SMatthew G. Knepley 3428faff4f7fSMatthew G. Knepley /* 3429faff4f7fSMatthew G. Knepley Get the auxiliary field vectors for the negative side (s = 0) and positive side (s = 1) of the interfaace 3430faff4f7fSMatthew G. Knepley */ 3431d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridAuxFields(DM dm, DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 3432d71ae5a4SJacob Faibussowitsch { 343304c51a94SMatthew G. Knepley DM plexA[2]; 3434148442b3SMatthew G. Knepley DMEnclosureType encAux[2]; 343504c51a94SMatthew G. Knepley PetscSection sectionAux[2]; 34366528b96dSMatthew G. Knepley const PetscInt *cells; 3437148442b3SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimAux[2]; 34386528b96dSMatthew G. Knepley 34396528b96dSMatthew G. Knepley PetscFunctionBegin; 3440148442b3SMatthew G. Knepley PetscValidPointer(locA, 5); 344104c51a94SMatthew G. Knepley if (!locA[0] || !locA[1]) PetscFunctionReturn(0); 3442148442b3SMatthew G. Knepley PetscValidPointer(dmAux, 2); 3443148442b3SMatthew G. Knepley PetscValidPointer(dsAux, 3); 3444148442b3SMatthew G. Knepley PetscValidPointer(a, 6); 34459566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 34466528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3447148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 3448148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dmAux[s], DM_CLASSID, 2); 3449148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dsAux[s], PETSCDS_CLASSID, 3); 3450148442b3SMatthew G. Knepley PetscValidHeaderSpecific(locA[s], VEC_CLASSID, 5); 34519566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux[s], &plexA[s], PETSC_FALSE)); 34529566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux[s], dm, &encAux[s])); 34539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux[s], §ionAux[s])); 34549566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[s], &totDimAux[s])); 34559566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmAux[s], numCells * totDimAux[s], MPIU_SCALAR, &a[s])); 345604c51a94SMatthew G. Knepley } 3457148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 34586528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 34596528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 34606528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 34616528b96dSMatthew G. Knepley 34629566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 34639566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 3464148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 34655fedec97SMatthew G. Knepley const PetscInt *support; 3466148442b3SMatthew G. Knepley PetscScalar *x = NULL, *al = a[s]; 3467148442b3SMatthew G. Knepley const PetscInt tdA = totDimAux[s]; 34685fedec97SMatthew G. Knepley PetscInt ssize, scell; 3469148442b3SMatthew G. Knepley PetscInt subface, Na, i; 34706528b96dSMatthew G. Knepley 34719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[s], &support)); 34729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[s], &ssize)); 347363a3b9bcSJacob Faibussowitsch PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[s], cell, ssize); 34745fedec97SMatthew G. Knepley if (support[0] == cell) scell = support[1]; 34755fedec97SMatthew G. Knepley else if (support[1] == cell) scell = support[0]; 347663a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[s], cell); 34775fedec97SMatthew G. Knepley 34789566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA[s], dm, encAux[s], scell, &subface)); 34799566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34806528b96dSMatthew G. Knepley for (i = 0; i < Na; ++i) al[cind * tdA + i] = x[i]; 34819566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34826528b96dSMatthew G. Knepley } 34836528b96dSMatthew G. Knepley } 34849566063dSJacob Faibussowitsch for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexA[s])); 34859566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 34866528b96dSMatthew G. Knepley PetscFunctionReturn(0); 34876528b96dSMatthew G. Knepley } 34886528b96dSMatthew G. Knepley 3489d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreHybridAuxFields(DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 3490d71ae5a4SJacob Faibussowitsch { 34916528b96dSMatthew G. Knepley PetscFunctionBegin; 349204c51a94SMatthew G. Knepley if (!locA[0] || !locA[1]) PetscFunctionReturn(0); 34939566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[0], 0, MPIU_SCALAR, &a[0])); 34949566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[1], 0, MPIU_SCALAR, &a[1])); 34956528b96dSMatthew G. Knepley PetscFunctionReturn(0); 34966528b96dSMatthew G. Knepley } 34976528b96dSMatthew G. Knepley 34982f856554SMatthew G. Knepley /*@C 34992f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 35002f856554SMatthew G. Knepley 35012f856554SMatthew G. Knepley Input Parameters: 35022f856554SMatthew G. Knepley + dm - The DM 35032f856554SMatthew G. Knepley . fStart - The first face to include 35042f856554SMatthew G. Knepley . fEnd - The first face to exclude 35052f856554SMatthew G. Knepley . locX - A local vector with the solution fields 35062f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 35072f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 35082f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 35092f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 35102f856554SMatthew G. Knepley 35112f856554SMatthew G. Knepley Output Parameters: 35122f856554SMatthew G. Knepley + Nface - The number of faces with field values 35132f856554SMatthew G. Knepley . uL - The field values at the left side of the face 35142f856554SMatthew G. Knepley - uR - The field values at the right side of the face 35152f856554SMatthew G. Knepley 35162f856554SMatthew G. Knepley Level: developer 35172f856554SMatthew G. Knepley 3518db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()` 35192f856554SMatthew G. Knepley @*/ 3520d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3521d71ae5a4SJacob Faibussowitsch { 35222f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 35232f856554SMatthew G. Knepley PetscSection section; 35242f856554SMatthew G. Knepley PetscDS prob; 35252f856554SMatthew G. Knepley DMLabel ghostLabel; 35262f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 35272f856554SMatthew G. Knepley PetscBool *isFE; 35282f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 35292f856554SMatthew G. Knepley 35302f856554SMatthew G. Knepley PetscFunctionBegin; 35312f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35322f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 3533ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 35342f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 35352f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 3536ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 3537064a246eSJacob Faibussowitsch PetscValidPointer(uL, 10); 3538064a246eSJacob Faibussowitsch PetscValidPointer(uR, 11); 35399566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35409566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 35419566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 35429566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 35439566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 35449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 35452f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35462f856554SMatthew G. Knepley PetscObject obj; 35472f856554SMatthew G. Knepley PetscClassId id; 35482f856554SMatthew G. Knepley 35499566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 35509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 35519371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 35529371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 35539371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 35549371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 35559371c9d4SSatish Balay } else { 35569371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 35579371c9d4SSatish Balay } 35582f856554SMatthew G. Knepley } 35599566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 35609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 35619566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 35629566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 35639566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 35649566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 35652f856554SMatthew G. Knepley if (locGrad) { 35669566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 35679566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 35682f856554SMatthew G. Knepley } 35699566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 35709566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 35712f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 35722f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 35732f856554SMatthew G. Knepley const PetscInt *cells; 35742f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 35752f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 35762f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 35772f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 35782f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 35792f856554SMatthew G. Knepley 35809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 35819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 35829566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 35832f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 35849566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 35859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 35869566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 35879566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 35882f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35892f856554SMatthew G. Knepley PetscInt off; 35902f856554SMatthew G. Knepley 35919566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 35922f856554SMatthew G. Knepley if (isFE[f]) { 35932f856554SMatthew G. Knepley const PetscInt *cone; 35942f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 35952f856554SMatthew G. Knepley 35962f856554SMatthew G. Knepley xL = xR = NULL; 35979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 35989566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 35999566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 36009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 36019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 36029371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 36039371c9d4SSatish Balay if (cone[faceLocL] == face) break; 36049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 36059566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 36069371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 36079371c9d4SSatish Balay if (cone[faceLocR] == face) break; 36081dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 36092f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 36102f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 36112f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 36129566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 36139566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 36142f856554SMatthew G. Knepley else { 36159371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 36169371c9d4SSatish Balay } 36179371c9d4SSatish Balay } else { 36189566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 36199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 36202f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 36212f856554SMatthew G. Knepley } 36229566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 36239566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 36242f856554SMatthew G. Knepley } else { 36252f856554SMatthew G. Knepley PetscFV fv; 36262f856554SMatthew G. Knepley PetscInt numComp, c; 36272f856554SMatthew G. Knepley 36289566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 36299566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 36309566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 36319566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 36322f856554SMatthew G. Knepley if (dmGrad) { 36332f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 36342f856554SMatthew G. Knepley 36359566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 36369566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 36372f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 36382f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 36392f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 36402f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 36412f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 36422f856554SMatthew G. Knepley } 36432f856554SMatthew G. Knepley } else { 36442f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 36452f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 36462f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 36472f856554SMatthew G. Knepley } 36482f856554SMatthew G. Knepley } 36492f856554SMatthew G. Knepley } 36502f856554SMatthew G. Knepley } 36512f856554SMatthew G. Knepley ++iface; 36522f856554SMatthew G. Knepley } 36532f856554SMatthew G. Knepley *Nface = iface; 36549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 36559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 36569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 365748a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 36589566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 36592f856554SMatthew G. Knepley PetscFunctionReturn(0); 36602f856554SMatthew G. Knepley } 36612f856554SMatthew G. Knepley 36622f856554SMatthew G. Knepley /*@C 36632f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 36642f856554SMatthew G. Knepley 36652f856554SMatthew G. Knepley Input Parameters: 36662f856554SMatthew G. Knepley + dm - The DM 36672f856554SMatthew G. Knepley . fStart - The first face to include 36682f856554SMatthew G. Knepley . fEnd - The first face to exclude 36692f856554SMatthew G. Knepley . locX - A local vector with the solution fields 36702f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 36712f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 36722f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 36732f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 36742f856554SMatthew G. Knepley 36752f856554SMatthew G. Knepley Output Parameters: 36762f856554SMatthew G. Knepley + Nface - The number of faces with field values 36772f856554SMatthew G. Knepley . uL - The field values at the left side of the face 36782f856554SMatthew G. Knepley - uR - The field values at the right side of the face 36792f856554SMatthew G. Knepley 36802f856554SMatthew G. Knepley Level: developer 36812f856554SMatthew G. Knepley 3682db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 36832f856554SMatthew G. Knepley @*/ 3684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3685d71ae5a4SJacob Faibussowitsch { 36862f856554SMatthew G. Knepley PetscFunctionBegin; 36879566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 36889566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 36892f856554SMatthew G. Knepley PetscFunctionReturn(0); 36902f856554SMatthew G. Knepley } 36912f856554SMatthew G. Knepley 36922f856554SMatthew G. Knepley /*@C 36932f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 36942f856554SMatthew G. Knepley 36952f856554SMatthew G. Knepley Input Parameters: 36962f856554SMatthew G. Knepley + dm - The DM 36972f856554SMatthew G. Knepley . fStart - The first face to include 36982f856554SMatthew G. Knepley . fEnd - The first face to exclude 36992f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 37002f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 37012f856554SMatthew G. Knepley 37022f856554SMatthew G. Knepley Output Parameters: 37032f856554SMatthew G. Knepley + Nface - The number of faces with field values 37042f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 37052f856554SMatthew G. Knepley - vol - The cell volume 37062f856554SMatthew G. Knepley 37072f856554SMatthew G. Knepley Level: developer 37082f856554SMatthew G. Knepley 3709db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()` 37102f856554SMatthew G. Knepley @*/ 3711d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3712d71ae5a4SJacob Faibussowitsch { 37132f856554SMatthew G. Knepley DM dmFace, dmCell; 37142f856554SMatthew G. Knepley DMLabel ghostLabel; 37152f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 37162f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 37172f856554SMatthew G. Knepley 37182f856554SMatthew G. Knepley PetscFunctionBegin; 37192f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37202f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 