1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 48e3a2eefSMatthew G. Knepley #include <petscblaslapack.h> 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 95f0b18bfSMatthew G. Knepley PetscBool Clementcite = PETSC_FALSE; 105f0b18bfSMatthew G. Knepley const char ClementCitation[] = "@article{clement1975approximation,\n" 115f0b18bfSMatthew G. Knepley " title = {Approximation by finite element functions using local regularization},\n" 125f0b18bfSMatthew G. Knepley " author = {Philippe Cl{\\'e}ment},\n" 135f0b18bfSMatthew G. Knepley " journal = {Revue fran{\\c{c}}aise d'automatique, informatique, recherche op{\\'e}rationnelle. Analyse num{\\'e}rique},\n" 145f0b18bfSMatthew G. Knepley " volume = {9},\n" 155f0b18bfSMatthew G. Knepley " number = {R2},\n" 165f0b18bfSMatthew G. Knepley " pages = {77--84},\n" 175f0b18bfSMatthew G. Knepley " year = {1975}\n}\n"; 185f0b18bfSMatthew G. Knepley 19d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 20d71ae5a4SJacob Faibussowitsch { 212f856554SMatthew G. Knepley PetscBool isPlex; 222f856554SMatthew G. Knepley 232f856554SMatthew G. Knepley PetscFunctionBegin; 249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 252f856554SMatthew G. Knepley if (isPlex) { 262f856554SMatthew G. Knepley *plex = dm; 279566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 282f856554SMatthew G. Knepley } else { 299566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 302f856554SMatthew G. Knepley if (!*plex) { 319566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 332f856554SMatthew G. Knepley if (copy) { 342f856554SMatthew G. Knepley DMSubDomainHookLink link; 359a2a23afSMatthew G. Knepley 369566063dSJacob Faibussowitsch PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 379a2a23afSMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 382f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 399566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, *plex, link->ctx)); 402f856554SMatthew G. Knepley } 412f856554SMatthew G. Knepley } 422f856554SMatthew G. Knepley } else { 439566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley } 463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472f856554SMatthew G. Knepley } 482f856554SMatthew G. Knepley 49d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom(void *ctx) 50d71ae5a4SJacob Faibussowitsch { 519b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *)ctx; 529b6f715bSMatthew G. Knepley 539b6f715bSMatthew G. Knepley PetscFunctionBegin; 549566063dSJacob Faibussowitsch PetscCall(PetscFEGeomDestroy(&geom)); 553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 569b6f715bSMatthew G. Knepley } 579b6f715bSMatthew G. Knepley 58d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 59d71ae5a4SJacob Faibussowitsch { 609b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 619b6f715bSMatthew G. Knepley PetscObjectId id; 629b6f715bSMatthew G. Knepley PetscContainer container; 639b6f715bSMatthew G. Knepley 649b6f715bSMatthew G. Knepley PetscFunctionBegin; 659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 6663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%" PetscInt64_FMT "\n", id)); 679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 689b6f715bSMatthew G. Knepley if (container) { 699566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 709b6f715bSMatthew G. Knepley } else { 719566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 729566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 739566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 749566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 769566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 779b6f715bSMatthew G. Knepley } 783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 799b6f715bSMatthew G. Knepley } 809b6f715bSMatthew G. Knepley 81d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 82d71ae5a4SJacob Faibussowitsch { 839b6f715bSMatthew G. Knepley PetscFunctionBegin; 849b6f715bSMatthew G. Knepley *geom = NULL; 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 869b6f715bSMatthew G. Knepley } 879b6f715bSMatthew G. Knepley 8846fa42a0SMatthew G. Knepley /*@ 8946fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9046fa42a0SMatthew G. Knepley 9146fa42a0SMatthew G. Knepley Not collective 9246fa42a0SMatthew G. Knepley 934165533cSJose E. Roman Input Parameters: 94a1cb98faSBarry Smith + dm - the `DM` 9546fa42a0SMatthew G. Knepley - unit - The SI unit 9646fa42a0SMatthew G. Knepley 974165533cSJose E. Roman Output Parameter: 9846fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 9946fa42a0SMatthew G. Knepley 10046fa42a0SMatthew G. Knepley Level: advanced 10146fa42a0SMatthew G. Knepley 102a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetScale()`, `PetscUnit` 10346fa42a0SMatthew G. Knepley @*/ 104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 105d71ae5a4SJacob Faibussowitsch { 106cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 107cb1e1211SMatthew G Knepley 108cb1e1211SMatthew G Knepley PetscFunctionBegin; 109cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 110dadcf809SJacob Faibussowitsch PetscValidRealPointer(scale, 3); 111cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 1123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113cb1e1211SMatthew G Knepley } 114cb1e1211SMatthew G Knepley 11546fa42a0SMatthew G. Knepley /*@ 11646fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11746fa42a0SMatthew G. Knepley 11846fa42a0SMatthew G. Knepley Not collective 11946fa42a0SMatthew G. Knepley 1204165533cSJose E. Roman Input Parameters: 121a1cb98faSBarry Smith + dm - the `DM` 12246fa42a0SMatthew G. Knepley . unit - The SI unit 12346fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12446fa42a0SMatthew G. Knepley 12546fa42a0SMatthew G. Knepley Level: advanced 12646fa42a0SMatthew G. Knepley 127a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetScale()`, `PetscUnit` 12846fa42a0SMatthew G. Knepley @*/ 129d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 130d71ae5a4SJacob Faibussowitsch { 131cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 132cb1e1211SMatthew G Knepley 133cb1e1211SMatthew G Knepley PetscFunctionBegin; 134cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 135cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 1363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137cb1e1211SMatthew G Knepley } 138cb1e1211SMatthew G Knepley 139d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nc, PetscScalar *mode, void *ctx) 140d71ae5a4SJacob Faibussowitsch { 1419371c9d4SSatish Balay const PetscInt eps[3][3][3] = { 1429371c9d4SSatish Balay {{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, 1439371c9d4SSatish Balay {{0, 0, -1}, {0, 0, 0}, {1, 0, 0} }, 1449371c9d4SSatish Balay {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0} } 1459371c9d4SSatish Balay }; 146026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *)ctx; 147ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 148026175e5SToby Isaac PetscInt d = ctxInt[1]; 149026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 150026175e5SToby Isaac 151ad917190SMatthew G. Knepley PetscFunctionBegin; 15263a3b9bcSJacob Faibussowitsch PetscCheck(dim == dim2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %" PetscInt_FMT " does not match context dimension %" PetscInt_FMT, dim, dim2); 153026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 154026175e5SToby Isaac if (d < dim) { 15512adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 156ad917190SMatthew G. Knepley } else { 157026175e5SToby Isaac for (i = 0; i < dim; i++) { 1589371c9d4SSatish Balay for (j = 0; j < dim; j++) { mode[j] += eps[i][j][k] * X[i]; /* Rotation about axis d */ } 159026175e5SToby Isaac } 160026175e5SToby Isaac } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162026175e5SToby Isaac } 163026175e5SToby Isaac 164cc4e42d9SMartin Diehl /*@ 16512adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 166cb1e1211SMatthew G Knepley 167d083f849SBarry Smith Collective on dm 168cb1e1211SMatthew G Knepley 1694165533cSJose E. Roman Input Parameters: 170a1cb98faSBarry Smith + dm - the `DM` 17156cf3b9cSMatthew G. Knepley - field - The field number for the rigid body space, or 0 for the default 172cb1e1211SMatthew G Knepley 1734165533cSJose E. Roman Output Parameter: 174cb1e1211SMatthew G Knepley . sp - the null space 175cb1e1211SMatthew G Knepley 176cb1e1211SMatthew G Knepley Level: advanced 177cb1e1211SMatthew G Knepley 178a1cb98faSBarry Smith Note: 179a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 180a1cb98faSBarry Smith 181a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()`, `PCGAMG` 182cb1e1211SMatthew G Knepley @*/ 183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBody(DM dm, PetscInt field, MatNullSpace *sp) 184d71ae5a4SJacob Faibussowitsch { 18556cf3b9cSMatthew G. Knepley PetscErrorCode (**func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *); 186cb1e1211SMatthew G Knepley MPI_Comm comm; 187026175e5SToby Isaac Vec mode[6]; 188026175e5SToby Isaac PetscSection section, globalSection; 18956cf3b9cSMatthew G. Knepley PetscInt dim, dimEmbed, Nf, n, m, mmin, d, i, j; 190*db14aad5SMatthew G. Knepley void **ctxs; 191cb1e1211SMatthew G Knepley 192cb1e1211SMatthew G Knepley PetscFunctionBegin; 1939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1949566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1959566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 1969566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 19763a3b9bcSJacob Faibussowitsch PetscCheck(!Nf || !(field < 0 || field >= Nf), comm, PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", field, Nf); 19856cf3b9cSMatthew G. Knepley if (dim == 1 && Nf < 2) { 1999566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp)); 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 201cb1e1211SMatthew G Knepley } 2029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 205*db14aad5SMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &func, Nf, &ctxs)); 206b247467aSMatthew G. Knepley m = (dim * (dim + 1)) / 2; 2079566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2089566063dSJacob Faibussowitsch PetscCall(VecSetType(mode[0], dm->vectype)); 2099566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2109566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2119566063dSJacob Faibussowitsch PetscCall(VecGetSize(mode[0], &n)); 212b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 21356cf3b9cSMatthew G. Knepley func[field] = DMPlexProjectRigidBody_Private; 2149566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 215026175e5SToby Isaac for (d = 0; d < m; d++) { 216330485fdSToby Isaac PetscInt ctx[2]; 217cb1e1211SMatthew G Knepley 218*db14aad5SMatthew G. Knepley ctxs[field] = (void *)(&ctx[0]); 2199d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 220330485fdSToby Isaac ctx[1] = d; 221*db14aad5SMatthew G. Knepley PetscCall(DMProjectFunction(dm, 0.0, func, ctxs, INSERT_VALUES, mode[d])); 222cb1e1211SMatthew G Knepley } 2233b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 224b50a2c0aSJacob Faibussowitsch for (i = 0; i < mmin; ++i) { 225b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 226b50a2c0aSJacob Faibussowitsch 2279566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 2289566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], mmin - i - 1, mode + i + 1, dots + i + 1)); 229b50a2c0aSJacob Faibussowitsch for (j = i + 1; j < mmin; ++j) { 230b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 2319566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 232b50a2c0aSJacob Faibussowitsch } 233cb1e1211SMatthew G Knepley } 2349566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp)); 2359566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 236*db14aad5SMatthew G. Knepley PetscCall(PetscFree2(func, ctxs)); 2373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 238cb1e1211SMatthew G Knepley } 239cb1e1211SMatthew G Knepley 240cc4e42d9SMartin Diehl /*@ 24112adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 24212adca46SMatthew G. Knepley 243d083f849SBarry Smith Collective on dm 24412adca46SMatthew G. Knepley 2454165533cSJose E. Roman Input Parameters: 246a1cb98faSBarry Smith + dm - the `DM` 24712adca46SMatthew G. Knepley . nb - The number of bodies 248a1cb98faSBarry Smith . label - The `DMLabel` marking each domain 24912adca46SMatthew G. Knepley . nids - The number of ids per body 25012adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 25112adca46SMatthew G. Knepley 2524165533cSJose E. Roman Output Parameter: 25312adca46SMatthew G. Knepley . sp - the null space 25412adca46SMatthew G. Knepley 25512adca46SMatthew G. Knepley Level: advanced 25612adca46SMatthew G. Knepley 257a1cb98faSBarry Smith Note: 258a1cb98faSBarry Smith This is necessary to provide a suitable coarse space for algebraic multigrid 259a1cb98faSBarry Smith 260a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `MatNullSpaceCreate()` 26112adca46SMatthew G. Knepley @*/ 262d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 263d71ae5a4SJacob Faibussowitsch { 26412adca46SMatthew G. Knepley MPI_Comm comm; 26512adca46SMatthew G. Knepley PetscSection section, globalSection; 26612adca46SMatthew G. Knepley Vec *mode; 26712adca46SMatthew G. Knepley PetscScalar *dots; 26812adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 26912adca46SMatthew G. Knepley 27012adca46SMatthew G. Knepley PetscFunctionBegin; 2719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 2729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 2739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dimEmbed)); 2749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 2759566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 2769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &n)); 27712adca46SMatthew G. Knepley m = nb * (dim * (dim + 1)) / 2; 2789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &mode, m, &dots)); 2799566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, &mode[0])); 2809566063dSJacob Faibussowitsch PetscCall(VecSetSizes(mode[0], n, PETSC_DETERMINE)); 2819566063dSJacob Faibussowitsch PetscCall(VecSetUp(mode[0])); 2829566063dSJacob Faibussowitsch for (i = 1; i < m; ++i) PetscCall(VecDuplicate(mode[0], &mode[i])); 28312adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 28412adca46SMatthew G. Knepley for (d = 0; d < m / nb; ++d) { 28512adca46SMatthew G. Knepley PetscInt ctx[2]; 28612adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 28712adca46SMatthew G. Knepley void *voidctx = (void *)(&ctx[0]); 28812adca46SMatthew G. Knepley 28912adca46SMatthew G. Knepley ctx[0] = dimEmbed; 29012adca46SMatthew G. Knepley ctx[1] = d; 2919566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d])); 29212adca46SMatthew G. Knepley off += nids[b]; 29312adca46SMatthew G. Knepley } 29412adca46SMatthew G. Knepley } 2953b2202bfSJacob Faibussowitsch /* Orthonormalize system */ 296606c1a1cSJacob Faibussowitsch for (i = 0; i < m; ++i) { 297b77f2eeeSJacob Faibussowitsch PetscScalar dots[6]; 2985a0e29b9SJacob Faibussowitsch 2999566063dSJacob Faibussowitsch PetscCall(VecNormalize(mode[i], NULL)); 3009566063dSJacob Faibussowitsch PetscCall(VecMDot(mode[i], m - i - 1, mode + i + 1, dots + i + 1)); 3015a0e29b9SJacob Faibussowitsch for (j = i + 1; j < m; ++j) { 302b77f2eeeSJacob Faibussowitsch dots[j] *= -1.0; 3039566063dSJacob Faibussowitsch PetscCall(VecAXPY(mode[j], dots[j], mode[i])); 3045a0e29b9SJacob Faibussowitsch } 30512adca46SMatthew G. Knepley } 3069566063dSJacob Faibussowitsch PetscCall(MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp)); 3079566063dSJacob Faibussowitsch for (i = 0; i < m; ++i) PetscCall(VecDestroy(&mode[i])); 3089566063dSJacob Faibussowitsch PetscCall(PetscFree2(mode, dots)); 3093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31012adca46SMatthew G. Knepley } 31112adca46SMatthew G. Knepley 312b29cfa1cSToby Isaac /*@ 313b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 314b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 315b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 316b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 317b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 318b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 319b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 320b29cfa1cSToby Isaac 321b29cfa1cSToby Isaac Input Parameters: 322a1cb98faSBarry Smith + dm - the `DMPLEX` object 323b29cfa1cSToby Isaac - height - the maximum projection height >= 0 324b29cfa1cSToby Isaac 325b29cfa1cSToby Isaac Level: advanced 326b29cfa1cSToby Isaac 327a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 328b29cfa1cSToby Isaac @*/ 329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 330d71ae5a4SJacob Faibussowitsch { 331b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 332b29cfa1cSToby Isaac 333b29cfa1cSToby Isaac PetscFunctionBegin; 334b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 335b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 3363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 337b29cfa1cSToby Isaac } 338b29cfa1cSToby Isaac 339b29cfa1cSToby Isaac /*@ 340b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 341b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 342b29cfa1cSToby Isaac 343b29cfa1cSToby Isaac Input Parameters: 344a1cb98faSBarry Smith . dm - the `DMPLEX` object 345b29cfa1cSToby Isaac 346b29cfa1cSToby Isaac Output Parameters: 347b29cfa1cSToby Isaac . height - the maximum projection height 348b29cfa1cSToby Isaac 349b29cfa1cSToby Isaac Level: intermediate 350b29cfa1cSToby Isaac 351a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSetMaxProjectionHeight()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()` 352b29cfa1cSToby Isaac @*/ 353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 354d71ae5a4SJacob Faibussowitsch { 355b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *)dm->data; 356b29cfa1cSToby Isaac 357b29cfa1cSToby Isaac PetscFunctionBegin; 358b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 359b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 3603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 361b29cfa1cSToby Isaac } 362b29cfa1cSToby Isaac 363ca3d3a14SMatthew G. Knepley typedef struct { 364ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 365ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 366ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 367ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 368ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 369ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 370ca3d3a14SMatthew G. Knepley } RotCtx; 371ca3d3a14SMatthew G. Knepley 372ca3d3a14SMatthew G. Knepley /* 373ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 374ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 375ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 376ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 377ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 378ca3d3a14SMatthew G. Knepley */ 379d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 380d71ae5a4SJacob Faibussowitsch { 381ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 382ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 383ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 384ca3d3a14SMatthew G. Knepley 385ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 3869566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT)); 387ca3d3a14SMatthew G. Knepley switch (dim) { 388ca3d3a14SMatthew G. Knepley case 2: 3899371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 3909371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 3919371c9d4SSatish Balay rc->R[0] = c1; 3929371c9d4SSatish Balay rc->R[1] = s1; 3939371c9d4SSatish Balay rc->R[2] = -s1; 3949371c9d4SSatish Balay rc->R[3] = c1; 3959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 396b458e8f1SJose E. Roman DMPlex_Transpose2D_Internal(rc->RT); 397ca3d3a14SMatthew G. Knepley break; 398ca3d3a14SMatthew G. Knepley case 3: 3999371c9d4SSatish Balay c1 = PetscCosReal(rc->alpha); 4009371c9d4SSatish Balay s1 = PetscSinReal(rc->alpha); 4019371c9d4SSatish Balay c2 = PetscCosReal(rc->beta); 4029371c9d4SSatish Balay s2 = PetscSinReal(rc->beta); 4039371c9d4SSatish Balay c3 = PetscCosReal(rc->gamma); 4049371c9d4SSatish Balay s3 = PetscSinReal(rc->gamma); 4059371c9d4SSatish Balay rc->R[0] = c1 * c3 - c2 * s1 * s3; 4069371c9d4SSatish Balay rc->R[1] = c3 * s1 + c1 * c2 * s3; 4079371c9d4SSatish Balay rc->R[2] = s2 * s3; 4089371c9d4SSatish Balay rc->R[3] = -c1 * s3 - c2 * c3 * s1; 4099371c9d4SSatish Balay rc->R[4] = c1 * c2 * c3 - s1 * s3; 4109371c9d4SSatish Balay rc->R[5] = c3 * s2; 4119371c9d4SSatish Balay rc->R[6] = s1 * s2; 4129371c9d4SSatish Balay rc->R[7] = -c1 * s2; 4139371c9d4SSatish Balay rc->R[8] = c2; 4149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(rc->RT, rc->R, PetscSqr(dim))); 415b458e8f1SJose E. Roman DMPlex_Transpose3D_Internal(rc->RT); 416ca3d3a14SMatthew G. Knepley break; 417d71ae5a4SJacob Faibussowitsch default: 418d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %" PetscInt_FMT " not supported", dim); 419ca3d3a14SMatthew G. Knepley } 4203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 421ca3d3a14SMatthew G. Knepley } 422ca3d3a14SMatthew G. Knepley 423d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 424d71ae5a4SJacob Faibussowitsch { 425ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 426ca3d3a14SMatthew G. Knepley 427ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 4289566063dSJacob Faibussowitsch PetscCall(PetscFree2(rc->R, rc->RT)); 4299566063dSJacob Faibussowitsch PetscCall(PetscFree(rc)); 4303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 431ca3d3a14SMatthew G. Knepley } 432ca3d3a14SMatthew G. Knepley 433d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 434d71ae5a4SJacob Faibussowitsch { 435ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *)ctx; 436ca3d3a14SMatthew G. Knepley 437ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 438ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 4399371c9d4SSatish Balay if (l2g) { 4409371c9d4SSatish Balay *A = rc->R; 4419371c9d4SSatish Balay } else { 4429371c9d4SSatish Balay *A = rc->RT; 4439371c9d4SSatish Balay } 4443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 445ca3d3a14SMatthew G. Knepley } 446ca3d3a14SMatthew G. Knepley 447d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 448d71ae5a4SJacob Faibussowitsch { 449ec277c0fSMatthew G. Knepley PetscFunctionBegin; 450ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 451ab6a9622SMatthew G. Knepley switch (dim) { 4529371c9d4SSatish Balay case 2: { 45327104ee2SJacob Faibussowitsch PetscScalar yt[2] = {y[0], y[1]}, zt[2] = {0.0, 0.0}; 454ab6a9622SMatthew G. Knepley 4559566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4569371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4579371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4589371c9d4SSatish Balay } break; 4599371c9d4SSatish Balay case 3: { 46027104ee2SJacob Faibussowitsch PetscScalar yt[3] = {y[0], y[1], y[2]}, zt[3] = {0.0, 0.0, 0.0}; 461ab6a9622SMatthew G. Knepley 4629566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx)); 4639371c9d4SSatish Balay z[0] = PetscRealPart(zt[0]); 4649371c9d4SSatish Balay z[1] = PetscRealPart(zt[1]); 4659371c9d4SSatish Balay z[2] = PetscRealPart(zt[2]); 4669371c9d4SSatish Balay } break; 467ab6a9622SMatthew G. Knepley } 468ab6a9622SMatthew G. Knepley #else 4699566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx)); 470ab6a9622SMatthew G. Knepley #endif 4713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472ab6a9622SMatthew G. Knepley } 473ab6a9622SMatthew G. Knepley 474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 475d71ae5a4SJacob Faibussowitsch { 476ca3d3a14SMatthew G. Knepley const PetscScalar *A; 477ca3d3a14SMatthew G. Knepley 478ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4799566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, l2g, &A, ctx)); 480ca3d3a14SMatthew G. Knepley switch (dim) { 481d71ae5a4SJacob Faibussowitsch case 2: 482d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(A, 1, y, z); 483d71ae5a4SJacob Faibussowitsch break; 484d71ae5a4SJacob Faibussowitsch case 3: 485d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(A, 1, y, z); 486d71ae5a4SJacob Faibussowitsch break; 487ca3d3a14SMatthew G. Knepley } 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489ca3d3a14SMatthew G. Knepley } 490ca3d3a14SMatthew G. Knepley 491d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 492d71ae5a4SJacob Faibussowitsch { 493ca3d3a14SMatthew G. Knepley PetscSection ts; 494ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 495ca3d3a14SMatthew G. Knepley PetscInt dof; 496ca3d3a14SMatthew G. Knepley 497ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 4989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 4999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5019566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, p, f, ta, &tva)); 502ca3d3a14SMatthew G. Knepley if (l2g) { 503ca3d3a14SMatthew G. Knepley switch (dof) { 504d71ae5a4SJacob Faibussowitsch case 4: 505d71ae5a4SJacob Faibussowitsch DMPlex_Mult2D_Internal(tva, 1, a, a); 506d71ae5a4SJacob Faibussowitsch break; 507d71ae5a4SJacob Faibussowitsch case 9: 508d71ae5a4SJacob Faibussowitsch DMPlex_Mult3D_Internal(tva, 1, a, a); 509d71ae5a4SJacob Faibussowitsch break; 510ca3d3a14SMatthew G. Knepley } 511ca3d3a14SMatthew G. Knepley } else { 512ca3d3a14SMatthew G. Knepley switch (dof) { 513d71ae5a4SJacob Faibussowitsch case 4: 514d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose2D_Internal(tva, 1, a, a); 515d71ae5a4SJacob Faibussowitsch break; 516d71ae5a4SJacob Faibussowitsch case 9: 517d71ae5a4SJacob Faibussowitsch DMPlex_MultTranspose3D_Internal(tva, 1, a, a); 518d71ae5a4SJacob Faibussowitsch break; 519ca3d3a14SMatthew G. Knepley } 520ca3d3a14SMatthew G. Knepley } 5219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 5223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 523ca3d3a14SMatthew G. Knepley } 524ca3d3a14SMatthew G. Knepley 525d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 526d71ae5a4SJacob Faibussowitsch { 527ca3d3a14SMatthew G. Knepley PetscSection s, ts; 528ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 529ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 530ca3d3a14SMatthew G. Knepley 531ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 5329566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5339566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pf, f, &fpdof)); 5359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, pg, g, &gpdof)); 5369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pf, f, &fdof)); 5379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, pg, g, &gdof)); 5389566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pf, f, ta, &tvaf)); 5409566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(tdm, pg, g, ta, &tvag)); 541ca3d3a14SMatthew G. Knepley if (l2g) { 542ca3d3a14SMatthew G. Knepley switch (fdof) { 543d71ae5a4SJacob Faibussowitsch case 4: 544d71ae5a4SJacob Faibussowitsch DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a); 545d71ae5a4SJacob Faibussowitsch break; 546d71ae5a4SJacob Faibussowitsch case 9: 547d71ae5a4SJacob Faibussowitsch DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a); 548d71ae5a4SJacob Faibussowitsch break; 549ca3d3a14SMatthew G. Knepley } 550ca3d3a14SMatthew G. Knepley switch (gdof) { 551d71ae5a4SJacob Faibussowitsch case 4: 552d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a); 553d71ae5a4SJacob Faibussowitsch break; 554d71ae5a4SJacob Faibussowitsch case 9: 555d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a); 556d71ae5a4SJacob Faibussowitsch break; 557ca3d3a14SMatthew G. Knepley } 558ca3d3a14SMatthew G. Knepley } else { 559ca3d3a14SMatthew G. Knepley switch (fdof) { 560d71ae5a4SJacob Faibussowitsch case 4: 561d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a); 562d71ae5a4SJacob Faibussowitsch break; 563d71ae5a4SJacob Faibussowitsch case 9: 564d71ae5a4SJacob Faibussowitsch DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a); 565d71ae5a4SJacob Faibussowitsch break; 566ca3d3a14SMatthew G. Knepley } 567ca3d3a14SMatthew G. Knepley switch (gdof) { 568d71ae5a4SJacob Faibussowitsch case 4: 569d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a); 570d71ae5a4SJacob Faibussowitsch break; 571d71ae5a4SJacob Faibussowitsch case 9: 572d71ae5a4SJacob Faibussowitsch DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a); 573d71ae5a4SJacob Faibussowitsch break; 574ca3d3a14SMatthew G. Knepley } 575ca3d3a14SMatthew G. Knepley } 5769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 5773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 578ca3d3a14SMatthew G. Knepley } 579ca3d3a14SMatthew G. Knepley 580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 581d71ae5a4SJacob Faibussowitsch { 582ca3d3a14SMatthew G. Knepley PetscSection s; 583ca3d3a14SMatthew G. Knepley PetscSection clSection; 584ca3d3a14SMatthew G. Knepley IS clPoints; 585ca3d3a14SMatthew G. Knepley const PetscInt *clp; 586ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 587ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 588ca3d3a14SMatthew G. Knepley 589ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 5909566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 5919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 5929566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 593ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 594ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np * 2; cp += 2) { 5959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cp], f, &dof)); 596ca3d3a14SMatthew G. Knepley if (!dof) continue; 5979566063dSJacob Faibussowitsch if (fieldActive[f]) PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d])); 598ca3d3a14SMatthew G. Knepley d += dof; 599ca3d3a14SMatthew G. Knepley } 600ca3d3a14SMatthew G. Knepley } 6019566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 6023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 603ca3d3a14SMatthew G. Knepley } 604ca3d3a14SMatthew G. Knepley 605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 606d71ae5a4SJacob Faibussowitsch { 607ca3d3a14SMatthew G. Knepley PetscSection s; 608ca3d3a14SMatthew G. Knepley PetscSection clSection; 609ca3d3a14SMatthew G. Knepley IS clPoints; 610ca3d3a14SMatthew G. Knepley const PetscInt *clp; 611ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 6128bdb3c71SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c = 0; 613ca3d3a14SMatthew G. Knepley 614ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6159566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6179566063dSJacob Faibussowitsch PetscCall(DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 618ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 619ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np * 2; cpf += 2) { 6209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpf], f, &fdof)); 621ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 622ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np * 2; cpg += 2) { 6239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, points[cpg], g, &gdof)); 6249566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r * lda + c])); 625ca3d3a14SMatthew G. Knepley c += gdof; 626ca3d3a14SMatthew G. Knepley } 627ca3d3a14SMatthew G. Knepley } 62863a3b9bcSJacob Faibussowitsch PetscCheck(c == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 629ca3d3a14SMatthew G. Knepley r += fdof; 630ca3d3a14SMatthew G. Knepley } 631ca3d3a14SMatthew G. Knepley } 63263a3b9bcSJacob Faibussowitsch PetscCheck(r == lda, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %" PetscInt_FMT " should be %" PetscInt_FMT, c, lda); 6339566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 635ca3d3a14SMatthew G. Knepley } 636ca3d3a14SMatthew G. Knepley 637d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 638d71ae5a4SJacob Faibussowitsch { 639ca3d3a14SMatthew G. Knepley DM tdm; 640ca3d3a14SMatthew G. Knepley Vec tv; 641ca3d3a14SMatthew G. Knepley PetscSection ts, s; 642ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 643ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 644ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 645ca3d3a14SMatthew G. Knepley 646ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 6479566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 6489566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 6499566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(tdm, &ts)); 6509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 6519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 6529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 6539566063dSJacob Faibussowitsch PetscCall(VecGetArray(lv, &a)); 6549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tv, &ta)); 655ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 656ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 6579566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, p, f, a, &va)); 6589566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va)); 659ca3d3a14SMatthew G. Knepley } 660ca3d3a14SMatthew G. Knepley } 6619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lv, &a)); 6629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tv, &ta)); 6633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 664ca3d3a14SMatthew G. Knepley } 665ca3d3a14SMatthew G. Knepley 666ca3d3a14SMatthew G. Knepley /*@ 667ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 668ca3d3a14SMatthew G. Knepley 669ca3d3a14SMatthew G. Knepley Input Parameters: 670a1cb98faSBarry Smith + dm - The `DM` 671ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 672ca3d3a14SMatthew G. Knepley 673ca3d3a14SMatthew G. Knepley Output Parameters: 674ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 675ca3d3a14SMatthew G. Knepley 676ca3d3a14SMatthew G. Knepley Level: developer 677ca3d3a14SMatthew G. Knepley 678a1cb98faSBarry Smith Note: 679a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user will have a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 680a1cb98faSBarry Smith 681a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexLocalToGlobalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 682ca3d3a14SMatthew G. Knepley @*/ 683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 684d71ae5a4SJacob Faibussowitsch { 685ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 686ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 687ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 6889566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE)); 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 690ca3d3a14SMatthew G. Knepley } 691ca3d3a14SMatthew G. Knepley 692ca3d3a14SMatthew G. Knepley /*@ 693ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 694ca3d3a14SMatthew G. Knepley 695ca3d3a14SMatthew G. Knepley Input Parameters: 696a1cb98faSBarry Smith + dm - The `DM` 697ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 698ca3d3a14SMatthew G. Knepley 699ca3d3a14SMatthew G. Knepley Output Parameters: 700ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 701ca3d3a14SMatthew G. Knepley 702ca3d3a14SMatthew G. Knepley Level: developer 703ca3d3a14SMatthew G. Knepley 704a1cb98faSBarry Smith Note: 705a1cb98faSBarry Smith This method is only intended to be called inside `DMGlobalToLocal()`. It is unlikely that a user would want a local vector full of coefficients for the global basis unless they are reimplementing GlobalToLocal. 706a1cb98faSBarry Smith 707a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMGetLocalSection()`, `DMPlexCreateBasisRotation()` 708ca3d3a14SMatthew G. Knepley @*/ 709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 710d71ae5a4SJacob Faibussowitsch { 711ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 712ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 713ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 7149566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE)); 7153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 716ca3d3a14SMatthew G. Knepley } 717ca3d3a14SMatthew G. Knepley 718ca3d3a14SMatthew G. Knepley /*@ 719ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 720ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 721ca3d3a14SMatthew G. Knepley 722ca3d3a14SMatthew G. Knepley Input Parameters: 723a1cb98faSBarry Smith + dm - The `DM` 724ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 725ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 726f0fc11ceSJed Brown - gamma - The third Euler angle 727ca3d3a14SMatthew G. Knepley 728ca3d3a14SMatthew G. Knepley Level: developer 729ca3d3a14SMatthew G. Knepley 730a1cb98faSBarry Smith Note: 731a1cb98faSBarry Smith Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 732a1cb98faSBarry Smith we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows 733a1cb98faSBarry Smith .vb 734a1cb98faSBarry Smith The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 735a1cb98faSBarry Smith The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 736a1cb98faSBarry Smith The XYZ system rotates a third time about the z axis by gamma. 