xref: /petsc/src/dm/impls/plex/plexfem.c (revision d5b43468fb8780a8feea140ccd6fa3e6a50411cc)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I      "petscdmplex.h"   I*/
2da97024aSMatthew G. Knepley #include <petscsf.h>
3cb1e1211SMatthew G Knepley 
48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h>
5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h>
6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h>
7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h>
8a0845e3aSMatthew G. Knepley 
95f0b18bfSMatthew G. Knepley PetscBool  Clementcite       = PETSC_FALSE;
105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n"
115f0b18bfSMatthew G. Knepley                                "  title   = {Approximation by finite element functions using local regularization},\n"
125f0b18bfSMatthew G. Knepley                                "  author  = {Philippe Cl{\\'e}ment},\n"
135f0b18bfSMatthew G. Knepley                                "  journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n"
145f0b18bfSMatthew G. Knepley                                "  volume  = {9},\n"
155f0b18bfSMatthew G. Knepley                                "  number  = {R2},\n"
165f0b18bfSMatthew G. Knepley                                "  pages   = {77--84},\n"
175f0b18bfSMatthew G. Knepley                                "  year    = {1975}\n}\n";
185f0b18bfSMatthew G. Knepley 
19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy)
20d71ae5a4SJacob Faibussowitsch {
212f856554SMatthew G. Knepley   PetscBool isPlex;
222f856554SMatthew G. Knepley 
232f856554SMatthew G. Knepley   PetscFunctionBegin;
249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
252f856554SMatthew G. Knepley   if (isPlex) {
262f856554SMatthew G. Knepley     *plex = dm;
279566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
282f856554SMatthew G. Knepley   } else {
299566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
302f856554SMatthew G. Knepley     if (!*plex) {
319566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
329566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
332f856554SMatthew G. Knepley       if (copy) {
342f856554SMatthew G. Knepley         DMSubDomainHookLink link;
359a2a23afSMatthew G. Knepley 
369566063dSJacob Faibussowitsch         PetscCall(DMCopyAuxiliaryVec(dm, *plex));
379a2a23afSMatthew G. Knepley         /* Run the subdomain hook (this will copy the DMSNES/DMTS) */
382f856554SMatthew G. Knepley         for (link = dm->subdomainhook; link; link = link->next) {
399566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx));
402f856554SMatthew G. Knepley         }
412f856554SMatthew G. Knepley       }
422f856554SMatthew G. Knepley     } else {
439566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
442f856554SMatthew G. Knepley     }
452f856554SMatthew G. Knepley   }
462f856554SMatthew G. Knepley   PetscFunctionReturn(0);
472f856554SMatthew G. Knepley }
482f856554SMatthew G. Knepley 
49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx)
50d71ae5a4SJacob Faibussowitsch {
519b6f715bSMatthew G. Knepley   PetscFEGeom *geom = (PetscFEGeom *)ctx;
529b6f715bSMatthew G. Knepley 
539b6f715bSMatthew G. Knepley   PetscFunctionBegin;
549566063dSJacob Faibussowitsch   PetscCall(PetscFEGeomDestroy(&geom));
559b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
569b6f715bSMatthew G. Knepley }
579b6f715bSMatthew G. Knepley 
58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
59d71ae5a4SJacob Faibussowitsch {
609b6f715bSMatthew G. Knepley   char           composeStr[33] = {0};
619b6f715bSMatthew G. Knepley   PetscObjectId  id;
629b6f715bSMatthew G. Knepley   PetscContainer container;
639b6f715bSMatthew G. Knepley 
649b6f715bSMatthew G. Knepley   PetscFunctionBegin;
659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
6663a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id));
679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
689b6f715bSMatthew G. Knepley   if (container) {
699566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
709b6f715bSMatthew G. Knepley   } else {
719566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
729566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
739566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
749566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
759566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
769566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
779b6f715bSMatthew G. Knepley   }
789b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
799b6f715bSMatthew G. Knepley }
809b6f715bSMatthew G. Knepley 
81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
82d71ae5a4SJacob Faibussowitsch {
839b6f715bSMatthew G. Knepley   PetscFunctionBegin;
849b6f715bSMatthew G. Knepley   *geom = NULL;
859b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
869b6f715bSMatthew G. Knepley }
879b6f715bSMatthew G. Knepley 
8846fa42a0SMatthew G. Knepley /*@
8946fa42a0SMatthew G. Knepley   DMPlexGetScale - Get the scale for the specified fundamental unit
9046fa42a0SMatthew G. Knepley 
9146fa42a0SMatthew G. Knepley   Not collective
9246fa42a0SMatthew G. Knepley 
934165533cSJose E. Roman   Input Parameters:
9446fa42a0SMatthew G. Knepley + dm   - the DM
9546fa42a0SMatthew G. Knepley - unit - The SI unit
9646fa42a0SMatthew G. Knepley 
974165533cSJose E. Roman   Output Parameter:
9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit
9946fa42a0SMatthew G. Knepley 
10046fa42a0SMatthew G. Knepley   Level: advanced
10146fa42a0SMatthew G. Knepley 
102db781477SPatrick Sanan .seealso: `DMPlexSetScale()`, `PetscUnit`
10346fa42a0SMatthew G. Knepley @*/
104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale)
105d71ae5a4SJacob Faibussowitsch {
106cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
107cb1e1211SMatthew G Knepley 
108cb1e1211SMatthew G Knepley   PetscFunctionBegin;
109cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
110dadcf809SJacob Faibussowitsch   PetscValidRealPointer(scale, 3);
111cb1e1211SMatthew G Knepley   *scale = mesh->scale[unit];
112cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
113cb1e1211SMatthew G Knepley }
114cb1e1211SMatthew G Knepley 
11546fa42a0SMatthew G. Knepley /*@
11646fa42a0SMatthew G. Knepley   DMPlexSetScale - Set the scale for the specified fundamental unit
11746fa42a0SMatthew G. Knepley 
11846fa42a0SMatthew G. Knepley   Not collective
11946fa42a0SMatthew G. Knepley 
1204165533cSJose E. Roman   Input Parameters:
12146fa42a0SMatthew G. Knepley + dm   - the DM
12246fa42a0SMatthew G. Knepley . unit - The SI unit
12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit
12446fa42a0SMatthew G. Knepley 
12546fa42a0SMatthew G. Knepley   Level: advanced
12646fa42a0SMatthew G. Knepley 
127db781477SPatrick Sanan .seealso: `DMPlexGetScale()`, `PetscUnit`
12846fa42a0SMatthew G. Knepley @*/
129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale)
130d71ae5a4SJacob Faibussowitsch {
131cb1e1211SMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
132cb1e1211SMatthew G Knepley 
133cb1e1211SMatthew G Knepley   PetscFunctionBegin;
134cb1e1211SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
135cb1e1211SMatthew G Knepley   mesh->scale[unit] = scale;
136cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
137cb1e1211SMatthew G Knepley }
138cb1e1211SMatthew G Knepley 
139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx)
140d71ae5a4SJacob Faibussowitsch {
1419371c9d4SSatish Balay   const PetscInt eps[3][3][3] = {
1429371c9d4SSatish Balay     {{0, 0, 0},  {0, 0, 1},  {0, -1, 0}},
1439371c9d4SSatish Balay     {{0, 0, -1}, {0, 0, 0},  {1, 0, 0} },
1449371c9d4SSatish Balay     {{0, 1, 0},  {-1, 0, 0}, {0, 0, 0} }
1459371c9d4SSatish Balay   };
146026175e5SToby Isaac   PetscInt *ctxInt = (PetscInt *)ctx;
147ad917190SMatthew G. Knepley   PetscInt  dim2   = ctxInt[0];
148026175e5SToby Isaac   PetscInt  d      = ctxInt[1];
149026175e5SToby Isaac   PetscInt  i, j, k = dim > 2 ? d - dim : d;
150026175e5SToby Isaac 
151ad917190SMatthew G. Knepley   PetscFunctionBegin;
15263a3b9bcSJacob Faibussowitsch   PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2);
153026175e5SToby Isaac   for (i = 0; i < dim; i++) mode[i] = 0.;
154026175e5SToby Isaac   if (d < dim) {
15512adca46SMatthew G. Knepley     mode[d] = 1.; /* Translation along axis d */
156ad917190SMatthew G. Knepley   } else {
157026175e5SToby Isaac     for (i = 0; i < dim; i++) {
1589371c9d4SSatish Balay       for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ }
159026175e5SToby Isaac     }
160026175e5SToby Isaac   }
161ad917190SMatthew G. Knepley   PetscFunctionReturn(0);
162026175e5SToby Isaac }
163026175e5SToby Isaac 
164cc4e42d9SMartin Diehl /*@
16512adca46SMatthew G. Knepley   DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation
166cb1e1211SMatthew G Knepley 
167d083f849SBarry Smith   Collective on dm
168cb1e1211SMatthew G Knepley 
1694165533cSJose E. Roman   Input Parameters:
17056cf3b9cSMatthew G. Knepley + dm - the DM
17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default
172cb1e1211SMatthew G Knepley 
1734165533cSJose E. Roman   Output Parameter:
174cb1e1211SMatthew G Knepley . sp - the null space
175cb1e1211SMatthew G Knepley 
17612adca46SMatthew G. Knepley   Note: This is necessary to provide a suitable coarse space for algebraic multigrid
177cb1e1211SMatthew G Knepley 
178cb1e1211SMatthew G Knepley   Level: advanced
179cb1e1211SMatthew G Knepley 
180db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()`, `PCGAMG`
181cb1e1211SMatthew G Knepley @*/
182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp)
183d71ae5a4SJacob Faibussowitsch {
18456cf3b9cSMatthew G. Knepley   PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *);
185cb1e1211SMatthew G Knepley   MPI_Comm     comm;
186026175e5SToby Isaac   Vec          mode[6];
187026175e5SToby Isaac   PetscSection section, globalSection;
18856cf3b9cSMatthew G. Knepley   PetscInt     dim, dimEmbed, Nf, n, m, mmin, d, i, j;
189cb1e1211SMatthew G Knepley 
190cb1e1211SMatthew G Knepley   PetscFunctionBegin;
1919566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
1929566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1939566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
1949566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
19563a3b9bcSJacob Faibussowitsch   PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf);
19656cf3b9cSMatthew G. Knepley   if (dim == 1 && Nf < 2) {
1979566063dSJacob Faibussowitsch     PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp));
198cb1e1211SMatthew G Knepley     PetscFunctionReturn(0);
199cb1e1211SMatthew G Knepley   }
2009566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2019566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2029566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
2039566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &func));
204b247467aSMatthew G. Knepley   m = (dim * (dim + 1)) / 2;
2059566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2069566063dSJacob Faibussowitsch   PetscCall(VecSetType(mode[0], dm->vectype));
2079566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2089566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2099566063dSJacob Faibussowitsch   PetscCall(VecGetSize(mode[0], &n));
210b247467aSMatthew G. Knepley   mmin        = PetscMin(m, n);
21156cf3b9cSMatthew G. Knepley   func[field] = DMPlexProjectRigidBody_Private;
2129566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
213026175e5SToby Isaac   for (d = 0; d < m; d++) {
214330485fdSToby Isaac     PetscInt ctx[2];
215026175e5SToby Isaac     void    *voidctx = (void *)(&ctx[0]);
216cb1e1211SMatthew G Knepley 
2179d8fbdeaSMatthew G. Knepley     ctx[0] = dimEmbed;
218330485fdSToby Isaac     ctx[1] = d;
2199566063dSJacob Faibussowitsch     PetscCall(DMProjectFunction(dm, 0.0, func, &voidctx, INSERT_VALUES, mode[d]));
220cb1e1211SMatthew G Knepley   }
2213b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
222b50a2c0aSJacob Faibussowitsch   for (i = 0; i < mmin; ++i) {
223b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
224b50a2c0aSJacob Faibussowitsch 
2259566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
2269566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1));
227b50a2c0aSJacob Faibussowitsch     for (j = i + 1; j < mmin; ++j) {
228b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
2299566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
230b50a2c0aSJacob Faibussowitsch     }
231cb1e1211SMatthew G Knepley   }
2329566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp));
2339566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
2349566063dSJacob Faibussowitsch   PetscCall(PetscFree(func));
235cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
236cb1e1211SMatthew G Knepley }
237cb1e1211SMatthew G Knepley 
238cc4e42d9SMartin Diehl /*@
23912adca46SMatthew G. Knepley   DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation
24012adca46SMatthew G. Knepley 
241d083f849SBarry Smith   Collective on dm
24212adca46SMatthew G. Knepley 
2434165533cSJose E. Roman   Input Parameters:
24412adca46SMatthew G. Knepley + dm    - the DM
24512adca46SMatthew G. Knepley . nb    - The number of bodies
24612adca46SMatthew G. Knepley . label - The DMLabel marking each domain
24712adca46SMatthew G. Knepley . nids  - The number of ids per body
24812adca46SMatthew G. Knepley - ids   - An array of the label ids in sequence for each domain
24912adca46SMatthew G. Knepley 
2504165533cSJose E. Roman   Output Parameter:
25112adca46SMatthew G. Knepley . sp - the null space
25212adca46SMatthew G. Knepley 
25312adca46SMatthew G. Knepley   Note: This is necessary to provide a suitable coarse space for algebraic multigrid
25412adca46SMatthew G. Knepley 
25512adca46SMatthew G. Knepley   Level: advanced
25612adca46SMatthew G. Knepley 
257db781477SPatrick Sanan .seealso: `MatNullSpaceCreate()`
25812adca46SMatthew G. Knepley @*/
259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp)
260d71ae5a4SJacob Faibussowitsch {
26112adca46SMatthew G. Knepley   MPI_Comm     comm;
26212adca46SMatthew G. Knepley   PetscSection section, globalSection;
26312adca46SMatthew G. Knepley   Vec         *mode;
26412adca46SMatthew G. Knepley   PetscScalar *dots;
26512adca46SMatthew G. Knepley   PetscInt     dim, dimEmbed, n, m, b, d, i, j, off;
26612adca46SMatthew G. Knepley 
26712adca46SMatthew G. Knepley   PetscFunctionBegin;
2689566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
2699566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
2709566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dimEmbed));
2719566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
2729566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
2739566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n));
27412adca46SMatthew G. Knepley   m = nb * (dim * (dim + 1)) / 2;
2759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &mode, m, &dots));
2769566063dSJacob Faibussowitsch   PetscCall(VecCreate(comm, &mode[0]));
2779566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE));
2789566063dSJacob Faibussowitsch   PetscCall(VecSetUp(mode[0]));
2799566063dSJacob Faibussowitsch   for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i]));
28012adca46SMatthew G. Knepley   for (b = 0, off = 0; b < nb; ++b) {
28112adca46SMatthew G. Knepley     for (d = 0; d < m / nb; ++d) {
28212adca46SMatthew G. Knepley       PetscInt ctx[2];
28312adca46SMatthew G. Knepley       PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private;
28412adca46SMatthew G. Knepley       void *voidctx                                                                                   = (void *)(&ctx[0]);
28512adca46SMatthew G. Knepley 
28612adca46SMatthew G. Knepley       ctx[0] = dimEmbed;
28712adca46SMatthew G. Knepley       ctx[1] = d;
2889566063dSJacob Faibussowitsch       PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]));
28912adca46SMatthew G. Knepley       off += nids[b];
29012adca46SMatthew G. Knepley     }
29112adca46SMatthew G. Knepley   }
2923b2202bfSJacob Faibussowitsch   /* Orthonormalize system */
293606c1a1cSJacob Faibussowitsch   for (i = 0; i < m; ++i) {
294b77f2eeeSJacob Faibussowitsch     PetscScalar dots[6];
2955a0e29b9SJacob Faibussowitsch 
2969566063dSJacob Faibussowitsch     PetscCall(VecNormalize(mode[i], NULL));
2979566063dSJacob Faibussowitsch     PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1));
2985a0e29b9SJacob Faibussowitsch     for (j = i + 1; j < m; ++j) {
299b77f2eeeSJacob Faibussowitsch       dots[j] *= -1.0;
3009566063dSJacob Faibussowitsch       PetscCall(VecAXPY(mode[j], dots[j], mode[i]));
3015a0e29b9SJacob Faibussowitsch     }
30212adca46SMatthew G. Knepley   }
3039566063dSJacob Faibussowitsch   PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp));
3049566063dSJacob Faibussowitsch   for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i]));
3059566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mode, dots));
30612adca46SMatthew G. Knepley   PetscFunctionReturn(0);
30712adca46SMatthew G. Knepley }
30812adca46SMatthew G. Knepley 
309b29cfa1cSToby Isaac /*@
310b29cfa1cSToby Isaac   DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs
311b29cfa1cSToby Isaac   are computed by associating the basis function with one of the mesh points in its transitively-closed support, and
312b29cfa1cSToby Isaac   evaluating the dual space basis of that point.  A basis function is associated with the point in its
313b29cfa1cSToby Isaac   transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum
314b29cfa1cSToby Isaac   projection height, which is set with this function.  By default, the maximum projection height is zero, which means
315b29cfa1cSToby Isaac   that only mesh cells are used to project basis functions.  A height of one, for example, evaluates a cell-interior
316b29cfa1cSToby Isaac   basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face.
317b29cfa1cSToby Isaac 
318b29cfa1cSToby Isaac   Input Parameters:
319b29cfa1cSToby Isaac + dm - the DMPlex object
320b29cfa1cSToby Isaac - height - the maximum projection height >= 0
321b29cfa1cSToby Isaac 
322b29cfa1cSToby Isaac   Level: advanced
323b29cfa1cSToby Isaac 
324db781477SPatrick Sanan .seealso: `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
325b29cfa1cSToby Isaac @*/
326d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height)
327d71ae5a4SJacob Faibussowitsch {
328b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
329b29cfa1cSToby Isaac 
330b29cfa1cSToby Isaac   PetscFunctionBegin;
331b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
332b29cfa1cSToby Isaac   plex->maxProjectionHeight = height;
333b29cfa1cSToby Isaac   PetscFunctionReturn(0);
334b29cfa1cSToby Isaac }
335b29cfa1cSToby Isaac 
336b29cfa1cSToby Isaac /*@
337b29cfa1cSToby Isaac   DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in
338b29cfa1cSToby Isaac   DMPlexProjectXXXLocal() functions.
339b29cfa1cSToby Isaac 
340b29cfa1cSToby Isaac   Input Parameters:
341b29cfa1cSToby Isaac . dm - the DMPlex object
342b29cfa1cSToby Isaac 
343b29cfa1cSToby Isaac   Output Parameters:
344b29cfa1cSToby Isaac . height - the maximum projection height
345b29cfa1cSToby Isaac 
346b29cfa1cSToby Isaac   Level: intermediate
347b29cfa1cSToby Isaac 
348db781477SPatrick Sanan .seealso: `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`
349b29cfa1cSToby Isaac @*/
350d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height)
351d71ae5a4SJacob Faibussowitsch {
352b29cfa1cSToby Isaac   DM_Plex *plex = (DM_Plex *)dm->data;
353b29cfa1cSToby Isaac 
354b29cfa1cSToby Isaac   PetscFunctionBegin;
355b29cfa1cSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
356b29cfa1cSToby Isaac   *height = plex->maxProjectionHeight;
357b29cfa1cSToby Isaac   PetscFunctionReturn(0);
358b29cfa1cSToby Isaac }
359b29cfa1cSToby Isaac 
360ca3d3a14SMatthew G. Knepley typedef struct {
361ca3d3a14SMatthew G. Knepley   PetscReal    alpha; /* The first Euler angle, and in 2D the only one */
362ca3d3a14SMatthew G. Knepley   PetscReal    beta;  /* The second Euler angle */
363ca3d3a14SMatthew G. Knepley   PetscReal    gamma; /* The third Euler angle */
364ca3d3a14SMatthew G. Knepley   PetscInt     dim;   /* The dimension of R */
365ca3d3a14SMatthew G. Knepley   PetscScalar *R;     /* The rotation matrix, transforming a vector in the local basis to the global basis */
366ca3d3a14SMatthew G. Knepley   PetscScalar *RT;    /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */
367ca3d3a14SMatthew G. Knepley } RotCtx;
368ca3d3a14SMatthew G. Knepley 
369ca3d3a14SMatthew G. Knepley /*
370ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
371ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
372ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
373ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
374ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
375ca3d3a14SMatthew G. Knepley */
376d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx)
377d71ae5a4SJacob Faibussowitsch {
378ca3d3a14SMatthew G. Knepley   RotCtx   *rc  = (RotCtx *)ctx;
379ca3d3a14SMatthew G. Knepley   PetscInt  dim = rc->dim;
380ca3d3a14SMatthew G. Knepley   PetscReal c1, s1, c2, s2, c3, s3;
381ca3d3a14SMatthew G. Knepley 
382ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
3839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT));
384ca3d3a14SMatthew G. Knepley   switch (dim) {
385ca3d3a14SMatthew G. Knepley   case 2:
3869371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
3879371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
3889371c9d4SSatish Balay     rc->R[0] = c1;
3899371c9d4SSatish Balay     rc->R[1] = s1;
3909371c9d4SSatish Balay     rc->R[2] = -s1;
3919371c9d4SSatish Balay     rc->R[3] = c1;
3929566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
393b458e8f1SJose E. Roman     DMPlex_Transpose2D_Internal(rc->RT);
394ca3d3a14SMatthew G. Knepley     break;
395ca3d3a14SMatthew G. Knepley   case 3:
3969371c9d4SSatish Balay     c1       = PetscCosReal(rc->alpha);
3979371c9d4SSatish Balay     s1       = PetscSinReal(rc->alpha);
3989371c9d4SSatish Balay     c2       = PetscCosReal(rc->beta);
3999371c9d4SSatish Balay     s2       = PetscSinReal(rc->beta);
4009371c9d4SSatish Balay     c3       = PetscCosReal(rc->gamma);
4019371c9d4SSatish Balay     s3       = PetscSinReal(rc->gamma);
4029371c9d4SSatish Balay     rc->R[0] = c1 * c3 - c2 * s1 * s3;
4039371c9d4SSatish Balay     rc->R[1] = c3 * s1 + c1 * c2 * s3;
4049371c9d4SSatish Balay     rc->R[2] = s2 * s3;
4059371c9d4SSatish Balay     rc->R[3] = -c1 * s3 - c2 * c3 * s1;
4069371c9d4SSatish Balay     rc->R[4] = c1 * c2 * c3 - s1 * s3;
4079371c9d4SSatish Balay     rc->R[5] = c3 * s2;
4089371c9d4SSatish Balay     rc->R[6] = s1 * s2;
4099371c9d4SSatish Balay     rc->R[7] = -c1 * s2;
4109371c9d4SSatish Balay     rc->R[8] = c2;
4119566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim)));
412b458e8f1SJose E. Roman     DMPlex_Transpose3D_Internal(rc->RT);
413ca3d3a14SMatthew G. Knepley     break;
414d71ae5a4SJacob Faibussowitsch   default:
415d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim);
416ca3d3a14SMatthew G. Knepley   }
417ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
418ca3d3a14SMatthew G. Knepley }
419ca3d3a14SMatthew G. Knepley 
420d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx)
421d71ae5a4SJacob Faibussowitsch {
422ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
423ca3d3a14SMatthew G. Knepley 
424ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
4259566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rc->R, rc->RT));
4269566063dSJacob Faibussowitsch   PetscCall(PetscFree(rc));
427ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
428ca3d3a14SMatthew G. Knepley }
429ca3d3a14SMatthew G. Knepley 
430d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx)
431d71ae5a4SJacob Faibussowitsch {
432ca3d3a14SMatthew G. Knepley   RotCtx *rc = (RotCtx *)ctx;
433ca3d3a14SMatthew G. Knepley 
434ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
435ca3d3a14SMatthew G. Knepley   PetscValidPointer(ctx, 5);
4369371c9d4SSatish Balay   if (l2g) {
4379371c9d4SSatish Balay     *A = rc->R;
4389371c9d4SSatish Balay   } else {
4399371c9d4SSatish Balay     *A = rc->RT;
4409371c9d4SSatish Balay   }
441ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
442ca3d3a14SMatthew G. Knepley }
443ca3d3a14SMatthew G. Knepley 
444d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx)
445d71ae5a4SJacob Faibussowitsch {
446ec277c0fSMatthew G. Knepley   PetscFunctionBegin;
447ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX)
448ab6a9622SMatthew G. Knepley   switch (dim) {
4499371c9d4SSatish Balay   case 2: {
45027104ee2SJacob Faibussowitsch     PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0};
451ab6a9622SMatthew G. Knepley 
4529566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4539371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4549371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4559371c9d4SSatish Balay   } break;
4569371c9d4SSatish Balay   case 3: {
45727104ee2SJacob Faibussowitsch     PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0};
458ab6a9622SMatthew G. Knepley 
4599566063dSJacob Faibussowitsch     PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx));
4609371c9d4SSatish Balay     z[0] = PetscRealPart(zt[0]);
4619371c9d4SSatish Balay     z[1] = PetscRealPart(zt[1]);
4629371c9d4SSatish Balay     z[2] = PetscRealPart(zt[2]);
4639371c9d4SSatish Balay   } break;
464ab6a9622SMatthew G. Knepley   }
465ab6a9622SMatthew G. Knepley #else
4669566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx));
467ab6a9622SMatthew G. Knepley #endif
468ec277c0fSMatthew G. Knepley   PetscFunctionReturn(0);
469ab6a9622SMatthew G. Knepley }
470ab6a9622SMatthew G. Knepley 
471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx)
472d71ae5a4SJacob Faibussowitsch {
473ca3d3a14SMatthew G. Knepley   const PetscScalar *A;
474ca3d3a14SMatthew G. Knepley 
475ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4769566063dSJacob Faibussowitsch   PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx));
477ca3d3a14SMatthew G. Knepley   switch (dim) {
478d71ae5a4SJacob Faibussowitsch   case 2:
479d71ae5a4SJacob Faibussowitsch     DMPlex_Mult2D_Internal(A, 1, y, z);
480d71ae5a4SJacob Faibussowitsch     break;
481d71ae5a4SJacob Faibussowitsch   case 3:
482d71ae5a4SJacob Faibussowitsch     DMPlex_Mult3D_Internal(A, 1, y, z);
483d71ae5a4SJacob Faibussowitsch     break;
484ca3d3a14SMatthew G. Knepley   }
485ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
486ca3d3a14SMatthew G. Knepley }
487ca3d3a14SMatthew G. Knepley 
488d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a)
489d71ae5a4SJacob Faibussowitsch {
490ca3d3a14SMatthew G. Knepley   PetscSection       ts;
491ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tva;
492ca3d3a14SMatthew G. Knepley   PetscInt           dof;
493ca3d3a14SMatthew G. Knepley 
494ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
4959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
4969566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
4979566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
4989566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva));
499ca3d3a14SMatthew G. Knepley   if (l2g) {
500ca3d3a14SMatthew G. Knepley     switch (dof) {
501d71ae5a4SJacob Faibussowitsch     case 4:
502d71ae5a4SJacob Faibussowitsch       DMPlex_Mult2D_Internal(tva, 1, a, a);
503d71ae5a4SJacob Faibussowitsch       break;
504d71ae5a4SJacob Faibussowitsch     case 9:
505d71ae5a4SJacob Faibussowitsch       DMPlex_Mult3D_Internal(tva, 1, a, a);
506d71ae5a4SJacob Faibussowitsch       break;
507ca3d3a14SMatthew G. Knepley     }
508ca3d3a14SMatthew G. Knepley   } else {
509ca3d3a14SMatthew G. Knepley     switch (dof) {
510d71ae5a4SJacob Faibussowitsch     case 4:
511d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose2D_Internal(tva, 1, a, a);
512d71ae5a4SJacob Faibussowitsch       break;
513d71ae5a4SJacob Faibussowitsch     case 9:
514d71ae5a4SJacob Faibussowitsch       DMPlex_MultTranspose3D_Internal(tva, 1, a, a);
515d71ae5a4SJacob Faibussowitsch       break;
516ca3d3a14SMatthew G. Knepley     }
517ca3d3a14SMatthew G. Knepley   }
5189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
519ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
520ca3d3a14SMatthew G. Knepley }
521ca3d3a14SMatthew G. Knepley 
522d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a)
523d71ae5a4SJacob Faibussowitsch {
524ca3d3a14SMatthew G. Knepley   PetscSection       s, ts;
525ca3d3a14SMatthew G. Knepley   const PetscScalar *ta, *tvaf, *tvag;
526ca3d3a14SMatthew G. Knepley   PetscInt           fdof, gdof, fpdof, gpdof;
527ca3d3a14SMatthew G. Knepley 
528ca3d3a14SMatthew G. Knepley   PetscFunctionBeginHot;
5299566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5309566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
5319566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof));
5329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof));
5339566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof));
5349566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof));
5359566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
5369566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf));
5379566063dSJacob Faibussowitsch   PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag));
538ca3d3a14SMatthew G. Knepley   if (l2g) {
539ca3d3a14SMatthew G. Knepley     switch (fdof) {
540d71ae5a4SJacob Faibussowitsch     case 4:
541d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);
542d71ae5a4SJacob Faibussowitsch       break;
543d71ae5a4SJacob Faibussowitsch     case 9:
544d71ae5a4SJacob Faibussowitsch       DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);
545d71ae5a4SJacob Faibussowitsch       break;
546ca3d3a14SMatthew G. Knepley     }
547ca3d3a14SMatthew G. Knepley     switch (gdof) {
548d71ae5a4SJacob Faibussowitsch     case 4:
549d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);
550d71ae5a4SJacob Faibussowitsch       break;
551d71ae5a4SJacob Faibussowitsch     case 9:
552d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);
553d71ae5a4SJacob Faibussowitsch       break;
554ca3d3a14SMatthew G. Knepley     }
555ca3d3a14SMatthew G. Knepley   } else {
556ca3d3a14SMatthew G. Knepley     switch (fdof) {
557d71ae5a4SJacob Faibussowitsch     case 4:
558d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);
559d71ae5a4SJacob Faibussowitsch       break;
560d71ae5a4SJacob Faibussowitsch     case 9:
561d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);
562d71ae5a4SJacob Faibussowitsch       break;
563ca3d3a14SMatthew G. Knepley     }
564ca3d3a14SMatthew G. Knepley     switch (gdof) {
565d71ae5a4SJacob Faibussowitsch     case 4:
566d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);
567d71ae5a4SJacob Faibussowitsch       break;
568d71ae5a4SJacob Faibussowitsch     case 9:
569d71ae5a4SJacob Faibussowitsch       DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);
570d71ae5a4SJacob Faibussowitsch       break;
571ca3d3a14SMatthew G. Knepley     }
572ca3d3a14SMatthew G. Knepley   }
5739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
574ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
575ca3d3a14SMatthew G. Knepley }
576ca3d3a14SMatthew G. Knepley 
577d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a)
578d71ae5a4SJacob Faibussowitsch {
579ca3d3a14SMatthew G. Knepley   PetscSection    s;
580ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
581ca3d3a14SMatthew G. Knepley   IS              clPoints;
582ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
583ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
584ca3d3a14SMatthew G. Knepley   PetscInt        Nf, f, Np, cp, dof, d = 0;
585ca3d3a14SMatthew G. Knepley 
586ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
5879566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
5889566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
5899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
590ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
591ca3d3a14SMatthew G. Knepley     for (cp = 0; cp < Np * 2; cp += 2) {
5929566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof));
593ca3d3a14SMatthew G. Knepley       if (!dof) continue;
5949566063dSJacob Faibussowitsch       if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]));
595ca3d3a14SMatthew G. Knepley       d += dof;
596ca3d3a14SMatthew G. Knepley     }
597ca3d3a14SMatthew G. Knepley   }
5989566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
599ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
600ca3d3a14SMatthew G. Knepley }
601ca3d3a14SMatthew G. Knepley 
602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a)
603d71ae5a4SJacob Faibussowitsch {
604ca3d3a14SMatthew G. Knepley   PetscSection    s;
605ca3d3a14SMatthew G. Knepley   PetscSection    clSection;
606ca3d3a14SMatthew G. Knepley   IS              clPoints;
607ca3d3a14SMatthew G. Knepley   const PetscInt *clp;
608ca3d3a14SMatthew G. Knepley   PetscInt       *points = NULL;
6098bdb3c71SMatthew G. Knepley   PetscInt        Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0;
610ca3d3a14SMatthew G. Knepley 
611ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6129566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6139566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6149566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
615ca3d3a14SMatthew G. Knepley   for (f = 0, r = 0; f < Nf; ++f) {
616ca3d3a14SMatthew G. Knepley     for (cpf = 0; cpf < Np * 2; cpf += 2) {
6179566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof));
618ca3d3a14SMatthew G. Knepley       for (g = 0, c = 0; g < Nf; ++g) {
619ca3d3a14SMatthew G. Knepley         for (cpg = 0; cpg < Np * 2; cpg += 2) {
6209566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof));
6219566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c]));
622ca3d3a14SMatthew G. Knepley           c += gdof;
623ca3d3a14SMatthew G. Knepley         }
624ca3d3a14SMatthew G. Knepley       }
62563a3b9bcSJacob Faibussowitsch       PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
626ca3d3a14SMatthew G. Knepley       r += fdof;
627ca3d3a14SMatthew G. Knepley     }
628ca3d3a14SMatthew G. Knepley   }
62963a3b9bcSJacob Faibussowitsch   PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda);
6309566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp));
631ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
632ca3d3a14SMatthew G. Knepley }
633ca3d3a14SMatthew G. Knepley 
634d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g)
635d71ae5a4SJacob Faibussowitsch {
636ca3d3a14SMatthew G. Knepley   DM                 tdm;
637ca3d3a14SMatthew G. Knepley   Vec                tv;
638ca3d3a14SMatthew G. Knepley   PetscSection       ts, s;
639ca3d3a14SMatthew G. Knepley   const PetscScalar *ta;
640ca3d3a14SMatthew G. Knepley   PetscScalar       *a, *va;
641ca3d3a14SMatthew G. Knepley   PetscInt           pStart, pEnd, p, Nf, f;
642ca3d3a14SMatthew G. Knepley 
643ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
6449566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
6459566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
6469566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(tdm, &ts));
6479566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
6489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
6499566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
6509566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lv, &a));
6519566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(tv, &ta));
652ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
653ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
6549566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va));
6559566063dSJacob Faibussowitsch       PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va));
656ca3d3a14SMatthew G. Knepley     }
657ca3d3a14SMatthew G. Knepley   }
6589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lv, &a));
6599566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(tv, &ta));
660ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
661ca3d3a14SMatthew G. Knepley }
662ca3d3a14SMatthew G. Knepley 
663ca3d3a14SMatthew G. Knepley /*@
664ca3d3a14SMatthew G. Knepley   DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis
665ca3d3a14SMatthew G. Knepley 
666ca3d3a14SMatthew G. Knepley   Input Parameters:
667ca3d3a14SMatthew G. Knepley + dm - The DM
668ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis
669ca3d3a14SMatthew G. Knepley 
670ca3d3a14SMatthew G. Knepley   Output Parameters:
671ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis
672ca3d3a14SMatthew G. Knepley 
673c0f8e1fdSMatthew G. Knepley   Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
674c0f8e1fdSMatthew G. Knepley 
675ca3d3a14SMatthew G. Knepley   Level: developer
676ca3d3a14SMatthew G. Knepley 
677db781477SPatrick Sanan .seealso: `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
678ca3d3a14SMatthew G. Knepley @*/
679d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv)
680d71ae5a4SJacob Faibussowitsch {
681ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
682ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
683ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
6849566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE));
685ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
686ca3d3a14SMatthew G. Knepley }
687ca3d3a14SMatthew G. Knepley 
688ca3d3a14SMatthew G. Knepley /*@
689ca3d3a14SMatthew G. Knepley   DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis
690ca3d3a14SMatthew G. Knepley 
691ca3d3a14SMatthew G. Knepley   Input Parameters:
692ca3d3a14SMatthew G. Knepley + dm - The DM
693ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis
694ca3d3a14SMatthew G. Knepley 
695ca3d3a14SMatthew G. Knepley   Output Parameters:
696ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis
697ca3d3a14SMatthew G. Knepley 
698c0f8e1fdSMatthew G. Knepley   Note: This method is only intended to be called inside DMGlobalToLocal(). It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal.
699c0f8e1fdSMatthew G. Knepley 
700ca3d3a14SMatthew G. Knepley   Level: developer
701ca3d3a14SMatthew G. Knepley 
702db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()`
703ca3d3a14SMatthew G. Knepley @*/
704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv)
705d71ae5a4SJacob Faibussowitsch {
706ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
707ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
708ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(lv, VEC_CLASSID, 2);
7099566063dSJacob Faibussowitsch   PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE));
710ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
711ca3d3a14SMatthew G. Knepley }
712ca3d3a14SMatthew G. Knepley 
713ca3d3a14SMatthew G. Knepley /*@
714ca3d3a14SMatthew G. Knepley   DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions
715ca3d3a14SMatthew G. Knepley     and global solutions, to a local basis, appropriate for discretization integrals and assembly.