37212f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 3722064a246eSJacob Faibussowitsch PetscValidPointer(fgeom, 7); 3723064a246eSJacob Faibussowitsch PetscValidPointer(vol, 8); 37249566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37259566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 37269566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 37279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 37289566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 37299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 37309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 37319566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 37322f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 37332f856554SMatthew G. Knepley const PetscInt *cells; 37342f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 37352f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 37362f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 37372f856554SMatthew G. Knepley PetscReal *voll = *vol; 37382f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 37392f856554SMatthew G. Knepley 37409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 37419566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 37429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 37432f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 37449566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 37459566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 37469566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 37479566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 37482f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 37492f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 37502f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 37512f856554SMatthew G. Knepley } 37522f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 37532f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 37542f856554SMatthew G. Knepley ++iface; 37552f856554SMatthew G. Knepley } 37562f856554SMatthew G. Knepley *Nface = iface; 37579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 37589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 37592f856554SMatthew G. Knepley PetscFunctionReturn(0); 37602f856554SMatthew G. Knepley } 37612f856554SMatthew G. Knepley 37622f856554SMatthew G. Knepley /*@C 37632f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 37642f856554SMatthew G. Knepley 37652f856554SMatthew G. Knepley Input Parameters: 37662f856554SMatthew G. Knepley + dm - The DM 37672f856554SMatthew G. Knepley . fStart - The first face to include 37682f856554SMatthew G. Knepley . fEnd - The first face to exclude 37692f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 37702f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 37712f856554SMatthew G. Knepley 37722f856554SMatthew G. Knepley Output Parameters: 37732f856554SMatthew G. Knepley + Nface - The number of faces with field values 37742f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 37752f856554SMatthew G. Knepley - vol - The cell volume 37762f856554SMatthew G. Knepley 37772f856554SMatthew G. Knepley Level: developer 37782f856554SMatthew G. Knepley 3779db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()` 37802f856554SMatthew G. Knepley @*/ 3781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3782d71ae5a4SJacob Faibussowitsch { 37832f856554SMatthew G. Knepley PetscFunctionBegin; 37849566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 37859566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 37862f856554SMatthew G. Knepley PetscFunctionReturn(0); 37872f856554SMatthew G. Knepley } 37882f856554SMatthew G. Knepley 3789d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3790d71ae5a4SJacob Faibussowitsch { 3791a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3792a1cf66bbSMatthew G. Knepley PetscObjectId id; 3793a1cf66bbSMatthew G. Knepley PetscContainer container; 3794a1cf66bbSMatthew G. Knepley 3795a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 37969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 379763a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 37989566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 3799a1cf66bbSMatthew G. Knepley if (container) { 38009566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 3801a1cf66bbSMatthew G. Knepley } else { 38029566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 38039566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 38049566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 38059566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 38069566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 38079566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 3808a1cf66bbSMatthew G. Knepley } 3809a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3810a1cf66bbSMatthew G. Knepley } 3811a1cf66bbSMatthew G. Knepley 3812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3813d71ae5a4SJacob Faibussowitsch { 3814a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3815a1cf66bbSMatthew G. Knepley *geom = NULL; 3816a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3817a1cf66bbSMatthew G. Knepley } 3818a1cf66bbSMatthew G. Knepley 3819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 3820d71ae5a4SJacob Faibussowitsch { 382192d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 382292d50984SMatthew G. Knepley const char *name = "Residual"; 382392d50984SMatthew G. Knepley DM dmAux = NULL; 382492d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 382592d50984SMatthew G. Knepley PetscDS prob = NULL; 382692d50984SMatthew G. Knepley PetscDS probAux = NULL; 382792d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 382892d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 382992d50984SMatthew G. Knepley DMField coordField = NULL; 3830c0006e53SPatrick Farrell Vec locA; 3831c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 383292d50984SMatthew G. Knepley IS chunkIS; 383392d50984SMatthew G. Knepley const PetscInt *cells; 383492d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3835364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 383692d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 383706ad1575SMatthew G. Knepley PetscFormKey key; 383892d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 383992d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 384092d50984SMatthew G. Knepley 384192d50984SMatthew G. Knepley PetscFunctionBegin; 38429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 384392d50984SMatthew G. Knepley /* FEM+FVM */ 384492d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 38459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 38469566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 38479566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 38489566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 38499566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 385092d50984SMatthew G. Knepley if (locA) { 38519566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 38529566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 38539566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 385492d50984SMatthew G. Knepley } 385592d50984SMatthew G. Knepley /* 2: Get geometric data */ 385692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 385792d50984SMatthew G. Knepley PetscObject obj; 385892d50984SMatthew G. Knepley PetscClassId id; 385992d50984SMatthew G. Knepley PetscBool fimp; 386092d50984SMatthew G. Knepley 38619566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 386292d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38639566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3865ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 38665f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 386792d50984SMatthew G. Knepley } 386892d50984SMatthew G. Knepley if (useFEM) { 38699566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 38709566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 387192d50984SMatthew G. Knepley if (maxDegree <= 1) { 38729566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 387348a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 387492d50984SMatthew G. Knepley } else { 38759566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 387692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 387792d50984SMatthew G. Knepley PetscObject obj; 387892d50984SMatthew G. Knepley PetscClassId id; 387992d50984SMatthew G. Knepley PetscBool fimp; 388092d50984SMatthew G. Knepley 38819566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 388292d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38839566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 388592d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 388692d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 388792d50984SMatthew G. Knepley 38889566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 38899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 38909566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 389192d50984SMatthew G. Knepley } 389292d50984SMatthew G. Knepley } 389392d50984SMatthew G. Knepley } 389492d50984SMatthew G. Knepley } 389592d50984SMatthew G. Knepley /* Loop over chunks */ 38969566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 38979566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 38989566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 389992d50984SMatthew G. Knepley numCells = cEnd - cStart; 390092d50984SMatthew G. Knepley numChunks = 1; 390192d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 390292d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 39036528b96dSMatthew G. Knepley key.label = NULL; 39046528b96dSMatthew G. Knepley key.value = 0; 390506ad1575SMatthew G. Knepley key.part = 0; 390692d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3907c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3908c0006e53SPatrick Farrell PetscReal *vol = NULL; 3909c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 391092d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 3911c0006e53SPatrick Farrell PetscInt numFaces = 0; 391292d50984SMatthew G. Knepley 391392d50984SMatthew G. Knepley /* Extract field coefficients */ 391492d50984SMatthew G. Knepley if (useFEM) { 39159566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 39169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 39179566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 39189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 391992d50984SMatthew G. Knepley } 392092d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 392192d50984SMatthew G. Knepley /* Loop over fields */ 392292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 392392d50984SMatthew G. Knepley PetscObject obj; 392492d50984SMatthew G. Knepley PetscClassId id; 392592d50984SMatthew G. Knepley PetscBool fimp; 392692d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 392792d50984SMatthew G. Knepley 39286528b96dSMatthew G. Knepley key.field = f; 39299566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 393092d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 39319566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 39329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 393392d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 393492d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 393592d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 393692d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 393792d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 393892d50984SMatthew G. Knepley PetscInt Nq, Nb; 393992d50984SMatthew G. Knepley 39409566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 39419566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 39429566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 394392d50984SMatthew G. Knepley blockSize = Nb; 394492d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 39459566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 394692d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 394792d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 394892d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 394992d50984SMatthew G. Knepley offset = numCells - Nr; 395092d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 395192d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 39529566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 39539566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 39549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 39559566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 39569566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 395792d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 395892d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 395992d50984SMatthew G. Knepley 396092d50984SMatthew G. Knepley Ne = numFaces; 396192d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 396292d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 39639566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 396463a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 396592d50984SMatthew G. Knepley } 396692d50984SMatthew G. Knepley /* Loop over domain */ 396792d50984SMatthew G. Knepley if (useFEM) { 396892d50984SMatthew G. Knepley /* Add elemVec to locX */ 396992d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 397092d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 397192d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 397292d50984SMatthew G. Knepley 39739566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 397492d50984SMatthew G. Knepley if (ghostLabel) { 397592d50984SMatthew G. Knepley PetscInt ghostVal; 397692d50984SMatthew G. Knepley 39779566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 397892d50984SMatthew G. Knepley if (ghostVal > 0) continue; 397992d50984SMatthew G. Knepley } 39809566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 398192d50984SMatthew G. Knepley } 398292d50984SMatthew G. Knepley } 398392d50984SMatthew G. Knepley /* Handle time derivative */ 398492d50984SMatthew G. Knepley if (locX_t) { 398592d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 398692d50984SMatthew G. Knepley 39879566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 39889566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 398992d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 399092d50984SMatthew G. Knepley PetscFV fv; 399192d50984SMatthew G. Knepley PetscObject obj; 399292d50984SMatthew G. Knepley PetscClassId id; 399392d50984SMatthew G. Knepley PetscInt pdim, d; 399492d50984SMatthew G. Knepley 39959566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 39969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 399792d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 399892d50984SMatthew G. Knepley fv = (PetscFV)obj; 39999566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 400092d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 400192d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 400292d50984SMatthew G. Knepley PetscScalar *u_t, *r; 400392d50984SMatthew G. Knepley 400492d50984SMatthew G. Knepley if (ghostLabel) { 400592d50984SMatthew G. Knepley PetscInt ghostVal; 400692d50984SMatthew G. Knepley 40079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 400892d50984SMatthew G. Knepley if (ghostVal > 0) continue; 400992d50984SMatthew G. Knepley } 40109566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 40119566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 401292d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 401392d50984SMatthew G. Knepley } 401492d50984SMatthew G. Knepley } 40159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 40169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 401792d50984SMatthew G. Knepley } 401892d50984SMatthew G. Knepley if (useFEM) { 40199566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 40209566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 402192d50984SMatthew G. Knepley } 402292d50984SMatthew G. Knepley } 40239566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 40249566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 402592d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 402692d50984SMatthew G. Knepley if (useFEM) { 402792d50984SMatthew G. Knepley if (maxDegree <= 1) { 40289566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 40299566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 403092d50984SMatthew G. Knepley } else { 403192d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 40329566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 40339566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 403492d50984SMatthew