737a1cb98faSBarry Smith .ve 738a1cb98faSBarry Smith 739a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()` 740ca3d3a14SMatthew G. Knepley @*/ 741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 742d71ae5a4SJacob Faibussowitsch { 743ca3d3a14SMatthew G. Knepley RotCtx *rc; 744ca3d3a14SMatthew G. Knepley PetscInt cdim; 745ca3d3a14SMatthew G. Knepley 746362febeeSStefano Zampini PetscFunctionBegin; 7479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 7489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &rc)); 749ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 750ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 751ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 752ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 753ca3d3a14SMatthew G. Knepley rc->dim = cdim; 754ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 755ca3d3a14SMatthew G. Knepley rc->beta = beta; 756ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 7579566063dSJacob Faibussowitsch PetscCall((*dm->transformSetUp)(dm, dm->transformCtx)); 7589566063dSJacob Faibussowitsch PetscCall(DMConstructBasisTransform_Internal(dm)); 7593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 760ca3d3a14SMatthew G. Knepley } 761ca3d3a14SMatthew G. Knepley 762b278463cSMatthew G. Knepley /*@C 763ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector using a function of the coordinates 764b278463cSMatthew G. Knepley 765b278463cSMatthew G. Knepley Input Parameters: 766a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 767b278463cSMatthew G. Knepley . time - The time 768b278463cSMatthew G. Knepley . field - The field to constrain 7691c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7701c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 771a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 772a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 773b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 774b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 775b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 776b278463cSMatthew G. Knepley 777b278463cSMatthew G. Knepley Output Parameter: 778b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 779b278463cSMatthew G. Knepley 780b278463cSMatthew G. Knepley Level: developer 781b278463cSMatthew G. Knepley 782a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMLabel`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 783b278463cSMatthew G. Knepley @*/ 784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 785d71ae5a4SJacob Faibussowitsch { 7860163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 78755f2e967SMatthew G. Knepley void **ctxs; 788d7ddef95SMatthew G. Knepley PetscInt numFields; 789d7ddef95SMatthew G. Knepley 790d7ddef95SMatthew G. Knepley PetscFunctionBegin; 7919566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 7929566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 793d7ddef95SMatthew G. Knepley funcs[field] = func; 794d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7959566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX)); 7969566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 7973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 798d7ddef95SMatthew G. Knepley } 799d7ddef95SMatthew G. Knepley 800b278463cSMatthew G. Knepley /*@C 801ece3a9fcSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector using a function of the coordinates and field data 802b278463cSMatthew G. Knepley 803b278463cSMatthew G. Knepley Input Parameters: 804a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 805b278463cSMatthew G. Knepley . time - The time 806b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 807b278463cSMatthew G. Knepley . field - The field to constrain 8081c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8091c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 810a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 811a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 812b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 813b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 814b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 815b278463cSMatthew G. Knepley 816b278463cSMatthew G. Knepley Output Parameter: 817b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 818b278463cSMatthew G. Knepley 819b278463cSMatthew G. Knepley Level: developer 820b278463cSMatthew G. Knepley 821a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialBdField()`, `DMAddBoundary()` 822b278463cSMatthew G. Knepley @*/ 823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 824d71ae5a4SJacob Faibussowitsch { 8259371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 826c60e475cSMatthew G. Knepley void **ctxs; 827c60e475cSMatthew G. Knepley PetscInt numFields; 828c60e475cSMatthew G. Knepley 829c60e475cSMatthew G. Knepley PetscFunctionBegin; 8309566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8319566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 832c60e475cSMatthew G. Knepley funcs[field] = func; 833c60e475cSMatthew G. Knepley ctxs[field] = ctx; 8349566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8359566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 8363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 837c60e475cSMatthew G. Knepley } 838c60e475cSMatthew G. Knepley 839b278463cSMatthew G. Knepley /*@C 840d5b43468SJose E. Roman DMPlexInsertBoundaryValuesEssentialBdField - Insert boundary values into a local vector using a function of the coordinates and boundary field data 841ece3a9fcSMatthew G. Knepley 842ece3a9fcSMatthew G. Knepley Collective on dm 843ece3a9fcSMatthew G. Knepley 844ece3a9fcSMatthew G. Knepley Input Parameters: 845a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 846ece3a9fcSMatthew G. Knepley . time - The time 847ece3a9fcSMatthew G. Knepley . locU - A local vector with the input solution values 848ece3a9fcSMatthew G. Knepley . field - The field to constrain 849ece3a9fcSMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 850ece3a9fcSMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 851a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 852a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 853ece3a9fcSMatthew G. Knepley . ids - An array of ids for constrained points 854ece3a9fcSMatthew G. Knepley . func - A pointwise function giving boundary values, the calling sequence is given in DMProjectBdFieldLabelLocal() 855ece3a9fcSMatthew G. Knepley - ctx - An optional user context for bcFunc 856ece3a9fcSMatthew G. Knepley 857ece3a9fcSMatthew G. Knepley Output Parameter: 858ece3a9fcSMatthew G. Knepley . locX - A local vector to receive the boundary values 859ece3a9fcSMatthew G. Knepley 860ece3a9fcSMatthew G. Knepley Level: developer 861ece3a9fcSMatthew G. Knepley 862a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectBdFieldLabelLocal()`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 863ece3a9fcSMatthew G. Knepley @*/ 864d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesEssentialBdField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), void *ctx, Vec locX) 865d71ae5a4SJacob Faibussowitsch { 8669371c9d4SSatish Balay void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 867ece3a9fcSMatthew G. Knepley void **ctxs; 868ece3a9fcSMatthew G. Knepley PetscInt numFields; 869ece3a9fcSMatthew G. Knepley 870ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8719566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 8729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFields, &funcs, numFields, &ctxs)); 873ece3a9fcSMatthew G. Knepley funcs[field] = func; 874ece3a9fcSMatthew G. Knepley ctxs[field] = ctx; 8759566063dSJacob Faibussowitsch PetscCall(DMProjectBdFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX)); 8769566063dSJacob Faibussowitsch PetscCall(PetscFree2(funcs, ctxs)); 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878ece3a9fcSMatthew G. Knepley } 879ece3a9fcSMatthew G. Knepley 880ece3a9fcSMatthew G. Knepley /*@C 881b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 882b278463cSMatthew G. Knepley 883b278463cSMatthew G. Knepley Input Parameters: 884a1cb98faSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 885b278463cSMatthew G. Knepley . time - The time 886b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 887b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 888b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 889b278463cSMatthew G. Knepley . field - The field to constrain 8901c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8911c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 892a1cb98faSBarry Smith . label - The `DMLabel` defining constrained points 893a1cb98faSBarry Smith . numids - The number of `DMLabel` ids for constrained points 894b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 895b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 896b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 897b278463cSMatthew G. Knepley 898b278463cSMatthew G. Knepley Output Parameter: 899b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 900b278463cSMatthew G. Knepley 901b278463cSMatthew G. Knepley Level: developer 902b278463cSMatthew G. Knepley 903a1cb98faSBarry Smith Note: 904a1cb98faSBarry Smith This implementation currently ignores the numcomps/comps argument from `DMAddBoundary()` 905a1cb98faSBarry Smith 906a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexInsertBoundaryValuesEssential()`, `DMPlexInsertBoundaryValuesEssentialField()`, `DMAddBoundary()` 907b278463cSMatthew G. Knepley @*/ 908d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *), void *ctx, Vec locX) 909d71ae5a4SJacob Faibussowitsch { 91061f58d28SMatthew G. Knepley PetscDS prob; 911da97024aSMatthew G. Knepley PetscSF sf; 912d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 91320369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 914da97024aSMatthew G. Knepley const PetscInt *leaves; 915d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 916520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 9173ba16761SJacob Faibussowitsch PetscErrorCode ierru = PETSC_SUCCESS; 918d7ddef95SMatthew G. Knepley 919d7ddef95SMatthew G. Knepley PetscFunctionBegin; 9209566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 922da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 9239566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9249566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 9259566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 9269566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 9279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 92820369375SToby Isaac if (cellGeometry) { 9299566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 9309566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 93120369375SToby Isaac } 932d7ddef95SMatthew G. Knepley if (Grad) { 933c0a6632aSMatthew G. Knepley PetscFV fv; 934c0a6632aSMatthew G. Knepley 9359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fv)); 9369566063dSJacob Faibussowitsch PetscCall(VecGetDM(Grad, &dmGrad)); 9379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Grad, &grad)); 9389566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 9399566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 940d7ddef95SMatthew G. Knepley } 9419566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX, &x)); 942d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 943d7ddef95SMatthew G. Knepley IS faceIS; 944d7ddef95SMatthew G. Knepley const PetscInt *faces; 945d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 946d7ddef95SMatthew G. Knepley 9479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, ids[i], &faceIS)); 948d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 9499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 951d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 952d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 953640bce14SSatish Balay PetscFVFaceGeom *fg; 954d7ddef95SMatthew G. Knepley 955d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 9569566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, nleaves, (PetscInt *)leaves, &loc)); 957da97024aSMatthew G. Knepley if (loc >= 0) continue; 9589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 9599566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 960d7ddef95SMatthew G. Knepley if (Grad) { 961640bce14SSatish Balay PetscFVCellGeom *cg; 962640bce14SSatish Balay PetscScalar *cx, *cgrad; 963d7ddef95SMatthew G. Knepley PetscScalar *xG; 964d7ddef95SMatthew G. Knepley PetscReal dx[3]; 965d7ddef95SMatthew G. Knepley PetscInt d; 966d7ddef95SMatthew G. Knepley 9679566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg)); 9689566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &cx)); 9699566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad)); 9709566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 971d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 972d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d * dim], dx); 9739566063dSJacob Faibussowitsch PetscCall((*func)(time, fg->centroid, fg->normal, fx, xG, ctx)); 974d7ddef95SMatthew G. Knepley } else { 975640bce14SSatish Balay PetscScalar *xI; 976d7ddef95SMatthew G. Knepley PetscScalar *xG; 977d7ddef95SMatthew G. Knepley 9789566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dm, cells[0], x, &xI)); 9799566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG)); 980e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 981e735a8a9SMatthew G. Knepley if (ierru) { 9829566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 984e735a8a9SMatthew G. Knepley goto cleanup; 985e735a8a9SMatthew G. Knepley } 986d7ddef95SMatthew G. Knepley } 987d7ddef95SMatthew G. Knepley } 9889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 990d7ddef95SMatthew G. Knepley } 991e735a8a9SMatthew G. Knepley cleanup: 9929566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX, &x)); 993d7ddef95SMatthew G. Knepley if (Grad) { 9949566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx)); 9959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Grad, &grad)); 996d7ddef95SMatthew G. Knepley } 9979566063dSJacob Faibussowitsch if (cellGeometry) PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 9989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 9999566063dSJacob Faibussowitsch PetscCall(ierru); 10003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1001d7ddef95SMatthew G. Knepley } 1002d7ddef95SMatthew G. Knepley 1003d71ae5a4SJacob Faibussowitsch static PetscErrorCode zero(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 1004d71ae5a4SJacob Faibussowitsch { 10050c364540SMatthew G. Knepley PetscInt c; 10060c364540SMatthew G. Knepley for (c = 0; c < Nc; ++c) u[c] = 0.0; 10073ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 10080c364540SMatthew G. Knepley } 10090c364540SMatthew G. Knepley 1010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1011d71ae5a4SJacob Faibussowitsch { 10120c364540SMatthew G. Knepley PetscObject isZero; 1013e5e52638SMatthew G. Knepley PetscDS prob; 1014d7ddef95SMatthew G. Knepley PetscInt numBd, b; 101555f2e967SMatthew G. Knepley 101655f2e967SMatthew G. Knepley PetscFunctionBegin; 10179566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10189566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 102055f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 102145480ffeSMatthew G. Knepley PetscWeakForm wf; 1022f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 102345480ffeSMatthew G. Knepley const char *name; 1024d7ddef95SMatthew G. Knepley DMLabel label; 10251c531cf8SMatthew G. Knepley PetscInt field, Nc; 10261c531cf8SMatthew G. Knepley const PetscInt *comps; 1027d7ddef95SMatthew G. Knepley PetscObject obj; 1028d7ddef95SMatthew G. Knepley PetscClassId id; 102945480ffeSMatthew G. Knepley void (*bvfunc)(void); 1030d7ddef95SMatthew G. Knepley PetscInt numids; 1031d7ddef95SMatthew G. Knepley const PetscInt *ids; 103255f2e967SMatthew G. Knepley void *ctx; 103355f2e967SMatthew G. Knepley 10349566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 1035f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10369566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1038d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1039c60e475cSMatthew G. Knepley switch (type) { 1040c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 10419371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 104245480ffeSMatthew G. Knepley PetscSimplePointFunc func = (PetscSimplePointFunc)bvfunc; 104345480ffeSMatthew G. Knepley 104445480ffeSMatthew G. Knepley if (isZero) func = zero; 10459566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10469566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10479566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10489371c9d4SSatish Balay } break; 10499371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 105045480ffeSMatthew G. Knepley PetscPointFunc func = (PetscPointFunc)bvfunc; 105145480ffeSMatthew G. Knepley 10529566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 10539566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func, ctx, locX)); 10549566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 10559371c9d4SSatish Balay } break; 1056d71ae5a4SJacob Faibussowitsch default: 1057d71ae5a4SJacob Faibussowitsch break; 1058c60e475cSMatthew G. Knepley } 1059d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 106045480ffeSMatthew G. Knepley { 106145480ffeSMatthew G. Knepley PetscErrorCode (*func)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *) = (PetscErrorCode(*)(PetscReal, const PetscReal *, const PetscReal *, const PetscScalar *, PetscScalar *, void *))bvfunc; 106245480ffeSMatthew G. Knepley 106343ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 10649566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, func, ctx, locX)); 106545480ffeSMatthew G. Knepley } 106663a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 106755f2e967SMatthew G. Knepley } 10683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106955f2e967SMatthew G. Knepley } 107055f2e967SMatthew G. Knepley 1071d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1072d71ae5a4SJacob Faibussowitsch { 107356cf3b9cSMatthew G. Knepley PetscObject isZero; 107456cf3b9cSMatthew G. Knepley PetscDS prob; 107556cf3b9cSMatthew G. Knepley PetscInt numBd, b; 107656cf3b9cSMatthew G. Knepley 107756cf3b9cSMatthew G. Knepley PetscFunctionBegin; 10783ba16761SJacob Faibussowitsch if (!locX) PetscFunctionReturn(PETSC_SUCCESS); 10799566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 10809566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 10819566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)locX, "__Vec_bc_zero__", &isZero)); 108256cf3b9cSMatthew G. Knepley for (b = 0; b < numBd; ++b) { 108345480ffeSMatthew G. Knepley PetscWeakForm wf; 108456cf3b9cSMatthew G. Knepley DMBoundaryConditionType type; 108545480ffeSMatthew G. Knepley const char *name; 108656cf3b9cSMatthew G. Knepley DMLabel label; 108756cf3b9cSMatthew G. Knepley PetscInt field, Nc; 108856cf3b9cSMatthew G. Knepley const PetscInt *comps; 108956cf3b9cSMatthew G. Knepley PetscObject obj; 109056cf3b9cSMatthew G. Knepley PetscClassId id; 109156cf3b9cSMatthew G. Knepley PetscInt numids; 109256cf3b9cSMatthew G. Knepley const PetscInt *ids; 109345480ffeSMatthew G. Knepley void (*bvfunc)(void); 109456cf3b9cSMatthew G. Knepley void *ctx; 109556cf3b9cSMatthew G. Knepley 10969566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, NULL, &bvfunc, &ctx)); 109756cf3b9cSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 10989566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 10999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 110056cf3b9cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 110156cf3b9cSMatthew G. Knepley switch (type) { 110256cf3b9cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 11039371c9d4SSatish Balay case DM_BC_ESSENTIAL: { 110445480ffeSMatthew G. Knepley PetscSimplePointFunc func_t = (PetscSimplePointFunc)bvfunc; 110545480ffeSMatthew G. Knepley 110645480ffeSMatthew G. Knepley if (isZero) func_t = zero; 11079566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11089566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11099566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11109371c9d4SSatish Balay } break; 11119371c9d4SSatish Balay case DM_BC_ESSENTIAL_FIELD: { 111245480ffeSMatthew G. Knepley PetscPointFunc func_t = (PetscPointFunc)bvfunc; 111345480ffeSMatthew G. Knepley 11149566063dSJacob Faibussowitsch PetscCall(DMPlexLabelAddCells(dm, label)); 11159566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, func_t, ctx, locX)); 11169566063dSJacob Faibussowitsch PetscCall(DMPlexLabelClearCells(dm, label)); 11179371c9d4SSatish Balay } break; 1118d71ae5a4SJacob Faibussowitsch default: 1119d71ae5a4SJacob Faibussowitsch break; 112056cf3b9cSMatthew G. Knepley } 112163a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 112256cf3b9cSMatthew G. Knepley } 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112456cf3b9cSMatthew G. Knepley } 112556cf3b9cSMatthew G. Knepley 1126f1d73a7aSMatthew G. Knepley /*@ 1127f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 1128f1d73a7aSMatthew G. Knepley 1129ed808b8fSJed Brown Not Collective 1130ed808b8fSJed Brown 1131f1d73a7aSMatthew G. Knepley Input Parameters: 1132a1cb98faSBarry Smith + dm - The `DM` 1133f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 1134f1d73a7aSMatthew G. Knepley . time - The time 1135f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 1136f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 1137f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 1138f1d73a7aSMatthew G. Knepley 1139f1d73a7aSMatthew G. Knepley Output Parameters: 1140f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 1141f1d73a7aSMatthew G. Knepley 1142ed808b8fSJed Brown Level: intermediate 1143f1d73a7aSMatthew G. Knepley 1144a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()`, `DMAddBoundary()` 1145f1d73a7aSMatthew G. Knepley @*/ 1146d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1147d71ae5a4SJacob Faibussowitsch { 1148f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1149f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1150064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 1151ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1152ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1153ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1154cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX, time, faceGeomFVM, cellGeomFVM, gradFVM)); 11553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1156f1d73a7aSMatthew G. Knepley } 1157f1d73a7aSMatthew G. Knepley 115856cf3b9cSMatthew G. Knepley /*@ 1159a5b23f4aSJose E. Roman DMPlexInsertTimeDerivativeBoundaryValues - Puts coefficients which represent boundary values of the time derivative into the local solution vector 116056cf3b9cSMatthew G. Knepley 116156cf3b9cSMatthew G. Knepley Input Parameters: 1162a1cb98faSBarry Smith + dm - The `DM` 116356cf3b9cSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 116456cf3b9cSMatthew G. Knepley . time - The time 116556cf3b9cSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 116656cf3b9cSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 116756cf3b9cSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 116856cf3b9cSMatthew G. Knepley 116956cf3b9cSMatthew G. Knepley Output Parameters: 117056cf3b9cSMatthew G. Knepley . locX_t - Solution updated with boundary values 117156cf3b9cSMatthew G. Knepley 117256cf3b9cSMatthew G. Knepley Level: developer 117356cf3b9cSMatthew G. Knepley 1174a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunctionLabelLocal()` 117556cf3b9cSMatthew G. Knepley @*/ 1176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexInsertTimeDerivativeBoundaryValues(DM dm, PetscBool insertEssential, Vec locX_t, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1177d71ae5a4SJacob Faibussowitsch { 117856cf3b9cSMatthew G. Knepley PetscFunctionBegin; 117956cf3b9cSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1180ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 3); 1181ad540459SPierre Jolivet if (faceGeomFVM) PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 5); 1182ad540459SPierre Jolivet if (cellGeomFVM) PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 6); 1183ad540459SPierre Jolivet if (gradFVM) PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 7); 1184cac4c232SBarry Smith PetscTryMethod(dm, "DMPlexInsertTimeDerviativeBoundaryValues_C", (DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec), (dm, insertEssential, locX_t, time, faceGeomFVM, cellGeomFVM, gradFVM)); 11853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118656cf3b9cSMatthew G. Knepley } 118756cf3b9cSMatthew G. Knepley 1188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1189d71ae5a4SJacob Faibussowitsch { 1190574a98acSMatthew G. Knepley Vec localX; 1191574a98acSMatthew G. Knepley 1192574a98acSMatthew G. Knepley PetscFunctionBegin; 11939566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 11949566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL)); 11959566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 11969566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 11979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff)); 11989566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 11993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1200574a98acSMatthew G. Knepley } 1201574a98acSMatthew G. Knepley 1202574a98acSMatthew G. Knepley /*@C 1203ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1204574a98acSMatthew G. Knepley 1205d083f849SBarry Smith Collective on dm 1206c0f8e1fdSMatthew G. Knepley 1207574a98acSMatthew G. Knepley Input Parameters: 1208a1cb98faSBarry Smith + dm - The `DM` 1209574a98acSMatthew G. Knepley . time - The time 1210574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1211574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1212574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1213574a98acSMatthew G. Knepley 1214574a98acSMatthew G. Knepley Output Parameter: 1215574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1216574a98acSMatthew G. Knepley 1217574a98acSMatthew G. Knepley Level: developer 1218574a98acSMatthew G. Knepley 1219a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1220574a98acSMatthew G. Knepley @*/ 1221d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1222d71ae5a4SJacob Faibussowitsch { 12230f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1224ca3d3a14SMatthew G. Knepley DM tdm; 1225ca3d3a14SMatthew G. Knepley Vec tv; 1226cb1e1211SMatthew G Knepley PetscSection section; 1227c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 12284bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 122915496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 12304bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 1231cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 12327318780aSToby Isaac const PetscReal *quadWeights; 1233412e9a14SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, c, field, fieldOffset; 1234ca3d3a14SMatthew G. Knepley PetscBool transform; 1235cb1e1211SMatthew G Knepley 1236cb1e1211SMatthew G Knepley PetscFunctionBegin; 12379566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 12392a4e142eSMatthew G. Knepley fegeom.dimEmbed = coordDim; 12409566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 12419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 12429566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 12439566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 12449566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1245cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 124615496722SMatthew G. Knepley PetscObject obj; 124715496722SMatthew G. Knepley PetscClassId id; 1248c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1249c5bbbd5bSMatthew G. Knepley 12509566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 125215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 125315496722SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 125415496722SMatthew G. Knepley 12559566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 12569566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 125715496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 125815496722SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 125915496722SMatthew G. Knepley 12609566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 12619566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 126263a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1263c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1264cb1e1211SMatthew G Knepley } 12659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 126663a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 1267c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * (Nq + 1), &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 12689566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 12699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 1270cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1271a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1272cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 12739c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1274cb1e1211SMatthew G Knepley 12759566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 12769566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1277cb1e1211SMatthew G Knepley 127815496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 127915496722SMatthew G. Knepley PetscObject obj; 128015496722SMatthew G. Knepley PetscClassId id; 1281c110b1eeSGeoffrey Irving void *const ctx = ctxs ? ctxs[field] : NULL; 128215496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1283cb1e1211SMatthew G Knepley 12849566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 12869371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 12879371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 12889371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 12899371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 12909371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 12919371c9d4SSatish Balay Nb = 1; 12929371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1293cb1e1211SMatthew G Knepley if (debug) { 1294cb1e1211SMatthew G Knepley char title[1024]; 129563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 12969566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1297cb1e1211SMatthew G Knepley } 12987318780aSToby Isaac for (q = 0; q < Nq; ++q) { 12992a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1300d0609cedSBarry Smith PetscErrorCode ierr; 13012a4e142eSMatthew G. Knepley 13022a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 13032a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 13042a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 13052a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 130663a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", point %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1307d3a7d86cSMatthew G. Knepley if (transform) { 1308d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 13099566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1310d3a7d86cSMatthew G. Knepley } else { 1311d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1312d3a7d86cSMatthew G. Knepley } 13139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 1314ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1315e735a8a9SMatthew G. Knepley if (ierr) { 13169566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13179566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 13189566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1319e735a8a9SMatthew G. Knepley } 13209566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 13219566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 13229566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 13232df84da0SMatthew G. Knepley else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 132415496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1325beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 13269371c9d4SSatish Balay if (debug) 13279371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g (%g, %g)\n", c, field, fc, (double)(coordDim > 0 ? coords[coordDim * q] : 0.), (double)(coordDim > 1 ? coords[coordDim * q + 1] : 0.), (double)(coordDim > 2 ? coords[coordDim * q + 2] : 0.), 13289371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]), (double)PetscRealPart(interpolant[fc]), (double)PetscRealPart(funcVal[fc]))); 13294bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1330cb1e1211SMatthew G Knepley } 1331cb1e1211SMatthew G Knepley } 13329c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1333beaa55a6SMatthew G. Knepley qc += Nc; 1334cb1e1211SMatthew G Knepley } 13359566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 13369566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 1337cb1e1211SMatthew G Knepley localDiff += elemDiff; 1338cb1e1211SMatthew G Knepley } 13399566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 13401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 1341cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 13423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1343cb1e1211SMatthew G Knepley } 1344cb1e1211SMatthew G Knepley 1345d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1346d71ae5a4SJacob Faibussowitsch { 13470f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1348ca3d3a14SMatthew G. Knepley DM tdm; 1349cb1e1211SMatthew G Knepley PetscSection section; 135040e14135SMatthew G. Knepley PetscQuadrature quad; 1351ca3d3a14SMatthew G. Knepley Vec localX, tv; 13529c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13532a4e142eSMatthew G. Knepley const PetscReal *quadWeights; 13544bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 13554bee2e38SMatthew G. Knepley PetscReal *coords, *gcoords; 135640e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 1357485ad865SMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, c, field, fieldOffset; 1358ca3d3a14SMatthew G. Knepley PetscBool transform; 1359cb1e1211SMatthew G Knepley 1360cb1e1211SMatthew G Knepley PetscFunctionBegin; 13619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 13634bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 13649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 13669566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 13679566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 13689566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 13699566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 13709566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 13719566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 1372652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 13730f2d7e86SMatthew G. Knepley PetscFE fe; 137440e14135SMatthew G. Knepley PetscInt Nc; 1375652b88e8SMatthew G. Knepley 13769566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 13779566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 13789566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 137940e14135SMatthew G. Knepley numComponents += Nc; 1380652b88e8SMatthew G. Knepley } 13819566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights)); 138263a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 13839566063dSJacob Faibussowitsch /* PetscCall(DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX)); */ 1384c9cb6370SYANG Zongze PetscCall(PetscMalloc6(numComponents, &funcVal, coordDim * (Nq + 1), &coords, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ, numComponents * coordDim, &interpolant, Nq, &fegeom.detJ)); 13859566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 138640e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 138740e14135SMatthew G. Knepley PetscScalar *x = NULL; 138840e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 13899c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1390652b88e8SMatthew G. Knepley 13919566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 13929566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 139340e14135SMatthew G. Knepley 13949c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 13950f2d7e86SMatthew G. Knepley PetscFE fe; 139651259fa3SMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 13979c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 139840e14135SMatthew G. Knepley 13999566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, (PetscObject *)&fe)); 14009566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 14019566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 140240e14135SMatthew G. Knepley if (debug) { 140340e14135SMatthew G. Knepley char title[1024]; 14049566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, field)); 14059566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, title, Nb, &x[fieldOffset])); 1406652b88e8SMatthew G. Knepley } 14079c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 14082a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1409d0609cedSBarry Smith PetscErrorCode ierr; 14102a4e142eSMatthew G. Knepley 14112a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 14122a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 14132a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 14142a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 14152df84da0SMatthew G. Knepley PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 1416d3a7d86cSMatthew G. Knepley if (transform) { 1417d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * Nq]; 14189566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim * q], PETSC_TRUE, coordDim, &coords[coordDim * q], gcoords, dm->transformCtx)); 1419d3a7d86cSMatthew G. Knepley } else { 1420d3a7d86cSMatthew G. Knepley gcoords = &coords[coordDim * q]; 1421d3a7d86cSMatthew G. Knepley } 14229566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(funcVal, Nc)); 14234bee2e38SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, n, Nc, funcVal, ctx); 1424e735a8a9SMatthew G. Knepley if (ierr) { 14259566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 14269566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14279566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 1428e735a8a9SMatthew G. Knepley } 14299566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[coordDim * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 14309566063dSJacob Faibussowitsch PetscCall(PetscFEInterpolateGradient_Static(fe, 1, &x[fieldOffset], &qgeom, q, interpolant)); 14314bee2e38SMatthew G. Knepley /* Overwrite with the dot product if the normal is given */ 14324bee2e38SMatthew G. Knepley if (n) { 14334bee2e38SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 14344bee2e38SMatthew G. Knepley PetscScalar sum = 0.0; 14354bee2e38SMatthew G. Knepley PetscInt d; 14364bee2e38SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += interpolant[fc * dim + d] * n[d]; 14374bee2e38SMatthew G. Knepley interpolant[fc] = sum; 14384bee2e38SMatthew G. Knepley } 14394bee2e38SMatthew G. Knepley } 14409c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1441beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 144263a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " fieldDer %" PetscInt_FMT ",%" PetscInt_FMT " diff %g\n", c, field, fc, (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 14434bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 144440e14135SMatthew G. Knepley } 144540e14135SMatthew G. Knepley } 14469c3cf19fSMatthew G. Knepley fieldOffset += Nb; 14479c3cf19fSMatthew G. Knepley qc += Nc; 144840e14135SMatthew G. Knepley } 14499566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 145063a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " elem %" PetscInt_FMT " diff %g\n", c, (double)elemDiff)); 145140e14135SMatthew G. Knepley localDiff += elemDiff; 145240e14135SMatthew G. Knepley } 14539566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, coords, fegeom.J, fegeom.invJ, interpolant, fegeom.detJ)); 14549566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 14551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 145640e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 14573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1458cb1e1211SMatthew G Knepley } 1459cb1e1211SMatthew G Knepley 1460d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1461d71ae5a4SJacob Faibussowitsch { 14620f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex *)dm->data)->printL2; 1463ca3d3a14SMatthew G. Knepley DM tdm; 1464083401c6SMatthew G. Knepley DMLabel depthLabel; 146573d901b8SMatthew G. Knepley PetscSection section; 1466ca3d3a14SMatthew G. Knepley Vec localX, tv; 146773d901b8SMatthew G. Knepley PetscReal *localDiff; 1468083401c6SMatthew G. Knepley PetscInt dim, depth, dE, Nf, f, Nds, s; 1469ca3d3a14SMatthew G. Knepley PetscBool transform; 147073d901b8SMatthew G. Knepley 147173d901b8SMatthew G. Knepley PetscFunctionBegin; 14729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 14739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 14749566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 14759566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 14769566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 14779566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 14789566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 14799566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 14809566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 14819566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(depthLabel, &depth)); 1482083401c6SMatthew G. Knepley 14839566063dSJacob Faibussowitsch PetscCall(VecSet(localX, 0.0)); 14849566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 14859566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 14869566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 14879566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 14889566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nf, &localDiff)); 1489083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 1490083401c6SMatthew G. Knepley PetscDS ds; 1491083401c6SMatthew G. Knepley DMLabel label; 1492083401c6SMatthew G. Knepley IS fieldIS, pointIS; 1493083401c6SMatthew G. Knepley const PetscInt *fields, *points = NULL; 1494083401c6SMatthew G. Knepley PetscQuadrature quad; 1495083401c6SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1496083401c6SMatthew G. Knepley PetscFEGeom fegeom; 1497083401c6SMatthew G. Knepley PetscReal *coords, *gcoords; 1498083401c6SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 14995fedec97SMatthew G. Knepley PetscBool isCohesive; 1500083401c6SMatthew G. Knepley PetscInt qNc, Nq, totNc, cStart = 0, cEnd, c, dsNf; 150173d901b8SMatthew G. Knepley 15029566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 15039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 15049566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 15059566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(ds, &totNc)); 15079566063dSJacob Faibussowitsch PetscCall(PetscDSGetQuadrature(ds, &quad)); 15089566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 150963a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != totNc), PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, totNc); 15109566063dSJacob Faibussowitsch PetscCall(PetscCalloc6(totNc, &funcVal, totNc, &interpolant, dE * (Nq + 1), &coords, Nq, &fegeom.detJ, dE * dE * Nq, &fegeom.J, dE * dE * Nq, &fegeom.invJ)); 1511083401c6SMatthew G. Knepley if (!label) { 15129566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1513083401c6SMatthew G. Knepley } else { 15149566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 15159566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &cEnd)); 15169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 1517083401c6SMatthew G. Knepley } 151873d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1519083401c6SMatthew G. Knepley const PetscInt cell = points ? points[c] : c; 152073d901b8SMatthew G. Knepley PetscScalar *x = NULL; 15215fedec97SMatthew G. Knepley const PetscInt *cone; 15225fedec97SMatthew G. Knepley PetscInt qc = 0, fOff = 0, dep; 152373d901b8SMatthew G. Knepley 15249566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depthLabel, cell, &dep)); 1525083401c6SMatthew G. Knepley if (dep != depth - 1) continue; 15265fedec97SMatthew G. Knepley if (isCohesive) { 15279566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 15289566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cone[0], quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 152996959cd1SMatthew G. Knepley } else { 15309566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 153196959cd1SMatthew G. Knepley } 15329566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, cell, NULL, &x)); 15335fedec97SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 153415496722SMatthew G. Knepley PetscObject obj; 153515496722SMatthew G. Knepley PetscClassId id; 1536083401c6SMatthew G. Knepley void *const ctx = ctxs ? ctxs[fields[f]] : NULL; 153715496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 153815496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 15395fedec97SMatthew G. Knepley PetscBool cohesive; 154015496722SMatthew G. Knepley 15419566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &cohesive)); 15425fedec97SMatthew G. Knepley if (isCohesive && !cohesive) continue; 15439566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 15449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 15459371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 15469371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 15479371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 15489371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 15499371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 15509371c9d4SSatish Balay Nb = 1; 15519371c9d4SSatish Balay } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 155273d901b8SMatthew G. Knepley if (debug) { 155373d901b8SMatthew G. Knepley char title[1024]; 155463a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(title, 1023, "Solution for Field %" PetscInt_FMT, fields[f])); 15559566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(cell, title, Nb, &x[fOff])); 155673d901b8SMatthew G. Knepley } 15577318780aSToby Isaac for (q = 0; q < Nq; ++q) { 15582a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 1559d0609cedSBarry Smith PetscErrorCode ierr; 15602a4e142eSMatthew G. Knepley 15612a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 1562083401c6SMatthew G. Knepley qgeom.J = &fegeom.J[q * dE * dE]; 1563083401c6SMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * dE * dE]; 15642a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 156563a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for cell %" PetscInt_FMT ", quadrature point %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 1566d3a7d86cSMatthew G. Knepley if (transform) { 1567083401c6SMatthew G. Knepley gcoords = &coords[dE * Nq]; 15689566063dSJacob Faibussowitsch PetscCall(DMPlexBasisTransformApplyReal_Internal(dm, &coords[dE * q], PETSC_TRUE, dE, &coords[dE * q], gcoords, dm->transformCtx)); 1569d3a7d86cSMatthew G. Knepley } else { 1570083401c6SMatthew G. Knepley gcoords = &coords[dE * q]; 1571d3a7d86cSMatthew G. Knepley } 15722df84da0SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) funcVal[fc] = 0.; 1573083401c6SMatthew G. Knepley ierr = (*funcs[fields[f]])(dE, time, gcoords, Nc, funcVal, ctx); 1574e735a8a9SMatthew G. Knepley if (ierr) { 15759566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 15769566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 15779566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 1578e735a8a9SMatthew G. Knepley } 15799566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformApply_Internal(dm, &coords[dE * q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx)); 158096959cd1SMatthew G. Knepley /* Call once for each face, except for lagrange field */ 15819566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fOff], &qgeom, q, interpolant)); 15829566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fOff], q, interpolant)); 158363a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, fields[f]); 158415496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1585beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 15869371c9d4SSatish Balay if (debug) 15879371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT ",%" PetscInt_FMT " point %g %g %g diff %g\n", cell, fields[f], fc, (double)(dE > 0 ? coords[dE * q] : 0.), (double)(dE > 1 ? coords[dE * q + 1] : 0.), (double)(dE > 2 ? coords[dE * q + 2] : 0.), 15889371c9d4SSatish Balay (double)(PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]))); 15894bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 159073d901b8SMatthew G. Knepley } 159173d901b8SMatthew G. Knepley } 1592083401c6SMatthew G. Knepley fOff += Nb; 15939c3cf19fSMatthew G. Knepley qc += Nc; 1594083401c6SMatthew G. Knepley localDiff[fields[f]] += elemDiff; 159563a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(PETSC_COMM_SELF, " cell %" PetscInt_FMT " field %" PetscInt_FMT " cum diff %g\n", cell, fields[f], (double)localDiff[fields[f]])); 159673d901b8SMatthew G. Knepley } 15979566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, cell, NULL, &x)); 1598083401c6SMatthew G. Knepley } 1599083401c6SMatthew G. Knepley if (label) { 16009566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 16019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 1602083401c6SMatthew G. Knepley } 16039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 16049566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 160573d901b8SMatthew G. Knepley } 16069566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 16071c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(localDiff, diff, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 16089566063dSJacob Faibussowitsch PetscCall(PetscFree(localDiff)); 1609083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) diff[f] = PetscSqrtReal(diff[f]); 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 161173d901b8SMatthew G. Knepley } 161273d901b8SMatthew G. Knepley 1613e729f68cSMatthew G. Knepley /*@C 1614e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1615e729f68cSMatthew G. Knepley 1616d083f849SBarry Smith Collective on dm 1617c0f8e1fdSMatthew G. Knepley 1618e729f68cSMatthew G. Knepley Input Parameters: 1619a1cb98faSBarry Smith + dm - The `DM` 16200163fd50SMatthew G. Knepley . time - The time 1621ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1622e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1623e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1624e729f68cSMatthew G. Knepley 1625e729f68cSMatthew G. Knepley Output Parameter: 1626e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1627e729f68cSMatthew G. Knepley 1628e729f68cSMatthew G. Knepley Level: developer 1629e729f68cSMatthew G. Knepley 1630a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 1631e729f68cSMatthew G. Knepley @*/ 1632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1633d71ae5a4SJacob Faibussowitsch { 1634e729f68cSMatthew G. Knepley PetscSection section; 1635e729f68cSMatthew G. Knepley PetscQuadrature quad; 1636e729f68cSMatthew G. Knepley Vec localX; 16374bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 1638e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 16394bee2e38SMatthew G. Knepley PetscReal *coords; 1640e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1641485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, c, field, fieldOffset; 1642e729f68cSMatthew G. Knepley 1643e729f68cSMatthew G. Knepley PetscFunctionBegin; 16449566063dSJacob Faibussowitsch PetscCall(VecSet(D, 0.0)); 16459566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 16469566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 16479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 16489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 16499566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 16509566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX)); 16519566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX)); 16529566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX)); 1653e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1654e729f68cSMatthew G. Knepley PetscObject obj; 1655e729f68cSMatthew G. Knepley PetscClassId id; 1656e729f68cSMatthew G. Knepley PetscInt Nc; 1657e729f68cSMatthew G. Knepley 16589566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 1660e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1661e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 1662e729f68cSMatthew G. Knepley 16639566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 16649566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 1665e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1666e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 1667e729f68cSMatthew G. Knepley 16689566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 16699566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 167063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1671e729f68cSMatthew G. Knepley numComponents += Nc; 1672e729f68cSMatthew G. Knepley } 16739566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 167463a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 16759566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numComponents, &funcVal, numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 16769566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 1677e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1678e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 16796f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 16809c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1681e729f68cSMatthew G. Knepley 16829566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 16839566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x)); 1684e729f68cSMatthew G. Knepley 1685e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1686e729f68cSMatthew G. Knepley PetscObject obj; 1687e729f68cSMatthew G. Knepley PetscClassId id; 1688e729f68cSMatthew G. Knepley void *const ctx = ctxs ? ctxs[field] : NULL; 1689e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1690e729f68cSMatthew G. Knepley 16919566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 16929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 16939371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 16949371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 16959371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 16969371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 16979371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 16989371c9d4SSatish Balay Nb = 1; 16999371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 170023f34ed2SToby Isaac if (funcs[field]) { 17017318780aSToby Isaac for (q = 0; q < Nq; ++q) { 17022a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 17032a4e142eSMatthew G. Knepley 17042a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 17052a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 17062a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 17072a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 170863a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], c, q); 17099566063dSJacob Faibussowitsch PetscCall((*funcs[field])(coordDim, time, &coords[q * coordDim], Nc, funcVal, ctx)); 1710c3e24edfSBarry Smith #if defined(needs_fix_with_return_code_argument) 1711e735a8a9SMatthew G. Knepley if (ierr) { 17129566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17139566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17149566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 1715e735a8a9SMatthew G. Knepley } 1716c3e24edfSBarry Smith #endif 17179566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[fieldOffset], &qgeom, q, interpolant)); 17189566063dSJacob Faibussowitsch else if (id == PETSCFV_CLASSID) PetscCall(PetscFVInterpolate_Static((PetscFV)obj, &x[fieldOffset], q, interpolant)); 171963a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 1720e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1721beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q * qNc + (qNc == 1 ? 