1cb1e1211SMatthew G Knepley #include <petsc-private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2*da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 40f2d7e86SMatthew G. Knepley #include <petsc-private/petscfeimpl.h> 515496722SMatthew G. Knepley #include <petsc-private/petscfvimpl.h> 6a0845e3aSMatthew G. Knepley 7cb1e1211SMatthew G Knepley #undef __FUNCT__ 8cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexGetScale" 9cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 10cb1e1211SMatthew G Knepley { 11cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 12cb1e1211SMatthew G Knepley 13cb1e1211SMatthew G Knepley PetscFunctionBegin; 14cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 16cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 17cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 18cb1e1211SMatthew G Knepley } 19cb1e1211SMatthew G Knepley 20cb1e1211SMatthew G Knepley #undef __FUNCT__ 21cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexSetScale" 22cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 23cb1e1211SMatthew G Knepley { 24cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 25cb1e1211SMatthew G Knepley 26cb1e1211SMatthew G Knepley PetscFunctionBegin; 27cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 29cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 30cb1e1211SMatthew G Knepley } 31cb1e1211SMatthew G Knepley 32cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 33cb1e1211SMatthew G Knepley { 34cb1e1211SMatthew G Knepley switch (i) { 35cb1e1211SMatthew G Knepley case 0: 36cb1e1211SMatthew G Knepley switch (j) { 37cb1e1211SMatthew G Knepley case 0: return 0; 38cb1e1211SMatthew G Knepley case 1: 39cb1e1211SMatthew G Knepley switch (k) { 40cb1e1211SMatthew G Knepley case 0: return 0; 41cb1e1211SMatthew G Knepley case 1: return 0; 42cb1e1211SMatthew G Knepley case 2: return 1; 43cb1e1211SMatthew G Knepley } 44cb1e1211SMatthew G Knepley case 2: 45cb1e1211SMatthew G Knepley switch (k) { 46cb1e1211SMatthew G Knepley case 0: return 0; 47cb1e1211SMatthew G Knepley case 1: return -1; 48cb1e1211SMatthew G Knepley case 2: return 0; 49cb1e1211SMatthew G Knepley } 50cb1e1211SMatthew G Knepley } 51cb1e1211SMatthew G Knepley case 1: 52cb1e1211SMatthew G Knepley switch (j) { 53cb1e1211SMatthew G Knepley case 0: 54cb1e1211SMatthew G Knepley switch (k) { 55cb1e1211SMatthew G Knepley case 0: return 0; 56cb1e1211SMatthew G Knepley case 1: return 0; 57cb1e1211SMatthew G Knepley case 2: return -1; 58cb1e1211SMatthew G Knepley } 59cb1e1211SMatthew G Knepley case 1: return 0; 60cb1e1211SMatthew G Knepley case 2: 61cb1e1211SMatthew G Knepley switch (k) { 62cb1e1211SMatthew G Knepley case 0: return 1; 63cb1e1211SMatthew G Knepley case 1: return 0; 64cb1e1211SMatthew G Knepley case 2: return 0; 65cb1e1211SMatthew G Knepley } 66cb1e1211SMatthew G Knepley } 67cb1e1211SMatthew G Knepley case 2: 68cb1e1211SMatthew G Knepley switch (j) { 69cb1e1211SMatthew G Knepley case 0: 70cb1e1211SMatthew G Knepley switch (k) { 71cb1e1211SMatthew G Knepley case 0: return 0; 72cb1e1211SMatthew G Knepley case 1: return 1; 73cb1e1211SMatthew G Knepley case 2: return 0; 74cb1e1211SMatthew G Knepley } 75cb1e1211SMatthew G Knepley case 1: 76cb1e1211SMatthew G Knepley switch (k) { 77cb1e1211SMatthew G Knepley case 0: return -1; 78cb1e1211SMatthew G Knepley case 1: return 0; 79cb1e1211SMatthew G Knepley case 2: return 0; 80cb1e1211SMatthew G Knepley } 81cb1e1211SMatthew G Knepley case 2: return 0; 82cb1e1211SMatthew G Knepley } 83cb1e1211SMatthew G Knepley } 84cb1e1211SMatthew G Knepley return 0; 85cb1e1211SMatthew G Knepley } 86cb1e1211SMatthew G Knepley 87cb1e1211SMatthew G Knepley #undef __FUNCT__ 88cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexCreateRigidBody" 89cb1e1211SMatthew G Knepley /*@C 90cb1e1211SMatthew G Knepley DMPlexCreateRigidBody - create rigid body modes from coordinates 91cb1e1211SMatthew G Knepley 92cb1e1211SMatthew G Knepley Collective on DM 93cb1e1211SMatthew G Knepley 94cb1e1211SMatthew G Knepley Input Arguments: 95cb1e1211SMatthew G Knepley + dm - the DM 96cb1e1211SMatthew G Knepley . section - the local section associated with the rigid field, or NULL for the default section 97cb1e1211SMatthew G Knepley - globalSection - the global section associated with the rigid field, or NULL for the default section 98cb1e1211SMatthew G Knepley 99cb1e1211SMatthew G Knepley Output Argument: 100cb1e1211SMatthew G Knepley . sp - the null space 101cb1e1211SMatthew G Knepley 102cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 103cb1e1211SMatthew G Knepley 104cb1e1211SMatthew G Knepley Level: advanced 105cb1e1211SMatthew G Knepley 106cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 107cb1e1211SMatthew G Knepley @*/ 108cb1e1211SMatthew G Knepley PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscSection section, PetscSection globalSection, MatNullSpace *sp) 109cb1e1211SMatthew G Knepley { 110cb1e1211SMatthew G Knepley MPI_Comm comm; 111cb1e1211SMatthew G Knepley Vec coordinates, localMode, mode[6]; 112cb1e1211SMatthew G Knepley PetscSection coordSection; 113cb1e1211SMatthew G Knepley PetscScalar *coords; 114cb1e1211SMatthew G Knepley PetscInt dim, vStart, vEnd, v, n, m, d, i, j; 115cb1e1211SMatthew G Knepley PetscErrorCode ierr; 116cb1e1211SMatthew G Knepley 117cb1e1211SMatthew G Knepley PetscFunctionBegin; 118cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 119c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 120cb1e1211SMatthew G Knepley if (dim == 1) { 121cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 122cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 123cb1e1211SMatthew G Knepley } 124cb1e1211SMatthew G Knepley if (!section) {ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr);} 125cb1e1211SMatthew G Knepley if (!globalSection) {ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr);} 126cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 127cb1e1211SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 12869d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 129cb1e1211SMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 130cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 131cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 132cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 133cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 134cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 135cb1e1211SMatthew G Knepley /* Assume P1 */ 136cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localMode);CHKERRQ(ierr); 137cb1e1211SMatthew G Knepley for (d = 0; d < dim; ++d) { 138cb1e1211SMatthew G Knepley PetscScalar values[3] = {0.0, 0.0, 0.0}; 139cb1e1211SMatthew G Knepley 140cb1e1211SMatthew G Knepley values[d] = 1.0; 141cb1e1211SMatthew G Knepley ierr = VecSet(localMode, 0.0);CHKERRQ(ierr); 142cb1e1211SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 143cb1e1211SMatthew G Knepley ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr); 144cb1e1211SMatthew G Knepley } 145cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 146cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 147cb1e1211SMatthew G Knepley } 148cb1e1211SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 149cb1e1211SMatthew G Knepley for (d = dim; d < dim*(dim+1)/2; ++d) { 150cb1e1211SMatthew G Knepley PetscInt i, j, k = dim > 2 ? d - dim : d; 151cb1e1211SMatthew G Knepley 152cb1e1211SMatthew G Knepley ierr = VecSet(localMode, 0.0);CHKERRQ(ierr); 153cb1e1211SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 154cb1e1211SMatthew G Knepley PetscScalar values[3] = {0.0, 0.0, 0.0}; 155cb1e1211SMatthew G Knepley PetscInt off; 156cb1e1211SMatthew G Knepley 157cb1e1211SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr); 158cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) { 159cb1e1211SMatthew G Knepley for (j = 0; j < dim; ++j) { 160cb1e1211SMatthew G Knepley values[j] += epsilon(i, j, k)*PetscRealPart(coords[off+i]); 161cb1e1211SMatthew G Knepley } 162cb1e1211SMatthew G Knepley } 163cb1e1211SMatthew G Knepley ierr = DMPlexVecSetClosure(dm, section, localMode, v, values, INSERT_VALUES);CHKERRQ(ierr); 164cb1e1211SMatthew G Knepley } 165cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalBegin(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 166cb1e1211SMatthew G Knepley ierr = DMLocalToGlobalEnd(dm, localMode, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 167cb1e1211SMatthew G Knepley } 168cb1e1211SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 169cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localMode);CHKERRQ(ierr); 170cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 171cb1e1211SMatthew G Knepley /* Orthonormalize system */ 172cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 173cb1e1211SMatthew G Knepley PetscScalar dots[6]; 174cb1e1211SMatthew G Knepley 175cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 176cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 177cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 178cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 179cb1e1211SMatthew G Knepley } 180cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 181cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 182cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 