716ca3d3a14SMatthew G. Knepley 
717ca3d3a14SMatthew G. Knepley   Input Parameters:
718ca3d3a14SMatthew G. Knepley + dm    - The DM
719ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one
720ca3d3a14SMatthew G. Knepley . beta  - The second Euler angle
721f0fc11ceSJed Brown - gamma - The third Euler angle
722ca3d3a14SMatthew G. Knepley 
723ca3d3a14SMatthew G. Knepley   Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that
724ca3d3a14SMatthew G. Knepley   we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows:
725ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis.
726ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis.
727ca3d3a14SMatthew G. Knepley   $ The XYZ system rotates a third time about the z axis by gamma.
728ca3d3a14SMatthew G. Knepley 
729ca3d3a14SMatthew G. Knepley   Level: developer
730ca3d3a14SMatthew G. Knepley 
731db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`
732ca3d3a14SMatthew G. Knepley @*/
733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma)
734d71ae5a4SJacob Faibussowitsch {
735ca3d3a14SMatthew G. Knepley   RotCtx  *rc;
736ca3d3a14SMatthew G. Knepley   PetscInt cdim;
737ca3d3a14SMatthew G. Knepley 
738362febeeSStefano Zampini   PetscFunctionBegin;
7399566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
7409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &rc));
741ca3d3a14SMatthew G. Knepley   dm->transformCtx       = rc;
742ca3d3a14SMatthew G. Knepley   dm->transformSetUp     = DMPlexBasisTransformSetUp_Rotation_Internal;
743ca3d3a14SMatthew G. Knepley   dm->transformDestroy   = DMPlexBasisTransformDestroy_Rotation_Internal;
744ca3d3a14SMatthew G. Knepley   dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal;
745ca3d3a14SMatthew G. Knepley   rc->dim                = cdim;
746ca3d3a14SMatthew G. Knepley   rc->alpha              = alpha;
747ca3d3a14SMatthew G. Knepley   rc->beta               = beta;
748ca3d3a14SMatthew G. Knepley   rc->gamma              = gamma;
7499566063dSJacob Faibussowitsch   PetscCall((*dm->transformSetUp)(dm, dm->transformCtx));
7509566063dSJacob Faibussowitsch   PetscCall(DMConstructBasisTransform_Internal(dm));
751ca3d3a14SMatthew G. Knepley   PetscFunctionReturn(0);
752ca3d3a14SMatthew G. Knepley }
753ca3d3a14SMatthew G. Knepley 
754b278463cSMatthew G. Knepley /*@C
755ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates
756b278463cSMatthew G. Knepley 
757b278463cSMatthew G. Knepley   Input Parameters:
758b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
759b278463cSMatthew G. Knepley . time   - The time
760b278463cSMatthew G. Knepley . field  - The field to constrain
7611c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
7621c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
763b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
764b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
765b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
766b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
767b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
768b278463cSMatthew G. Knepley 
769b278463cSMatthew G. Knepley   Output Parameter:
770b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
771b278463cSMatthew G. Knepley 
772b278463cSMatthew G. Knepley   Level: developer
773b278463cSMatthew G. Knepley 
774db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
775b278463cSMatthew G. Knepley @*/
776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX)
777d71ae5a4SJacob Faibussowitsch {
7780163fd50SMatthew G. Knepley   PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
77955f2e967SMatthew G. Knepley   void   **ctxs;
780d7ddef95SMatthew G. Knepley   PetscInt numFields;
781d7ddef95SMatthew G. Knepley 
782d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
7839566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
7849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
785d7ddef95SMatthew G. Knepley   funcs[field] = func;
786d7ddef95SMatthew G. Knepley   ctxs[field]  = ctx;
7879566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX));
7889566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
789d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
790d7ddef95SMatthew G. Knepley }
791d7ddef95SMatthew G. Knepley 
792b278463cSMatthew G. Knepley /*@C
793ece3a9fcSMatthew G. Knepley   DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data
794b278463cSMatthew G. Knepley 
795b278463cSMatthew G. Knepley   Input Parameters:
796b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
797b278463cSMatthew G. Knepley . time   - The time
798b278463cSMatthew G. Knepley . locU   - A local vector with the input solution values
799b278463cSMatthew G. Knepley . field  - The field to constrain
8001c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
8011c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
802b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
803b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
804b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
805b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
806b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
807b278463cSMatthew G. Knepley 
808b278463cSMatthew G. Knepley   Output Parameter:
809b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
810b278463cSMatthew G. Knepley 
811b278463cSMatthew G. Knepley   Level: developer
812b278463cSMatthew G. Knepley 
813db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()`
814b278463cSMatthew G. Knepley @*/
815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
816d71ae5a4SJacob Faibussowitsch {
8179371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
818c60e475cSMatthew G. Knepley   void   **ctxs;
819c60e475cSMatthew G. Knepley   PetscInt numFields;
820c60e475cSMatthew G. Knepley 
821c60e475cSMatthew G. Knepley   PetscFunctionBegin;
8229566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8239566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
824c60e475cSMatthew G. Knepley   funcs[field] = func;
825c60e475cSMatthew G. Knepley   ctxs[field]  = ctx;
8269566063dSJacob Faibussowitsch   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
828c60e475cSMatthew G. Knepley   PetscFunctionReturn(0);
829c60e475cSMatthew G. Knepley }
830c60e475cSMatthew G. Knepley 
831b278463cSMatthew G. Knepley /*@C
832*d5b43468SJose E. Roman   DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data
833ece3a9fcSMatthew G. Knepley 
834ece3a9fcSMatthew G. Knepley   Collective on dm
835ece3a9fcSMatthew G. Knepley 
836ece3a9fcSMatthew G. Knepley   Input Parameters:
837ece3a9fcSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
838ece3a9fcSMatthew G. Knepley . time   - The time
839ece3a9fcSMatthew G. Knepley . locU   - A local vector with the input solution values
840ece3a9fcSMatthew G. Knepley . field  - The field to constrain
841ece3a9fcSMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
842ece3a9fcSMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
843ece3a9fcSMatthew G. Knepley . label  - The DMLabel defining constrained points
844ece3a9fcSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
845ece3a9fcSMatthew G. Knepley . ids    - An array of ids for constrained points
846ece3a9fcSMatthew G. Knepley . func   - A pointwise function giving boundary values, the calling sequence is given in DMProjectBdFieldLabelLocal()
847ece3a9fcSMatthew G. Knepley - ctx    - An optional user context for bcFunc
848ece3a9fcSMatthew G. Knepley 
849ece3a9fcSMatthew G. Knepley   Output Parameter:
850ece3a9fcSMatthew G. Knepley . locX   - A local vector to receive the boundary values
851ece3a9fcSMatthew G. Knepley 
852ece3a9fcSMatthew G. Knepley   Level: developer
853ece3a9fcSMatthew G. Knepley 
854db781477SPatrick Sanan .seealso: `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
855ece3a9fcSMatthew G. Knepley @*/
856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX)
857d71ae5a4SJacob Faibussowitsch {
8589371c9d4SSatish Balay   void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]);
859ece3a9fcSMatthew G. Knepley   void   **ctxs;
860ece3a9fcSMatthew G. Knepley   PetscInt numFields;
861ece3a9fcSMatthew G. Knepley 
862ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8639566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
8649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs));
865ece3a9fcSMatthew G. Knepley   funcs[field] = func;
866ece3a9fcSMatthew G. Knepley   ctxs[field]  = ctx;
8679566063dSJacob Faibussowitsch   PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX));
8689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(funcs, ctxs));
869ece3a9fcSMatthew G. Knepley   PetscFunctionReturn(0);
870ece3a9fcSMatthew G. Knepley }
871ece3a9fcSMatthew G. Knepley 
872ece3a9fcSMatthew G. Knepley /*@C
873b278463cSMatthew G. Knepley   DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector
874b278463cSMatthew G. Knepley 
875b278463cSMatthew G. Knepley   Input Parameters:
876b278463cSMatthew G. Knepley + dm     - The DM, with a PetscDS that matches the problem being constrained
877b278463cSMatthew G. Knepley . time   - The time
878b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information
879b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information
880b278463cSMatthew G. Knepley . Grad         - A vector with the FVM cell gradient information
881b278463cSMatthew G. Knepley . field  - The field to constrain
8821c531cf8SMatthew G. Knepley . Nc     - The number of constrained field components, or 0 for all components
8831c531cf8SMatthew G. Knepley . comps  - An array of constrained component numbers, or NULL for all components
884b278463cSMatthew G. Knepley . label  - The DMLabel defining constrained points
885b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points
886b278463cSMatthew G. Knepley . ids    - An array of ids for constrained points
887b278463cSMatthew G. Knepley . func   - A pointwise function giving boundary values
888b278463cSMatthew G. Knepley - ctx    - An optional user context for bcFunc
889b278463cSMatthew G. Knepley 
890b278463cSMatthew G. Knepley   Output Parameter:
891b278463cSMatthew G. Knepley . locX   - A local vector to receives the boundary values
892b278463cSMatthew G. Knepley 
893b278463cSMatthew G. Knepley   Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary()
894b278463cSMatthew G. Knepley 
895b278463cSMatthew G. Knepley   Level: developer
896b278463cSMatthew G. Knepley 
897db781477SPatrick Sanan .seealso: `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()`
898b278463cSMatthew G. Knepley @*/
899d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX)
900d71ae5a4SJacob Faibussowitsch {
90161f58d28SMatthew G. Knepley   PetscDS            prob;
902da97024aSMatthew G. Knepley   PetscSF            sf;
903d7ddef95SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad;
90420369375SToby Isaac   const PetscScalar *facegeom, *cellgeom = NULL, *grad;
905da97024aSMatthew G. Knepley   const PetscInt    *leaves;
906d7ddef95SMatthew G. Knepley   PetscScalar       *x, *fx;
907520b3818SMatthew G. Knepley   PetscInt           dim, nleaves, loc, fStart, fEnd, pdim, i;
9085f80ce2aSJacob Faibussowitsch   PetscErrorCode     ierru = 0;
909d7ddef95SMatthew G. Knepley 
910d7ddef95SMatthew G. Knepley   PetscFunctionBegin;
9119566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
9129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
913da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
9149566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9159566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
9169566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
9179566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
9189566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
91920369375SToby Isaac   if (cellGeometry) {
9209566063dSJacob Faibussowitsch     PetscCall(VecGetDM(cellGeometry, &dmCell));
9219566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
92220369375SToby Isaac   }
923d7ddef95SMatthew G. Knepley   if (Grad) {
924c0a6632aSMatthew G. Knepley     PetscFV fv;
925c0a6632aSMatthew G. Knepley 
9269566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv));
9279566063dSJacob Faibussowitsch     PetscCall(VecGetDM(Grad, &dmGrad));
9289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(Grad, &grad));
9299566063dSJacob Faibussowitsch     PetscCall(PetscFVGetNumComponents(fv, &pdim));
9309566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx));
931d7ddef95SMatthew G. Knepley   }
9329566063dSJacob Faibussowitsch   PetscCall(VecGetArray(locX, &x));
933d7ddef95SMatthew G. Knepley   for (i = 0; i < numids; ++i) {
934d7ddef95SMatthew G. Knepley     IS              faceIS;
935d7ddef95SMatthew G. Knepley     const PetscInt *faces;
936d7ddef95SMatthew G. Knepley     PetscInt        numFaces, f;
937d7ddef95SMatthew G. Knepley 
9389566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS));
939d7ddef95SMatthew G. Knepley     if (!faceIS) continue; /* No points with that id on this process */
9409566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
9419566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
942d7ddef95SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
943d7ddef95SMatthew G. Knepley       const PetscInt   face = faces[f], *cells;
944640bce14SSatish Balay       PetscFVFaceGeom *fg;
945d7ddef95SMatthew G. Knepley 
946d7ddef95SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */
9479566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc));
948da97024aSMatthew G. Knepley       if (loc >= 0) continue;
9499566063dSJacob Faibussowitsch       PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
9509566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, face, &cells));
951d7ddef95SMatthew G. Knepley       if (Grad) {
952640bce14SSatish Balay         PetscFVCellGeom *cg;
953640bce14SSatish Balay         PetscScalar     *cx, *cgrad;
954d7ddef95SMatthew G. Knepley         PetscScalar     *xG;
955d7ddef95SMatthew G. Knepley         PetscReal        dx[3];
956d7ddef95SMatthew G. Knepley         PetscInt         d;
957d7ddef95SMatthew G. Knepley 
9589566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg));
9599566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx));
9609566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad));
9619566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
962d7ddef95SMatthew G. Knepley         DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx);
963d7ddef95SMatthew G. Knepley         for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx);
9649566063dSJacob Faibussowitsch         PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx));
965d7ddef95SMatthew G. Knepley       } else {
966640bce14SSatish Balay         PetscScalar *xI;
967d7ddef95SMatthew G. Knepley         PetscScalar *xG;
968d7ddef95SMatthew G. Knepley 
9699566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI));
9709566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG));
971e735a8a9SMatthew G. Knepley         ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);
972e735a8a9SMatthew G. Knepley         if (ierru) {
9739566063dSJacob Faibussowitsch           PetscCall(ISRestoreIndices(faceIS, &faces));
9749566063dSJacob Faibussowitsch           PetscCall(ISDestroy(&faceIS));
975e735a8a9SMatthew G. Knepley           goto cleanup;
976e735a8a9SMatthew G. Knepley         }
977d7ddef95SMatthew G. Knepley       }
978d7ddef95SMatthew G. Knepley     }
9799566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9809566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
981d7ddef95SMatthew G. Knepley   }
982e735a8a9SMatthew G. Knepley cleanup:
9839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(locX, &x));
984d7ddef95SMatthew G. Knepley   if (Grad) {
9859566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx));
9869566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(Grad, &grad));
987d7ddef95SMatthew G. Knepley   }
9889566063dSJacob Faibussowitsch   if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
9899566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
9909566063dSJacob Faibussowitsch   PetscCall(ierru);
991d7ddef95SMatthew G. Knepley   PetscFunctionReturn(0);
992d7ddef95SMatthew G. Knepley }
993d7ddef95SMatthew G. Knepley 
994d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx)
995d71ae5a4SJacob Faibussowitsch {
9960c364540SMatthew G. Knepley   PetscInt c;
9970c364540SMatthew G. Knepley   for (c = 0; c < Nc; ++c) u[c] = 0.0;
9980c364540SMatthew G. Knepley   return 0;
9990c364540SMatthew G. Knepley }
10000c364540SMatthew G. Knepley 
1001d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1002d71ae5a4SJacob Faibussowitsch {
10030c364540SMatthew G. Knepley   PetscObject isZero;
1004e5e52638SMatthew G. Knepley   PetscDS     prob;
1005d7ddef95SMatthew G. Knepley   PetscInt    numBd, b;
100655f2e967SMatthew G. Knepley 
100755f2e967SMatthew G. Knepley   PetscFunctionBegin;
10089566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10099566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10109566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
101155f2e967SMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
101245480ffeSMatthew G. Knepley     PetscWeakForm           wf;
1013f971fd6bSMatthew G. Knepley     DMBoundaryConditionType type;
101445480ffeSMatthew G. Knepley     const char             *name;
1015d7ddef95SMatthew G. Knepley     DMLabel                 label;
10161c531cf8SMatthew G. Knepley     PetscInt                field, Nc;
10171c531cf8SMatthew G. Knepley     const PetscInt         *comps;
1018d7ddef95SMatthew G. Knepley     PetscObject             obj;
1019d7ddef95SMatthew G. Knepley     PetscClassId            id;
102045480ffeSMatthew G. Knepley     void (*bvfunc)(void);
1021d7ddef95SMatthew G. Knepley     PetscInt        numids;
1022d7ddef95SMatthew G. Knepley     const PetscInt *ids;
102355f2e967SMatthew G. Knepley     void           *ctx;
102455f2e967SMatthew G. Knepley 
10259566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
1026f971fd6bSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10279566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10289566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1029d7ddef95SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1030c60e475cSMatthew G. Knepley       switch (type) {
1031c60e475cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
10329371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
103345480ffeSMatthew G. Knepley         PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc;
103445480ffeSMatthew G. Knepley 
103545480ffeSMatthew G. Knepley         if (isZero) func = zero;
10369566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10379566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX));
10389566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10399371c9d4SSatish Balay       } break;
10409371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
104145480ffeSMatthew G. Knepley         PetscPointFunc func = (PetscPointFunc)bvfunc;
104245480ffeSMatthew G. Knepley 
10439566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10449566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX));
10459566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
10469371c9d4SSatish Balay       } break;
1047d71ae5a4SJacob Faibussowitsch       default:
1048d71ae5a4SJacob Faibussowitsch         break;
1049c60e475cSMatthew G. Knepley       }
1050d7ddef95SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
105145480ffeSMatthew G. Knepley       {
105245480ffeSMatthew G. Knepley         PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc;
105345480ffeSMatthew G. Knepley 
105443ea7facSMatthew G. Knepley         if (!faceGeomFVM) continue;
10559566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX));
105645480ffeSMatthew G. Knepley       }
105763a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
105855f2e967SMatthew G. Knepley   }
105955f2e967SMatthew G. Knepley   PetscFunctionReturn(0);
106055f2e967SMatthew G. Knepley }
106155f2e967SMatthew G. Knepley 
1062d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1063d71ae5a4SJacob Faibussowitsch {
106456cf3b9cSMatthew G. Knepley   PetscObject isZero;
106556cf3b9cSMatthew G. Knepley   PetscDS     prob;
106656cf3b9cSMatthew G. Knepley   PetscInt    numBd, b;
106756cf3b9cSMatthew G. Knepley 
106856cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
106956cf3b9cSMatthew G. Knepley   if (!locX) PetscFunctionReturn(0);
10709566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
10719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
10729566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero));
107356cf3b9cSMatthew G. Knepley   for (b = 0; b < numBd; ++b) {
107445480ffeSMatthew G. Knepley     PetscWeakForm           wf;
107556cf3b9cSMatthew G. Knepley     DMBoundaryConditionType type;
107645480ffeSMatthew G. Knepley     const char             *name;
107756cf3b9cSMatthew G. Knepley     DMLabel                 label;
107856cf3b9cSMatthew G. Knepley     PetscInt                field, Nc;
107956cf3b9cSMatthew G. Knepley     const PetscInt         *comps;
108056cf3b9cSMatthew G. Knepley     PetscObject             obj;
108156cf3b9cSMatthew G. Knepley     PetscClassId            id;
108256cf3b9cSMatthew G. Knepley     PetscInt                numids;
108356cf3b9cSMatthew G. Knepley     const PetscInt         *ids;
108445480ffeSMatthew G. Knepley     void (*bvfunc)(void);
108556cf3b9cSMatthew G. Knepley     void *ctx;
108656cf3b9cSMatthew G. Knepley 
10879566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx));
108856cf3b9cSMatthew G. Knepley     if (insertEssential != (type & DM_BC_ESSENTIAL)) continue;
10899566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
10909566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
109156cf3b9cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
109256cf3b9cSMatthew G. Knepley       switch (type) {
109356cf3b9cSMatthew G. Knepley         /* for FEM, there is no insertion to be done for non-essential boundary conditions */
10949371c9d4SSatish Balay       case DM_BC_ESSENTIAL: {
109545480ffeSMatthew G. Knepley         PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc;
109645480ffeSMatthew G. Knepley 
109745480ffeSMatthew G. Knepley         if (isZero) func_t = zero;
10989566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
10999566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11009566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11019371c9d4SSatish Balay       } break;
11029371c9d4SSatish Balay       case DM_BC_ESSENTIAL_FIELD: {
110345480ffeSMatthew G. Knepley         PetscPointFunc func_t = (PetscPointFunc)bvfunc;
110445480ffeSMatthew G. Knepley 
11059566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelAddCells(dm, label));
11069566063dSJacob Faibussowitsch         PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX));
11079566063dSJacob Faibussowitsch         PetscCall(DMPlexLabelClearCells(dm, label));
11089371c9d4SSatish Balay       } break;
1109d71ae5a4SJacob Faibussowitsch       default:
1110d71ae5a4SJacob Faibussowitsch         break;
111156cf3b9cSMatthew G. Knepley       }
111263a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
111356cf3b9cSMatthew G. Knepley   }
111456cf3b9cSMatthew G. Knepley   PetscFunctionReturn(0);
111556cf3b9cSMatthew G. Knepley }
111656cf3b9cSMatthew G. Knepley 
1117f1d73a7aSMatthew G. Knepley /*@
1118f1d73a7aSMatthew G. Knepley   DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector
1119f1d73a7aSMatthew G. Knepley 
1120ed808b8fSJed Brown   Not Collective
1121ed808b8fSJed Brown 
1122f1d73a7aSMatthew G. Knepley   Input Parameters:
1123f1d73a7aSMatthew G. Knepley + dm - The DM
1124f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
1125f1d73a7aSMatthew G. Knepley . time - The time
1126f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
1127f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
1128f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
1129f1d73a7aSMatthew G. Knepley 
1130f1d73a7aSMatthew G. Knepley   Output Parameters:
1131f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values
1132f1d73a7aSMatthew G. Knepley 
1133ed808b8fSJed Brown   Level: intermediate
1134f1d73a7aSMatthew G. Knepley 
1135db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()`, `DMAddBoundary()`
1136f1d73a7aSMatthew G. Knepley @*/
1137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1138d71ae5a4SJacob Faibussowitsch {
1139f1d73a7aSMatthew G. Knepley   PetscFunctionBegin;
1140f1d73a7aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1141064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
1142ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1143ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1144ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1145cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM));
1146f1d73a7aSMatthew G. Knepley   PetscFunctionReturn(0);
1147f1d73a7aSMatthew G. Knepley }
1148f1d73a7aSMatthew G. Knepley 
114956cf3b9cSMatthew G. Knepley /*@
1150a5b23f4aSJose E. Roman   DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector
115156cf3b9cSMatthew G. Knepley 
115256cf3b9cSMatthew G. Knepley   Input Parameters:
115356cf3b9cSMatthew G. Knepley + dm - The DM
115456cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions
115556cf3b9cSMatthew G. Knepley . time - The time
115656cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations
115756cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations
115856cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations
115956cf3b9cSMatthew G. Knepley 
116056cf3b9cSMatthew G. Knepley   Output Parameters:
116156cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values
116256cf3b9cSMatthew G. Knepley 
116356cf3b9cSMatthew G. Knepley   Level: developer
116456cf3b9cSMatthew G. Knepley 
1165db781477SPatrick Sanan .seealso: `DMProjectFunctionLabelLocal()`
116656cf3b9cSMatthew G. Knepley @*/
1167d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM)
1168d71ae5a4SJacob Faibussowitsch {
116956cf3b9cSMatthew G. Knepley   PetscFunctionBegin;
117056cf3b9cSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1171ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3);
1172ad540459SPierre Jolivet   if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5);
1173ad540459SPierre Jolivet   if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6);
1174ad540459SPierre Jolivet   if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7);
1175cac4c232SBarry Smith   PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM));
117656cf3b9cSMatthew G. Knepley   PetscFunctionReturn(0);
117756cf3b9cSMatthew G. Knepley }
117856cf3b9cSMatthew G. Knepley 
1179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1180d71ae5a4SJacob Faibussowitsch {
1181574a98acSMatthew G. Knepley   Vec localX;
1182574a98acSMatthew G. Knepley 
1183574a98acSMatthew G. Knepley   PetscFunctionBegin;
11849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
11859566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL));
11869566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
11879566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
11889566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff));
11899566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
1190574a98acSMatthew G. Knepley   PetscFunctionReturn(0);
1191574a98acSMatthew G. Knepley }
1192574a98acSMatthew G. Knepley 
1193574a98acSMatthew G. Knepley /*@C
1194ca3d3a14SMatthew G. Knepley   DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
1195574a98acSMatthew G. Knepley 
1196d083f849SBarry Smith   Collective on dm
1197c0f8e1fdSMatthew G. Knepley 
1198574a98acSMatthew G. Knepley   Input Parameters:
1199574a98acSMatthew G. Knepley + dm     - The DM
1200574a98acSMatthew G. Knepley . time   - The time
1201574a98acSMatthew G. Knepley . funcs  - The functions to evaluate for each field component
1202574a98acSMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each function, or NULL.
1203574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector
1204574a98acSMatthew G. Knepley 
1205574a98acSMatthew G. Knepley   Output Parameter:
1206574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2
1207574a98acSMatthew G. Knepley 
1208574a98acSMatthew G. Knepley   Level: developer
1209574a98acSMatthew G. Knepley 
1210db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1211574a98acSMatthew G. Knepley @*/
1212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff)
1213d71ae5a4SJacob Faibussowitsch {
12140f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1215ca3d3a14SMatthew G. Knepley   DM               tdm;
1216ca3d3a14SMatthew G. Knepley   Vec              tv;
1217cb1e1211SMatthew G Knepley   PetscSection     section;
1218c5bbbd5bSMatthew G. Knepley   PetscQuadrature  quad;
12194bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
122015496722SMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
12214bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
1222cb1e1211SMatthew G Knepley   PetscReal        localDiff = 0.0;
12237318780aSToby Isaac   const PetscReal *quadWeights;
1224412e9a14SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset;
1225ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1226cb1e1211SMatthew G Knepley 
1227cb1e1211SMatthew G Knepley   PetscFunctionBegin;
12289566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
12299566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
12302a4e142eSMatthew G. Knepley   fegeom.dimEmbed = coordDim;
12319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
12329566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
12339566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
12349566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
12359566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1236cb1e1211SMatthew G Knepley   for (field = 0; field < numFields; ++field) {
123715496722SMatthew G. Knepley     PetscObject  obj;
123815496722SMatthew G. Knepley     PetscClassId id;
1239c5bbbd5bSMatthew G. Knepley     PetscInt     Nc;
1240c5bbbd5bSMatthew G. Knepley 
12419566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
12429566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
124315496722SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
124415496722SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
124515496722SMatthew G. Knepley 
12469566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
12479566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
124815496722SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
124915496722SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
125015496722SMatthew G. Knepley 
12519566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
12529566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
125363a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1254c5bbbd5bSMatthew G. Knepley     numComponents += Nc;
1255cb1e1211SMatthew G Knepley   }
12569566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
125763a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
12589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
12599566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
12609566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
1261cb1e1211SMatthew G Knepley   for (c = cStart; c < cEnd; ++c) {
1262a1e44745SMatthew G. Knepley     PetscScalar *x        = NULL;
1263cb1e1211SMatthew G Knepley     PetscReal    elemDiff = 0.0;
12649c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1265cb1e1211SMatthew G Knepley 
12669566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
12679566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1268cb1e1211SMatthew G Knepley 
126915496722SMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
127015496722SMatthew G. Knepley       PetscObject  obj;
127115496722SMatthew G. Knepley       PetscClassId id;
1272c110b1eeSGeoffrey Irving       void *const  ctx = ctxs ? ctxs[field] : NULL;
127315496722SMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1274cb1e1211SMatthew G Knepley 
12759566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
12769566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
12779371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
12789371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
12799371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
12809371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
12819371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
12829371c9d4SSatish Balay         Nb = 1;
12839371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1284cb1e1211SMatthew G Knepley       if (debug) {
1285cb1e1211SMatthew G Knepley         char title[1024];
128663a3b9bcSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
12879566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1288cb1e1211SMatthew G Knepley       }
12897318780aSToby Isaac       for (q = 0; q < Nq; ++q) {
12902a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1291d0609cedSBarry Smith         PetscErrorCode ierr;
12922a4e142eSMatthew G. Knepley 
12932a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
12942a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
12952a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
12962a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
129763a3b9bcSJacob Faibussowitsch         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1298d3a7d86cSMatthew G. Knepley         if (transform) {
1299d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
13009566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1301d3a7d86cSMatthew G. Knepley         } else {
1302d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1303d3a7d86cSMatthew G. Knepley         }
13049566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
1305ca3d3a14SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx);
1306e735a8a9SMatthew G. Knepley         if (ierr) {
13079566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13089566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
13099566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1310e735a8a9SMatthew G. Knepley         }
13119566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
13129566063dSJacob Faibussowitsch         if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
13139566063dSJacob Faibussowitsch         else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
13142df84da0SMatthew G. Knepley         else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
131515496722SMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1316beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
13179371c9d4SSatish Balay           if (debug)
13189371c9d4SSatish Balay             PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.),
13199371c9d4SSatish Balay                                   (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc])));
13204bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1321cb1e1211SMatthew G Knepley         }
1322cb1e1211SMatthew G Knepley       }
13239c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
1324beaa55a6SMatthew G. Knepley       qc += Nc;
1325cb1e1211SMatthew G Knepley     }
13269566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
13279566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
1328cb1e1211SMatthew G Knepley     localDiff += elemDiff;
1329cb1e1211SMatthew G Knepley   }
13309566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
13311c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
1332cb1e1211SMatthew G Knepley   *diff = PetscSqrtReal(*diff);
1333cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1334cb1e1211SMatthew G Knepley }
1335cb1e1211SMatthew G Knepley 
1336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
1337d71ae5a4SJacob Faibussowitsch {
13380f09c10fSMatthew G. Knepley   const PetscInt   debug = ((DM_Plex *)dm->data)->printL2;
1339ca3d3a14SMatthew G. Knepley   DM               tdm;
1340cb1e1211SMatthew G Knepley   PetscSection     section;
134140e14135SMatthew G. Knepley   PetscQuadrature  quad;
1342ca3d3a14SMatthew G. Knepley   Vec              localX, tv;
13439c3cf19fSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
13442a4e142eSMatthew G. Knepley   const PetscReal *quadWeights;
13454bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
13464bee2e38SMatthew G. Knepley   PetscReal       *coords, *gcoords;
134740e14135SMatthew G. Knepley   PetscReal        localDiff = 0.0;
1348485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset;
1349ca3d3a14SMatthew G. Knepley   PetscBool        transform;
1350cb1e1211SMatthew G Knepley 
1351cb1e1211SMatthew G Knepley   PetscFunctionBegin;
13529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
13539566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
13544bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
13559566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
13569566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
13579566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
13589566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
13599566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
13609566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
13619566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
13629566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
1363652b88e8SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
13640f2d7e86SMatthew G. Knepley     PetscFE  fe;
136540e14135SMatthew G. Knepley     PetscInt Nc;
1366652b88e8SMatthew G. Knepley 
13679566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
13689566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
13699566063dSJacob Faibussowitsch     PetscCall(PetscFEGetNumComponents(fe, &Nc));
137040e14135SMatthew G. Knepley     numComponents += Nc;
1371652b88e8SMatthew G. Knepley   }
13729566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights));
137363a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
13749566063dSJacob Faibussowitsch   /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */
13759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * Nq, &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ));
13769566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
137740e14135SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
137840e14135SMatthew G. Knepley     PetscScalar *x        = NULL;
137940e14135SMatthew G. Knepley     PetscReal    elemDiff = 0.0;
13809c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1381652b88e8SMatthew G. Knepley 
13829566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
13839566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
138440e14135SMatthew G. Knepley 
13859c3cf19fSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
13860f2d7e86SMatthew G. Knepley       PetscFE     fe;
138751259fa3SMatthew G. Knepley       void *const ctx = ctxs ? ctxs[field] : NULL;
13889c3cf19fSMatthew G. Knepley       PetscInt    Nb, Nc, q, fc;
138940e14135SMatthew G. Knepley 
13909566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe));
13919566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
13929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
139340e14135SMatthew G. Knepley       if (debug) {
139440e14135SMatthew G. Knepley         char title[1024];
13959566063dSJacob Faibussowitsch         PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field));
13969566063dSJacob Faibussowitsch         PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset]));
1397652b88e8SMatthew G. Knepley       }
13989c3cf19fSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
13992a4e142eSMatthew G. Knepley         PetscFEGeom    qgeom;
1400d0609cedSBarry Smith         PetscErrorCode ierr;
14012a4e142eSMatthew G. Knepley 
14022a4e142eSMatthew G. Knepley         qgeom.dimEmbed = fegeom.dimEmbed;
14032a4e142eSMatthew G. Knepley         qgeom.J        = &fegeom.J[q * coordDim * coordDim];
14042a4e142eSMatthew G. Knepley         qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
14052a4e142eSMatthew G. Knepley         qgeom.detJ     = &fegeom.detJ[q];
14062df84da0SMatthew G. Knepley         PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
1407d3a7d86cSMatthew G. Knepley         if (transform) {
1408d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * Nq];
14099566063dSJacob Faibussowitsch           PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx));
1410d3a7d86cSMatthew G. Knepley         } else {
1411d3a7d86cSMatthew G. Knepley           gcoords = &coords[coordDim * q];
1412d3a7d86cSMatthew G. Knepley         }
14139566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(funcVal, Nc));
14144bee2e38SMatthew G. Knepley         ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx);
1415e735a8a9SMatthew G. Knepley         if (ierr) {
14169566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
14179566063dSJacob Faibussowitsch           PetscCall(DMRestoreLocalVector(dm, &localX));
14189566063dSJacob Faibussowitsch           PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
1419e735a8a9SMatthew G. Knepley         }
14209566063dSJacob Faibussowitsch         if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
14219566063dSJacob Faibussowitsch         PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant));
14224bee2e38SMatthew G. Knepley         /* Overwrite with the dot product if the normal is given */
14234bee2e38SMatthew G. Knepley         if (n) {
14244bee2e38SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
14254bee2e38SMatthew G. Knepley             PetscScalar sum = 0.0;
14264bee2e38SMatthew G. Knepley             PetscInt    d;
14274bee2e38SMatthew G. Knepley             for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d];
14284bee2e38SMatthew G. Knepley             interpolant[fc] = sum;
14294bee2e38SMatthew G. Knepley           }
14304bee2e38SMatthew G. Knepley         }
14319c3cf19fSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
1432beaa55a6SMatthew G. Knepley           const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
143363a3b9bcSJacob Faibussowitsch           if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "    elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
14344bee2e38SMatthew G. Knepley           elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
143540e14135SMatthew G. Knepley         }
143640e14135SMatthew G. Knepley       }
14379c3cf19fSMatthew G. Knepley       fieldOffset += Nb;
14389c3cf19fSMatthew G. Knepley       qc += Nc;
143940e14135SMatthew G. Knepley     }
14409566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
144163a3b9bcSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff));
144240e14135SMatthew G. Knepley     localDiff += elemDiff;
144340e14135SMatthew G. Knepley   }
14449566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ));
14459566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
14461c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
144740e14135SMatthew G. Knepley   *diff = PetscSqrtReal(*diff);
1448cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
1449cb1e1211SMatthew G Knepley }
1450cb1e1211SMatthew G Knepley 
1451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
1452d71ae5a4SJacob Faibussowitsch {
14530f09c10fSMatthew G. Knepley   const PetscInt debug = ((DM_Plex *)dm->data)->printL2;
1454ca3d3a14SMatthew G. Knepley   DM             tdm;
1455083401c6SMatthew G. Knepley   DMLabel        depthLabel;
145673d901b8SMatthew G. Knepley   PetscSection   section;
1457ca3d3a14SMatthew G. Knepley   Vec            localX, tv;
145873d901b8SMatthew G. Knepley   PetscReal     *localDiff;
1459083401c6SMatthew G. Knepley   PetscInt       dim, depth, dE, Nf, f, Nds, s;
1460ca3d3a14SMatthew G. Knepley   PetscBool      transform;
146173d901b8SMatthew G. Knepley 
146273d901b8SMatthew G. Knepley   PetscFunctionBegin;
14639566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
14649566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
14659566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
14669566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
14679566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
14689566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
14699566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
14709566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
14719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
14729566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(depthLabel, &depth));
1473083401c6SMatthew G. Knepley 
14749566063dSJacob Faibussowitsch   PetscCall(VecSet(localX, 0.0));
14759566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
14769566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
14779566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
14789566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
14799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nf, &localDiff));
1480083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
1481083401c6SMatthew G. Knepley     PetscDS          ds;
1482083401c6SMatthew G. Knepley     DMLabel          label;
1483083401c6SMatthew G. Knepley     IS               fieldIS, pointIS;
1484083401c6SMatthew G. Knepley     const PetscInt  *fields, *points = NULL;
1485083401c6SMatthew G. Knepley     PetscQuadrature  quad;
1486083401c6SMatthew G. Knepley     const PetscReal *quadPoints, *quadWeights;
1487083401c6SMatthew G. Knepley     PetscFEGeom      fegeom;
1488083401c6SMatthew G. Knepley     PetscReal       *coords, *gcoords;
1489083401c6SMatthew G. Knepley     PetscScalar     *funcVal, *interpolant;
14905fedec97SMatthew G. Knepley     PetscBool        isCohesive;
1491083401c6SMatthew G. Knepley     PetscInt         qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf;
149273d901b8SMatthew G. Knepley 
14939566063dSJacob Faibussowitsch     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds));
14949566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
14959566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
14969566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
14979566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalComponents(ds, &totNc));
14989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetQuadrature(ds, &quad));
14999566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
150063a3b9bcSJacob Faibussowitsch     PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc);
15019566063dSJacob Faibussowitsch     PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ));
1502083401c6SMatthew G. Knepley     if (!label) {
15039566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1504083401c6SMatthew G. Knepley     } else {
15059566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
15069566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &cEnd));
15079566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
1508083401c6SMatthew G. Knepley     }
150973d901b8SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
1510083401c6SMatthew G. Knepley       const PetscInt  cell = points ? points[c] : c;
151173d901b8SMatthew G. Knepley       PetscScalar    *x    = NULL;
15125fedec97SMatthew G. Knepley       const PetscInt *cone;
15135fedec97SMatthew G. Knepley       PetscInt        qc = 0, fOff = 0, dep;
151473d901b8SMatthew G. Knepley 
15159566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(depthLabel, cell, &dep));
1516083401c6SMatthew G. Knepley       if (dep != depth - 1) continue;
15175fedec97SMatthew G. Knepley       if (isCohesive) {
15189566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cell, &cone));
15199566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
152096959cd1SMatthew G. Knepley       } else {
15219566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
152296959cd1SMatthew G. Knepley       }
15239566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x));
15245fedec97SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) {
152515496722SMatthew G. Knepley         PetscObject  obj;
152615496722SMatthew G. Knepley         PetscClassId id;
1527083401c6SMatthew G. Knepley         void *const  ctx = ctxs ? ctxs[fields[f]] : NULL;
152815496722SMatthew G. Knepley         PetscInt     Nb, Nc, q, fc;
152915496722SMatthew G. Knepley         PetscReal    elemDiff = 0.0;
15305fedec97SMatthew G. Knepley         PetscBool    cohesive;
153115496722SMatthew G. Knepley 
15329566063dSJacob Faibussowitsch         PetscCall(PetscDSGetCohesive(ds, f, &cohesive));
15335fedec97SMatthew G. Knepley         if (isCohesive && !cohesive) continue;
15349566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
15359566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
15369371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
15379371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
15389371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
15399371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
15409371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
15419371c9d4SSatish Balay           Nb = 1;
15429371c9d4SSatish Balay         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
154373d901b8SMatthew G. Knepley         if (debug) {
154473d901b8SMatthew G. Knepley           char title[1024];
154563a3b9bcSJacob Faibussowitsch           PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f]));
15469566063dSJacob Faibussowitsch           PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff]));
154773d901b8SMatthew G. Knepley         }
15487318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
15492a4e142eSMatthew G. Knepley           PetscFEGeom    qgeom;
1550d0609cedSBarry Smith           PetscErrorCode ierr;
15512a4e142eSMatthew G. Knepley 
15522a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
1553083401c6SMatthew G. Knepley           qgeom.J        = &fegeom.J[q * dE * dE];
1554083401c6SMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * dE * dE];
15552a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
155663a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
1557d3a7d86cSMatthew G. Knepley           if (transform) {
1558083401c6SMatthew G. Knepley             gcoords = &coords[dE * Nq];
15599566063dSJacob Faibussowitsch             PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx));
1560d3a7d86cSMatthew G. Knepley           } else {
1561083401c6SMatthew G. Knepley             gcoords = &coords[dE * q];
1562d3a7d86cSMatthew G. Knepley           }
15632df84da0SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.;
1564083401c6SMatthew G. Knepley           ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx);
1565e735a8a9SMatthew G. Knepley           if (ierr) {
15669566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
15679566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
15689566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
1569e735a8a9SMatthew G. Knepley           }
15709566063dSJacob Faibussowitsch           if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx));
157196959cd1SMatthew G. Knepley           /* Call once for each face, except for lagrange field */
15729566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant));
15739566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant));
157463a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]);
157515496722SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1576beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
15779371c9d4SSatish Balay             if (debug)
15789371c9d4SSatish Balay               PetscCall(PetscPrintf(PETSC_COMM_SELF, "    cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.),
15799371c9d4SSatish Balay                                     (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q])));
15804bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
158173d901b8SMatthew G. Knepley           }
158273d901b8SMatthew G. Knepley         }
1583083401c6SMatthew G. Knepley         fOff += Nb;
15849c3cf19fSMatthew G. Knepley         qc += Nc;
1585083401c6SMatthew G. Knepley         localDiff[fields[f]] += elemDiff;
158663a3b9bcSJacob Faibussowitsch         if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]]));
158773d901b8SMatthew G. Knepley       }
15889566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x));
1589083401c6SMatthew G. Knepley     }
1590083401c6SMatthew G. Knepley     if (label) {
15919566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
15929566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
1593083401c6SMatthew G. Knepley     }
15949566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
15959566063dSJacob Faibussowitsch     PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
159673d901b8SMatthew G. Knepley   }
15979566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
15981c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
15999566063dSJacob Faibussowitsch   PetscCall(PetscFree(localDiff));
1600083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]);
160173d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
160273d901b8SMatthew G. Knepley }
160373d901b8SMatthew G. Knepley 
1604e729f68cSMatthew G. Knepley /*@C
1605e729f68cSMatthew G. Knepley   DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec.