0 : qc + fc)]; 17224bee2e38SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc])) * wt * fegeom.detJ[q]; 1723e729f68cSMatthew G. Knepley } 1724e729f68cSMatthew G. Knepley } 172523f34ed2SToby Isaac } 1726beaa55a6SMatthew G. Knepley fieldOffset += Nb; 17279c3cf19fSMatthew G. Knepley qc += Nc; 1728e729f68cSMatthew G. Knepley } 17299566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x)); 17309566063dSJacob Faibussowitsch PetscCall(VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES)); 1731e729f68cSMatthew G. Knepley } 17329566063dSJacob Faibussowitsch PetscCall(PetscFree6(funcVal, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 17339566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 17349566063dSJacob Faibussowitsch PetscCall(VecSqrtAbs(D)); 17353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1736e729f68cSMatthew G. Knepley } 1737e729f68cSMatthew G. Knepley 17385f0b18bfSMatthew G. Knepley /*@ 17395f0b18bfSMatthew G. Knepley DMPlexComputeClementInterpolant - This function computes the L2 projection of the cellwise values of a function u onto P1, and stores it in a Vec. 17405f0b18bfSMatthew G. Knepley 17415f0b18bfSMatthew G. Knepley Collective on dm 17425f0b18bfSMatthew G. Knepley 17435f0b18bfSMatthew G. Knepley Input Parameters: 1744a1cb98faSBarry Smith + dm - The `DM` 17455f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 17465f0b18bfSMatthew G. Knepley 17475f0b18bfSMatthew G. Knepley Output Parameter: 1748a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the function 17495f0b18bfSMatthew G. Knepley 17505f0b18bfSMatthew G. Knepley Level: developer 17515f0b18bfSMatthew G. Knepley 1752a1cb98faSBarry Smith Note: 1753a1cb98faSBarry Smith $ u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 1754a1cb98faSBarry Smith 1755a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 17565f0b18bfSMatthew G. Knepley @*/ 1757d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeClementInterpolant(DM dm, Vec locX, Vec locC) 1758d71ae5a4SJacob Faibussowitsch { 17595f0b18bfSMatthew G. Knepley PetscInt debug = ((DM_Plex *)dm->data)->printFEM; 17605f0b18bfSMatthew G. Knepley DM dmc; 17615f0b18bfSMatthew G. Knepley PetscQuadrature quad; 17625f0b18bfSMatthew G. Knepley PetscScalar *interpolant, *valsum; 17635f0b18bfSMatthew G. Knepley PetscFEGeom fegeom; 17645f0b18bfSMatthew G. Knepley PetscReal *coords; 17655f0b18bfSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 17665f0b18bfSMatthew G. Knepley PetscInt dim, cdim, Nf, f, Nc = 0, Nq, qNc, cStart, cEnd, vStart, vEnd, v; 17675f0b18bfSMatthew G. Knepley 17685f0b18bfSMatthew G. Knepley PetscFunctionBegin; 17699566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 17709566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmc)); 17719566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 17729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 17739566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 17745f0b18bfSMatthew G. Knepley fegeom.dimEmbed = cdim; 17759566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 17765f0b18bfSMatthew G. Knepley PetscCheck(Nf > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 17775f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 17785f0b18bfSMatthew G. Knepley PetscObject obj; 17795f0b18bfSMatthew G. Knepley PetscClassId id; 17805f0b18bfSMatthew G. Knepley PetscInt fNc; 17815f0b18bfSMatthew G. Knepley 17829566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 17839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 17845f0b18bfSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 17855f0b18bfSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 17865f0b18bfSMatthew G. Knepley 17879566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 17889566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &fNc)); 17895f0b18bfSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 17905f0b18bfSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 17915f0b18bfSMatthew G. Knepley 17929566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 17939566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &fNc)); 179463a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 17955f0b18bfSMatthew G. Knepley Nc += fNc; 17965f0b18bfSMatthew G. Knepley } 17979566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 179863a3b9bcSJacob Faibussowitsch PetscCheck(qNc == 1, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " > 1", qNc); 17999566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(Nc * 2, &valsum, Nc, &interpolant, cdim * Nq, &coords, Nq, &fegeom.detJ, cdim * cdim * Nq, &fegeom.J, cdim * cdim * Nq, &fegeom.invJ)); 18009566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 18019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 18025f0b18bfSMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 18035f0b18bfSMatthew G. Knepley PetscScalar volsum = 0.0; 18045f0b18bfSMatthew G. Knepley PetscInt *star = NULL; 18055f0b18bfSMatthew G. Knepley PetscInt starSize, st, fc; 18065f0b18bfSMatthew G. Knepley 18079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(valsum, Nc)); 18089566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18095f0b18bfSMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 18105f0b18bfSMatthew G. Knepley const PetscInt cell = star[st]; 18115f0b18bfSMatthew G. Knepley PetscScalar *val = &valsum[Nc]; 18125f0b18bfSMatthew G. Knepley PetscScalar *x = NULL; 18135f0b18bfSMatthew G. Knepley PetscReal vol = 0.0; 18145f0b18bfSMatthew G. Knepley PetscInt foff = 0; 18155f0b18bfSMatthew G. Knepley 18165f0b18bfSMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 18179566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 18189566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 18195f0b18bfSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 18205f0b18bfSMatthew G. Knepley PetscObject obj; 18215f0b18bfSMatthew G. Knepley PetscClassId id; 18225f0b18bfSMatthew G. Knepley PetscInt Nb, fNc, q; 18235f0b18bfSMatthew G. Knepley 18249566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(val, Nc)); 18259566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &obj)); 18269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 18279371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 18289371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &fNc)); 18299371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 18309371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 18319371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &fNc)); 18329371c9d4SSatish Balay Nb = 1; 18339371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18345f0b18bfSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 18355f0b18bfSMatthew G. Knepley const PetscReal wt = quadWeights[q] * fegeom.detJ[q]; 18365f0b18bfSMatthew G. Knepley PetscFEGeom qgeom; 18375f0b18bfSMatthew G. Knepley 18385f0b18bfSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 18395f0b18bfSMatthew G. Knepley qgeom.J = &fegeom.J[q * cdim * cdim]; 18405f0b18bfSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * cdim * cdim]; 18415f0b18bfSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 184263a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 18439566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolate_Static((PetscFE)obj, &x[foff], &qgeom, q, interpolant)); 184463a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 18455f0b18bfSMatthew G. Knepley for (fc = 0; fc < fNc; ++fc) val[foff + fc] += interpolant[fc] * wt; 18465f0b18bfSMatthew G. Knepley vol += wt; 18475f0b18bfSMatthew G. Knepley } 18485f0b18bfSMatthew G. Knepley foff += Nb; 18495f0b18bfSMatthew G. Knepley } 18509566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 18515f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] += val[fc]; 18525f0b18bfSMatthew G. Knepley volsum += vol; 18535f0b18bfSMatthew G. Knepley if (debug) { 18549566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " value: [", v, cell)); 18555f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 18569566063dSJacob Faibussowitsch if (fc) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 18579566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(val[fc]))); 18585f0b18bfSMatthew G. Knepley } 18599566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 18605f0b18bfSMatthew G. Knepley } 18615f0b18bfSMatthew G. Knepley } 18625f0b18bfSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) valsum[fc] /= volsum; 18639566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 18649566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmc, NULL, locC, v, valsum, INSERT_VALUES)); 18655f0b18bfSMatthew G. Knepley } 18669566063dSJacob Faibussowitsch PetscCall(PetscFree6(valsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 18673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18685f0b18bfSMatthew G. Knepley } 18695f0b18bfSMatthew G. Knepley 18705f0b18bfSMatthew G. Knepley /*@ 18711555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 18721555c271SMatthew G. Knepley 1873d083f849SBarry Smith Collective on dm 1874c0f8e1fdSMatthew G. Knepley 18751555c271SMatthew G. Knepley Input Parameters: 1876a1cb98faSBarry Smith + dm - The `DM` 18775f0b18bfSMatthew G. Knepley - locX - The coefficient vector u_h 18781555c271SMatthew G. Knepley 18791555c271SMatthew G. Knepley Output Parameter: 1880a1cb98faSBarry Smith . locC - A `Vec` which holds the Clement interpolant of the gradient 18811555c271SMatthew G. Knepley 18821555c271SMatthew G. Knepley Level: developer 18831555c271SMatthew G. Knepley 1884a1cb98faSBarry Smith Note: 1885a1cb98faSBarry Smith $\nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| $ where $ |T_i| $ is the cell volume 1886a1cb98faSBarry Smith 1887a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMPlexComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 18881555c271SMatthew G. Knepley @*/ 1889d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 1890d71ae5a4SJacob Faibussowitsch { 1891db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 1892db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 18931555c271SMatthew G. Knepley DM dmC; 18941555c271SMatthew G. Knepley PetscQuadrature quad; 18951555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 18964bee2e38SMatthew G. Knepley PetscFEGeom fegeom; 18974bee2e38SMatthew G. Knepley PetscReal *coords; 18981555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1899485ad865SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 19001555c271SMatthew G. Knepley 19011555c271SMatthew G. Knepley PetscFunctionBegin; 19029566063dSJacob Faibussowitsch PetscCall(PetscCitationsRegister(ClementCitation, &Clementcite)); 19039566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 19049566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 19059566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19069566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 19074bee2e38SMatthew G. Knepley fegeom.dimEmbed = coordDim; 19089566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &numFields)); 19095f80ce2aSJacob Faibussowitsch PetscCheck(numFields, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fields is zero!"); 19101555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 19111555c271SMatthew G. Knepley PetscObject obj; 19121555c271SMatthew G. Knepley PetscClassId id; 19131555c271SMatthew G. Knepley PetscInt Nc; 19141555c271SMatthew G. Knepley 19159566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19169566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19171555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 19181555c271SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 19191555c271SMatthew G. Knepley 19209566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 19219566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 19221555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 19231555c271SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 19241555c271SMatthew G. Knepley 19259566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 19269566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 192763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19281555c271SMatthew G. Knepley numComponents += Nc; 19291555c271SMatthew G. Knepley } 19309566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 193163a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 19329566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 19339566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 19349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 19351555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 19361555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 19371555c271SMatthew G. Knepley PetscInt *star = NULL; 19381555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 19391555c271SMatthew G. Knepley 19409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 19419566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 19421555c271SMatthew G. Knepley for (st = 0; st < starSize * 2; st += 2) { 19431555c271SMatthew G. Knepley const PetscInt cell = star[st]; 19441555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim * numComponents]; 19451555c271SMatthew G. Knepley PetscScalar *x = NULL; 19461555c271SMatthew G. Knepley PetscReal vol = 0.0; 19471555c271SMatthew G. Knepley 19481555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 19499566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 19509566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 19511555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 19521555c271SMatthew G. Knepley PetscObject obj; 19531555c271SMatthew G. Knepley PetscClassId id; 19541555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 19551555c271SMatthew G. Knepley 19569566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 19579566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 19589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 19599371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 19609371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 19619371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 19629371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 19639371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 19649371c9d4SSatish Balay Nb = 1; 19659371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19661555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 19672a4e142eSMatthew G. Knepley PetscFEGeom qgeom; 19682a4e142eSMatthew G. Knepley 19692a4e142eSMatthew G. Knepley qgeom.dimEmbed = fegeom.dimEmbed; 19702a4e142eSMatthew G. Knepley qgeom.J = &fegeom.J[q * coordDim * coordDim]; 19712a4e142eSMatthew G. Knepley qgeom.invJ = &fegeom.invJ[q * coordDim * coordDim]; 19722a4e142eSMatthew G. Knepley qgeom.detJ = &fegeom.detJ[q]; 197363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 19749566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &qgeom, q, interpolant)); 197563a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 19761555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 197753d2db2dSJoe Wallwork const PetscReal wt = quadWeights[q * qNc + qc]; 19781555c271SMatthew G. Knepley 19794bee2e38SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 19801555c271SMatthew G. Knepley } 19814bee2e38SMatthew G. Knepley vol += quadWeights[q * qNc] * fegeom.detJ[q]; 19821555c271SMatthew G. Knepley } 19831555c271SMatthew G. Knepley fieldOffset += Nb; 19841555c271SMatthew G. Knepley qc += Nc; 19851555c271SMatthew G. Knepley } 19869566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 1987f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1988ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 1989f8527842SMatthew G. Knepley } 1990f8527842SMatthew G. Knepley volsum += vol; 1991db1066baSMatthew G. Knepley if (debug) { 19929566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Vertex %" PetscInt_FMT " Cell %" PetscInt_FMT " gradient: [", v, cell)); 19931555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 19941555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 19959566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 19969566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 19971555c271SMatthew G. Knepley } 19981555c271SMatthew G. Knepley } 19999566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 2000db1066baSMatthew G. Knepley } 20011555c271SMatthew G. Knepley } 20021555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 20031555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] /= volsum; 20041555c271SMatthew G. Knepley } 20059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 20069566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 20071555c271SMatthew G. Knepley } 20089566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 20093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20101555c271SMatthew G. Knepley } 20111555c271SMatthew G. Knepley 2012d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 2013d71ae5a4SJacob Faibussowitsch { 2014338f77d5SMatthew G. Knepley DM dmAux = NULL; 201561aaff12SToby Isaac PetscDS prob, probAux = NULL; 201673d901b8SMatthew G. Knepley PetscSection section, sectionAux; 2017338f77d5SMatthew G. Knepley Vec locX, locA; 2018c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 2019c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 2020338f77d5SMatthew G. Knepley /* DS */ 2021338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 2022338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 2023338f77d5SMatthew G. Knepley PetscScalar *u, *a; 2024338f77d5SMatthew G. Knepley const PetscScalar *constants; 2025338f77d5SMatthew G. Knepley /* Geometry */ 2026c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 2027338f77d5SMatthew G. Knepley DM dmGrad; 2028c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 2029338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 2030b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 2031338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 2032b7260050SToby Isaac PetscInt maxDegree; 2033c330f8ffSToby Isaac DMField coordField; 2034c330f8ffSToby Isaac IS cellIS; 203573d901b8SMatthew G. Knepley 203673d901b8SMatthew G. Knepley PetscFunctionBegin; 20379566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 20389566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20409566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 2041338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 2042b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2043b5a3613cSMatthew G. Knepley PetscObject obj; 2044b5a3613cSMatthew G. Knepley PetscClassId id; 2045b5a3613cSMatthew G. Knepley 20469566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2048338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 2049338f77d5SMatthew G. Knepley } 2050338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 20519566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 20529566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 20539566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 20549566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 2055338f77d5SMatthew G. Knepley /* Read DS information */ 20569566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 20579566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 20589566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 20599566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, numCells, cStart, 1, &cellIS)); 20609566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 2061338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 20629566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 20639a2a23afSMatthew G. Knepley if (locA) { 20649566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 20659566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 20669566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 20679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 20689566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 20699566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 2070338f77d5SMatthew G. Knepley } 2071338f77d5SMatthew G. Knepley /* Allocate data arrays */ 20729566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numCells * totDim, &u)); 20739566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 2074338f77d5SMatthew G. Knepley /* Read out geometry */ 20759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 20769566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 2077b7260050SToby Isaac if (maxDegree <= 1) { 20789566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 207948a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &cgeomFEM)); 2080b5a3613cSMatthew G. Knepley } 2081b5a3613cSMatthew G. Knepley if (useFVM) { 2082338f77d5SMatthew G. Knepley PetscFV fv = NULL; 2083b5a3613cSMatthew G. Knepley Vec grad; 2084b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 2085b5a3613cSMatthew G. Knepley PetscBool compGrad; 2086b5a3613cSMatthew G. Knepley 2087338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2088338f77d5SMatthew G. Knepley PetscObject obj; 2089338f77d5SMatthew G. Knepley PetscClassId id; 2090338f77d5SMatthew G. Knepley 20919566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 20929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 20939371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 20949371c9d4SSatish Balay fv = (PetscFV)obj; 20959371c9d4SSatish Balay break; 20969371c9d4SSatish Balay } 2097338f77d5SMatthew G. Knepley } 20989566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &compGrad)); 20999566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, PETSC_TRUE)); 21009566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM)); 21019566063dSJacob Faibussowitsch PetscCall(DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad)); 21029566063dSJacob Faibussowitsch PetscCall(PetscFVSetComputeGradients(fv, compGrad)); 21039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 2104b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 21059566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 21069566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 21079566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 2108b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 21099566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 21109566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 21119566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 21129566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 2113b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 21149566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad)); 21159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 2116b5a3613cSMatthew G. Knepley } 2117338f77d5SMatthew G. Knepley /* Read out data from inputs */ 211873d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 211973d901b8SMatthew G. Knepley PetscScalar *x = NULL; 212073d901b8SMatthew G. Knepley PetscInt i; 212173d901b8SMatthew G. Knepley 21229566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, c, NULL, &x)); 21230f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 21249566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x)); 212573d901b8SMatthew G. Knepley if (dmAux) { 21269566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x)); 21270f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 21289566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x)); 212973d901b8SMatthew G. Knepley } 213073d901b8SMatthew G. Knepley } 2131338f77d5SMatthew G. Knepley /* Do integration for each field */ 213273d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 2133c1f031eeSMatthew G. Knepley PetscObject obj; 2134c1f031eeSMatthew G. Knepley PetscClassId id; 2135c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 213673d901b8SMatthew G. Knepley 21379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 21389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 2139c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2140c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2141c1f031eeSMatthew G. Knepley PetscQuadrature q; 2142c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 2143c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 2144c1f031eeSMatthew G. Knepley 21459566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 21469566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 21479566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 21489566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 2149c1f031eeSMatthew G. Knepley blockSize = Nb * Nq; 215073d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 21519566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 215273d901b8SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 215373d901b8SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 215473d901b8SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 215573d901b8SMatthew G. Knepley offset = numCells - Nr; 215648a46eb9SPierre Jolivet if (!affineQuad) PetscCall(DMFieldCreateFEGeom(coordField, cellIS, q, PETSC_FALSE, &cgeomFEM)); 21579566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 21589566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Ne, chunkGeom, u, probAux, a, cintegral)); 21599566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &chunkGeom)); 21609566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrate(prob, f, Nr, chunkGeom, &u[offset * totDim], probAux, &a[offset * totDimAux], &cintegral[offset * Nf])); 21619566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &chunkGeom)); 216248a46eb9SPierre Jolivet if (!affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 2163c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 2164c1f031eeSMatthew G. Knepley PetscInt foff; 2165420e96edSMatthew G. Knepley PetscPointFunc obj_func; 2166b69edc29SMatthew G. Knepley PetscScalar lint; 2167c1f031eeSMatthew G. Knepley 21689566063dSJacob Faibussowitsch PetscCall(PetscDSGetObjective(prob, f, &obj_func)); 21699566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, f, &foff)); 2170c1f031eeSMatthew G. Knepley if (obj_func) { 2171c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 2172b5a3613cSMatthew G. Knepley PetscScalar *u_x; 2173b5a3613cSMatthew G. Knepley 21749566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x)); 2175338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim * c + foff], NULL, u_x, aOff, NULL, &a[totDimAux * c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 2176338f77d5SMatthew G. Knepley cintegral[c * Nf + f] += PetscRealPart(lint) * cgeomFVM[c].volume; 217773d901b8SMatthew G. Knepley } 2178c1f031eeSMatthew G. Knepley } 217963a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 2180c1f031eeSMatthew G. Knepley } 2181338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 2182b5a3613cSMatthew G. Knepley if (useFVM) { 21839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 21849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 21859566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 21869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&faceGeometryFVM)); 21879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cellGeometryFVM)); 21889566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmGrad)); 2189b5a3613cSMatthew G. Knepley } 21909566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscFree(a)); 21919566063dSJacob Faibussowitsch PetscCall(PetscFree(u)); 2192338f77d5SMatthew G. Knepley /* Cleanup */ 219348a46eb9SPierre Jolivet if (affineQuad) PetscCall(PetscFEGeomDestroy(&cgeomFEM)); 21949566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 21959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 21969566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198338f77d5SMatthew G. Knepley } 2199338f77d5SMatthew G. Knepley 2200338f77d5SMatthew G. Knepley /*@ 2201338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 2202338f77d5SMatthew G. Knepley 2203338f77d5SMatthew G. Knepley Input Parameters: 2204338f77d5SMatthew G. Knepley + dm - The mesh 2205338f77d5SMatthew G. Knepley . X - Global input vector 2206338f77d5SMatthew G. Knepley - user - The user context 2207338f77d5SMatthew G. Knepley 2208338f77d5SMatthew G. Knepley Output Parameter: 2209338f77d5SMatthew G. Knepley . integral - Integral for each field 2210338f77d5SMatthew G. Knepley 2211338f77d5SMatthew G. Knepley Level: developer 2212338f77d5SMatthew G. Knepley 2213a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2214338f77d5SMatthew G. Knepley @*/ 2215d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 2216d71ae5a4SJacob Faibussowitsch { 2217338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2218b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 2219412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2220338f77d5SMatthew G. Knepley 2221338f77d5SMatthew G. Knepley PetscFunctionBegin; 2222338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2223338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2224dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 3); 22259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22269566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22279566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2229338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22309566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &lintegral, (cEnd - cStart) * Nf, &cintegral)); 22319566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2232338f77d5SMatthew G. Knepley /* Sum up values */ 2233338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2234338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2235338f77d5SMatthew G. Knepley 22369566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 2237b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c * Nf + f]; 2238338f77d5SMatthew G. Knepley } 22391c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject)dm))); 224073d901b8SMatthew G. Knepley if (mesh->printFEM) { 22419566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "Integral:")); 22429566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), " %g", (double)PetscRealPart(integral[f]))); 22439566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "\n")); 224473d901b8SMatthew G. Knepley } 22459566063dSJacob Faibussowitsch PetscCall(PetscFree2(lintegral, cintegral)); 22469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2248338f77d5SMatthew G. Knepley } 2249338f77d5SMatthew G. Knepley 2250338f77d5SMatthew G. Knepley /*@ 2251338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 2252338f77d5SMatthew G. Knepley 2253338f77d5SMatthew G. Knepley Input Parameters: 2254338f77d5SMatthew G. Knepley + dm - The mesh 2255338f77d5SMatthew G. Knepley . X - Global input vector 2256338f77d5SMatthew G. Knepley - user - The user context 2257338f77d5SMatthew G. Knepley 2258338f77d5SMatthew G. Knepley Output Parameter: 2259338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 2260338f77d5SMatthew G. Knepley 2261338f77d5SMatthew G. Knepley Level: developer 2262338f77d5SMatthew G. Knepley 2263a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexSNESComputeResidualFEM()` 2264338f77d5SMatthew G. Knepley @*/ 2265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 2266d71ae5a4SJacob Faibussowitsch { 2267338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 2268338f77d5SMatthew G. Knepley DM dmF; 2269338f77d5SMatthew G. Knepley PetscSection sectionF; 2270338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 2271412e9a14SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cell; 2272338f77d5SMatthew G. Knepley 2273338f77d5SMatthew G. Knepley PetscFunctionBegin; 2274338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2275338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 2276338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 22779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 22789566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 22799566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &cellHeight)); 22809566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, cellHeight, &cStart, &cEnd)); 2281338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 22829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1((cEnd - cStart) * Nf, &cintegral)); 22839566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user)); 2284338f77d5SMatthew G. Knepley /* Put values in F*/ 22859566063dSJacob Faibussowitsch PetscCall(VecGetDM(F, &dmF)); 22869566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmF, §ionF)); 22879566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &af)); 2288338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2289338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 2290338f77d5SMatthew G. Knepley PetscInt dof, off; 2291338f77d5SMatthew G. Knepley 22929566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c * Nf])); 22939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionF, cell, &dof)); 22949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionF, cell, &off)); 229563a3b9bcSJacob Faibussowitsch PetscCheck(dof == Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %" PetscInt_FMT " != %" PetscInt_FMT, dof, Nf); 2296338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off + f] = cintegral[c * Nf + f]; 2297338f77d5SMatthew G. Knepley } 22989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &af)); 22999566063dSJacob Faibussowitsch PetscCall(PetscFree(cintegral)); 23009566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 23013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 230273d901b8SMatthew G. Knepley } 230373d901b8SMatthew G. Knepley 2304d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *fintegral, void *user) 2305d71ae5a4SJacob Faibussowitsch { 23069b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 2307a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 23089b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 23099b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 23109b6f715bSMatthew G. Knepley Vec locA = NULL; 23119b6f715bSMatthew G. Knepley DMField coordField; 23129b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 23139b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 23149b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 231564c72086SMatthew G. Knepley const PetscScalar *constants; 23169b6f715bSMatthew G. Knepley PetscInt numConstants, f; 231764c72086SMatthew G. Knepley 231864c72086SMatthew G. Knepley PetscFunctionBegin; 23199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 23209566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 23219566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 23229566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 23239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 232464c72086SMatthew G. Knepley /* Determine which discretizations we have */ 23259b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 232664c72086SMatthew G. Knepley PetscObject obj; 232764c72086SMatthew G. Knepley PetscClassId id; 232864c72086SMatthew G. Knepley 23299566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 23309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 233163a3b9bcSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Not supported for FVM (field %" PetscInt_FMT ")", f); 233264c72086SMatthew G. Knepley } 233364c72086SMatthew G. Knepley /* Read DS information */ 23349566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 23359566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(prob, &uOff)); 23369566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentDerivativeOffsets(prob, &uOff_x)); 23379566063dSJacob Faibussowitsch PetscCall(PetscDSGetConstants(prob, &numConstants, &constants)); 233864c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 23399566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 23409b6f715bSMatthew G. Knepley if (locA) { 23419b6f715bSMatthew G. Knepley DM dmAux; 23429b6f715bSMatthew G. Knepley 23439566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 23449566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 23459566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 23469566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 23479566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(probAux, &NfAux)); 23489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 23499566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 23509566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffsets(probAux, &aOff)); 235164c72086SMatthew G. Knepley } 23529b6f715bSMatthew G. Knepley /* Integrate over points */ 23539b6f715bSMatthew G. Knepley { 23549b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 2355b7260050SToby Isaac PetscInt maxDegree; 23569b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 23579b6f715bSMatthew G. Knepley const PetscInt *points; 23589b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 23599b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 236064c72086SMatthew G. Knepley 23619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 23629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 23639566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numFaces * totDim, &u, locA ? numFaces * totDimAux : 0, &a)); 23649566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 236564c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 236664c72086SMatthew G. Knepley PetscFE fe; 236764c72086SMatthew G. Knepley 23689566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fe)); 23699566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 23709b6f715bSMatthew G. Knepley if (!qGeom) { 23719566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 23729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 23739b6f715bSMatthew G. Knepley } 23749566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 23759566063dSJacob Faibussowitsch PetscCall(DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 23769b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 2377f15274beSMatthew Knepley const PetscInt point = points[face], *support; 23789b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 2379f15274beSMatthew Knepley PetscInt i; 23809b6f715bSMatthew G. Knepley 23819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 23829566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 23839b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 23849566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 23859b6f715bSMatthew G. Knepley if (locA) { 23869b6f715bSMatthew G. Knepley PetscInt subp; 23879566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 23889566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23899b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f * totDimAux + i] = x[i]; 23909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 23919b6f715bSMatthew G. Knepley } 23929b6f715bSMatthew G. Knepley } 23939b6f715bSMatthew G. Knepley /* Get blocking */ 23949b6f715bSMatthew G. Knepley { 23959b6f715bSMatthew G. Knepley PetscQuadrature q; 23969b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 23979b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 23989b6f715bSMatthew G. Knepley 23999566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 24009566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 24019566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL)); 24029566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 240364c72086SMatthew G. Knepley blockSize = Nb * Nq; 240464c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 24059b6f715bSMatthew G. Knepley chunkSize = numBatches * batchSize; 24069566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 24079b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 24089b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 240964c72086SMatthew G. Knepley offset = numFaces - Nr; 241064c72086SMatthew G. Knepley } 24119b6f715bSMatthew G. Knepley /* Do integration for each field */ 24129b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 24139566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, chunk * chunkSize, (chunk + 1) * chunkSize, &chunkGeom)); 24149566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral)); 24159566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 241664c72086SMatthew G. Knepley } 24179566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 24189566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBd(prob, field, func, Nr, chunkGeom, &u[offset * totDim], probAux, a ? &a[offset * totDimAux] : NULL, &fintegral[offset * Nf])); 24199566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 242064c72086SMatthew G. Knepley /* Cleanup data arrays */ 24219566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 24229566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 24239566063dSJacob Faibussowitsch PetscCall(PetscFree2(u, a)); 24249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 242564c72086SMatthew G. Knepley } 242664c72086SMatthew G. Knepley } 24279566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 24289566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 24293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24309b6f715bSMatthew G. Knepley } 24319b6f715bSMatthew G. Knepley 24329b6f715bSMatthew G. Knepley /*@ 24339b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 24349b6f715bSMatthew G. Knepley 24359b6f715bSMatthew G. Knepley Input Parameters: 24369b6f715bSMatthew G. Knepley + dm - The mesh 24379b6f715bSMatthew G. Knepley . X - Global input vector 2438a1cb98faSBarry Smith . label - The boundary `DMLabel` 2439a1cb98faSBarry Smith . numVals - The number of label values to use, or `PETSC_DETERMINE` for all values 2440a1cb98faSBarry Smith . vals - The label values to use, or NULL for all values 244167b8a455SSatish Balay . func - The function to integrate along the boundary 24429b6f715bSMatthew G. Knepley - user - The user context 24439b6f715bSMatthew G. Knepley 24449b6f715bSMatthew G. Knepley Output Parameter: 24459b6f715bSMatthew G. Knepley . integral - Integral for each field 24469b6f715bSMatthew G. Knepley 24479b6f715bSMatthew G. Knepley Level: developer 24489b6f715bSMatthew G. Knepley 2449a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeIntegralFEM()`, `DMPlexComputeBdResidualFEM()` 24509b6f715bSMatthew G. Knepley @*/ 2451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], void (*func)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), PetscScalar *integral, void *user) 2452d71ae5a4SJacob Faibussowitsch { 24539b6f715bSMatthew G. Knepley Vec locX; 24549b6f715bSMatthew G. Knepley PetscSection section; 24559b6f715bSMatthew G. Knepley DMLabel depthLabel; 24569b6f715bSMatthew G. Knepley IS facetIS; 24579b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 24589b6f715bSMatthew G. Knepley 24599b6f715bSMatthew G. Knepley PetscFunctionBegin; 24609b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24619b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 24629b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 2463dadcf809SJacob Faibussowitsch if (vals) PetscValidIntPointer(vals, 5); 2464dadcf809SJacob Faibussowitsch PetscValidScalarPointer(integral, 7); 24659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 24669566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 24679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24689566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 24699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 24709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &Nf)); 24719b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 24729566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &locX)); 24739566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL)); 24749566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX)); 24759566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX)); 24769b6f715bSMatthew G. Knepley /* Loop over label values */ 24779566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(integral, Nf)); 24789b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 24799b6f715bSMatthew G. Knepley IS pointIS; 24809b6f715bSMatthew G. Knepley PetscInt numFaces, face; 24819b6f715bSMatthew G. Knepley PetscScalar *fintegral; 24829b6f715bSMatthew G. Knepley 24839566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, vals[v], &pointIS)); 24849b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 24859b6f715bSMatthew G. Knepley { 24869b6f715bSMatthew G. Knepley IS isectIS; 24879b6f715bSMatthew G. Knepley 24889b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 24899566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 24909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 24919b6f715bSMatthew G. Knepley pointIS = isectIS; 24929b6f715bSMatthew G. Knepley } 24939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 24949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numFaces * Nf, &fintegral)); 24959566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user)); 24969b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 24979371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 24989371c9d4SSatish Balay for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face * Nf + f]; 24999566063dSJacob Faibussowitsch PetscCall(PetscFree(fintegral)); 25009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 25019b6f715bSMatthew G. Knepley } 25029566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &locX)); 25039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 25049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_IntegralFEM, dm, 0, 0, 0)); 25053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 250664c72086SMatthew G. Knepley } 250764c72086SMatthew G. Knepley 2508d69c5d34SMatthew G. Knepley /*@ 2509a1cb98faSBarry Smith DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse `DM` to a uniformly refined `DM`. 2510d69c5d34SMatthew G. Knepley 2511d69c5d34SMatthew G. Knepley Input Parameters: 2512cf51de39SMatthew G. Knepley + dmc - The coarse mesh 2513cf51de39SMatthew G. Knepley . dmf - The fine mesh 2514cf51de39SMatthew G. Knepley . isRefined - Flag indicating regular refinement, rather than the same topology 2515d69c5d34SMatthew G. Knepley - user - The user context 2516d69c5d34SMatthew G. Knepley 2517d69c5d34SMatthew G. Knepley Output Parameter: 2518934789fcSMatthew G. Knepley . In - The interpolation matrix 2519d69c5d34SMatthew G. Knepley 2520d69c5d34SMatthew G. Knepley Level: developer 2521d69c5d34SMatthew G. Knepley 2522a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2523d69c5d34SMatthew G. Knepley @*/ 2524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, PetscBool isRefined, Mat In, void *user) 2525d71ae5a4SJacob Faibussowitsch { 2526d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmc->data; 2527d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 2528d69c5d34SMatthew G. Knepley PetscFE *feRef; 252997c42addSMatthew G. Knepley PetscFV *fvRef; 2530d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2531d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2532d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 2533485ad865SMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, c; 25342ea9c922SToby Isaac PetscInt cTotDim = 0, rTotDim = 0; 2535d69c5d34SMatthew G. Knepley 2536d69c5d34SMatthew G. Knepley PetscFunctionBegin; 25379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 25389566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 25399566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 25409566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 25419566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 25429566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 25439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 25449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 25459566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &feRef, Nf, &fvRef)); 2546d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 25472ea9c922SToby Isaac PetscObject obj, objc; 25482ea9c922SToby Isaac PetscClassId id, idc; 25492ea9c922SToby Isaac PetscInt rNb = 0, Nc = 0, cNb = 0; 2550d69c5d34SMatthew G. Knepley 25519566063dSJacob Faibussowitsch PetscCall(DMGetField(dmf, f, NULL, &obj)); 25529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 255397c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 255497c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 255597c42addSMatthew G. Knepley 2556cf51de39SMatthew G. Knepley if (isRefined) { 25579566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 2558cf51de39SMatthew G. Knepley } else { 25599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fe)); 2560cf51de39SMatthew G. Knepley feRef[f] = fe; 2561cf51de39SMatthew G. Knepley } 25629566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &rNb)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 256497c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 256597c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 256697c42addSMatthew G. Knepley PetscDualSpace Q; 256797c42addSMatthew G. Knepley 2568cf51de39SMatthew G. Knepley if (isRefined) { 25699566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 2570cf51de39SMatthew G. Knepley } else { 25719566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fv)); 2572cf51de39SMatthew G. Knepley fvRef[f] = fv; 2573cf51de39SMatthew G. Knepley } 25749566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 25759566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &rNb)); 25769566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25779566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 257897c42addSMatthew G. Knepley } 25799566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, f, NULL, &objc)); 25809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(objc, &idc)); 25812ea9c922SToby Isaac if (idc == PETSCFE_CLASSID) { 25822ea9c922SToby Isaac PetscFE fe = (PetscFE)objc; 25832ea9c922SToby Isaac 25849566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cNb)); 25852ea9c922SToby Isaac } else if (id == PETSCFV_CLASSID) { 25862ea9c922SToby Isaac PetscFV fv = (PetscFV)obj; 25872ea9c922SToby Isaac PetscDualSpace Q; 25882ea9c922SToby Isaac 25899566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 25909566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &cNb)); 2591d69c5d34SMatthew G. Knepley } 25922ea9c922SToby Isaac rTotDim += rNb; 25932ea9c922SToby Isaac cTotDim += cNb; 25942ea9c922SToby Isaac } 25959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rTotDim * cTotDim, &elemMat)); 25969566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, rTotDim * cTotDim)); 2597d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2598d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2599d69c5d34SMatthew G. Knepley PetscQuadrature f; 2600d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2601d69c5d34SMatthew G. Knepley PetscReal *points; 2602d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2603d69c5d34SMatthew G. Knepley 2604d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 260597c42addSMatthew G. Knepley if (feRef[fieldI]) { 26069566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[fieldI], &Qref)); 26079566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[fieldI], &Nc)); 260897c42addSMatthew G. Knepley } else { 26099566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[fieldI], &Qref)); 26109566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[fieldI], &Nc)); 261197c42addSMatthew G. Knepley } 26129566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Qref, &fpdim)); 2613d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 26149566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26159566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL)); 2616d69c5d34SMatthew G. Knepley npoints += Np; 2617d69c5d34SMatthew G. Knepley } 26189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(npoints * dim, &points)); 2619d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26209566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26219566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL)); 26229371c9d4SSatish Balay for (p = 0; p < Np; ++p, ++k) 26239371c9d4SSatish Balay for (d = 0; d < dim; ++d) points[k * dim + d] = qpoints[p * dim + d]; 2624d69c5d34SMatthew G. Knepley } 2625d69c5d34SMatthew G. Knepley 2626d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 262797c42addSMatthew G. Knepley PetscObject obj; 262897c42addSMatthew G. Knepley PetscClassId id; 26299c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2630d69c5d34SMatthew G. Knepley 26319566063dSJacob Faibussowitsch PetscCall(DMGetField(dmc, fieldJ, NULL, &obj)); 26329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 263397c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 263497c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 2635ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 2636d69c5d34SMatthew G. Knepley 2637d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 26389566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &NcJ)); 26399566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 2640ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2641ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 264263a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 26439566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation(fe, 1, npoints, points, 0, &T)); 2644d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26459566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26469566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 264763a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 2648d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 264936a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2650d172c84bSMatthew G. Knepley /* 2651d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2652d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2653d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2654d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2655d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2656d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2657d172c84bSMatthew G. Knepley */ 2658ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += T->T[0][k * cpdim * NcJ + j * Nc + c] * qweights[p * qNc + c]; 265936a6d9c0SMatthew G. Knepley } 2660d69c5d34SMatthew G. Knepley } 2661d69c5d34SMatthew G. Knepley } 26629566063dSJacob Faibussowitsch PetscCall(PetscTabulationDestroy(&T)); 2663ffe73a53SMatthew G. Knepley } 266497c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 266597c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 266697c42addSMatthew G. Knepley 266797c42addSMatthew G. Knepley /* Evaluate constant function at points */ 26689566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcJ)); 266997c42addSMatthew G. Knepley cpdim = 1; 267097c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 267197c42addSMatthew G. Knepley if (fieldI == fieldJ) { 267263a3b9bcSJacob Faibussowitsch PetscCheck(Nc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, Nc, NcJ); 267397c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 26749566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Qref, i, &f)); 26759566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights)); 267663a3b9bcSJacob Faibussowitsch PetscCheck(qNc == NcJ, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, NcJ); 267797c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 267897c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2679458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i) * cTotDim + offsetJ + j] += 1.0 * qweights[p * qNc + c]; 268097c42addSMatthew G. Knepley } 268197c42addSMatthew G. Knepley } 268297c42addSMatthew G. Knepley } 268397c42addSMatthew G. Knepley } 268497c42addSMatthew G. Knepley } 2685d172c84bSMatthew G. Knepley offsetJ += cpdim; 2686d69c5d34SMatthew G. Knepley } 2687d172c84bSMatthew G. Knepley offsetI += fpdim; 26889566063dSJacob Faibussowitsch PetscCall(PetscFree(points)); 2689d69c5d34SMatthew G. Knepley } 26909566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat)); 26917f5b169aSMatthew G. Knepley /* Preallocate matrix */ 26927f5b169aSMatthew G. Knepley { 2693c094ef40SMatthew G. Knepley Mat preallocator; 2694c094ef40SMatthew G. Knepley PetscScalar *vals; 2695c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2696c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 26977f5b169aSMatthew G. Knepley 26989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 26999566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &preallocator)); 27009566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 27019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 27029566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 27039566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(rTotDim * cTotDim, &vals, cTotDim, &cellCIndices, rTotDim, &cellFIndices)); 27047f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2705cf51de39SMatthew G. Knepley if (isRefined) { 27069566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices)); 27079566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES)); 2708cf51de39SMatthew G. Knepley } else { 27099566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, preallocator, cell, vals, INSERT_VALUES)); 2710cf51de39SMatthew G. Knepley } 27117f5b169aSMatthew G. Knepley } 27129566063dSJacob Faibussowitsch PetscCall(PetscFree3(vals, cellCIndices, cellFIndices)); 27139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 27149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 27159566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In)); 27169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 27177f5b169aSMatthew G. Knepley } 27187f5b169aSMatthew G. Knepley /* Fill matrix */ 27199566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(In)); 2720d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2721cf51de39SMatthew G. Knepley if (isRefined) { 27229566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2723cf51de39SMatthew G. Knepley } else { 27249566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosureGeneral(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES)); 2725cf51de39SMatthew G. Knepley } 2726d69c5d34SMatthew G. Knepley } 27279566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscFEDestroy(&feRef[f])); 27289566063dSJacob Faibussowitsch PetscCall(PetscFree2(feRef, fvRef)); 27299566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 27309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 27319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 27329318fe57SMatthew G. Knepley if (mesh->printFEM > 1) { 27339566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name)); 27349566063dSJacob Faibussowitsch PetscCall(MatChop(In, 1.0e-10)); 27359566063dSJacob Faibussowitsch PetscCall(MatView(In, NULL)); 2736d69c5d34SMatthew G. Knepley } 27379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2739d69c5d34SMatthew G. Knepley } 27406c73c22cSMatthew G. Knepley 2741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2742d71ae5a4SJacob Faibussowitsch { 2743bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_SUP, "Laziness"); 2744bd041c0cSMatthew G. Knepley } 2745bd041c0cSMatthew G. Knepley 274668132eb9SMatthew G. Knepley /*@ 2747a1cb98faSBarry Smith DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse `DM` to a non-nested fine `DM`. 274868132eb9SMatthew G. Knepley 274968132eb9SMatthew G. Knepley Input Parameters: 275068132eb9SMatthew G. Knepley + dmf - The fine mesh 275168132eb9SMatthew G. Knepley . dmc - The coarse mesh 275268132eb9SMatthew G. Knepley - user - The user context 275368132eb9SMatthew G. Knepley 275468132eb9SMatthew G. Knepley Output Parameter: 275568132eb9SMatthew G. Knepley . In - The interpolation matrix 275668132eb9SMatthew G. Knepley 275768132eb9SMatthew G. Knepley Level: developer 275868132eb9SMatthew G. Knepley 2759a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 276068132eb9SMatthew G. Knepley @*/ 2761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 2762d71ae5a4SJacob Faibussowitsch { 276364e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 276464e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 27654ef9d792SMatthew G. Knepley PetscDS prob; 2766a0806964SMatthew G. Knepley Mat interp; 2767a0806964SMatthew G. Knepley PetscSection fsection, globalFSection; 2768a0806964SMatthew G. Knepley PetscSection csection, globalCSection; 2769a0806964SMatthew G. Knepley PetscInt locRows, locCols; 27704ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 27714ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 27724ef9d792SMatthew G. Knepley PetscScalar *elemMat; 2773a0806964SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell, s; 27744ef9d792SMatthew G. Knepley 27754ef9d792SMatthew G. Knepley PetscFunctionBegin; 27769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 27779566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 27789566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 27799566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 27809566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 27819566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 27829566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 27839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 27849566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 27859566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 27869566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 2787a0806964SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dmf, 0, &cStart, &cEnd)); 27889566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 27899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 27904ef9d792SMatthew G. Knepley 2791a0806964SMatthew G. Knepley PetscCall(MatGetLocalSize(In, &locRows, &locCols)); 2792a0806964SMatthew G. Knepley PetscCall(MatCreate(PetscObjectComm((PetscObject)In), &interp)); 2793a0806964SMatthew G. Knepley PetscCall(MatSetType(interp, MATPREALLOCATOR)); 2794a0806964SMatthew G. Knepley PetscCall(MatSetSizes(interp, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE)); 2795a0806964SMatthew G. Knepley PetscCall(MatSetUp(interp)); 2796a0806964SMatthew G. Knepley for (s = 0; s < 2; ++s) { 27974ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 27984ef9d792SMatthew G. Knepley PetscObject obj; 27994ef9d792SMatthew G. Knepley PetscClassId id; 2800c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 2801ef0bb6c7SMatthew G. Knepley PetscTabulation T = NULL; 28024ef9d792SMatthew G. Knepley PetscQuadrature f; 28034ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2804d0f6233fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, off, i, d; 28054ef9d792SMatthew G. Knepley 2806d0f6233fSMatthew G. Knepley PetscCall(PetscDSGetFieldOffset(prob, field, &off)); 28079566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 28089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 28094ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28104ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 28114ef9d792SMatthew G. Knepley 28129566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &Q)); 28139566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 2814a0806964SMatthew G. Knepley if (s) PetscCall(PetscFECreateTabulation(fe, 1, 1, x, 0, &T)); 28154ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 28164ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 28174ef9d792SMatthew G. Knepley 28189566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fv, &Q)); 28194ef9d792SMatthew G. Knepley Nc = 1; 282063a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dmc), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 28219566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fpdim)); 28224ef9d792SMatthew G. Knepley /* For each fine grid cell */ 28234ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 28244ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 28254ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 28264ef9d792SMatthew G. Knepley 28279566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28289566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2829d0f6233fSMatthew G. Knepley PetscCheck(numFIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %" PetscInt_FMT " != %" PetscInt_FMT " dual basis vecs", numFIndices, totDim); 28304ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 28314ef9d792SMatthew G. Knepley Vec pointVec; 28324ef9d792SMatthew G. Knepley PetscScalar *pV; 283312111d7cSToby Isaac PetscSF coarseCellSF = NULL; 28343a93e3b7SToby Isaac const PetscSFNode *coarseCells; 2835d0f6233fSMatthew G. Knepley PetscInt numCoarseCells, cpdim, row = findices[i + off], q, c, j; 28364ef9d792SMatthew G. Knepley 28374ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 28389566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(Q, i, &f)); 28399566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights)); 284063a3b9bcSJacob Faibussowitsch PetscCheck(qNc == Nc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, qNc, Nc); 28419566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Np * dim, &pointVec)); 28429566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 28439566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28444ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2845c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2846c330f8ffSToby Isaac 28474ef9d792SMatthew G. Knepley /* Transform point to real space */ 2848c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 28494ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 28504ef9d792SMatthew G. Knepley } 28519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28524ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 28531555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 28549566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 28554ef9d792SMatthew G. Knepley /* Update preallocation info */ 28569566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 28575f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Np, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 28589566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 28594ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2860826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2861c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2862826eb36dSMatthew G. Knepley 28639566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 2864a0806964SMatthew G. Knepley if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetDimension((PetscFE)obj, &cpdim)); 2865a0806964SMatthew G. Knepley else cpdim = 1; 2866a0806964SMatthew G. Knepley 2867a0806964SMatthew G. Knepley if (s) { 28684ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 28699566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 2870e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 2871c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 28724ef9d792SMatthew G. Knepley 28734ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 28744ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2875a0806964SMatthew G. Knepley PetscCall(PetscFEComputeTabulation((PetscFE)obj, 1, x, 0, T)); 28769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 28774ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 28784ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2879ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * qweights[ccell * qNc + c]; 28804ef9d792SMatthew G. Knepley } 28814ef9d792SMatthew G. Knepley } else { 28824ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 28839c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * qweights[ccell * qNc + c]; 28844ef9d792SMatthew G. Knepley } 28854ef9d792SMatthew G. Knepley } 28869566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 2887a0806964SMatthew G. Knepley } 2888a0806964SMatthew G. Knepley /* Update interpolator */ 2889d0f6233fSMatthew G. Knepley PetscCheck(numCIndices == totDim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, totDim); 2890a0806964SMatthew G. Knepley PetscCall(MatSetValues(interp, 1, &row, cpdim, &cindices[off], elemMat, INSERT_VALUES)); 28919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 28924ef9d792SMatthew G. Knepley } 28939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 28949566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 28959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 28964ef9d792SMatthew G. Knepley } 28979566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 28984ef9d792SMatthew G. Knepley } 2899a0806964SMatthew G. Knepley if (s && id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 2900a0806964SMatthew G. Knepley } 2901a0806964SMatthew G. Knepley if (!s) { 2902a0806964SMatthew G. Knepley PetscCall(MatAssemblyBegin(interp, MAT_FINAL_ASSEMBLY)); 2903a0806964SMatthew G. Knepley PetscCall(MatAssemblyEnd(interp, MAT_FINAL_ASSEMBLY)); 2904a0806964SMatthew G. Knepley PetscCall(MatPreallocatorPreallocate(interp, PETSC_TRUE, In)); 2905a0806964SMatthew G. Knepley PetscCall(MatDestroy(&interp)); 2906a0806964SMatthew G. Knepley interp = In; 2907a0806964SMatthew G. Knepley } 29084ef9d792SMatthew G. Knepley } 29099566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 29109566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 29119566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 29129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY)); 29139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY)); 29149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InterpolatorFEM, dmc, dmf, 0, 0)); 29153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29164ef9d792SMatthew G. Knepley } 29174ef9d792SMatthew G. Knepley 291846fa42a0SMatthew G. Knepley /*@ 2919a1cb98faSBarry Smith DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse `DM` to a non-nested fine `DM`. 2920bd041c0cSMatthew G. Knepley 2921bd041c0cSMatthew G. Knepley Input Parameters: 2922bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2923bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2924bd041c0cSMatthew G. Knepley - user - The user context 2925bd041c0cSMatthew G. Knepley 2926bd041c0cSMatthew G. Knepley Output Parameter: 2927bd041c0cSMatthew G. Knepley . mass - The mass matrix 2928bd041c0cSMatthew G. Knepley 2929bd041c0cSMatthew G. Knepley Level: developer 2930bd041c0cSMatthew G. Knepley 2931a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeMassMatrixNested()`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeInterpolatorGeneral()`, `DMPlexComputeJacobianFEM()` 2932bd041c0cSMatthew G. Knepley @*/ 2933d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2934d71ae5a4SJacob Faibussowitsch { 2935bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dmf->data; 2936bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2937bd041c0cSMatthew G. Knepley PetscDS prob; 2938bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2939e8f14785SLisandro Dalcin PetscHSetIJ ht; 2940bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2941bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2942bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2943bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2944bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2945bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2946bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2947bd041c0cSMatthew G. Knepley 2948bd041c0cSMatthew G. Knepley PetscFunctionBegin; 29499566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dmc, &dim)); 29509566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 29519566063dSJacob Faibussowitsch PetscCall(PetscDSGetWorkspace(prob, &x, NULL, NULL, NULL, NULL)); 29529566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 29539566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29549566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(dim, &v0c, dim * dim, &Jc, dim * dim, &invJc)); 29559566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 29569566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &globalFSection)); 29579566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 29589566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &globalCSection)); 29599566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd)); 29609566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 29619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(totDim, &elemMat)); 2962bd041c0cSMatthew G. Knepley 29639566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mass, &locRows, NULL)); 29649566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(PetscObjectComm((PetscObject)mass), &rLayout)); 29659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(rLayout, locRows)); 29669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(rLayout, 1)); 29679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rLayout)); 29689566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(rLayout, &rStart, &rEnd)); 29699566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rLayout)); 29709566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(locRows, &dnz, locRows, &onz)); 29719566063dSJacob Faibussowitsch PetscCall(PetscHSetIJCreate(&ht)); 2972bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2973bd041c0cSMatthew G. Knepley PetscObject obj; 2974bd041c0cSMatthew G. Knepley PetscClassId id; 2975bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2976bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2977bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2978bd041c0cSMatthew G. Knepley 29799566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 29809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 29819566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 29829566063dSJacob Faibussowitsch else PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 29839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL)); 2984bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2985bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2986bd041c0cSMatthew G. Knepley Vec pointVec; 2987bd041c0cSMatthew G. Knepley PetscScalar *pV; 2988bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2989bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2990bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2991bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2992bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2993bd041c0cSMatthew G. Knepley 29949566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 29959566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 2996bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 29979566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 29989566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 29999566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3000bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3001c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3002c330f8ffSToby Isaac 3003bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3004c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3005bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3006bd041c0cSMatthew G. Knepley } 30079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3008bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30099566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 30109566063dSJacob Faibussowitsch PetscCall(PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view")); 3011bd041c0cSMatthew G. Knepley /* Update preallocation info */ 30129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30135f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 3014bd041c0cSMatthew G. Knepley { 3015e8f14785SLisandro Dalcin PetscHashIJKey key; 3016e8f14785SLisandro Dalcin PetscBool missing; 3017bd041c0cSMatthew G. Knepley 3018bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 3019e8f14785SLisandro Dalcin key.i = findices[i]; 3020e8f14785SLisandro Dalcin if (key.i >= 0) { 3021bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 3022bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 30239566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3024bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 3025e8f14785SLisandro Dalcin key.j = cindices[c]; 3026e8f14785SLisandro Dalcin if (key.j < 0) continue; 30279566063dSJacob Faibussowitsch PetscCall(PetscHSetIJQueryAdd(ht, key, &missing)); 3028bd041c0cSMatthew G. Knepley if (missing) { 3029e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i - rStart]; 3030e8f14785SLisandro Dalcin else ++onz[key.i - rStart]; 3031bd041c0cSMatthew G. Knepley } 3032bd041c0cSMatthew G. Knepley } 30339566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3034bd041c0cSMatthew G. Knepley } 3035bd041c0cSMatthew G. Knepley } 3036bd041c0cSMatthew G. Knepley } 3037bd041c0cSMatthew G. Knepley } 30389566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 30399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 30409566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3041bd041c0cSMatthew G. Knepley } 3042bd041c0cSMatthew G. Knepley } 30439566063dSJacob Faibussowitsch PetscCall(PetscHSetIJDestroy(&ht)); 30449566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL)); 30459566063dSJacob Faibussowitsch PetscCall(MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 30469566063dSJacob Faibussowitsch PetscCall(PetscFree2(dnz, onz)); 3047bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 3048bd041c0cSMatthew G. Knepley PetscObject obj; 3049bd041c0cSMatthew G. Knepley PetscClassId id; 3050ef0bb6c7SMatthew G. Knepley PetscTabulation T, Tfine; 3051bd041c0cSMatthew G. Knepley PetscQuadrature quad; 3052bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 3053bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 3054bd041c0cSMatthew G. Knepley 30559566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 30569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3057ef0bb6c7SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 30589566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature((PetscFE)obj, &quad)); 30599566063dSJacob Faibussowitsch PetscCall(PetscFEGetCellTabulation((PetscFE)obj, 1, &Tfine)); 30609566063dSJacob Faibussowitsch PetscCall(PetscFECreateTabulation((PetscFE)obj, 1, 1, x, 0, &T)); 3061ef0bb6c7SMatthew G. Knepley } else { 30629566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature((PetscFV)obj, &quad)); 3063ef0bb6c7SMatthew G. Knepley } 30649566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights)); 3065bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 3066bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 3067bd041c0cSMatthew G. Knepley Vec pointVec; 3068bd041c0cSMatthew G. Knepley PetscScalar *pV; 3069bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 3070bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 3071bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 3072bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 3073bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 3074bd041c0cSMatthew G. Knepley 30759566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 30769566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ)); 3077bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 30789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, Nq * dim, &pointVec)); 30799566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(pointVec, dim)); 30809566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3081bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 3082c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3083c330f8ffSToby Isaac 3084bd041c0cSMatthew G. Knepley /* Transform point to real space */ 3085c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], x); 3086bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q * dim + d] = x[d]; 3087bd041c0cSMatthew G. Knepley } 30889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 3089bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 30909566063dSJacob Faibussowitsch PetscCall(DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF)); 3091bd041c0cSMatthew G. Knepley /* Update matrix */ 30929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells)); 30935f80ce2aSJacob Faibussowitsch PetscCheck(numCoarseCells == Nq, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Not all closure points located"); 30949566063dSJacob Faibussowitsch PetscCall(VecGetArray(pointVec, &pV)); 3095bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 3096bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 3097c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 3098c330f8ffSToby Isaac 30999566063dSJacob Faibussowitsch PetscCall(DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3100bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 31019566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc)); 3102bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell * dim + d]); 