183cb1e1211SMatthew G Knepley } 184cb1e1211SMatthew G Knepley 185cb1e1211SMatthew G Knepley #undef __FUNCT__ 186a18a7fb9SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFunctionLabelLocal" 187bf3434eeSMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLabelLocal(DM dm, DMLabel label, PetscInt numIds, const PetscInt ids[], void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 188a18a7fb9SMatthew G. Knepley { 189bf3434eeSMatthew G. Knepley PetscFE fe; 190a18a7fb9SMatthew G. Knepley PetscDualSpace *sp; 191a18a7fb9SMatthew G. Knepley PetscSection section; 192a18a7fb9SMatthew G. Knepley PetscScalar *values; 193ad96f515SMatthew G. Knepley PetscBool *fieldActive; 194a18a7fb9SMatthew G. Knepley PetscInt numFields, numComp, dim, spDim, totDim = 0, numValues, cStart, cEnd, f, d, v, i, comp; 195a18a7fb9SMatthew G. Knepley PetscErrorCode ierr; 196a18a7fb9SMatthew G. Knepley 197a18a7fb9SMatthew G. Knepley PetscFunctionBegin; 19856ad4130SToby Isaac ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 19956ad4130SToby Isaac if (cEnd <= cStart) PetscFunctionReturn(0); 200c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 201a18a7fb9SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 202a18a7fb9SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 203e1d0b1adSMatthew G. Knepley ierr = PetscMalloc1(numFields,&sp);CHKERRQ(ierr); 204a18a7fb9SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 205bf3434eeSMatthew G. Knepley ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr); 206bf3434eeSMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &sp[f]);CHKERRQ(ierr); 207bf3434eeSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr); 208a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 209a18a7fb9SMatthew G. Knepley totDim += spDim*numComp; 210a18a7fb9SMatthew G. Knepley } 211a18a7fb9SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr); 212a18a7fb9SMatthew G. Knepley if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim); 213a18a7fb9SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 214ad96f515SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 215ad96f515SMatthew G. Knepley for (f = 0; f < numFields; ++f) fieldActive[f] = funcs[f] ? PETSC_TRUE : PETSC_FALSE; 216a18a7fb9SMatthew G. Knepley for (i = 0; i < numIds; ++i) { 217a18a7fb9SMatthew G. Knepley IS pointIS; 218a18a7fb9SMatthew G. Knepley const PetscInt *points; 219a18a7fb9SMatthew G. Knepley PetscInt n, p; 220a18a7fb9SMatthew G. Knepley 221a18a7fb9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &pointIS);CHKERRQ(ierr); 222a18a7fb9SMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &n);CHKERRQ(ierr); 223a18a7fb9SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 224a18a7fb9SMatthew G. Knepley for (p = 0; p < n; ++p) { 225a18a7fb9SMatthew G. Knepley const PetscInt point = points[p]; 226e1d0b1adSMatthew G. Knepley PetscFECellGeom geom; 227a18a7fb9SMatthew G. Knepley 228a18a7fb9SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 229e1d0b1adSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, point, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr); 230a18a7fb9SMatthew G. Knepley for (f = 0, v = 0; f < numFields; ++f) { 231a18a7fb9SMatthew G. Knepley void * const ctx = ctxs ? ctxs[f] : NULL; 232bf3434eeSMatthew G. Knepley 233bf3434eeSMatthew G. Knepley ierr = DMGetField(dm, f, (PetscObject *) &fe);CHKERRQ(ierr); 234bf3434eeSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp);CHKERRQ(ierr); 235a18a7fb9SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 236a18a7fb9SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 237a18a7fb9SMatthew G. Knepley if (funcs[f]) { 238e1d0b1adSMatthew G. Knepley ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp, funcs[f], ctx, &values[v]);CHKERRQ(ierr); 239a18a7fb9SMatthew G. Knepley } else { 240a18a7fb9SMatthew G. Knepley for (comp = 0; comp < numComp; ++comp) values[v+comp] = 0.0; 241a18a7fb9SMatthew G. Knepley } 242a18a7fb9SMatthew G. Knepley v += numComp; 243a18a7fb9SMatthew G. Knepley } 244a18a7fb9SMatthew G. Knepley } 245ad96f515SMatthew G. Knepley ierr = DMPlexVecSetFieldClosure_Internal(dm, section, localX, fieldActive, point, values, mode);CHKERRQ(ierr); 246a18a7fb9SMatthew G. Knepley } 247a18a7fb9SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 248a18a7fb9SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 249a18a7fb9SMatthew G. Knepley } 250a18a7fb9SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 251ad96f515SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numFields, PETSC_BOOL, &fieldActive);CHKERRQ(ierr); 252e1d0b1adSMatthew G. Knepley ierr = PetscFree(sp);CHKERRQ(ierr); 253a18a7fb9SMatthew G. Knepley PetscFunctionReturn(0); 254a18a7fb9SMatthew G. Knepley } 255a18a7fb9SMatthew G. Knepley 256a18a7fb9SMatthew G. Knepley #undef __FUNCT__ 257cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexProjectFunctionLocal" 2580f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexProjectFunctionLocal(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 259cb1e1211SMatthew G Knepley { 26072f94c41SMatthew G. Knepley PetscDualSpace *sp; 26115496722SMatthew G. Knepley PetscInt *numComp; 26272f94c41SMatthew G. Knepley PetscSection section; 26372f94c41SMatthew G. Knepley PetscScalar *values; 26415496722SMatthew G. Knepley PetscInt numFields, dim, spDim, totDim = 0, numValues, cStart, cEnd, c, f, d, v, comp; 265cb1e1211SMatthew G Knepley PetscErrorCode ierr; 266cb1e1211SMatthew G Knepley 267cb1e1211SMatthew G Knepley PetscFunctionBegin; 26856ad4130SToby Isaac ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 26956ad4130SToby Isaac if (cEnd <= cStart) PetscFunctionReturn(0); 270cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 27172f94c41SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 27215496722SMatthew G. Knepley ierr = PetscMalloc2(numFields, &sp, numFields, &numComp);CHKERRQ(ierr); 27372f94c41SMatthew G. Knepley for (f = 0; f < numFields; ++f) { 27415496722SMatthew G. Knepley PetscObject obj; 27515496722SMatthew G. Knepley PetscClassId id; 2760f2d7e86SMatthew G. Knepley 27715496722SMatthew G. Knepley ierr = DMGetField(dm, f, &obj);CHKERRQ(ierr); 27815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 27915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28015496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 28115496722SMatthew G. Knepley 28215496722SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &numComp[f]);CHKERRQ(ierr); 2830f2d7e86SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &sp[f]);CHKERRQ(ierr); 28415496722SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) sp[f]);CHKERRQ(ierr); 28515496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 28615496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 28715496722SMatthew G. Knepley PetscQuadrature q; 28815496722SMatthew G. Knepley 28915496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp[f]);CHKERRQ(ierr); 29015496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &q);CHKERRQ(ierr); 29115496722SMatthew G. Knepley ierr = PetscDualSpaceCreate(PetscObjectComm((PetscObject) fv), &sp[f]);CHKERRQ(ierr); 29215496722SMatthew G. Knepley ierr = PetscDualSpaceSetDM(sp[f], dm);CHKERRQ(ierr); 29315496722SMatthew G. Knepley ierr = PetscDualSpaceSetType(sp[f], PETSCDUALSPACESIMPLE);CHKERRQ(ierr); 29415496722SMatthew G. Knepley ierr = PetscDualSpaceSimpleSetDimension(sp[f], 1);CHKERRQ(ierr); 29515496722SMatthew G. Knepley ierr = PetscDualSpaceSimpleSetFunctional(sp[f], 0, q);CHKERRQ(ierr); 29615496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 29772f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 29815496722SMatthew G. Knepley totDim += spDim*numComp[f]; 299cb1e1211SMatthew G Knepley } 300c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 30172f94c41SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr); 30272f94c41SMatthew G. Knepley if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim); 30372f94c41SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 30472f94c41SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 305e1d0b1adSMatthew G. Knepley PetscFECellGeom geom; 306cb1e1211SMatthew G Knepley 307e1d0b1adSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, geom.v0, geom.J, NULL, &geom.detJ);CHKERRQ(ierr); 30872f94c41SMatthew G. Knepley for (f = 0, v = 0; f < numFields; ++f) { 309c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[f] : NULL; 3100f2d7e86SMatthew G. Knepley 31172f94c41SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp[f], &spDim);CHKERRQ(ierr); 31272f94c41SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 313120386c5SMatthew G. Knepley if (funcs[f]) { 314e1d0b1adSMatthew G. Knepley ierr = PetscDualSpaceApply(sp[f], d, &geom, numComp[f], funcs[f], ctx, &values[v]);CHKERRQ(ierr); 315120386c5SMatthew G. Knepley } else { 31615496722SMatthew G. Knepley for (comp = 0; comp < numComp[f]; ++comp) values[v+comp] = 0.0; 317120386c5SMatthew G. Knepley } 31815496722SMatthew G. Knepley v += numComp[f]; 319cb1e1211SMatthew G Knepley } 320cb1e1211SMatthew G Knepley } 32172f94c41SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr); 322cb1e1211SMatthew G Knepley } 32372f94c41SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 32415496722SMatthew G. Knepley for (f = 0; f < numFields; ++f) {ierr = PetscDualSpaceDestroy(&sp[f]);CHKERRQ(ierr);} 32515496722SMatthew G. Knepley ierr = PetscFree2(sp, numComp);CHKERRQ(ierr); 326cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 327cb1e1211SMatthew G Knepley } 328cb1e1211SMatthew G Knepley 329cb1e1211SMatthew G Knepley #undef __FUNCT__ 3300f2d7e86SMatthew G. Knepley #define __FUNCT__ "DMPlexProjectFieldLocal" 3313bc3b0a0SMatthew G. Knepley PetscErrorCode DMPlexProjectFieldLocal(DM dm, Vec localU, void (**funcs)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode mode, Vec localX) 3320f2d7e86SMatthew G. Knepley { 3330f2d7e86SMatthew G. Knepley DM dmAux; 3342764a2aaSMatthew G. Knepley PetscDS prob, probAux; 3350f2d7e86SMatthew G. Knepley Vec A; 336326413afSMatthew G. Knepley PetscSection section, sectionAux; 337326413afSMatthew G. Knepley PetscScalar *values, *u, *u_x, *a, *a_x; 3380f2d7e86SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ, **basisField, **basisFieldDer, **basisFieldAux, **basisFieldDerAux; 339326413afSMatthew G. Knepley PetscInt Nf, dim, spDim, totDim, numValues, cStart, cEnd, c, f, d, v, comp; 3400f2d7e86SMatthew G. Knepley PetscErrorCode ierr; 3410f2d7e86SMatthew G. Knepley 3420f2d7e86SMatthew G. Knepley PetscFunctionBegin; 3432764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 344c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3450f2d7e86SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 3460f2d7e86SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 3470f2d7e86SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 3482764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 3492764a2aaSMatthew G. Knepley ierr = PetscDSGetTabulation(prob, &basisField, &basisFieldDer);CHKERRQ(ierr); 3502764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(prob, &u, NULL, &u_x);CHKERRQ(ierr); 3512764a2aaSMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 3520f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3530f2d7e86SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3540f2d7e86SMatthew G. Knepley if (dmAux) { 3552764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 356326413afSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 3572764a2aaSMatthew G. Knepley ierr = PetscDSGetTabulation(prob, &basisFieldAux, &basisFieldDerAux);CHKERRQ(ierr); 3582764a2aaSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, &a_x);CHKERRQ(ierr); 3590f2d7e86SMatthew G. Knepley } 360d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, localU, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 3610f2d7e86SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, cStart, &numValues, NULL);CHKERRQ(ierr); 3620f2d7e86SMatthew G. Knepley if (numValues != totDim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The section cell closure size %d != dual space dimension %d", numValues, totDim); 3630f2d7e86SMatthew G. Knepley ierr = DMGetWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 3640f2d7e86SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 3650f2d7e86SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 366326413afSMatthew G. Knepley PetscScalar *coefficients = NULL, *coefficientsAux = NULL; 367326413afSMatthew G. Knepley 3688e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 369326413afSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 370326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 3710f2d7e86SMatthew G. Knepley for (f = 0, v = 0; f < Nf; ++f) { 3723113607cSMatthew G. Knepley PetscFE fe; 3733113607cSMatthew G. Knepley PetscDualSpace sp; 3743113607cSMatthew G. Knepley PetscInt Ncf; 3753113607cSMatthew G. Knepley 3762764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 3773113607cSMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &sp);CHKERRQ(ierr); 3783113607cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncf);CHKERRQ(ierr); 3793113607cSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(sp, &spDim);CHKERRQ(ierr); 3800f2d7e86SMatthew G. Knepley for (d = 0; d < spDim; ++d) { 3810f2d7e86SMatthew G. Knepley PetscQuadrature quad; 3820f2d7e86SMatthew G. Knepley const PetscReal *points, *weights; 3830f2d7e86SMatthew G. Knepley PetscInt numPoints, q; 3840f2d7e86SMatthew G. Knepley 3850f2d7e86SMatthew G. Knepley if (funcs[f]) { 3863113607cSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(sp, d, &quad);CHKERRQ(ierr); 3870f2d7e86SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numPoints, &points, &weights);CHKERRQ(ierr); 3883113607cSMatthew G. Knepley ierr = PetscFEGetTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr); 3890f2d7e86SMatthew G. Knepley for (q = 0; q < numPoints; ++q) { 3900f2d7e86SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &points[q*dim], x); 391326413afSMatthew G. Knepley ierr = EvaluateFieldJets(prob, PETSC_FALSE, q, invJ, coefficients, NULL, u, u_x, NULL);CHKERRQ(ierr); 392326413afSMatthew G. Knepley ierr = EvaluateFieldJets(probAux, PETSC_FALSE, q, invJ, coefficientsAux, NULL, a, a_x, NULL);CHKERRQ(ierr); 3933bc3b0a0SMatthew G. Knepley (*funcs[f])(u, NULL, u_x, a, NULL, a_x, x, &values[v]); 3940f2d7e86SMatthew G. Knepley } 3953113607cSMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, numPoints, points, &basisField[f], &basisFieldDer[f], NULL);CHKERRQ(ierr); 3960f2d7e86SMatthew G. Knepley } else { 3970f2d7e86SMatthew G. Knepley for (comp = 0; comp < Ncf; ++comp) values[v+comp] = 0.0; 3980f2d7e86SMatthew G. Knepley } 3990f2d7e86SMatthew G. Knepley v += Ncf; 4000f2d7e86SMatthew G. Knepley } 4010f2d7e86SMatthew G. Knepley } 402326413afSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localU, c, NULL, &coefficients);CHKERRQ(ierr); 403326413afSMatthew G. Knepley if (dmAux) {ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &coefficientsAux);CHKERRQ(ierr);} 4040f2d7e86SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, localX, c, values, mode);CHKERRQ(ierr); 4050f2d7e86SMatthew G. Knepley } 4060f2d7e86SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numValues, PETSC_SCALAR, &values);CHKERRQ(ierr); 4070f2d7e86SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 4080f2d7e86SMatthew G. Knepley PetscFunctionReturn(0); 4090f2d7e86SMatthew G. Knepley } 4100f2d7e86SMatthew G. Knepley 4110f2d7e86SMatthew G. Knepley #undef __FUNCT__ 412d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FEM_Internal" 413d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(const PetscReal[], PetscScalar *, void *), void *ctx, Vec locX) 41455f2e967SMatthew G. Knepley { 41555f2e967SMatthew G. Knepley void (**funcs)(const PetscReal x[], PetscScalar *u, void *ctx); 41655f2e967SMatthew G. Knepley void **ctxs; 417d7ddef95SMatthew G. Knepley PetscInt numFields; 418d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 419d7ddef95SMatthew G. Knepley 420d7ddef95SMatthew G. Knepley PetscFunctionBegin; 421d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 422d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 423d7ddef95SMatthew G. Knepley funcs[field] = func; 424d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 425d7ddef95SMatthew G. Knepley ierr = DMPlexProjectFunctionLabelLocal(dm, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 426d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 427d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 428d7ddef95SMatthew G. Knepley } 429d7ddef95SMatthew G. Knepley 430d7ddef95SMatthew G. Knepley #undef __FUNCT__ 431d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues_FVM_Internal" 432d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, 433d7ddef95SMatthew G. Knepley PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 434d7ddef95SMatthew G. Knepley { 435d7ddef95SMatthew G. Knepley PetscFV fv; 436*da97024aSMatthew G. Knepley PetscSF sf; 437d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 438d7ddef95SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *grad; 439*da97024aSMatthew G. Knepley const PetscInt *leaves; 440d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 441*da97024aSMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 442d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 443d7ddef95SMatthew G. Knepley 444d7ddef95SMatthew G. Knepley PetscFunctionBegin; 445*da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 446*da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 447*da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 448d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 449d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 450d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fv);CHKERRQ(ierr); 451d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 452d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 453d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 454d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 455d7ddef95SMatthew G. Knepley if (Grad) { 456d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 457d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 458d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 459d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 460d7ddef95SMatthew G. Knepley } 461d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 462d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 463d7ddef95SMatthew G. Knepley IS faceIS; 464d7ddef95SMatthew G. Knepley const PetscInt *faces; 