G. Knepley } 40359566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 403692d50984SMatthew G. Knepley } 403792d50984SMatthew G. Knepley } 40389566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 403992d50984SMatthew G. Knepley PetscFunctionReturn(0); 404092d50984SMatthew G. Knepley } 404192d50984SMatthew G. Knepley 4042a1cf66bbSMatthew G. Knepley /* 4043a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4044a1cf66bbSMatthew G. Knepley 4045a1cf66bbSMatthew G. Knepley X - The local solution vector 4046a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4047a1cf66bbSMatthew G. Knepley */ 4048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4049d71ae5a4SJacob Faibussowitsch { 4050a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4051a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4052a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4053a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4054a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4055a1cf66bbSMatthew G. Knepley Vec A; 4056a1cf66bbSMatthew G. Knepley DMField coordField; 4057a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4058a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4059a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4060a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4061e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4062a1cf66bbSMatthew G. Knepley const PetscInt *cells; 406306ad1575SMatthew G. Knepley PetscFormKey key; 40649b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4065a1cf66bbSMatthew G. Knepley 4066a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 40679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 40689566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 40699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 40709566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40719566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 40729a2a23afSMatthew G. Knepley if (A) { 40739566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 40749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 40759566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4076a1cf66bbSMatthew G. Knepley } 4077a1cf66bbSMatthew G. Knepley /* Get flags */ 40789566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 40799566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4080a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4081a1cf66bbSMatthew G. Knepley PetscObject disc; 4082a1cf66bbSMatthew G. Knepley PetscClassId id; 40839566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 40849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 40859371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 40869371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 40879371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 40889371c9d4SSatish Balay hasFV = PETSC_TRUE; 40899371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 40909371c9d4SSatish Balay } 4091a1cf66bbSMatthew G. Knepley } 40929566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 40939566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 40949566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4095a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4096a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 40979566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 40989566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 40999566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4100a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4101a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4102a1cf66bbSMatthew G. Knepley PetscFE fe; 4103a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4104a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4105a1cf66bbSMatthew G. Knepley 41069566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 41079566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 41089566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 41099566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 41109566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4111a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4112a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4113a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4114a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 41159566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4116a1cf66bbSMatthew G. Knepley } else { 4117a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4118a1cf66bbSMatthew G. Knepley numChunks = 1; 4119a1cf66bbSMatthew G. Knepley } 4120a1cf66bbSMatthew G. Knepley /* Get work space */ 4121a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 41229566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 41239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4124a1cf66bbSMatthew G. Knepley off = 0; 4125a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4126a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4127a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4128a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4129a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4130a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 413163a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4132a1cf66bbSMatthew G. Knepley /* Setup geometry */ 41339566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 41349566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 41359566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4136a1cf66bbSMatthew G. Knepley if (!qGeom) { 4137a1cf66bbSMatthew G. Knepley PetscFE fe; 4138a1cf66bbSMatthew G. Knepley 41399566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 41409566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 41419566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4142a1cf66bbSMatthew G. Knepley } 41439566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4144a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 41459566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 41469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 41476528b96dSMatthew G. Knepley key.label = NULL; 41486528b96dSMatthew G. Knepley key.value = 0; 414906ad1575SMatthew G. Knepley key.part = 0; 4150a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4151a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4152a1cf66bbSMatthew G. Knepley PetscInt c; 4153a1cf66bbSMatthew G. Knepley 4154a1cf66bbSMatthew G. Knepley /* Extract values */ 4155a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4156a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4157a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4158a1cf66bbSMatthew G. Knepley PetscInt i; 4159a1cf66bbSMatthew G. Knepley 4160a1cf66bbSMatthew G. Knepley if (X) { 41619566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4162a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 41639566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4164a1cf66bbSMatthew G. Knepley } 4165a1cf66bbSMatthew G. Knepley if (X_t) { 41669566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4167a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 41689566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4169a1cf66bbSMatthew G. Knepley } 4170a1cf66bbSMatthew G. Knepley if (dmAux) { 41719566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4172a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 41739566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4174a1cf66bbSMatthew G. Knepley } 4175a1cf66bbSMatthew G. Knepley } 4176a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4177a1cf66bbSMatthew G. Knepley PetscFE fe; 41789566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4179a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 41806528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 41819566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 41829566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 41839566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4184a1cf66bbSMatthew G. Knepley } 4185a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4186a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4187a1cf66bbSMatthew G. Knepley PetscFV fv; 4188a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4189a1cf66bbSMatthew G. Knepley 41909566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 41919566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 41929566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4193a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4194a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4195a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4196ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4197ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4198a1cf66bbSMatthew G. Knepley } 4199a1cf66bbSMatthew G. Knepley } 4200a1cf66bbSMatthew G. Knepley } 4201a1cf66bbSMatthew G. Knepley } 4202a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 42039371c9d4SSatish Balay if (hasDyn) { 42049371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 42059371c9d4SSatish Balay } 4206a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4207a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4208a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4209a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 42109566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 42119566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4212a1cf66bbSMatthew G. Knepley } 42139566063dSJacob Faibussowitsch if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 42149566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4215a1cf66bbSMatthew G. Knepley } 4216a1cf66bbSMatthew G. Knepley } 4217a1cf66bbSMatthew G. Knepley /* Cleanup */ 42189566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 42199566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 42209566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 42219566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 42229566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4223a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 42249566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4225a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 42269371c9d4SSatish Balay if (assembleJac) { 42279371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 42289371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 42299371c9d4SSatish Balay } 42309371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 42319371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 42329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 4233a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 4234a1cf66bbSMatthew G. Knepley } 42353e9753d6SMatthew G. Knepley 42363e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 42373e9753d6SMatthew G. Knepley 4238d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4239d71ae5a4SJacob Faibussowitsch { 42403e9753d6SMatthew G. Knepley PetscBool isPlex; 42413e9753d6SMatthew G. Knepley 42423e9753d6SMatthew G. Knepley PetscFunctionBegin; 42439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 42443e9753d6SMatthew G. Knepley if (isPlex) { 42453e9753d6SMatthew G. Knepley *plex = dm; 42469566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 42473e9753d6SMatthew G. Knepley } else { 42489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 42493e9753d6SMatthew G. Knepley if (!*plex) { 42509566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 42519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 42521baa6e33SBarry Smith if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 42533e9753d6SMatthew G. Knepley } else { 42549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 42553e9753d6SMatthew G. Knepley } 42563e9753d6SMatthew G. Knepley } 42573e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 42583e9753d6SMatthew G. Knepley } 42593e9753d6SMatthew G. Knepley 42603e9753d6SMatthew G. Knepley /*@ 42613e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 42623e9753d6SMatthew G. Knepley 42633e9753d6SMatthew G. Knepley Collective on DM 42643e9753d6SMatthew G. Knepley 42653e9753d6SMatthew G. Knepley Input Parameter: 42663e9753d6SMatthew G. Knepley . dm - The DM 42673e9753d6SMatthew G. Knepley 42683e9753d6SMatthew G. Knepley Output Parameters: 42693e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 42703e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 42713e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 42723e9753d6SMatthew G. Knepley 42733e9753d6SMatthew G. Knepley Level: developer 42743e9753d6SMatthew G. Knepley 4275db781477SPatrick Sanan .seealso: `DMTSSetRHSFunctionLocal()` 42763e9753d6SMatthew G. Knepley @*/ 4277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 4278d71ae5a4SJacob Faibussowitsch { 42793e9753d6SMatthew G. Knepley DM plex; 42803e9753d6SMatthew G. Knepley 42813e9753d6SMatthew G. Knepley PetscFunctionBegin; 42823e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42839566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 42849566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 42859566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 42869566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 42873e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 42883e9753d6SMatthew G. Knepley } 42893e9753d6SMatthew G. Knepley 42903e9753d6SMatthew G. Knepley /*@ 42913e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 42923e9753d6SMatthew G. Knepley 42933e9753d6SMatthew G. Knepley Collective on DM 42943e9753d6SMatthew G. Knepley 42953e9753d6SMatthew G. Knepley Input Parameters: 42963e9753d6SMatthew G. Knepley + dm - The DM 42973e9753d6SMatthew G. Knepley - fv - The PetscFV 42983e9753d6SMatthew G. Knepley 42993e9753d6SMatthew G. Knepley Output Parameter: 43003e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 43013e9753d6SMatthew G. Knepley 43023e9753d6SMatthew G. Knepley Level: developer 43033e9753d6SMatthew G. Knepley 4304db781477SPatrick Sanan .seealso: `DMPlexGetGeometryFVM()` 43053e9753d6SMatthew G. Knepley @*/ 4306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4307d71ae5a4SJacob Faibussowitsch { 43083e9753d6SMatthew G. Knepley DM plex; 43093e9753d6SMatthew G. Knepley PetscBool computeGradients; 43103e9753d6SMatthew G. Knepley 43113e9753d6SMatthew G. Knepley PetscFunctionBegin; 43123e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43133e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 43143e9753d6SMatthew G. Knepley PetscValidPointer(dmGrad, 3); 43159566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 43169371c9d4SSatish Balay if (!computeGradients) { 43179371c9d4SSatish Balay *dmGrad = NULL; 43189371c9d4SSatish Balay PetscFunctionReturn(0); 43199371c9d4SSatish Balay } 43209566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 43219566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 43229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 43233e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 43243e9753d6SMatthew G. Knepley } 43253e9753d6SMatthew G. Knepley 4326d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 4327d71ae5a4SJacob Faibussowitsch { 43283e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 43293e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 43303e9753d6SMatthew G. Knepley DMEnclosureType encAux; 43313e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 43323e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 43333e9753d6SMatthew G. Knepley Vec locA = NULL; 43343e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 43353e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 43363e9753d6SMatthew G. Knepley 43373e9753d6SMatthew G. Knepley PetscFunctionBegin; 43389566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 43399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 43409566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 43419566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 43429566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 43433e9753d6SMatthew G. Knepley if (locA) { 43443e9753d6SMatthew G. Knepley DM dmAux; 43453e9753d6SMatthew G. Knepley 43469566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 43479566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 43489566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 43499566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 43509566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 43519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 43523e9753d6SMatthew G. Knepley } 43530c290148SMatthew G. Knepley { 43543e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 43553e9753d6SMatthew G. Knepley PetscInt maxDegree; 