3103c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 3104bd041c0cSMatthew G. Knepley 3105bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 3106bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 3107bd041c0cSMatthew G. Knepley 3108bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 31099566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &cpdim)); 31109566063dSJacob Faibussowitsch PetscCall(PetscFEComputeTabulation(fe, 1, x, 0, T)); 3111bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 3112bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3114bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3115ef0bb6c7SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += T->T[0][j * Nc + c] * Tfine->T[0][(ccell * numFIndices + i) * Nc + c] * qweights[ccell * Nc + c] * detJ; 3116bd041c0cSMatthew G. Knepley } 3117bd041c0cSMatthew G. Knepley /* Update interpolator */ 31189566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 311963a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31209566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3121bd041c0cSMatthew G. Knepley } 3122bd041c0cSMatthew G. Knepley } else { 3123bd041c0cSMatthew G. Knepley cpdim = 1; 3124bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 31259566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, cpdim)); 3126bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 3127bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0 * 1.0 * qweights[ccell * Nc + c] * detJ; 3128bd041c0cSMatthew G. Knepley } 3129bd041c0cSMatthew G. Knepley /* Update interpolator */ 31309566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat)); 313163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Nq: %" PetscInt_FMT " %" PetscInt_FMT " Nf: %" PetscInt_FMT " %" PetscInt_FMT " Nc: %" PetscInt_FMT " %" PetscInt_FMT "\n", ccell, Nq, i, numFIndices, j, numCIndices)); 313263a3b9bcSJacob Faibussowitsch PetscCheck(numCIndices == cpdim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %" PetscInt_FMT " != %" PetscInt_FMT, numCIndices, cpdim); 31339566063dSJacob Faibussowitsch PetscCall(MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES)); 3134bd041c0cSMatthew G. Knepley } 3135bd041c0cSMatthew G. Knepley } 31369566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, PETSC_FALSE, &numCIndices, &cindices, NULL, NULL)); 3137bd041c0cSMatthew G. Knepley } 31389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(pointVec, &pV)); 31399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&coarseCellSF)); 31409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&pointVec)); 31419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, PETSC_FALSE, &numFIndices, &findices, NULL, NULL)); 3142bd041c0cSMatthew G. Knepley } 31439566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscTabulationDestroy(&T)); 3144bd041c0cSMatthew G. Knepley } 31459566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0, J, invJ)); 31469566063dSJacob Faibussowitsch PetscCall(PetscFree3(v0c, Jc, invJc)); 31479566063dSJacob Faibussowitsch PetscCall(PetscFree(elemMat)); 31489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY)); 31499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY)); 31503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3151bd041c0cSMatthew G. Knepley } 3152bd041c0cSMatthew G. Knepley 3153bd041c0cSMatthew G. Knepley /*@ 315446fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 315546fa42a0SMatthew G. Knepley 315646fa42a0SMatthew G. Knepley Input Parameters: 315746fa42a0SMatthew G. Knepley + dmc - The coarse mesh 315846fa42a0SMatthew G. Knepley - dmf - The fine mesh 315946fa42a0SMatthew G. Knepley - user - The user context 316046fa42a0SMatthew G. Knepley 316146fa42a0SMatthew G. Knepley Output Parameter: 316246fa42a0SMatthew G. Knepley . sc - The mapping 316346fa42a0SMatthew G. Knepley 316446fa42a0SMatthew G. Knepley Level: developer 316546fa42a0SMatthew G. Knepley 3166a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexComputeInterpolatorNested()`, `DMPlexComputeJacobianFEM()` 316746fa42a0SMatthew G. Knepley @*/ 3168d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 3169d71ae5a4SJacob Faibussowitsch { 3170e9d4ef1bSMatthew G. Knepley PetscDS prob; 31717c927364SMatthew G. Knepley PetscFE *feRef; 317297c42addSMatthew G. Knepley PetscFV *fvRef; 31737c927364SMatthew G. Knepley Vec fv, cv; 31747c927364SMatthew G. Knepley IS fis, cis; 31757c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 31767c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 3177485ad865SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, c, dim, d, startC, endC, offsetC, offsetF, m; 31786f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 31797c927364SMatthew G. Knepley 31807c927364SMatthew G. Knepley PetscFunctionBegin; 31819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 31829566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dmf, &dim)); 31839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmf, &fsection)); 31849566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmf, &fglobalSection)); 31859566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmc, &csection)); 31869566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dmc, &cglobalSection)); 31879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(fsection, &Nf)); 31889566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dmc, 0, &cStart, &cEnd)); 31899566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmc, &prob)); 31909566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(Nf, &feRef, Nf, &fvRef, Nf, &needAvg)); 31917c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 319297c42addSMatthew G. Knepley PetscObject obj; 319397c42addSMatthew G. Knepley PetscClassId id; 3194aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 31957c927364SMatthew G. Knepley 31969566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 31979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 319897c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 319997c42addSMatthew G. Knepley PetscFE fe = (PetscFE)obj; 32006f3d3cbcSMatthew G. Knepley PetscSpace sp; 32019b2fc754SMatthew G. Knepley PetscInt maxDegree; 320297c42addSMatthew G. Knepley 32039566063dSJacob Faibussowitsch PetscCall(PetscFERefine(fe, &feRef[f])); 32049566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feRef[f], &fNb)); 32059566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 32069566063dSJacob Faibussowitsch PetscCall(PetscFEGetBasisSpace(fe, &sp)); 32079566063dSJacob Faibussowitsch PetscCall(PetscSpaceGetDegree(sp, NULL, &maxDegree)); 32089b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 320997c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 321097c42addSMatthew G. Knepley PetscFV fv = (PetscFV)obj; 321197c42addSMatthew G. Knepley PetscDualSpace Q; 321297c42addSMatthew G. Knepley 32139566063dSJacob Faibussowitsch PetscCall(PetscFVRefine(fv, &fvRef[f])); 32149566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[f], &Q)); 32159566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(Q, &fNb)); 32169566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 32176f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 321897c42addSMatthew G. Knepley } 3219d172c84bSMatthew G. Knepley fTotDim += fNb; 32207c927364SMatthew G. Knepley } 32219566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &cTotDim)); 32229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cTotDim, &cmap)); 32237c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 32247c927364SMatthew G. Knepley PetscFE feC; 322597c42addSMatthew G. Knepley PetscFV fvC; 32267c927364SMatthew G. Knepley PetscDualSpace QF, QC; 3227d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 32287c927364SMatthew G. Knepley 322997c42addSMatthew G. Knepley if (feRef[field]) { 32309566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&feC)); 32319566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feC, &NcC)); 32329566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(feRef[field], &NcF)); 32339566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feRef[field], &QF)); 32349566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetOrder(QF, &order)); 32359566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32369566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(feC, &QC)); 32379566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 323897c42addSMatthew G. Knepley } else { 32399566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, (PetscObject *)&fvC)); 32409566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvC, &NcC)); 32419566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fvRef[field], &NcF)); 32429566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvRef[field], &QF)); 32439566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QF, &fpdim)); 32449566063dSJacob Faibussowitsch PetscCall(PetscFVGetDualSpace(fvC, &QC)); 32459566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(QC, &cpdim)); 324697c42addSMatthew G. Knepley } 324763a3b9bcSJacob Faibussowitsch PetscCheck(NcF == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %" PetscInt_FMT " does not match coarse field %" PetscInt_FMT, NcF, NcC); 32487c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 32497c927364SMatthew G. Knepley PetscQuadrature cfunc; 3250d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 3251d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 325297c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 32537c927364SMatthew G. Knepley 32549566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QC, c, &cfunc)); 32559566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights)); 325663a3b9bcSJacob Faibussowitsch PetscCheck(NqcC == NcC, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcC, NcC); 32571dca8a05SBarry Smith PetscCheck(NpC == 1 || !feRef[field], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 32587c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 32597c927364SMatthew G. Knepley PetscQuadrature ffunc; 3260d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 32617c927364SMatthew G. Knepley PetscReal sum = 0.0; 3262d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 32637c927364SMatthew G. Knepley 32649566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetFunctional(QF, f, &ffunc)); 32659566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights)); 326663a3b9bcSJacob Faibussowitsch PetscCheck(NqcF == NcF, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %" PetscInt_FMT " must match number of field components %" PetscInt_FMT, NqcF, NcF); 32677c927364SMatthew G. Knepley if (NpC != NpF) continue; 32687c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 32697c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 3270d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d] * fqweights[d]); 3271d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 3272d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + f; 327397c42addSMatthew G. Knepley found = PETSC_TRUE; 32747c927364SMatthew G. Knepley break; 32757c927364SMatthew G. Knepley } 327697c42addSMatthew G. Knepley if (!found) { 327797c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 3278d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 3279d172c84bSMatthew G. Knepley cmap[offsetC + c] = offsetF + 0; 328097c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 328197c42addSMatthew G. Knepley } 32827c927364SMatthew G. Knepley } 3283d172c84bSMatthew G. Knepley offsetC += cpdim; 3284d172c84bSMatthew G. Knepley offsetF += fpdim; 32857c927364SMatthew G. Knepley } 32869371c9d4SSatish Balay for (f = 0; f < Nf; ++f) { 32879371c9d4SSatish Balay PetscCall(PetscFEDestroy(&feRef[f])); 32889371c9d4SSatish Balay PetscCall(PetscFVDestroy(&fvRef[f])); 32899371c9d4SSatish Balay } 32909566063dSJacob Faibussowitsch PetscCall(PetscFree3(feRef, fvRef, needAvg)); 32917c927364SMatthew G. Knepley 32929566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmf, &fv)); 32939566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmc, &cv)); 32949566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(cv, &startC, &endC)); 32959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(cglobalSection, &m)); 32969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cTotDim, &cellCIndices, fTotDim, &cellFIndices)); 32979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &cindices)); 32989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &findices)); 32997c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 33007c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33019566063dSJacob Faibussowitsch PetscCall(DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices)); 33027c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 33030bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 330463a3b9bcSJacob Faibussowitsch PetscCheck(!(findices[cellCIndices[d] - startC] >= 0) || !(findices[cellCIndices[d] - startC] != cellFIndices[cmap[d]]), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %" PetscInt_FMT " maps to both %" PetscInt_FMT " and %" PetscInt_FMT, cindices[cellCIndices[d] - startC], findices[cellCIndices[d] - startC], cellFIndices[cmap[d]]); 33057c927364SMatthew G. Knepley cindices[cellCIndices[d] - startC] = cellCIndices[d]; 33067c927364SMatthew G. Knepley findices[cellCIndices[d] - startC] = cellFIndices[cmap[d]]; 33077c927364SMatthew G. Knepley } 33087c927364SMatthew G. Knepley } 33099566063dSJacob Faibussowitsch PetscCall(PetscFree(cmap)); 33109566063dSJacob Faibussowitsch PetscCall(PetscFree2(cellCIndices, cellFIndices)); 33117c927364SMatthew G. Knepley 33129566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis)); 33139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis)); 33149566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(cv, cis, fv, fis, sc)); 33159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cis)); 33169566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fis)); 33179566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmf, &fv)); 33189566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmc, &cv)); 33199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_InjectorFEM, dmc, dmf, 0, 0)); 33203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3321cb1e1211SMatthew G Knepley } 3322a1cf66bbSMatthew G. Knepley 33232f856554SMatthew G. Knepley /*@C 33242f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 33252f856554SMatthew G. Knepley 33262f856554SMatthew G. Knepley Input Parameters: 3327a1cb98faSBarry Smith + dm - The `DM` 33282f856554SMatthew G. Knepley . cellIS - The cells to include 33292f856554SMatthew G. Knepley . locX - A local vector with the solution fields 33302f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33312f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 33322f856554SMatthew G. Knepley 33332f856554SMatthew G. Knepley Output Parameters: 33342f856554SMatthew G. Knepley + u - The field coefficients 33352f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 33362f856554SMatthew G. Knepley - a - The auxiliary field coefficients 33372f856554SMatthew G. Knepley 33382f856554SMatthew G. Knepley Level: developer 33392f856554SMatthew G. Knepley 3340a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 33412f856554SMatthew G. Knepley @*/ 3342d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3343d71ae5a4SJacob Faibussowitsch { 33442f856554SMatthew G. Knepley DM plex, plexA = NULL; 3345a6e0b375SMatthew G. Knepley DMEnclosureType encAux; 33462f856554SMatthew G. Knepley PetscSection section, sectionAux; 33472f856554SMatthew G. Knepley PetscDS prob; 33482f856554SMatthew G. Knepley const PetscInt *cells; 33492f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 33502f856554SMatthew G. Knepley 33512f856554SMatthew G. Knepley PetscFunctionBegin; 33522f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3353064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(locX, VEC_CLASSID, 3); 3354ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 4); 3355ad540459SPierre Jolivet if (locA) PetscValidHeaderSpecific(locA, VEC_CLASSID, 5); 3356064a246eSJacob Faibussowitsch PetscValidPointer(u, 6); 3357064a246eSJacob Faibussowitsch PetscValidPointer(u_t, 7); 3358064a246eSJacob Faibussowitsch PetscValidPointer(a, 8); 33599566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dm, &plex, PETSC_FALSE)); 33609566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 33619566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 33629566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 33639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 33642f856554SMatthew G. Knepley if (locA) { 33652f856554SMatthew G. Knepley DM dmAux; 33662f856554SMatthew G. Knepley PetscDS probAux; 33672f856554SMatthew G. Knepley 33689566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 33699566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 33709566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE)); 33719566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 33729566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 33739566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 33742f856554SMatthew G. Knepley } 33752f856554SMatthew G. Knepley numCells = cEnd - cStart; 33769566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u)); 33779371c9d4SSatish Balay if (locX_t) PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, u_t)); 3378ad540459SPierre Jolivet else *u_t = NULL; 33799371c9d4SSatish Balay if (locA) PetscCall(DMGetWorkArray(dm, numCells * totDimAux, MPIU_SCALAR, a)); 3380ad540459SPierre Jolivet else *a = NULL; 33812f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 33822f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 33832f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 33842f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 33852f856554SMatthew G. Knepley PetscInt i; 33862f856554SMatthew G. Knepley 33879566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x)); 33882f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind * totDim + i] = x[i]; 33899566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x)); 33902f856554SMatthew G. Knepley if (locX_t) { 33919566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t)); 33922f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind * totDim + i] = x_t[i]; 33939566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t)); 33942f856554SMatthew G. Knepley } 33952f856554SMatthew G. Knepley if (locA) { 33962f856554SMatthew G. Knepley PetscInt subcell; 33979566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, cell, &subcell)); 33989566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 33992f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind * totDimAux + i] = x[i]; 34009566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x)); 34012f856554SMatthew G. Knepley } 34022f856554SMatthew G. Knepley } 34039566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 34049566063dSJacob Faibussowitsch if (locA) PetscCall(DMDestroy(&plexA)); 34059566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 34063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34072f856554SMatthew G. Knepley } 34082f856554SMatthew G. Knepley 34092f856554SMatthew G. Knepley /*@C 34102f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 34112f856554SMatthew G. Knepley 34122f856554SMatthew G. Knepley Input Parameters: 3413a1cb98faSBarry Smith + dm - The `DM` 34142f856554SMatthew G. Knepley . cellIS - The cells to include 34152f856554SMatthew G. Knepley . locX - A local vector with the solution fields 34162f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 34172f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 34182f856554SMatthew G. Knepley 34192f856554SMatthew G. Knepley Output Parameters: 34202f856554SMatthew G. Knepley + u - The field coefficients 34212f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 34222f856554SMatthew G. Knepley - a - The auxiliary field coefficients 34232f856554SMatthew G. Knepley 34242f856554SMatthew G. Knepley Level: developer 34252f856554SMatthew G. Knepley 3426a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 34272f856554SMatthew G. Knepley @*/ 3428d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 3429d71ae5a4SJacob Faibussowitsch { 34302f856554SMatthew G. Knepley PetscFunctionBegin; 34319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u)); 34329566063dSJacob Faibussowitsch if (locX_t) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t)); 34339566063dSJacob Faibussowitsch if (locA) PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a)); 34343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34352f856554SMatthew G. Knepley } 34362f856554SMatthew G. Knepley 3437faff4f7fSMatthew G. Knepley /* 3438faff4f7fSMatthew G. Knepley Get the auxiliary field vectors for the negative side (s = 0) and positive side (s = 1) of the interfaace 3439faff4f7fSMatthew G. Knepley */ 3440d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetHybridAuxFields(DM dm, DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 3441d71ae5a4SJacob Faibussowitsch { 344204c51a94SMatthew G. Knepley DM plexA[2]; 3443148442b3SMatthew G. Knepley DMEnclosureType encAux[2]; 344404c51a94SMatthew G. Knepley PetscSection sectionAux[2]; 34456528b96dSMatthew G. Knepley const PetscInt *cells; 3446148442b3SMatthew G. Knepley PetscInt cStart, cEnd, numCells, c, s, totDimAux[2]; 34476528b96dSMatthew G. Knepley 34486528b96dSMatthew G. Knepley PetscFunctionBegin; 3449148442b3SMatthew G. Knepley PetscValidPointer(locA, 5); 34503ba16761SJacob Faibussowitsch if (!locA[0] || !locA[1]) PetscFunctionReturn(PETSC_SUCCESS); 3451148442b3SMatthew G. Knepley PetscValidPointer(dmAux, 2); 3452148442b3SMatthew G. Knepley PetscValidPointer(dsAux, 3); 3453148442b3SMatthew G. Knepley PetscValidPointer(a, 6); 34549566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 34556528b96dSMatthew G. Knepley numCells = cEnd - cStart; 3456148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 3457148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dmAux[s], DM_CLASSID, 2); 3458148442b3SMatthew G. Knepley PetscValidHeaderSpecific(dsAux[s], PETSCDS_CLASSID, 3); 3459148442b3SMatthew G. Knepley PetscValidHeaderSpecific(locA[s], VEC_CLASSID, 5); 34609566063dSJacob Faibussowitsch PetscCall(DMPlexConvertPlex(dmAux[s], &plexA[s], PETSC_FALSE)); 34619566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux[s], dm, &encAux[s])); 34629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux[s], §ionAux[s])); 34639566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[s], &totDimAux[s])); 34649566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dmAux[s], numCells * totDimAux[s], MPIU_SCALAR, &a[s])); 346504c51a94SMatthew G. Knepley } 3466148442b3SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 34676528b96dSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 34686528b96dSMatthew G. Knepley const PetscInt cind = c - cStart; 34696528b96dSMatthew G. Knepley const PetscInt *cone, *ornt; 34706528b96dSMatthew G. Knepley 34719566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 34729566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 3473148442b3SMatthew G. Knepley for (s = 0; s < 2; ++s) { 34745fedec97SMatthew G. Knepley const PetscInt *support; 3475148442b3SMatthew G. Knepley PetscScalar *x = NULL, *al = a[s]; 3476148442b3SMatthew G. Knepley const PetscInt tdA = totDimAux[s]; 34775fedec97SMatthew G. Knepley PetscInt ssize, scell; 3478148442b3SMatthew G. Knepley PetscInt subface, Na, i; 34796528b96dSMatthew G. Knepley 34809566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[s], &support)); 34819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[s], &ssize)); 348263a3b9bcSJacob Faibussowitsch PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[s], cell, ssize); 34835fedec97SMatthew G. Knepley if (support[0] == cell) scell = support[1]; 34845fedec97SMatthew G. Knepley else if (support[1] == cell) scell = support[0]; 348563a3b9bcSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[s], cell); 34865fedec97SMatthew G. Knepley 34879566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA[s], dm, encAux[s], scell, &subface)); 34889566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34896528b96dSMatthew G. Knepley for (i = 0; i < Na; ++i) al[cind * tdA + i] = x[i]; 34909566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA[s], sectionAux[s], locA[s], subface, &Na, &x)); 34916528b96dSMatthew G. Knepley } 34926528b96dSMatthew G. Knepley } 34939566063dSJacob Faibussowitsch for (s = 0; s < 2; ++s) PetscCall(DMDestroy(&plexA[s])); 34949566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 34953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34966528b96dSMatthew G. Knepley } 34976528b96dSMatthew G. Knepley 3498d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexRestoreHybridAuxFields(DM dmAux[], PetscDS dsAux[], IS cellIS, Vec locA[], PetscScalar *a[]) 3499d71ae5a4SJacob Faibussowitsch { 35006528b96dSMatthew G. Knepley PetscFunctionBegin; 35013ba16761SJacob Faibussowitsch if (!locA[0] || !locA[1]) PetscFunctionReturn(PETSC_SUCCESS); 35029566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[0], 0, MPIU_SCALAR, &a[0])); 35039566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dmAux[1], 0, MPIU_SCALAR, &a[1])); 35043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35056528b96dSMatthew G. Knepley } 35066528b96dSMatthew G. Knepley 35072f856554SMatthew G. Knepley /*@C 35082f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 35092f856554SMatthew G. Knepley 35102f856554SMatthew G. Knepley Input Parameters: 3511a1cb98faSBarry Smith + dm - The `DM` 35122f856554SMatthew G. Knepley . fStart - The first face to include 35132f856554SMatthew G. Knepley . fEnd - The first face to exclude 35142f856554SMatthew G. Knepley . locX - A local vector with the solution fields 35152f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 35162f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 35172f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 35182f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 35192f856554SMatthew G. Knepley 35202f856554SMatthew G. Knepley Output Parameters: 35212f856554SMatthew G. Knepley + Nface - The number of faces with field values 35222f856554SMatthew G. Knepley . uL - The field values at the left side of the face 35232f856554SMatthew G. Knepley - uR - The field values at the right side of the face 35242f856554SMatthew G. Knepley 35252f856554SMatthew G. Knepley Level: developer 35262f856554SMatthew G. Knepley 3527a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 35282f856554SMatthew G. Knepley @*/ 3529d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3530d71ae5a4SJacob Faibussowitsch { 35312f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 35322f856554SMatthew G. Knepley PetscSection section; 35332f856554SMatthew G. Knepley PetscDS prob; 35342f856554SMatthew G. Knepley DMLabel ghostLabel; 35352f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 35362f856554SMatthew G. Knepley PetscBool *isFE; 35372f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 35382f856554SMatthew G. Knepley 35392f856554SMatthew G. Knepley PetscFunctionBegin; 35402f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35412f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 3542ad540459SPierre Jolivet if (locX_t) PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5); 35432f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 35442f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 3545ad540459SPierre Jolivet if (locGrad) PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8); 3546064a246eSJacob Faibussowitsch PetscValidPointer(uL, 10); 3547064a246eSJacob Faibussowitsch PetscValidPointer(uR, 11); 35489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35499566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 35509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 35519566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 35529566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalComponents(prob, &Nc)); 35539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &isFE)); 35542f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35552f856554SMatthew G. Knepley PetscObject obj; 35562f856554SMatthew G. Knepley PetscClassId id; 35572f856554SMatthew G. Knepley 35589566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 35599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 35609371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 35619371c9d4SSatish Balay isFE[f] = PETSC_TRUE; 35629371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 35639371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 35649371c9d4SSatish Balay } else { 35659371c9d4SSatish Balay isFE[f] = PETSC_FALSE; 35669371c9d4SSatish Balay } 35672f856554SMatthew G. Knepley } 35689566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 35699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locX, &x)); 35709566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 35719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 35729566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 35739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 35742f856554SMatthew G. Knepley if (locGrad) { 35759566063dSJacob Faibussowitsch PetscCall(VecGetDM(locGrad, &dmGrad)); 35769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(locGrad, &lgrad)); 35772f856554SMatthew G. Knepley } 35789566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uL)); 35799566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * Nc, MPIU_SCALAR, uR)); 35802f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 35812f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 35822f856554SMatthew G. Knepley const PetscInt *cells; 35832f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 35842f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 35852f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 35862f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 35872f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 35882f856554SMatthew G. Knepley 35899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 35909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 35919566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 35922f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 35939566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 35949566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 35959566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 35969566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 35972f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 35982f856554SMatthew G. Knepley PetscInt off; 35992f856554SMatthew G. Knepley 36009566063dSJacob Faibussowitsch PetscCall(PetscDSGetComponentOffset(prob, f, &off)); 36012f856554SMatthew G. Knepley if (isFE[f]) { 36022f856554SMatthew G. Knepley const PetscInt *cone; 36032f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 36042f856554SMatthew G. Knepley 36052f856554SMatthew G. Knepley xL = xR = NULL; 36069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 36079566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 36089566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 36099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[0], &cone)); 36109566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[0], &coneSizeL)); 36119371c9d4SSatish Balay for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) 36129371c9d4SSatish Balay if (cone[faceLocL] == face) break; 36139566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cells[1], &cone)); 36149566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cells[1], &coneSizeR)); 36159371c9d4SSatish Balay for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) 36169371c9d4SSatish Balay if (cone[faceLocR] == face) break; 36171dca8a05SBarry Smith PetscCheck(faceLocL != coneSizeL || faceLocR != coneSizeR, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %" PetscInt_FMT " in cone of cell %" PetscInt_FMT " or cell %" PetscInt_FMT, face, cells[0], cells[1]); 36182f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 36192f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 36202f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 36219566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocL, xL, &uLl[iface * Nc + off])); 36229566063dSJacob Faibussowitsch if (rdof == ldof && faceLocR < coneSizeR) PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 36232f856554SMatthew G. Knepley else { 36249371c9d4SSatish Balay for (d = 0; d < comp; ++d) uRl[iface * Nc + off + d] = uLl[iface * Nc + off + d]; 36259371c9d4SSatish Balay } 36269371c9d4SSatish Balay } else { 36279566063dSJacob Faibussowitsch PetscCall(PetscFEEvaluateFaceFields_Internal(prob, f, faceLocR, xR, &uRl[iface * Nc + off])); 36289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &comp)); 36292f856554SMatthew G. Knepley for (d = 0; d < comp; ++d) uLl[iface * Nc + off + d] = uRl[iface * Nc + off + d]; 36302f856554SMatthew G. Knepley } 36319566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **)&xL)); 36329566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **)&xR)); 36332f856554SMatthew G. Knepley } else { 36342f856554SMatthew G. Knepley PetscFV fv; 36352f856554SMatthew G. Knepley PetscInt numComp, c; 36362f856554SMatthew G. Knepley 36379566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, (PetscObject *)&fv)); 36389566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &numComp)); 36399566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL)); 36409566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR)); 36412f856554SMatthew G. Knepley if (dmGrad) { 36422f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 36432f856554SMatthew G. Knepley 36449566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL)); 36459566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR)); 36462f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 36472f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 36482f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 36492f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c * dim], dxL); 36502f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c * dim], dxR); 36512f856554SMatthew G. Knepley } 36522f856554SMatthew G. Knepley } else { 36532f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 36542f856554SMatthew G. Knepley uLl[iface * Nc + off + c] = xL[c]; 36552f856554SMatthew G. Knepley uRl[iface * Nc + off + c] = xR[c]; 36562f856554SMatthew G. Knepley } 36572f856554SMatthew G. Knepley } 36582f856554SMatthew G. Knepley } 36592f856554SMatthew G. Knepley } 36602f856554SMatthew G. Knepley ++iface; 36612f856554SMatthew G. Knepley } 36622f856554SMatthew G. Knepley *Nface = iface; 36639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(locX, &x)); 36649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 36659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 366648a46eb9SPierre Jolivet if (locGrad) PetscCall(VecRestoreArrayRead(locGrad, &lgrad)); 36679566063dSJacob Faibussowitsch PetscCall(PetscFree(isFE)); 36683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36692f856554SMatthew G. Knepley } 36702f856554SMatthew G. Knepley 36712f856554SMatthew G. Knepley /*@C 36722f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 36732f856554SMatthew G. Knepley 36742f856554SMatthew G. Knepley Input Parameters: 3675a1cb98faSBarry Smith + dm - The `DM` 36762f856554SMatthew G. Knepley . fStart - The first face to include 36772f856554SMatthew G. Knepley . fEnd - The first face to exclude 36782f856554SMatthew G. Knepley . locX - A local vector with the solution fields 36792f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 36802f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 36812f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 36822f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 36832f856554SMatthew G. Knepley 36842f856554SMatthew G. Knepley Output Parameters: 36852f856554SMatthew G. Knepley + Nface - The number of faces with field values 36862f856554SMatthew G. Knepley . uL - The field values at the left side of the face 36872f856554SMatthew G. Knepley - uR - The field values at the right side of the face 36882f856554SMatthew G. Knepley 36892f856554SMatthew G. Knepley Level: developer 36902f856554SMatthew G. Knepley 3691a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 36922f856554SMatthew G. Knepley @*/ 3693d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 3694d71ae5a4SJacob Faibussowitsch { 36952f856554SMatthew G. Knepley PetscFunctionBegin; 36969566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL)); 36979566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR)); 36983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36992f856554SMatthew G. Knepley } 37002f856554SMatthew G. Knepley 37012f856554SMatthew G. Knepley /*@C 37022f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 37032f856554SMatthew G. Knepley 37042f856554SMatthew G. Knepley Input Parameters: 3705a1cb98faSBarry Smith + dm - The `DM` 37062f856554SMatthew G. Knepley . fStart - The first face to include 37072f856554SMatthew G. Knepley . fEnd - The first face to exclude 37082f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 37092f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 37102f856554SMatthew G. Knepley 37112f856554SMatthew G. Knepley Output Parameters: 37122f856554SMatthew G. Knepley + Nface - The number of faces with field values 37132f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 37142f856554SMatthew G. Knepley - vol - The cell volume 37152f856554SMatthew G. Knepley 37162f856554SMatthew G. Knepley Level: developer 37172f856554SMatthew G. Knepley 3718a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetCellFields()` 37192f856554SMatthew G. Knepley @*/ 3720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3721d71ae5a4SJacob Faibussowitsch { 37222f856554SMatthew G. Knepley DM dmFace, dmCell; 37232f856554SMatthew G. Knepley DMLabel ghostLabel; 37242f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 37252f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 37262f856554SMatthew G. Knepley 37272f856554SMatthew G. Knepley PetscFunctionBegin; 37282f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37292f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 37302f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 3731064a246eSJacob Faibussowitsch PetscValidPointer(fgeom, 7); 3732064a246eSJacob Faibussowitsch PetscValidPointer(vol, 8); 37339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 37349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 37359566063dSJacob Faibussowitsch PetscCall(VecGetDM(faceGeometry, &dmFace)); 37369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometry, &facegeom)); 37379566063dSJacob Faibussowitsch PetscCall(VecGetDM(cellGeometry, &dmCell)); 37389566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometry, &cellgeom)); 37399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numFaces, fgeom)); 37409566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * 2, MPIU_SCALAR, vol)); 37412f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 37422f856554SMatthew G. Knepley const PetscInt *cells; 37432f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 37442f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 37452f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 37462f856554SMatthew G. Knepley PetscReal *voll = *vol; 37472f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 37482f856554SMatthew G. Knepley 37499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 37509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 37519566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 37522f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 37539566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmFace, face, facegeom, &fg)); 37549566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &cells)); 37559566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL)); 37569566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR)); 37572f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 37582f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 37592f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 37602f856554SMatthew G. Knepley } 37612f856554SMatthew G. Knepley voll[iface * 2 + 0] = cgL->volume; 37622f856554SMatthew G. Knepley voll[iface * 2 + 1] = cgR->volume; 37632f856554SMatthew G. Knepley ++iface; 37642f856554SMatthew G. Knepley } 37652f856554SMatthew G. Knepley *Nface = iface; 37669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(faceGeometry, &facegeom)); 37679566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(cellGeometry, &cellgeom)); 37683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37692f856554SMatthew G. Knepley } 37702f856554SMatthew G. Knepley 37712f856554SMatthew G. Knepley /*@C 37722f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 37732f856554SMatthew G. Knepley 37742f856554SMatthew G. Knepley Input Parameters: 3775a1cb98faSBarry Smith + dm - The `DM` 37762f856554SMatthew G. Knepley . fStart - The first face to include 37772f856554SMatthew G. Knepley . fEnd - The first face to exclude 37782f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 37792f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 37802f856554SMatthew G. Knepley 37812f856554SMatthew G. Knepley Output Parameters: 37822f856554SMatthew G. Knepley + Nface - The number of faces with field values 37832f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 37842f856554SMatthew G. Knepley - vol - The cell volume 37852f856554SMatthew G. Knepley 37862f856554SMatthew G. Knepley Level: developer 37872f856554SMatthew G. Knepley 3788a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetFaceFields()` 37892f856554SMatthew G. Knepley @*/ 3790d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 3791d71ae5a4SJacob Faibussowitsch { 37922f856554SMatthew G. Knepley PetscFunctionBegin; 37939566063dSJacob Faibussowitsch PetscCall(PetscFree(*fgeom)); 37949566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, 0, MPIU_REAL, vol)); 37953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37962f856554SMatthew G. Knepley } 37972f856554SMatthew G. Knepley 3798d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3799d71ae5a4SJacob Faibussowitsch { 3800a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3801a1cf66bbSMatthew G. Knepley PetscObjectId id; 3802a1cf66bbSMatthew G. Knepley PetscContainer container; 3803a1cf66bbSMatthew G. Knepley 3804a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 38059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetId((PetscObject)quad, &id)); 380663a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%" PetscInt64_FMT "\n", id)); 38079566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)pointIS, composeStr, (PetscObject *)&container)); 3808a1cf66bbSMatthew G. Knepley if (container) { 38099566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)geom)); 3810a1cf66bbSMatthew G. Knepley } else { 38119566063dSJacob Faibussowitsch PetscCall(DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom)); 38129566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 38139566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, (void *)*geom)); 38149566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom)); 38159566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)pointIS, composeStr, (PetscObject)container)); 38169566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 