465d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 466d7ddef95SMatthew G. Knepley 467d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 468d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 469d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 470d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 471d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 472d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 473d7ddef95SMatthew G. Knepley const PetscFVFaceGeom *fg; 474d7ddef95SMatthew G. Knepley 475d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 476*da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 477*da97024aSMatthew G. Knepley if (loc >= 0) continue; 478d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 479d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 480d7ddef95SMatthew G. Knepley if (Grad) { 481d7ddef95SMatthew G. Knepley const PetscFVCellGeom *cg; 482d7ddef95SMatthew G. Knepley const PetscScalar *cx, *cgrad; 483d7ddef95SMatthew G. Knepley PetscScalar *xG; 484d7ddef95SMatthew G. Knepley PetscReal dx[3]; 485d7ddef95SMatthew G. Knepley PetscInt d; 486d7ddef95SMatthew G. Knepley 487d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 488d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 489d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 490d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr); 491d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 492d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 493d7ddef95SMatthew G. Knepley ierr = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx);CHKERRQ(ierr); 494d7ddef95SMatthew G. Knepley } else { 495d7ddef95SMatthew G. Knepley const PetscScalar *xI; 496d7ddef95SMatthew G. Knepley PetscScalar *xG; 497d7ddef95SMatthew G. Knepley 498d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 499d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRef(dm, cells[1], x, &xG);CHKERRQ(ierr); 500d7ddef95SMatthew G. Knepley ierr = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx);CHKERRQ(ierr); 501d7ddef95SMatthew G. Knepley } 502d7ddef95SMatthew G. Knepley } 503d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 504d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 505d7ddef95SMatthew G. Knepley } 506d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 507d7ddef95SMatthew G. Knepley if (Grad) { 508d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 509d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 510d7ddef95SMatthew G. Knepley } 511d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 512d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 513d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 514d7ddef95SMatthew G. Knepley } 515d7ddef95SMatthew G. Knepley 516d7ddef95SMatthew G. Knepley #undef __FUNCT__ 517d7ddef95SMatthew G. Knepley #define __FUNCT__ "DMPlexInsertBoundaryValues" 518d7ddef95SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 519d7ddef95SMatthew G. Knepley { 520d7ddef95SMatthew G. Knepley PetscInt numBd, b; 52155f2e967SMatthew G. Knepley PetscErrorCode ierr; 52255f2e967SMatthew G. Knepley 52355f2e967SMatthew G. Knepley PetscFunctionBegin; 52455f2e967SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 525d7ddef95SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 526d7ddef95SMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 527d7ddef95SMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 528d7ddef95SMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 52955f2e967SMatthew G. Knepley ierr = DMPlexGetNumBoundary(dm, &numBd);CHKERRQ(ierr); 53055f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 53155f2e967SMatthew G. Knepley PetscBool isEssential; 532d7ddef95SMatthew G. Knepley const char *labelname; 533d7ddef95SMatthew G. Knepley DMLabel label; 534d7ddef95SMatthew G. Knepley PetscInt field; 535d7ddef95SMatthew G. Knepley PetscObject obj; 536d7ddef95SMatthew G. Knepley PetscClassId id; 53755f2e967SMatthew G. Knepley void (*func)(); 538d7ddef95SMatthew G. Knepley PetscInt numids; 539d7ddef95SMatthew G. Knepley const PetscInt *ids; 54055f2e967SMatthew G. Knepley void *ctx; 54155f2e967SMatthew G. Knepley 54263d5297fSMatthew G. Knepley ierr = DMPlexGetBoundary(dm, b, &isEssential, NULL, &labelname, &field, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 543d7ddef95SMatthew G. Knepley if (!isEssential) continue; 54463d5297fSMatthew G. Knepley ierr = DMPlexGetLabel(dm, labelname, &label);CHKERRQ(ierr); 545d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 546d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 547d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 548d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, field, label, numids, ids, (void (*)(const PetscReal[], PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 549d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 550d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, 551d7ddef95SMatthew G. Knepley field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 552d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 55355f2e967SMatthew G. Knepley } 55455f2e967SMatthew G. Knepley PetscFunctionReturn(0); 55555f2e967SMatthew G. Knepley } 55655f2e967SMatthew G. Knepley 557cb1e1211SMatthew G Knepley #undef __FUNCT__ 558cb1e1211SMatthew G Knepley #define __FUNCT__ "DMPlexComputeL2Diff" 559cb1e1211SMatthew G Knepley /*@C 560cb1e1211SMatthew G Knepley DMPlexComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 561cb1e1211SMatthew G Knepley 562cb1e1211SMatthew G Knepley Input Parameters: 563cb1e1211SMatthew G Knepley + dm - The DM 564cb1e1211SMatthew G Knepley . funcs - The functions to evaluate for each field component 56551259fa3SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 566cb1e1211SMatthew G Knepley - X - The coefficient vector u_h 567cb1e1211SMatthew G Knepley 568cb1e1211SMatthew G Knepley Output Parameter: 569cb1e1211SMatthew G Knepley . diff - The diff ||u - u_h||_2 570cb1e1211SMatthew G Knepley 571cb1e1211SMatthew G Knepley Level: developer 572cb1e1211SMatthew G Knepley 57315496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2FieldDiff(), DMPlexComputeL2GradientDiff() 574878cb397SSatish Balay @*/ 5750f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2Diff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 576cb1e1211SMatthew G Knepley { 577cb1e1211SMatthew G Knepley const PetscInt debug = 0; 578cb1e1211SMatthew G Knepley PetscSection section; 579c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 580cb1e1211SMatthew G Knepley Vec localX; 58115496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 582cb1e1211SMatthew G Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 583cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 58415496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 58515496722SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset; 586cb1e1211SMatthew G Knepley PetscErrorCode ierr; 587cb1e1211SMatthew G Knepley 588cb1e1211SMatthew G Knepley PetscFunctionBegin; 589c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 590cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 591cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 592cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 593cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 594cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 595cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 59615496722SMatthew G. Knepley PetscObject obj; 59715496722SMatthew G. Knepley PetscClassId id; 598c5bbbd5bSMatthew G. Knepley PetscInt Nc; 599c5bbbd5bSMatthew G. Knepley 60015496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 60115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 60215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 60315496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 60415496722SMatthew G. Knepley 6050f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 6060f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 60715496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 60815496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 60915496722SMatthew G. Knepley 61015496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 61115496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 61215496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 613c5bbbd5bSMatthew G. Knepley numComponents += Nc; 614cb1e1211SMatthew G Knepley } 61515496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 6160f2d7e86SMatthew G. Knepley ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 61715496722SMatthew G. Knepley ierr = PetscMalloc6(numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 618cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 619cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 620a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 621cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 622cb1e1211SMatthew G Knepley 6238e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 624cb1e1211SMatthew G Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 625cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 626cb1e1211SMatthew G Knepley 62715496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 62815496722SMatthew G. Knepley PetscObject obj; 62915496722SMatthew G. Knepley