1606e729f68cSMatthew G. Knepley 
1607d083f849SBarry Smith   Collective on dm
1608c0f8e1fdSMatthew G. Knepley 
1609e729f68cSMatthew G. Knepley   Input Parameters:
1610e729f68cSMatthew G. Knepley + dm    - The DM
16110163fd50SMatthew G. Knepley . time  - The time
1612ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation
1613e729f68cSMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each function, or NULL.
1614e729f68cSMatthew G. Knepley - X     - The coefficient vector u_h
1615e729f68cSMatthew G. Knepley 
1616e729f68cSMatthew G. Knepley   Output Parameter:
1617e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell
1618e729f68cSMatthew G. Knepley 
1619e729f68cSMatthew G. Knepley   Level: developer
1620e729f68cSMatthew G. Knepley 
1621db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
1622e729f68cSMatthew G. Knepley @*/
1623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D)
1624d71ae5a4SJacob Faibussowitsch {
1625e729f68cSMatthew G. Knepley   PetscSection     section;
1626e729f68cSMatthew G. Knepley   PetscQuadrature  quad;
1627e729f68cSMatthew G. Knepley   Vec              localX;
16284bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
1629e729f68cSMatthew G. Knepley   PetscScalar     *funcVal, *interpolant;
16304bee2e38SMatthew G. Knepley   PetscReal       *coords;
1631e729f68cSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1632485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset;
1633e729f68cSMatthew G. Knepley 
1634e729f68cSMatthew G. Knepley   PetscFunctionBegin;
16359566063dSJacob Faibussowitsch   PetscCall(VecSet(D, 0.0));
16369566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
16379566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
16389566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
16399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &numFields));
16409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
16419566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX));
16429566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX));
16439566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX));
1644e729f68cSMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
1645e729f68cSMatthew G. Knepley     PetscObject  obj;
1646e729f68cSMatthew G. Knepley     PetscClassId id;
1647e729f68cSMatthew G. Knepley     PetscInt     Nc;
1648e729f68cSMatthew G. Knepley 
16499566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
16509566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
1651e729f68cSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
1652e729f68cSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
1653e729f68cSMatthew G. Knepley 
16549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
16559566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
1656e729f68cSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
1657e729f68cSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
1658e729f68cSMatthew G. Knepley 
16599566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
16609566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
166163a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1662e729f68cSMatthew G. Knepley     numComponents += Nc;
1663e729f68cSMatthew G. Knepley   }
16649566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
166563a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
16669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
16679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
1668e729f68cSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1669e729f68cSMatthew G. Knepley     PetscScalar *x        = NULL;
16706f288a59SMatthew G. Knepley     PetscScalar  elemDiff = 0.0;
16719c3cf19fSMatthew G. Knepley     PetscInt     qc       = 0;
1672e729f68cSMatthew G. Knepley 
16739566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
16749566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x));
1675e729f68cSMatthew G. Knepley 
1676e729f68cSMatthew G. Knepley     for (field = 0, fieldOffset = 0; field < numFields; ++field) {
1677e729f68cSMatthew G. Knepley       PetscObject  obj;
1678e729f68cSMatthew G. Knepley       PetscClassId id;
1679e729f68cSMatthew G. Knepley       void *const  ctx = ctxs ? ctxs[field] : NULL;
1680e729f68cSMatthew G. Knepley       PetscInt     Nb, Nc, q, fc;
1681e729f68cSMatthew G. Knepley 
16829566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
16839566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
16849371c9d4SSatish Balay       if (id == PETSCFE_CLASSID) {
16859371c9d4SSatish Balay         PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
16869371c9d4SSatish Balay         PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
16879371c9d4SSatish Balay       } else if (id == PETSCFV_CLASSID) {
16889371c9d4SSatish Balay         PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
16899371c9d4SSatish Balay         Nb = 1;
16909371c9d4SSatish Balay       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
169123f34ed2SToby Isaac       if (funcs[field]) {
16927318780aSToby Isaac         for (q = 0; q < Nq; ++q) {
16932a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
16942a4e142eSMatthew G. Knepley 
16952a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
16962a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
16972a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
16982a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
169963a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q);
17009566063dSJacob Faibussowitsch           PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx));
1701c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument)
1702e735a8a9SMatthew G. Knepley           if (ierr) {
17039566063dSJacob Faibussowitsch             PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17049566063dSJacob Faibussowitsch             PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17059566063dSJacob Faibussowitsch             PetscCall(DMRestoreLocalVector(dm, &localX));
1706e735a8a9SMatthew G. Knepley           }
1707c3e24edfSBarry Smith #endif
17089566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant));
17099566063dSJacob Faibussowitsch           else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant));
171063a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
1711e729f68cSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
1712beaa55a6SMatthew G. Knepley             const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)];
17134bee2e38SMatthew G. Knepley             elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q];
1714e729f68cSMatthew G. Knepley           }
1715e729f68cSMatthew G. Knepley         }
171623f34ed2SToby Isaac       }
1717beaa55a6SMatthew G. Knepley       fieldOffset += Nb;
17189c3cf19fSMatthew G. Knepley       qc += Nc;
1719e729f68cSMatthew G. Knepley     }
17209566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x));
17219566063dSJacob Faibussowitsch     PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES));
1722e729f68cSMatthew G. Knepley   }
17239566063dSJacob Faibussowitsch   PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
17249566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
17259566063dSJacob Faibussowitsch   PetscCall(VecSqrtAbs(D));
1726e729f68cSMatthew G. Knepley   PetscFunctionReturn(0);
1727e729f68cSMatthew G. Knepley }
1728e729f68cSMatthew G. Knepley 
17295f0b18bfSMatthew G. Knepley /*@
17305f0b18bfSMatthew G. Knepley   DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1, and stores it in a Vec.
17315f0b18bfSMatthew G. Knepley 
17325f0b18bfSMatthew G. Knepley   Collective on dm
17335f0b18bfSMatthew G. Knepley 
17345f0b18bfSMatthew G. Knepley   Input Parameters:
17355f0b18bfSMatthew G. Knepley + dm - The DM
17365f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
17375f0b18bfSMatthew G. Knepley 
17385f0b18bfSMatthew G. Knepley   Output Parameter:
17395f0b18bfSMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the function
17405f0b18bfSMatthew G. Knepley 
17415f0b18bfSMatthew G. Knepley   Notes:
17425f0b18bfSMatthew G. Knepley   u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume
17435f0b18bfSMatthew G. Knepley 
17445f0b18bfSMatthew G. Knepley   Level: developer
17455f0b18bfSMatthew G. Knepley 
1746db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
17475f0b18bfSMatthew G. Knepley @*/
1748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC)
1749d71ae5a4SJacob Faibussowitsch {
17505f0b18bfSMatthew G. Knepley   PetscInt         debug = ((DM_Plex *)dm->data)->printFEM;
17515f0b18bfSMatthew G. Knepley   DM               dmc;
17525f0b18bfSMatthew G. Knepley   PetscQuadrature  quad;
17535f0b18bfSMatthew G. Knepley   PetscScalar     *interpolant, *valsum;
17545f0b18bfSMatthew G. Knepley   PetscFEGeom      fegeom;
17555f0b18bfSMatthew G. Knepley   PetscReal       *coords;
17565f0b18bfSMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
17575f0b18bfSMatthew G. Knepley   PetscInt         dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v;
17585f0b18bfSMatthew G. Knepley 
17595f0b18bfSMatthew G. Knepley   PetscFunctionBegin;
17609566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
17619566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmc));
17629566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
17639566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
17649566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
17655f0b18bfSMatthew G. Knepley   fegeom.dimEmbed = cdim;
17669566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
17675f0b18bfSMatthew G. Knepley   PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
17685f0b18bfSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
17695f0b18bfSMatthew G. Knepley     PetscObject  obj;
17705f0b18bfSMatthew G. Knepley     PetscClassId id;
17715f0b18bfSMatthew G. Knepley     PetscInt     fNc;
17725f0b18bfSMatthew G. Knepley 
17739566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, NULL, &obj));
17749566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
17755f0b18bfSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
17765f0b18bfSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
17775f0b18bfSMatthew G. Knepley 
17789566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
17799566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &fNc));
17805f0b18bfSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
17815f0b18bfSMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
17825f0b18bfSMatthew G. Knepley 
17839566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
17849566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &fNc));
178563a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
17865f0b18bfSMatthew G. Knepley     Nc += fNc;
17875f0b18bfSMatthew G. Knepley   }
17889566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
178963a3b9bcSJacob Faibussowitsch   PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc);
17909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ));
17919566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
17929566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
17935f0b18bfSMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
17945f0b18bfSMatthew G. Knepley     PetscScalar volsum = 0.0;
17955f0b18bfSMatthew G. Knepley     PetscInt   *star   = NULL;
17965f0b18bfSMatthew G. Knepley     PetscInt    starSize, st, fc;
17975f0b18bfSMatthew G. Knepley 
17989566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(valsum, Nc));
17999566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18005f0b18bfSMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
18015f0b18bfSMatthew G. Knepley       const PetscInt cell = star[st];
18025f0b18bfSMatthew G. Knepley       PetscScalar   *val  = &valsum[Nc];
18035f0b18bfSMatthew G. Knepley       PetscScalar   *x    = NULL;
18045f0b18bfSMatthew G. Knepley       PetscReal      vol  = 0.0;
18055f0b18bfSMatthew G. Knepley       PetscInt       foff = 0;
18065f0b18bfSMatthew G. Knepley 
18075f0b18bfSMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
18089566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
18099566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
18105f0b18bfSMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
18115f0b18bfSMatthew G. Knepley         PetscObject  obj;
18125f0b18bfSMatthew G. Knepley         PetscClassId id;
18135f0b18bfSMatthew G. Knepley         PetscInt     Nb, fNc, q;
18145f0b18bfSMatthew G. Knepley 
18159566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(val, Nc));
18169566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, &obj));
18179566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
18189371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
18199371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc));
18209371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
18219371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
18229371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc));
18239371c9d4SSatish Balay           Nb = 1;
18249371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18255f0b18bfSMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
18265f0b18bfSMatthew G. Knepley           const PetscReal wt = quadWeights[q] * fegeom.detJ[q];
18275f0b18bfSMatthew G. Knepley           PetscFEGeom     qgeom;
18285f0b18bfSMatthew G. Knepley 
18295f0b18bfSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
18305f0b18bfSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * cdim * cdim];
18315f0b18bfSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * cdim * cdim];
18325f0b18bfSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
183363a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
18349566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant));
183563a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
18365f0b18bfSMatthew G. Knepley           for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt;
18375f0b18bfSMatthew G. Knepley           vol += wt;
18385f0b18bfSMatthew G. Knepley         }
18395f0b18bfSMatthew G. Knepley         foff += Nb;
18405f0b18bfSMatthew G. Knepley       }
18419566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
18425f0b18bfSMatthew G. Knepley       for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc];
18435f0b18bfSMatthew G. Knepley       volsum += vol;
18445f0b18bfSMatthew G. Knepley       if (debug) {
18459566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell));
18465f0b18bfSMatthew G. Knepley         for (fc = 0; fc < Nc; ++fc) {
18479566063dSJacob Faibussowitsch           if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
18489566063dSJacob Faibussowitsch           PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc])));
18495f0b18bfSMatthew G. Knepley         }
18509566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
18515f0b18bfSMatthew G. Knepley       }
18525f0b18bfSMatthew G. Knepley     }
18535f0b18bfSMatthew G. Knepley     for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum;
18549566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
18559566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES));
18565f0b18bfSMatthew G. Knepley   }
18579566063dSJacob Faibussowitsch   PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
18585f0b18bfSMatthew G. Knepley   PetscFunctionReturn(0);
18595f0b18bfSMatthew G. Knepley }
18605f0b18bfSMatthew G. Knepley 
18615f0b18bfSMatthew G. Knepley /*@
18621555c271SMatthew G. Knepley   DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec.
18631555c271SMatthew G. Knepley 
1864d083f849SBarry Smith   Collective on dm
1865c0f8e1fdSMatthew G. Knepley 
18661555c271SMatthew G. Knepley   Input Parameters:
18671555c271SMatthew G. Knepley + dm - The DM
18685f0b18bfSMatthew G. Knepley - locX  - The coefficient vector u_h
18691555c271SMatthew G. Knepley 
18701555c271SMatthew G. Knepley   Output Parameter:
18711555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient
18721555c271SMatthew G. Knepley 
187395452b02SPatrick Sanan   Notes:
18741555c271SMatthew G. Knepley   \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume
18751555c271SMatthew G. Knepley 
18761555c271SMatthew G. Knepley   Level: developer
18771555c271SMatthew G. Knepley 
1878db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
18791555c271SMatthew G. Knepley @*/
1880d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC)
1881d71ae5a4SJacob Faibussowitsch {
1882db1066baSMatthew G. Knepley   DM_Plex         *mesh  = (DM_Plex *)dm->data;
1883db1066baSMatthew G. Knepley   PetscInt         debug = mesh->printFEM;
18841555c271SMatthew G. Knepley   DM               dmC;
18851555c271SMatthew G. Knepley   PetscQuadrature  quad;
18861555c271SMatthew G. Knepley   PetscScalar     *interpolant, *gradsum;
18874bee2e38SMatthew G. Knepley   PetscFEGeom      fegeom;
18884bee2e38SMatthew G. Knepley   PetscReal       *coords;
18891555c271SMatthew G. Knepley   const PetscReal *quadPoints, *quadWeights;
1890485ad865SMatthew G. Knepley   PetscInt         dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset;
18911555c271SMatthew G. Knepley 
18921555c271SMatthew G. Knepley   PetscFunctionBegin;
18939566063dSJacob Faibussowitsch   PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite));
18949566063dSJacob Faibussowitsch   PetscCall(VecGetDM(locC, &dmC));
18959566063dSJacob Faibussowitsch   PetscCall(VecSet(locC, 0.0));
18969566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18979566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &coordDim));
18984bee2e38SMatthew G. Knepley   fegeom.dimEmbed = coordDim;
18999566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &numFields));
19005f80ce2aSJacob Faibussowitsch   PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!");
19011555c271SMatthew G. Knepley   for (field = 0; field < numFields; ++field) {
19021555c271SMatthew G. Knepley     PetscObject  obj;
19031555c271SMatthew G. Knepley     PetscClassId id;
19041555c271SMatthew G. Knepley     PetscInt     Nc;
19051555c271SMatthew G. Knepley 
19069566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, field, NULL, &obj));
19079566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
19081555c271SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
19091555c271SMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
19101555c271SMatthew G. Knepley 
19119566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &quad));
19129566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
19131555c271SMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
19141555c271SMatthew G. Knepley       PetscFV fv = (PetscFV)obj;
19151555c271SMatthew G. Knepley 
19169566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature(fv, &quad));
19179566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
191863a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19191555c271SMatthew G. Knepley     numComponents += Nc;
19201555c271SMatthew G. Knepley   }
19219566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights));
192263a3b9bcSJacob Faibussowitsch   PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents);
19239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ));
19249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
19259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
19261555c271SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
19271555c271SMatthew G. Knepley     PetscScalar volsum = 0.0;
19281555c271SMatthew G. Knepley     PetscInt   *star   = NULL;
19291555c271SMatthew G. Knepley     PetscInt    starSize, st, d, fc;
19301555c271SMatthew G. Knepley 
19319566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(gradsum, coordDim * numComponents));
19329566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19331555c271SMatthew G. Knepley     for (st = 0; st < starSize * 2; st += 2) {
19341555c271SMatthew G. Knepley       const PetscInt cell = star[st];
19351555c271SMatthew G. Knepley       PetscScalar   *grad = &gradsum[coordDim * numComponents];
19361555c271SMatthew G. Knepley       PetscScalar   *x    = NULL;
19371555c271SMatthew G. Knepley       PetscReal      vol  = 0.0;
19381555c271SMatthew G. Knepley 
19391555c271SMatthew G. Knepley       if ((cell < cStart) || (cell >= cEnd)) continue;
19409566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ));
19419566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x));
19421555c271SMatthew G. Knepley       for (field = 0, fieldOffset = 0; field < numFields; ++field) {
19431555c271SMatthew G. Knepley         PetscObject  obj;
19441555c271SMatthew G. Knepley         PetscClassId id;
19451555c271SMatthew G. Knepley         PetscInt     Nb, Nc, q, qc = 0;
19461555c271SMatthew G. Knepley 
19479566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(grad, coordDim * numComponents));
19489566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, field, NULL, &obj));
19499566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
19509371c9d4SSatish Balay         if (id == PETSCFE_CLASSID) {
19519371c9d4SSatish Balay           PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc));
19529371c9d4SSatish Balay           PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb));
19539371c9d4SSatish Balay         } else if (id == PETSCFV_CLASSID) {
19549371c9d4SSatish Balay           PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc));
19559371c9d4SSatish Balay           Nb = 1;
19569371c9d4SSatish Balay         } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19571555c271SMatthew G. Knepley         for (q = 0; q < Nq; ++q) {
19582a4e142eSMatthew G. Knepley           PetscFEGeom qgeom;
19592a4e142eSMatthew G. Knepley 
19602a4e142eSMatthew G. Knepley           qgeom.dimEmbed = fegeom.dimEmbed;
19612a4e142eSMatthew G. Knepley           qgeom.J        = &fegeom.J[q * coordDim * coordDim];
19622a4e142eSMatthew G. Knepley           qgeom.invJ     = &fegeom.invJ[q * coordDim * coordDim];
19632a4e142eSMatthew G. Knepley           qgeom.detJ     = &fegeom.detJ[q];
196463a3b9bcSJacob Faibussowitsch           PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q);
19659566063dSJacob Faibussowitsch           if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant));
196663a3b9bcSJacob Faibussowitsch           else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
19671555c271SMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
196853d2db2dSJoe Wallwork             const PetscReal wt = quadWeights[q * qNc + qc];
19691555c271SMatthew G. Knepley 
19704bee2e38SMatthew G. Knepley             for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q];
19711555c271SMatthew G. Knepley           }
19724bee2e38SMatthew G. Knepley           vol += quadWeights[q * qNc] * fegeom.detJ[q];
19731555c271SMatthew G. Knepley         }
19741555c271SMatthew G. Knepley         fieldOffset += Nb;
19751555c271SMatthew G. Knepley         qc += Nc;
19761555c271SMatthew G. Knepley       }
19779566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x));
1978f8527842SMatthew G. Knepley       for (fc = 0; fc < numComponents; ++fc) {
1979ad540459SPierre Jolivet         for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d];
1980f8527842SMatthew G. Knepley       }
1981f8527842SMatthew G. Knepley       volsum += vol;
1982db1066baSMatthew G. Knepley       if (debug) {
19839566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell));
19841555c271SMatthew G. Knepley         for (fc = 0; fc < numComponents; ++fc) {
19851555c271SMatthew G. Knepley           for (d = 0; d < coordDim; ++d) {
19869566063dSJacob Faibussowitsch             if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", "));
19879566063dSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d])));
19881555c271SMatthew G. Knepley           }
19891555c271SMatthew G. Knepley         }
19909566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n"));
1991db1066baSMatthew G. Knepley       }
19921555c271SMatthew G. Knepley     }
19931555c271SMatthew G. Knepley     for (fc = 0; fc < numComponents; ++fc) {
19941555c271SMatthew G. Knepley       for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum;
19951555c271SMatthew G. Knepley     }
19969566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star));
19979566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES));
19981555c271SMatthew G. Knepley   }
19999566063dSJacob Faibussowitsch   PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ));
20001555c271SMatthew G. Knepley   PetscFunctionReturn(0);
20011555c271SMatthew G. Knepley }
20021555c271SMatthew G. Knepley 
2003d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user)
2004d71ae5a4SJacob Faibussowitsch {
2005338f77d5SMatthew G. Knepley   DM           dmAux = NULL;
200661aaff12SToby Isaac   PetscDS      prob, probAux = NULL;
200773d901b8SMatthew G. Knepley   PetscSection section, sectionAux;
2008338f77d5SMatthew G. Knepley   Vec          locX, locA;
2009c330f8ffSToby Isaac   PetscInt     dim, numCells = cEnd - cStart, c, f;
2010c330f8ffSToby Isaac   PetscBool    useFVM = PETSC_FALSE;
2011338f77d5SMatthew G. Knepley   /* DS */
2012338f77d5SMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x, numConstants;
2013338f77d5SMatthew G. Knepley   PetscInt           NfAux, totDimAux, *aOff;
2014338f77d5SMatthew G. Knepley   PetscScalar       *u, *a;
2015338f77d5SMatthew G. Knepley   const PetscScalar *constants;
2016338f77d5SMatthew G. Knepley   /* Geometry */
2017c330f8ffSToby Isaac   PetscFEGeom       *cgeomFEM;
2018338f77d5SMatthew G. Knepley   DM                 dmGrad;
2019c330f8ffSToby Isaac   PetscQuadrature    affineQuad      = NULL;
2020338f77d5SMatthew G. Knepley   Vec                cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL;
2021b5a3613cSMatthew G. Knepley   PetscFVCellGeom   *cgeomFVM;
2022338f77d5SMatthew G. Knepley   const PetscScalar *lgrad;
2023b7260050SToby Isaac   PetscInt           maxDegree;
2024c330f8ffSToby Isaac   DMField            coordField;
2025c330f8ffSToby Isaac   IS                 cellIS;
202673d901b8SMatthew G. Knepley 
202773d901b8SMatthew G. Knepley   PetscFunctionBegin;
20289566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
20299566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20309566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
20319566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
2032338f77d5SMatthew G. Knepley   /* Determine which discretizations we have */
2033b5a3613cSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2034b5a3613cSMatthew G. Knepley     PetscObject  obj;
2035b5a3613cSMatthew G. Knepley     PetscClassId id;
2036b5a3613cSMatthew G. Knepley 
20379566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20389566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2039338f77d5SMatthew G. Knepley     if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE;
2040338f77d5SMatthew G. Knepley   }
2041338f77d5SMatthew G. Knepley   /* Get local solution with boundary values */
20429566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
20439566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
20449566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
20459566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
2046338f77d5SMatthew G. Knepley   /* Read DS information */
20479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
20489566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
20499566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
20509566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS));
20519566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
2052338f77d5SMatthew G. Knepley   /* Read Auxiliary DS information */
20539566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
20549a2a23afSMatthew G. Knepley   if (locA) {
20559566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
20569566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
20579566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
20589566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
20599566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
20609566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
2061338f77d5SMatthew G. Knepley   }
2062338f77d5SMatthew G. Knepley   /* Allocate data  arrays */
20639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(numCells * totDim, &u));
20649566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
2065338f77d5SMatthew G. Knepley   /* Read out geometry */
20669566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
20679566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
2068b7260050SToby Isaac   if (maxDegree <= 1) {
20699566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
207048a46eb9SPierre Jolivet     if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM));
2071b5a3613cSMatthew G. Knepley   }
2072b5a3613cSMatthew G. Knepley   if (useFVM) {
2073338f77d5SMatthew G. Knepley     PetscFV   fv = NULL;
2074b5a3613cSMatthew G. Knepley     Vec       grad;
2075b5a3613cSMatthew G. Knepley     PetscInt  fStart, fEnd;
2076b5a3613cSMatthew G. Knepley     PetscBool compGrad;
2077b5a3613cSMatthew G. Knepley 
2078338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
2079338f77d5SMatthew G. Knepley       PetscObject  obj;
2080338f77d5SMatthew G. Knepley       PetscClassId id;
2081338f77d5SMatthew G. Knepley 
20829566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
20839566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
20849371c9d4SSatish Balay       if (id == PETSCFV_CLASSID) {
20859371c9d4SSatish Balay         fv = (PetscFV)obj;
20869371c9d4SSatish Balay         break;
20879371c9d4SSatish Balay       }
2088338f77d5SMatthew G. Knepley     }
20899566063dSJacob Faibussowitsch     PetscCall(PetscFVGetComputeGradients(fv, &compGrad));
20909566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE));
20919566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM));
20929566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad));
20939566063dSJacob Faibussowitsch     PetscCall(PetscFVSetComputeGradients(fv, compGrad));
20949566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
2095b5a3613cSMatthew G. Knepley     /* Reconstruct and limit cell gradients */
20969566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
20979566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalVector(dmGrad, &grad));
20989566063dSJacob Faibussowitsch     PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
2099b5a3613cSMatthew G. Knepley     /* Communicate gradient values */
21009566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dmGrad, &locGrad));
21019566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
21029566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
21039566063dSJacob Faibussowitsch     PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
2104b5a3613cSMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
21059566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad));
21069566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
2107b5a3613cSMatthew G. Knepley   }
2108338f77d5SMatthew G. Knepley   /* Read out data from inputs */
210973d901b8SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
211073d901b8SMatthew G. Knepley     PetscScalar *x = NULL;
211173d901b8SMatthew G. Knepley     PetscInt     i;
211273d901b8SMatthew G. Knepley 
21139566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x));
21140f2d7e86SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
21159566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x));
211673d901b8SMatthew G. Knepley     if (dmAux) {
21179566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x));
21180f2d7e86SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
21199566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x));
212073d901b8SMatthew G. Knepley     }
212173d901b8SMatthew G. Knepley   }
2122338f77d5SMatthew G. Knepley   /* Do integration for each field */
212373d901b8SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
2124c1f031eeSMatthew G. Knepley     PetscObject  obj;
2125c1f031eeSMatthew G. Knepley     PetscClassId id;
2126c1f031eeSMatthew G. Knepley     PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
212773d901b8SMatthew G. Knepley 
21289566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
21299566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
2130c1f031eeSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
2131c1f031eeSMatthew G. Knepley       PetscFE         fe = (PetscFE)obj;
2132c1f031eeSMatthew G. Knepley       PetscQuadrature q;
2133c330f8ffSToby Isaac       PetscFEGeom    *chunkGeom = NULL;
2134c1f031eeSMatthew G. Knepley       PetscInt        Nq, Nb;
2135c1f031eeSMatthew G. Knepley 
21369566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
21379566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
21389566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
21399566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
2140c1f031eeSMatthew G. Knepley       blockSize = Nb * Nq;
214173d901b8SMatthew G. Knepley       batchSize = numBlocks * blockSize;
21429566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
214373d901b8SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
214473d901b8SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
214573d901b8SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
214673d901b8SMatthew G. Knepley       offset    = numCells - Nr;
214748a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM));
21489566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
21499566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral));
21509566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom));
21519566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf]));
21529566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom));
215348a46eb9SPierre Jolivet       if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
2154c1f031eeSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
2155c1f031eeSMatthew G. Knepley       PetscInt       foff;
2156420e96edSMatthew G. Knepley       PetscPointFunc obj_func;
2157b69edc29SMatthew G. Knepley       PetscScalar    lint;
2158c1f031eeSMatthew G. Knepley 
21599566063dSJacob Faibussowitsch       PetscCall(PetscDSGetObjective(prob, f, &obj_func));
21609566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, f, &foff));
2161c1f031eeSMatthew G. Knepley       if (obj_func) {
2162c1f031eeSMatthew G. Knepley         for (c = 0; c < numCells; ++c) {
2163b5a3613cSMatthew G. Knepley           PetscScalar *u_x;
2164b5a3613cSMatthew G. Knepley 
21659566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x));
2166338f77d5SMatthew G. Knepley           obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint);
2167338f77d5SMatthew G. Knepley           cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume;
216873d901b8SMatthew G. Knepley         }
2169c1f031eeSMatthew G. Knepley       }
217063a3b9bcSJacob Faibussowitsch     } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
2171c1f031eeSMatthew G. Knepley   }
2172338f77d5SMatthew G. Knepley   /* Cleanup data arrays */
2173b5a3613cSMatthew G. Knepley   if (useFVM) {
21749566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
21759566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
21769566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
21779566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&faceGeometryFVM));
21789566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cellGeometryFVM));
21799566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&dmGrad));
2180b5a3613cSMatthew G. Knepley   }
21819566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscFree(a));
21829566063dSJacob Faibussowitsch   PetscCall(PetscFree(u));
2183338f77d5SMatthew G. Knepley   /* Cleanup */
218448a46eb9SPierre Jolivet   if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM));
21859566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&affineQuad));
21869566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
21879566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
2188338f77d5SMatthew G. Knepley   PetscFunctionReturn(0);
2189338f77d5SMatthew G. Knepley }
2190338f77d5SMatthew G. Knepley 
2191338f77d5SMatthew G. Knepley /*@
2192338f77d5SMatthew G. Knepley   DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user
2193338f77d5SMatthew G. Knepley 
2194338f77d5SMatthew G. Knepley   Input Parameters:
2195338f77d5SMatthew G. Knepley + dm - The mesh
2196338f77d5SMatthew G. Knepley . X  - Global input vector
2197338f77d5SMatthew G. Knepley - user - The user context
2198338f77d5SMatthew G. Knepley 
2199338f77d5SMatthew G. Knepley   Output Parameter:
2200338f77d5SMatthew G. Knepley . integral - Integral for each field
2201338f77d5SMatthew G. Knepley 
2202338f77d5SMatthew G. Knepley   Level: developer
2203338f77d5SMatthew G. Knepley 
2204db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()`
2205338f77d5SMatthew G. Knepley @*/
2206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user)
2207d71ae5a4SJacob Faibussowitsch {
2208338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2209b8feb594SMatthew G. Knepley   PetscScalar *cintegral, *lintegral;
2210412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2211338f77d5SMatthew G. Knepley 
2212338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2213338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2214338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2215dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 3);
22169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22179566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22189566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22199566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2220338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22219566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral));
22229566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2223338f77d5SMatthew G. Knepley   /* Sum up values */
2224338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2225338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2226338f77d5SMatthew G. Knepley 
22279566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
2228b8feb594SMatthew G. Knepley     for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f];
2229338f77d5SMatthew G. Knepley   }
22301c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm)));
223173d901b8SMatthew G. Knepley   if (mesh->printFEM) {
22329566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:"));
22339566063dSJacob Faibussowitsch     for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f])));
22349566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n"));
223573d901b8SMatthew G. Knepley   }
22369566063dSJacob Faibussowitsch   PetscCall(PetscFree2(lintegral, cintegral));
22379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
2238338f77d5SMatthew G. Knepley   PetscFunctionReturn(0);
2239338f77d5SMatthew G. Knepley }
2240338f77d5SMatthew G. Knepley 
2241338f77d5SMatthew G. Knepley /*@
2242338f77d5SMatthew G. Knepley   DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user
2243338f77d5SMatthew G. Knepley 
2244338f77d5SMatthew G. Knepley   Input Parameters:
2245338f77d5SMatthew G. Knepley + dm - The mesh
2246338f77d5SMatthew G. Knepley . X  - Global input vector
2247338f77d5SMatthew G. Knepley - user - The user context
2248338f77d5SMatthew G. Knepley 
2249338f77d5SMatthew G. Knepley   Output Parameter:
2250338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field
2251338f77d5SMatthew G. Knepley 
2252338f77d5SMatthew G. Knepley   Level: developer
2253338f77d5SMatthew G. Knepley 
2254db781477SPatrick Sanan .seealso: `DMPlexSNESComputeResidualFEM()`
2255338f77d5SMatthew G. Knepley @*/
2256d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user)
2257d71ae5a4SJacob Faibussowitsch {
2258338f77d5SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dm->data;
2259338f77d5SMatthew G. Knepley   DM           dmF;
2260338f77d5SMatthew G. Knepley   PetscSection sectionF;
2261338f77d5SMatthew G. Knepley   PetscScalar *cintegral, *af;
2262412e9a14SMatthew G. Knepley   PetscInt     Nf, f, cellHeight, cStart, cEnd, cell;
2263338f77d5SMatthew G. Knepley 
2264338f77d5SMatthew G. Knepley   PetscFunctionBegin;
2265338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2266338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
2267338f77d5SMatthew G. Knepley   PetscValidHeaderSpecific(F, VEC_CLASSID, 3);
22689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
22699566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
22709566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight));
22719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd));
2272338f77d5SMatthew G. Knepley   /* TODO Introduce a loop over large chunks (right now this is a single chunk) */
22739566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral));
22749566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user));