3817a1cf66bbSMatthew G. Knepley } 38183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3819a1cf66bbSMatthew G. Knepley } 3820a1cf66bbSMatthew G. Knepley 3821d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3822d71ae5a4SJacob Faibussowitsch { 3823a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3824a1cf66bbSMatthew G. Knepley *geom = NULL; 38253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3826a1cf66bbSMatthew G. Knepley } 3827a1cf66bbSMatthew G. Knepley 3828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 3829d71ae5a4SJacob Faibussowitsch { 383092d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 383192d50984SMatthew G. Knepley const char *name = "Residual"; 383292d50984SMatthew G. Knepley DM dmAux = NULL; 383392d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 383492d50984SMatthew G. Knepley PetscDS prob = NULL; 383592d50984SMatthew G. Knepley PetscDS probAux = NULL; 383692d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 383792d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 383892d50984SMatthew G. Knepley DMField coordField = NULL; 3839c0006e53SPatrick Farrell Vec locA; 3840c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 384192d50984SMatthew G. Knepley IS chunkIS; 384292d50984SMatthew G. Knepley const PetscInt *cells; 384392d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3844364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 384592d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 384606ad1575SMatthew G. Knepley PetscFormKey key; 384792d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 384892d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 384992d50984SMatthew G. Knepley 385092d50984SMatthew G. Knepley PetscFunctionBegin; 38519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 385292d50984SMatthew G. Knepley /* FEM+FVM */ 385392d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 38549566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 38559566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 38569566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 38579566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 38589566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &locA)); 385992d50984SMatthew G. Knepley if (locA) { 38609566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 38619566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 38629566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 386392d50984SMatthew G. Knepley } 386492d50984SMatthew G. Knepley /* 2: Get geometric data */ 386592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 386692d50984SMatthew G. Knepley PetscObject obj; 386792d50984SMatthew G. Knepley PetscClassId id; 386892d50984SMatthew G. Knepley PetscBool fimp; 386992d50984SMatthew G. Knepley 38709566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 387192d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38729566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 3874ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 38755f80ce2aSJacob Faibussowitsch PetscCheck(id != PETSCFV_CLASSID, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Use of FVM with PCPATCH not yet implemented"); 387692d50984SMatthew G. Knepley } 387792d50984SMatthew G. Knepley if (useFEM) { 38789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 38799566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 388092d50984SMatthew G. Knepley if (maxDegree <= 1) { 38819566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 388248a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 388392d50984SMatthew G. Knepley } else { 38849566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 388592d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 388692d50984SMatthew G. Knepley PetscObject obj; 388792d50984SMatthew G. Knepley PetscClassId id; 388892d50984SMatthew G. Knepley PetscBool fimp; 388992d50984SMatthew G. Knepley 38909566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 389192d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 38929566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 38939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 389492d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 389592d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 389692d50984SMatthew G. Knepley 38979566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 38989566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 38999566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 390092d50984SMatthew G. Knepley } 390192d50984SMatthew G. Knepley } 390292d50984SMatthew G. Knepley } 390392d50984SMatthew G. Knepley } 390492d50984SMatthew G. Knepley /* Loop over chunks */ 39059566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 39069566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 39079566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 390892d50984SMatthew G. Knepley numCells = cEnd - cStart; 390992d50984SMatthew G. Knepley numChunks = 1; 391092d50984SMatthew G. Knepley cellChunkSize = numCells / numChunks; 391192d50984SMatthew G. Knepley numChunks = PetscMin(1, numCells); 39126528b96dSMatthew G. Knepley key.label = NULL; 39136528b96dSMatthew G. Knepley key.value = 0; 391406ad1575SMatthew G. Knepley key.part = 0; 391592d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3916c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3917c0006e53SPatrick Farrell PetscReal *vol = NULL; 3918c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 391992d50984SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 3920c0006e53SPatrick Farrell PetscInt numFaces = 0; 392192d50984SMatthew G. Knepley 392292d50984SMatthew G. Knepley /* Extract field coefficients */ 392392d50984SMatthew G. Knepley if (useFEM) { 39249566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 39259566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 39269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 39279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 392892d50984SMatthew G. Knepley } 392992d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 393092d50984SMatthew G. Knepley /* Loop over fields */ 393192d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 393292d50984SMatthew G. Knepley PetscObject obj; 393392d50984SMatthew G. Knepley PetscClassId id; 393492d50984SMatthew G. Knepley PetscBool fimp; 393592d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 393692d50984SMatthew G. Knepley 39376528b96dSMatthew G. Knepley key.field = f; 39389566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(prob, f, &fimp)); 393992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 39409566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 39419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 394292d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 394392d50984SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 394492d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 394592d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 394692d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 394792d50984SMatthew G. Knepley PetscInt Nq, Nb; 394892d50984SMatthew G. Knepley 39499566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 39509566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 39519566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 395292d50984SMatthew G. Knepley blockSize = Nb; 395392d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 39549566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 395592d50984SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 395692d50984SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 395792d50984SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 395892d50984SMatthew G. Knepley offset = numCells - Nr; 395992d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 396092d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 39619566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 39629566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 39639566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 39649566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(prob, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 39659566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 396692d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 396792d50984SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 396892d50984SMatthew G. Knepley 396992d50984SMatthew G. Knepley Ne = numFaces; 397092d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 397192d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 39729566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 397363a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 397492d50984SMatthew G. Knepley } 397592d50984SMatthew G. Knepley /* Loop over domain */ 397692d50984SMatthew G. Knepley if (useFEM) { 397792d50984SMatthew G. Knepley /* Add elemVec to locX */ 397892d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 397992d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 398092d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 398192d50984SMatthew G. Knepley 39829566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 398392d50984SMatthew G. Knepley if (ghostLabel) { 398492d50984SMatthew G. Knepley PetscInt ghostVal; 398592d50984SMatthew G. Knepley 39869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 398792d50984SMatthew G. Knepley if (ghostVal > 0) continue; 398892d50984SMatthew G. Knepley } 39899566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 399092d50984SMatthew G. Knepley } 399192d50984SMatthew G. Knepley } 399292d50984SMatthew G. Knepley /* Handle time derivative */ 399392d50984SMatthew G. Knepley if (locX_t) { 399492d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 399592d50984SMatthew G. Knepley 39969566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 39979566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 399892d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 399992d50984SMatthew G. Knepley PetscFV fv; 400092d50984SMatthew G. Knepley PetscObject obj; 400192d50984SMatthew G. Knepley PetscClassId id; 400292d50984SMatthew G. Knepley PetscInt pdim, d; 400392d50984SMatthew G. Knepley 40049566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, f, &obj)); 40059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 400692d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 400792d50984SMatthew G. Knepley fv = (PetscFV)obj; 40089566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 400992d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 401092d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 401192d50984SMatthew G. Knepley PetscScalar *u_t, *r; 401292d50984SMatthew G. Knepley 401392d50984SMatthew G. Knepley if (ghostLabel) { 401492d50984SMatthew G. Knepley PetscInt ghostVal; 401592d50984SMatthew G. Knepley 40169566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 401792d50984SMatthew G. Knepley if (ghostVal > 0) continue; 401892d50984SMatthew G. Knepley } 40199566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 40209566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 402192d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 402292d50984SMatthew G. Knepley } 402392d50984SMatthew G. Knepley } 40249566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 40259566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 402692d50984SMatthew G. Knepley } 402792d50984SMatthew G. Knepley if (useFEM) { 40289566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 40299566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 403092d50984SMatthew G. Knepley } 403192d50984SMatthew G. Knepley } 40329566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 40339566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 403492d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 403592d50984SMatthew G. Knepley if (useFEM) { 403692d50984SMatthew G. Knepley if (maxDegree <= 1) { 40379566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 40389566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 403992d50984SMatthew G. Knepley } else { 404092d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 40419566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 40429566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 404392d50984SMatthew G. Knepley } 40449566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 404592d50984SMatthew G. Knepley } 404692d50984SMatthew G. Knepley } 40479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 40483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 404992d50984SMatthew G. Knepley } 405092d50984SMatthew G. Knepley 4051a1cf66bbSMatthew G. Knepley /* 4052a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 4053a1cf66bbSMatthew G. Knepley 4054a1cf66bbSMatthew G. Knepley X - The local solution vector 4055a5b23f4aSJose E. Roman X_t - The local solution time derivative vector, or NULL 4056a1cf66bbSMatthew G. Knepley */ 4057d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 4058d71ae5a4SJacob Faibussowitsch { 4059a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 4060a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 4061a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 4062a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 4063a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 4064a1cf66bbSMatthew G. Knepley Vec A; 4065a1cf66bbSMatthew G. Knepley DMField coordField; 4066a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 4067a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 4068a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 4069a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 4070e432b41dSStefano Zampini PetscBool hasJac, hasPrec, hasDyn, assembleJac, *isFE, hasFV = PETSC_FALSE; 4071a1cf66bbSMatthew G. Knepley const PetscInt *cells; 407206ad1575SMatthew G. Knepley PetscFormKey key; 40739b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 4074a1cf66bbSMatthew G. Knepley 4075a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 40769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 40779566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 40789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 40799566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 40809566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, NULL, 0, 0, &A)); 40819a2a23afSMatthew G. Knepley if (A) { 40829566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 40839566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dmAux, §ionAux)); 40849566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 4085a1cf66bbSMatthew G. Knepley } 4086a1cf66bbSMatthew G. Knepley /* Get flags */ 40879566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 40889566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 4089a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4090a1cf66bbSMatthew G. Knepley PetscObject disc; 4091a1cf66bbSMatthew G. Knepley PetscClassId id; 40929566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &disc)); 40939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 40949371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 40959371c9d4SSatish Balay isFE[fieldI] = PETSC_TRUE; 40969371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 40979371c9d4SSatish Balay hasFV = PETSC_TRUE; 40989371c9d4SSatish Balay isFE[fieldI] = PETSC_FALSE; 40999371c9d4SSatish Balay } 4100a1cf66bbSMatthew G. Knepley } 41019566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 41029566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 41039566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 4104a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 4105a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 41069566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); /* No allocated space for FV stuff, so ignore the zero entries */ 41079566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 41089566063dSJacob Faibussowitsch if (probAux) PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 4109a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 4110a1cf66bbSMatthew G. Knepley if (isFE[0]) { 4111a1cf66bbSMatthew G. Knepley PetscFE fe; 4112a1cf66bbSMatthew G. Knepley PetscQuadrature q; 4113a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 4114a1cf66bbSMatthew G. Knepley 41159566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 41169566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 41179566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL)); 41189566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 41199566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 4120a1cf66bbSMatthew G. Knepley blockSize = Nb * numQuadPoints; 4121a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 4122a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 4123a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 41249566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 4125a1cf66bbSMatthew G. Knepley } else { 4126a1cf66bbSMatthew G. Knepley chunkSize = numCells; 4127a1cf66bbSMatthew G. Knepley numChunks = 1; 4128a1cf66bbSMatthew G. Knepley } 4129a1cf66bbSMatthew G. Knepley /* Get work space */ 4130a1cf66bbSMatthew G. Knepley wsz = (((X ? 1 : 0) + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize; 41319566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work)); 41329566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(work, wsz)); 4133a1cf66bbSMatthew G. Knepley off = 0; 4134a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4135a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize * totDim, off += sz, work + off - sz) : NULL; 4136a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize * totDimAux, off += sz, work + off - sz) : NULL; 4137a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4138a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 4139a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize * totDim * totDim, off += sz, work + off - sz) : NULL; 414063a3b9bcSJacob Faibussowitsch PetscCheck(off == wsz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %" PetscInt_FMT " should be %" PetscInt_FMT, off, wsz); 4141a1cf66bbSMatthew G. Knepley /* Setup geometry */ 41429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 41439566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 41449566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 4145a1cf66bbSMatthew G. Knepley if (!qGeom) { 4146a1cf66bbSMatthew G. Knepley PetscFE fe; 4147a1cf66bbSMatthew G. Knepley 41489566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 41499566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 41509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 4151a1cf66bbSMatthew G. Knepley } 41529566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 4153a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 41549566063dSJacob Faibussowitsch if (assembleJac) PetscCall(MatZeroEntries(J)); 41559566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(JP)); 41566528b96dSMatthew G. Knepley key.label = NULL; 41576528b96dSMatthew G. Knepley key.value = 0; 415806ad1575SMatthew G. Knepley key.part = 0; 4159a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 4160a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 4161a1cf66bbSMatthew G. Knepley PetscInt c; 4162a1cf66bbSMatthew G. Knepley 4163a1cf66bbSMatthew G. Knepley /* Extract values */ 4164a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4165a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4166a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 4167a1cf66bbSMatthew G. Knepley PetscInt i; 4168a1cf66bbSMatthew G. Knepley 4169a1cf66bbSMatthew G. Knepley if (X) { 41709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 4171a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c * totDim + i] = x[i]; 41729566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 4173a1cf66bbSMatthew G. Knepley } 4174a1cf66bbSMatthew G. Knepley if (X_t) { 41759566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 4176a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c * totDim + i] = x_t[i]; 41779566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 4178a1cf66bbSMatthew G. Knepley } 4179a1cf66bbSMatthew G. Knepley if (dmAux) { 41809566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4181a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c * totDimAux + i] = x[i]; 41829566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x)); 4183a1cf66bbSMatthew G. Knepley } 4184a1cf66bbSMatthew G. Knepley } 4185a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 4186a1cf66bbSMatthew G. Knepley PetscFE fe; 41879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 4188a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 41896528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 41909566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat)); 41919566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP)); 41929566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD)); 4193a1cf66bbSMatthew G. Knepley } 4194a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 4195a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 4196a1cf66bbSMatthew G. Knepley PetscFV fv; 4197a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 4198a1cf66bbSMatthew G. Knepley 41999566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &foff)); 42009566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 42019566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 4202a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim * totDim) { 4203a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 4204a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 4205ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 4206ad540459SPierre Jolivet if (hasPrec) elemMatP[eOffset + i * totDim + i] = 1.0; 4207a1cf66bbSMatthew G. Knepley } 4208a1cf66bbSMatthew G. Knepley } 4209a1cf66bbSMatthew G. Knepley } 4210a1cf66bbSMatthew G. Knepley } 4211a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 42129371c9d4SSatish Balay if (hasDyn) { 42139371c9d4SSatish Balay for (c = 0; c < chunkSize * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 42149371c9d4SSatish Balay } 4215a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 4216a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 4217a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c + offCell] : c + offCell; 4218a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 42199566063dSJacob Faibussowitsch if (hasJac) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c - cStart) * totDim * totDim])); 42209566063dSJacob Faibussowitsch if (hasPrec) PetscCall(DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c - cStart) * totDim * totDim])); 4221a1cf66bbSMatthew G. Knepley } 42229566063dSJacob Faibussowitsch if (assembleJac) PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 42239566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c - cStart) * totDim * totDim], ADD_VALUES)); 4224a1cf66bbSMatthew G. Knepley } 4225a1cf66bbSMatthew G. Knepley } 4226a1cf66bbSMatthew G. Knepley /* Cleanup */ 42279566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 42289566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 42299566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 42309566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE)); 42319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, ((1 + (X_t ? 1 : 0) + (dmAux ? 1 : 0)) * totDim + ((hasJac ? 1 : 0) + (hasPrec ? 1 : 0) + (hasDyn ? 1 : 0)) * totDim * totDim) * chunkSize, MPIU_SCALAR, &work)); 4232a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 42339566063dSJacob Faibussowitsch /* PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx)); */ 4234a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 42359371c9d4SSatish Balay if (assembleJac) { 42369371c9d4SSatish Balay PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 42379371c9d4SSatish Balay PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 42389371c9d4SSatish Balay } 42399371c9d4SSatish Balay PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 42409371c9d4SSatish Balay PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 42419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 42423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4243a1cf66bbSMatthew G. Knepley } 42443e9753d6SMatthew G. Knepley 42453e9753d6SMatthew G. Knepley /******** FEM Assembly Function ********/ 42463e9753d6SMatthew G. Knepley 4247d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMConvertPlex_Internal(DM dm, DM *plex, PetscBool copy) 4248d71ae5a4SJacob Faibussowitsch { 42493e9753d6SMatthew G. Knepley PetscBool isPlex; 42503e9753d6SMatthew G. Knepley 42513e9753d6SMatthew G. Knepley PetscFunctionBegin; 42529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 42533e9753d6SMatthew G. Knepley if (isPlex) { 42543e9753d6SMatthew G. Knepley *plex = dm; 42559566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 42563e9753d6SMatthew G. Knepley } else { 42579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)dm, "dm_plex", (PetscObject *)plex)); 42583e9753d6SMatthew G. Knepley if (!*plex) { 42599566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, plex)); 42609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)dm, "dm_plex", (PetscObject)*plex)); 42611baa6e33SBarry Smith if (copy) PetscCall(DMCopyAuxiliaryVec(dm, *plex)); 42623e9753d6SMatthew G. Knepley } else { 42639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*plex)); 42643e9753d6SMatthew G. Knepley } 42653e9753d6SMatthew G. Knepley } 42663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42673e9753d6SMatthew G. Knepley } 42683e9753d6SMatthew G. Knepley 42693e9753d6SMatthew G. Knepley /*@ 42703e9753d6SMatthew G. Knepley DMPlexGetGeometryFVM - Return precomputed geometric data 42713e9753d6SMatthew G. Knepley 4272a1cb98faSBarry Smith Collective on dm 42733e9753d6SMatthew G. Knepley 42743e9753d6SMatthew G. Knepley Input Parameter: 4275a1cb98faSBarry Smith . dm - The `DM` 42763e9753d6SMatthew G. Knepley 42773e9753d6SMatthew G. Knepley Output Parameters: 42783e9753d6SMatthew G. Knepley + facegeom - The values precomputed from face geometry 42793e9753d6SMatthew G. Knepley . cellgeom - The values precomputed from cell geometry 42803e9753d6SMatthew G. Knepley - minRadius - The minimum radius over the mesh of an inscribed sphere in a cell 42813e9753d6SMatthew G. Knepley 42823e9753d6SMatthew G. Knepley Level: developer 42833e9753d6SMatthew G. Knepley 4284a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMTSSetRHSFunctionLocal()` 42853e9753d6SMatthew G. Knepley @*/ 4286d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGeometryFVM(DM dm, Vec *facegeom, Vec *cellgeom, PetscReal *minRadius) 4287d71ae5a4SJacob Faibussowitsch { 42883e9753d6SMatthew G. Knepley DM plex; 42893e9753d6SMatthew G. Knepley 42903e9753d6SMatthew G. Knepley PetscFunctionBegin; 42913e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42929566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 42939566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, NULL, cellgeom, facegeom, NULL)); 42949566063dSJacob Faibussowitsch if (minRadius) PetscCall(DMPlexGetMinRadius(plex, minRadius)); 42959566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 42963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42973e9753d6SMatthew G. Knepley } 42983e9753d6SMatthew G. Knepley 42993e9753d6SMatthew G. Knepley /*@ 43003e9753d6SMatthew G. Knepley DMPlexGetGradientDM - Return gradient data layout 43013e9753d6SMatthew G. Knepley 4302a1cb98faSBarry Smith Collective on dm 43033e9753d6SMatthew G. Knepley 43043e9753d6SMatthew G. Knepley Input Parameters: 4305a1cb98faSBarry Smith + dm - The `DM` 43063e9753d6SMatthew G. Knepley - fv - The PetscFV 43073e9753d6SMatthew G. Knepley 43083e9753d6SMatthew G. Knepley Output Parameter: 43093e9753d6SMatthew G. Knepley . dmGrad - The layout for gradient values 43103e9753d6SMatthew G. Knepley 43113e9753d6SMatthew G. Knepley Level: developer 43123e9753d6SMatthew G. Knepley 4313a1cb98faSBarry Smith .seealso: [](chapter_unstructured), `DM`, `DMPLEX`, `DMPlexGetGeometryFVM()` 43143e9753d6SMatthew G. Knepley @*/ 4315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetGradientDM(DM dm, PetscFV fv, DM *dmGrad) 4316d71ae5a4SJacob Faibussowitsch { 43173e9753d6SMatthew G. Knepley DM plex; 43183e9753d6SMatthew G. Knepley PetscBool computeGradients; 43193e9753d6SMatthew G. Knepley 43203e9753d6SMatthew G. Knepley PetscFunctionBegin; 43213e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43223e9753d6SMatthew G. Knepley PetscValidHeaderSpecific(fv, PETSCFV_CLASSID, 2); 43233e9753d6SMatthew G. Knepley PetscValidPointer(dmGrad, 3); 43249566063dSJacob Faibussowitsch PetscCall(PetscFVGetComputeGradients(fv, &computeGradients)); 43259371c9d4SSatish Balay if (!computeGradients) { 43269371c9d4SSatish Balay *dmGrad = NULL; 43273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43289371c9d4SSatish Balay } 43299566063dSJacob Faibussowitsch PetscCall(DMConvertPlex_Internal(dm, &plex, PETSC_TRUE)); 43309566063dSJacob Faibussowitsch PetscCall(DMPlexGetDataFVM(plex, fv, NULL, NULL, dmGrad)); 43319566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 43323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43333e9753d6SMatthew G. Knepley } 43343e9753d6SMatthew G. Knepley 4335d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexComputeBdResidual_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF, DMField coordField, IS facetIS) 4336d71ae5a4SJacob Faibussowitsch { 43373e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 43383e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL; 43393e9753d6SMatthew G. Knepley DMEnclosureType encAux; 43403e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 43413e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 43423e9753d6SMatthew G. Knepley Vec locA = NULL; 43433e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemVec = NULL; 43443e9753d6SMatthew G. Knepley PetscInt totDim, totDimAux = 0; 43453e9753d6SMatthew G. Knepley 43463e9753d6SMatthew G. Knepley PetscFunctionBegin; 43479566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 43489566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 43499566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 43509566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 43519566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 43523e9753d6SMatthew G. Knepley if (locA) { 43533e9753d6SMatthew G. Knepley DM dmAux; 43543e9753d6SMatthew G. Knepley 43559566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 43569566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 43579566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 43589566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 43599566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 43609566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 43613e9753d6SMatthew G. Knepley } 43620c290148SMatthew G. Knepley { 43633e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 43643e9753d6SMatthew G. Knepley PetscInt maxDegree; 43653e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 43663e9753d6SMatthew G. Knepley IS pointIS; 43673e9753d6SMatthew G. Knepley const PetscInt *points; 43683e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 43693e9753d6SMatthew G. Knepley 43709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(key.label, key.value, &pointIS)); 43710c290148SMatthew G. Knepley if (!pointIS) goto end; /* No points with that id on this process */ 43723e9753d6SMatthew G. Knepley { 43733e9753d6SMatthew G. Knepley IS isectIS; 43743e9753d6SMatthew G. Knepley 43753e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 43769566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 43779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 43783e9753d6SMatthew G. Knepley pointIS = isectIS; 43793e9753d6SMatthew G. Knepley } 43809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 43819566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 43829566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim, &elemVec, locA ? numFaces * totDimAux : 0, &a)); 43839566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 438448a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 43853e9753d6SMatthew G. Knepley if (!qGeom) { 43863e9753d6SMatthew G. Knepley PetscFE fe; 43873e9753d6SMatthew G. Knepley 43889566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 43899566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 43909566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 43913e9753d6SMatthew G. Knepley } 43929566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 43939566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 43943e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 4395f15274beSMatthew Knepley const PetscInt point = points[face], *support; 43963e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 4397f15274beSMatthew Knepley PetscInt i; 43983e9753d6SMatthew G. Knepley 43999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 44009566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 44013e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 44029566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 44033e9753d6SMatthew G. Knepley if (locX_t) { 44049566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 44053e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 44069566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 44073e9753d6SMatthew G. Knepley } 44083e9753d6SMatthew G. Knepley if (locA) { 44093e9753d6SMatthew G. Knepley PetscInt subp; 44103e9753d6SMatthew G. Knepley 44119566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 44129566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 44133e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 44149566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 44153e9753d6SMatthew G. Knepley } 44163e9753d6SMatthew G. Knepley } 44179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numFaces * totDim)); 44183e9753d6SMatthew G. Knepley { 44193e9753d6SMatthew G. Knepley PetscFE fe; 44203e9753d6SMatthew G. Knepley PetscInt Nb; 44213e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 44223e9753d6SMatthew G. Knepley /* Conforming batches */ 44233e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 44243e9753d6SMatthew G. Knepley /* Remainder */ 44253e9753d6SMatthew G. Knepley PetscInt Nr, offset; 44263e9753d6SMatthew G. Knepley 44279566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, key.field, (PetscObject *)&fe)); 44289566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 44299566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 44303e9753d6SMatthew G. Knepley /* TODO: documentation is unclear about what is going on with these numbers: how should Nb / Nq factor in ? */ 44313e9753d6SMatthew G. Knepley blockSize = Nb; 44323e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 44339566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 44343e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 44353e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 44363e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 44373e9753d6SMatthew G. Knepley offset = numFaces - Nr; 44389566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 44399566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec)); 44409566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom)); 44419566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 44429566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdResidual(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, &elemVec[offset * totDim])); 44439566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 44443e9753d6SMatthew G. Knepley } 44453e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 44463e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 44473e9753d6SMatthew G. Knepley 44489566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(point, "BdResidual", totDim, &elemVec[face * totDim])); 44499566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 44509566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(plex, NULL, locF, support[0], &elemVec[face * totDim], ADD_ALL_VALUES)); 44513e9753d6SMatthew G. Knepley } 44529566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 44539566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 44549566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 44559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 44569566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemVec, a)); 44573e9753d6SMatthew G. Knepley } 44580c290148SMatthew G. Knepley end: 44599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 44609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 44613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44623e9753d6SMatthew G. Knepley } 44633e9753d6SMatthew G. Knepley 4464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidualSingle(DM dm, PetscReal t, PetscWeakForm wf, PetscFormKey key, Vec locX, Vec locX_t, Vec locF) 4465d71ae5a4SJacob Faibussowitsch { 44663e9753d6SMatthew G. Knepley DMField coordField; 44673e9753d6SMatthew G. Knepley DMLabel depthLabel; 44683e9753d6SMatthew G. Knepley IS facetIS; 44693e9753d6SMatthew G. Knepley PetscInt dim; 44703e9753d6SMatthew G. Knepley 44713e9753d6SMatthew G. Knepley PetscFunctionBegin; 44729566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44739566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 44759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 44769566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 44779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 44783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44793e9753d6SMatthew G. Knepley } 44803e9753d6SMatthew G. Knepley 4481d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdResidual_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4482d71ae5a4SJacob Faibussowitsch { 44833e9753d6SMatthew G. Knepley PetscDS prob; 44843e9753d6SMatthew G. Knepley PetscInt numBd, bd; 44853e9753d6SMatthew G. Knepley DMField coordField = NULL; 44863e9753d6SMatthew G. Knepley IS facetIS = NULL; 44873e9753d6SMatthew G. Knepley DMLabel depthLabel; 44883e9753d6SMatthew G. Knepley PetscInt dim; 44893e9753d6SMatthew G. Knepley 44903e9753d6SMatthew G. Knepley PetscFunctionBegin; 44919566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 44929566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 44939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 44949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 44959566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 44963e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 449745480ffeSMatthew G. Knepley PetscWeakForm wf; 44983e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 44993e9753d6SMatthew G. Knepley DMLabel label; 45003e9753d6SMatthew G. Knepley const PetscInt *values; 45010c290148SMatthew G. Knepley PetscInt field, numValues, v; 45023e9753d6SMatthew G. Knepley PetscObject obj; 45033e9753d6SMatthew G. Knepley PetscClassId id; 45040c290148SMatthew G. Knepley PetscFormKey key; 45053e9753d6SMatthew G. Knepley 45069566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &field, NULL, NULL, NULL, NULL, NULL)); 45073d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 45089566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, field, &obj)); 45099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 45103d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 45113e9753d6SMatthew G. Knepley if (!facetIS) { 45123e9753d6SMatthew G. Knepley DMLabel depthLabel; 45133e9753d6SMatthew G. Knepley PetscInt dim; 45143e9753d6SMatthew G. Knepley 45159566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 45169566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 45179566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 45183e9753d6SMatthew G. Knepley } 45199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 45200c290148SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 45210c290148SMatthew G. Knepley key.label = label; 45220c290148SMatthew G. Knepley key.value = values[v]; 45230c290148SMatthew G. Knepley key.field = field; 45240c290148SMatthew G. Knepley key.part = 0; 45259566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Single_Internal(dm, t, wf, key, locX, locX_t, locF, coordField, facetIS)); 45260c290148SMatthew G. Knepley } 45273e9753d6SMatthew G. Knepley } 45289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 45293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45303e9753d6SMatthew G. Knepley } 45313e9753d6SMatthew G. Knepley 4532d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4533d71ae5a4SJacob Faibussowitsch { 45343e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 45353e9753d6SMatthew G. Knepley const char *name = "Residual"; 45363e9753d6SMatthew G. Knepley DM dmAux = NULL; 45373e9753d6SMatthew G. Knepley DM dmGrad = NULL; 45383e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 45396528b96dSMatthew G. Knepley PetscDS ds = NULL; 45406528b96dSMatthew G. Knepley PetscDS dsAux = NULL; 45413e9753d6SMatthew G. Knepley PetscSection section = NULL; 45423e9753d6SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 45433e9753d6SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 45443e9753d6SMatthew G. Knepley PetscBool isImplicit = (locX_t || time == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 45453e9753d6SMatthew G. Knepley PetscFV fvm = NULL; 45463e9753d6SMatthew G. Knepley PetscFVCellGeom *cgeomFVM = NULL; 45473e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeomFVM = NULL; 45483e9753d6SMatthew G. Knepley DMField coordField = NULL; 45493e9753d6SMatthew G. Knepley Vec locA, cellGeometryFVM = NULL, faceGeometryFVM = NULL, grad, locGrad = NULL; 45503e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a, *uL, *uR; 45513e9753d6SMatthew G. Knepley IS chunkIS; 45523e9753d6SMatthew G. Knepley const PetscInt *cells; 45533e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 45543e9753d6SMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, faceChunkSize, chunk, fStart, fEnd; 45553e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 45563e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 45573e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 45583e9753d6SMatthew G. Knepley 45593e9753d6SMatthew G. Knepley PetscFunctionBegin; 45603ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 4561437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 45623ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 45639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 45643e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 45653e9753d6SMatthew G. Knepley /* TODO The FVM geometry is over-manipulated. Make the precalc functions return exactly what we need */ 45663e9753d6SMatthew G. Knepley /* FEM+FVM */ 45679566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 45683e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 45699566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 45709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 45719566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 45729566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 45739566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 45749566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &locA)); 45753e9753d6SMatthew G. Knepley if (locA) { 45763e9753d6SMatthew G. Knepley PetscInt subcell; 45779566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 45781059d808SMatthew G. Knepley PetscCall(DMGetEnclosurePoint(dmAux, dm, DM_ENC_UNKNOWN, cells ? cells[cStart] : cStart, &subcell)); 45799566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux, subcell, &dsAux)); 45809566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux, &totDimAux)); 45813e9753d6SMatthew G. Knepley } 45823e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 45833e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 45843e9753d6SMatthew G. Knepley PetscObject obj; 45853e9753d6SMatthew G. Knepley PetscClassId id; 45863e9753d6SMatthew G. Knepley PetscBool fimp; 45873e9753d6SMatthew G. Knepley 45889566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 45893e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 45909566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 45919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 4592ad540459SPierre Jolivet if (id == PETSCFE_CLASSID) useFEM = PETSC_TRUE; 45939371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 45949371c9d4SSatish Balay useFVM = PETSC_TRUE; 45959371c9d4SSatish Balay fvm = (PetscFV)obj; 45969371c9d4SSatish Balay } 45973e9753d6SMatthew G. Knepley } 45983e9753d6SMatthew G. Knepley if (useFEM) { 45999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 46009566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 46013e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 46029566063dSJacob Faibussowitsch PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &affineQuad)); 460348a46eb9SPierre Jolivet if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 46043e9753d6SMatthew G. Knepley } else { 46059566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 46063e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 46073e9753d6SMatthew G. Knepley PetscObject obj; 46083e9753d6SMatthew G. Knepley PetscClassId id; 46093e9753d6SMatthew G. Knepley PetscBool fimp; 46103e9753d6SMatthew G. Knepley 46119566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 46123e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 46139566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46153e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46163e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 46173e9753d6SMatthew G. Knepley 46189566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 46199566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 46209566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 46213e9753d6SMatthew G. Knepley } 46223e9753d6SMatthew G. Knepley } 46233e9753d6SMatthew G. Knepley } 46243e9753d6SMatthew G. Knepley } 46253e9753d6SMatthew G. Knepley if (useFVM) { 46269566063dSJacob Faibussowitsch PetscCall(DMPlexGetGeometryFVM(dm, &faceGeometryFVM, &cellGeometryFVM, NULL)); 46279566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(faceGeometryFVM, (const PetscScalar **)&fgeomFVM)); 46289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(cellGeometryFVM, (const PetscScalar **)&cgeomFVM)); 46293e9753d6SMatthew G. Knepley /* Reconstruct and limit cell gradients */ 46309566063dSJacob Faibussowitsch PetscCall(DMPlexGetGradientDM(dm, fvm, &dmGrad)); 46313e9753d6SMatthew G. Knepley if (dmGrad) { 46329566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 46339566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dmGrad, &grad)); 46349566063dSJacob Faibussowitsch PetscCall(DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad)); 46353e9753d6SMatthew G. Knepley /* Communicate gradient values */ 46369566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dmGrad, &locGrad)); 46379566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad)); 46389566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad)); 46399566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dmGrad, &grad)); 46403e9753d6SMatthew G. Knepley } 46413e9753d6SMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 46429566063dSJacob Faibussowitsch PetscCall(DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, time, faceGeometryFVM, cellGeometryFVM, locGrad)); 46433e9753d6SMatthew G. Knepley } 46443e9753d6SMatthew G. Knepley /* Loop over chunks */ 46459566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISCreate(PETSC_COMM_SELF, &chunkIS)); 46463e9753d6SMatthew G. Knepley numCells = cEnd - cStart; 46473e9753d6SMatthew G. Knepley numChunks = 1; 46483e9753d6SMatthew G. Knepley cellChunkSize = numCells / numChunks; 46493e9753d6SMatthew G. Knepley faceChunkSize = (fEnd - fStart) / numChunks; 46503e9753d6SMatthew G. Knepley numChunks = PetscMin(1, numCells); 46513e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 46523e9753d6SMatthew G. Knepley PetscScalar *elemVec, *fluxL, *fluxR; 46533e9753d6SMatthew G. Knepley PetscReal *vol; 46543e9753d6SMatthew G. Knepley PetscFVFaceGeom *fgeom; 46553e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 46563e9753d6SMatthew G. Knepley PetscInt fS = fStart + chunk * faceChunkSize, fE = PetscMin(fS + faceChunkSize, fEnd), numFaces = 0, face; 46573e9753d6SMatthew G. Knepley 46583e9753d6SMatthew G. Knepley /* Extract field coefficients */ 46593e9753d6SMatthew G. Knepley if (useFEM) { 46609566063dSJacob Faibussowitsch PetscCall(ISGetPointSubrange(chunkIS, cS, cE, cells)); 46619566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 46629566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 46639566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemVec, numCells * totDim)); 46643e9753d6SMatthew G. Knepley } 46653e9753d6SMatthew G. Knepley if (useFVM) { 46669566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 46679566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 46689566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 46699566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 46709566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxL, numFaces * totDim)); 46719566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(fluxR, numFaces * totDim)); 46723e9753d6SMatthew G. Knepley } 46733e9753d6SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 46743e9753d6SMatthew G. Knepley /* Loop over fields */ 46753e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 46763e9753d6SMatthew G. Knepley PetscObject obj; 46773e9753d6SMatthew G. Knepley PetscClassId id; 46783e9753d6SMatthew G. Knepley PetscBool fimp; 46793e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 46803e9753d6SMatthew G. Knepley 46816528b96dSMatthew G. Knepley key.field = f; 46829566063dSJacob Faibussowitsch PetscCall(PetscDSGetImplicit(ds, f, &fimp)); 46833e9753d6SMatthew G. Knepley if (isImplicit != fimp) continue; 46849566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 46859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 46863e9753d6SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46873e9753d6SMatthew G. Knepley PetscFE fe = (PetscFE)obj; 46883e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 46893e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 46903e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 46913e9753d6SMatthew G. Knepley PetscInt Nq, Nb; 46923e9753d6SMatthew G. Knepley 46939566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 46949566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 46959566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 46963e9753d6SMatthew G. Knepley blockSize = Nb; 46973e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 46989566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 46993e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 47003e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 47013e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 47023e9753d6SMatthew G. Knepley offset = numCells - Nr; 47033e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 47043e9753d6SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 47059566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Ne, chunkGeom, u, u_t, dsAux, a, t, elemVec)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &chunkGeom)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateResidual(ds, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux, &a[offset * totDimAux], t, &elemVec[offset * totDim])); 47099566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &chunkGeom)); 47103e9753d6SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 47113e9753d6SMatthew G. Knepley PetscFV fv = (PetscFV)obj; 47123e9753d6SMatthew G. Knepley 47133e9753d6SMatthew G. Knepley Ne = numFaces; 47143e9753d6SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 47153e9753d6SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 47169566063dSJacob Faibussowitsch PetscCall(PetscFVIntegrateRHSFunction(fv, ds, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR)); 471763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, f); 47183e9753d6SMatthew G. Knepley } 47193e9753d6SMatthew G. Knepley /* Loop over domain */ 47203e9753d6SMatthew G. Knepley if (useFEM) { 47213e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 47223e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 47233e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 47243e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 47253e9753d6SMatthew G. Knepley 47269566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 47273e9753d6SMatthew G. Knepley if (ghostLabel) { 47283e9753d6SMatthew G. Knepley PetscInt ghostVal; 47293e9753d6SMatthew G. Knepley 47309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 47313e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 47323e9753d6SMatthew G. Knepley } 47339566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 47343e9753d6SMatthew G. Knepley } 47353e9753d6SMatthew G. Knepley } 47363e9753d6SMatthew G. Knepley if (useFVM) { 47373e9753d6SMatthew G. Knepley PetscScalar *fa; 47383e9753d6SMatthew G. Knepley PetscInt iface; 47393e9753d6SMatthew G. Knepley 47409566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 47413e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47423e9753d6SMatthew G. Knepley PetscFV fv; 47433e9753d6SMatthew G. Knepley PetscObject obj; 47443e9753d6SMatthew G. Knepley PetscClassId id; 47453e9753d6SMatthew G. Knepley PetscInt foff, pdim; 47463e9753d6SMatthew G. Knepley 47479566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47489566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(ds, f, &foff)); 47499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47503e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 47513e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 47529566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 47533e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 47543e9753d6SMatthew G. Knepley for (face = fS, iface = 0; face < fE; ++face) { 47553e9753d6SMatthew G. Knepley const PetscInt *scells; 47563e9753d6SMatthew G. Knepley PetscScalar *fL = NULL, *fR = NULL; 47573e9753d6SMatthew G. Knepley PetscInt ghost, d, nsupp, nchild; 47583e9753d6SMatthew G. Knepley 47599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, face, &ghost)); 47609566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &nsupp)); 47619566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, face, &nchild, NULL)); 47623e9753d6SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 47639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &scells)); 47649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[0], &ghost)); 47659566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[0], f, fa, &fL)); 47669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, scells[1], &ghost)); 47679566063dSJacob Faibussowitsch if (ghost <= 0) PetscCall(DMPlexPointLocalFieldRef(dm, scells[1], f, fa, &fR)); 47683e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) { 47693e9753d6SMatthew G. Knepley if (fL) fL[d] -= fluxL[iface * totDim + foff + d]; 47703e9753d6SMatthew G. Knepley if (fR) fR[d] += fluxR[iface * totDim + foff + d]; 47713e9753d6SMatthew G. Knepley } 47723e9753d6SMatthew G. Knepley ++iface; 47733e9753d6SMatthew G. Knepley } 47743e9753d6SMatthew G. Knepley } 47759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 47763e9753d6SMatthew G. Knepley } 47773e9753d6SMatthew G. Knepley /* Handle time derivative */ 47783e9753d6SMatthew G. Knepley if (locX_t) { 47793e9753d6SMatthew G. Knepley PetscScalar *x_t, *fa; 47803e9753d6SMatthew G. Knepley 47819566063dSJacob Faibussowitsch PetscCall(VecGetArray(locF, &fa)); 47829566063dSJacob Faibussowitsch PetscCall(VecGetArray(locX_t, &x_t)); 47833e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 47843e9753d6SMatthew G. Knepley PetscFV fv; 47853e9753d6SMatthew G. Knepley PetscObject obj; 47863e9753d6SMatthew G. Knepley PetscClassId id; 47873e9753d6SMatthew G. Knepley PetscInt pdim, d; 47883e9753d6SMatthew G. Knepley 47899566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, &obj)); 47909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 47913e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 47923e9753d6SMatthew G. Knepley fv = (PetscFV)obj; 47939566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &pdim)); 47943e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 47953e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 47963e9753d6SMatthew G. Knepley PetscScalar *u_t, *r; 47973e9753d6SMatthew G. Knepley 47983e9753d6SMatthew G. Knepley if (ghostLabel) { 47993e9753d6SMatthew G. Knepley PetscInt ghostVal; 48003e9753d6SMatthew G. Knepley 48019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 48023e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 48033e9753d6SMatthew G. Knepley } 48049566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t)); 48059566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm, cell, f, fa, &r)); 48063e9753d6SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 48073e9753d6SMatthew G. Knepley } 48083e9753d6SMatthew G. Knepley } 48099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locX_t, &x_t)); 48109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(locF, &fa)); 48113e9753d6SMatthew G. Knepley } 48123e9753d6SMatthew G. Knepley if (useFEM) { 48139566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a)); 48149566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 48153e9753d6SMatthew G. Knepley } 48163e9753d6SMatthew G. Knepley if (useFVM) { 48179566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceFields(dm, fS, fE, locX, locX_t, faceGeometryFVM, cellGeometryFVM, locGrad, &numFaces, &uL, &uR)); 48189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreFaceGeometry(dm, fS, fE, faceGeometryFVM, cellGeometryFVM, &numFaces, &fgeom, &vol)); 48199566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxL)); 48209566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numFaces * totDim, MPIU_SCALAR, &fluxR)); 48219566063dSJacob Faibussowitsch if (dmGrad) PetscCall(DMRestoreLocalVector(dmGrad, &locGrad)); 48223e9753d6SMatthew G. Knepley } 48233e9753d6SMatthew G. Knepley } 48249566063dSJacob Faibussowitsch if (useFEM) PetscCall(ISDestroy(&chunkIS)); 48259566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 48263e9753d6SMatthew G. Knepley 48273e9753d6SMatthew G. Knepley if (useFEM) { 48289566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdResidual_Internal(dm, locX, locX_t, t, locF, user)); 48293e9753d6SMatthew G. Knepley 48303e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 48319566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 48329566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 48333e9753d6SMatthew G. Knepley } else { 48343e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 48359566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 48369566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&quads[f])); 48373e9753d6SMatthew G. Knepley } 48389566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 48393e9753d6SMatthew G. Knepley } 48403e9753d6SMatthew G. Knepley } 48413e9753d6SMatthew G. Knepley 48423e9753d6SMatthew G. Knepley /* FEM */ 48433e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 48443e9753d6SMatthew G. Knepley /* 2: Get geometric data */ 48453e9753d6SMatthew G. Knepley /* 3: Handle boundary values */ 48463e9753d6SMatthew G. Knepley /* 4: Loop over domain */ 48473e9753d6SMatthew G. Knepley /* Extract coefficients */ 48483e9753d6SMatthew G. Knepley /* Loop over fields */ 48493e9753d6SMatthew G. Knepley /* Set tiling for FE*/ 48503e9753d6SMatthew G. Knepley /* Integrate FE residual to get elemVec */ 48513e9753d6SMatthew G. Knepley /* Loop over subdomain */ 48523e9753d6SMatthew G. Knepley /* Loop over quad points */ 48533e9753d6SMatthew G. Knepley /* Transform coords to real space */ 48543e9753d6SMatthew G. Knepley /* Evaluate field and aux fields at point */ 48553e9753d6SMatthew G. Knepley /* Evaluate residual at point */ 48563e9753d6SMatthew G. Knepley /* Transform residual to real space */ 48573e9753d6SMatthew G. Knepley /* Add residual to elemVec */ 48583e9753d6SMatthew G. Knepley /* Loop over domain */ 48593e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 48603e9753d6SMatthew G. Knepley 48613e9753d6SMatthew G. Knepley /* FVM */ 48623e9753d6SMatthew G. Knepley /* Get geometric data */ 48633e9753d6SMatthew G. Knepley /* If using gradients */ 48643e9753d6SMatthew G. Knepley /* Compute gradient data */ 48653e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48663e9753d6SMatthew G. Knepley /* Count computational faces */ 48673e9753d6SMatthew G. Knepley /* Reconstruct cell gradient */ 48683e9753d6SMatthew G. Knepley /* Loop over domain cells */ 48693e9753d6SMatthew G. Knepley /* Limit cell gradients */ 48703e9753d6SMatthew G. Knepley /* Handle boundary values */ 48713e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48723e9753d6SMatthew G. Knepley /* Read out field, centroid, normal, volume for each side of face */ 48733e9753d6SMatthew G. Knepley /* Riemann solve over faces */ 48743e9753d6SMatthew G. Knepley /* Loop over domain faces */ 48753e9753d6SMatthew G. Knepley /* Accumulate fluxes to cells */ 48763e9753d6SMatthew G. Knepley /* TODO Change printFEM to printDisc here */ 48773e9753d6SMatthew G. Knepley if (mesh->printFEM) { 48783e9753d6SMatthew G. Knepley Vec locFbc; 48793e9753d6SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 48803e9753d6SMatthew G. Knepley PetscScalar *zeroes; 48813e9753d6SMatthew G. Knepley 48829566063dSJacob Faibussowitsch PetscCall(VecDuplicate(locF, &locFbc)); 48839566063dSJacob Faibussowitsch PetscCall(VecCopy(locF, locFbc)); 48849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 48859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 48869566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(maxDof, &zeroes)); 488748a46eb9SPierre Jolivet for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 48889566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 48899566063dSJacob Faibussowitsch PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 48909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&locFbc)); 48913e9753d6SMatthew G. Knepley } 48929566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 48933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48943e9753d6SMatthew G. Knepley } 48953e9753d6SMatthew G. Knepley 48966528b96dSMatthew G. Knepley /* 48976528b96dSMatthew G. Knepley 1) Allow multiple kernels for BdResidual for hybrid DS 48986528b96dSMatthew G. Knepley 48996528b96dSMatthew G. Knepley DONE 2) Get out dsAux for either side at the same time as cohesive cell dsAux 49006528b96dSMatthew G. Knepley 49016528b96dSMatthew G. Knepley DONE 3) Change DMGetCellFields() to get different aux data a[] for each side 49026528b96dSMatthew G. Knepley - I think I just need to replace a[] with the closure from each face 49036528b96dSMatthew G. Knepley 49046528b96dSMatthew G. Knepley 4) Run both kernels for each non-hybrid field with correct dsAux, and then hybrid field as before 49056528b96dSMatthew G. Knepley */ 4906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeResidual_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal time, Vec locX, Vec locX_t, PetscReal t, Vec locF, void *user) 4907d71ae5a4SJacob Faibussowitsch { 49083e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 49093e9753d6SMatthew G. Knepley const char *name = "Hybrid Residual"; 491004c51a94SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 49113e9753d6SMatthew G. Knepley DMLabel ghostLabel = NULL; 49126528b96dSMatthew G. Knepley PetscDS ds = NULL; 49136528b96dSMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 491404c51a94SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 4915b2ab40e6SMatthew G. Knepley PetscScalar *a[3] = {NULL, NULL, NULL}; 49163e9753d6SMatthew G. Knepley PetscSection section = NULL; 49173e9753d6SMatthew G. Knepley DMField coordField = NULL; 4918b2ab40e6SMatthew G. Knepley PetscScalar *u = NULL, *u_t; 49193e9753d6SMatthew G. Knepley PetscScalar *elemVec; 49203e9753d6SMatthew G. Knepley IS chunkIS; 49213e9753d6SMatthew G. Knepley const PetscInt *cells; 49223e9753d6SMatthew G. Knepley PetscInt *faces; 49233e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 49246528b96dSMatthew G. Knepley PetscInt Nf, f, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 49253e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 49263e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 49273e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 49283e9753d6SMatthew G. Knepley 49293e9753d6SMatthew G. Knepley PetscFunctionBegin; 49303ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 4931437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 4932437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 49333ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 49345fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 49355fedec97SMatthew G. Knepley const char *name; 49369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 493763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 49385fedec97SMatthew G. Knepley } 49399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 49403e9753d6SMatthew G. Knepley /* TODO The places where we have to use isFE are probably the member functions for the PetscDisc class */ 49413e9753d6SMatthew G. Knepley /* FEM */ 49423e9753d6SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 49439566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 49449566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 49451059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 49469566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 49479566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 49489566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 494904c51a94SMatthew G. Knepley if (locA[2]) { 49501059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 49511059d808SMatthew G. Knepley 49529566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 49531059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 49549566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 49556528b96dSMatthew G. Knepley { 49566528b96dSMatthew G. Knepley const PetscInt *cone; 49576528b96dSMatthew G. Knepley PetscInt c; 49586528b96dSMatthew G. Knepley 49591059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 49606528b96dSMatthew G. Knepley for (c = 0; c < 2; ++c) { 49616528b96dSMatthew G. Knepley const PetscInt *support; 49626528b96dSMatthew G. Knepley PetscInt ssize, s; 49636528b96dSMatthew G. Knepley 49649566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 49659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 49661059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 49671059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 49681059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 49691059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 49709566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 4971c75bfeddSPierre Jolivet PetscCheck(locA[c], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must have auxiliary vector for (%p, %" PetscInt_FMT ", %" PetscInt_FMT ")", (void *)key[c].label, key[c].value, key[c].part); 49729566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 4973ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 49749566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 49759566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 49766528b96dSMatthew G. Knepley } 49776528b96dSMatthew G. Knepley } 49783e9753d6SMatthew G. Knepley } 49793e9753d6SMatthew G. Knepley /* 2: Setup geometric data */ 49809566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 49819566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 49823e9753d6SMatthew G. Knepley if (maxDegree > 1) { 49839566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 49843e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 49853e9753d6SMatthew G. Knepley PetscFE fe; 49863e9753d6SMatthew G. Knepley 49879566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 49883e9753d6SMatthew G. Knepley if (fe) { 49899566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 49909566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 49913e9753d6SMatthew G. Knepley } 49923e9753d6SMatthew G. Knepley } 49933e9753d6SMatthew G. Knepley } 49943e9753d6SMatthew G. Knepley /* Loop over chunks */ 49953e9753d6SMatthew G. Knepley cellChunkSize = numCells; 49963e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 4997a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1 * cellChunkSize, &faces)); 4998a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 49993e9753d6SMatthew G. Knepley /* Extract field coefficients */ 50003e9753d6SMatthew G. Knepley /* NOTE This needs the end cap faces to have identical orientations */ 50019566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 50029566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 50039566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, cellChunkSize * totDim, MPIU_SCALAR, &elemVec)); 50043e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 50053e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 50063e9753d6SMatthew G. Knepley 50079566063dSJacob Faibussowitsch PetscCall(PetscMemzero(elemVec, cellChunkSize * totDim * sizeof(PetscScalar))); 50083e9753d6SMatthew G. Knepley /* Get faces */ 50093e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 50103e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 50113e9753d6SMatthew G. Knepley const PetscInt *cone; 50129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 5013a4158a15SMatthew G. Knepley faces[0 * cellChunkSize + (c - cS)] = cone[0]; 5014a4158a15SMatthew G. Knepley /*faces[1*cellChunkSize+(c-cS)] = cone[1];*/ 50153e9753d6SMatthew G. Knepley } 5016a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER)); 50173e9753d6SMatthew G. Knepley /* Get geometric data */ 50183e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50199566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 50209566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 50213e9753d6SMatthew G. Knepley } else { 50223e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50239566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 50243e9753d6SMatthew G. Knepley } 50253e9753d6SMatthew G. Knepley } 50263e9753d6SMatthew G. Knepley /* Loop over fields */ 50273e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50283e9753d6SMatthew G. Knepley PetscFE fe; 50293e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 5030148442b3SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 50313e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 50323e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 50335fedec97SMatthew G. Knepley PetscBool isCohesiveField; 50343e9753d6SMatthew G. Knepley 50359566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 50363e9753d6SMatthew G. Knepley if (!fe) continue; 50379566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 50389566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 50399566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 50403e9753d6SMatthew G. Knepley blockSize = Nb; 50413e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 50429566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 50433e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 50443e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 50453e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 50463e9753d6SMatthew G. Knepley offset = numCells - Nr; 50479566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 50489566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom)); 50499566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 50505fedec97SMatthew G. Knepley chunkGeom->isCohesive = remGeom->isCohesive = PETSC_TRUE; 50516528b96dSMatthew G. Knepley key[0].field = f; 50526528b96dSMatthew G. Knepley key[1].field = f; 50535fedec97SMatthew G. Knepley key[2].field = f; 50549566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, elemVec)); 50559566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, &elemVec[offset * totDim])); 50569566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, elemVec)); 50579566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, &elemVec[offset * totDim])); 50589566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, elemVec)); 50599566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridResidual(ds, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, &elemVec[offset * totDim])); 50609566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 50619566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 50623e9753d6SMatthew G. Knepley } 50633e9753d6SMatthew G. Knepley /* Add elemVec to locX */ 50643e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 50653e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 50663e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 50673e9753d6SMatthew G. Knepley 50689566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellVector(cell, name, totDim, &elemVec[cind * totDim])); 50693e9753d6SMatthew G. Knepley if (ghostLabel) { 50703e9753d6SMatthew G. Knepley PetscInt ghostVal; 50713e9753d6SMatthew G. Knepley 50729566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(ghostLabel, cell, &ghostVal)); 50733e9753d6SMatthew G. Knepley if (ghostVal > 0) continue; 50743e9753d6SMatthew G. Knepley } 50759566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind * totDim], ADD_ALL_VALUES)); 50763e9753d6SMatthew G. Knepley } 50773e9753d6SMatthew G. Knepley } 50789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 50799566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 50809566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, numCells * totDim, MPIU_SCALAR, &elemVec)); 50819566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 50829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 50839566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 50843e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 50859566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 50869566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 50873e9753d6SMatthew G. Knepley } else { 50883e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 50899566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 50909566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 50913e9753d6SMatthew G. Knepley } 50929566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 50933e9753d6SMatthew G. Knepley } 509485cc2951SMatthew G. Knepley if (mesh->printFEM) { 509585cc2951SMatthew G. Knepley Vec locFbc; 509685cc2951SMatthew G. Knepley PetscInt pStart, pEnd, p, maxDof; 509785cc2951SMatthew G. Knepley PetscScalar *zeroes; 509885cc2951SMatthew G. Knepley 509985cc2951SMatthew G. Knepley PetscCall(VecDuplicate(locF, &locFbc)); 510085cc2951SMatthew G. Knepley PetscCall(VecCopy(locF, locFbc)); 510185cc2951SMatthew G. Knepley PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 510285cc2951SMatthew G. Knepley PetscCall(PetscSectionGetMaxDof(section, &maxDof)); 510385cc2951SMatthew G. Knepley PetscCall(PetscCalloc1(maxDof, &zeroes)); 510485cc2951SMatthew G. Knepley for (p = pStart; p < pEnd; p++) PetscCall(VecSetValuesSection(locFbc, section, p, zeroes, INSERT_BC_VALUES)); 510585cc2951SMatthew G. Knepley PetscCall(PetscFree(zeroes)); 510685cc2951SMatthew G. Knepley PetscCall(DMPrintLocalVec(dm, name, mesh->printTol, locFbc)); 510785cc2951SMatthew G. Knepley PetscCall(VecDestroy(&locFbc)); 510885cc2951SMatthew G. Knepley } 51099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_ResidualFEM, dm, 0, 0, 0)); 51103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51113e9753d6SMatthew G. Knepley } 51123e9753d6SMatthew G. Knepley 5113d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Single_Internal(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt fieldI, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP, DMField coordField, IS facetIS) 5114d71ae5a4SJacob Faibussowitsch { 51153e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 51163e9753d6SMatthew G. Knepley DM plex = NULL, plexA = NULL, tdm; 51173e9753d6SMatthew G. Knepley DMEnclosureType encAux; 51183e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 51193e9753d6SMatthew G. Knepley PetscSection section, sectionAux = NULL; 5120e432b41dSStefano Zampini PetscSection globalSection; 51213e9753d6SMatthew G. Knepley Vec locA = NULL, tv; 51223e9753d6SMatthew G. Knepley PetscScalar *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL; 51233e9753d6SMatthew G. Knepley PetscInt v; 51243e9753d6SMatthew G. Knepley PetscInt Nf, totDim, totDimAux = 0; 5125e432b41dSStefano Zampini PetscBool transform; 51263e9753d6SMatthew G. Knepley 51273e9753d6SMatthew G. Knepley PetscFunctionBegin; 51289566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 51299566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 51309566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 51319566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 51329566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 51339566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 51349566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 51359566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 51369566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, label, values[0], 0, &locA)); 51373e9753d6SMatthew G. Knepley if (locA) { 51383e9753d6SMatthew G. Knepley DM dmAux; 51393e9753d6SMatthew G. Knepley 51409566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA, &dmAux)); 51419566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 51429566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexA)); 51439566063dSJacob Faibussowitsch PetscCall(DMGetDS(plexA, &probAux)); 51449566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 51459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexA, §ionAux)); 51463e9753d6SMatthew G. Knepley } 51473e9753d6SMatthew G. Knepley 51489566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 51493e9753d6SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 51503e9753d6SMatthew G. Knepley PetscFEGeom *fgeom; 51513e9753d6SMatthew G. Knepley PetscInt maxDegree; 51523e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 51533e9753d6SMatthew G. Knepley IS pointIS; 51543e9753d6SMatthew G. Knepley const PetscInt *points; 515506ad1575SMatthew G. Knepley PetscFormKey key; 51563e9753d6SMatthew G. Knepley PetscInt numFaces, face, Nq; 51573e9753d6SMatthew G. Knepley 515845480ffeSMatthew G. Knepley key.label = label; 515945480ffeSMatthew G. Knepley key.value = values[v]; 516006ad1575SMatthew G. Knepley key.part = 0; 51619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 51623e9753d6SMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 51633e9753d6SMatthew G. Knepley { 51643e9753d6SMatthew G. Knepley IS isectIS; 51653e9753d6SMatthew G. Knepley 51663e9753d6SMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a prior if one is a superset of the other */ 51679566063dSJacob Faibussowitsch PetscCall(ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS)); 51689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 51693e9753d6SMatthew G. Knepley pointIS = isectIS; 51703e9753d6SMatthew G. Knepley } 51719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numFaces)); 51729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 51739566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(numFaces * totDim, &u, locX_t ? numFaces * totDim : 0, &u_t, numFaces * totDim * totDim, &elemMat, locA ? numFaces * totDimAux : 0, &a)); 51749566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree)); 517548a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom)); 51763e9753d6SMatthew G. Knepley if (!qGeom) { 51773e9753d6SMatthew G. Knepley PetscFE fe; 51783e9753d6SMatthew G. Knepley 51799566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 51809566063dSJacob Faibussowitsch PetscCall(PetscFEGetFaceQuadrature(fe, &qGeom)); 51819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 51823e9753d6SMatthew G. Knepley } 51839566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 51849566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 51853e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 5186f15274beSMatthew Knepley const PetscInt point = points[face], *support; 51873e9753d6SMatthew G. Knepley PetscScalar *x = NULL; 5188f15274beSMatthew Knepley PetscInt i; 51893e9753d6SMatthew G. Knepley 51909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 51919566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x)); 51923e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face * totDim + i] = x[i]; 51939566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x)); 51943e9753d6SMatthew G. Knepley if (locX_t) { 51959566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, locX_t, support[0], NULL, &x)); 51963e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[face * totDim + i] = x[i]; 51979566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, locX_t, support[0], NULL, &x)); 51983e9753d6SMatthew G. Knepley } 51993e9753d6SMatthew G. Knepley if (locA) { 52003e9753d6SMatthew G. Knepley PetscInt subp; 52019566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(plexA, dm, encAux, support[0], &subp)); 52029566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x)); 52033e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[face * totDimAux + i] = x[i]; 52049566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x)); 52053e9753d6SMatthew G. Knepley } 52063e9753d6SMatthew G. Knepley } 52079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numFaces * totDim * totDim)); 52083e9753d6SMatthew G. Knepley { 52093e9753d6SMatthew G. Knepley PetscFE fe; 52103e9753d6SMatthew G. Knepley PetscInt Nb; 52113e9753d6SMatthew G. Knepley /* Conforming batches */ 52123e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 52133e9753d6SMatthew G. Knepley /* Remainder */ 52143e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 52153e9753d6SMatthew G. Knepley PetscInt fieldJ, Nr, offset; 52163e9753d6SMatthew G. Knepley 52179566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 52189566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 52199566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 52203e9753d6SMatthew G. Knepley blockSize = Nb; 52213e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 52229566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 52233e9753d6SMatthew G. Knepley numChunks = numFaces / (numBatches * batchSize); 52243e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 52253e9753d6SMatthew G. Knepley Nr = numFaces % (numBatches * batchSize); 52263e9753d6SMatthew G. Knepley offset = numFaces - Nr; 52279566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, 0, offset, &chunkGeom)); 52283e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 522945480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 52309566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 52313e9753d6SMatthew G. Knepley } 52329566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom)); 52333e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 523445480ffeSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 52359566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateBdJacobian(prob, wf, key, Nr, chunkGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, a ? &a[offset * totDimAux] : NULL, t, X_tShift, &elemMat[offset * totDim * totDim])); 52363e9753d6SMatthew G. Knepley } 52379566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom)); 52383e9753d6SMatthew G. Knepley } 52393e9753d6SMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 52403e9753d6SMatthew G. Knepley const PetscInt point = points[face], *support; 52413e9753d6SMatthew G. Knepley 52423e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 52439566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(plex, point, &support)); 52449566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, support[0], PETSC_TRUE, totDim, &elemMat[face * totDim * totDim])); 52459566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(point, "BdJacobian", totDim, totDim, &elemMat[face * totDim * totDim])); 52469566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, support[0], &elemMat[face * totDim * totDim], ADD_VALUES)); 52473e9753d6SMatthew G. Knepley } 52489566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom)); 52499566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 52509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 52519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 52529566063dSJacob Faibussowitsch PetscCall(PetscFree4(u, u_t, elemMat, a)); 52533e9753d6SMatthew G. Knepley } 52549566063dSJacob Faibussowitsch if (plex) PetscCall(DMDestroy(&plex)); 52559566063dSJacob Faibussowitsch if (plexA) PetscCall(DMDestroy(&plexA)); 52563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52573e9753d6SMatthew G. Knepley } 52583e9753d6SMatthew G. Knepley 5259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobianSingle(DM dm, PetscReal t, PetscWeakForm wf, DMLabel label, PetscInt numValues, const PetscInt values[], PetscInt field, Vec locX, Vec locX_t, PetscReal X_tShift, Mat Jac, Mat JacP) 5260d71ae5a4SJacob Faibussowitsch { 52613e9753d6SMatthew G. Knepley DMField coordField; 52623e9753d6SMatthew G. Knepley DMLabel depthLabel; 52633e9753d6SMatthew G. Knepley IS facetIS; 52643e9753d6SMatthew G. Knepley PetscInt dim; 52653e9753d6SMatthew G. Knepley 52663e9753d6SMatthew G. Knepley PetscFunctionBegin; 52679566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 52689566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 52699566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 52709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52719566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, field, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 52729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 52733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52743e9753d6SMatthew G. Knepley } 52753e9753d6SMatthew G. Knepley 5276d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeBdJacobian_Internal(DM dm, Vec locX, Vec locX_t, PetscReal t, PetscReal X_tShift, Mat Jac, Mat JacP, void *user) 5277d71ae5a4SJacob Faibussowitsch { 52783e9753d6SMatthew G. Knepley PetscDS prob; 52793e9753d6SMatthew G. Knepley PetscInt dim, numBd, bd; 52803e9753d6SMatthew G. Knepley DMLabel depthLabel; 52813e9753d6SMatthew G. Knepley DMField coordField = NULL; 52823e9753d6SMatthew G. Knepley IS facetIS; 52833e9753d6SMatthew G. Knepley 52843e9753d6SMatthew G. Knepley PetscFunctionBegin; 52859566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 52869566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 52879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 52889566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(depthLabel, dim - 1, &facetIS)); 