PetscClassId id; 630c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 63115496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 632cb1e1211SMatthew G Knepley 63315496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 63415496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 63515496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 63615496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 63715496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 638cb1e1211SMatthew G Knepley if (debug) { 639cb1e1211SMatthew G Knepley char title[1024]; 640cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 64115496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 642cb1e1211SMatthew G Knepley } 643cb1e1211SMatthew G Knepley for (q = 0; q < numQuadPoints; ++q) { 64415496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 645c110b1eeSGeoffrey Irving (*funcs[field])(coords, funcVal, ctx); 64615496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 64715496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 64815496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 64915496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 65015496722SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 65115496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 652cb1e1211SMatthew G Knepley } 653cb1e1211SMatthew G Knepley } 65415496722SMatthew G. Knepley fieldOffset += Nb*Nc; 655cb1e1211SMatthew G Knepley } 656cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 657cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 658cb1e1211SMatthew G Knepley localDiff += elemDiff; 659cb1e1211SMatthew G Knepley } 66015496722SMatthew G. Knepley ierr = PetscFree6(funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 661cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 66286a74ee0SMatthew G. Knepley ierr = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 663cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 664cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 665cb1e1211SMatthew G Knepley } 666cb1e1211SMatthew G Knepley 667cb1e1211SMatthew G Knepley #undef __FUNCT__ 66840e14135SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2GradientDiff" 66940e14135SMatthew G. Knepley /*@C 67040e14135SMatthew G. Knepley DMPlexComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 67140e14135SMatthew G. Knepley 67240e14135SMatthew G. Knepley Input Parameters: 67340e14135SMatthew G. Knepley + dm - The DM 67440e14135SMatthew G. Knepley . funcs - The gradient functions to evaluate for each field component 67551259fa3SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 67640e14135SMatthew G. Knepley . X - The coefficient vector u_h 67740e14135SMatthew G. Knepley - n - The vector to project along 67840e14135SMatthew G. Knepley 67940e14135SMatthew G. Knepley Output Parameter: 68040e14135SMatthew G. Knepley . diff - The diff ||(grad u - grad u_h) . n||_2 68140e14135SMatthew G. Knepley 68240e14135SMatthew G. Knepley Level: developer 68340e14135SMatthew G. Knepley 68440e14135SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff() 68540e14135SMatthew G. Knepley @*/ 6860f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2GradientDiff(DM dm, void (**funcs)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 687cb1e1211SMatthew G Knepley { 68840e14135SMatthew G. Knepley const PetscInt debug = 0; 689cb1e1211SMatthew G Knepley PetscSection section; 69040e14135SMatthew G. Knepley PetscQuadrature quad; 69140e14135SMatthew G. Knepley Vec localX; 69240e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 69340e14135SMatthew G. Knepley PetscReal *coords, *realSpaceDer, *v0, *J, *invJ, detJ; 69440e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 69540e14135SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset, comp; 696cb1e1211SMatthew G Knepley PetscErrorCode ierr; 697cb1e1211SMatthew G Knepley 698cb1e1211SMatthew G Knepley PetscFunctionBegin; 699c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 70040e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 70140e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 70240e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 70340e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 70440e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 705652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 7060f2d7e86SMatthew G. Knepley PetscFE fe; 70740e14135SMatthew G. Knepley PetscInt Nc; 708652b88e8SMatthew G. Knepley 7090f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 7100f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7110f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 71240e14135SMatthew G. Knepley numComponents += Nc; 713652b88e8SMatthew G. Knepley } 71440e14135SMatthew G. Knepley /* ierr = DMPlexProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 71540e14135SMatthew G. Knepley ierr = PetscMalloc7(numComponents,&funcVal,dim,&coords,dim,&realSpaceDer,dim,&v0,dim*dim,&J,dim*dim,&invJ,dim,&interpolantVec);CHKERRQ(ierr); 71640e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 71740e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 71840e14135SMatthew G. Knepley PetscScalar *x = NULL; 71940e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 720652b88e8SMatthew G. Knepley 7218e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 72240e14135SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 72340e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 72440e14135SMatthew G. Knepley 72540e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 7260f2d7e86SMatthew G. Knepley PetscFE fe; 72751259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 72821454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 72940e14135SMatthew G. Knepley PetscReal *basisDer; 73021454ff5SMatthew G. Knepley PetscInt numQuadPoints, Nb, Ncomp, q, d, e, fc, f, g; 73140e14135SMatthew G. Knepley 7320f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 73321454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 7340f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 7350f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 7360f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 73740e14135SMatthew G. Knepley if (debug) { 73840e14135SMatthew G. Knepley char title[1024]; 73940e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 74040e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 741652b88e8SMatthew G. Knepley } 74240e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 74340e14135SMatthew G. Knepley for (d = 0; d < dim; d++) { 74440e14135SMatthew G. Knepley coords[d] = v0[d]; 74540e14135SMatthew G. Knepley for (e = 0; e < dim; e++) { 74640e14135SMatthew G. Knepley coords[d] += J[d*dim+e]*(quadPoints[q*dim+e] + 1.0); 747652b88e8SMatthew G. Knepley } 74840e14135SMatthew G. Knepley } 74951259fa3SMatthew G. Knepley (*funcs[field])(coords, n, funcVal, ctx); 75040e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 75140e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 75240e14135SMatthew G. Knepley 75340e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolantVec[d] = 0.0; 75440e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 75540e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 75640e14135SMatthew G. Knepley 75740e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) { 75840e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 75940e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 76040e14135SMatthew G. Knepley realSpaceDer[d] += invJ[g*dim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 76140e14135SMatthew G. Knepley } 76240e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 76340e14135SMatthew G. Knepley } 76440e14135SMatthew G. Knepley } 76540e14135SMatthew G. Knepley for (d = 0; d < dim; ++d) interpolant += interpolantVec[d]*n[d]; 76640e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 76740e14135SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ; 76840e14135SMatthew G. Knepley } 76940e14135SMatthew G. Knepley } 77040e14135SMatthew G. Knepley comp += Ncomp; 77140e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 77240e14135SMatthew G. Knepley } 77340e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 77440e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 77540e14135SMatthew G. Knepley localDiff += elemDiff; 77640e14135SMatthew G. Knepley } 77740e14135SMatthew G. Knepley ierr = PetscFree7(funcVal,coords,realSpaceDer,v0,J,invJ,interpolantVec);CHKERRQ(ierr); 77840e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 77940e14135SMatthew G. Knepley ierr = MPI_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 78040e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 781cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 782cb1e1211SMatthew G Knepley } 783cb1e1211SMatthew G Knepley 784a0845e3aSMatthew G. Knepley #undef __FUNCT__ 78573d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeL2FieldDiff" 78615496722SMatthew G. Knepley /*@C 78715496722SMatthew G. Knepley DMPlexComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 78815496722SMatthew G. Knepley 78915496722SMatthew G. Knepley Input Parameters: 79015496722SMatthew G. Knepley + dm - The DM 79115496722SMatthew G. Knepley . funcs - The functions to evaluate for each field component 