2275338f77d5SMatthew G. Knepley   /* Put values in F*/
22769566063dSJacob Faibussowitsch   PetscCall(VecGetDM(F, &dmF));
22779566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmF, &sectionF));
22789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &af));
2279338f77d5SMatthew G. Knepley   for (cell = cStart; cell < cEnd; ++cell) {
2280338f77d5SMatthew G. Knepley     const PetscInt c = cell - cStart;
2281338f77d5SMatthew G. Knepley     PetscInt       dof, off;
2282338f77d5SMatthew G. Knepley 
22839566063dSJacob Faibussowitsch     if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf]));
22849566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(sectionF, cell, &dof));
22859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(sectionF, cell, &off));
228663a3b9bcSJacob Faibussowitsch     PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf);
2287338f77d5SMatthew G. Knepley     for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f];
2288338f77d5SMatthew G. Knepley   }
22899566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &af));
22909566063dSJacob Faibussowitsch   PetscCall(PetscFree(cintegral));
22919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
229273d901b8SMatthew G. Knepley   PetscFunctionReturn(0);
229373d901b8SMatthew G. Knepley }
229473d901b8SMatthew G. Knepley 
2295d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user)
2296d71ae5a4SJacob Faibussowitsch {
22979b6f715bSMatthew G. Knepley   DM                 plex = NULL, plexA = NULL;
2298a6e0b375SMatthew G. Knepley   DMEnclosureType    encAux;
22999b6f715bSMatthew G. Knepley   PetscDS            prob, probAux       = NULL;
23009b6f715bSMatthew G. Knepley   PetscSection       section, sectionAux = NULL;
23019b6f715bSMatthew G. Knepley   Vec                locA = NULL;
23029b6f715bSMatthew G. Knepley   DMField            coordField;
23039b6f715bSMatthew G. Knepley   PetscInt           Nf, totDim, *uOff, *uOff_x;
23049b6f715bSMatthew G. Knepley   PetscInt           NfAux = 0, totDimAux = 0, *aOff = NULL;
23059b6f715bSMatthew G. Knepley   PetscScalar       *u, *a = NULL;
230664c72086SMatthew G. Knepley   const PetscScalar *constants;
23079b6f715bSMatthew G. Knepley   PetscInt           numConstants, f;
230864c72086SMatthew G. Knepley 
230964c72086SMatthew G. Knepley   PetscFunctionBegin;
23109566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
23119566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
23129566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
23139566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
23149566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
231564c72086SMatthew G. Knepley   /* Determine which discretizations we have */
23169b6f715bSMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
231764c72086SMatthew G. Knepley     PetscObject  obj;
231864c72086SMatthew G. Knepley     PetscClassId id;
231964c72086SMatthew G. Knepley 
23209566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
23219566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
232263a3b9bcSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f);
232364c72086SMatthew G. Knepley   }
232464c72086SMatthew G. Knepley   /* Read DS information */
23259566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
23269566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentOffsets(prob, &uOff));
23279566063dSJacob Faibussowitsch   PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x));
23289566063dSJacob Faibussowitsch   PetscCall(PetscDSGetConstants(prob, &numConstants, &constants));
232964c72086SMatthew G. Knepley   /* Read Auxiliary DS information */
23309566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
23319b6f715bSMatthew G. Knepley   if (locA) {
23329b6f715bSMatthew G. Knepley     DM dmAux;
23339b6f715bSMatthew G. Knepley 
23349566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
23359566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
23369566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
23379566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
23389566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(probAux, &NfAux));
23399566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
23409566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
23419566063dSJacob Faibussowitsch     PetscCall(PetscDSGetComponentOffsets(probAux, &aOff));
234264c72086SMatthew G. Knepley   }
23439b6f715bSMatthew G. Knepley   /* Integrate over points */
23449b6f715bSMatthew G. Knepley   {
23459b6f715bSMatthew G. Knepley     PetscFEGeom    *fgeom, *chunkGeom = NULL;
2346b7260050SToby Isaac     PetscInt        maxDegree;
23479b6f715bSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
23489b6f715bSMatthew G. Knepley     const PetscInt *points;
23499b6f715bSMatthew G. Knepley     PetscInt        numFaces, face, Nq, field;
23509b6f715bSMatthew G. Knepley     PetscInt        numChunks, chunkSize, chunk, Nr, offset;
235164c72086SMatthew G. Knepley 
23529566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
23539566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
23549566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a));
23559566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
235664c72086SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
235764c72086SMatthew G. Knepley       PetscFE fe;
235864c72086SMatthew G. Knepley 
23599566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe));
23609566063dSJacob Faibussowitsch       if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
23619b6f715bSMatthew G. Knepley       if (!qGeom) {
23629566063dSJacob Faibussowitsch         PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
23639566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)qGeom));
23649b6f715bSMatthew G. Knepley       }
23659566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
23669566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
23679b6f715bSMatthew G. Knepley       for (face = 0; face < numFaces; ++face) {
2368f15274beSMatthew Knepley         const PetscInt point = points[face], *support;
23699b6f715bSMatthew G. Knepley         PetscScalar   *x     = NULL;
2370f15274beSMatthew Knepley         PetscInt       i;
23719b6f715bSMatthew G. Knepley 
23729566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
23739566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
23749b6f715bSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
23759566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
23769b6f715bSMatthew G. Knepley         if (locA) {
23779b6f715bSMatthew G. Knepley           PetscInt subp;
23789566063dSJacob Faibussowitsch           PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
23799566063dSJacob Faibussowitsch           PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
23809b6f715bSMatthew G. Knepley           for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i];
23819566063dSJacob Faibussowitsch           PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
23829b6f715bSMatthew G. Knepley         }
23839b6f715bSMatthew G. Knepley       }
23849b6f715bSMatthew G. Knepley       /* Get blocking */
23859b6f715bSMatthew G. Knepley       {
23869b6f715bSMatthew G. Knepley         PetscQuadrature q;
23879b6f715bSMatthew G. Knepley         PetscInt        numBatches, batchSize, numBlocks, blockSize;
23889b6f715bSMatthew G. Knepley         PetscInt        Nq, Nb;
23899b6f715bSMatthew G. Knepley 
23909566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
23919566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &q));
23929566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL));
23939566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
239464c72086SMatthew G. Knepley         blockSize = Nb * Nq;
239564c72086SMatthew G. Knepley         batchSize = numBlocks * blockSize;
23969b6f715bSMatthew G. Knepley         chunkSize = numBatches * batchSize;
23979566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
23989b6f715bSMatthew G. Knepley         numChunks = numFaces / chunkSize;
23999b6f715bSMatthew G. Knepley         Nr        = numFaces % chunkSize;
240064c72086SMatthew G. Knepley         offset    = numFaces - Nr;
240164c72086SMatthew G. Knepley       }
24029b6f715bSMatthew G. Knepley       /* Do integration for each field */
24039b6f715bSMatthew G. Knepley       for (chunk = 0; chunk < numChunks; ++chunk) {
24049566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom));
24059566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral));
24069566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
240764c72086SMatthew G. Knepley       }
24089566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
24099566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf]));
24109566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
241164c72086SMatthew G. Knepley       /* Cleanup data arrays */
24129566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
24139566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&qGeom));
24149566063dSJacob Faibussowitsch       PetscCall(PetscFree2(u, a));
24159566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
241664c72086SMatthew G. Knepley     }
241764c72086SMatthew G. Knepley   }
24189566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
24199566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
24209b6f715bSMatthew G. Knepley   PetscFunctionReturn(0);
24219b6f715bSMatthew G. Knepley }
24229b6f715bSMatthew G. Knepley 
24239b6f715bSMatthew G. Knepley /*@
24249b6f715bSMatthew G. Knepley   DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user
24259b6f715bSMatthew G. Knepley 
24269b6f715bSMatthew G. Knepley   Input Parameters:
24279b6f715bSMatthew G. Knepley + dm      - The mesh
24289b6f715bSMatthew G. Knepley . X       - Global input vector
24299b6f715bSMatthew G. Knepley . label   - The boundary DMLabel
24309b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values
24319b6f715bSMatthew G. Knepley . vals    - The label values to use, or PETSC_NULL for all values
243267b8a455SSatish Balay . func    - The function to integrate along the boundary
24339b6f715bSMatthew G. Knepley - user    - The user context
24349b6f715bSMatthew G. Knepley 
24359b6f715bSMatthew G. Knepley   Output Parameter:
24369b6f715bSMatthew G. Knepley . integral - Integral for each field
24379b6f715bSMatthew G. Knepley 
24389b6f715bSMatthew G. Knepley   Level: developer
24399b6f715bSMatthew G. Knepley 
2440db781477SPatrick Sanan .seealso: `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()`
24419b6f715bSMatthew G. Knepley @*/
2442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user)
2443d71ae5a4SJacob Faibussowitsch {
24449b6f715bSMatthew G. Knepley   Vec          locX;
24459b6f715bSMatthew G. Knepley   PetscSection section;
24469b6f715bSMatthew G. Knepley   DMLabel      depthLabel;
24479b6f715bSMatthew G. Knepley   IS           facetIS;
24489b6f715bSMatthew G. Knepley   PetscInt     dim, Nf, f, v;
24499b6f715bSMatthew G. Knepley 
24509b6f715bSMatthew G. Knepley   PetscFunctionBegin;
24519b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
24529b6f715bSMatthew G. Knepley   PetscValidHeaderSpecific(X, VEC_CLASSID, 2);
24539b6f715bSMatthew G. Knepley   PetscValidPointer(label, 3);
2454dadcf809SJacob Faibussowitsch   if (vals) PetscValidIntPointer(vals, 5);
2455dadcf809SJacob Faibussowitsch   PetscValidScalarPointer(integral, 7);
24569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0));
24579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
24589566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24599566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
24609566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
24619566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(section, &Nf));
24629b6f715bSMatthew G. Knepley   /* Get local solution with boundary values */
24639566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &locX));
24649566063dSJacob Faibussowitsch   PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL));
24659566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX));
24669566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX));
24679b6f715bSMatthew G. Knepley   /* Loop over label values */
24689566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(integral, Nf));
24699b6f715bSMatthew G. Knepley   for (v = 0; v < numVals; ++v) {
24709b6f715bSMatthew G. Knepley     IS           pointIS;
24719b6f715bSMatthew G. Knepley     PetscInt     numFaces, face;
24729b6f715bSMatthew G. Knepley     PetscScalar *fintegral;
24739b6f715bSMatthew G. Knepley 
24749566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS));
24759b6f715bSMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
24769b6f715bSMatthew G. Knepley     {
24779b6f715bSMatthew G. Knepley       IS isectIS;
24789b6f715bSMatthew G. Knepley 
24799b6f715bSMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
24809566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
24819566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
24829b6f715bSMatthew G. Knepley       pointIS = isectIS;
24839b6f715bSMatthew G. Knepley     }
24849566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
24859566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(numFaces * Nf, &fintegral));
24869566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user));
24879b6f715bSMatthew G. Knepley     /* Sum point contributions into integral */
24889371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
24899371c9d4SSatish Balay       for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f];
24909566063dSJacob Faibussowitsch     PetscCall(PetscFree(fintegral));
24919566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
24929b6f715bSMatthew G. Knepley   }
24939566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &locX));
24949566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
24959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0));
249664c72086SMatthew G. Knepley   PetscFunctionReturn(0);
249764c72086SMatthew G. Knepley }
249864c72086SMatthew G. Knepley 
2499d69c5d34SMatthew G. Knepley /*@
2500cf51de39SMatthew G. Knepley   DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to a uniformly refined DM.
2501d69c5d34SMatthew G. Knepley 
2502d69c5d34SMatthew G. Knepley   Input Parameters:
2503cf51de39SMatthew G. Knepley + dmc  - The coarse mesh
2504cf51de39SMatthew G. Knepley . dmf  - The fine mesh
2505cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology
2506d69c5d34SMatthew G. Knepley - user - The user context
2507d69c5d34SMatthew G. Knepley 
2508d69c5d34SMatthew G. Knepley   Output Parameter:
2509934789fcSMatthew G. Knepley . In  - The interpolation matrix
2510d69c5d34SMatthew G. Knepley 
2511d69c5d34SMatthew G. Knepley   Level: developer
2512d69c5d34SMatthew G. Knepley 
2513db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2514d69c5d34SMatthew G. Knepley @*/
2515d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user)
2516d71ae5a4SJacob Faibussowitsch {
2517d69c5d34SMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmc->data;
2518d69c5d34SMatthew G. Knepley   const char  *name = "Interpolator";
2519d69c5d34SMatthew G. Knepley   PetscFE     *feRef;
252097c42addSMatthew G. Knepley   PetscFV     *fvRef;
2521d69c5d34SMatthew G. Knepley   PetscSection fsection, fglobalSection;
2522d69c5d34SMatthew G. Knepley   PetscSection csection, cglobalSection;
2523d69c5d34SMatthew G. Knepley   PetscScalar *elemMat;
2524485ad865SMatthew G. Knepley   PetscInt     dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c;
25252ea9c922SToby Isaac   PetscInt     cTotDim = 0, rTotDim = 0;
2526d69c5d34SMatthew G. Knepley 
2527d69c5d34SMatthew G. Knepley   PetscFunctionBegin;
25289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
25299566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
25309566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
25319566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
25329566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
25339566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
25349566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
25359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
25369566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef));
2537d69c5d34SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
25382ea9c922SToby Isaac     PetscObject  obj, objc;
25392ea9c922SToby Isaac     PetscClassId id, idc;
25402ea9c922SToby Isaac     PetscInt     rNb = 0, Nc = 0, cNb = 0;
2541d69c5d34SMatthew G. Knepley 
25429566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmf, f, NULL, &obj));
25439566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
254497c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
254597c42addSMatthew G. Knepley       PetscFE fe = (PetscFE)obj;
254697c42addSMatthew G. Knepley 
2547cf51de39SMatthew G. Knepley       if (isRefined) {
25489566063dSJacob Faibussowitsch         PetscCall(PetscFERefine(fe, &feRef[f]));
2549cf51de39SMatthew G. Knepley       } else {
25509566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fe));
2551cf51de39SMatthew G. Knepley         feRef[f] = fe;
2552cf51de39SMatthew G. Knepley       }
25539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &rNb));
25549566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
255597c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
255697c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
255797c42addSMatthew G. Knepley       PetscDualSpace Q;
255897c42addSMatthew G. Knepley 
2559cf51de39SMatthew G. Knepley       if (isRefined) {
25609566063dSJacob Faibussowitsch         PetscCall(PetscFVRefine(fv, &fvRef[f]));
2561cf51de39SMatthew G. Knepley       } else {
25629566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)fv));
2563cf51de39SMatthew G. Knepley         fvRef[f] = fv;
2564cf51de39SMatthew G. Knepley       }
25659566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
25669566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &rNb));
25679566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25689566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
256997c42addSMatthew G. Knepley     }
25709566063dSJacob Faibussowitsch     PetscCall(DMGetField(dmc, f, NULL, &objc));
25719566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(objc, &idc));
25722ea9c922SToby Isaac     if (idc == PETSCFE_CLASSID) {
25732ea9c922SToby Isaac       PetscFE fe = (PetscFE)objc;
25742ea9c922SToby Isaac 
25759566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &cNb));
25762ea9c922SToby Isaac     } else if (id == PETSCFV_CLASSID) {
25772ea9c922SToby Isaac       PetscFV        fv = (PetscFV)obj;
25782ea9c922SToby Isaac       PetscDualSpace Q;
25792ea9c922SToby Isaac 
25809566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fv, &Q));
25819566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &cNb));
2582d69c5d34SMatthew G. Knepley     }
25832ea9c922SToby Isaac     rTotDim += rNb;
25842ea9c922SToby Isaac     cTotDim += cNb;
25852ea9c922SToby Isaac   }
25869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat));
25879566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim));
2588d69c5d34SMatthew G. Knepley   for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) {
2589d69c5d34SMatthew G. Knepley     PetscDualSpace   Qref;
2590d69c5d34SMatthew G. Knepley     PetscQuadrature  f;
2591d69c5d34SMatthew G. Knepley     const PetscReal *qpoints, *qweights;
2592d69c5d34SMatthew G. Knepley     PetscReal       *points;
2593d69c5d34SMatthew G. Knepley     PetscInt         npoints = 0, Nc, Np, fpdim, i, k, p, d;
2594d69c5d34SMatthew G. Knepley 
2595d69c5d34SMatthew G. Knepley     /* Compose points from all dual basis functionals */
259697c42addSMatthew G. Knepley     if (feRef[fieldI]) {
25979566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref));
25989566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc));
259997c42addSMatthew G. Knepley     } else {
26009566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref));
26019566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc));
260297c42addSMatthew G. Knepley     }
26039566063dSJacob Faibussowitsch     PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim));
2604d69c5d34SMatthew G. Knepley     for (i = 0; i < fpdim; ++i) {
26059566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26069566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL));
2607d69c5d34SMatthew G. Knepley       npoints += Np;
2608d69c5d34SMatthew G. Knepley     }
26099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(npoints * dim, &points));
2610d69c5d34SMatthew G. Knepley     for (i = 0, k = 0; i < fpdim; ++i) {
26119566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26129566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL));
26139371c9d4SSatish Balay       for (p = 0; p < Np; ++p, ++k)
26149371c9d4SSatish Balay         for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d];
2615d69c5d34SMatthew G. Knepley     }
2616d69c5d34SMatthew G. Knepley 
2617d69c5d34SMatthew G. Knepley     for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) {
261897c42addSMatthew G. Knepley       PetscObject  obj;
261997c42addSMatthew G. Knepley       PetscClassId id;
26209c3cf19fSMatthew G. Knepley       PetscInt     NcJ = 0, cpdim = 0, j, qNc;
2621d69c5d34SMatthew G. Knepley 
26229566063dSJacob Faibussowitsch       PetscCall(DMGetField(dmc, fieldJ, NULL, &obj));
26239566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
262497c42addSMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
262597c42addSMatthew G. Knepley         PetscFE         fe = (PetscFE)obj;
2626ef0bb6c7SMatthew G. Knepley         PetscTabulation T  = NULL;
2627d69c5d34SMatthew G. Knepley 
2628d69c5d34SMatthew G. Knepley         /* Evaluate basis at points */
26299566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &NcJ));
26309566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &cpdim));
2631ffe73a53SMatthew G. Knepley         /* For now, fields only interpolate themselves */
2632ffe73a53SMatthew G. Knepley         if (fieldI == fieldJ) {
263363a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
26349566063dSJacob Faibussowitsch           PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T));
2635d69c5d34SMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26369566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26379566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
263863a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
2639d69c5d34SMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
264036a6d9c0SMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2641d172c84bSMatthew G. Knepley                 /*
2642d172c84bSMatthew G. Knepley                    cTotDim:            Total columns in element interpolation matrix, sum of number of dual basis functionals in each field
2643d172c84bSMatthew G. Knepley                    offsetI, offsetJ:   Offsets into the larger element interpolation matrix for different fields
2644d172c84bSMatthew G. Knepley                    fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals
2645d172c84bSMatthew G. Knepley                    qNC, Nc, Ncj, c:    Number of components in this field
2646d172c84bSMatthew G. Knepley                    Np, p:              Number of quad points in the fine grid functional i
2647d172c84bSMatthew G. Knepley                    k:                  i*Np + p, overall point number for the interpolation
2648d172c84bSMatthew G. Knepley                 */
2649ef0bb6c7SMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c];
265036a6d9c0SMatthew G. Knepley               }
2651d69c5d34SMatthew G. Knepley             }
2652d69c5d34SMatthew G. Knepley           }
26539566063dSJacob Faibussowitsch           PetscCall(PetscTabulationDestroy(&T));
2654ffe73a53SMatthew G. Knepley         }
265597c42addSMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
265697c42addSMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
265797c42addSMatthew G. Knepley 
265897c42addSMatthew G. Knepley         /* Evaluate constant function at points */
26599566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &NcJ));
266097c42addSMatthew G. Knepley         cpdim = 1;
266197c42addSMatthew G. Knepley         /* For now, fields only interpolate themselves */
266297c42addSMatthew G. Knepley         if (fieldI == fieldJ) {
266363a3b9bcSJacob Faibussowitsch           PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ);
266497c42addSMatthew G. Knepley           for (i = 0, k = 0; i < fpdim; ++i) {
26659566063dSJacob Faibussowitsch             PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f));
26669566063dSJacob Faibussowitsch             PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights));
266763a3b9bcSJacob Faibussowitsch             PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ);
266897c42addSMatthew G. Knepley             for (p = 0; p < Np; ++p, ++k) {
266997c42addSMatthew G. Knepley               for (j = 0; j < cpdim; ++j) {
2670458eb97cSMatthew G. Knepley                 for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c];
267197c42addSMatthew G. Knepley               }
267297c42addSMatthew G. Knepley             }
267397c42addSMatthew G. Knepley           }
267497c42addSMatthew G. Knepley         }
267597c42addSMatthew G. Knepley       }
2676d172c84bSMatthew G. Knepley       offsetJ += cpdim;
2677d69c5d34SMatthew G. Knepley     }
2678d172c84bSMatthew G. Knepley     offsetI += fpdim;
26799566063dSJacob Faibussowitsch     PetscCall(PetscFree(points));
2680d69c5d34SMatthew G. Knepley   }
26819566063dSJacob Faibussowitsch   if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat));
26827f5b169aSMatthew G. Knepley   /* Preallocate matrix */
26837f5b169aSMatthew G. Knepley   {
2684c094ef40SMatthew G. Knepley     Mat          preallocator;
2685c094ef40SMatthew G. Knepley     PetscScalar *vals;
2686c094ef40SMatthew G. Knepley     PetscInt    *cellCIndices, *cellFIndices;
2687c094ef40SMatthew G. Knepley     PetscInt     locRows, locCols, cell;
26887f5b169aSMatthew G. Knepley 
26899566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(In, &locRows, &locCols));
26909566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator));
26919566063dSJacob Faibussowitsch     PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
26929566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
26939566063dSJacob Faibussowitsch     PetscCall(MatSetUp(preallocator));
26949566063dSJacob Faibussowitsch     PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices));
26957f5b169aSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2696cf51de39SMatthew G. Knepley       if (isRefined) {
26979566063dSJacob Faibussowitsch         PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices));
26989566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES));
2699cf51de39SMatthew G. Knepley       } else {
27009566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES));
2701cf51de39SMatthew G. Knepley       }
27027f5b169aSMatthew G. Knepley     }
27039566063dSJacob Faibussowitsch     PetscCall(PetscFree3(vals, cellCIndices, cellFIndices));
27049566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
27059566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
27069566063dSJacob Faibussowitsch     PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In));
27079566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&preallocator));
27087f5b169aSMatthew G. Knepley   }
27097f5b169aSMatthew G. Knepley   /* Fill matrix */
27109566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(In));
2711d69c5d34SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2712cf51de39SMatthew G. Knepley     if (isRefined) {
27139566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2714cf51de39SMatthew G. Knepley     } else {
27159566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES));
2716cf51de39SMatthew G. Knepley     }
2717d69c5d34SMatthew G. Knepley   }
27189566063dSJacob Faibussowitsch   for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f]));
27199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(feRef, fvRef));
27209566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
27219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
27229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
27239318fe57SMatthew G. Knepley   if (mesh->printFEM > 1) {
27249566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name));
27259566063dSJacob Faibussowitsch     PetscCall(MatChop(In, 1.0e-10));
27269566063dSJacob Faibussowitsch     PetscCall(MatView(In, NULL));
2727d69c5d34SMatthew G. Knepley   }
27289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
2729d69c5d34SMatthew G. Knepley   PetscFunctionReturn(0);
2730d69c5d34SMatthew G. Knepley }
27316c73c22cSMatthew G. Knepley 
2732d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user)
2733d71ae5a4SJacob Faibussowitsch {
2734bd041c0cSMatthew G. Knepley   SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness");
2735bd041c0cSMatthew G. Knepley }
2736bd041c0cSMatthew G. Knepley 
273768132eb9SMatthew G. Knepley /*@
273868132eb9SMatthew G. Knepley   DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM.
273968132eb9SMatthew G. Knepley 
274068132eb9SMatthew G. Knepley   Input Parameters:
274168132eb9SMatthew G. Knepley + dmf  - The fine mesh
274268132eb9SMatthew G. Knepley . dmc  - The coarse mesh
274368132eb9SMatthew G. Knepley - user - The user context
274468132eb9SMatthew G. Knepley 
274568132eb9SMatthew G. Knepley   Output Parameter:
274668132eb9SMatthew G. Knepley . In  - The interpolation matrix
274768132eb9SMatthew G. Knepley 
274868132eb9SMatthew G. Knepley   Level: developer
274968132eb9SMatthew G. Knepley 
2750db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
275168132eb9SMatthew G. Knepley @*/
2752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user)
2753d71ae5a4SJacob Faibussowitsch {
275464e98e1dSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
275564e98e1dSMatthew G. Knepley   const char  *name = "Interpolator";
27564ef9d792SMatthew G. Knepley   PetscDS      prob;
2757a0806964SMatthew G. Knepley   Mat          interp;
2758a0806964SMatthew G. Knepley   PetscSection fsection, globalFSection;
2759a0806964SMatthew G. Knepley   PetscSection csection, globalCSection;
2760a0806964SMatthew G. Knepley   PetscInt     locRows, locCols;
27614ef9d792SMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
27624ef9d792SMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
27634ef9d792SMatthew G. Knepley   PetscScalar *elemMat;
2764a0806964SMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s;
27654ef9d792SMatthew G. Knepley 
27664ef9d792SMatthew G. Knepley   PetscFunctionBegin;
27679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
27689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
27699566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
27709566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
27719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
27729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
27739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
27749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
27759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
27769566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
27779566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
2778a0806964SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd));
27799566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
27809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
27814ef9d792SMatthew G. Knepley 
2782a0806964SMatthew G. Knepley   PetscCall(MatGetLocalSize(In, &locRows, &locCols));
2783a0806964SMatthew G. Knepley   PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp));
2784a0806964SMatthew G. Knepley   PetscCall(MatSetType(interp, MATPREALLOCATOR));
2785a0806964SMatthew G. Knepley   PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE));
2786a0806964SMatthew G. Knepley   PetscCall(MatSetUp(interp));
2787a0806964SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
27884ef9d792SMatthew G. Knepley     for (field = 0; field < Nf; ++field) {
27894ef9d792SMatthew G. Knepley       PetscObject      obj;
27904ef9d792SMatthew G. Knepley       PetscClassId     id;
2791c0d7054bSMatthew G. Knepley       PetscDualSpace   Q = NULL;
2792ef0bb6c7SMatthew G. Knepley       PetscTabulation  T = NULL;
27934ef9d792SMatthew G. Knepley       PetscQuadrature  f;
27944ef9d792SMatthew G. Knepley       const PetscReal *qpoints, *qweights;
2795d0f6233fSMatthew G. Knepley       PetscInt         Nc, qNc, Np, fpdim, off, i, d;
27964ef9d792SMatthew G. Knepley 
2797d0f6233fSMatthew G. Knepley       PetscCall(PetscDSGetFieldOffset(prob, field, &off));
27989566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, &obj));
27999566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
28004ef9d792SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
28014ef9d792SMatthew G. Knepley         PetscFE fe = (PetscFE)obj;
28024ef9d792SMatthew G. Knepley 
28039566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &Q));
28049566063dSJacob Faibussowitsch         PetscCall(PetscFEGetNumComponents(fe, &Nc));
2805a0806964SMatthew G. Knepley         if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T));
28064ef9d792SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
28074ef9d792SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
28084ef9d792SMatthew G. Knepley 
28099566063dSJacob Faibussowitsch         PetscCall(PetscFVGetDualSpace(fv, &Q));
28104ef9d792SMatthew G. Knepley         Nc = 1;
281163a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field);
28129566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fpdim));
28134ef9d792SMatthew G. Knepley       /* For each fine grid cell */
28144ef9d792SMatthew G. Knepley       for (cell = cStart; cell < cEnd; ++cell) {
28154ef9d792SMatthew G. Knepley         PetscInt *findices, *cindices;
28164ef9d792SMatthew G. Knepley         PetscInt  numFIndices, numCIndices;
28174ef9d792SMatthew G. Knepley 
28189566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28199566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2820d0f6233fSMatthew G. Knepley         PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim);
28214ef9d792SMatthew G. Knepley         for (i = 0; i < fpdim; ++i) {
28224ef9d792SMatthew G. Knepley           Vec                pointVec;
28234ef9d792SMatthew G. Knepley           PetscScalar       *pV;
282412111d7cSToby Isaac           PetscSF            coarseCellSF = NULL;
28253a93e3b7SToby Isaac           const PetscSFNode *coarseCells;
2826d0f6233fSMatthew G. Knepley           PetscInt           numCoarseCells, cpdim, row = findices[i + off], q, c, j;
28274ef9d792SMatthew G. Knepley 
28284ef9d792SMatthew G. Knepley           /* Get points from the dual basis functional quadrature */
28299566063dSJacob Faibussowitsch           PetscCall(PetscDualSpaceGetFunctional(Q, i, &f));
28309566063dSJacob Faibussowitsch           PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights));
283163a3b9bcSJacob Faibussowitsch           PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc);
28329566063dSJacob Faibussowitsch           PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec));
28339566063dSJacob Faibussowitsch           PetscCall(VecSetBlockSize(pointVec, dim));
28349566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28354ef9d792SMatthew G. Knepley           for (q = 0; q < Np; ++q) {
2836c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2837c330f8ffSToby Isaac 
28384ef9d792SMatthew G. Knepley             /* Transform point to real space */
2839c330f8ffSToby Isaac             CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
28404ef9d792SMatthew G. Knepley             for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
28414ef9d792SMatthew G. Knepley           }
28429566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28434ef9d792SMatthew G. Knepley           /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
28441555c271SMatthew G. Knepley           /* OPT: Read this out from preallocation information */
28459566063dSJacob Faibussowitsch           PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
28464ef9d792SMatthew G. Knepley           /* Update preallocation info */
28479566063dSJacob Faibussowitsch           PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
28485f80ce2aSJacob Faibussowitsch           PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
28499566063dSJacob Faibussowitsch           PetscCall(VecGetArray(pointVec, &pV));
28504ef9d792SMatthew G. Knepley           for (ccell = 0; ccell < numCoarseCells; ++ccell) {
2851826eb36dSMatthew G. Knepley             PetscReal       pVReal[3];
2852c330f8ffSToby Isaac             const PetscReal xi0[3] = {-1., -1., -1.};
2853826eb36dSMatthew G. Knepley 
28549566063dSJacob Faibussowitsch             PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
2855a0806964SMatthew G. Knepley             if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim));
2856a0806964SMatthew G. Knepley             else cpdim = 1;
2857a0806964SMatthew G. Knepley 
2858a0806964SMatthew G. Knepley             if (s) {
28594ef9d792SMatthew G. Knepley               /* Transform points from real space to coarse reference space */
28609566063dSJacob Faibussowitsch               PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
2861e2d86523SMatthew G. Knepley               for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
2862c330f8ffSToby Isaac               CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
28634ef9d792SMatthew G. Knepley 
28644ef9d792SMatthew G. Knepley               if (id == PETSCFE_CLASSID) {
28654ef9d792SMatthew G. Knepley                 /* Evaluate coarse basis on contained point */
2866a0806964SMatthew G. Knepley                 PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T));
28679566063dSJacob Faibussowitsch                 PetscCall(PetscArrayzero(elemMat, cpdim));
28684ef9d792SMatthew G. Knepley                 /* Get elemMat entries by multiplying by weight */
28694ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
2870ef0bb6c7SMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c];
28714ef9d792SMatthew G. Knepley                 }
28724ef9d792SMatthew G. Knepley               } else {
28734ef9d792SMatthew G. Knepley                 for (j = 0; j < cpdim; ++j) {
28749c3cf19fSMatthew G. Knepley                   for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c];
28754ef9d792SMatthew G. Knepley                 }
28764ef9d792SMatthew G. Knepley               }
28779566063dSJacob Faibussowitsch               if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
2878a0806964SMatthew G. Knepley             }
2879a0806964SMatthew G. Knepley             /* Update interpolator */
2880d0f6233fSMatthew G. Knepley             PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim);
2881a0806964SMatthew G. Knepley             PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES));
28829566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
28834ef9d792SMatthew G. Knepley           }
28849566063dSJacob Faibussowitsch           PetscCall(VecRestoreArray(pointVec, &pV));
28859566063dSJacob Faibussowitsch           PetscCall(PetscSFDestroy(&coarseCellSF));
28869566063dSJacob Faibussowitsch           PetscCall(VecDestroy(&pointVec));
28874ef9d792SMatthew G. Knepley         }
28889566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
28894ef9d792SMatthew G. Knepley       }
2890a0806964SMatthew G. Knepley       if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
2891a0806964SMatthew G. Knepley     }
2892a0806964SMatthew G. Knepley     if (!s) {
2893a0806964SMatthew G. Knepley       PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY));
2894a0806964SMatthew G. Knepley       PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY));
2895a0806964SMatthew G. Knepley       PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In));
2896a0806964SMatthew G. Knepley       PetscCall(MatDestroy(&interp));
2897a0806964SMatthew G. Knepley       interp = In;
2898a0806964SMatthew G. Knepley     }
28994ef9d792SMatthew G. Knepley   }
29009566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
29019566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
29029566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
29039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY));
29049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY));
29059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0));
29064ef9d792SMatthew G. Knepley   PetscFunctionReturn(0);
29074ef9d792SMatthew G. Knepley }
29084ef9d792SMatthew G. Knepley 
290946fa42a0SMatthew G. Knepley /*@
2910bd041c0cSMatthew G. Knepley   DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM.