52899566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(prob, &numBd)); 52909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 52913e9753d6SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 529245480ffeSMatthew G. Knepley PetscWeakForm wf; 52933e9753d6SMatthew G. Knepley DMBoundaryConditionType type; 52943e9753d6SMatthew G. Knepley DMLabel label; 52953e9753d6SMatthew G. Knepley const PetscInt *values; 52963e9753d6SMatthew G. Knepley PetscInt fieldI, numValues; 52973e9753d6SMatthew G. Knepley PetscObject obj; 52983e9753d6SMatthew G. Knepley PetscClassId id; 52993e9753d6SMatthew G. Knepley 53009566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(prob, bd, &wf, &type, NULL, &label, &numValues, &values, &fieldI, NULL, NULL, NULL, NULL, NULL)); 53013d3e5d66SMatthew G. Knepley if (type & DM_BC_ESSENTIAL) continue; 53029566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, &obj)); 53039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 53043d3e5d66SMatthew G. Knepley if (id != PETSCFE_CLASSID) continue; 53059566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Single_Internal(dm, t, wf, label, numValues, values, fieldI, locX, locX_t, X_tShift, Jac, JacP, coordField, facetIS)); 53063e9753d6SMatthew G. Knepley } 53079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 53083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53093e9753d6SMatthew G. Knepley } 53103e9753d6SMatthew G. Knepley 5311d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *user) 5312d71ae5a4SJacob Faibussowitsch { 53133e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 53143e9753d6SMatthew G. Knepley const char *name = "Jacobian"; 53159a2a23afSMatthew G. Knepley DM dmAux = NULL, plex, tdm; 53163e9753d6SMatthew G. Knepley DMEnclosureType encAux; 53173e9753d6SMatthew G. Knepley Vec A, tv; 53183e9753d6SMatthew G. Knepley DMField coordField; 53193e9753d6SMatthew G. Knepley PetscDS prob, probAux = NULL; 5320e432b41dSStefano Zampini PetscSection section, globalSection, sectionAux; 53213e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP, *elemMatD, *u, *u_t, *a = NULL; 53223e9753d6SMatthew G. Knepley const PetscInt *cells; 53233e9753d6SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 532428351e22SJed Brown PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 5325e04ae0b4SMatthew G. Knepley PetscBool hasJac = PETSC_FALSE, hasPrec = PETSC_FALSE, hasDyn, hasFV = PETSC_FALSE, transform; 53263e9753d6SMatthew G. Knepley 53273e9753d6SMatthew G. Knepley PetscFunctionBegin; 5328e04ae0b4SMatthew G. Knepley if (!cellIS) goto end; 53299566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5330437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 5331437e83fbSMatthew G. Knepley if (cStart >= cEnd) goto end; 5332437e83fbSMatthew G. Knepley PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 53339566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 53349566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformDM_Internal(dm, &tdm)); 53359566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 53369566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 53379566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 53389566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 53399566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 53409566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 53419566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobian(prob, &hasJac)); 53429566063dSJacob Faibussowitsch PetscCall(PetscDSHasJacobianPreconditioner(prob, &hasPrec)); 53433e9753d6SMatthew G. Knepley /* user passed in the same matrix, avoid double contributions and 53443e9753d6SMatthew G. Knepley only assemble the Jacobian */ 53453e9753d6SMatthew G. Knepley if (hasJac && Jac == JacP) hasPrec = PETSC_FALSE; 53469566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 53473e9753d6SMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 53489566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 53499a2a23afSMatthew G. Knepley if (A) { 53509566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 53519566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 53529566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plex)); 53539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex, §ionAux)); 53549566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 53559566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 53563e9753d6SMatthew G. Knepley } 53579566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, hasJac ? numCells * totDim * totDim : 0, &elemMat, hasPrec ? numCells * totDim * totDim : 0, &elemMatP, hasDyn ? numCells * totDim * totDim : 0, &elemMatD)); 53589566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 53599566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 53603e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 53613e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 53623e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 53633e9753d6SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 53643e9753d6SMatthew G. Knepley PetscInt i; 53653e9753d6SMatthew G. Knepley 53669566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X, cell, NULL, &x)); 53673e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 53689566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x)); 53693e9753d6SMatthew G. Knepley if (X_t) { 53709566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t)); 53713e9753d6SMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 53729566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t)); 53733e9753d6SMatthew G. Knepley } 53743e9753d6SMatthew G. Knepley if (dmAux) { 53753e9753d6SMatthew G. Knepley PetscInt subcell; 53769566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 53779566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, sectionAux, A, subcell, NULL, &x)); 53783e9753d6SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 53799566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, sectionAux, A, subcell, NULL, &x)); 53803e9753d6SMatthew G. Knepley } 53813e9753d6SMatthew G. Knepley } 53829566063dSJacob Faibussowitsch if (hasJac) PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 53839566063dSJacob Faibussowitsch if (hasPrec) PetscCall(PetscArrayzero(elemMatP, numCells * totDim * totDim)); 53849566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 53853e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 53863e9753d6SMatthew G. Knepley PetscClassId id; 53873e9753d6SMatthew G. Knepley PetscFE fe; 53883e9753d6SMatthew G. Knepley PetscQuadrature qGeom = NULL; 53893e9753d6SMatthew G. Knepley PetscInt Nb; 53903e9753d6SMatthew G. Knepley /* Conforming batches */ 53913e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 53923e9753d6SMatthew G. Knepley /* Remainder */ 53933e9753d6SMatthew G. Knepley PetscInt Nr, offset, Nq; 53943e9753d6SMatthew G. Knepley PetscInt maxDegree; 53953e9753d6SMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 53963e9753d6SMatthew G. Knepley 53979566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 53989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fe, &id)); 53999371c9d4SSatish Balay if (id == PETSCFV_CLASSID) { 54009371c9d4SSatish Balay hasFV = PETSC_TRUE; 54019371c9d4SSatish Balay continue; 54029371c9d4SSatish Balay } 54039566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 54049566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 54059566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 540648a46eb9SPierre Jolivet if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 54073e9753d6SMatthew G. Knepley if (!qGeom) { 54089566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 54099566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 54103e9753d6SMatthew G. Knepley } 54119566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 54129566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 54133e9753d6SMatthew G. Knepley blockSize = Nb; 54143e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 54159566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 54163e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 54173e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 54183e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 54193e9753d6SMatthew G. Knepley offset = numCells - Nr; 54209566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 54219566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 54223e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 54236528b96dSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 54243e9753d6SMatthew G. Knepley if (hasJac) { 54259566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 54269566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim])); 54273e9753d6SMatthew G. Knepley } 54283e9753d6SMatthew G. Knepley if (hasPrec) { 54299566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatP)); 54309566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_PRE, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatP[offset * totDim * totDim])); 54313e9753d6SMatthew G. Knepley } 54323e9753d6SMatthew G. Knepley if (hasDyn) { 54339566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 54349566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 54353e9753d6SMatthew G. Knepley } 54363e9753d6SMatthew G. Knepley } 54379566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 54389566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 54399566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 54409566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 54413e9753d6SMatthew G. Knepley } 54423e9753d6SMatthew G. Knepley /* Add contribution from X_t */ 54439371c9d4SSatish Balay if (hasDyn) { 54449371c9d4SSatish Balay for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 54459371c9d4SSatish Balay } 54463e9753d6SMatthew G. Knepley if (hasFV) { 54473e9753d6SMatthew G. Knepley PetscClassId id; 54483e9753d6SMatthew G. Knepley PetscFV fv; 54493e9753d6SMatthew G. Knepley PetscInt offsetI, NcI, NbI = 1, fc, f; 54503e9753d6SMatthew G. Knepley 54513e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 54529566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fv)); 54539566063dSJacob Faibussowitsch PetscCall(PetscDSGetFieldOffset(prob, fieldI, &offsetI)); 54549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId((PetscObject)fv, &id)); 54553e9753d6SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 54563e9753d6SMatthew G. Knepley /* Put in the identity */ 54579566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &NcI)); 54583e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 54593e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 54603e9753d6SMatthew G. Knepley const PetscInt eOffset = cind * totDim * totDim; 54613e9753d6SMatthew G. Knepley for (fc = 0; fc < NcI; ++fc) { 54623e9753d6SMatthew G. Knepley for (f = 0; f < NbI; ++f) { 54633e9753d6SMatthew G. Knepley const PetscInt i = offsetI + f * NcI + fc; 54643e9753d6SMatthew G. Knepley if (hasPrec) { 5465ad540459SPierre Jolivet if (hasJac) elemMat[eOffset + i * totDim + i] = 1.0; 54663e9753d6SMatthew G. Knepley elemMatP[eOffset + i * totDim + i] = 1.0; 54679371c9d4SSatish Balay } else { 54689371c9d4SSatish Balay elemMat[eOffset + i * totDim + i] = 1.0; 54699371c9d4SSatish Balay } 54703e9753d6SMatthew G. Knepley } 54713e9753d6SMatthew G. Knepley } 54723e9753d6SMatthew G. Knepley } 54733e9753d6SMatthew G. Knepley } 54743e9753d6SMatthew G. Knepley /* No allocated space for FV stuff, so ignore the zero entries */ 54759566063dSJacob Faibussowitsch PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE)); 54763e9753d6SMatthew G. Knepley } 54773e9753d6SMatthew G. Knepley /* Insert values into matrix */ 54783e9753d6SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 54793e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 54803e9753d6SMatthew G. Knepley const PetscInt cind = c - cStart; 54813e9753d6SMatthew G. Knepley 54823e9753d6SMatthew G. Knepley /* Transform to global basis before insertion in Jacobian */ 54839566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexBasisTransformPointTensor_Internal(dm, tdm, tv, cell, PETSC_TRUE, totDim, &elemMat[cind * totDim * totDim])); 54843e9753d6SMatthew G. Knepley if (hasPrec) { 54853e9753d6SMatthew G. Knepley if (hasJac) { 54869566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 54879566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 54883e9753d6SMatthew G. Knepley } 54899566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 54909566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 54913e9753d6SMatthew G. Knepley } else { 54923e9753d6SMatthew G. Knepley if (hasJac) { 54939566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 54949566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(dm, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 54953e9753d6SMatthew G. Knepley } 54963e9753d6SMatthew G. Knepley } 54973e9753d6SMatthew G. Knepley } 54989566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 54999566063dSJacob Faibussowitsch if (hasFV) PetscCall(MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE)); 55009566063dSJacob Faibussowitsch PetscCall(PetscFree5(u, u_t, elemMat, elemMatP, elemMatD)); 55013e9753d6SMatthew G. Knepley if (dmAux) { 55029566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 55039566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 55043e9753d6SMatthew G. Knepley } 55053e9753d6SMatthew G. Knepley /* Compute boundary integrals */ 55069566063dSJacob Faibussowitsch PetscCall(DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, user)); 55073e9753d6SMatthew G. Knepley /* Assemble matrix */ 55089371c9d4SSatish Balay end : { 5509e04ae0b4SMatthew G. Knepley PetscBool assOp = hasJac && hasPrec ? PETSC_TRUE : PETSC_FALSE, gassOp; 5510e04ae0b4SMatthew G. Knepley 5511e04ae0b4SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&assOp, &gassOp, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 55123e9753d6SMatthew G. Knepley if (hasJac && hasPrec) { 55139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY)); 55149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY)); 55153e9753d6SMatthew G. Knepley } 5516e04ae0b4SMatthew G. Knepley } 55179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY)); 55189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY)); 55199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 55203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55213e9753d6SMatthew G. Knepley } 55223e9753d6SMatthew G. Knepley 5523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Hybrid_Internal(DM dm, PetscFormKey key[], IS cellIS, PetscReal t, PetscReal X_tShift, Vec locX, Vec locX_t, Mat Jac, Mat JacP, void *user) 5524d71ae5a4SJacob Faibussowitsch { 55253e9753d6SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 55263e9753d6SMatthew G. Knepley const char *name = "Hybrid Jacobian"; 5527148442b3SMatthew G. Knepley DM dmAux[3] = {NULL, NULL, NULL}; 5528148442b3SMatthew G. Knepley DMLabel ghostLabel = NULL; 55293e9753d6SMatthew G. Knepley DM plex = NULL; 55303e9753d6SMatthew G. Knepley DM plexA = NULL; 5531148442b3SMatthew G. Knepley PetscDS ds = NULL; 5532148442b3SMatthew G. Knepley PetscDS dsAux[3] = {NULL, NULL, NULL}; 5533148442b3SMatthew G. Knepley Vec locA[3] = {NULL, NULL, NULL}; 55343e9753d6SMatthew G. Knepley PetscSection section = NULL; 5535148442b3SMatthew G. Knepley PetscSection sectionAux[3] = {NULL, NULL, NULL}; 55363e9753d6SMatthew G. Knepley DMField coordField = NULL; 5537148442b3SMatthew G. Knepley PetscScalar *u = NULL, *u_t, *a[3]; 55383e9753d6SMatthew G. Knepley PetscScalar *elemMat, *elemMatP; 5539e432b41dSStefano Zampini PetscSection globalSection; 55403e9753d6SMatthew G. Knepley IS chunkIS; 55413e9753d6SMatthew G. Knepley const PetscInt *cells; 55423e9753d6SMatthew G. Knepley PetscInt *faces; 55433e9753d6SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 5544148442b3SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, totDim, totDimAux[3], numChunks, cellChunkSize, chunk; 55453e9753d6SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 55463e9753d6SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 55473e9753d6SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 5548e432b41dSStefano Zampini PetscBool hasBdJac, hasBdPrec; 55493e9753d6SMatthew G. Knepley 55503e9753d6SMatthew G. Knepley PetscFunctionBegin; 55513ba16761SJacob Faibussowitsch if (!cellIS) PetscFunctionReturn(PETSC_SUCCESS); 5552437e83fbSMatthew G. Knepley PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 5553437e83fbSMatthew G. Knepley PetscCall(ISGetLocalSize(cellIS, &numCells)); 55543ba16761SJacob Faibussowitsch if (cStart >= cEnd) PetscFunctionReturn(PETSC_SUCCESS); 55555fedec97SMatthew G. Knepley if ((key[0].label == key[1].label) && (key[0].value == key[1].value) && (key[0].part == key[1].part)) { 55565fedec97SMatthew G. Knepley const char *name; 55579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)key[0].label, &name)); 555863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Form keys for each side of a cohesive surface must be different (%s, %" PetscInt_FMT ", %" PetscInt_FMT ")", name, key[0].value, key[0].part); 55595fedec97SMatthew G. Knepley } 55609566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 55619566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 55629566063dSJacob Faibussowitsch PetscCall(DMGetSection(dm, §ion)); 55639566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 55649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "ghost", &ghostLabel)); 55651059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &ds)); 55669566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 55679566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(ds, &totDim)); 55689566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobian(ds, &hasBdJac)); 55699566063dSJacob Faibussowitsch PetscCall(PetscDSHasBdJacobianPreconditioner(ds, &hasBdPrec)); 55709566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[2].label, key[2].value, key[2].part, &locA[2])); 5571148442b3SMatthew G. Knepley if (locA[2]) { 55721059d808SMatthew G. Knepley const PetscInt cellStart = cells ? cells[cStart] : cStart; 55731059d808SMatthew G. Knepley 55749566063dSJacob Faibussowitsch PetscCall(VecGetDM(locA[2], &dmAux[2])); 55759566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux[2], DMPLEX, &plexA)); 55769566063dSJacob Faibussowitsch PetscCall(DMGetSection(dmAux[2], §ionAux[2])); 55771059d808SMatthew G. Knepley PetscCall(DMGetCellDS(dmAux[2], cellStart, &dsAux[2])); 55789566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[2], &totDimAux[2])); 5579148442b3SMatthew G. Knepley { 5580148442b3SMatthew G. Knepley const PetscInt *cone; 5581148442b3SMatthew G. Knepley PetscInt c; 5582148442b3SMatthew G. Knepley 55831059d808SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, cellStart, &cone)); 5584148442b3SMatthew G. Knepley for (c = 0; c < 2; ++c) { 5585148442b3SMatthew G. Knepley const PetscInt *support; 5586148442b3SMatthew G. Knepley PetscInt ssize, s; 5587148442b3SMatthew G. Knepley 55889566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[c], &support)); 55899566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[c], &ssize)); 55901059d808SMatthew G. Knepley PetscCheck(ssize == 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " from cell %" PetscInt_FMT " has support size %" PetscInt_FMT " != 2", cone[c], cellStart, ssize); 55911059d808SMatthew G. Knepley if (support[0] == cellStart) s = 1; 55921059d808SMatthew G. Knepley else if (support[1] == cellStart) s = 0; 55931059d808SMatthew G. Knepley else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " does not have cell %" PetscInt_FMT " in its support", cone[c], cellStart); 55949566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key[c].label, key[c].value, key[c].part, &locA[c])); 55959566063dSJacob Faibussowitsch if (locA[c]) PetscCall(VecGetDM(locA[c], &dmAux[c])); 5596ad540459SPierre Jolivet else dmAux[c] = dmAux[2]; 55979566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dmAux[c], support[s], &dsAux[c])); 55989566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(dsAux[c], &totDimAux[c])); 5599148442b3SMatthew G. Knepley } 5600148442b3SMatthew G. Knepley } 56013e9753d6SMatthew G. Knepley } 56029566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 56039566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 56043e9753d6SMatthew G. Knepley if (maxDegree > 1) { 56053e9753d6SMatthew G. Knepley PetscInt f; 56069566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &quads, Nf, &geoms)); 56073e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56083e9753d6SMatthew G. Knepley PetscFE fe; 56093e9753d6SMatthew G. Knepley 56109566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, f, (PetscObject *)&fe)); 56113e9753d6SMatthew G. Knepley if (fe) { 56129566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quads[f])); 56139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)quads[f])); 56143e9753d6SMatthew G. Knepley } 56153e9753d6SMatthew G. Knepley } 56163e9753d6SMatthew G. Knepley } 56173e9753d6SMatthew G. Knepley cellChunkSize = numCells; 56183e9753d6SMatthew G. Knepley numChunks = !numCells ? 0 : PetscCeilReal(((PetscReal)numCells) / cellChunkSize); 5619a4158a15SMatthew G. Knepley PetscCall(PetscCalloc1(1 * cellChunkSize, &faces)); 5620a4158a15SMatthew G. Knepley PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 1 * cellChunkSize, faces, PETSC_USE_POINTER, &chunkIS)); 56219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 56229566063dSJacob Faibussowitsch PetscCall(DMPlexGetHybridAuxFields(dm, dmAux, dsAux, cellIS, locA, a)); 56239566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat)); 56249566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP)); 56253e9753d6SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 56263e9753d6SMatthew G. Knepley PetscInt cS = cStart + chunk * cellChunkSize, cE = PetscMin(cS + cellChunkSize, cEnd), numCells = cE - cS, c; 56273e9753d6SMatthew G. Knepley 56289566063dSJacob Faibussowitsch if (hasBdJac) PetscCall(PetscMemzero(elemMat, numCells * totDim * totDim * sizeof(PetscScalar))); 56299566063dSJacob Faibussowitsch if (hasBdPrec) PetscCall(PetscMemzero(elemMatP, numCells * totDim * totDim * sizeof(PetscScalar))); 56303e9753d6SMatthew G. Knepley /* Get faces */ 56313e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 56323e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 56333e9753d6SMatthew G. Knepley const PetscInt *cone; 56349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(plex, cell, &cone)); 5635a4158a15SMatthew G. Knepley faces[0 * cellChunkSize + (c - cS)] = cone[0]; 5636a4158a15SMatthew G. Knepley /*faces[2*cellChunkSize+(c-cS)] = cone[1];*/ 56373e9753d6SMatthew G. Knepley } 5638a4158a15SMatthew G. Knepley PetscCall(ISGeneralSetIndices(chunkIS, 1 * cellChunkSize, faces, PETSC_USE_POINTER)); 56393e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 56409566063dSJacob Faibussowitsch if (!affineQuad) PetscCall(DMFieldCreateDefaultQuadrature(coordField, chunkIS, &affineQuad)); 56419566063dSJacob Faibussowitsch if (affineQuad) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, affineQuad, PETSC_TRUE, &affineGeom)); 56423e9753d6SMatthew G. Knepley } else { 56433e9753d6SMatthew G. Knepley PetscInt f; 56443e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 56459566063dSJacob Faibussowitsch if (quads[f]) PetscCall(DMSNESGetFEGeom(coordField, chunkIS, quads[f], PETSC_TRUE, &geoms[f])); 56463e9753d6SMatthew G. Knepley } 56473e9753d6SMatthew G. Knepley } 56483e9753d6SMatthew G. Knepley 56493e9753d6SMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 56503e9753d6SMatthew G. Knepley PetscFE feI; 56513e9753d6SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[fieldI]; 56523e9753d6SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL, *remGeom = NULL; 56533e9753d6SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[fieldI]; 56543e9753d6SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset, Nq, Nb; 56555fedec97SMatthew G. Knepley PetscBool isCohesiveField; 56563e9753d6SMatthew G. Knepley 56579566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldI, (PetscObject *)&feI)); 56583e9753d6SMatthew G. Knepley if (!feI) continue; 56599566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(feI, NULL, &numBlocks, NULL, &numBatches)); 56609566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL)); 56619566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(feI, &Nb)); 56623e9753d6SMatthew G. Knepley blockSize = Nb; 56633e9753d6SMatthew G. Knepley batchSize = numBlocks * blockSize; 56649566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(feI, blockSize, numBlocks, batchSize, numBatches)); 56653e9753d6SMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 56663e9753d6SMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 56673e9753d6SMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 56683e9753d6SMatthew G. Knepley offset = numCells - Nr; 56699566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, 0, offset, &chunkGeom)); 56709566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(geom, offset, numCells, &remGeom)); 56719566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, fieldI, &isCohesiveField)); 56723e9753d6SMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 56733e9753d6SMatthew G. Knepley PetscFE feJ; 56743e9753d6SMatthew G. Knepley 56759566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(ds, fieldJ, (PetscObject *)&feJ)); 56763e9753d6SMatthew G. Knepley if (!feJ) continue; 5677148442b3SMatthew G. Knepley key[0].field = fieldI * Nf + fieldJ; 5678148442b3SMatthew G. Knepley key[1].field = fieldI * Nf + fieldJ; 56795fedec97SMatthew G. Knepley key[2].field = fieldI * Nf + fieldJ; 5680148442b3SMatthew G. Knepley if (hasBdJac) { 56819566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMat)); 56829566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMat[offset * totDim * totDim])); 56839566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMat)); 56849566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMat[offset * totDim * totDim])); 5685148442b3SMatthew G. Knepley } 5686148442b3SMatthew G. Knepley if (hasBdPrec) { 56879566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Ne, chunkGeom, u, u_t, dsAux[0], a[0], t, X_tShift, elemMatP)); 56889566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[0], 0, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[0], &a[0][offset * totDimAux[0]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 56899566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Ne, chunkGeom, u, u_t, dsAux[1], a[1], t, X_tShift, elemMatP)); 56909566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[1], 1, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[1], &a[1][offset * totDimAux[1]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 5691148442b3SMatthew G. Knepley } 56925fedec97SMatthew G. Knepley if (hasBdJac) { 56939566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMat)); 56949566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMat[offset * totDim * totDim])); 5695148442b3SMatthew G. Knepley } 56965fedec97SMatthew G. Knepley if (hasBdPrec) { 56979566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Ne, chunkGeom, u, u_t, dsAux[2], a[2], t, X_tShift, elemMatP)); 56989566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateHybridJacobian(ds, PETSCFE_JACOBIAN_PRE, key[2], 2, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, dsAux[2], &a[2][offset * totDimAux[2]], t, X_tShift, &elemMatP[offset * totDim * totDim])); 56993e9753d6SMatthew G. Knepley } 57003e9753d6SMatthew G. Knepley } 57019566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, offset, numCells, &remGeom)); 57029566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(geom, 0, offset, &chunkGeom)); 57033e9753d6SMatthew G. Knepley } 57043e9753d6SMatthew G. Knepley /* Insert values into matrix */ 57053e9753d6SMatthew G. Knepley for (c = cS; c < cE; ++c) { 57063e9753d6SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 57073e9753d6SMatthew G. Knepley const PetscInt cind = c - cS; 57083e9753d6SMatthew G. Knepley 57093e9753d6SMatthew G. Knepley if (hasBdPrec) { 57103e9753d6SMatthew G. Knepley if (hasBdJac) { 57119566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 57129566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, Jac, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 57133e9753d6SMatthew G. Knepley } 57149566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMatP[cind * totDim * totDim])); 57159566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMatP[cind * totDim * totDim], ADD_VALUES)); 57163e9753d6SMatthew G. Knepley } else if (hasBdJac) { 57179566063dSJacob Faibussowitsch if (mesh->printFEM > 1) PetscCall(DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 57189566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex, section, globalSection, JacP, cell, &elemMat[cind * totDim * totDim], ADD_VALUES)); 57193e9753d6SMatthew G. Knepley } 57203e9753d6SMatthew G. Knepley } 57213e9753d6SMatthew G. Knepley } 57229566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreCellFields(dm, cellIS, locX, locX_t, locA[2], &u, &u_t, &a[2])); 57239566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreHybridAuxFields(dmAux, dsAux, cellIS, locA, a)); 57249566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdJac ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMat)); 57259566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, hasBdPrec ? cellChunkSize * totDim * totDim : 0, MPIU_SCALAR, &elemMatP)); 57269566063dSJacob Faibussowitsch PetscCall(PetscFree(faces)); 57279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&chunkIS)); 57289566063dSJacob Faibussowitsch PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 57293e9753d6SMatthew G. Knepley if (maxDegree <= 1) { 57309566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, affineQuad, PETSC_FALSE, &affineGeom)); 57319566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&affineQuad)); 57323e9753d6SMatthew G. Knepley } else { 57333e9753d6SMatthew G. Knepley PetscInt f; 57343e9753d6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 57359566063dSJacob Faibussowitsch if (geoms) PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, quads[f], PETSC_FALSE, &geoms[f])); 57369566063dSJacob Faibussowitsch if (quads) PetscCall(PetscQuadratureDestroy(&quads[f])); 57373e9753d6SMatthew G. Knepley } 57389566063dSJacob Faibussowitsch PetscCall(PetscFree2(quads, geoms)); 57393e9753d6SMatthew G. Knepley } 57409566063dSJacob Faibussowitsch if (dmAux[2]) PetscCall(DMDestroy(&plexA)); 57419566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 57429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 57433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57443e9753d6SMatthew G. Knepley } 57458e3a2eefSMatthew G. Knepley 57468e3a2eefSMatthew G. Knepley /* 57478e3a2eefSMatthew G. Knepley DMPlexComputeJacobian_Action_Internal - Form the local portion of the Jacobian action Z = J(X) Y at the local solution X using pointwise functions specified by the user. 57488e3a2eefSMatthew G. Knepley 57498e3a2eefSMatthew G. Knepley Input Parameters: 57508e3a2eefSMatthew G. Knepley + dm - The mesh 57518e3a2eefSMatthew G. Knepley . key - The PetscWeakFormKey indcating where integration should happen 575206ad1575SMatthew G. Knepley . cellIS - The cells to integrate over 57538e3a2eefSMatthew G. Knepley . t - The time 57548e3a2eefSMatthew G. Knepley . X_tShift - The multiplier for the Jacobian with repsect to X_t 57558e3a2eefSMatthew G. Knepley . X - Local solution vector 57568e3a2eefSMatthew G. Knepley . X_t - Time-derivative of the local solution vector 57578e3a2eefSMatthew G. Knepley . Y - Local input vector 575806ad1575SMatthew G. Knepley - user - the user context 57598e3a2eefSMatthew G. Knepley 57608e3a2eefSMatthew G. Knepley Output Parameter: 57618e3a2eefSMatthew G. Knepley . Z - Local output vector 57628e3a2eefSMatthew G. Knepley 57638e3a2eefSMatthew G. Knepley Note: 57648e3a2eefSMatthew G. Knepley We form the residual one batch of elements at a time. This allows us to offload work onto an accelerator, 57658e3a2eefSMatthew G. Knepley like a GPU, or vectorize on a multicore machine. 57668e3a2eefSMatthew G. Knepley */ 5767d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexComputeJacobian_Action_Internal(DM dm, PetscFormKey key, IS cellIS, PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Vec Y, Vec Z, void *user) 5768d71ae5a4SJacob Faibussowitsch { 57698e3a2eefSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 57708e3a2eefSMatthew G. Knepley const char *name = "Jacobian"; 57718e3a2eefSMatthew G. Knepley DM dmAux = NULL, plex, plexAux = NULL; 57728e3a2eefSMatthew G. Knepley DMEnclosureType encAux; 57738e3a2eefSMatthew G. Knepley Vec A; 57748e3a2eefSMatthew G. Knepley DMField coordField; 57758e3a2eefSMatthew G. Knepley PetscDS prob, probAux = NULL; 57768e3a2eefSMatthew G. Knepley PetscQuadrature quad; 57778e3a2eefSMatthew G. Knepley PetscSection section, globalSection, sectionAux; 57788e3a2eefSMatthew G. Knepley PetscScalar *elemMat, *elemMatD, *u, *u_t, *a = NULL, *y, *z; 57798e3a2eefSMatthew G. Knepley const PetscInt *cells; 57808e3a2eefSMatthew G. Knepley PetscInt Nf, fieldI, fieldJ; 57818e3a2eefSMatthew G. Knepley PetscInt totDim, totDimAux = 0, cStart, cEnd, numCells, c; 57828e3a2eefSMatthew G. Knepley PetscBool hasDyn; 57838e3a2eefSMatthew G. Knepley 57848e3a2eefSMatthew G. Knepley PetscFunctionBegin; 57859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 57869566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 57878e3a2eefSMatthew G. Knepley if (!cellIS) { 57888e3a2eefSMatthew G. Knepley PetscInt depth; 57898e3a2eefSMatthew G. Knepley 57909566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 57919566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &cellIS)); 57929566063dSJacob Faibussowitsch if (!cellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &cellIS)); 57938e3a2eefSMatthew G. Knepley } else { 57949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cellIS)); 57958e3a2eefSMatthew G. Knepley } 57969566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(cellIS, &numCells)); 57979566063dSJacob Faibussowitsch PetscCall(ISGetPointRange(cellIS, &cStart, &cEnd, &cells)); 57989566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 57999566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &globalSection)); 58009566063dSJacob Faibussowitsch PetscCall(DMGetCellDS(dm, cells ? cells[cStart] : cStart, &prob)); 58019566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(prob, &Nf)); 58029566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(prob, &totDim)); 58039566063dSJacob Faibussowitsch PetscCall(PetscDSHasDynamicJacobian(prob, &hasDyn)); 58048e3a2eefSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 58059566063dSJacob Faibussowitsch PetscCall(DMGetAuxiliaryVec(dm, key.label, key.value, key.part, &A)); 58068e3a2eefSMatthew G. Knepley if (A) { 58079566063dSJacob Faibussowitsch PetscCall(VecGetDM(A, &dmAux)); 58089566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmAux, dm, &encAux)); 58099566063dSJacob Faibussowitsch PetscCall(DMConvert(dmAux, DMPLEX, &plexAux)); 58109566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plexAux, §ionAux)); 58119566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmAux, &probAux)); 58129566063dSJacob Faibussowitsch PetscCall(PetscDSGetTotalDimension(probAux, &totDimAux)); 58138e3a2eefSMatthew G. Knepley } 58149566063dSJacob Faibussowitsch PetscCall(VecSet(Z, 0.0)); 58159566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(numCells * totDim, &u, X_t ? numCells * totDim : 0, &u_t, numCells * totDim * totDim, &elemMat, hasDyn ? numCells * totDim * totDim : 0, &elemMatD, numCells * totDim, &y, totDim, &z)); 58169566063dSJacob Faibussowitsch if (dmAux) PetscCall(PetscMalloc1(numCells * totDimAux, &a)); 58179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateField(dm, &coordField)); 58188e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 58198e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 58208e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 58218e3a2eefSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 58228e3a2eefSMatthew G. Knepley PetscInt i; 58238e3a2eefSMatthew G. Knepley 58249566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X, cell, NULL, &x)); 58258e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[cind * totDim + i] = x[i]; 58269566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X, cell, NULL, &x)); 58278e3a2eefSMatthew G. Knepley if (X_t) { 58289566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, X_t, cell, NULL, &x_t)); 58298e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[cind * totDim + i] = x_t[i]; 58309566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, X_t, cell, NULL, &x_t)); 58318e3a2eefSMatthew G. Knepley } 58328e3a2eefSMatthew G. Knepley if (dmAux) { 58338e3a2eefSMatthew G. Knepley PetscInt subcell; 58349566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmAux, dm, encAux, cell, &subcell)); 58359566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 58368e3a2eefSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[cind * totDimAux + i] = x[i]; 58379566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plexAux, sectionAux, A, subcell, NULL, &x)); 58388e3a2eefSMatthew G. Knepley } 58399566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(plex, section, Y, cell, NULL, &x)); 58408e3a2eefSMatthew G. Knepley for (i = 0; i < totDim; ++i) y[cind * totDim + i] = x[i]; 58419566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(plex, section, Y, cell, NULL, &x)); 58428e3a2eefSMatthew G. Knepley } 58439566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(elemMat, numCells * totDim * totDim)); 58449566063dSJacob Faibussowitsch if (hasDyn) PetscCall(PetscArrayzero(elemMatD, numCells * totDim * totDim)); 58458e3a2eefSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 58468e3a2eefSMatthew G. Knepley PetscFE fe; 58478e3a2eefSMatthew G. Knepley PetscInt Nb; 58488e3a2eefSMatthew G. Knepley /* Conforming batches */ 58498e3a2eefSMatthew G. Knepley PetscInt numChunks, numBatches, numBlocks, Ne, blockSize, batchSize; 58508e3a2eefSMatthew G. Knepley /* Remainder */ 58518e3a2eefSMatthew G. Knepley PetscInt Nr, offset, Nq; 58528e3a2eefSMatthew G. Knepley PetscQuadrature qGeom = NULL; 58538e3a2eefSMatthew G. Knepley PetscInt maxDegree; 58548e3a2eefSMatthew G. Knepley PetscFEGeom *cgeomFEM, *chunkGeom = NULL, *remGeom = NULL; 58558e3a2eefSMatthew G. Knepley 58569566063dSJacob Faibussowitsch PetscCall(PetscDSGetDiscretization(prob, fieldI, (PetscObject *)&fe)); 58579566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 58589566063dSJacob Faibussowitsch PetscCall(PetscFEGetDimension(fe, &Nb)); 58599566063dSJacob Faibussowitsch PetscCall(PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches)); 58609566063dSJacob Faibussowitsch PetscCall(DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree)); 58619566063dSJacob Faibussowitsch if (maxDegree <= 1) PetscCall(DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom)); 58628e3a2eefSMatthew G. Knepley if (!qGeom) { 58639566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &qGeom)); 58649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)qGeom)); 58658e3a2eefSMatthew G. Knepley } 58669566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL)); 58679566063dSJacob Faibussowitsch PetscCall(DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58688e3a2eefSMatthew G. Knepley blockSize = Nb; 58698e3a2eefSMatthew G. Knepley batchSize = numBlocks * blockSize; 58709566063dSJacob Faibussowitsch PetscCall(PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches)); 58718e3a2eefSMatthew G. Knepley numChunks = numCells / (numBatches * batchSize); 58728e3a2eefSMatthew G. Knepley Ne = numChunks * numBatches * batchSize; 58738e3a2eefSMatthew G. Knepley Nr = numCells % (numBatches * batchSize); 58748e3a2eefSMatthew G. Knepley offset = numCells - Nr; 58759566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, 0, offset, &chunkGeom)); 58769566063dSJacob Faibussowitsch PetscCall(PetscFEGeomGetChunk(cgeomFEM, offset, numCells, &remGeom)); 58778e3a2eefSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 58788e3a2eefSMatthew G. Knepley key.field = fieldI * Nf + fieldJ; 58799566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMat)); 58809566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMat[offset * totDim * totDim])); 58818e3a2eefSMatthew G. Knepley if (hasDyn) { 58829566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Ne, chunkGeom, u, u_t, probAux, a, t, X_tShift, elemMatD)); 58839566063dSJacob Faibussowitsch PetscCall(PetscFEIntegrateJacobian(prob, PETSCFE_JACOBIAN_DYN, key, Nr, remGeom, &u[offset * totDim], u_t ? &u_t[offset * totDim] : NULL, probAux, &a[offset * totDimAux], t, X_tShift, &elemMatD[offset * totDim * totDim])); 58848e3a2eefSMatthew G. Knepley } 58858e3a2eefSMatthew G. Knepley } 58869566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, offset, numCells, &remGeom)); 58879566063dSJacob Faibussowitsch PetscCall(PetscFEGeomRestoreChunk(cgeomFEM, 0, offset, &chunkGeom)); 58889566063dSJacob Faibussowitsch PetscCall(DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM)); 58899566063dSJacob Faibussowitsch PetscCall(PetscQuadratureDestroy(&qGeom)); 58908e3a2eefSMatthew G. Knepley } 58918e3a2eefSMatthew G. Knepley if (hasDyn) { 58928e3a2eefSMatthew G. Knepley for (c = 0; c < numCells * totDim * totDim; ++c) elemMat[c] += X_tShift * elemMatD[c]; 58938e3a2eefSMatthew G. Knepley } 58948e3a2eefSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 58958e3a2eefSMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 58968e3a2eefSMatthew G. Knepley const PetscInt cind = c - cStart; 58978e3a2eefSMatthew G. Knepley const PetscBLASInt M = totDim, one = 1; 58988e3a2eefSMatthew G. Knepley const PetscScalar a = 1.0, b = 0.0; 58998e3a2eefSMatthew G. Knepley 5900792fecdfSBarry Smith PetscCallBLAS("BLASgemv", BLASgemv_("N", &M, &M, &a, &elemMat[cind * totDim * totDim], &M, &y[cind * totDim], &one, &b, z, &one)); 59018e3a2eefSMatthew G. Knepley if (mesh->printFEM > 1) { 59029566063dSJacob Faibussowitsch PetscCall(DMPrintCellMatrix(c, name, totDim, totDim, &elemMat[cind * totDim * totDim])); 59039566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Y", totDim, &y[cind * totDim])); 59049566063dSJacob Faibussowitsch PetscCall(DMPrintCellVector(c, "Z", totDim, z)); 59058e3a2eefSMatthew G. Knepley } 59069566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dm, section, Z, cell, z, ADD_VALUES)); 59078e3a2eefSMatthew G. Knepley } 59089566063dSJacob Faibussowitsch PetscCall(PetscFree6(u, u_t, elemMat, elemMatD, y, z)); 59098e3a2eefSMatthew G. Knepley if (mesh->printFEM) { 59109566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)Z), "Z:\n")); 59119566063dSJacob Faibussowitsch PetscCall(VecView(Z, NULL)); 59128e3a2eefSMatthew G. Knepley } 59131059d808SMatthew G. Knepley PetscCall(ISRestorePointRange(cellIS, &cStart, &cEnd, &cells)); 59149566063dSJacob Faibussowitsch PetscCall(PetscFree(a)); 59159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 59169566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexAux)); 59179566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 59189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_JacobianFEM, dm, 0, 0, 0)); 59193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59208e3a2eefSMatthew G. Knepley } 5921