79215496722SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 79315496722SMatthew G. Knepley - X - The coefficient vector u_h 79415496722SMatthew G. Knepley 79515496722SMatthew G. Knepley Output Parameter: 79615496722SMatthew G. Knepley . diff - The array of differences, ||u^f - u^f_h||_2 79715496722SMatthew G. Knepley 79815496722SMatthew G. Knepley Level: developer 79915496722SMatthew G. Knepley 80015496722SMatthew G. Knepley .seealso: DMPlexProjectFunction(), DMPlexComputeL2Diff(), DMPlexComputeL2GradientDiff() 80115496722SMatthew G. Knepley @*/ 8020f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeL2FieldDiff(DM dm, void (**funcs)(const PetscReal [], PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 80373d901b8SMatthew G. Knepley { 80473d901b8SMatthew G. Knepley const PetscInt debug = 0; 80573d901b8SMatthew G. Knepley PetscSection section; 80673d901b8SMatthew G. Knepley PetscQuadrature quad; 80773d901b8SMatthew G. Knepley Vec localX; 80815496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 80973d901b8SMatthew G. Knepley PetscReal *coords, *v0, *J, *invJ, detJ; 81073d901b8SMatthew G. Knepley PetscReal *localDiff; 81115496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 81215496722SMatthew G. Knepley PetscInt dim, numFields, numComponents = 0, numQuadPoints, cStart, cEnd, c, field, fieldOffset; 81373d901b8SMatthew G. Knepley PetscErrorCode ierr; 81473d901b8SMatthew G. Knepley 81573d901b8SMatthew G. Knepley PetscFunctionBegin; 816c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 81773d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 81873d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 81973d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 82073d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 82173d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 82273d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 82315496722SMatthew G. Knepley PetscObject obj; 82415496722SMatthew G. Knepley PetscClassId id; 82573d901b8SMatthew G. Knepley PetscInt Nc; 82673d901b8SMatthew G. Knepley 82715496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 82815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 82915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 83015496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 83115496722SMatthew G. Knepley 8320f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 8330f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 83415496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 83515496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 83615496722SMatthew G. Knepley 83715496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 83815496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 83915496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 84073d901b8SMatthew G. Knepley numComponents += Nc; 84173d901b8SMatthew G. Knepley } 84215496722SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 8430f2d7e86SMatthew G. Knepley ierr = DMPlexProjectFunctionLocal(dm, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 84415496722SMatthew G. Knepley ierr = PetscCalloc7(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,dim,&coords,dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 84573d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 84673d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 84773d901b8SMatthew G. Knepley PetscScalar *x = NULL; 84873d901b8SMatthew G. Knepley 8498e0841e0SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 85073d901b8SMatthew G. Knepley if (detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", detJ, c); 85173d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 85273d901b8SMatthew G. Knepley 85315496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 85415496722SMatthew G. Knepley PetscObject obj; 85515496722SMatthew G. Knepley PetscClassId id; 85673d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 85715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 85873d901b8SMatthew G. Knepley 85915496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 86015496722SMatthew G. Knepley 86115496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 86215496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 86315496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 86415496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 86515496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 86673d901b8SMatthew G. Knepley if (debug) { 86773d901b8SMatthew G. Knepley char title[1024]; 86873d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 86915496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 87073d901b8SMatthew G. Knepley } 87173d901b8SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 87215496722SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &quadPoints[q*dim], coords); 87373d901b8SMatthew G. Knepley (*funcs[field])(coords, funcVal, ctx); 87415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 87515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 87615496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 87715496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 87815496722SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ);CHKERRQ(ierr);} 87915496722SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ; 88073d901b8SMatthew G. Knepley } 88173d901b8SMatthew G. Knepley } 88215496722SMatthew G. Knepley fieldOffset += Nb*Nc; 88373d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 88473d901b8SMatthew G. Knepley } 88573d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 88673d901b8SMatthew G. Knepley } 88773d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 88873d901b8SMatthew G. Knepley ierr = MPI_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 88973d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 89015496722SMatthew G. Knepley ierr = PetscFree7(localDiff,funcVal,interpolant,coords,v0,J,invJ);CHKERRQ(ierr); 89173d901b8SMatthew G. Knepley PetscFunctionReturn(0); 89273d901b8SMatthew G. Knepley } 89373d901b8SMatthew G. Knepley 89473d901b8SMatthew G. Knepley #undef __FUNCT__ 89573d901b8SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeIntegralFEM" 89673d901b8SMatthew G. Knepley /*@ 89773d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 89873d901b8SMatthew G. Knepley 89973d901b8SMatthew G. Knepley Input Parameters: 90073d901b8SMatthew G. Knepley + dm - The mesh 90173d901b8SMatthew G. Knepley . X - Local input vector 90273d901b8SMatthew G. Knepley - user - The user context 90373d901b8SMatthew G. Knepley 90473d901b8SMatthew G. Knepley Output Parameter: 90573d901b8SMatthew G. Knepley . integral - Local integral for each field 90673d901b8SMatthew G. Knepley 90773d901b8SMatthew G. Knepley Level: developer 90873d901b8SMatthew G. Knepley 90973d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 91073d901b8SMatthew G. Knepley @*/ 9110f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 91273d901b8SMatthew G. Knepley { 91373d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 91473d901b8SMatthew G. Knepley DM dmAux; 91573d901b8SMatthew G. Knepley Vec localX, A; 9162764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 91773d901b8SMatthew G. Knepley PetscQuadrature q; 91873d901b8SMatthew G. Knepley PetscSection section, sectionAux; 919bbce034cSMatthew G. Knepley PetscFECellGeom *cgeom; 92073d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 9210f2d7e86SMatthew G. Knepley PetscInt dim, Nf, f, numCells, cStart, cEnd, c; 9220f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 92373d901b8SMatthew G. Knepley PetscErrorCode ierr; 92473d901b8SMatthew G. Knepley 92573d901b8SMatthew G. Knepley PetscFunctionBegin; 92673d901b8SMatthew G. Knepley /*ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/ 92773d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 92873d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 92973d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 930c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 93173d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 9322764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 9332764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 93473d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 93573d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 93673d901b8SMatthew G. Knepley numCells = cEnd - cStart; 9370f2d7e86SMatthew G. Knepley for (f = 0; f < Nf; ++f) {integral[f] = 0.0;} 93873d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 93973d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 94073d901b8SMatthew G. Knepley if (dmAux) { 94173d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 9422764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 9432764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 94473d901b8SMatthew G. Knepley } 945d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 946bbce034cSMatthew G. Knepley ierr = PetscMalloc2(numCells*totDim,&u,numCells,&cgeom);CHKERRQ(ierr); 9470f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 94873d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 94973d901b8SMatthew G. Knepley PetscScalar *x = NULL; 95073d901b8SMatthew G. Knepley PetscInt i; 95173d901b8SMatthew G. Knepley 952bbce034cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeom[c].v0, cgeom[c].J, cgeom[c].invJ, &cgeom[c].detJ);CHKERRQ(ierr); 