2911bd041c0cSMatthew G. Knepley 
2912bd041c0cSMatthew G. Knepley   Input Parameters:
2913bd041c0cSMatthew G. Knepley + dmf  - The fine mesh
2914bd041c0cSMatthew G. Knepley . dmc  - The coarse mesh
2915bd041c0cSMatthew G. Knepley - user - The user context
2916bd041c0cSMatthew G. Knepley 
2917bd041c0cSMatthew G. Knepley   Output Parameter:
2918bd041c0cSMatthew G. Knepley . mass  - The mass matrix
2919bd041c0cSMatthew G. Knepley 
2920bd041c0cSMatthew G. Knepley   Level: developer
2921bd041c0cSMatthew G. Knepley 
2922db781477SPatrick Sanan .seealso: `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()`
2923bd041c0cSMatthew G. Knepley @*/
2924d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user)
2925d71ae5a4SJacob Faibussowitsch {
2926bd041c0cSMatthew G. Knepley   DM_Plex     *mesh = (DM_Plex *)dmf->data;
2927bd041c0cSMatthew G. Knepley   const char  *name = "Mass Matrix";
2928bd041c0cSMatthew G. Knepley   PetscDS      prob;
2929bd041c0cSMatthew G. Knepley   PetscSection fsection, csection, globalFSection, globalCSection;
2930e8f14785SLisandro Dalcin   PetscHSetIJ  ht;
2931bd041c0cSMatthew G. Knepley   PetscLayout  rLayout;
2932bd041c0cSMatthew G. Knepley   PetscInt    *dnz, *onz;
2933bd041c0cSMatthew G. Knepley   PetscInt     locRows, rStart, rEnd;
2934bd041c0cSMatthew G. Knepley   PetscReal   *x, *v0, *J, *invJ, detJ;
2935bd041c0cSMatthew G. Knepley   PetscReal   *v0c, *Jc, *invJc, detJc;
2936bd041c0cSMatthew G. Knepley   PetscScalar *elemMat;
2937bd041c0cSMatthew G. Knepley   PetscInt     dim, Nf, field, totDim, cStart, cEnd, cell, ccell;
2938bd041c0cSMatthew G. Knepley 
2939bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
29409566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dmc, &dim));
29419566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
29429566063dSJacob Faibussowitsch   PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL));
29439566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
29449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ));
29459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc));
29469566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
29479566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &globalFSection));
29489566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
29499566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &globalCSection));
29509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd));
29519566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
29529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(totDim, &elemMat));
2953bd041c0cSMatthew G. Knepley 
29549566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mass, &locRows, NULL));
29559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout));
29569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(rLayout, locRows));
29579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(rLayout, 1));
29589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rLayout));
29599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd));
29609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rLayout));
29619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz));
29629566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJCreate(&ht));
2963bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
2964bd041c0cSMatthew G. Knepley     PetscObject      obj;
2965bd041c0cSMatthew G. Knepley     PetscClassId     id;
2966bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
2967bd041c0cSMatthew G. Knepley     const PetscReal *qpoints;
2968bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
2969bd041c0cSMatthew G. Knepley 
29709566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
29719566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
29729566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
29739566063dSJacob Faibussowitsch     else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
29749566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL));
2975bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
2976bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
2977bd041c0cSMatthew G. Knepley       Vec                pointVec;
2978bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
2979bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
2980bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
2981bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, q, c;
2982bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
2983bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
2984bd041c0cSMatthew G. Knepley 
29859566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
29869566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
2987bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
29889566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
29899566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
29909566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
2991bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
2992c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
2993c330f8ffSToby Isaac 
2994bd041c0cSMatthew G. Knepley         /* Transform point to real space */
2995c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
2996bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
2997bd041c0cSMatthew G. Knepley       }
29989566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
2999bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30009566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
30019566063dSJacob Faibussowitsch       PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view"));
3002bd041c0cSMatthew G. Knepley       /* Update preallocation info */
30039566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30045f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
3005bd041c0cSMatthew G. Knepley       {
3006e8f14785SLisandro Dalcin         PetscHashIJKey key;
3007e8f14785SLisandro Dalcin         PetscBool      missing;
3008bd041c0cSMatthew G. Knepley 
3009bd041c0cSMatthew G. Knepley         for (i = 0; i < numFIndices; ++i) {
3010e8f14785SLisandro Dalcin           key.i = findices[i];
3011e8f14785SLisandro Dalcin           if (key.i >= 0) {
3012bd041c0cSMatthew G. Knepley             /* Get indices for coarse elements */
3013bd041c0cSMatthew G. Knepley             for (ccell = 0; ccell < numCoarseCells; ++ccell) {
30149566063dSJacob Faibussowitsch               PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3015bd041c0cSMatthew G. Knepley               for (c = 0; c < numCIndices; ++c) {
3016e8f14785SLisandro Dalcin                 key.j = cindices[c];
3017e8f14785SLisandro Dalcin                 if (key.j < 0) continue;
30189566063dSJacob Faibussowitsch                 PetscCall(PetscHSetIJQueryAdd(ht, key, &missing));
3019bd041c0cSMatthew G. Knepley                 if (missing) {
3020e8f14785SLisandro Dalcin                   if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart];
3021e8f14785SLisandro Dalcin                   else ++onz[key.i - rStart];
3022bd041c0cSMatthew G. Knepley                 }
3023bd041c0cSMatthew G. Knepley               }
30249566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3025bd041c0cSMatthew G. Knepley             }
3026bd041c0cSMatthew G. Knepley           }
3027bd041c0cSMatthew G. Knepley         }
3028bd041c0cSMatthew G. Knepley       }
30299566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
30309566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
30319566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3032bd041c0cSMatthew G. Knepley     }
3033bd041c0cSMatthew G. Knepley   }
30349566063dSJacob Faibussowitsch   PetscCall(PetscHSetIJDestroy(&ht));
30359566063dSJacob Faibussowitsch   PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL));
30369566063dSJacob Faibussowitsch   PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
30379566063dSJacob Faibussowitsch   PetscCall(PetscFree2(dnz, onz));
3038bd041c0cSMatthew G. Knepley   for (field = 0; field < Nf; ++field) {
3039bd041c0cSMatthew G. Knepley     PetscObject      obj;
3040bd041c0cSMatthew G. Knepley     PetscClassId     id;
3041ef0bb6c7SMatthew G. Knepley     PetscTabulation  T, Tfine;
3042bd041c0cSMatthew G. Knepley     PetscQuadrature  quad;
3043bd041c0cSMatthew G. Knepley     const PetscReal *qpoints, *qweights;
3044bd041c0cSMatthew G. Knepley     PetscInt         Nq, Nc, i, d;
3045bd041c0cSMatthew G. Knepley 
30469566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
30479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3048ef0bb6c7SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
30499566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad));
30509566063dSJacob Faibussowitsch       PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine));
30519566063dSJacob Faibussowitsch       PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T));
3052ef0bb6c7SMatthew G. Knepley     } else {
30539566063dSJacob Faibussowitsch       PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad));
3054ef0bb6c7SMatthew G. Knepley     }
30559566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights));
3056bd041c0cSMatthew G. Knepley     /* For each fine grid cell */
3057bd041c0cSMatthew G. Knepley     for (cell = cStart; cell < cEnd; ++cell) {
3058bd041c0cSMatthew G. Knepley       Vec                pointVec;
3059bd041c0cSMatthew G. Knepley       PetscScalar       *pV;
3060bd041c0cSMatthew G. Knepley       PetscSF            coarseCellSF = NULL;
3061bd041c0cSMatthew G. Knepley       const PetscSFNode *coarseCells;
3062bd041c0cSMatthew G. Knepley       PetscInt           numCoarseCells, cpdim, q, c, j;
3063bd041c0cSMatthew G. Knepley       PetscInt          *findices, *cindices;
3064bd041c0cSMatthew G. Knepley       PetscInt           numFIndices, numCIndices;
3065bd041c0cSMatthew G. Knepley 
30669566063dSJacob Faibussowitsch       PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
30679566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ));
3068bd041c0cSMatthew G. Knepley       /* Get points from the quadrature */
30699566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec));
30709566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(pointVec, dim));
30719566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3072bd041c0cSMatthew G. Knepley       for (q = 0; q < Nq; ++q) {
3073c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3074c330f8ffSToby Isaac 
3075bd041c0cSMatthew G. Knepley         /* Transform point to real space */
3076c330f8ffSToby Isaac         CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x);
3077bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d];
3078bd041c0cSMatthew G. Knepley       }
30799566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
3080bd041c0cSMatthew G. Knepley       /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */
30819566063dSJacob Faibussowitsch       PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF));
3082bd041c0cSMatthew G. Knepley       /* Update matrix */
30839566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells));
30845f80ce2aSJacob Faibussowitsch       PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located");
30859566063dSJacob Faibussowitsch       PetscCall(VecGetArray(pointVec, &pV));
3086bd041c0cSMatthew G. Knepley       for (ccell = 0; ccell < numCoarseCells; ++ccell) {
3087bd041c0cSMatthew G. Knepley         PetscReal       pVReal[3];
3088c330f8ffSToby Isaac         const PetscReal xi0[3] = {-1., -1., -1.};
3089c330f8ffSToby Isaac 
30909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3091bd041c0cSMatthew G. Knepley         /* Transform points from real space to coarse reference space */
30929566063dSJacob Faibussowitsch         PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc));
3093bd041c0cSMatthew G. Knepley         for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]);
3094c330f8ffSToby Isaac         CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x);
3095bd041c0cSMatthew G. Knepley 
3096bd041c0cSMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
3097bd041c0cSMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
3098bd041c0cSMatthew G. Knepley 
3099bd041c0cSMatthew G. Knepley           /* Evaluate coarse basis on contained point */
31009566063dSJacob Faibussowitsch           PetscCall(PetscFEGetDimension(fe, &cpdim));
31019566063dSJacob Faibussowitsch           PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T));
3102bd041c0cSMatthew G. Knepley           /* Get elemMat entries by multiplying by weight */
3103bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31049566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3105bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3106ef0bb6c7SMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ;
3107bd041c0cSMatthew G. Knepley             }
3108bd041c0cSMatthew G. Knepley             /* Update interpolator */
31099566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
311063a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31119566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3112bd041c0cSMatthew G. Knepley           }
3113bd041c0cSMatthew G. Knepley         } else {
3114bd041c0cSMatthew G. Knepley           cpdim = 1;
3115bd041c0cSMatthew G. Knepley           for (i = 0; i < numFIndices; ++i) {
31169566063dSJacob Faibussowitsch             PetscCall(PetscArrayzero(elemMat, cpdim));
3117bd041c0cSMatthew G. Knepley             for (j = 0; j < cpdim; ++j) {
3118bd041c0cSMatthew G. Knepley               for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ;
3119bd041c0cSMatthew G. Knepley             }
3120bd041c0cSMatthew G. Knepley             /* Update interpolator */
31219566063dSJacob Faibussowitsch             if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat));
312263a3b9bcSJacob Faibussowitsch             PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices));
312363a3b9bcSJacob Faibussowitsch             PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim);
31249566063dSJacob Faibussowitsch             PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES));
3125bd041c0cSMatthew G. Knepley           }
3126bd041c0cSMatthew G. Knepley         }
31279566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL));
3128bd041c0cSMatthew G. Knepley       }
31299566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(pointVec, &pV));
31309566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&coarseCellSF));
31319566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&pointVec));
31329566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL));
3133bd041c0cSMatthew G. Knepley     }
31349566063dSJacob Faibussowitsch     if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T));
3135bd041c0cSMatthew G. Knepley   }
31369566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0, J, invJ));
31379566063dSJacob Faibussowitsch   PetscCall(PetscFree3(v0c, Jc, invJc));
31389566063dSJacob Faibussowitsch   PetscCall(PetscFree(elemMat));
31399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY));
31409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY));
3141bd041c0cSMatthew G. Knepley   PetscFunctionReturn(0);
3142bd041c0cSMatthew G. Knepley }
3143bd041c0cSMatthew G. Knepley 
3144bd041c0cSMatthew G. Knepley /*@
314546fa42a0SMatthew G. Knepley   DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns
314646fa42a0SMatthew G. Knepley 
314746fa42a0SMatthew G. Knepley   Input Parameters:
314846fa42a0SMatthew G. Knepley + dmc  - The coarse mesh
314946fa42a0SMatthew G. Knepley - dmf  - The fine mesh
315046fa42a0SMatthew G. Knepley - user - The user context
315146fa42a0SMatthew G. Knepley 
315246fa42a0SMatthew G. Knepley   Output Parameter:
315346fa42a0SMatthew G. Knepley . sc   - The mapping
315446fa42a0SMatthew G. Knepley 
315546fa42a0SMatthew G. Knepley   Level: developer
315646fa42a0SMatthew G. Knepley 
3157db781477SPatrick Sanan .seealso: `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()`
315846fa42a0SMatthew G. Knepley @*/
3159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user)
3160d71ae5a4SJacob Faibussowitsch {
3161e9d4ef1bSMatthew G. Knepley   PetscDS      prob;
31627c927364SMatthew G. Knepley   PetscFE     *feRef;
316397c42addSMatthew G. Knepley   PetscFV     *fvRef;
31647c927364SMatthew G. Knepley   Vec          fv, cv;
31657c927364SMatthew G. Knepley   IS           fis, cis;
31667c927364SMatthew G. Knepley   PetscSection fsection, fglobalSection, csection, cglobalSection;
31677c927364SMatthew G. Knepley   PetscInt    *cmap, *cellCIndices, *cellFIndices, *cindices, *findices;
3168485ad865SMatthew G. Knepley   PetscInt     cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m;
31696f3d3cbcSMatthew G. Knepley   PetscBool   *needAvg;
31707c927364SMatthew G. Knepley 
31717c927364SMatthew G. Knepley   PetscFunctionBegin;
31729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
31739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dmf, &dim));
31749566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmf, &fsection));
31759566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmf, &fglobalSection));
31769566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dmc, &csection));
31779566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dmc, &cglobalSection));
31789566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(fsection, &Nf));
31799566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd));
31809566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dmc, &prob));
31819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg));
31827c927364SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
318397c42addSMatthew G. Knepley     PetscObject  obj;
318497c42addSMatthew G. Knepley     PetscClassId id;
3185aa7890ccSMatthew G. Knepley     PetscInt     fNb = 0, Nc = 0;
31867c927364SMatthew G. Knepley 
31879566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
31889566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
318997c42addSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
319097c42addSMatthew G. Knepley       PetscFE    fe = (PetscFE)obj;
31916f3d3cbcSMatthew G. Knepley       PetscSpace sp;
31929b2fc754SMatthew G. Knepley       PetscInt   maxDegree;
319397c42addSMatthew G. Knepley 
31949566063dSJacob Faibussowitsch       PetscCall(PetscFERefine(fe, &feRef[f]));
31959566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feRef[f], &fNb));
31969566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(fe, &Nc));
31979566063dSJacob Faibussowitsch       PetscCall(PetscFEGetBasisSpace(fe, &sp));
31989566063dSJacob Faibussowitsch       PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree));
31999b2fc754SMatthew G. Knepley       if (!maxDegree) needAvg[f] = PETSC_TRUE;
320097c42addSMatthew G. Knepley     } else if (id == PETSCFV_CLASSID) {
320197c42addSMatthew G. Knepley       PetscFV        fv = (PetscFV)obj;
320297c42addSMatthew G. Knepley       PetscDualSpace Q;
320397c42addSMatthew G. Knepley 
32049566063dSJacob Faibussowitsch       PetscCall(PetscFVRefine(fv, &fvRef[f]));
32059566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[f], &Q));
32069566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(Q, &fNb));
32079566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &Nc));
32086f3d3cbcSMatthew G. Knepley       needAvg[f] = PETSC_TRUE;
320997c42addSMatthew G. Knepley     }
3210d172c84bSMatthew G. Knepley     fTotDim += fNb;
32117c927364SMatthew G. Knepley   }
32129566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &cTotDim));
32139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cTotDim, &cmap));
32147c927364SMatthew G. Knepley   for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) {
32157c927364SMatthew G. Knepley     PetscFE        feC;
321697c42addSMatthew G. Knepley     PetscFV        fvC;
32177c927364SMatthew G. Knepley     PetscDualSpace QF, QC;
3218d172c84bSMatthew G. Knepley     PetscInt       order = -1, NcF, NcC, fpdim, cpdim;
32197c927364SMatthew G. Knepley 
322097c42addSMatthew G. Knepley     if (feRef[field]) {
32219566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC));
32229566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feC, &NcC));
32239566063dSJacob Faibussowitsch       PetscCall(PetscFEGetNumComponents(feRef[field], &NcF));
32249566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feRef[field], &QF));
32259566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetOrder(QF, &order));
32269566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32279566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDualSpace(feC, &QC));
32289566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
322997c42addSMatthew G. Knepley     } else {
32309566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC));
32319566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvC, &NcC));
32329566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF));
32339566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvRef[field], &QF));
32349566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QF, &fpdim));
32359566063dSJacob Faibussowitsch       PetscCall(PetscFVGetDualSpace(fvC, &QC));
32369566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetDimension(QC, &cpdim));
323797c42addSMatthew G. Knepley     }
323863a3b9bcSJacob Faibussowitsch     PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC);
32397c927364SMatthew G. Knepley     for (c = 0; c < cpdim; ++c) {
32407c927364SMatthew G. Knepley       PetscQuadrature  cfunc;
3241d172c84bSMatthew G. Knepley       const PetscReal *cqpoints, *cqweights;
3242d172c84bSMatthew G. Knepley       PetscInt         NqcC, NpC;
324397c42addSMatthew G. Knepley       PetscBool        found = PETSC_FALSE;
32447c927364SMatthew G. Knepley 
32459566063dSJacob Faibussowitsch       PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc));
32469566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights));
324763a3b9bcSJacob Faibussowitsch       PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC);
32481dca8a05SBarry Smith       PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments");
32497c927364SMatthew G. Knepley       for (f = 0; f < fpdim; ++f) {
32507c927364SMatthew G. Knepley         PetscQuadrature  ffunc;
3251d172c84bSMatthew G. Knepley         const PetscReal *fqpoints, *fqweights;
32527c927364SMatthew G. Knepley         PetscReal        sum = 0.0;
3253d172c84bSMatthew G. Knepley         PetscInt         NqcF, NpF;
32547c927364SMatthew G. Knepley 
32559566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc));
32569566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights));
325763a3b9bcSJacob Faibussowitsch         PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF);
32587c927364SMatthew G. Knepley         if (NpC != NpF) continue;
32597c927364SMatthew G. Knepley         for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]);
32607c927364SMatthew G. Knepley         if (sum > 1.0e-9) continue;
3261d172c84bSMatthew G. Knepley         for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]);
3262d172c84bSMatthew G. Knepley         if (sum < 1.0e-9) continue;
3263d172c84bSMatthew G. Knepley         cmap[offsetC + c] = offsetF + f;
326497c42addSMatthew G. Knepley         found             = PETSC_TRUE;
32657c927364SMatthew G. Knepley         break;
32667c927364SMatthew G. Knepley       }
326797c42addSMatthew G. Knepley       if (!found) {
326897c42addSMatthew G. Knepley         /* TODO We really want the average here, but some asshole put VecScatter in the interface */
3269d172c84bSMatthew G. Knepley         if (fvRef[field] || (feRef[field] && order == 0)) {
3270d172c84bSMatthew G. Knepley           cmap[offsetC + c] = offsetF + 0;
327197c42addSMatthew G. Knepley         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection");
327297c42addSMatthew G. Knepley       }
32737c927364SMatthew G. Knepley     }
3274d172c84bSMatthew G. Knepley     offsetC += cpdim;
3275d172c84bSMatthew G. Knepley     offsetF += fpdim;
32767c927364SMatthew G. Knepley   }
32779371c9d4SSatish Balay   for (f = 0; f < Nf; ++f) {
32789371c9d4SSatish Balay     PetscCall(PetscFEDestroy(&feRef[f]));
32799371c9d4SSatish Balay     PetscCall(PetscFVDestroy(&fvRef[f]));
32809371c9d4SSatish Balay   }
32819566063dSJacob Faibussowitsch   PetscCall(PetscFree3(feRef, fvRef, needAvg));
32827c927364SMatthew G. Knepley 
32839566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmf, &fv));
32849566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalVector(dmc, &cv));
32859566063dSJacob Faibussowitsch   PetscCall(VecGetOwnershipRange(cv, &startC, &endC));
32869566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m));
32879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices));
32889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &cindices));
32899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &findices));
32907c927364SMatthew G. Knepley   for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1;
32917c927364SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
32929566063dSJacob Faibussowitsch     PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices));
32937c927364SMatthew G. Knepley     for (d = 0; d < cTotDim; ++d) {
32940bd915a7SMatthew G. Knepley       if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue;
329563a3b9bcSJacob Faibussowitsch       PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]);
32967c927364SMatthew G. Knepley       cindices[cellCIndices[d] - startC] = cellCIndices[d];
32977c927364SMatthew G. Knepley       findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]];
32987c927364SMatthew G. Knepley     }
32997c927364SMatthew G. Knepley   }
33009566063dSJacob Faibussowitsch   PetscCall(PetscFree(cmap));
33019566063dSJacob Faibussowitsch   PetscCall(PetscFree2(cellCIndices, cellFIndices));
33027c927364SMatthew G. Knepley 
33039566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis));
33049566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis));
33059566063dSJacob Faibussowitsch   PetscCall(VecScatterCreate(cv, cis, fv, fis, sc));
33069566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cis));
33079566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&fis));
33089566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmf, &fv));
33099566063dSJacob Faibussowitsch   PetscCall(DMRestoreGlobalVector(dmc, &cv));
33109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0));
3311cb1e1211SMatthew G Knepley   PetscFunctionReturn(0);
3312cb1e1211SMatthew G Knepley }
3313a1cf66bbSMatthew G. Knepley 
33142f856554SMatthew G. Knepley /*@C
33152f856554SMatthew G. Knepley   DMPlexGetCellFields - Retrieve the field values values for a chunk of cells
33162f856554SMatthew G. Knepley 
33172f856554SMatthew G. Knepley   Input Parameters:
33182f856554SMatthew G. Knepley + dm     - The DM
33192f856554SMatthew G. Knepley . cellIS - The cells to include
33202f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
33212f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
33222f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
33232f856554SMatthew G. Knepley 
33242f856554SMatthew G. Knepley   Output Parameters:
33252f856554SMatthew G. Knepley + u   - The field coefficients
33262f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
33272f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
33282f856554SMatthew G. Knepley 
33292f856554SMatthew G. Knepley   Level: developer
33302f856554SMatthew G. Knepley 
3331db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()`
33322f856554SMatthew G. Knepley @*/
3333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3334d71ae5a4SJacob Faibussowitsch {
33352f856554SMatthew G. Knepley   DM              plex, plexA = NULL;
3336a6e0b375SMatthew G. Knepley   DMEnclosureType encAux;
33372f856554SMatthew G. Knepley   PetscSection    section, sectionAux;
33382f856554SMatthew G. Knepley   PetscDS         prob;
33392f856554SMatthew G. Knepley   const PetscInt *cells;
33402f856554SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, totDim, totDimAux, c;
33412f856554SMatthew G. Knepley 
33422f856554SMatthew G. Knepley   PetscFunctionBegin;
33432f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3344064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(locX, VEC_CLASSID, 3);
3345ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4);
3346ad540459SPierre Jolivet   if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5);
3347064a246eSJacob Faibussowitsch   PetscValidPointer(u, 6);
3348064a246eSJacob Faibussowitsch   PetscValidPointer(u_t, 7);
3349064a246eSJacob Faibussowitsch   PetscValidPointer(a, 8);
33509566063dSJacob Faibussowitsch   PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE));
33519566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
33529566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
33539566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
33549566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
33552f856554SMatthew G. Knepley   if (locA) {
33562f856554SMatthew G. Knepley     DM      dmAux;
33572f856554SMatthew G. Knepley     PetscDS probAux;
33582f856554SMatthew G. Knepley 
33599566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
33609566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
33619566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE));
33629566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
33639566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
33649566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
33652f856554SMatthew G. Knepley   }
33662f856554SMatthew G. Knepley   numCells = cEnd - cStart;
33679566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u));
33689371c9d4SSatish Balay   if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t));
3369ad540459SPierre Jolivet   else *u_t = NULL;
33709371c9d4SSatish Balay   if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a));
3371ad540459SPierre Jolivet   else *a = NULL;
33722f856554SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
33732f856554SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
33742f856554SMatthew G. Knepley     const PetscInt cind = c - cStart;
33752f856554SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a;
33762f856554SMatthew G. Knepley     PetscInt       i;
33772f856554SMatthew G. Knepley 
33789566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x));
33792f856554SMatthew G. Knepley     for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i];
33809566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x));
33812f856554SMatthew G. Knepley     if (locX_t) {
33829566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t));
33832f856554SMatthew G. Knepley       for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i];
33849566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t));
33852f856554SMatthew G. Knepley     }
33862f856554SMatthew G. Knepley     if (locA) {
33872f856554SMatthew G. Knepley       PetscInt subcell;
33889566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell));
33899566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x));
33902f856554SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i];
33919566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x));
33922f856554SMatthew G. Knepley     }
33932f856554SMatthew G. Knepley   }
33949566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
33959566063dSJacob Faibussowitsch   if (locA) PetscCall(DMDestroy(&plexA));
33969566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
33972f856554SMatthew G. Knepley   PetscFunctionReturn(0);
33982f856554SMatthew G. Knepley }
33992f856554SMatthew G. Knepley 
34002f856554SMatthew G. Knepley /*@C
34012f856554SMatthew G. Knepley   DMPlexRestoreCellFields - Restore the field values values for a chunk of cells
34022f856554SMatthew G. Knepley 
34032f856554SMatthew G. Knepley   Input Parameters:
34042f856554SMatthew G. Knepley + dm     - The DM
34052f856554SMatthew G. Knepley . cellIS - The cells to include
34062f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
34072f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
34082f856554SMatthew G. Knepley - locA   - A local vector with auxiliary fields, or NULL
34092f856554SMatthew G. Knepley 
34102f856554SMatthew G. Knepley   Output Parameters:
34112f856554SMatthew G. Knepley + u   - The field coefficients
34122f856554SMatthew G. Knepley . u_t - The fields derivative coefficients
34132f856554SMatthew G. Knepley - a   - The auxiliary field coefficients
34142f856554SMatthew G. Knepley 
34152f856554SMatthew G. Knepley   Level: developer
34162f856554SMatthew G. Knepley 
3417db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()`
34182f856554SMatthew G. Knepley @*/
3419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a)
3420d71ae5a4SJacob Faibussowitsch {
34212f856554SMatthew G. Knepley   PetscFunctionBegin;
34229566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u));
34239566063dSJacob Faibussowitsch   if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t));
34249566063dSJacob Faibussowitsch   if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a));
34252f856554SMatthew G. Knepley   PetscFunctionReturn(0);
34262f856554SMatthew G. Knepley }
34272f856554SMatthew G. Knepley 
3428faff4f7fSMatthew G. Knepley /*
3429faff4f7fSMatthew G. Knepley   Get the auxiliary field vectors for the negative side (s = 0) and positive side (s = 1) of the interfaace
3430faff4f7fSMatthew G. Knepley */
3431d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridAuxFields(DM dm, DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[])
3432d71ae5a4SJacob Faibussowitsch {
343304c51a94SMatthew G. Knepley   DM              plexA[2];
3434148442b3SMatthew G. Knepley   DMEnclosureType encAux[2];
343504c51a94SMatthew G. Knepley   PetscSection    sectionAux[2];
34366528b96dSMatthew G. Knepley   const PetscInt *cells;
3437148442b3SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells, c, s, totDimAux[2];
34386528b96dSMatthew G. Knepley 
34396528b96dSMatthew G. Knepley   PetscFunctionBegin;
3440148442b3SMatthew G. Knepley   PetscValidPointer(locA, 5);
344104c51a94SMatthew G. Knepley   if (!locA[0] || !locA[1]) PetscFunctionReturn(0);
3442148442b3SMatthew G. Knepley   PetscValidPointer(dmAux, 2);
3443148442b3SMatthew G. Knepley   PetscValidPointer(dsAux, 3);
3444148442b3SMatthew G. Knepley   PetscValidPointer(a, 6);
34459566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
34466528b96dSMatthew G. Knepley   numCells = cEnd - cStart;
3447148442b3SMatthew G. Knepley   for (s = 0; s < 2; ++s) {
3448148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(dmAux[s], DM_CLASSID, 2);
3449148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(dsAux[s], PETSCDS_CLASSID, 3);
3450148442b3SMatthew G. Knepley     PetscValidHeaderSpecific(locA[s], VEC_CLASSID, 5);
34519566063dSJacob Faibussowitsch     PetscCall(DMPlexConvertPlex(dmAux[s], &plexA[s], PETSC_FALSE));
34529566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux[s], dm, &encAux[s]));
34539566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux[s], &sectionAux[s]));
34549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[s], &totDimAux[s]));
34559566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dmAux[s], numCells * totDimAux[s], MPIU_SCALAR, &a[s]));
345604c51a94SMatthew G. Knepley   }
3457148442b3SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
34586528b96dSMatthew G. Knepley     const PetscInt  cell = cells ? cells[c] : c;
34596528b96dSMatthew G. Knepley     const PetscInt  cind = c - cStart;
34606528b96dSMatthew G. Knepley     const PetscInt *cone, *ornt;
34616528b96dSMatthew G. Knepley 
34629566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
34639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
3464148442b3SMatthew G. Knepley     for (s = 0; s < 2; ++s) {
34655fedec97SMatthew G. Knepley       const PetscInt *support;
3466148442b3SMatthew G. Knepley       PetscScalar    *x = NULL, *al = a[s];
3467148442b3SMatthew G. Knepley       const PetscInt  tdA = totDimAux[s];
34685fedec97SMatthew G. Knepley       PetscInt        ssize, scell;
3469148442b3SMatthew G. Knepley       PetscInt        subface, Na, i;
34706528b96dSMatthew G. Knepley 
34719566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, cone[s], &support));
34729566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, cone[s], &ssize));
347363a3b9bcSJacob Faibussowitsch       PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[s], cell, ssize);
34745fedec97SMatthew G. Knepley       if (support[0] == cell) scell = support[1];
34755fedec97SMatthew G. Knepley       else if (support[1] == cell) scell = support[0];
347663a3b9bcSJacob Faibussowitsch       else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[s], cell);
34775fedec97SMatthew G. Knepley 
34789566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(plexA[s], dm, encAux[s], scell, &subface));
34799566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x));
34806528b96dSMatthew G. Knepley       for (i = 0; i < Na; ++i) al[cind * tdA + i] = x[i];
34819566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x));
34826528b96dSMatthew G. Knepley     }
34836528b96dSMatthew G. Knepley   }
34849566063dSJacob Faibussowitsch   for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexA[s]));
34859566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
34866528b96dSMatthew G. Knepley   PetscFunctionReturn(0);
34876528b96dSMatthew G. Knepley }
34886528b96dSMatthew G. Knepley 
3489d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreHybridAuxFields(DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[])
3490d71ae5a4SJacob Faibussowitsch {
34916528b96dSMatthew G. Knepley   PetscFunctionBegin;
349204c51a94SMatthew G. Knepley   if (!locA[0] || !locA[1]) PetscFunctionReturn(0);
34939566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dmAux[0], 0, MPIU_SCALAR, &a[0]));
34949566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dmAux[1], 0, MPIU_SCALAR, &a[1]));
34956528b96dSMatthew G. Knepley   PetscFunctionReturn(0);
34966528b96dSMatthew G. Knepley }
34976528b96dSMatthew G. Knepley 
34982f856554SMatthew G. Knepley /*@C
34992f856554SMatthew G. Knepley   DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces
35002f856554SMatthew G. Knepley 
35012f856554SMatthew G. Knepley   Input Parameters:
35022f856554SMatthew G. Knepley + dm     - The DM
35032f856554SMatthew G. Knepley . fStart - The first face to include
35042f856554SMatthew G. Knepley . fEnd   - The first face to exclude
35052f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
35062f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
35072f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
35082f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
35092f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
35102f856554SMatthew G. Knepley 
35112f856554SMatthew G. Knepley   Output Parameters:
35122f856554SMatthew G. Knepley + Nface - The number of faces with field values
35132f856554SMatthew G. Knepley . uL - The field values at the left side of the face
35142f856554SMatthew G. Knepley - uR - The field values at the right side of the face
35152f856554SMatthew G. Knepley 
35162f856554SMatthew G. Knepley   Level: developer
35172f856554SMatthew G. Knepley 
3518db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()`
35192f856554SMatthew G. Knepley @*/
3520d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3521d71ae5a4SJacob Faibussowitsch {
35222f856554SMatthew G. Knepley   DM                 dmFace, dmCell, dmGrad = NULL;
35232f856554SMatthew G. Knepley   PetscSection       section;
35242f856554SMatthew G. Knepley   PetscDS            prob;
35252f856554SMatthew G. Knepley   DMLabel            ghostLabel;
35262f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom, *x, *lgrad;
35272f856554SMatthew G. Knepley   PetscBool         *isFE;
35282f856554SMatthew G. Knepley   PetscInt           dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face;
35292f856554SMatthew G. Knepley 
35302f856554SMatthew G. Knepley   PetscFunctionBegin;
35312f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35322f856554SMatthew G. Knepley   PetscValidHeaderSpecific(locX, VEC_CLASSID, 4);
3533ad540459SPierre Jolivet   if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);
35342f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6);
35352f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7);
3536ad540459SPierre Jolivet   if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);
3537064a246eSJacob Faibussowitsch   PetscValidPointer(uL, 10);
3538064a246eSJacob Faibussowitsch   PetscValidPointer(uR, 11);
35399566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
35409566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
35419566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
35429566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
35439566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalComponents(prob, &Nc));
35449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &isFE));
35452f856554SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
35462f856554SMatthew G. Knepley     PetscObject  obj;
35472f856554SMatthew G. Knepley     PetscClassId id;
35482f856554SMatthew G. Knepley 
35499566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
35509566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
35519371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
35529371c9d4SSatish Balay       isFE[f] = PETSC_TRUE;
35539371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
35549371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
35559371c9d4SSatish Balay     } else {
35569371c9d4SSatish Balay       isFE[f] = PETSC_FALSE;
35579371c9d4SSatish Balay     }
35582f856554SMatthew G. Knepley   }
35599566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
35609566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(locX, &x));
35619566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
35629566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
35639566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
35649566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
35652f856554SMatthew G. Knepley   if (locGrad) {
35669566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locGrad, &dmGrad));
35679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(locGrad, &lgrad));
35682f856554SMatthew G. Knepley   }
35699566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL));
35709566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR));
35712f856554SMatthew G. Knepley   /* Right now just eat the extra work for FE (could make a cell loop) */
35722f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
35732f856554SMatthew G. Knepley     const PetscInt  *cells;
35742f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
35752f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
35762f856554SMatthew G. Knepley     PetscScalar     *xL, *xR, *gL, *gR;
35772f856554SMatthew G. Knepley     PetscScalar     *uLl = *uL, *uRl = *uR;
35782f856554SMatthew G. Knepley     PetscInt         ghost, nsupp, nchild;
35792f856554SMatthew G. Knepley 
35809566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
35819566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
35829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
35832f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
35849566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
35859566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
35869566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
35879566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
35882f856554SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
35892f856554SMatthew G. Knepley       PetscInt off;
35902f856554SMatthew G. Knepley 
35919566063dSJacob Faibussowitsch       PetscCall(PetscDSGetComponentOffset(prob, f, &off));
35922f856554SMatthew G. Knepley       if (isFE[f]) {
35932f856554SMatthew G. Knepley         const PetscInt *cone;
35942f856554SMatthew G. Knepley         PetscInt        comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d;
35952f856554SMatthew G. Knepley 
35962f856554SMatthew G. Knepley         xL = xR = NULL;
35979566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
35989566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
35999566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
36009566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[0], &cone));
36019566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL));
36029371c9d4SSatish Balay         for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL)
36039371c9d4SSatish Balay           if (cone[faceLocL] == face) break;
36049566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, cells[1], &cone));
36059566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR));
36069371c9d4SSatish Balay         for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR)
36079371c9d4SSatish Balay           if (cone[faceLocR] == face) break;
36081dca8a05SBarry Smith         PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]);
36092f856554SMatthew G. Knepley         /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */
36102f856554SMatthew G. Knepley         /* TODO: this is a hack that might not be right for nonconforming */
36112f856554SMatthew G. Knepley         if (faceLocL < coneSizeL) {
36129566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off]));
36139566063dSJacob Faibussowitsch           if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
36142f856554SMatthew G. Knepley           else {
36159371c9d4SSatish Balay             for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d];
36169371c9d4SSatish Balay           }
36179371c9d4SSatish Balay         } else {
36189566063dSJacob Faibussowitsch           PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off]));
36199566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldComponents(section, f, &comp));
36202f856554SMatthew G. Knepley           for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d];
36212f856554SMatthew G. Knepley         }
36229566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL));
36239566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR));
36242f856554SMatthew G. Knepley       } else {
36252f856554SMatthew G. Knepley         PetscFV  fv;
36262f856554SMatthew G. Knepley         PetscInt numComp, c;
36272f856554SMatthew G. Knepley 
36289566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv));
36299566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &numComp));
36309566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL));
36319566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR));
36322f856554SMatthew G. Knepley         if (dmGrad) {
36332f856554SMatthew G. Knepley           PetscReal dxL[3], dxR[3];
36342f856554SMatthew G. Knepley 
36359566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL));
36369566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR));
36372f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL);
36382f856554SMatthew G. Knepley           DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR);