43563e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 43573e9753d6SMatthew G. Knepley IS pointIS; 43583e9753d6SMatthew G. Knepley const PetscInt *points; 43593e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 43603e9753d6SMatthew G. Knepley 43619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 43620c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 43633e9753d6SMatthew G. Knepley { 43643e9753d6SMatthew G. Knepley IS isectIS; 43653e9753d6SMatthew G. Knepley 43663e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 43679566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 43689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 43693e9753d6SMatthew G. Knepley pointIS = isectIS; 43703e9753d6SMatthew G. Knepley } 43719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 43729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 43739566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a)); 43749566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 437548a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 43763e9753d6SMatthew G. Knepley if (!qGeom) { 43773e9753d6SMatthew G. Knepley PetscFE fe; 43783e9753d6SMatthew G. Knepley 43799566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 43809566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 43819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 43823e9753d6SMatthew G. Knepley } 43839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 43849566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 43853e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4386f15274beSMatthew Knepley const PetscInt point = points[face], *support; 43873e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4388f15274beSMatthew Knepley PetscInt i; 43893e9753d6SMatthew G. Knepley 43909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 43919566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 43923e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 43939566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 43943e9753d6SMatthew G. Knepley if (locX_t) { 43959566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 43963e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 43979566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 43983e9753d6SMatthew G. Knepley } 43993e9753d6SMatthew G. Knepley if (locA) { 44003e9753d6SMatthew G. Knepley PetscInt subp; 44013e9753d6SMatthew G. Knepley 44029566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 44039566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 44043e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 44059566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 44063e9753d6SMatthew G. Knepley } 44073e9753d6SMatthew G. Knepley } 44089566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 44093e9753d6SMatthew G. Knepley { 44103e9753d6SMatthew G. Knepley PetscFE fe; 44113e9753d6SMatthew G. Knepley PetscInt Nb; 44123e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 44133e9753d6SMatthew G. Knepley /* Conforming batches */ 44143e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 44153e9753d6SMatthew G. Knepley /* Remainder */ 44163e9753d6SMatthew G. Knepley PetscInt Nr, offset; 44173e9753d6SMatthew G. Knepley 44189566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 44199566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 44209566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 44213e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 44223e9753d6SMatthew G. Knepley blockSize = Nb; 44233e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 44249566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 44253e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 44263e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 44273e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 44283e9753d6SMatthew G. Knepley offset = numFaces - Nr; 44299566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 44309566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 44319566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 44329566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 44339566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim])); 44349566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 44353e9753d6SMatthew G. Knepley } 44363e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 44373e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 44383e9753d6SMatthew G. Knepley 44399566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim])); 44409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 44419566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 44423e9753d6SMatthew G. Knepley } 44439566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 44449566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 44459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 44469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 44479566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 44483e9753d6SMatthew G. Knepley } 44490c290148SMatthew G. Knepley end: 44509566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 44519566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 44523e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 44533e9753d6SMatthew G. Knepley } 44543e9753d6SMatthew G. Knepley 4455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 4456d71ae5a4SJacob Faibussowitsch { 44573e9753d6SMatthew G. Knepley DMField coordField; 44583e9753d6SMatthew G. Knepley DMLabel depthLabel; 44593e9753d6SMatthew G. Knepley IS facetIS; 44603e9753d6SMatthew G. Knepley PetscInt dim; 44613e9753d6SMatthew G. Knepley 44623e9753d6SMatthew G. Knepley PetscFunctionBegin; 44639566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 44669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44679566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 44689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 44693e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 44703e9753d6SMatthew G. Knepley } 44713e9753d6SMatthew G. Knepley 4472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4473d71ae5a4SJacob Faibussowitsch { 44743e9753d6SMatthew G. Knepley PetscDS prob; 44753e9753d6SMatthew G. Knepley PetscInt numBd, bd; 44763e9753d6SMatthew G. Knepley DMField coordField = NULL; 44773e9753d6SMatthew G. Knepley IS facetIS = NULL; 44783e9753d6SMatthew G. Knepley DMLabel depthLabel; 44793e9753d6SMatthew G. Knepley PetscInt dim; 44803e9753d6SMatthew G. Knepley 44813e9753d6SMatthew G. Knepley PetscFunctionBegin; 44829566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 44839566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 44869566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 44873e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 448845480ffeSMatthew G. Knepley PetscWeakForm wf; 44893e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 44903e9753d6SMatthew G. Knepley DMLabel label; 44913e9753d6SMatthew G. Knepley const PetscInt *values; 44920c290148SMatthew G. Knepley PetscInt field, numValues, v; 44933e9753d6SMatthew G. Knepley PetscObject obj; 44943e9753d6SMatthew G. Knepley PetscClassId id; 44950c290148SMatthew G. Knepley PetscFormKey key; 44963e9753d6SMatthew G. Knepley 44979566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 44983d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 44999566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 45009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 45013d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 45023e9753d6SMatthew G. Knepley if (!facetIS) { 45033e9753d6SMatthew G. Knepley DMLabel depthLabel; 45043e9753d6SMatthew G. Knepley PetscInt dim; 45053e9753d6SMatthew G. Knepley 45069566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 45079566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 45089566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 45093e9753d6SMatthew G. Knepley } 45109566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 45110c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 45120c290148SMatthew G. Knepley key.label = label; 45130c290148SMatthew G. Knepley key.value = values[v]; 45140c290148SMatthew G. Knepley key.field = field; 45150c290148SMatthew G. Knepley key.part = 0; 45169566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 45170c290148SMatthew G. Knepley } 45183e9753d6SMatthew G. Knepley } 45199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 45203e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 45213e9753d6SMatthew G. Knepley } 45223e9753d6SMatthew G. Knepley 4523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4524d71ae5a4SJacob Faibussowitsch { 45253e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 45263e9753d6SMatthew G. Knepley const char *name = "Residual"; 45273e9753d6SMatthew G. Knepley DM dmAux = NULL; 45283e9753d6SMatthew G. Knepley DM dmGrad = NULL; 45293e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 45306528b96dSMatthew G. Knepley PetscDS ds = NULL; 45316528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 45323e9753d6SMatthew G. Knepley PetscSection section = NULL; 45333e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 45343e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 45353e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 45363e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 45373e9753d6SMatthew G. Knepley PetscFVCellGeom *cgeomFVM = NULL; 45383e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeomFVM = NULL; 45393e9753d6SMatthew G. Knepley DMField coordField = NULL; 45403e9753d6SMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL; 45413e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 45423e9753d6SMatthew G. Knepley IS chunkIS; 45433e9753d6SMatthew G. Knepley const PetscInt *cells; 45443e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 45453e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 45463e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 45473e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 45483e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 45493e9753d6SMatthew G. Knepley 45503e9753d6SMatthew G. Knepley PetscFunctionBegin; 4551e04ae0b4SMatthew G. Knepley if (!cellIS) PetscFunctionReturn(0); 45529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 45533e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 45543e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 45553e9753d6SMatthew G. Knepley /* FEM+FVM */ 45569566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 45579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 45583e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 45599566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 45609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 45619566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 45629566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 45639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 45649566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 45653e9753d6SMatthew G. Knepley if (locA) { 45663e9753d6SMatthew G. Knepley PetscInt subcell; 45679566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 45681059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 45699566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux, subcell, &dsAux)); 45709566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 45713e9753d6SMatthew G. Knepley } 45723e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 45733e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45743e9753d6SMatthew G. Knepley PetscObject obj; 45753e9753d6SMatthew G. Knepley PetscClassId id; 45763e9753d6SMatthew G. Knepley PetscBool fimp; 45773e9753d6SMatthew G. Knepley 45789566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 45793e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 45809566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 45819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4582ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 45839371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 45849371c9d4SSatish Balay useFVM = PETSC_TRUE; 45859371c9d4SSatish Balay fvm = (PetscFV)obj; 45869371c9d4SSatish Balay } 45873e9753d6SMatthew G. Knepley } 45883e9753d6SMatthew G. Knepley if (useFEM) { 45899566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 45909566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 45913e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 45929566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 459348a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 45943e9753d6SMatthew G. Knepley } else { 45959566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 45963e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45973e9753d6SMatthew G. Knepley PetscObject obj; 45983e9753d6SMatthew G. Knepley PetscClassId id; 45993e9753d6SMatthew G. Knepley PetscBool fimp; 46003e9753d6SMatthew G. Knepley 46019566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 46023e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 46039566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46053e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46063e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 46073e9753d6SMatthew G. Knepley 46089566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 46099566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 46109566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 46113e9753d6SMatthew G. Knepley } 46123e9753d6SMatthew G. Knepley } 46133e9753d6SMatthew G. Knepley } 46143e9753d6SMatthew G. Knepley } 46153e9753d6SMatthew G. Knepley if (useFVM) { 46169566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 46179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM)); 46189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 46193e9753d6SMatthew G. Knepley /* Reconstruct and limit cell gradients */ 46209566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 46213e9753d6SMatthew G. Knepley if (dmGrad) { 46229566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 46239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 46249566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 46253e9753d6SMatthew G. Knepley /* Communicate gradient values */ 46269566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 46279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 46289566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 46299566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 46303e9753d6SMatthew G. Knepley } 46313e9753d6SMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 46329566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 46333e9753d6SMatthew G. Knepley } 46343e9753d6SMatthew G. Knepley /* Loop over chunks */ 46359566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 46363e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 46373e9753d6SMatthew G. Knepley numChunks = 1; 46383e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 46393e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 46403e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 46413e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 46423e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 46433e9753d6SMatthew G. Knepley PetscReal *vol; 46443e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 46453e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 46463e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 46473e9753d6SMatthew G. Knepley 46483e9753d6SMatthew G. Knepley /* Extract field coefficients */ 46493e9753d6SMatthew G. Knepley if (useFEM) { 46509566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 46519566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 46529566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 46539566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 46543e9753d6SMatthew G. Knepley } 46553e9753d6SMatthew G. Knepley if (useFVM) { 46569566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 46579566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 46589566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 46599566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 46609566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 46619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 46623e9753d6SMatthew G. Knepley } 46633e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 46643e9753d6SMatthew G. Knepley /* Loop over fields */ 46653e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 46663e9753d6SMatthew G. Knepley PetscObject obj; 46673e9753d6SMatthew G. Knepley PetscClassId id; 46683e9753d6SMatthew G. Knepley PetscBool fimp; 46693e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 46703e9753d6SMatthew G. Knepley 