953bbce034cSMatthew G. Knepley if (cgeom[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeom[c].detJ, c); 95473d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 9550f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 95673d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 95773d901b8SMatthew G. Knepley if (dmAux) { 95873d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 9590f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 96073d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 96173d901b8SMatthew G. Knepley } 96273d901b8SMatthew G. Knepley } 96373d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 9640f2d7e86SMatthew G. Knepley PetscFE fe; 96573d901b8SMatthew G. Knepley PetscInt numQuadPoints, Nb; 96673d901b8SMatthew G. Knepley /* Conforming batches */ 96773d901b8SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 96873d901b8SMatthew G. Knepley /* Remainder */ 96973d901b8SMatthew G. Knepley PetscInt Nr, offset; 97073d901b8SMatthew G. Knepley 9712764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 9720f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 9730f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 9740f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 97573d901b8SMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr); 97673d901b8SMatthew G. Knepley blockSize = Nb*numQuadPoints; 97773d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 9780f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 97973d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 98073d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 98173d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 98273d901b8SMatthew G. Knepley offset = numCells - Nr; 983bbce034cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeom, u, probAux, a, integral);CHKERRQ(ierr); 984bbce034cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeom[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], integral);CHKERRQ(ierr); 98573d901b8SMatthew G. Knepley } 986bbce034cSMatthew G. Knepley ierr = PetscFree2(u,cgeom);CHKERRQ(ierr); 98773d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 98873d901b8SMatthew G. Knepley if (mesh->printFEM) { 98973d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 99073d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", integral[f]);CHKERRQ(ierr);} 99173d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 99273d901b8SMatthew G. Knepley } 99373d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 99473d901b8SMatthew G. Knepley /* TODO: Allreduce for integral */ 99573d901b8SMatthew G. Knepley /*ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr);*/ 99673d901b8SMatthew G. Knepley PetscFunctionReturn(0); 99773d901b8SMatthew G. Knepley } 99873d901b8SMatthew G. Knepley 99973d901b8SMatthew G. Knepley #undef __FUNCT__ 1000d69c5d34SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInterpolatorFEM" 1001d69c5d34SMatthew G. Knepley /*@ 1002d69c5d34SMatthew G. Knepley DMPlexComputeInterpolatorFEM - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1003d69c5d34SMatthew G. Knepley 1004d69c5d34SMatthew G. Knepley Input Parameters: 1005d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1006d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1007d69c5d34SMatthew G. Knepley - user - The user context 1008d69c5d34SMatthew G. Knepley 1009d69c5d34SMatthew G. Knepley Output Parameter: 1010934789fcSMatthew G. Knepley . In - The interpolation matrix 1011d69c5d34SMatthew G. Knepley 1012d69c5d34SMatthew G. Knepley Note: 1013d69c5d34SMatthew G. Knepley The first member of the user context must be an FEMContext. 1014d69c5d34SMatthew G. Knepley 1015d69c5d34SMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 1016d69c5d34SMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 1017d69c5d34SMatthew G. Knepley 1018d69c5d34SMatthew G. Knepley Level: developer 1019d69c5d34SMatthew G. Knepley 1020d69c5d34SMatthew G. Knepley .seealso: DMPlexComputeJacobianFEM() 1021d69c5d34SMatthew G. Knepley @*/ 1022934789fcSMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorFEM(DM dmc, DM dmf, Mat In, void *user) 1023d69c5d34SMatthew G. Knepley { 1024d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1025d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 10262764a2aaSMatthew G. Knepley PetscDS prob; 1027d69c5d34SMatthew G. Knepley PetscFE *feRef; 1028d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1029d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1030d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 1031942a7a06SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 10320f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1033d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1034d69c5d34SMatthew G. Knepley 1035d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1036d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1037c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1038d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1039d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1040d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1041d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1042d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1043d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 10442764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 1045d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr); 1046d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 10470f2d7e86SMatthew G. Knepley PetscFE fe; 10480f2d7e86SMatthew G. Knepley PetscInt rNb, Nc; 1049d69c5d34SMatthew G. Knepley 10502764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 10510f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1052d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 10530f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 10540f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1055d69c5d34SMatthew G. Knepley } 10562764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 10570f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 10580f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1059d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1060d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1061d69c5d34SMatthew G. Knepley PetscQuadrature f; 1062d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1063d69c5d34SMatthew G. Knepley PetscReal *points; 1064d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1065d69c5d34SMatthew G. Knepley 1066d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 1067d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 10680f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 1069d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1070d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1071d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1072d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1073d69c5d34SMatthew G. Knepley npoints += Np; 1074d69c5d34SMatthew G. Knepley } 1075d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1076d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1077d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1078d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1079d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1080d69c5d34SMatthew G. Knepley } 1081d69c5d34SMatthew G. Knepley 1082d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 10830f2d7e86SMatthew G. Knepley PetscFE fe; 1084d69c5d34SMatthew G. Knepley PetscReal *B; 108536a6d9c0SMatthew G. Knepley PetscInt NcJ, cpdim, j; 1086d69c5d34SMatthew G. Knepley 1087d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 10882764a2aaSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, (PetscObject *) &fe);CHKERRQ(ierr); 10890f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 10900f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1091ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1092ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 10937c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 10940f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1095d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1096d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1097d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1098d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 109936a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 11000f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 110136a6d9c0SMatthew G. Knepley } 1102d69c5d34SMatthew G. Knepley } 1103d69c5d34SMatthew G. Knepley } 11040f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1105ffe73a53SMatthew G. Knepley } 110636a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1107d69c5d34SMatthew G. Knepley } 1108d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1109549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1110d69c5d34SMatthew G. Knepley } 11110f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 11127f5b169aSMatthew G. Knepley /* Preallocate matrix */ 11137f5b169aSMatthew G. Knepley { 11147f5b169aSMatthew G. Knepley PetscHashJK ht; 11157f5b169aSMatthew G. Knepley PetscLayout rLayout; 11167f5b169aSMatthew G. Knepley PetscInt *dnz, *onz, *cellCIndices, *cellFIndices; 11177f5b169aSMatthew G. Knepley PetscInt