36392f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
36402f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL);
36412f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR);
36422f856554SMatthew G. Knepley           }
36432f856554SMatthew G. Knepley         } else {
36442f856554SMatthew G. Knepley           for (c = 0; c < numComp; ++c) {
36452f856554SMatthew G. Knepley             uLl[iface * Nc + off + c] = xL[c];
36462f856554SMatthew G. Knepley             uRl[iface * Nc + off + c] = xR[c];
36472f856554SMatthew G. Knepley           }
36482f856554SMatthew G. Knepley         }
36492f856554SMatthew G. Knepley       }
36502f856554SMatthew G. Knepley     }
36512f856554SMatthew G. Knepley     ++iface;
36522f856554SMatthew G. Knepley   }
36532f856554SMatthew G. Knepley   *Nface = iface;
36549566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(locX, &x));
36559566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
36569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
365748a46eb9SPierre Jolivet   if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad));
36589566063dSJacob Faibussowitsch   PetscCall(PetscFree(isFE));
36592f856554SMatthew G. Knepley   PetscFunctionReturn(0);
36602f856554SMatthew G. Knepley }
36612f856554SMatthew G. Knepley 
36622f856554SMatthew G. Knepley /*@C
36632f856554SMatthew G. Knepley   DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces
36642f856554SMatthew G. Knepley 
36652f856554SMatthew G. Knepley   Input Parameters:
36662f856554SMatthew G. Knepley + dm     - The DM
36672f856554SMatthew G. Knepley . fStart - The first face to include
36682f856554SMatthew G. Knepley . fEnd   - The first face to exclude
36692f856554SMatthew G. Knepley . locX   - A local vector with the solution fields
36702f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL
36712f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
36722f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry
36732f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL
36742f856554SMatthew G. Knepley 
36752f856554SMatthew G. Knepley   Output Parameters:
36762f856554SMatthew G. Knepley + Nface - The number of faces with field values
36772f856554SMatthew G. Knepley . uL - The field values at the left side of the face
36782f856554SMatthew G. Knepley - uR - The field values at the right side of the face
36792f856554SMatthew G. Knepley 
36802f856554SMatthew G. Knepley   Level: developer
36812f856554SMatthew G. Knepley 
3682db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()`
36832f856554SMatthew G. Knepley @*/
3684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR)
3685d71ae5a4SJacob Faibussowitsch {
36862f856554SMatthew G. Knepley   PetscFunctionBegin;
36879566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL));
36889566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR));
36892f856554SMatthew G. Knepley   PetscFunctionReturn(0);
36902f856554SMatthew G. Knepley }
36912f856554SMatthew G. Knepley 
36922f856554SMatthew G. Knepley /*@C
36932f856554SMatthew G. Knepley   DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces
36942f856554SMatthew G. Knepley 
36952f856554SMatthew G. Knepley   Input Parameters:
36962f856554SMatthew G. Knepley + dm     - The DM
36972f856554SMatthew G. Knepley . fStart - The first face to include
36982f856554SMatthew G. Knepley . fEnd   - The first face to exclude
36992f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
37002f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
37012f856554SMatthew G. Knepley 
37022f856554SMatthew G. Knepley   Output Parameters:
37032f856554SMatthew G. Knepley + Nface - The number of faces with field values
37042f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
37052f856554SMatthew G. Knepley - vol   - The cell volume
37062f856554SMatthew G. Knepley 
37072f856554SMatthew G. Knepley   Level: developer
37082f856554SMatthew G. Knepley 
3709db781477SPatrick Sanan .seealso: `DMPlexGetCellFields()`
37102f856554SMatthew G. Knepley @*/
3711d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3712d71ae5a4SJacob Faibussowitsch {
37132f856554SMatthew G. Knepley   DM                 dmFace, dmCell;
37142f856554SMatthew G. Knepley   DMLabel            ghostLabel;
37152f856554SMatthew G. Knepley   const PetscScalar *facegeom, *cellgeom;
37162f856554SMatthew G. Knepley   PetscInt           dim, numFaces = fEnd - fStart, iface, face;
37172f856554SMatthew G. Knepley 
37182f856554SMatthew G. Knepley   PetscFunctionBegin;
37192f856554SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37202f856554SMatthew G. Knepley   PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4);
37212f856554SMatthew G. Knepley   PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5);
3722064a246eSJacob Faibussowitsch   PetscValidPointer(fgeom, 7);
3723064a246eSJacob Faibussowitsch   PetscValidPointer(vol, 8);
37249566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
37259566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
37269566063dSJacob Faibussowitsch   PetscCall(VecGetDM(faceGeometry, &dmFace));
37279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(faceGeometry, &facegeom));
37289566063dSJacob Faibussowitsch   PetscCall(VecGetDM(cellGeometry, &dmCell));
37299566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(cellGeometry, &cellgeom));
37309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numFaces, fgeom));
37319566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol));
37322f856554SMatthew G. Knepley   for (face = fStart, iface = 0; face < fEnd; ++face) {
37332f856554SMatthew G. Knepley     const PetscInt  *cells;
37342f856554SMatthew G. Knepley     PetscFVFaceGeom *fg;
37352f856554SMatthew G. Knepley     PetscFVCellGeom *cgL, *cgR;
37362f856554SMatthew G. Knepley     PetscFVFaceGeom *fgeoml = *fgeom;
37372f856554SMatthew G. Knepley     PetscReal       *voll   = *vol;
37382f856554SMatthew G. Knepley     PetscInt         ghost, d, nchild, nsupp;
37392f856554SMatthew G. Knepley 
37409566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
37419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
37429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
37432f856554SMatthew G. Knepley     if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
37449566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg));
37459566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, face, &cells));
37469566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL));
37479566063dSJacob Faibussowitsch     PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR));
37482f856554SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
37492f856554SMatthew G. Knepley       fgeoml[iface].centroid[d] = fg->centroid[d];
37502f856554SMatthew G. Knepley       fgeoml[iface].normal[d]   = fg->normal[d];
37512f856554SMatthew G. Knepley     }
37522f856554SMatthew G. Knepley     voll[iface * 2 + 0] = cgL->volume;
37532f856554SMatthew G. Knepley     voll[iface * 2 + 1] = cgR->volume;
37542f856554SMatthew G. Knepley     ++iface;
37552f856554SMatthew G. Knepley   }
37562f856554SMatthew G. Knepley   *Nface = iface;
37579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom));
37589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom));
37592f856554SMatthew G. Knepley   PetscFunctionReturn(0);
37602f856554SMatthew G. Knepley }
37612f856554SMatthew G. Knepley 
37622f856554SMatthew G. Knepley /*@C
37632f856554SMatthew G. Knepley   DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces
37642f856554SMatthew G. Knepley 
37652f856554SMatthew G. Knepley   Input Parameters:
37662f856554SMatthew G. Knepley + dm     - The DM
37672f856554SMatthew G. Knepley . fStart - The first face to include
37682f856554SMatthew G. Knepley . fEnd   - The first face to exclude
37692f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry
37702f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry
37712f856554SMatthew G. Knepley 
37722f856554SMatthew G. Knepley   Output Parameters:
37732f856554SMatthew G. Knepley + Nface - The number of faces with field values
37742f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal
37752f856554SMatthew G. Knepley - vol   - The cell volume
37762f856554SMatthew G. Knepley 
37772f856554SMatthew G. Knepley   Level: developer
37782f856554SMatthew G. Knepley 
3779db781477SPatrick Sanan .seealso: `DMPlexGetFaceFields()`
37802f856554SMatthew G. Knepley @*/
3781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol)
3782d71ae5a4SJacob Faibussowitsch {
37832f856554SMatthew G. Knepley   PetscFunctionBegin;
37849566063dSJacob Faibussowitsch   PetscCall(PetscFree(*fgeom));
37859566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol));
37862f856554SMatthew G. Knepley   PetscFunctionReturn(0);
37872f856554SMatthew G. Knepley }
37882f856554SMatthew G. Knepley 
3789d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3790d71ae5a4SJacob Faibussowitsch {
3791a1cf66bbSMatthew G. Knepley   char           composeStr[33] = {0};
3792a1cf66bbSMatthew G. Knepley   PetscObjectId  id;
3793a1cf66bbSMatthew G. Knepley   PetscContainer container;
3794a1cf66bbSMatthew G. Knepley 
3795a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
37969566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetId((PetscObject)quad, &id));
379763a3b9bcSJacob Faibussowitsch   PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id));
37989566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container));
3799a1cf66bbSMatthew G. Knepley   if (container) {
38009566063dSJacob Faibussowitsch     PetscCall(PetscContainerGetPointer(container, (void **)geom));
3801a1cf66bbSMatthew G. Knepley   } else {
38029566063dSJacob Faibussowitsch     PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom));
38039566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
38049566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(container, (void *)*geom));
38059566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom));
38069566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container));
38079566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&container));
3808a1cf66bbSMatthew G. Knepley   }
3809a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
3810a1cf66bbSMatthew G. Knepley }
3811a1cf66bbSMatthew G. Knepley 
3812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom)
3813d71ae5a4SJacob Faibussowitsch {
3814a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
3815a1cf66bbSMatthew G. Knepley   *geom = NULL;
3816a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
3817a1cf66bbSMatthew G. Knepley }
3818a1cf66bbSMatthew G. Knepley 
3819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user)
3820d71ae5a4SJacob Faibussowitsch {
382192d50984SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
382292d50984SMatthew G. Knepley   const char     *name       = "Residual";
382392d50984SMatthew G. Knepley   DM              dmAux      = NULL;
382492d50984SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
382592d50984SMatthew G. Knepley   PetscDS         prob       = NULL;
382692d50984SMatthew G. Knepley   PetscDS         probAux    = NULL;
382792d50984SMatthew G. Knepley   PetscBool       useFEM     = PETSC_FALSE;
382892d50984SMatthew G. Knepley   PetscBool       isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
382992d50984SMatthew G. Knepley   DMField         coordField = NULL;
3830c0006e53SPatrick Farrell   Vec             locA;
3831c0006e53SPatrick Farrell   PetscScalar    *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL;
383292d50984SMatthew G. Knepley   IS              chunkIS;
383392d50984SMatthew G. Knepley   const PetscInt *cells;
383492d50984SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
3835364207b6SKarl Rupp   PetscInt        Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd;
383692d50984SMatthew G. Knepley   PetscInt        maxDegree = PETSC_MAX_INT;
383706ad1575SMatthew G. Knepley   PetscFormKey    key;
383892d50984SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
383992d50984SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
384092d50984SMatthew G. Knepley 
384192d50984SMatthew G. Knepley   PetscFunctionBegin;
38429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
384392d50984SMatthew G. Knepley   /* FEM+FVM */
384492d50984SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
38459566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
38469566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
38479566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
38489566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
38499566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA));
385092d50984SMatthew G. Knepley   if (locA) {
38519566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
38529566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
38539566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
385492d50984SMatthew G. Knepley   }
385592d50984SMatthew G. Knepley   /* 2: Get geometric data */
385692d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
385792d50984SMatthew G. Knepley     PetscObject  obj;
385892d50984SMatthew G. Knepley     PetscClassId id;
385992d50984SMatthew G. Knepley     PetscBool    fimp;
386092d50984SMatthew G. Knepley 
38619566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(prob, f, &fimp));
386292d50984SMatthew G. Knepley     if (isImplicit != fimp) continue;
38639566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, f, &obj));
38649566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
3865ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
38665f80ce2aSJacob Faibussowitsch     PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented");
386792d50984SMatthew G. Knepley   }
386892d50984SMatthew G. Knepley   if (useFEM) {
38699566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
38709566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
387192d50984SMatthew G. Knepley     if (maxDegree <= 1) {
38729566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
387348a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
387492d50984SMatthew G. Knepley     } else {
38759566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
387692d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
387792d50984SMatthew G. Knepley         PetscObject  obj;
387892d50984SMatthew G. Knepley         PetscClassId id;
387992d50984SMatthew G. Knepley         PetscBool    fimp;
388092d50984SMatthew G. Knepley 
38819566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(prob, f, &fimp));
388292d50984SMatthew G. Knepley         if (isImplicit != fimp) continue;
38839566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
38849566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
388592d50984SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
388692d50984SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
388792d50984SMatthew G. Knepley 
38889566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
38899566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
38909566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
389192d50984SMatthew G. Knepley         }
389292d50984SMatthew G. Knepley       }
389392d50984SMatthew G. Knepley     }
389492d50984SMatthew G. Knepley   }
389592d50984SMatthew G. Knepley   /* Loop over chunks */
38969566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
38979566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
38989566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
389992d50984SMatthew G. Knepley   numCells      = cEnd - cStart;
390092d50984SMatthew G. Knepley   numChunks     = 1;
390192d50984SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
390292d50984SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
39036528b96dSMatthew G. Knepley   key.label     = NULL;
39046528b96dSMatthew G. Knepley   key.value     = 0;
390506ad1575SMatthew G. Knepley   key.part      = 0;
390692d50984SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
3907c0006e53SPatrick Farrell     PetscScalar     *elemVec, *fluxL = NULL, *fluxR = NULL;
3908c0006e53SPatrick Farrell     PetscReal       *vol   = NULL;
3909c0006e53SPatrick Farrell     PetscFVFaceGeom *fgeom = NULL;
391092d50984SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
3911c0006e53SPatrick Farrell     PetscInt         numFaces = 0;
391292d50984SMatthew G. Knepley 
391392d50984SMatthew G. Knepley     /* Extract field coefficients */
391492d50984SMatthew G. Knepley     if (useFEM) {
39159566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
39169566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
39179566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
39189566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
391992d50984SMatthew G. Knepley     }
392092d50984SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
392192d50984SMatthew G. Knepley     /* Loop over fields */
392292d50984SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
392392d50984SMatthew G. Knepley       PetscObject  obj;
392492d50984SMatthew G. Knepley       PetscClassId id;
392592d50984SMatthew G. Knepley       PetscBool    fimp;
392692d50984SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
392792d50984SMatthew G. Knepley 
39286528b96dSMatthew G. Knepley       key.field = f;
39299566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(prob, f, &fimp));
393092d50984SMatthew G. Knepley       if (isImplicit != fimp) continue;
39319566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, f, &obj));
39329566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
393392d50984SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
393492d50984SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
393592d50984SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
393692d50984SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
393792d50984SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
393892d50984SMatthew G. Knepley         PetscInt        Nq, Nb;
393992d50984SMatthew G. Knepley 
39409566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
39419566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
39429566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
394392d50984SMatthew G. Knepley         blockSize = Nb;
394492d50984SMatthew G. Knepley         batchSize = numBlocks * blockSize;
39459566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
394692d50984SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
394792d50984SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
394892d50984SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
394992d50984SMatthew G. Knepley         offset    = numCells - Nr;
395092d50984SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
395192d50984SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
39529566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
39539566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
39549566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
39559566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
39569566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
395792d50984SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
395892d50984SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
395992d50984SMatthew G. Knepley 
396092d50984SMatthew G. Knepley         Ne = numFaces;
396192d50984SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
396292d50984SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
39639566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
396463a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
396592d50984SMatthew G. Knepley     }
396692d50984SMatthew G. Knepley     /* Loop over domain */
396792d50984SMatthew G. Knepley     if (useFEM) {
396892d50984SMatthew G. Knepley       /* Add elemVec to locX */
396992d50984SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
397092d50984SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
397192d50984SMatthew G. Knepley         const PetscInt cind = c - cStart;
397292d50984SMatthew G. Knepley 
39739566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
397492d50984SMatthew G. Knepley         if (ghostLabel) {
397592d50984SMatthew G. Knepley           PetscInt ghostVal;
397692d50984SMatthew G. Knepley 
39779566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
397892d50984SMatthew G. Knepley           if (ghostVal > 0) continue;
397992d50984SMatthew G. Knepley         }
39809566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
398192d50984SMatthew G. Knepley       }
398292d50984SMatthew G. Knepley     }
398392d50984SMatthew G. Knepley     /* Handle time derivative */
398492d50984SMatthew G. Knepley     if (locX_t) {
398592d50984SMatthew G. Knepley       PetscScalar *x_t, *fa;
398692d50984SMatthew G. Knepley 
39879566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
39889566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
398992d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
399092d50984SMatthew G. Knepley         PetscFV      fv;
399192d50984SMatthew G. Knepley         PetscObject  obj;
399292d50984SMatthew G. Knepley         PetscClassId id;
399392d50984SMatthew G. Knepley         PetscInt     pdim, d;
399492d50984SMatthew G. Knepley 
39959566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, f, &obj));
39969566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
399792d50984SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
399892d50984SMatthew G. Knepley         fv = (PetscFV)obj;
39999566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
400092d50984SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
400192d50984SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
400292d50984SMatthew G. Knepley           PetscScalar   *u_t, *r;
400392d50984SMatthew G. Knepley 
400492d50984SMatthew G. Knepley           if (ghostLabel) {
400592d50984SMatthew G. Knepley             PetscInt ghostVal;
400692d50984SMatthew G. Knepley 
40079566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
400892d50984SMatthew G. Knepley             if (ghostVal > 0) continue;
400992d50984SMatthew G. Knepley           }
40109566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
40119566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
401292d50984SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
401392d50984SMatthew G. Knepley         }
401492d50984SMatthew G. Knepley       }
40159566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
40169566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
401792d50984SMatthew G. Knepley     }
401892d50984SMatthew G. Knepley     if (useFEM) {
40199566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
40209566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
402192d50984SMatthew G. Knepley     }
402292d50984SMatthew G. Knepley   }
40239566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
40249566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
402592d50984SMatthew G. Knepley   /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */
402692d50984SMatthew G. Knepley   if (useFEM) {
402792d50984SMatthew G. Knepley     if (maxDegree <= 1) {
40289566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
40299566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
403092d50984SMatthew G. Knepley     } else {
403192d50984SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
40329566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
40339566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
403492d50984SMatthew G. Knepley       }
40359566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
403692d50984SMatthew G. Knepley     }
403792d50984SMatthew G. Knepley   }
40389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
403992d50984SMatthew G. Knepley   PetscFunctionReturn(0);
404092d50984SMatthew G. Knepley }
404192d50984SMatthew G. Knepley 
4042a1cf66bbSMatthew G. Knepley /*
4043a1cf66bbSMatthew G. Knepley   We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac
4044a1cf66bbSMatthew G. Knepley 
4045a1cf66bbSMatthew G. Knepley   X   - The local solution vector
4046a5b23f4aSJose E. Roman   X_t - The local solution time derivative vector, or NULL
4047a1cf66bbSMatthew G. Knepley */
4048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx)
4049d71ae5a4SJacob Faibussowitsch {
4050a1cf66bbSMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
4051a1cf66bbSMatthew G. Knepley   const char     *name = "Jacobian", *nameP = "JacobianPre";
4052a1cf66bbSMatthew G. Knepley   DM              dmAux = NULL;
4053a1cf66bbSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
4054a1cf66bbSMatthew G. Knepley   PetscSection    sectionAux = NULL;
4055a1cf66bbSMatthew G. Knepley   Vec             A;
4056a1cf66bbSMatthew G. Knepley   DMField         coordField;
4057a1cf66bbSMatthew G. Knepley   PetscFEGeom    *cgeomFEM;
4058a1cf66bbSMatthew G. Knepley   PetscQuadrature qGeom = NULL;
4059a1cf66bbSMatthew G. Knepley   Mat             J = Jac, JP = JacP;
4060a1cf66bbSMatthew G. Knepley   PetscScalar    *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL;
4061e432b41dSStefano Zampini   PetscBool       hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE;
4062a1cf66bbSMatthew G. Knepley   const PetscInt *cells;
406306ad1575SMatthew G. Knepley   PetscFormKey    key;
40649b2fc754SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0;
4065a1cf66bbSMatthew G. Knepley 
4066a1cf66bbSMatthew G. Knepley   PetscFunctionBegin;
40679566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
40689566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
40699566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
40709566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
40719566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A));
40729a2a23afSMatthew G. Knepley   if (A) {
40739566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
40749566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dmAux, &sectionAux));
40759566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
4076a1cf66bbSMatthew G. Knepley   }
4077a1cf66bbSMatthew G. Knepley   /* Get flags */
40789566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
40799566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE));
4080a1cf66bbSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
4081a1cf66bbSMatthew G. Knepley     PetscObject  disc;
4082a1cf66bbSMatthew G. Knepley     PetscClassId id;
40839566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc));
40849566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(disc, &id));
40859371c9d4SSatish Balay     if (id == PETSCFE_CLASSID) {
40869371c9d4SSatish Balay       isFE[fieldI] = PETSC_TRUE;
40879371c9d4SSatish Balay     } else if (id == PETSCFV_CLASSID) {
40889371c9d4SSatish Balay       hasFV        = PETSC_TRUE;
40899371c9d4SSatish Balay       isFE[fieldI] = PETSC_FALSE;
40909371c9d4SSatish Balay     }
4091a1cf66bbSMatthew G. Knepley   }
40929566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
40939566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
40949566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
4095a1cf66bbSMatthew G. Knepley   assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE;
4096a1cf66bbSMatthew G. Knepley   hasDyn      = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
40979566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */
40989566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
40999566063dSJacob Faibussowitsch   if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
4100a1cf66bbSMatthew G. Knepley   /* Compute batch sizes */
4101a1cf66bbSMatthew G. Knepley   if (isFE[0]) {
4102a1cf66bbSMatthew G. Knepley     PetscFE         fe;
4103a1cf66bbSMatthew G. Knepley     PetscQuadrature q;
4104a1cf66bbSMatthew G. Knepley     PetscInt        numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb;
4105a1cf66bbSMatthew G. Knepley 
41069566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
41079566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &q));
41089566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL));
41099566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
41109566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
4111a1cf66bbSMatthew G. Knepley     blockSize = Nb * numQuadPoints;
4112a1cf66bbSMatthew G. Knepley     batchSize = numBlocks * blockSize;
4113a1cf66bbSMatthew G. Knepley     chunkSize = numBatches * batchSize;
4114a1cf66bbSMatthew G. Knepley     numChunks = numCells / chunkSize + numCells % chunkSize;
41159566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
4116a1cf66bbSMatthew G. Knepley   } else {
4117a1cf66bbSMatthew G. Knepley     chunkSize = numCells;
4118a1cf66bbSMatthew G. Knepley     numChunks = 1;
4119a1cf66bbSMatthew G. Knepley   }
4120a1cf66bbSMatthew G. Knepley   /* Get work space */
4121a1cf66bbSMatthew G. Knepley   wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize;
41229566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work));
41239566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(work, wsz));
4124a1cf66bbSMatthew G. Knepley   off      = 0;
4125a1cf66bbSMatthew G. Knepley   u        = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4126a1cf66bbSMatthew G. Knepley   u_t      = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL;
4127a1cf66bbSMatthew G. Knepley   a        = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL;
4128a1cf66bbSMatthew G. Knepley   elemMat  = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4129a1cf66bbSMatthew G. Knepley   elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
4130a1cf66bbSMatthew G. Knepley   elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL;
413163a3b9bcSJacob Faibussowitsch   PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz);
4132a1cf66bbSMatthew G. Knepley   /* Setup geometry */
41339566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
41349566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
41359566063dSJacob Faibussowitsch   if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
4136a1cf66bbSMatthew G. Knepley   if (!qGeom) {
4137a1cf66bbSMatthew G. Knepley     PetscFE fe;
4138a1cf66bbSMatthew G. Knepley 
41399566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe));
41409566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &qGeom));
41419566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)qGeom));
4142a1cf66bbSMatthew G. Knepley   }
41439566063dSJacob Faibussowitsch   PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
4144a1cf66bbSMatthew G. Knepley   /* Compute volume integrals */
41459566063dSJacob Faibussowitsch   if (assembleJac) PetscCall(MatZeroEntries(J));
41469566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(JP));
41476528b96dSMatthew G. Knepley   key.label = NULL;
41486528b96dSMatthew G. Knepley   key.value = 0;
414906ad1575SMatthew G. Knepley   key.part  = 0;
4150a1cf66bbSMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) {
4151a1cf66bbSMatthew G. Knepley     const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell);
4152a1cf66bbSMatthew G. Knepley     PetscInt       c;
4153a1cf66bbSMatthew G. Knepley 
4154a1cf66bbSMatthew G. Knepley     /* Extract values */
4155a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4156a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4157a1cf66bbSMatthew G. Knepley       PetscScalar   *x = NULL, *x_t = NULL;
4158a1cf66bbSMatthew G. Knepley       PetscInt       i;
4159a1cf66bbSMatthew G. Knepley 
4160a1cf66bbSMatthew G. Knepley       if (X) {
41619566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
4162a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i];
41639566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
4164a1cf66bbSMatthew G. Knepley       }
4165a1cf66bbSMatthew G. Knepley       if (X_t) {
41669566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
4167a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i];
41689566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
4169a1cf66bbSMatthew G. Knepley       }
4170a1cf66bbSMatthew G. Knepley       if (dmAux) {
41719566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x));
4172a1cf66bbSMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i];
41739566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x));
4174a1cf66bbSMatthew G. Knepley       }
4175a1cf66bbSMatthew G. Knepley     }
4176a1cf66bbSMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
4177a1cf66bbSMatthew G. Knepley       PetscFE fe;
41789566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
4179a1cf66bbSMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
41806528b96dSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
41819566063dSJacob Faibussowitsch         if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat));
41829566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP));
41839566063dSJacob Faibussowitsch         if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD));
4184a1cf66bbSMatthew G. Knepley       }
4185a1cf66bbSMatthew G. Knepley       /* For finite volume, add the identity */
4186a1cf66bbSMatthew G. Knepley       if (!isFE[fieldI]) {
4187a1cf66bbSMatthew G. Knepley         PetscFV  fv;
4188a1cf66bbSMatthew G. Knepley         PetscInt eOffset = 0, Nc, fc, foff;
4189a1cf66bbSMatthew G. Knepley 
41909566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff));
41919566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
41929566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &Nc));
4193a1cf66bbSMatthew G. Knepley         for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) {
4194a1cf66bbSMatthew G. Knepley           for (fc = 0; fc < Nc; ++fc) {
4195a1cf66bbSMatthew G. Knepley             const PetscInt i = foff + fc;
4196ad540459SPierre Jolivet             if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
4197ad540459SPierre Jolivet             if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0;
4198a1cf66bbSMatthew G. Knepley           }
4199a1cf66bbSMatthew G. Knepley         }
4200a1cf66bbSMatthew G. Knepley       }
4201a1cf66bbSMatthew G. Knepley     }
4202a1cf66bbSMatthew G. Knepley     /*   Add contribution from X_t */
42039371c9d4SSatish Balay     if (hasDyn) {
42049371c9d4SSatish Balay       for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
42059371c9d4SSatish Balay     }
4206a1cf66bbSMatthew G. Knepley     /* Insert values into matrix */
4207a1cf66bbSMatthew G. Knepley     for (c = 0; c < Ncell; ++c) {
4208a1cf66bbSMatthew G. Knepley       const PetscInt cell = cells ? cells[c + offCell] : c + offCell;
4209a1cf66bbSMatthew G. Knepley       if (mesh->printFEM > 1) {
42109566063dSJacob Faibussowitsch         if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim]));
42119566063dSJacob Faibussowitsch         if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim]));
4212a1cf66bbSMatthew G. Knepley       }
42139566063dSJacob Faibussowitsch       if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
42149566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES));
4215a1cf66bbSMatthew G. Knepley     }
4216a1cf66bbSMatthew G. Knepley   }
4217a1cf66bbSMatthew G. Knepley   /* Cleanup */
42189566063dSJacob Faibussowitsch   PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
42199566063dSJacob Faibussowitsch   PetscCall(PetscQuadratureDestroy(&qGeom));
42209566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
42219566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE));
42229566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work));
4223a1cf66bbSMatthew G. Knepley   /* Compute boundary integrals */
42249566063dSJacob Faibussowitsch   /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */
4225a1cf66bbSMatthew G. Knepley   /* Assemble matrix */
42269371c9d4SSatish Balay   if (assembleJac) {
42279371c9d4SSatish Balay     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
42289371c9d4SSatish Balay     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
42299371c9d4SSatish Balay   }
42309371c9d4SSatish Balay   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
42319371c9d4SSatish Balay   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
42329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
4233a1cf66bbSMatthew G. Knepley   PetscFunctionReturn(0);
4234a1cf66bbSMatthew G. Knepley }
42353e9753d6SMatthew G. Knepley 
42363e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/
42373e9753d6SMatthew G. Knepley 
4238d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy)
4239d71ae5a4SJacob Faibussowitsch {
42403e9753d6SMatthew G. Knepley   PetscBool isPlex;
42413e9753d6SMatthew G. Knepley 
42423e9753d6SMatthew G. Knepley   PetscFunctionBegin;
42439566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
42443e9753d6SMatthew G. Knepley   if (isPlex) {
42453e9753d6SMatthew G. Knepley     *plex = dm;
42469566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
42473e9753d6SMatthew G. Knepley   } else {
42489566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex));
42493e9753d6SMatthew G. Knepley     if (!*plex) {
42509566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, plex));
42519566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex));
42521baa6e33SBarry Smith       if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex));
42533e9753d6SMatthew G. Knepley     } else {
42549566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)*plex));
42553e9753d6SMatthew G. Knepley     }
42563e9753d6SMatthew G. Knepley   }
42573e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
42583e9753d6SMatthew G. Knepley }
42593e9753d6SMatthew G. Knepley 
42603e9753d6SMatthew G. Knepley /*@
42613e9753d6SMatthew G. Knepley   DMPlexGetGeometryFVM - Return precomputed geometric data
42623e9753d6SMatthew G. Knepley 
42633e9753d6SMatthew G. Knepley   Collective on DM
42643e9753d6SMatthew G. Knepley 
42653e9753d6SMatthew G. Knepley   Input Parameter:
42663e9753d6SMatthew G. Knepley . dm - The DM
42673e9753d6SMatthew G. Knepley 
42683e9753d6SMatthew G. Knepley   Output Parameters:
42693e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry
42703e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry
42713e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell
42723e9753d6SMatthew G. Knepley 
42733e9753d6SMatthew G. Knepley   Level: developer
42743e9753d6SMatthew G. Knepley 
4275db781477SPatrick Sanan .seealso: `DMTSSetRHSFunctionLocal()`
42763e9753d6SMatthew G. Knepley @*/
4277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius)
4278d71ae5a4SJacob Faibussowitsch {
42793e9753d6SMatthew G. Knepley   DM plex;
42803e9753d6SMatthew G. Knepley 
42813e9753d6SMatthew G. Knepley   PetscFunctionBegin;
42823e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
42839566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
42849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL));
42859566063dSJacob Faibussowitsch   if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius));
42869566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
42873e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
42883e9753d6SMatthew G. Knepley }
42893e9753d6SMatthew G. Knepley 
42903e9753d6SMatthew G. Knepley /*@
42913e9753d6SMatthew G. Knepley   DMPlexGetGradientDM - Return gradient data layout
42923e9753d6SMatthew G. Knepley 
42933e9753d6SMatthew G. Knepley   Collective on DM
42943e9753d6SMatthew G. Knepley 
42953e9753d6SMatthew G. Knepley   Input Parameters:
42963e9753d6SMatthew G. Knepley + dm - The DM
42973e9753d6SMatthew G. Knepley - fv - The PetscFV
42983e9753d6SMatthew G. Knepley 
42993e9753d6SMatthew G. Knepley   Output Parameter:
43003e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values
43013e9753d6SMatthew G. Knepley 
43023e9753d6SMatthew G. Knepley   Level: developer
43033e9753d6SMatthew G. Knepley 
4304db781477SPatrick Sanan .seealso: `DMPlexGetGeometryFVM()`
43053e9753d6SMatthew G. Knepley @*/
4306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad)
4307d71ae5a4SJacob Faibussowitsch {
43083e9753d6SMatthew G. Knepley   DM        plex;
43093e9753d6SMatthew G. Knepley   PetscBool computeGradients;
43103e9753d6SMatthew G. Knepley 
43113e9753d6SMatthew G. Knepley   PetscFunctionBegin;
43123e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43133e9753d6SMatthew G. Knepley   PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2);
43143e9753d6SMatthew G. Knepley   PetscValidPointer(dmGrad, 3);
43159566063dSJacob Faibussowitsch   PetscCall(PetscFVGetComputeGradients(fv, &computeGradients));
43169371c9d4SSatish Balay   if (!computeGradients) {
43179371c9d4SSatish Balay     *dmGrad = NULL;
43189371c9d4SSatish Balay     PetscFunctionReturn(0);
43199371c9d4SSatish Balay   }
43209566063dSJacob Faibussowitsch   PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE));
43219566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad));
43229566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
43233e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
43243e9753d6SMatthew G. Knepley }
43253e9753d6SMatthew G. Knepley 
4326d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS)
4327d71ae5a4SJacob Faibussowitsch {
43283e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
43293e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL;
43303e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
43313e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
43323e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
43333e9753d6SMatthew G. Knepley   Vec             locA = NULL;
43343e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL;
43353e9753d6SMatthew G. Knepley   PetscInt        totDim, totDimAux = 0;
43363e9753d6SMatthew G. Knepley 
43373e9753d6SMatthew G. Knepley   PetscFunctionBegin;
43389566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
43399566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
43409566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
43419566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
43429566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
43433e9753d6SMatthew G. Knepley   if (locA) {
43443e9753d6SMatthew G. Knepley     DM dmAux;
43453e9753d6SMatthew G. Knepley 
43469566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
43479566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
43489566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
43499566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
43509566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
43519566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
43523e9753d6SMatthew G. Knepley   }
43530c290148SMatthew G. Knepley   {
43543e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
43553e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
43563e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
43573e9753d6SMatthew G. Knepley     IS              pointIS;
43583e9753d6SMatthew G. Knepley     const PetscInt *points;
43593e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
43603e9753d6SMatthew G. Knepley 
43619566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS));
43620c290148SMatthew G. Knepley     if (!pointIS) goto end; /* No points with that id on this process */
43633e9753d6SMatthew G. Knepley     {
43643e9753d6SMatthew G. Knepley       IS isectIS;
43653e9753d6SMatthew G. Knepley 
43663e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */
43679566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
43689566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
43693e9753d6SMatthew G. Knepley       pointIS = isectIS;
43703e9753d6SMatthew G. Knepley     }
43719566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
43729566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
43739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a));
43749566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
437548a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
43763e9753d6SMatthew G. Knepley     if (!qGeom) {
43773e9753d6SMatthew G. Knepley       PetscFE fe;
43783e9753d6SMatthew G. Knepley 
43799566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
43809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
43819566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
43823e9753d6SMatthew G. Knepley     }
43839566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
43849566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
43853e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
4386f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
43873e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
4388f15274beSMatthew Knepley       PetscInt       i;
43893e9753d6SMatthew G. Knepley 
43909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
43919566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
43923e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
43939566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
43943e9753d6SMatthew G. Knepley       if (locX_t) {
43959566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
43963e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
43979566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
43983e9753d6SMatthew G. Knepley       }
43993e9753d6SMatthew G. Knepley       if (locA) {
44003e9753d6SMatthew G. Knepley         PetscInt subp;
44013e9753d6SMatthew G. Knepley 
44029566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
44039566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
44043e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
44059566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
44063e9753d6SMatthew G. Knepley       }
44073e9753d6SMatthew G. Knepley     }
44089566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemVec, numFaces * totDim));
44093e9753d6SMatthew G. Knepley     {
44103e9753d6SMatthew G. Knepley       PetscFE      fe;
44113e9753d6SMatthew G. Knepley       PetscInt     Nb;
44123e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
44133e9753d6SMatthew G. Knepley       /* Conforming batches */
44143e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
44153e9753d6SMatthew G. Knepley       /* Remainder */
44163e9753d6SMatthew G. Knepley       PetscInt Nr, offset;
44173e9753d6SMatthew G. Knepley 
44189566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe));
44199566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
44209566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
44213e9753d6SMatthew G. Knepley       /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */
44223e9753d6SMatthew G. Knepley       blockSize = Nb;
44233e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
44249566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
44253e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
44263e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
44273e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
44283e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
44299566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
44309566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec));
44319566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom));
44329566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
44339566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim]));