46716528b96dSMatthew G. Knepley key.field = f; 46729566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 46733e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 46749566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46763e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46773e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 46783e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 46793e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 46803e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 46813e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 46823e9753d6SMatthew G. Knepley 46839566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 46849566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 46859566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 46863e9753d6SMatthew G. Knepley blockSize = Nb; 46873e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 46889566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 46893e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 46903e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 46913e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 46923e9753d6SMatthew G. Knepley offset = numCells - Nr; 46933e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 46943e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 46959566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 46969566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 46979566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 46999566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 47003e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 47013e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 47023e9753d6SMatthew G. Knepley 47033e9753d6SMatthew G. Knepley Ne = numFaces; 47043e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 47053e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 47069566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 470763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 47083e9753d6SMatthew G. Knepley } 47093e9753d6SMatthew G. Knepley /* Loop over domain */ 47103e9753d6SMatthew G. Knepley if (useFEM) { 47113e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 47123e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 47133e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 47143e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 47153e9753d6SMatthew G. Knepley 47169566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 47173e9753d6SMatthew G. Knepley if (ghostLabel) { 47183e9753d6SMatthew G. Knepley PetscInt ghostVal; 47193e9753d6SMatthew G. Knepley 47209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 47213e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 47223e9753d6SMatthew G. Knepley } 47239566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 47243e9753d6SMatthew G. Knepley } 47253e9753d6SMatthew G. Knepley } 47263e9753d6SMatthew G. Knepley if (useFVM) { 47273e9753d6SMatthew G. Knepley PetscScalar *fa; 47283e9753d6SMatthew G. Knepley PetscInt iface; 47293e9753d6SMatthew G. Knepley 47309566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 47313e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47323e9753d6SMatthew G. Knepley PetscFV fv; 47333e9753d6SMatthew G. Knepley PetscObject obj; 47343e9753d6SMatthew G. Knepley PetscClassId id; 47353e9753d6SMatthew G. Knepley PetscInt foff, pdim; 47363e9753d6SMatthew G. Knepley 47379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47389566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 47399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47403e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 47413e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 47429566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 47433e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 47443e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 47453e9753d6SMatthew G. Knepley const PetscInt *scells; 47463e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 47473e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 47483e9753d6SMatthew G. Knepley 47499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 47509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 47519566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 47523e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 47539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 47549566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 47559566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 47569566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 47579566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 47583e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 47593e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 47603e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 47613e9753d6SMatthew G. Knepley } 47623e9753d6SMatthew G. Knepley ++iface; 47633e9753d6SMatthew G. Knepley } 47643e9753d6SMatthew G. Knepley } 47659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 47663e9753d6SMatthew G. Knepley } 47673e9753d6SMatthew G. Knepley /* Handle time derivative */ 47683e9753d6SMatthew G. Knepley if (locX_t) { 47693e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 47703e9753d6SMatthew G. Knepley 47719566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 47729566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 47733e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47743e9753d6SMatthew G. Knepley PetscFV fv; 47753e9753d6SMatthew G. Knepley PetscObject obj; 47763e9753d6SMatthew G. Knepley PetscClassId id; 47773e9753d6SMatthew G. Knepley PetscInt pdim, d; 47783e9753d6SMatthew G. Knepley 47799566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47813e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 47823e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 47839566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 47843e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 47853e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 47863e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 47873e9753d6SMatthew G. Knepley 47883e9753d6SMatthew G. Knepley if (ghostLabel) { 47893e9753d6SMatthew G. Knepley PetscInt ghostVal; 47903e9753d6SMatthew G. Knepley 47919566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 47923e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 47933e9753d6SMatthew G. Knepley } 47949566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 47959566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 47963e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 47973e9753d6SMatthew G. Knepley } 47983e9753d6SMatthew G. Knepley } 47999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 48009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 48013e9753d6SMatthew G. Knepley } 48023e9753d6SMatthew G. Knepley if (useFEM) { 48039566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 48049566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 48053e9753d6SMatthew G. Knepley } 48063e9753d6SMatthew G. Knepley if (useFVM) { 48079566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 48089566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 48099566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 48109566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 48119566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 48123e9753d6SMatthew G. Knepley } 48133e9753d6SMatthew G. Knepley } 48149566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 48159566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 48163e9753d6SMatthew G. Knepley 48173e9753d6SMatthew G. Knepley if (useFEM) { 48189566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 48193e9753d6SMatthew G. Knepley 48203e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 48219566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 48229566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 48233e9753d6SMatthew G. Knepley } else { 48243e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 48259566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 48269566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 48273e9753d6SMatthew G. Knepley } 48289566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 48293e9753d6SMatthew G. Knepley } 48303e9753d6SMatthew G. Knepley } 48313e9753d6SMatthew G. Knepley 48323e9753d6SMatthew G. Knepley /* FEM */ 48333e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 48343e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 48353e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 48363e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 48373e9753d6SMatthew G. Knepley /* Extract coefficients */ 48383e9753d6SMatthew G. Knepley /* Loop over fields */ 48393e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 48403e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 48413e9753d6SMatthew G. Knepley /* Loop over subdomain */ 48423e9753d6SMatthew G. Knepley /* Loop over quad points */ 48433e9753d6SMatthew G. Knepley /* Transform coords to real space */ 48443e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 48453e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 48463e9753d6SMatthew G. Knepley /* Transform residual to real space */ 48473e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 48483e9753d6SMatthew G. Knepley /* Loop over domain */ 48493e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 48503e9753d6SMatthew G. Knepley 48513e9753d6SMatthew G. Knepley /* FVM */ 48523e9753d6SMatthew G. Knepley /* Get geometric data */ 48533e9753d6SMatthew G. Knepley /* If using gradients */ 48543e9753d6SMatthew G. Knepley /* Compute gradient data */ 48553e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48563e9753d6SMatthew G. Knepley /* Count computational faces */ 48573e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 48583e9753d6SMatthew G. Knepley /* Loop over domain cells */ 48593e9753d6SMatthew G. Knepley /* Limit cell gradients */ 48603e9753d6SMatthew G. Knepley /* Handle boundary values */ 48613e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48623e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 48633e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 48643e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48653e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 48663e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 48673e9753d6SMatthew G. Knepley if (mesh->printFEM) { 48683e9753d6SMatthew G. Knepley Vec locFbc; 48693e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 48703e9753d6SMatthew G. Knepley PetscScalar *zeroes; 48713e9753d6SMatthew G. Knepley 48729566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 48739566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 48749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 48759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 48769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 487748a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 48789566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 48799566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 48809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 48813e9753d6SMatthew G. Knepley } 48829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 48833e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 48843e9753d6SMatthew G. Knepley } 48853e9753d6SMatthew G. Knepley 48866528b96dSMatthew G. Knepley /* 48876528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 48886528b96dSMatthew G. Knepley 48896528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 48906528b96dSMatthew G. Knepley 48916528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 48926528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 48936528b96dSMatthew G. Knepley 48946528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 48956528b96dSMatthew G. Knepley */ 4896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4897d71ae5a4SJacob Faibussowitsch { 48983e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 48993e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 490004c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 49013e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 49026528b96dSMatthew G. Knepley PetscDS ds = NULL; 49036528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 490404c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 4905b2ab40e6SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 49063e9753d6SMatthew G. Knepley PetscSection section = NULL; 49073e9753d6SMatthew G. Knepley DMField coordField = NULL; 4908b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 49093e9753d6SMatthew G. Knepley PetscScalar *elemVec; 49103e9753d6SMatthew G. Knepley IS chunkIS; 49113e9753d6SMatthew G. Knepley const PetscInt *cells; 49123e9753d6SMatthew G. Knepley PetscInt *faces; 49133e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 49146528b96dSMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 49153e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 49163e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 49173e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 49183e9753d6SMatthew G. Knepley 49193e9753d6SMatthew G. Knepley PetscFunctionBegin; 49205fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 49215fedec97SMatthew G. Knepley const char *name; 49229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 492363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 49245fedec97SMatthew G. Knepley } 49259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 49263e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 49273e9753d6SMatthew G. Knepley /* FEM */ 49289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 49299566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 49303e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 49319566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 49329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 49331059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 49349566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 49359566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 49369566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 493704c51a94SMatthew G. Knepley if (locA[2]) { 49381059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 49391059d808SMatthew G. Knepley 49409566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 49411059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 49429566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 49436528b96dSMatthew G. Knepley { 49446528b96dSMatthew G. Knepley const PetscInt *cone; 49456528b96dSMatthew G. Knepley PetscInt c; 49466528b96dSMatthew G. Knepley 49471059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 49486528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 49496528b96dSMatthew G. Knepley const PetscInt *support; 49506528b96dSMatthew G. Knepley PetscInt ssize, s; 49516528b96dSMatthew G. Knepley 49529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 49539566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 49541059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 49551059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 49561059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 49571059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 49589566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 4959c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 49609566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 4961ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 49629566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 49639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 49646528b96dSMatthew G. Knepley } 49656528b96dSMatthew G. Knepley } 49663e9753d6SMatthew G. Knepley } 49673e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 49689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 49699566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 49703e9753d6SMatthew G. Knepley if (maxDegree > 1) { 49719566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 49723e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49733e9753d6SMatthew G. Knepley PetscFE fe; 49743e9753d6SMatthew G. Knepley 49759566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 49763e9753d6SMatthew G. Knepley if (fe) { 49779566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 49789566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 49793e9753d6SMatthew G. Knepley } 49803e9753d6SMatthew G. Knepley } 49813e9753d6SMatthew G. Knepley } 49823e9753d6SMatthew G. Knepley /* Loop over chunks */ 49833e9753d6SMatthew G. Knepley cellChunkSize = numCells; 