locRows, rStart, rEnd, cell, r; 11187f5b169aSMatthew G. Knepley 11197f5b169aSMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 11207f5b169aSMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 11217f5b169aSMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 11227f5b169aSMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 11237f5b169aSMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 11247f5b169aSMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 11257f5b169aSMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 11267f5b169aSMatthew G. Knepley ierr = PetscCalloc4(locRows,&dnz,locRows,&onz,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 11277f5b169aSMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 11287f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 11297f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 11307f5b169aSMatthew G. Knepley for (r = 0; r < rTotDim; ++r) { 11317f5b169aSMatthew G. Knepley PetscHashJKKey key; 11327f5b169aSMatthew G. Knepley PetscHashJKIter missing, iter; 11337f5b169aSMatthew G. Knepley 11347f5b169aSMatthew G. Knepley key.j = cellFIndices[r]; 11357f5b169aSMatthew G. Knepley if (key.j < 0) continue; 11367f5b169aSMatthew G. Knepley for (c = 0; c < cTotDim; ++c) { 11377f5b169aSMatthew G. Knepley key.k = cellCIndices[c]; 11387f5b169aSMatthew G. Knepley if (key.k < 0) continue; 11397f5b169aSMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 11407f5b169aSMatthew G. Knepley if (missing) { 11417f5b169aSMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 11427f5b169aSMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 11437f5b169aSMatthew G. Knepley else ++onz[key.j-rStart]; 11447f5b169aSMatthew G. Knepley } 11457f5b169aSMatthew G. Knepley } 11467f5b169aSMatthew G. Knepley } 11477f5b169aSMatthew G. Knepley } 11487f5b169aSMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 11497f5b169aSMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 11507f5b169aSMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 11517f5b169aSMatthew G. Knepley ierr = PetscFree4(dnz,onz,cellCIndices,cellFIndices);CHKERRQ(ierr); 11527f5b169aSMatthew G. Knepley } 11537f5b169aSMatthew G. Knepley /* Fill matrix */ 11547f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1155d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1156934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1157d69c5d34SMatthew G. Knepley } 1158549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 1159d69c5d34SMatthew G. Knepley ierr = PetscFree(feRef);CHKERRQ(ierr); 1160549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1161934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1162934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1163d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1164d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1165934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1166934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1167d69c5d34SMatthew G. Knepley } 1168d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1169d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1170d69c5d34SMatthew G. Knepley } 11716c73c22cSMatthew G. Knepley 11726c73c22cSMatthew G. Knepley #undef __FUNCT__ 11737c927364SMatthew G. Knepley #define __FUNCT__ "DMPlexComputeInjectorFEM" 11747c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 11757c927364SMatthew G. Knepley { 1176e9d4ef1bSMatthew G. Knepley PetscDS prob; 11777c927364SMatthew G. Knepley PetscFE *feRef; 11787c927364SMatthew G. Knepley Vec fv, cv; 11797c927364SMatthew G. Knepley IS fis, cis; 11807c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 11817c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 11827c927364SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, offsetC, offsetF, m; 11837c927364SMatthew G. Knepley PetscErrorCode ierr; 11847c927364SMatthew G. Knepley 11857c927364SMatthew G. Knepley PetscFunctionBegin; 118675a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1187c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 11887c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 11897c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 11907c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 11917c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 11927c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 11937c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 1194e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 11957c927364SMatthew G. Knepley ierr = PetscMalloc1(Nf,&feRef);CHKERRQ(ierr); 11967c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 11977c927364SMatthew G. Knepley PetscFE fe; 11987c927364SMatthew G. Knepley PetscInt fNb, Nc; 11997c927364SMatthew G. Knepley 1200e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fe);CHKERRQ(ierr); 12017c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 12027c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 12037c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 12047c927364SMatthew G. Knepley fTotDim += fNb*Nc; 12057c927364SMatthew G. Knepley } 1206e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 12077c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 12087c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 12097c927364SMatthew G. Knepley PetscFE feC; 12107c927364SMatthew G. Knepley PetscDualSpace QF, QC; 12117c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 12127c927364SMatthew G. Knepley 1213e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 12147c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 12157c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 12167c927364SMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 12177c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 12187c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 12197c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 12207c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 12217c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 12227c927364SMatthew G. Knepley PetscQuadrature cfunc; 12237c927364SMatthew G. Knepley const PetscReal *cqpoints; 12247c927364SMatthew G. Knepley PetscInt NpC; 12257c927364SMatthew G. Knepley 12267c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 12277c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 12287c927364SMatthew G. Knepley if (NpC != 1) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 12297c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 12307c927364SMatthew G. Knepley PetscQuadrature ffunc; 12317c927364SMatthew G. Knepley const PetscReal *fqpoints; 12327c927364SMatthew G. Knepley PetscReal sum = 0.0; 12337c927364SMatthew G. Knepley PetscInt NpF, comp; 12347c927364SMatthew G. Knepley 12357c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 12367c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 12377c927364SMatthew G. Knepley if (NpC != NpF) continue; 12387c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 12397c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 12407c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 12417c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 12427c927364SMatthew G. Knepley } 12437c927364SMatthew G. Knepley break; 12447c927364SMatthew G. Knepley } 12457c927364SMatthew G. Knepley } 12467c927364SMatthew G. Knepley offsetC += cpdim*NcC; 12477c927364SMatthew G. Knepley offsetF += fpdim*NcF; 12487c927364SMatthew G. Knepley } 12497c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 12507c927364SMatthew G. Knepley ierr = PetscFree(feRef);CHKERRQ(ierr); 12517c927364SMatthew G. Knepley 12527c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 12537c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 12547c927364SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, NULL);CHKERRQ(ierr); 12557c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 12567c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1257aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1258aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 12597c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 12607c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 12617c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 12627c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 12637c927364SMatthew G. Knepley if (cellCIndices[d] < 0) continue; 12647c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 12657c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 12667c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 12677c927364SMatthew G. Knepley } 12687c927364SMatthew G. Knepley } 12697c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 12707c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 12717c927364SMatthew G. Knepley 12727c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 12737c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 12747c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 12757c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 12767c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 12777c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 12787c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 127975a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1280cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1281cb1e1211SMatthew G Knepley } 1282