44349566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
44353e9753d6SMatthew G. Knepley     }
44363e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
44373e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
44383e9753d6SMatthew G. Knepley 
44399566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim]));
44409566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
44419566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES));
44423e9753d6SMatthew G. Knepley     }
44439566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
44449566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
44459566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
44469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
44479566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemVec, a));
44483e9753d6SMatthew G. Knepley   }
44490c290148SMatthew G. Knepley end:
44509566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
44519566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
44523e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
44533e9753d6SMatthew G. Knepley }
44543e9753d6SMatthew G. Knepley 
4455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF)
4456d71ae5a4SJacob Faibussowitsch {
44573e9753d6SMatthew G. Knepley   DMField  coordField;
44583e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
44593e9753d6SMatthew G. Knepley   IS       facetIS;
44603e9753d6SMatthew G. Knepley   PetscInt dim;
44613e9753d6SMatthew G. Knepley 
44623e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44639566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
44649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
44659566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
44669566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
44679566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
44689566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
44693e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
44703e9753d6SMatthew G. Knepley }
44713e9753d6SMatthew G. Knepley 
4472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4473d71ae5a4SJacob Faibussowitsch {
44743e9753d6SMatthew G. Knepley   PetscDS  prob;
44753e9753d6SMatthew G. Knepley   PetscInt numBd, bd;
44763e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
44773e9753d6SMatthew G. Knepley   IS       facetIS    = NULL;
44783e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
44793e9753d6SMatthew G. Knepley   PetscInt dim;
44803e9753d6SMatthew G. Knepley 
44813e9753d6SMatthew G. Knepley   PetscFunctionBegin;
44829566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
44839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
44849566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
44859566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
44869566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
44873e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
448845480ffeSMatthew G. Knepley     PetscWeakForm           wf;
44893e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
44903e9753d6SMatthew G. Knepley     DMLabel                 label;
44913e9753d6SMatthew G. Knepley     const PetscInt         *values;
44920c290148SMatthew G. Knepley     PetscInt                field, numValues, v;
44933e9753d6SMatthew G. Knepley     PetscObject             obj;
44943e9753d6SMatthew G. Knepley     PetscClassId            id;
44950c290148SMatthew G. Knepley     PetscFormKey            key;
44963e9753d6SMatthew G. Knepley 
44979566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL));
44983d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
44999566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, field, &obj));
45009566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
45013d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
45023e9753d6SMatthew G. Knepley     if (!facetIS) {
45033e9753d6SMatthew G. Knepley       DMLabel  depthLabel;
45043e9753d6SMatthew G. Knepley       PetscInt dim;
45053e9753d6SMatthew G. Knepley 
45069566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
45079566063dSJacob Faibussowitsch       PetscCall(DMGetDimension(dm, &dim));
45089566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
45093e9753d6SMatthew G. Knepley     }
45109566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
45110c290148SMatthew G. Knepley     for (v = 0; v < numValues; ++v) {
45120c290148SMatthew G. Knepley       key.label = label;
45130c290148SMatthew G. Knepley       key.value = values[v];
45140c290148SMatthew G. Knepley       key.field = field;
45150c290148SMatthew G. Knepley       key.part  = 0;
45169566063dSJacob Faibussowitsch       PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS));
45170c290148SMatthew G. Knepley     }
45183e9753d6SMatthew G. Knepley   }
45199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
45203e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
45213e9753d6SMatthew G. Knepley }
45223e9753d6SMatthew G. Knepley 
4523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4524d71ae5a4SJacob Faibussowitsch {
45253e9753d6SMatthew G. Knepley   DM_Plex         *mesh       = (DM_Plex *)dm->data;
45263e9753d6SMatthew G. Knepley   const char      *name       = "Residual";
45273e9753d6SMatthew G. Knepley   DM               dmAux      = NULL;
45283e9753d6SMatthew G. Knepley   DM               dmGrad     = NULL;
45293e9753d6SMatthew G. Knepley   DMLabel          ghostLabel = NULL;
45306528b96dSMatthew G. Knepley   PetscDS          ds         = NULL;
45316528b96dSMatthew G. Knepley   PetscDS          dsAux      = NULL;
45323e9753d6SMatthew G. Knepley   PetscSection     section    = NULL;
45333e9753d6SMatthew G. Knepley   PetscBool        useFEM     = PETSC_FALSE;
45343e9753d6SMatthew G. Knepley   PetscBool        useFVM     = PETSC_FALSE;
45353e9753d6SMatthew G. Knepley   PetscBool        isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE;
45363e9753d6SMatthew G. Knepley   PetscFV          fvm        = NULL;
45373e9753d6SMatthew G. Knepley   PetscFVCellGeom *cgeomFVM   = NULL;
45383e9753d6SMatthew G. Knepley   PetscFVFaceGeom *fgeomFVM   = NULL;
45393e9753d6SMatthew G. Knepley   DMField          coordField = NULL;
45403e9753d6SMatthew G. Knepley   Vec              locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL;
45413e9753d6SMatthew G. Knepley   PetscScalar     *u = NULL, *u_t, *a, *uL, *uR;
45423e9753d6SMatthew G. Knepley   IS               chunkIS;
45433e9753d6SMatthew G. Knepley   const PetscInt  *cells;
45443e9753d6SMatthew G. Knepley   PetscInt         cStart, cEnd, numCells;
45453e9753d6SMatthew G. Knepley   PetscInt         Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd;
45463e9753d6SMatthew G. Knepley   PetscInt         maxDegree  = PETSC_MAX_INT;
45473e9753d6SMatthew G. Knepley   PetscQuadrature  affineQuad = NULL, *quads = NULL;
45483e9753d6SMatthew G. Knepley   PetscFEGeom     *affineGeom = NULL, **geoms = NULL;
45493e9753d6SMatthew G. Knepley 
45503e9753d6SMatthew G. Knepley   PetscFunctionBegin;
4551e04ae0b4SMatthew G. Knepley   if (!cellIS) PetscFunctionReturn(0);
45529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
45533e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
45543e9753d6SMatthew G. Knepley   /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */
45553e9753d6SMatthew G. Knepley   /* FEM+FVM */
45569566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
45579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
45583e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
45599566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
45609566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
45619566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
45629566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
45639566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
45649566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA));
45653e9753d6SMatthew G. Knepley   if (locA) {
45663e9753d6SMatthew G. Knepley     PetscInt subcell;
45679566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
45681059d808SMatthew G. Knepley     PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell));
45699566063dSJacob Faibussowitsch     PetscCall(DMGetCellDS(dmAux, subcell, &dsAux));
45709566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux));
45713e9753d6SMatthew G. Knepley   }
45723e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
45733e9753d6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
45743e9753d6SMatthew G. Knepley     PetscObject  obj;
45753e9753d6SMatthew G. Knepley     PetscClassId id;
45763e9753d6SMatthew G. Knepley     PetscBool    fimp;
45773e9753d6SMatthew G. Knepley 
45789566063dSJacob Faibussowitsch     PetscCall(PetscDSGetImplicit(ds, f, &fimp));
45793e9753d6SMatthew G. Knepley     if (isImplicit != fimp) continue;
45809566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(ds, f, &obj));
45819566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
4582ad540459SPierre Jolivet     if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE;
45839371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
45849371c9d4SSatish Balay       useFVM = PETSC_TRUE;
45859371c9d4SSatish Balay       fvm    = (PetscFV)obj;
45869371c9d4SSatish Balay     }
45873e9753d6SMatthew G. Knepley   }
45883e9753d6SMatthew G. Knepley   if (useFEM) {
45899566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateField(dm, &coordField));
45909566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
45913e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
45929566063dSJacob Faibussowitsch       PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad));
459348a46eb9SPierre Jolivet       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
45943e9753d6SMatthew G. Knepley     } else {
45959566063dSJacob Faibussowitsch       PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
45963e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
45973e9753d6SMatthew G. Knepley         PetscObject  obj;
45983e9753d6SMatthew G. Knepley         PetscClassId id;
45993e9753d6SMatthew G. Knepley         PetscBool    fimp;
46003e9753d6SMatthew G. Knepley 
46019566063dSJacob Faibussowitsch         PetscCall(PetscDSGetImplicit(ds, f, &fimp));
46023e9753d6SMatthew G. Knepley         if (isImplicit != fimp) continue;
46039566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
46049566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
46053e9753d6SMatthew G. Knepley         if (id == PETSCFE_CLASSID) {
46063e9753d6SMatthew G. Knepley           PetscFE fe = (PetscFE)obj;
46073e9753d6SMatthew G. Knepley 
46089566063dSJacob Faibussowitsch           PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
46099566063dSJacob Faibussowitsch           PetscCall(PetscObjectReference((PetscObject)quads[f]));
46109566063dSJacob Faibussowitsch           PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
46113e9753d6SMatthew G. Knepley         }
46123e9753d6SMatthew G. Knepley       }
46133e9753d6SMatthew G. Knepley     }
46143e9753d6SMatthew G. Knepley   }
46153e9753d6SMatthew G. Knepley   if (useFVM) {
46169566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL));
46179566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM));
46189566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM));
46193e9753d6SMatthew G. Knepley     /* Reconstruct and limit cell gradients */
46209566063dSJacob Faibussowitsch     PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad));
46213e9753d6SMatthew G. Knepley     if (dmGrad) {
46229566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
46239566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalVector(dmGrad, &grad));
46249566063dSJacob Faibussowitsch       PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad));
46253e9753d6SMatthew G. Knepley       /* Communicate gradient values */
46269566063dSJacob Faibussowitsch       PetscCall(DMGetLocalVector(dmGrad, &locGrad));
46279566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad));
46289566063dSJacob Faibussowitsch       PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad));
46299566063dSJacob Faibussowitsch       PetscCall(DMRestoreGlobalVector(dmGrad, &grad));
46303e9753d6SMatthew G. Knepley     }
46313e9753d6SMatthew G. Knepley     /* Handle non-essential (e.g. outflow) boundary values */
46329566063dSJacob Faibussowitsch     PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad));
46333e9753d6SMatthew G. Knepley   }
46343e9753d6SMatthew G. Knepley   /* Loop over chunks */
46359566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS));
46363e9753d6SMatthew G. Knepley   numCells      = cEnd - cStart;
46373e9753d6SMatthew G. Knepley   numChunks     = 1;
46383e9753d6SMatthew G. Knepley   cellChunkSize = numCells / numChunks;
46393e9753d6SMatthew G. Knepley   faceChunkSize = (fEnd - fStart) / numChunks;
46403e9753d6SMatthew G. Knepley   numChunks     = PetscMin(1, numCells);
46413e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
46423e9753d6SMatthew G. Knepley     PetscScalar     *elemVec, *fluxL, *fluxR;
46433e9753d6SMatthew G. Knepley     PetscReal       *vol;
46443e9753d6SMatthew G. Knepley     PetscFVFaceGeom *fgeom;
46453e9753d6SMatthew G. Knepley     PetscInt         cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
46463e9753d6SMatthew G. Knepley     PetscInt         fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face;
46473e9753d6SMatthew G. Knepley 
46483e9753d6SMatthew G. Knepley     /* Extract field coefficients */
46493e9753d6SMatthew G. Knepley     if (useFEM) {
46509566063dSJacob Faibussowitsch       PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells));
46519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
46529566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
46539566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(elemVec, numCells * totDim));
46543e9753d6SMatthew G. Knepley     }
46553e9753d6SMatthew G. Knepley     if (useFVM) {
46569566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
46579566063dSJacob Faibussowitsch       PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
46589566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
46599566063dSJacob Faibussowitsch       PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
46609566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxL, numFaces * totDim));
46619566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(fluxR, numFaces * totDim));
46623e9753d6SMatthew G. Knepley     }
46633e9753d6SMatthew G. Knepley     /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */
46643e9753d6SMatthew G. Knepley     /* Loop over fields */
46653e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
46663e9753d6SMatthew G. Knepley       PetscObject  obj;
46673e9753d6SMatthew G. Knepley       PetscClassId id;
46683e9753d6SMatthew G. Knepley       PetscBool    fimp;
46693e9753d6SMatthew G. Knepley       PetscInt     numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset;
46703e9753d6SMatthew G. Knepley 
46716528b96dSMatthew G. Knepley       key.field = f;
46729566063dSJacob Faibussowitsch       PetscCall(PetscDSGetImplicit(ds, f, &fimp));
46733e9753d6SMatthew G. Knepley       if (isImplicit != fimp) continue;
46749566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, &obj));
46759566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
46763e9753d6SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
46773e9753d6SMatthew G. Knepley         PetscFE         fe        = (PetscFE)obj;
46783e9753d6SMatthew G. Knepley         PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
46793e9753d6SMatthew G. Knepley         PetscFEGeom    *chunkGeom = NULL;
46803e9753d6SMatthew G. Knepley         PetscQuadrature quad      = affineQuad ? affineQuad : quads[f];
46813e9753d6SMatthew G. Knepley         PetscInt        Nq, Nb;
46823e9753d6SMatthew G. Knepley 
46839566063dSJacob Faibussowitsch         PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
46849566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
46859566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDimension(fe, &Nb));
46863e9753d6SMatthew G. Knepley         blockSize = Nb;
46873e9753d6SMatthew G. Knepley         batchSize = numBlocks * blockSize;
46889566063dSJacob Faibussowitsch         PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
46893e9753d6SMatthew G. Knepley         numChunks = numCells / (numBatches * batchSize);
46903e9753d6SMatthew G. Knepley         Ne        = numChunks * numBatches * batchSize;
46913e9753d6SMatthew G. Knepley         Nr        = numCells % (numBatches * batchSize);
46923e9753d6SMatthew G. Knepley         offset    = numCells - Nr;
46933e9753d6SMatthew G. Knepley         /* Integrate FE residual to get elemVec (need fields at quadrature points) */
46943e9753d6SMatthew G. Knepley         /*   For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */
46959566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
46969566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec));
46979566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom));
46989566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, &a[offset * totDimAux], t, &elemVec[offset * totDim]));
46999566063dSJacob Faibussowitsch         PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom));
47003e9753d6SMatthew G. Knepley       } else if (id == PETSCFV_CLASSID) {
47013e9753d6SMatthew G. Knepley         PetscFV fv = (PetscFV)obj;
47023e9753d6SMatthew G. Knepley 
47033e9753d6SMatthew G. Knepley         Ne = numFaces;
47043e9753d6SMatthew G. Knepley         /* Riemann solve over faces (need fields at face centroids) */
47053e9753d6SMatthew G. Knepley         /*   We need to evaluate FE fields at those coordinates */
47069566063dSJacob Faibussowitsch         PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR));
470763a3b9bcSJacob Faibussowitsch       } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f);
47083e9753d6SMatthew G. Knepley     }
47093e9753d6SMatthew G. Knepley     /* Loop over domain */
47103e9753d6SMatthew G. Knepley     if (useFEM) {
47113e9753d6SMatthew G. Knepley       /* Add elemVec to locX */
47123e9753d6SMatthew G. Knepley       for (c = cS; c < cE; ++c) {
47133e9753d6SMatthew G. Knepley         const PetscInt cell = cells ? cells[c] : c;
47143e9753d6SMatthew G. Knepley         const PetscInt cind = c - cStart;
47153e9753d6SMatthew G. Knepley 
47169566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
47173e9753d6SMatthew G. Knepley         if (ghostLabel) {
47183e9753d6SMatthew G. Knepley           PetscInt ghostVal;
47193e9753d6SMatthew G. Knepley 
47209566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
47213e9753d6SMatthew G. Knepley           if (ghostVal > 0) continue;
47223e9753d6SMatthew G. Knepley         }
47239566063dSJacob Faibussowitsch         PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
47243e9753d6SMatthew G. Knepley       }
47253e9753d6SMatthew G. Knepley     }
47263e9753d6SMatthew G. Knepley     if (useFVM) {
47273e9753d6SMatthew G. Knepley       PetscScalar *fa;
47283e9753d6SMatthew G. Knepley       PetscInt     iface;
47293e9753d6SMatthew G. Knepley 
47309566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
47313e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47323e9753d6SMatthew G. Knepley         PetscFV      fv;
47333e9753d6SMatthew G. Knepley         PetscObject  obj;
47343e9753d6SMatthew G. Knepley         PetscClassId id;
47353e9753d6SMatthew G. Knepley         PetscInt     foff, pdim;
47363e9753d6SMatthew G. Knepley 
47379566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47389566063dSJacob Faibussowitsch         PetscCall(PetscDSGetFieldOffset(ds, f, &foff));
47399566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47403e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
47413e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
47429566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
47433e9753d6SMatthew G. Knepley         /* Accumulate fluxes to cells */
47443e9753d6SMatthew G. Knepley         for (face = fS, iface = 0; face < fE; ++face) {
47453e9753d6SMatthew G. Knepley           const PetscInt *scells;
47463e9753d6SMatthew G. Knepley           PetscScalar    *fL = NULL, *fR = NULL;
47473e9753d6SMatthew G. Knepley           PetscInt        ghost, d, nsupp, nchild;
47483e9753d6SMatthew G. Knepley 
47499566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, face, &ghost));
47509566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupportSize(dm, face, &nsupp));
47519566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL));
47523e9753d6SMatthew G. Knepley           if (ghost >= 0 || nsupp > 2 || nchild > 0) continue;
47539566063dSJacob Faibussowitsch           PetscCall(DMPlexGetSupport(dm, face, &scells));
47549566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost));
47559566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL));
47569566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost));
47579566063dSJacob Faibussowitsch           if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR));
47583e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) {
47593e9753d6SMatthew G. Knepley             if (fL) fL[d] -= fluxL[iface * totDim + foff + d];
47603e9753d6SMatthew G. Knepley             if (fR) fR[d] += fluxR[iface * totDim + foff + d];
47613e9753d6SMatthew G. Knepley           }
47623e9753d6SMatthew G. Knepley           ++iface;
47633e9753d6SMatthew G. Knepley         }
47643e9753d6SMatthew G. Knepley       }
47659566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
47663e9753d6SMatthew G. Knepley     }
47673e9753d6SMatthew G. Knepley     /* Handle time derivative */
47683e9753d6SMatthew G. Knepley     if (locX_t) {
47693e9753d6SMatthew G. Knepley       PetscScalar *x_t, *fa;
47703e9753d6SMatthew G. Knepley 
47719566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locF, &fa));
47729566063dSJacob Faibussowitsch       PetscCall(VecGetArray(locX_t, &x_t));
47733e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
47743e9753d6SMatthew G. Knepley         PetscFV      fv;
47753e9753d6SMatthew G. Knepley         PetscObject  obj;
47763e9753d6SMatthew G. Knepley         PetscClassId id;
47773e9753d6SMatthew G. Knepley         PetscInt     pdim, d;
47783e9753d6SMatthew G. Knepley 
47799566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, f, &obj));
47809566063dSJacob Faibussowitsch         PetscCall(PetscObjectGetClassId(obj, &id));
47813e9753d6SMatthew G. Knepley         if (id != PETSCFV_CLASSID) continue;
47823e9753d6SMatthew G. Knepley         fv = (PetscFV)obj;
47839566063dSJacob Faibussowitsch         PetscCall(PetscFVGetNumComponents(fv, &pdim));
47843e9753d6SMatthew G. Knepley         for (c = cS; c < cE; ++c) {
47853e9753d6SMatthew G. Knepley           const PetscInt cell = cells ? cells[c] : c;
47863e9753d6SMatthew G. Knepley           PetscScalar   *u_t, *r;
47873e9753d6SMatthew G. Knepley 
47883e9753d6SMatthew G. Knepley           if (ghostLabel) {
47893e9753d6SMatthew G. Knepley             PetscInt ghostVal;
47903e9753d6SMatthew G. Knepley 
47919566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
47923e9753d6SMatthew G. Knepley             if (ghostVal > 0) continue;
47933e9753d6SMatthew G. Knepley           }
47949566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t));
47959566063dSJacob Faibussowitsch           PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r));
47963e9753d6SMatthew G. Knepley           for (d = 0; d < pdim; ++d) r[d] += u_t[d];
47973e9753d6SMatthew G. Knepley         }
47983e9753d6SMatthew G. Knepley       }
47999566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locX_t, &x_t));
48009566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(locF, &fa));
48013e9753d6SMatthew G. Knepley     }
48023e9753d6SMatthew G. Knepley     if (useFEM) {
48039566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a));
48049566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
48053e9753d6SMatthew G. Knepley     }
48063e9753d6SMatthew G. Knepley     if (useFVM) {
48079566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR));
48089566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol));
48099566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL));
48109566063dSJacob Faibussowitsch       PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR));
48119566063dSJacob Faibussowitsch       if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad));
48123e9753d6SMatthew G. Knepley     }
48133e9753d6SMatthew G. Knepley   }
48149566063dSJacob Faibussowitsch   if (useFEM) PetscCall(ISDestroy(&chunkIS));
48159566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
48163e9753d6SMatthew G. Knepley 
48173e9753d6SMatthew G. Knepley   if (useFEM) {
48189566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user));
48193e9753d6SMatthew G. Knepley 
48203e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
48219566063dSJacob Faibussowitsch       PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
48229566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureDestroy(&affineQuad));
48233e9753d6SMatthew G. Knepley     } else {
48243e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
48259566063dSJacob Faibussowitsch         PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
48269566063dSJacob Faibussowitsch         PetscCall(PetscQuadratureDestroy(&quads[f]));
48273e9753d6SMatthew G. Knepley       }
48289566063dSJacob Faibussowitsch       PetscCall(PetscFree2(quads, geoms));
48293e9753d6SMatthew G. Knepley     }
48303e9753d6SMatthew G. Knepley   }
48313e9753d6SMatthew G. Knepley 
48323e9753d6SMatthew G. Knepley   /* FEM */
48333e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
48343e9753d6SMatthew G. Knepley   /* 2: Get geometric data */
48353e9753d6SMatthew G. Knepley   /* 3: Handle boundary values */
48363e9753d6SMatthew G. Knepley   /* 4: Loop over domain */
48373e9753d6SMatthew G. Knepley   /*   Extract coefficients */
48383e9753d6SMatthew G. Knepley   /* Loop over fields */
48393e9753d6SMatthew G. Knepley   /*   Set tiling for FE*/
48403e9753d6SMatthew G. Knepley   /*   Integrate FE residual to get elemVec */
48413e9753d6SMatthew G. Knepley   /*     Loop over subdomain */
48423e9753d6SMatthew G. Knepley   /*       Loop over quad points */
48433e9753d6SMatthew G. Knepley   /*         Transform coords to real space */
48443e9753d6SMatthew G. Knepley   /*         Evaluate field and aux fields at point */
48453e9753d6SMatthew G. Knepley   /*         Evaluate residual at point */
48463e9753d6SMatthew G. Knepley   /*         Transform residual to real space */
48473e9753d6SMatthew G. Knepley   /*       Add residual to elemVec */
48483e9753d6SMatthew G. Knepley   /* Loop over domain */
48493e9753d6SMatthew G. Knepley   /*   Add elemVec to locX */
48503e9753d6SMatthew G. Knepley 
48513e9753d6SMatthew G. Knepley   /* FVM */
48523e9753d6SMatthew G. Knepley   /* Get geometric data */
48533e9753d6SMatthew G. Knepley   /* If using gradients */
48543e9753d6SMatthew G. Knepley   /*   Compute gradient data */
48553e9753d6SMatthew G. Knepley   /*   Loop over domain faces */
48563e9753d6SMatthew G. Knepley   /*     Count computational faces */
48573e9753d6SMatthew G. Knepley   /*     Reconstruct cell gradient */
48583e9753d6SMatthew G. Knepley   /*   Loop over domain cells */
48593e9753d6SMatthew G. Knepley   /*     Limit cell gradients */
48603e9753d6SMatthew G. Knepley   /* Handle boundary values */
48613e9753d6SMatthew G. Knepley   /* Loop over domain faces */
48623e9753d6SMatthew G. Knepley   /*   Read out field, centroid, normal, volume for each side of face */
48633e9753d6SMatthew G. Knepley   /* Riemann solve over faces */
48643e9753d6SMatthew G. Knepley   /* Loop over domain faces */
48653e9753d6SMatthew G. Knepley   /*   Accumulate fluxes to cells */
48663e9753d6SMatthew G. Knepley   /* TODO Change printFEM to printDisc here */
48673e9753d6SMatthew G. Knepley   if (mesh->printFEM) {
48683e9753d6SMatthew G. Knepley     Vec          locFbc;
48693e9753d6SMatthew G. Knepley     PetscInt     pStart, pEnd, p, maxDof;
48703e9753d6SMatthew G. Knepley     PetscScalar *zeroes;
48713e9753d6SMatthew G. Knepley 
48729566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(locF, &locFbc));
48739566063dSJacob Faibussowitsch     PetscCall(VecCopy(locF, locFbc));
48749566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
48759566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetMaxDof(section, &maxDof));
48769566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(maxDof, &zeroes));
487748a46eb9SPierre Jolivet     for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES));
48789566063dSJacob Faibussowitsch     PetscCall(PetscFree(zeroes));
48799566063dSJacob Faibussowitsch     PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc));
48809566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&locFbc));
48813e9753d6SMatthew G. Knepley   }
48829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
48833e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
48843e9753d6SMatthew G. Knepley }
48853e9753d6SMatthew G. Knepley 
48866528b96dSMatthew G. Knepley /*
48876528b96dSMatthew G. Knepley   1) Allow multiple kernels for BdResidual for hybrid DS
48886528b96dSMatthew G. Knepley 
48896528b96dSMatthew G. Knepley   DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux
48906528b96dSMatthew G. Knepley 
48916528b96dSMatthew G. Knepley   DONE 3) Change DMGetCellFields() to get different aux data a[] for each side
48926528b96dSMatthew G. Knepley      - I think I just need to replace a[] with the closure from each face
48936528b96dSMatthew G. Knepley 
48946528b96dSMatthew G. Knepley   4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before
48956528b96dSMatthew G. Knepley */
4896d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user)
4897d71ae5a4SJacob Faibussowitsch {
48983e9753d6SMatthew G. Knepley   DM_Plex        *mesh       = (DM_Plex *)dm->data;
48993e9753d6SMatthew G. Knepley   const char     *name       = "Hybrid Residual";
490004c51a94SMatthew G. Knepley   DM              dmAux[3]   = {NULL, NULL, NULL};
49013e9753d6SMatthew G. Knepley   DMLabel         ghostLabel = NULL;
49026528b96dSMatthew G. Knepley   PetscDS         ds         = NULL;
49036528b96dSMatthew G. Knepley   PetscDS         dsAux[3]   = {NULL, NULL, NULL};
490404c51a94SMatthew G. Knepley   Vec             locA[3]    = {NULL, NULL, NULL};
4905b2ab40e6SMatthew G. Knepley   PetscScalar    *a[3]       = {NULL, NULL, NULL};
49063e9753d6SMatthew G. Knepley   PetscSection    section    = NULL;
49073e9753d6SMatthew G. Knepley   DMField         coordField = NULL;
4908b2ab40e6SMatthew G. Knepley   PetscScalar    *u          = NULL, *u_t;
49093e9753d6SMatthew G. Knepley   PetscScalar    *elemVec;
49103e9753d6SMatthew G. Knepley   IS              chunkIS;
49113e9753d6SMatthew G. Knepley   const PetscInt *cells;
49123e9753d6SMatthew G. Knepley   PetscInt       *faces;
49133e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
49146528b96dSMatthew G. Knepley   PetscInt        Nf, f, totDim, totDimAux[3], numChunks, cellChunkSize, chunk;
49153e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
49163e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
49173e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
49183e9753d6SMatthew G. Knepley 
49193e9753d6SMatthew G. Knepley   PetscFunctionBegin;
49205fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
49215fedec97SMatthew G. Knepley     const char *name;
49229566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
492363a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
49245fedec97SMatthew G. Knepley   }
49259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0));
49263e9753d6SMatthew G. Knepley   /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */
49273e9753d6SMatthew G. Knepley   /* FEM */
49289566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
49299566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
49303e9753d6SMatthew G. Knepley   /* 1: Get sizes from dm and dmAux */
49319566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
49329566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
49331059d808SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
49349566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
49359566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
49369566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
493704c51a94SMatthew G. Knepley   if (locA[2]) {
49381059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
49391059d808SMatthew G. Knepley 
49409566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
49411059d808SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2]));
49429566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
49436528b96dSMatthew G. Knepley     {
49446528b96dSMatthew G. Knepley       const PetscInt *cone;
49456528b96dSMatthew G. Knepley       PetscInt        c;
49466528b96dSMatthew G. Knepley 
49471059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
49486528b96dSMatthew G. Knepley       for (c = 0; c < 2; ++c) {
49496528b96dSMatthew G. Knepley         const PetscInt *support;
49506528b96dSMatthew G. Knepley         PetscInt        ssize, s;
49516528b96dSMatthew G. Knepley 
49529566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
49539566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
49541059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
49551059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
49561059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
49571059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
49589566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
4959c75bfeddSPierre Jolivet         PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part);
49609566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
4961ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
49629566063dSJacob Faibussowitsch         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c]));
49639566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
49646528b96dSMatthew G. Knepley       }
49656528b96dSMatthew G. Knepley     }
49663e9753d6SMatthew G. Knepley   }
49673e9753d6SMatthew G. Knepley   /* 2: Setup geometric data */
49689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
49699566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
49703e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
49719566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
49723e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
49733e9753d6SMatthew G. Knepley       PetscFE fe;
49743e9753d6SMatthew G. Knepley 
49759566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
49763e9753d6SMatthew G. Knepley       if (fe) {
49779566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
49789566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
49793e9753d6SMatthew G. Knepley       }
49803e9753d6SMatthew G. Knepley     }
49813e9753d6SMatthew G. Knepley   }
49823e9753d6SMatthew G. Knepley   /* Loop over chunks */
49833e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
49843e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
4985a4158a15SMatthew G. Knepley   PetscCall(PetscCalloc1(1 * cellChunkSize, &faces));
4986a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
49873e9753d6SMatthew G. Knepley   /* Extract field coefficients */
49883e9753d6SMatthew G. Knepley   /* NOTE This needs the end cap faces to have identical orientations */
49899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
49909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a));
49919566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVec));
49923e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
49933e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
49943e9753d6SMatthew G. Knepley 
49959566063dSJacob Faibussowitsch     PetscCall(PetscMemzero(elemVec, cellChunkSize * totDim * sizeof(PetscScalar)));
49963e9753d6SMatthew G. Knepley     /* Get faces */
49973e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
49983e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
49993e9753d6SMatthew G. Knepley       const PetscInt *cone;
50009566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, cell, &cone));
5001a4158a15SMatthew G. Knepley       faces[0 * cellChunkSize + (c - cS)] = cone[0];
5002a4158a15SMatthew G. Knepley       /*faces[1*cellChunkSize+(c-cS)] = cone[1];*/
50033e9753d6SMatthew G. Knepley     }
5004a4158a15SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER));
50053e9753d6SMatthew G. Knepley     /* Get geometric data */
50063e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
50079566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
50089566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
50093e9753d6SMatthew G. Knepley     } else {
50103e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
50119566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
50123e9753d6SMatthew G. Knepley       }
50133e9753d6SMatthew G. Knepley     }
50143e9753d6SMatthew G. Knepley     /* Loop over fields */
50153e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
50163e9753d6SMatthew G. Knepley       PetscFE         fe;
50173e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[f];
5018148442b3SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
50193e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[f];
50203e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
50215fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
50223e9753d6SMatthew G. Knepley 
50239566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
50243e9753d6SMatthew G. Knepley       if (!fe) continue;
50259566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
50269566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
50279566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
50283e9753d6SMatthew G. Knepley       blockSize = Nb;
50293e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
50309566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
50313e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
50323e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
50333e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
50343e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
50359566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
50369566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom));
50379566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
50385fedec97SMatthew G. Knepley       chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE;
50396528b96dSMatthew G. Knepley       key[0].field                                = f;
50406528b96dSMatthew G. Knepley       key[1].field                                = f;
50415fedec97SMatthew G. Knepley       key[2].field                                = f;
50429566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVec));
50439566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVec[offset * totDim]));
50449566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVec));
50459566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVec[offset * totDim]));
50469566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVec));
50479566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVec[offset * totDim]));
50489566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
50499566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
50503e9753d6SMatthew G. Knepley     }
50513e9753d6SMatthew G. Knepley     /* Add elemVec to locX */
50523e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
50533e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
50543e9753d6SMatthew G. Knepley       const PetscInt cind = c - cStart;
50553e9753d6SMatthew G. Knepley 
50569566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim]));
50573e9753d6SMatthew G. Knepley       if (ghostLabel) {
50583e9753d6SMatthew G. Knepley         PetscInt ghostVal;
50593e9753d6SMatthew G. Knepley 
50609566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal));
50613e9753d6SMatthew G. Knepley         if (ghostVal > 0) continue;
50623e9753d6SMatthew G. Knepley       }
50639566063dSJacob Faibussowitsch       PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES));
50643e9753d6SMatthew G. Knepley     }
50653e9753d6SMatthew G. Knepley   }
50669566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
50679566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a));
50689566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec));
50699566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
50709566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
50719566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
50723e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
50739566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
50749566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
50753e9753d6SMatthew G. Knepley   } else {
50763e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
50779566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
50789566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
50793e9753d6SMatthew G. Knepley     }
50809566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
50813e9753d6SMatthew G. Knepley   }
50829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0));
50833e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
50843e9753d6SMatthew G. Knepley }
50853e9753d6SMatthew G. Knepley 
5086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS)
5087d71ae5a4SJacob Faibussowitsch {
50883e9753d6SMatthew G. Knepley   DM_Plex        *mesh = (DM_Plex *)dm->data;
50893e9753d6SMatthew G. Knepley   DM              plex = NULL, plexA = NULL, tdm;
50903e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
50913e9753d6SMatthew G. Knepley   PetscDS         prob, probAux       = NULL;
50923e9753d6SMatthew G. Knepley   PetscSection    section, sectionAux = NULL;
5093e432b41dSStefano Zampini   PetscSection    globalSection;
50943e9753d6SMatthew G. Knepley   Vec             locA = NULL, tv;
50953e9753d6SMatthew G. Knepley   PetscScalar    *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL;
50963e9753d6SMatthew G. Knepley   PetscInt        v;
50973e9753d6SMatthew G. Knepley   PetscInt        Nf, totDim, totDimAux = 0;
5098e432b41dSStefano Zampini   PetscBool       transform;
50993e9753d6SMatthew G. Knepley 
51003e9753d6SMatthew G. Knepley   PetscFunctionBegin;
51019566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
51029566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
51039566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
51049566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
51059566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
51069566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
51079566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
51089566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
51099566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA));
51103e9753d6SMatthew G. Knepley   if (locA) {
51113e9753d6SMatthew G. Knepley     DM dmAux;
51123e9753d6SMatthew G. Knepley 
51139566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA, &dmAux));
51149566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
51159566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexA));
51169566063dSJacob Faibussowitsch     PetscCall(DMGetDS(plexA, &probAux));
51179566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
51189566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexA, &sectionAux));
51193e9753d6SMatthew G. Knepley   }
51203e9753d6SMatthew G. Knepley 
51219566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
51223e9753d6SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
51233e9753d6SMatthew G. Knepley     PetscFEGeom    *fgeom;
51243e9753d6SMatthew G. Knepley     PetscInt        maxDegree;
51253e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
51263e9753d6SMatthew G. Knepley     IS              pointIS;
51273e9753d6SMatthew G. Knepley     const PetscInt *points;
512806ad1575SMatthew G. Knepley     PetscFormKey    key;
51293e9753d6SMatthew G. Knepley     PetscInt        numFaces, face, Nq;
51303e9753d6SMatthew G. Knepley 
513145480ffeSMatthew G. Knepley     key.label = label;
513245480ffeSMatthew G. Knepley     key.value = values[v];
513306ad1575SMatthew G. Knepley     key.part  = 0;
51349566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
51353e9753d6SMatthew G. Knepley     if (!pointIS) continue; /* No points with that id on this process */
51363e9753d6SMatthew G. Knepley     {
51373e9753d6SMatthew G. Knepley       IS isectIS;
51383e9753d6SMatthew G. Knepley 
51393e9753d6SMatthew G. Knepley       /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */
51409566063dSJacob Faibussowitsch       PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS));
51419566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
51423e9753d6SMatthew G. Knepley       pointIS = isectIS;
51433e9753d6SMatthew G. Knepley     }
51449566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pointIS, &numFaces));
51459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
51469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a));
51479566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree));
514848a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom));
51493e9753d6SMatthew G. Knepley     if (!qGeom) {
51503e9753d6SMatthew G. Knepley       PetscFE fe;
51513e9753d6SMatthew G. Knepley 
51529566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
51539566063dSJacob Faibussowitsch       PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom));
51549566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
51553e9753d6SMatthew G. Knepley     }
51569566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
51579566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
51583e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
5159f15274beSMatthew Knepley       const PetscInt point = points[face], *support;
51603e9753d6SMatthew G. Knepley       PetscScalar   *x     = NULL;
5161f15274beSMatthew Knepley       PetscInt       i;
51623e9753d6SMatthew G. Knepley 
51639566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, point, &support));
51649566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x));
51653e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i];
51669566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x));
51673e9753d6SMatthew G. Knepley       if (locX_t) {
51689566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x));
51693e9753d6SMatthew G. Knepley         for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i];
51709566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x));
51713e9753d6SMatthew G. Knepley       }
51723e9753d6SMatthew G. Knepley       if (locA) {
51733e9753d6SMatthew G. Knepley         PetscInt subp;
51749566063dSJacob Faibussowitsch         PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp));
51759566063dSJacob Faibussowitsch         PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x));
51763e9753d6SMatthew G. Knepley         for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i];