49843e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 4985a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1 * cellChunkSize, &faces)); 4986a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 49873e9753d6SMatthew G. Knepley /* Extract field coefficients */ 49883e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 49899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 49909566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 49919566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVec)); 49923e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 49933e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 49943e9753d6SMatthew G. Knepley 49959566063dSJacob Faibussowitsch PetscCall(PetscMemzero(elemVec, cellChunkSize * totDim * sizeof(PetscScalar))); 49963e9753d6SMatthew G. Knepley /* Get faces */ 49973e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 49983e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 49993e9753d6SMatthew G. Knepley const PetscInt *cone; 50009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 5001a4158a15SMatthew G. Knepley faces[0 * cellChunkSize + (c - cS)] = cone[0]; 5002a4158a15SMatthew G. Knepley /*faces[1*cellChunkSize+(c-cS)] = cone[1];*/ 50033e9753d6SMatthew G. Knepley } 5004a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER)); 50053e9753d6SMatthew G. Knepley /* Get geometric data */ 50063e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50079566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 50089566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 50093e9753d6SMatthew G. Knepley } else { 50103e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50119566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 50123e9753d6SMatthew G. Knepley } 50133e9753d6SMatthew G. Knepley } 50143e9753d6SMatthew G. Knepley /* Loop over fields */ 50153e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50163e9753d6SMatthew G. Knepley PetscFE fe; 50173e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 5018148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 50193e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 50203e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 50215fedec97SMatthew G. Knepley PetscBool isCohesiveField; 50223e9753d6SMatthew G. Knepley 50239566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 50243e9753d6SMatthew G. Knepley if (!fe) continue; 50259566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 50269566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 50279566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 50283e9753d6SMatthew G. Knepley blockSize = Nb; 50293e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 50309566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 50313e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 50323e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 50333e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 50343e9753d6SMatthew G. Knepley offset = numCells - Nr; 50359566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 50369566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom)); 50379566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 50385fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 50396528b96dSMatthew G. Knepley key[0].field = f; 50406528b96dSMatthew G. Knepley key[1].field = f; 50415fedec97SMatthew G. Knepley key[2].field = f; 50429566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVec)); 50439566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVec[offset * totDim])); 50449566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVec)); 50459566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVec[offset * totDim])); 50469566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVec)); 50479566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVec[offset * totDim])); 50489566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 50499566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 50503e9753d6SMatthew G. Knepley } 50513e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 50523e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 50533e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 50543e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 50553e9753d6SMatthew G. Knepley 50569566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 50573e9753d6SMatthew G. Knepley if (ghostLabel) { 50583e9753d6SMatthew G. Knepley PetscInt ghostVal; 50593e9753d6SMatthew G. Knepley 50609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 50613e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 50623e9753d6SMatthew G. Knepley } 50639566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 50643e9753d6SMatthew G. Knepley } 50653e9753d6SMatthew G. Knepley } 50669566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 50679566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 50689566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 50699566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 50709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 50719566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 50723e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50739566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 50749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 50753e9753d6SMatthew G. Knepley } else { 50763e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50779566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 50789566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 50793e9753d6SMatthew G. Knepley } 50809566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 50813e9753d6SMatthew G. Knepley } 50829566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 50833e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 50843e9753d6SMatthew G. Knepley } 50853e9753d6SMatthew G. Knepley 5086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 5087d71ae5a4SJacob Faibussowitsch { 50883e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 50893e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 50903e9753d6SMatthew G. Knepley DMEnclosureType encAux; 50913e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 50923e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5093e432b41dSStefano Zampini PetscSection globalSection; 50943e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 50953e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL; 50963e9753d6SMatthew G. Knepley PetscInt v; 50973e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5098e432b41dSStefano Zampini PetscBool transform; 50993e9753d6SMatthew G. Knepley 51003e9753d6SMatthew G. Knepley PetscFunctionBegin; 51019566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 51029566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 51039566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 51049566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 51059566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 51069566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 51079566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 51089566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 51099566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 51103e9753d6SMatthew G. Knepley if (locA) { 51113e9753d6SMatthew G. Knepley DM dmAux; 51123e9753d6SMatthew G. Knepley 51139566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 51149566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 51159566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 51169566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 51179566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 51189566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 51193e9753d6SMatthew G. Knepley } 51203e9753d6SMatthew G. Knepley 51219566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 51223e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 51233e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 51243e9753d6SMatthew G. Knepley PetscInt maxDegree; 51253e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 51263e9753d6SMatthew G. Knepley IS pointIS; 51273e9753d6SMatthew G. Knepley const PetscInt *points; 512806ad1575SMatthew G. Knepley PetscFormKey key; 51293e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 51303e9753d6SMatthew G. Knepley 513145480ffeSMatthew G. Knepley key.label = label; 513245480ffeSMatthew G. Knepley key.value = values[v]; 513306ad1575SMatthew G. Knepley key.part = 0; 51349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 51353e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 51363e9753d6SMatthew G. Knepley { 51373e9753d6SMatthew G. Knepley IS isectIS; 51383e9753d6SMatthew G. Knepley 51393e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 51409566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 51419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 51423e9753d6SMatthew G. Knepley pointIS = isectIS; 51433e9753d6SMatthew G. Knepley } 51449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 51459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 51469566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a)); 51479566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 514848a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 51493e9753d6SMatthew G. Knepley if (!qGeom) { 51503e9753d6SMatthew G. Knepley PetscFE fe; 51513e9753d6SMatthew G. Knepley 51529566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 51539566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 51549566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 51553e9753d6SMatthew G. Knepley } 51569566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 51579566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 51583e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5159f15274beSMatthew Knepley const PetscInt point = points[face], *support; 51603e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5161f15274beSMatthew Knepley PetscInt i; 51623e9753d6SMatthew G. Knepley 51639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 51649566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 51653e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 51669566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 51673e9753d6SMatthew G. Knepley if (locX_t) { 51689566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 51693e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 51709566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 51713e9753d6SMatthew G. Knepley } 51723e9753d6SMatthew G. Knepley if (locA) { 51733e9753d6SMatthew G. Knepley PetscInt subp; 51749566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 51759566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 51763e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 51779566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 51783e9753d6SMatthew G. Knepley } 51793e9753d6SMatthew G. Knepley } 51809566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 51813e9753d6SMatthew G. Knepley { 51823e9753d6SMatthew G. Knepley PetscFE fe; 51833e9753d6SMatthew G. Knepley PetscInt Nb; 51843e9753d6SMatthew G. Knepley /* Conforming batches */ 51853e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 51863e9753d6SMatthew G. Knepley /* Remainder */ 51873e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 51883e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 51893e9753d6SMatthew G. Knepley 51909566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 51919566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 51929566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 51933e9753d6SMatthew G. Knepley blockSize = Nb; 51943e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 51959566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 51963e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 51973e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 51983e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 51993e9753d6SMatthew G. Knepley offset = numFaces - Nr; 52009566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 52013e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 520245480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 52039566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 52043e9753d6SMatthew G. Knepley } 52059566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 52063e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 520745480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 52089566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim])); 52093e9753d6SMatthew G. Knepley } 52109566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 52113e9753d6SMatthew G. Knepley } 52123e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 52133e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 52143e9753d6SMatthew G. Knepley 52153e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 52169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 52179566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 52189566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 52199566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 52203e9753d6SMatthew G. Knepley } 52219566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 52229566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 52239566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 52249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 52259566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemMat, a)); 52263e9753d6SMatthew G. Knepley } 52279566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 52289566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 52293e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 52303e9753d6SMatthew G. Knepley } 52313e9753d6SMatthew G. Knepley 5232d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 5233d71ae5a4SJacob Faibussowitsch { 52343e9753d6SMatthew G. Knepley DMField coordField; 52353e9753d6SMatthew G. Knepley DMLabel depthLabel; 52363e9753d6SMatthew G. Knepley IS facetIS; 52373e9753d6SMatthew G. Knepley PetscInt dim; 52383e9753d6SMatthew G. Knepley 52393e9753d6SMatthew G. Knepley PetscFunctionBegin; 52409566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 52419566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 52429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 52439566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52449566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 52459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 52463e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 52473e9753d6SMatthew G. Knepley } 52483e9753d6SMatthew G. Knepley 5249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 5250d71ae5a4SJacob Faibussowitsch { 52513e9753d6SMatthew G. Knepley PetscDS prob; 52523e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 52533e9753d6SMatthew G. Knepley DMLabel depthLabel; 52543e9753d6SMatthew G. Knepley DMField coordField = NULL; 52553e9753d6SMatthew G. Knepley IS facetIS; 52563e9753d6SMatthew G. Knepley 52573e9753d6SMatthew G. Knepley PetscFunctionBegin; 52589566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 52599566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 52609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 52619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 52629566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 52639566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52643e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 526545480ffeSMatthew G. Knepley PetscWeakForm wf; 52663e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 52673e9753d6SMatthew G. Knepley DMLabel label; 52683e9753d6SMatthew G. Knepley const PetscInt *values; 52693e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 52703e9753d6SMatthew G. Knepley PetscObject obj; 52713e9753d6SMatthew G. Knepley PetscClassId id; 52723e9753d6SMatthew G. Knepley 52739566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 52743d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 52759566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 52769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 52773d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 52789566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 52793e9753d6SMatthew G. Knepley } 52809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 52813e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 52823e9753d6SMatthew G. Knepley } 52833e9753d6SMatthew G. Knepley 5284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user) 5285d71ae5a4SJacob Faibussowitsch { 52863e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 52873e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 52889a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 52893e9753d6SMatthew G. Knepley DMEnclosureType encAux; 52903e9753d6SMatthew G. Knepley Vec A, tv; 52913e9753d6SMatthew G. Knepley DMField coordField; 52923e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5293e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 52943e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 52953e9753d6SMatthew G. Knepley const PetscInt *cells; 52963e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 529728351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5298e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 52993e9753d6SMatthew G. Knepley 53003e9753d6SMatthew G. Knepley PetscFunctionBegin; 5301e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 53029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 53039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 53049566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 53059566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 53069566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 53079566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 53089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 53099566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 53109566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 53119566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 53129566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 53139566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 53149566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 53153e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 53163e9753d6SMatthew G. Knepley only assemble the Jacobian */ 53173e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 53189566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 53193e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 53209566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 53219a2a23afSMatthew G. Knepley if (A) { 53229566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 53239566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 53249566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 53259566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ionAux)); 53269566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 53279566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 53283e9753d6SMatthew G. Knepley } 53299566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD)); 53309566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 53319566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 53323e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 53333e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 53343e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 53353e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 53363e9753d6SMatthew G. Knepley PetscInt i; 53373e9753d6SMatthew G. Knepley 53389566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 53393e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 53409566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 53413e9753d6SMatthew G. Knepley if (X_t) { 53429566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 53433e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 53449566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 53453e9753d6SMatthew G. Knepley } 53463e9753d6SMatthew G. Knepley if (dmAux) { 53473e9753d6SMatthew G. Knepley PetscInt subcell; 53489566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 53499566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 53503e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 53519566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 53523e9753d6SMatthew G. Knepley } 53533e9753d6SMatthew G. Knepley } 53549566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 53559566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 53569566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 53573e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 53583e9753d6SMatthew G. Knepley PetscClassId id; 53593e9753d6SMatthew G. Knepley PetscFE fe; 53603e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 53613e9753d6SMatthew G. Knepley PetscInt Nb; 53623e9753d6SMatthew G. Knepley /* Conforming batches */ 53633e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 53643e9753d6SMatthew G. Knepley /* Remainder */ 53653e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 53663e9753d6SMatthew G. Knepley PetscInt maxDegree; 53673e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 53683e9753d6SMatthew G. Knepley 53699566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 53709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 53719371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 53729371c9d4SSatish Balay hasFV = PETSC_TRUE; 53739371c9d4SSatish Balay continue; 53749371c9d4SSatish Balay } 53759566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 53769566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 53779566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 537848a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 53793e9753d6SMatthew G. Knepley if (!qGeom) { 53809566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 53819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 53823e9753d6SMatthew G. Knepley } 53839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 53849566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 53853e9753d6SMatthew G. Knepley blockSize = Nb; 53863e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 53879566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 53883e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 53893e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 53903e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 53913e9753d6SMatthew G. Knepley offset = numCells - Nr; 53929566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 53939566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 53943e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 53956528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 53963e9753d6SMatthew G. Knepley if (hasJac) { 53979566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 53989566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim])); 53993e9753d6SMatthew G. Knepley } 54003e9753d6SMatthew G. Knepley if (hasPrec) { 54019566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 54029566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatP[offset * totDim * totDim])); 54033e9753d6SMatthew G. Knepley } 54043e9753d6SMatthew G. Knepley if (hasDyn) { 54059566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 54069566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 54073e9753d6SMatthew G. Knepley } 54083e9753d6SMatthew G. Knepley } 54099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 54109566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 54119566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 54129566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 54133e9753d6SMatthew G. Knepley } 54143e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 54159371c9d4SSatish Balay if (hasDyn) { 54169371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 54179371c9d4SSatish Balay } 54183e9753d6SMatthew G. Knepley if (hasFV) { 54193e9753d6SMatthew G. Knepley PetscClassId id; 54203e9753d6SMatthew G. Knepley PetscFV fv; 54213e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 54223e9753d6SMatthew G. Knepley 54233e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 54249566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 54259566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 54269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 54273e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 54283e9753d6SMatthew G. Knepley /* Put in the identity */ 54299566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 54303e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 54313e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 54323e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 54333e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 54343e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 54353e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 54363e9753d6SMatthew G. Knepley if (hasPrec) { 5437ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 54383e9753d6SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = 1.0; 54399371c9d4SSatish Balay } else { 54409371c9d4SSatish Balay elemMat[eOffset + i * totDim + i] = 1.0; 54419371c9d4SSatish Balay } 54423e9753d6SMatthew G. Knepley } 54433e9753d6SMatthew G. Knepley } 54443e9753d6SMatthew G. Knepley } 54453e9753d6SMatthew G. Knepley } 54463e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 54479566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 54483e9753d6SMatthew G. Knepley } 54493e9753d6SMatthew G. Knepley /* Insert values into matrix */ 54503e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 54513e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 54523e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 54533e9753d6SMatthew G. Knepley 54543e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 54559566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 54563e9753d6SMatthew G. Knepley if (hasPrec) { 54573e9753d6SMatthew G. Knepley if (hasJac) { 54589566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 54599566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 54603e9753d6SMatthew G. Knepley } 54619566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 54629566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 54633e9753d6SMatthew G. Knepley } else { 54643e9753d6SMatthew G. Knepley if (hasJac) { 54659566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 54669566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 54673e9753d6SMatthew G. Knepley } 54683e9753d6SMatthew G. Knepley } 54693e9753d6SMatthew G. Knepley } 54709566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 54719566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 54729566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 54733e9753d6SMatthew G. Knepley if (dmAux) { 54749566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 54759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 54763e9753d6SMatthew G. Knepley } 54773e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 54789566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 54793e9753d6SMatthew G. Knepley /* Assemble matrix */ 54809371c9d4SSatish Balay end : { 5481e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 5482e04ae0b4SMatthew G. Knepley 5483e04ae0b4SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 54843e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 54859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 54869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 54873e9753d6SMatthew G. Knepley } 5488e04ae0b4SMatthew G. Knepley } 54899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 54909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 54919566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 54923e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 54933e9753d6SMatthew G. Knepley } 54943e9753d6SMatthew G. Knepley 5495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 5496d71ae5a4SJacob Faibussowitsch { 54973e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 54983e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 5499148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 5500148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 55013e9753d6SMatthew G. Knepley DM plex = NULL; 55023e9753d6SMatthew G. Knepley DM plexA = NULL; 5503148442b3SMatthew G. Knepley PetscDS ds = NULL; 5504148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 5505148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 55063e9753d6SMatthew G. Knepley PetscSection section = NULL; 5507148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 55083e9753d6SMatthew G. Knepley DMField coordField = NULL; 5509148442b3SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a[3]; 55103e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP; 5511e432b41dSStefano Zampini PetscSection globalSection; 55123e9753d6SMatthew G. Knepley IS chunkIS; 55133e9753d6SMatthew G. Knepley const PetscInt *cells; 55143e9753d6SMatthew G. Knepley PetscInt *faces; 55153e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 5516148442b3SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 55173e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 55183e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 55193e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 5520e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 55213e9753d6SMatthew G. Knepley 55223e9753d6SMatthew G. Knepley PetscFunctionBegin; 55235fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 55245fedec97SMatthew G. Knepley const char *name; 55259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 552663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 55275fedec97SMatthew G. Knepley } 55289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 55299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 55309566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 55319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 55329566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 55339566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 55349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 55351059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 55369566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 55379566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 55389566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 55399566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 55409566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 5541148442b3SMatthew G. Knepley if (locA[2]) { 55421059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 55431059d808SMatthew G. Knepley 55449566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 55459566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 55469566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 55471059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 55489566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 5549148442b3SMatthew G. Knepley { 5550148442b3SMatthew G. Knepley const PetscInt *cone; 5551148442b3SMatthew G. Knepley PetscInt c; 5552148442b3SMatthew G. Knepley 55531059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 5554148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 5555148442b3SMatthew G. Knepley const PetscInt *support; 5556148442b3SMatthew G. Knepley PetscInt ssize, s; 5557148442b3SMatthew G. Knepley 55589566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 55599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 55601059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 55611059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 55621059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 55631059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 55649566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 55659566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5566ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 55679566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 55689566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 5569148442b3SMatthew G. Knepley } 5570148442b3SMatthew G. Knepley } 55713e9753d6SMatthew G. Knepley } 55729566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 55739566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 55743e9753d6SMatthew G. Knepley if (maxDegree > 1) { 55753e9753d6SMatthew G. Knepley PetscInt f; 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 55773e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 55783e9753d6SMatthew G. Knepley PetscFE fe; 55793e9753d6SMatthew G. Knepley 55809566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 55813e9753d6SMatthew G. Knepley if (fe) { 55829566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 55839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 55843e9753d6SMatthew G. Knepley } 55853e9753d6SMatthew G. Knepley } 55863e9753d6SMatthew G. Knepley } 55873e9753d6SMatthew G. Knepley cellChunkSize = numCells; 55883e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 5589a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1 * cellChunkSize, &faces)); 5590a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 55919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 55929566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 