51779566063dSJacob Faibussowitsch         PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x));
51783e9753d6SMatthew G. Knepley       }
51793e9753d6SMatthew G. Knepley     }
51809566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim));
51813e9753d6SMatthew G. Knepley     {
51823e9753d6SMatthew G. Knepley       PetscFE  fe;
51833e9753d6SMatthew G. Knepley       PetscInt Nb;
51843e9753d6SMatthew G. Knepley       /* Conforming batches */
51853e9753d6SMatthew G. Knepley       PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
51863e9753d6SMatthew G. Knepley       /* Remainder */
51873e9753d6SMatthew G. Knepley       PetscFEGeom *chunkGeom = NULL;
51883e9753d6SMatthew G. Knepley       PetscInt     fieldJ, Nr, offset;
51893e9753d6SMatthew G. Knepley 
51909566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
51919566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(fe, &Nb));
51929566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
51933e9753d6SMatthew G. Knepley       blockSize = Nb;
51943e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
51959566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
51963e9753d6SMatthew G. Knepley       numChunks = numFaces / (numBatches * batchSize);
51973e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
51983e9753d6SMatthew G. Knepley       Nr        = numFaces % (numBatches * batchSize);
51993e9753d6SMatthew G. Knepley       offset    = numFaces - Nr;
52009566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom));
52013e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
520245480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
52039566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
52043e9753d6SMatthew G. Knepley       }
52059566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom));
52063e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
520745480ffeSMatthew G. Knepley         key.field = fieldI * Nf + fieldJ;
52089566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim]));
52093e9753d6SMatthew G. Knepley       }
52109566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom));
52113e9753d6SMatthew G. Knepley     }
52123e9753d6SMatthew G. Knepley     for (face = 0; face < numFaces; ++face) {
52133e9753d6SMatthew G. Knepley       const PetscInt point = points[face], *support;
52143e9753d6SMatthew G. Knepley 
52153e9753d6SMatthew G. Knepley       /* Transform to global basis before insertion in Jacobian */
52169566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(plex, point, &support));
52179566063dSJacob Faibussowitsch       if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim]));
52189566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim]));
52199566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES));
52203e9753d6SMatthew G. Knepley     }
52219566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom));
52229566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
52239566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
52249566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
52259566063dSJacob Faibussowitsch     PetscCall(PetscFree4(u, u_t, elemMat, a));
52263e9753d6SMatthew G. Knepley   }
52279566063dSJacob Faibussowitsch   if (plex) PetscCall(DMDestroy(&plex));
52289566063dSJacob Faibussowitsch   if (plexA) PetscCall(DMDestroy(&plexA));
52293e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
52303e9753d6SMatthew G. Knepley }
52313e9753d6SMatthew G. Knepley 
5232d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP)
5233d71ae5a4SJacob Faibussowitsch {
52343e9753d6SMatthew G. Knepley   DMField  coordField;
52353e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
52363e9753d6SMatthew G. Knepley   IS       facetIS;
52373e9753d6SMatthew G. Knepley   PetscInt dim;
52383e9753d6SMatthew G. Knepley 
52393e9753d6SMatthew G. Knepley   PetscFunctionBegin;
52409566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
52419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
52429566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
52439566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
52449566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
52459566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
52463e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
52473e9753d6SMatthew G. Knepley }
52483e9753d6SMatthew G. Knepley 
5249d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user)
5250d71ae5a4SJacob Faibussowitsch {
52513e9753d6SMatthew G. Knepley   PetscDS  prob;
52523e9753d6SMatthew G. Knepley   PetscInt dim, numBd, bd;
52533e9753d6SMatthew G. Knepley   DMLabel  depthLabel;
52543e9753d6SMatthew G. Knepley   DMField  coordField = NULL;
52553e9753d6SMatthew G. Knepley   IS       facetIS;
52563e9753d6SMatthew G. Knepley 
52573e9753d6SMatthew G. Knepley   PetscFunctionBegin;
52589566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &prob));
52599566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
52609566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
52619566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS));
52629566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumBoundary(prob, &numBd));
52639566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
52643e9753d6SMatthew G. Knepley   for (bd = 0; bd < numBd; ++bd) {
526545480ffeSMatthew G. Knepley     PetscWeakForm           wf;
52663e9753d6SMatthew G. Knepley     DMBoundaryConditionType type;
52673e9753d6SMatthew G. Knepley     DMLabel                 label;
52683e9753d6SMatthew G. Knepley     const PetscInt         *values;
52693e9753d6SMatthew G. Knepley     PetscInt                fieldI, numValues;
52703e9753d6SMatthew G. Knepley     PetscObject             obj;
52713e9753d6SMatthew G. Knepley     PetscClassId            id;
52723e9753d6SMatthew G. Knepley 
52739566063dSJacob Faibussowitsch     PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL));
52743d3e5d66SMatthew G. Knepley     if (type & DM_BC_ESSENTIAL) continue;
52759566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj));
52769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId(obj, &id));
52773d3e5d66SMatthew G. Knepley     if (id != PETSCFE_CLASSID) continue;
52789566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS));
52793e9753d6SMatthew G. Knepley   }
52809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&facetIS));
52813e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
52823e9753d6SMatthew G. Knepley }
52833e9753d6SMatthew G. Knepley 
5284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user)
5285d71ae5a4SJacob Faibussowitsch {
52863e9753d6SMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
52873e9753d6SMatthew G. Knepley   const char     *name  = "Jacobian";
52889a2a23afSMatthew G. Knepley   DM              dmAux = NULL, plex, tdm;
52893e9753d6SMatthew G. Knepley   DMEnclosureType encAux;
52903e9753d6SMatthew G. Knepley   Vec             A, tv;
52913e9753d6SMatthew G. Knepley   DMField         coordField;
52923e9753d6SMatthew G. Knepley   PetscDS         prob, probAux = NULL;
5293e432b41dSStefano Zampini   PetscSection    section, globalSection, sectionAux;
52943e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL;
52953e9753d6SMatthew G. Knepley   const PetscInt *cells;
52963e9753d6SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
529728351e22SJed Brown   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
5298e04ae0b4SMatthew G. Knepley   PetscBool       hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform;
52993e9753d6SMatthew G. Knepley 
53003e9753d6SMatthew G. Knepley   PetscFunctionBegin;
5301e04ae0b4SMatthew G. Knepley   if (!cellIS) goto end;
53029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
53039566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
53049566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
53059566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
53069566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm));
53079566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
53089566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
53099566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
53109566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
53119566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
53129566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
53139566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobian(prob, &hasJac));
53149566063dSJacob Faibussowitsch   PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec));
53153e9753d6SMatthew G. Knepley   /* user passed in the same matrix, avoid double contributions and
53163e9753d6SMatthew G. Knepley      only assemble the Jacobian */
53173e9753d6SMatthew G. Knepley   if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE;
53189566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
53193e9753d6SMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
53209566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
53219a2a23afSMatthew G. Knepley   if (A) {
53229566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
53239566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
53249566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plex));
53259566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plex, &sectionAux));
53269566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
53279566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
53283e9753d6SMatthew G. Knepley   }
53299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD));
53309566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
53319566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
53323e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
53333e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
53343e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
53353e9753d6SMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
53363e9753d6SMatthew G. Knepley     PetscInt       i;
53373e9753d6SMatthew G. Knepley 
53389566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x));
53393e9753d6SMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
53409566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x));
53413e9753d6SMatthew G. Knepley     if (X_t) {
53429566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t));
53433e9753d6SMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
53449566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t));
53453e9753d6SMatthew G. Knepley     }
53463e9753d6SMatthew G. Knepley     if (dmAux) {
53473e9753d6SMatthew G. Knepley       PetscInt subcell;
53489566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
53499566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x));
53503e9753d6SMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
53519566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x));
53523e9753d6SMatthew G. Knepley     }
53533e9753d6SMatthew G. Knepley   }
53549566063dSJacob Faibussowitsch   if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
53559566063dSJacob Faibussowitsch   if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim));
53569566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
53573e9753d6SMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
53583e9753d6SMatthew G. Knepley     PetscClassId    id;
53593e9753d6SMatthew G. Knepley     PetscFE         fe;
53603e9753d6SMatthew G. Knepley     PetscQuadrature qGeom = NULL;
53613e9753d6SMatthew G. Knepley     PetscInt        Nb;
53623e9753d6SMatthew G. Knepley     /* Conforming batches */
53633e9753d6SMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
53643e9753d6SMatthew G. Knepley     /* Remainder */
53653e9753d6SMatthew G. Knepley     PetscInt     Nr, offset, Nq;
53663e9753d6SMatthew G. Knepley     PetscInt     maxDegree;
53673e9753d6SMatthew G. Knepley     PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
53683e9753d6SMatthew G. Knepley 
53699566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
53709566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetClassId((PetscObject)fe, &id));
53719371c9d4SSatish Balay     if (id == PETSCFV_CLASSID) {
53729371c9d4SSatish Balay       hasFV = PETSC_TRUE;
53739371c9d4SSatish Balay       continue;
53749371c9d4SSatish Balay     }
53759566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
53769566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
53779566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
537848a46eb9SPierre Jolivet     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
53793e9753d6SMatthew G. Knepley     if (!qGeom) {
53809566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
53819566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
53823e9753d6SMatthew G. Knepley     }
53839566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
53849566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
53853e9753d6SMatthew G. Knepley     blockSize = Nb;
53863e9753d6SMatthew G. Knepley     batchSize = numBlocks * blockSize;
53879566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
53883e9753d6SMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
53893e9753d6SMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
53903e9753d6SMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
53913e9753d6SMatthew G. Knepley     offset    = numCells - Nr;
53929566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
53939566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
53943e9753d6SMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
53956528b96dSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
53963e9753d6SMatthew G. Knepley       if (hasJac) {
53979566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
53989566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
53993e9753d6SMatthew G. Knepley       }
54003e9753d6SMatthew G. Knepley       if (hasPrec) {
54019566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP));
54029566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatP[offset * totDim * totDim]));
54033e9753d6SMatthew G. Knepley       }
54043e9753d6SMatthew G. Knepley       if (hasDyn) {
54059566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
54069566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
54073e9753d6SMatthew G. Knepley       }
54083e9753d6SMatthew G. Knepley     }
54099566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
54109566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
54119566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
54129566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
54133e9753d6SMatthew G. Knepley   }
54143e9753d6SMatthew G. Knepley   /*   Add contribution from X_t */
54159371c9d4SSatish Balay   if (hasDyn) {
54169371c9d4SSatish Balay     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
54179371c9d4SSatish Balay   }
54183e9753d6SMatthew G. Knepley   if (hasFV) {
54193e9753d6SMatthew G. Knepley     PetscClassId id;
54203e9753d6SMatthew G. Knepley     PetscFV      fv;
54213e9753d6SMatthew G. Knepley     PetscInt     offsetI, NcI, NbI = 1, fc, f;
54223e9753d6SMatthew G. Knepley 
54233e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
54249566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv));
54259566063dSJacob Faibussowitsch       PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI));
54269566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId((PetscObject)fv, &id));
54273e9753d6SMatthew G. Knepley       if (id != PETSCFV_CLASSID) continue;
54283e9753d6SMatthew G. Knepley       /* Put in the identity */
54299566063dSJacob Faibussowitsch       PetscCall(PetscFVGetNumComponents(fv, &NcI));
54303e9753d6SMatthew G. Knepley       for (c = cStart; c < cEnd; ++c) {
54313e9753d6SMatthew G. Knepley         const PetscInt cind    = c - cStart;
54323e9753d6SMatthew G. Knepley         const PetscInt eOffset = cind * totDim * totDim;
54333e9753d6SMatthew G. Knepley         for (fc = 0; fc < NcI; ++fc) {
54343e9753d6SMatthew G. Knepley           for (f = 0; f < NbI; ++f) {
54353e9753d6SMatthew G. Knepley             const PetscInt i = offsetI + f * NcI + fc;
54363e9753d6SMatthew G. Knepley             if (hasPrec) {
5437ad540459SPierre Jolivet               if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0;
54383e9753d6SMatthew G. Knepley               elemMatP[eOffset + i * totDim + i] = 1.0;
54399371c9d4SSatish Balay             } else {
54409371c9d4SSatish Balay               elemMat[eOffset + i * totDim + i] = 1.0;
54419371c9d4SSatish Balay             }
54423e9753d6SMatthew G. Knepley           }
54433e9753d6SMatthew G. Knepley         }
54443e9753d6SMatthew G. Knepley       }
54453e9753d6SMatthew G. Knepley     }
54463e9753d6SMatthew G. Knepley     /* No allocated space for FV stuff, so ignore the zero entries */
54479566063dSJacob Faibussowitsch     PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE));
54483e9753d6SMatthew G. Knepley   }
54493e9753d6SMatthew G. Knepley   /* Insert values into matrix */
54503e9753d6SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
54513e9753d6SMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
54523e9753d6SMatthew G. Knepley     const PetscInt cind = c - cStart;
54533e9753d6SMatthew G. Knepley 
54543e9753d6SMatthew G. Knepley     /* Transform to global basis before insertion in Jacobian */
54559566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim]));
54563e9753d6SMatthew G. Knepley     if (hasPrec) {
54573e9753d6SMatthew G. Knepley       if (hasJac) {
54589566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
54599566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
54603e9753d6SMatthew G. Knepley       }
54619566063dSJacob Faibussowitsch       if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
54629566063dSJacob Faibussowitsch       PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
54633e9753d6SMatthew G. Knepley     } else {
54643e9753d6SMatthew G. Knepley       if (hasJac) {
54659566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
54669566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
54673e9753d6SMatthew G. Knepley       }
54683e9753d6SMatthew G. Knepley     }
54693e9753d6SMatthew G. Knepley   }
54709566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
54719566063dSJacob Faibussowitsch   if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE));
54729566063dSJacob Faibussowitsch   PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD));
54733e9753d6SMatthew G. Knepley   if (dmAux) {
54749566063dSJacob Faibussowitsch     PetscCall(PetscFree(a));
54759566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
54763e9753d6SMatthew G. Knepley   }
54773e9753d6SMatthew G. Knepley   /* Compute boundary integrals */
54789566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user));
54793e9753d6SMatthew G. Knepley   /* Assemble matrix */
54809371c9d4SSatish Balay end : {
5481e04ae0b4SMatthew G. Knepley   PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp;
5482e04ae0b4SMatthew G. Knepley 
5483e04ae0b4SMatthew G. Knepley   PetscCallMPI(MPI_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
54843e9753d6SMatthew G. Knepley   if (hasJac && hasPrec) {
54859566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY));
54869566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY));
54873e9753d6SMatthew G. Knepley   }
5488e04ae0b4SMatthew G. Knepley }
54899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY));
54909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY));
54919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
54923e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
54933e9753d6SMatthew G. Knepley }
54943e9753d6SMatthew G. Knepley 
5495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user)
5496d71ae5a4SJacob Faibussowitsch {
54973e9753d6SMatthew G. Knepley   DM_Plex        *mesh          = (DM_Plex *)dm->data;
54983e9753d6SMatthew G. Knepley   const char     *name          = "Hybrid Jacobian";
5499148442b3SMatthew G. Knepley   DM              dmAux[3]      = {NULL, NULL, NULL};
5500148442b3SMatthew G. Knepley   DMLabel         ghostLabel    = NULL;
55013e9753d6SMatthew G. Knepley   DM              plex          = NULL;
55023e9753d6SMatthew G. Knepley   DM              plexA         = NULL;
5503148442b3SMatthew G. Knepley   PetscDS         ds            = NULL;
5504148442b3SMatthew G. Knepley   PetscDS         dsAux[3]      = {NULL, NULL, NULL};
5505148442b3SMatthew G. Knepley   Vec             locA[3]       = {NULL, NULL, NULL};
55063e9753d6SMatthew G. Knepley   PetscSection    section       = NULL;
5507148442b3SMatthew G. Knepley   PetscSection    sectionAux[3] = {NULL, NULL, NULL};
55083e9753d6SMatthew G. Knepley   DMField         coordField    = NULL;
5509148442b3SMatthew G. Knepley   PetscScalar    *u             = NULL, *u_t, *a[3];
55103e9753d6SMatthew G. Knepley   PetscScalar    *elemMat, *elemMatP;
5511e432b41dSStefano Zampini   PetscSection    globalSection;
55123e9753d6SMatthew G. Knepley   IS              chunkIS;
55133e9753d6SMatthew G. Knepley   const PetscInt *cells;
55143e9753d6SMatthew G. Knepley   PetscInt       *faces;
55153e9753d6SMatthew G. Knepley   PetscInt        cStart, cEnd, numCells;
5516148442b3SMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ, totDim, totDimAux[3], numChunks, cellChunkSize, chunk;
55173e9753d6SMatthew G. Knepley   PetscInt        maxDegree  = PETSC_MAX_INT;
55183e9753d6SMatthew G. Knepley   PetscQuadrature affineQuad = NULL, *quads = NULL;
55193e9753d6SMatthew G. Knepley   PetscFEGeom    *affineGeom = NULL, **geoms = NULL;
5520e432b41dSStefano Zampini   PetscBool       hasBdJac, hasBdPrec;
55213e9753d6SMatthew G. Knepley 
55223e9753d6SMatthew G. Knepley   PetscFunctionBegin;
55235fedec97SMatthew G. Knepley   if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) {
55245fedec97SMatthew G. Knepley     const char *name;
55259566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name));
552663a3b9bcSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part);
55275fedec97SMatthew G. Knepley   }
55289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
55299566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
55309566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
55319566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
55329566063dSJacob Faibussowitsch   PetscCall(DMGetSection(dm, &section));
55339566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
55349566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, "ghost", &ghostLabel));
55351059d808SMatthew G. Knepley   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds));
55369566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(ds, &Nf));
55379566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(ds, &totDim));
55389566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac));
55399566063dSJacob Faibussowitsch   PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec));
55409566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2]));
5541148442b3SMatthew G. Knepley   if (locA[2]) {
55421059d808SMatthew G. Knepley     const PetscInt cellStart = cells ? cells[cStart] : cStart;
55431059d808SMatthew G. Knepley 
55449566063dSJacob Faibussowitsch     PetscCall(VecGetDM(locA[2], &dmAux[2]));
55459566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA));
55469566063dSJacob Faibussowitsch     PetscCall(DMGetSection(dmAux[2], &sectionAux[2]));
55471059d808SMatthew G. Knepley     PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2]));
55489566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2]));
5549148442b3SMatthew G. Knepley     {
5550148442b3SMatthew G. Knepley       const PetscInt *cone;
5551148442b3SMatthew G. Knepley       PetscInt        c;
5552148442b3SMatthew G. Knepley 
55531059d808SMatthew G. Knepley       PetscCall(DMPlexGetCone(dm, cellStart, &cone));
5554148442b3SMatthew G. Knepley       for (c = 0; c < 2; ++c) {
5555148442b3SMatthew G. Knepley         const PetscInt *support;
5556148442b3SMatthew G. Knepley         PetscInt        ssize, s;
5557148442b3SMatthew G. Knepley 
55589566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, cone[c], &support));
55599566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize));
55601059d808SMatthew G. Knepley         PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize);
55611059d808SMatthew G. Knepley         if (support[0] == cellStart) s = 1;
55621059d808SMatthew G. Knepley         else if (support[1] == cellStart) s = 0;
55631059d808SMatthew G. Knepley         else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart);
55649566063dSJacob Faibussowitsch         PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c]));
55659566063dSJacob Faibussowitsch         if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c]));
5566ad540459SPierre Jolivet         else dmAux[c] = dmAux[2];
55679566063dSJacob Faibussowitsch         PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c]));
55689566063dSJacob Faibussowitsch         PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c]));
5569148442b3SMatthew G. Knepley       }
5570148442b3SMatthew G. Knepley     }
55713e9753d6SMatthew G. Knepley   }
55729566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
55739566063dSJacob Faibussowitsch   PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
55743e9753d6SMatthew G. Knepley   if (maxDegree > 1) {
55753e9753d6SMatthew G. Knepley     PetscInt f;
55769566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms));
55773e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
55783e9753d6SMatthew G. Knepley       PetscFE fe;
55793e9753d6SMatthew G. Knepley 
55809566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe));
55813e9753d6SMatthew G. Knepley       if (fe) {
55829566063dSJacob Faibussowitsch         PetscCall(PetscFEGetQuadrature(fe, &quads[f]));
55839566063dSJacob Faibussowitsch         PetscCall(PetscObjectReference((PetscObject)quads[f]));
55843e9753d6SMatthew G. Knepley       }
55853e9753d6SMatthew G. Knepley     }
55863e9753d6SMatthew G. Knepley   }
55873e9753d6SMatthew G. Knepley   cellChunkSize = numCells;
55883e9753d6SMatthew G. Knepley   numChunks     = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize);
5589a4158a15SMatthew G. Knepley   PetscCall(PetscCalloc1(1 * cellChunkSize, &faces));
5590a4158a15SMatthew G. Knepley   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS));
55919566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
55929566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a));
55939566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat));
55949566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP));
55953e9753d6SMatthew G. Knepley   for (chunk = 0; chunk < numChunks; ++chunk) {
55963e9753d6SMatthew G. Knepley     PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c;
55973e9753d6SMatthew G. Knepley 
55989566063dSJacob Faibussowitsch     if (hasBdJac) PetscCall(PetscMemzero(elemMat, numCells * totDim * totDim * sizeof(PetscScalar)));
55999566063dSJacob Faibussowitsch     if (hasBdPrec) PetscCall(PetscMemzero(elemMatP, numCells * totDim * totDim * sizeof(PetscScalar)));
56003e9753d6SMatthew G. Knepley     /* Get faces */
56013e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56023e9753d6SMatthew G. Knepley       const PetscInt  cell = cells ? cells[c] : c;
56033e9753d6SMatthew G. Knepley       const PetscInt *cone;
56049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(plex, cell, &cone));
5605a4158a15SMatthew G. Knepley       faces[0 * cellChunkSize + (c - cS)] = cone[0];
5606a4158a15SMatthew G. Knepley       /*faces[2*cellChunkSize+(c-cS)] = cone[1];*/
56073e9753d6SMatthew G. Knepley     }
5608a4158a15SMatthew G. Knepley     PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER));
56093e9753d6SMatthew G. Knepley     if (maxDegree <= 1) {
56109566063dSJacob Faibussowitsch       if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad));
56119566063dSJacob Faibussowitsch       if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom));
56123e9753d6SMatthew G. Knepley     } else {
56133e9753d6SMatthew G. Knepley       PetscInt f;
56143e9753d6SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
56159566063dSJacob Faibussowitsch         if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f]));
56163e9753d6SMatthew G. Knepley       }
56173e9753d6SMatthew G. Knepley     }
56183e9753d6SMatthew G. Knepley 
56193e9753d6SMatthew G. Knepley     for (fieldI = 0; fieldI < Nf; ++fieldI) {
56203e9753d6SMatthew G. Knepley       PetscFE         feI;
56213e9753d6SMatthew G. Knepley       PetscFEGeom    *geom      = affineGeom ? affineGeom : geoms[fieldI];
56223e9753d6SMatthew G. Knepley       PetscFEGeom    *chunkGeom = NULL, *remGeom = NULL;
56233e9753d6SMatthew G. Knepley       PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI];
56243e9753d6SMatthew G. Knepley       PetscInt        numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb;
56255fedec97SMatthew G. Knepley       PetscBool       isCohesiveField;
56263e9753d6SMatthew G. Knepley 
56279566063dSJacob Faibussowitsch       PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI));
56283e9753d6SMatthew G. Knepley       if (!feI) continue;
56299566063dSJacob Faibussowitsch       PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches));
56309566063dSJacob Faibussowitsch       PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL));
56319566063dSJacob Faibussowitsch       PetscCall(PetscFEGetDimension(feI, &Nb));
56323e9753d6SMatthew G. Knepley       blockSize = Nb;
56333e9753d6SMatthew G. Knepley       batchSize = numBlocks * blockSize;
56349566063dSJacob Faibussowitsch       PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches));
56353e9753d6SMatthew G. Knepley       numChunks = numCells / (numBatches * batchSize);
56363e9753d6SMatthew G. Knepley       Ne        = numChunks * numBatches * batchSize;
56373e9753d6SMatthew G. Knepley       Nr        = numCells % (numBatches * batchSize);
56383e9753d6SMatthew G. Knepley       offset    = numCells - Nr;
56399566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom));
56409566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom));
56419566063dSJacob Faibussowitsch       PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField));
56423e9753d6SMatthew G. Knepley       for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
56433e9753d6SMatthew G. Knepley         PetscFE feJ;
56443e9753d6SMatthew G. Knepley 
56459566063dSJacob Faibussowitsch         PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ));
56463e9753d6SMatthew G. Knepley         if (!feJ) continue;
5647148442b3SMatthew G. Knepley         key[0].field = fieldI * Nf + fieldJ;
5648148442b3SMatthew G. Knepley         key[1].field = fieldI * Nf + fieldJ;
56495fedec97SMatthew G. Knepley         key[2].field = fieldI * Nf + fieldJ;
5650148442b3SMatthew G. Knepley         if (hasBdJac) {
56519566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMat));
56529566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMat[offset * totDim * totDim]));
56539566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMat));
56549566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMat[offset * totDim * totDim]));
5655148442b3SMatthew G. Knepley         }
5656148442b3SMatthew G. Knepley         if (hasBdPrec) {
56579566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatP));
56589566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
56599566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatP));
56609566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
5661148442b3SMatthew G. Knepley         }
56625fedec97SMatthew G. Knepley         if (hasBdJac) {
56639566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMat));
56649566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMat[offset * totDim * totDim]));
5665148442b3SMatthew G. Knepley         }
56665fedec97SMatthew G. Knepley         if (hasBdPrec) {
56679566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatP));
56689566063dSJacob Faibussowitsch           PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatP[offset * totDim * totDim]));
56693e9753d6SMatthew G. Knepley         }
56703e9753d6SMatthew G. Knepley       }
56719566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom));
56729566063dSJacob Faibussowitsch       PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom));
56733e9753d6SMatthew G. Knepley     }
56743e9753d6SMatthew G. Knepley     /* Insert values into matrix */
56753e9753d6SMatthew G. Knepley     for (c = cS; c < cE; ++c) {
56763e9753d6SMatthew G. Knepley       const PetscInt cell = cells ? cells[c] : c;
56773e9753d6SMatthew G. Knepley       const PetscInt cind = c - cS;
56783e9753d6SMatthew G. Knepley 
56793e9753d6SMatthew G. Knepley       if (hasBdPrec) {
56803e9753d6SMatthew G. Knepley         if (hasBdJac) {
56819566063dSJacob Faibussowitsch           if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
56829566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
56833e9753d6SMatthew G. Knepley         }
56849566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim]));
56859566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES));
56863e9753d6SMatthew G. Knepley       } else if (hasBdJac) {
56879566063dSJacob Faibussowitsch         if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
56889566063dSJacob Faibussowitsch         PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES));
56893e9753d6SMatthew G. Knepley       }
56903e9753d6SMatthew G. Knepley     }
56913e9753d6SMatthew G. Knepley   }
56929566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2]));
56939566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a));
56949566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat));
56959566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP));
56969566063dSJacob Faibussowitsch   PetscCall(PetscFree(faces));
56979566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&chunkIS));
56989566063dSJacob Faibussowitsch   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
56993e9753d6SMatthew G. Knepley   if (maxDegree <= 1) {
57009566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom));
57019566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&affineQuad));
57023e9753d6SMatthew G. Knepley   } else {
57033e9753d6SMatthew G. Knepley     PetscInt f;
57043e9753d6SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
57059566063dSJacob Faibussowitsch       if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f]));
57069566063dSJacob Faibussowitsch       if (quads) PetscCall(PetscQuadratureDestroy(&quads[f]));
57073e9753d6SMatthew G. Knepley     }
57089566063dSJacob Faibussowitsch     PetscCall(PetscFree2(quads, geoms));
57093e9753d6SMatthew G. Knepley   }
57109566063dSJacob Faibussowitsch   if (dmAux[2]) PetscCall(DMDestroy(&plexA));
57119566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
57129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57133e9753d6SMatthew G. Knepley   PetscFunctionReturn(0);
57143e9753d6SMatthew G. Knepley }
57158e3a2eefSMatthew G. Knepley 
57168e3a2eefSMatthew G. Knepley /*
57178e3a2eefSMatthew G. Knepley   DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user.
57188e3a2eefSMatthew G. Knepley 
57198e3a2eefSMatthew G. Knepley   Input Parameters:
57208e3a2eefSMatthew G. Knepley + dm     - The mesh
57218e3a2eefSMatthew G. Knepley . key    - The PetscWeakFormKey indcating where integration should happen
572206ad1575SMatthew G. Knepley . cellIS - The cells to integrate over
57238e3a2eefSMatthew G. Knepley . t      - The time
57248e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t
57258e3a2eefSMatthew G. Knepley . X      - Local solution vector
57268e3a2eefSMatthew G. Knepley . X_t    - Time-derivative of the local solution vector
57278e3a2eefSMatthew G. Knepley . Y      - Local input vector
572806ad1575SMatthew G. Knepley - user   - the user context
57298e3a2eefSMatthew G. Knepley 
57308e3a2eefSMatthew G. Knepley   Output Parameter:
57318e3a2eefSMatthew G. Knepley . Z - Local output vector
57328e3a2eefSMatthew G. Knepley 
57338e3a2eefSMatthew G. Knepley   Note:
57348e3a2eefSMatthew G. Knepley   We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator,
57358e3a2eefSMatthew G. Knepley   like a GPU, or vectorize on a multicore machine.
57368e3a2eefSMatthew G. Knepley */
5737d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user)
5738d71ae5a4SJacob Faibussowitsch {
57398e3a2eefSMatthew G. Knepley   DM_Plex        *mesh  = (DM_Plex *)dm->data;
57408e3a2eefSMatthew G. Knepley   const char     *name  = "Jacobian";
57418e3a2eefSMatthew G. Knepley   DM              dmAux = NULL, plex, plexAux = NULL;
57428e3a2eefSMatthew G. Knepley   DMEnclosureType encAux;
57438e3a2eefSMatthew G. Knepley   Vec             A;
57448e3a2eefSMatthew G. Knepley   DMField         coordField;
57458e3a2eefSMatthew G. Knepley   PetscDS         prob, probAux = NULL;
57468e3a2eefSMatthew G. Knepley   PetscQuadrature quad;
57478e3a2eefSMatthew G. Knepley   PetscSection    section, globalSection, sectionAux;
57488e3a2eefSMatthew G. Knepley   PetscScalar    *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z;
57498e3a2eefSMatthew G. Knepley   const PetscInt *cells;
57508e3a2eefSMatthew G. Knepley   PetscInt        Nf, fieldI, fieldJ;
57518e3a2eefSMatthew G. Knepley   PetscInt        totDim, totDimAux = 0, cStart, cEnd, numCells, c;
57528e3a2eefSMatthew G. Knepley   PetscBool       hasDyn;
57538e3a2eefSMatthew G. Knepley 
57548e3a2eefSMatthew G. Knepley   PetscFunctionBegin;
57559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0));
57569566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
57578e3a2eefSMatthew G. Knepley   if (!cellIS) {
57588e3a2eefSMatthew G. Knepley     PetscInt depth;
57598e3a2eefSMatthew G. Knepley 
57609566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
57619566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS));
57629566063dSJacob Faibussowitsch     if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS));
57638e3a2eefSMatthew G. Knepley   } else {
57649566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)cellIS));
57658e3a2eefSMatthew G. Knepley   }
57669566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(cellIS, &numCells));
57679566063dSJacob Faibussowitsch   PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells));
57689566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
57699566063dSJacob Faibussowitsch   PetscCall(DMGetGlobalSection(dm, &globalSection));
57709566063dSJacob Faibussowitsch   PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob));
57719566063dSJacob Faibussowitsch   PetscCall(PetscDSGetNumFields(prob, &Nf));
57729566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTotalDimension(prob, &totDim));
57739566063dSJacob Faibussowitsch   PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn));
57748e3a2eefSMatthew G. Knepley   hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE;
57759566063dSJacob Faibussowitsch   PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A));
57768e3a2eefSMatthew G. Knepley   if (A) {
57779566063dSJacob Faibussowitsch     PetscCall(VecGetDM(A, &dmAux));
57789566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux));
57799566063dSJacob Faibussowitsch     PetscCall(DMConvert(dmAux, DMPLEX, &plexAux));
57809566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(plexAux, &sectionAux));
57819566063dSJacob Faibussowitsch     PetscCall(DMGetDS(dmAux, &probAux));
57829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux));
57838e3a2eefSMatthew G. Knepley   }
57849566063dSJacob Faibussowitsch   PetscCall(VecSet(Z, 0.0));
57859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z));
57869566063dSJacob Faibussowitsch   if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a));
57879566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateField(dm, &coordField));
57888e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
57898e3a2eefSMatthew G. Knepley     const PetscInt cell = cells ? cells[c] : c;
57908e3a2eefSMatthew G. Knepley     const PetscInt cind = c - cStart;
57918e3a2eefSMatthew G. Knepley     PetscScalar   *x = NULL, *x_t = NULL;
57928e3a2eefSMatthew G. Knepley     PetscInt       i;
57938e3a2eefSMatthew G. Knepley 
57949566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x));
57958e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i];
57969566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x));
57978e3a2eefSMatthew G. Knepley     if (X_t) {
57989566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t));
57998e3a2eefSMatthew G. Knepley       for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i];
58009566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t));
58018e3a2eefSMatthew G. Knepley     }
58028e3a2eefSMatthew G. Knepley     if (dmAux) {
58038e3a2eefSMatthew G. Knepley       PetscInt subcell;
58049566063dSJacob Faibussowitsch       PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell));
58059566063dSJacob Faibussowitsch       PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x));
58068e3a2eefSMatthew G. Knepley       for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i];
58079566063dSJacob Faibussowitsch       PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x));
58088e3a2eefSMatthew G. Knepley     }
58099566063dSJacob Faibussowitsch     PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x));
58108e3a2eefSMatthew G. Knepley     for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i];
58119566063dSJacob Faibussowitsch     PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x));
58128e3a2eefSMatthew G. Knepley   }
58139566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim));
58149566063dSJacob Faibussowitsch   if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim));
58158e3a2eefSMatthew G. Knepley   for (fieldI = 0; fieldI < Nf; ++fieldI) {
58168e3a2eefSMatthew G. Knepley     PetscFE  fe;
58178e3a2eefSMatthew G. Knepley     PetscInt Nb;
58188e3a2eefSMatthew G. Knepley     /* Conforming batches */
58198e3a2eefSMatthew G. Knepley     PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize;
58208e3a2eefSMatthew G. Knepley     /* Remainder */
58218e3a2eefSMatthew G. Knepley     PetscInt        Nr, offset, Nq;
58228e3a2eefSMatthew G. Knepley     PetscQuadrature qGeom = NULL;
58238e3a2eefSMatthew G. Knepley     PetscInt        maxDegree;
58248e3a2eefSMatthew G. Knepley     PetscFEGeom    *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL;
58258e3a2eefSMatthew G. Knepley 
58269566063dSJacob Faibussowitsch     PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe));
58279566063dSJacob Faibussowitsch     PetscCall(PetscFEGetQuadrature(fe, &quad));
58289566063dSJacob Faibussowitsch     PetscCall(PetscFEGetDimension(fe, &Nb));
58299566063dSJacob Faibussowitsch     PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches));
58309566063dSJacob Faibussowitsch     PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree));
58319566063dSJacob Faibussowitsch     if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom));
58328e3a2eefSMatthew G. Knepley     if (!qGeom) {
58339566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &qGeom));
58349566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)qGeom));
58358e3a2eefSMatthew G. Knepley     }
58369566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL));
58379566063dSJacob Faibussowitsch     PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58388e3a2eefSMatthew G. Knepley     blockSize = Nb;
58398e3a2eefSMatthew G. Knepley     batchSize = numBlocks * blockSize;
58409566063dSJacob Faibussowitsch     PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches));
58418e3a2eefSMatthew G. Knepley     numChunks = numCells / (numBatches * batchSize);
58428e3a2eefSMatthew G. Knepley     Ne        = numChunks * numBatches * batchSize;
58438e3a2eefSMatthew G. Knepley     Nr        = numCells % (numBatches * batchSize);
58448e3a2eefSMatthew G. Knepley     offset    = numCells - Nr;
58459566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom));
58469566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom));
58478e3a2eefSMatthew G. Knepley     for (fieldJ = 0; fieldJ < Nf; ++fieldJ) {
58488e3a2eefSMatthew G. Knepley       key.field = fieldI * Nf + fieldJ;
58499566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat));
58509566063dSJacob Faibussowitsch       PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim]));
58518e3a2eefSMatthew G. Knepley       if (hasDyn) {
58529566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD));
58539566063dSJacob Faibussowitsch         PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim]));
58548e3a2eefSMatthew G. Knepley       }
58558e3a2eefSMatthew G. Knepley     }
58569566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom));
58579566063dSJacob Faibussowitsch     PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom));
58589566063dSJacob Faibussowitsch     PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM));
58599566063dSJacob Faibussowitsch     PetscCall(PetscQuadratureDestroy(&qGeom));
58608e3a2eefSMatthew G. Knepley   }
58618e3a2eefSMatthew G. Knepley   if (hasDyn) {
58628e3a2eefSMatthew G. Knepley     for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c];
58638e3a2eefSMatthew G. Knepley   }
58648e3a2eefSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
58658e3a2eefSMatthew G. Knepley     const PetscInt     cell = cells ? cells[c] : c;
58668e3a2eefSMatthew G. Knepley     const PetscInt     cind = c - cStart;
58678e3a2eefSMatthew G. Knepley     const PetscBLASInt M = totDim, one = 1;
58688e3a2eefSMatthew G. Knepley     const PetscScalar  a = 1.0, b = 0.0;
58698e3a2eefSMatthew G. Knepley 
5870792fecdfSBarry Smith     PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one));
58718e3a2eefSMatthew G. Knepley     if (mesh->printFEM > 1) {
58729566063dSJacob Faibussowitsch       PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim]));
58739566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim]));
58749566063dSJacob Faibussowitsch       PetscCall(DMPrintCellVector(c, "Z", totDim, z));
58758e3a2eefSMatthew G. Knepley     }
58769566063dSJacob Faibussowitsch     PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES));
58778e3a2eefSMatthew G. Knepley   }
58789566063dSJacob Faibussowitsch   PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z));
58798e3a2eefSMatthew G. Knepley   if (mesh->printFEM) {
58809566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n"));
58819566063dSJacob Faibussowitsch     PetscCall(VecView(Z, NULL));
58828e3a2eefSMatthew G. Knepley   }
58831059d808SMatthew G. Knepley   PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells));
58849566063dSJacob Faibussowitsch   PetscCall(PetscFree(a));
58859566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
58869566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexAux));
58879566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plex));
58889566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0));
58898e3a2eefSMatthew G. Knepley   PetscFunctionReturn(0);
58908e3a2eefSMatthew G. Knepley }
5891