55939566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat)); 55949566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP)); 55953e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 55963e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 55973e9753d6SMatthew G. Knepley 55989566063dSJacob Faibussowitsch if (hasBdJac) PetscCall(PetscMemzero(elemMat, numCells * totDim * totDim * sizeof(PetscScalar))); 55999566063dSJacob Faibussowitsch if (hasBdPrec) PetscCall(PetscMemzero(elemMatP, numCells * totDim * totDim * sizeof(PetscScalar))); 56003e9753d6SMatthew G. Knepley /* Get faces */ 56013e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 56023e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 56033e9753d6SMatthew G. Knepley const PetscInt *cone; 56049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 5605a4158a15SMatthew G. Knepley faces[0 * cellChunkSize + (c - cS)] = cone[0]; 5606a4158a15SMatthew G. Knepley /*faces[2*cellChunkSize+(c-cS)] = cone[1];*/ 56073e9753d6SMatthew G. Knepley } 5608a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER)); 56093e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 56109566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 56119566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 56123e9753d6SMatthew G. Knepley } else { 56133e9753d6SMatthew G. Knepley PetscInt f; 56143e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56159566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 56163e9753d6SMatthew G. Knepley } 56173e9753d6SMatthew G. Knepley } 56183e9753d6SMatthew G. Knepley 56193e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 56203e9753d6SMatthew G. Knepley PetscFE feI; 56213e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 56223e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 56233e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 56243e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 56255fedec97SMatthew G. Knepley PetscBool isCohesiveField; 56263e9753d6SMatthew G. Knepley 56279566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 56283e9753d6SMatthew G. Knepley if (!feI) continue; 56299566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 56309566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 56319566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 56323e9753d6SMatthew G. Knepley blockSize = Nb; 56333e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 56349566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 56353e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 56363e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 56373e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 56383e9753d6SMatthew G. Knepley offset = numCells - Nr; 56399566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 56409566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom)); 56419566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 56423e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 56433e9753d6SMatthew G. Knepley PetscFE feJ; 56443e9753d6SMatthew G. Knepley 56459566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 56463e9753d6SMatthew G. Knepley if (!feJ) continue; 5647148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 5648148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 56495fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 5650148442b3SMatthew G. Knepley if (hasBdJac) { 56519566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMat)); 56529566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMat[offset * totDim * totDim])); 56539566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMat)); 56549566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMat[offset * totDim * totDim])); 5655148442b3SMatthew G. Knepley } 5656148442b3SMatthew G. Knepley if (hasBdPrec) { 56579566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatP)); 56589566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 56599566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatP)); 56609566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 5661148442b3SMatthew G. Knepley } 56625fedec97SMatthew G. Knepley if (hasBdJac) { 56639566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMat)); 56649566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMat[offset * totDim * totDim])); 5665148442b3SMatthew G. Knepley } 56665fedec97SMatthew G. Knepley if (hasBdPrec) { 56679566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatP)); 56689566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 56693e9753d6SMatthew G. Knepley } 56703e9753d6SMatthew G. Knepley } 56719566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 56729566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 56733e9753d6SMatthew G. Knepley } 56743e9753d6SMatthew G. Knepley /* Insert values into matrix */ 56753e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 56763e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 56773e9753d6SMatthew G. Knepley const PetscInt cind = c - cS; 56783e9753d6SMatthew G. Knepley 56793e9753d6SMatthew G. Knepley if (hasBdPrec) { 56803e9753d6SMatthew G. Knepley if (hasBdJac) { 56819566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 56829566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 56833e9753d6SMatthew G. Knepley } 56849566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 56859566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 56863e9753d6SMatthew G. Knepley } else if (hasBdJac) { 56879566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 56889566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 56893e9753d6SMatthew G. Knepley } 56903e9753d6SMatthew G. Knepley } 56913e9753d6SMatthew G. Knepley } 56929566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 56939566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 56949566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat)); 56959566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP)); 56969566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 56979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 56989566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 56993e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 57009566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 57019566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 57023e9753d6SMatthew G. Knepley } else { 57033e9753d6SMatthew G. Knepley PetscInt f; 57043e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 57059566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 57069566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 57073e9753d6SMatthew G. Knepley } 57089566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 57093e9753d6SMatthew G. Knepley } 57109566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 57119566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 57129566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 57133e9753d6SMatthew G. Knepley PetscFunctionReturn(0); 57143e9753d6SMatthew G. Knepley } 57158e3a2eefSMatthew G. Knepley 57168e3a2eefSMatthew G. Knepley /* 57178e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 57188e3a2eefSMatthew G. Knepley 57198e3a2eefSMatthew G. Knepley Input Parameters: 57208e3a2eefSMatthew G. Knepley + dm - The mesh 57218e3a2eefSMatthew G. Knepley . key - The PetscWeakFormKey indcating where integration should happen 572206ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 57238e3a2eefSMatthew G. Knepley . t - The time 57248e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t 57258e3a2eefSMatthew G. Knepley . X - Local solution vector 57268e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 57278e3a2eefSMatthew G. Knepley . Y - Local input vector 572806ad1575SMatthew G. Knepley - user - the user context 57298e3a2eefSMatthew G. Knepley 57308e3a2eefSMatthew G. Knepley Output Parameter: 57318e3a2eefSMatthew G. Knepley . Z - Local output vector 57328e3a2eefSMatthew G. Knepley 57338e3a2eefSMatthew G. Knepley Note: 57348e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 57358e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 57368e3a2eefSMatthew G. Knepley */ 5737d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 5738d71ae5a4SJacob Faibussowitsch { 57398e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 57408e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 57418e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 57428e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 57438e3a2eefSMatthew G. Knepley Vec A; 57448e3a2eefSMatthew G. Knepley DMField coordField; 57458e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 57468e3a2eefSMatthew G. Knepley PetscQuadrature quad; 57478e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 57488e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 57498e3a2eefSMatthew G. Knepley const PetscInt *cells; 57508e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 57518e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 57528e3a2eefSMatthew G. Knepley PetscBool hasDyn; 57538e3a2eefSMatthew G. Knepley 57548e3a2eefSMatthew G. Knepley PetscFunctionBegin; 57559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 57569566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 57578e3a2eefSMatthew G. Knepley if (!cellIS) { 57588e3a2eefSMatthew G. Knepley PetscInt depth; 57598e3a2eefSMatthew G. Knepley 57609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 57619566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS)); 57629566063dSJacob Faibussowitsch if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS)); 57638e3a2eefSMatthew G. Knepley } else { 57649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cellIS)); 57658e3a2eefSMatthew G. Knepley } 57669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 57679566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 57689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 57699566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 57709566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 57719566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 57729566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 57739566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 57748e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 57759566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 57768e3a2eefSMatthew G. Knepley if (A) { 57779566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 57789566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 57799566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 57809566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 57819566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 57829566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 57838e3a2eefSMatthew G. Knepley } 57849566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 57859566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z)); 57869566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 57879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 57888e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 57898e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57908e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 57918e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 57928e3a2eefSMatthew G. Knepley PetscInt i; 57938e3a2eefSMatthew G. Knepley 57949566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 57958e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 57969566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 57978e3a2eefSMatthew G. Knepley if (X_t) { 57989566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 57998e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 58009566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 58018e3a2eefSMatthew G. Knepley } 58028e3a2eefSMatthew G. Knepley if (dmAux) { 58038e3a2eefSMatthew G. Knepley PetscInt subcell; 58049566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 58059566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 58068e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 58079566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 58088e3a2eefSMatthew G. Knepley } 58099566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 58108e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 58119566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 58128e3a2eefSMatthew G. Knepley } 58139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 58149566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 58158e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 58168e3a2eefSMatthew G. Knepley PetscFE fe; 58178e3a2eefSMatthew G. Knepley PetscInt Nb; 58188e3a2eefSMatthew G. Knepley /* Conforming batches */ 58198e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 58208e3a2eefSMatthew G. Knepley /* Remainder */ 58218e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 58228e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 58238e3a2eefSMatthew G. Knepley PetscInt maxDegree; 58248e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 58258e3a2eefSMatthew G. Knepley 58269566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 58279566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 58289566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 58299566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 58309566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 58319566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 58328e3a2eefSMatthew G. Knepley if (!qGeom) { 58339566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 58349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 58358e3a2eefSMatthew G. Knepley } 58369566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 58379566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58388e3a2eefSMatthew G. Knepley blockSize = Nb; 58398e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 58409566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 58418e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 58428e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 58438e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 58448e3a2eefSMatthew G. Knepley offset = numCells - Nr; 58459566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 58469566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 58478e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 58488e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 58499566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 58509566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim])); 58518e3a2eefSMatthew G. Knepley if (hasDyn) { 58529566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 58539566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 58548e3a2eefSMatthew G. Knepley } 58558e3a2eefSMatthew G. Knepley } 58569566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 58579566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 58589566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58599566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 58608e3a2eefSMatthew G. Knepley } 58618e3a2eefSMatthew G. Knepley if (hasDyn) { 58628e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 58638e3a2eefSMatthew G. Knepley } 58648e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 58658e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 58668e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 58678e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 58688e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 58698e3a2eefSMatthew G. Knepley 5870792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 58718e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 58729566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 58739566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 58749566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 58758e3a2eefSMatthew G. Knepley } 58769566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 58778e3a2eefSMatthew G. Knepley } 58789566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 58798e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 58809566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 58819566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 58828e3a2eefSMatthew G. Knepley } 58831059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 58849566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 58859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 58869566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 58879566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 58889566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 58898e3a2eefSMatthew G. Knepley PetscFunctionReturn(0); 58908e3a2eefSMatthew G. Knepley } 5891