1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3bfabdd78SPatrick Farrell #include <petscsnes.h> 4cb1e1211SMatthew G Knepley 5e8f14785SLisandro Dalcin #include <petsc/private/hashsetij.h> 6af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 7af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 8a0845e3aSMatthew G. Knepley 92f856554SMatthew G. Knepley static PetscErrorCode DMPlexConvertPlex(DM dm, DM *plex, PetscBool copy) 102f856554SMatthew G. Knepley { 112f856554SMatthew G. Knepley PetscBool isPlex; 122f856554SMatthew G. Knepley PetscErrorCode ierr; 132f856554SMatthew G. Knepley 142f856554SMatthew G. Knepley PetscFunctionBegin; 152f856554SMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) dm, DMPLEX, &isPlex);CHKERRQ(ierr); 162f856554SMatthew G. Knepley if (isPlex) { 172f856554SMatthew G. Knepley *plex = dm; 182f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 192f856554SMatthew G. Knepley } else { 202f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dm_plex", (PetscObject *) plex);CHKERRQ(ierr); 212f856554SMatthew G. Knepley if (!*plex) { 222f856554SMatthew G. Knepley ierr = DMConvert(dm,DMPLEX,plex);CHKERRQ(ierr); 232f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) dm, "dm_plex", (PetscObject) *plex);CHKERRQ(ierr); 242f856554SMatthew G. Knepley if (copy) { 252f856554SMatthew G. Knepley const char *comps[3] = {"A", "dmAux"}; 262f856554SMatthew G. Knepley PetscObject obj; 272f856554SMatthew G. Knepley PetscInt i; 282f856554SMatthew G. Knepley 292f856554SMatthew G. Knepley { 302f856554SMatthew G. Knepley /* Run the subdomain hook (this will copy the DMSNES/DMTS) */ 312f856554SMatthew G. Knepley DMSubDomainHookLink link; 322f856554SMatthew G. Knepley for (link = dm->subdomainhook; link; link = link->next) { 332f856554SMatthew G. Knepley if (link->ddhook) {ierr = (*link->ddhook)(dm, *plex, link->ctx);CHKERRQ(ierr);} 342f856554SMatthew G. Knepley } 352f856554SMatthew G. Knepley } 362f856554SMatthew G. Knepley for (i = 0; i < 3; i++) { 372f856554SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, comps[i], &obj);CHKERRQ(ierr); 382f856554SMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) *plex, comps[i], obj);CHKERRQ(ierr); 392f856554SMatthew G. Knepley } 402f856554SMatthew G. Knepley } 412f856554SMatthew G. Knepley } else { 422f856554SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) *plex);CHKERRQ(ierr); 432f856554SMatthew G. Knepley } 442f856554SMatthew G. Knepley } 452f856554SMatthew G. Knepley PetscFunctionReturn(0); 462f856554SMatthew G. Knepley } 472f856554SMatthew G. Knepley 489b6f715bSMatthew G. Knepley static PetscErrorCode PetscContainerUserDestroy_PetscFEGeom (void *ctx) 499b6f715bSMatthew G. Knepley { 509b6f715bSMatthew G. Knepley PetscFEGeom *geom = (PetscFEGeom *) ctx; 519b6f715bSMatthew G. Knepley PetscErrorCode ierr; 529b6f715bSMatthew G. Knepley 539b6f715bSMatthew G. Knepley PetscFunctionBegin; 549b6f715bSMatthew G. Knepley ierr = PetscFEGeomDestroy(&geom);CHKERRQ(ierr); 559b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 569b6f715bSMatthew G. Knepley } 579b6f715bSMatthew G. Knepley 589b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 599b6f715bSMatthew G. Knepley { 609b6f715bSMatthew G. Knepley char composeStr[33] = {0}; 619b6f715bSMatthew G. Knepley PetscObjectId id; 629b6f715bSMatthew G. Knepley PetscContainer container; 639b6f715bSMatthew G. Knepley PetscErrorCode ierr; 649b6f715bSMatthew G. Knepley 659b6f715bSMatthew G. Knepley PetscFunctionBegin; 669b6f715bSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 679b6f715bSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMPlexGetFEGeom_%x\n", id);CHKERRQ(ierr); 689b6f715bSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 699b6f715bSMatthew G. Knepley if (container) { 709b6f715bSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 719b6f715bSMatthew G. Knepley } else { 729b6f715bSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 739b6f715bSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 749b6f715bSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 759b6f715bSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 769b6f715bSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 779b6f715bSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 789b6f715bSMatthew G. Knepley } 799b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 809b6f715bSMatthew G. Knepley } 819b6f715bSMatthew G. Knepley 829b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 839b6f715bSMatthew G. Knepley { 849b6f715bSMatthew G. Knepley PetscFunctionBegin; 859b6f715bSMatthew G. Knepley *geom = NULL; 869b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 879b6f715bSMatthew G. Knepley } 889b6f715bSMatthew G. Knepley 8946fa42a0SMatthew G. Knepley /*@ 9046fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 9146fa42a0SMatthew G. Knepley 9246fa42a0SMatthew G. Knepley Not collective 9346fa42a0SMatthew G. Knepley 9446fa42a0SMatthew G. Knepley Input Arguments: 9546fa42a0SMatthew G. Knepley + dm - the DM 9646fa42a0SMatthew G. Knepley - unit - The SI unit 9746fa42a0SMatthew G. Knepley 9846fa42a0SMatthew G. Knepley Output Argument: 9946fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 10046fa42a0SMatthew G. Knepley 10146fa42a0SMatthew G. Knepley Level: advanced 10246fa42a0SMatthew G. Knepley 10346fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit 10446fa42a0SMatthew G. Knepley @*/ 105cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 106cb1e1211SMatthew G Knepley { 107cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 108cb1e1211SMatthew G Knepley 109cb1e1211SMatthew G Knepley PetscFunctionBegin; 110cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 111cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 112cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 113cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 114cb1e1211SMatthew G Knepley } 115cb1e1211SMatthew G Knepley 11646fa42a0SMatthew G. Knepley /*@ 11746fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 11846fa42a0SMatthew G. Knepley 11946fa42a0SMatthew G. Knepley Not collective 12046fa42a0SMatthew G. Knepley 12146fa42a0SMatthew G. Knepley Input Arguments: 12246fa42a0SMatthew G. Knepley + dm - the DM 12346fa42a0SMatthew G. Knepley . unit - The SI unit 12446fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 12546fa42a0SMatthew G. Knepley 12646fa42a0SMatthew G. Knepley Level: advanced 12746fa42a0SMatthew G. Knepley 12846fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit 12946fa42a0SMatthew G. Knepley @*/ 130cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 131cb1e1211SMatthew G Knepley { 132cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 133cb1e1211SMatthew G Knepley 134cb1e1211SMatthew G Knepley PetscFunctionBegin; 135cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 136cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 137cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 138cb1e1211SMatthew G Knepley } 139cb1e1211SMatthew G Knepley 140d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 141026175e5SToby Isaac { 14212adca46SMatthew G. Knepley const PetscInt eps[3][3][3] = {{{0, 0, 0}, {0, 0, 1}, {0, -1, 0}}, {{0, 0, -1}, {0, 0, 0}, {1, 0, 0}}, {{0, 1, 0}, {-1, 0, 0}, {0, 0, 0}}}; 143026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 144ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 145026175e5SToby Isaac PetscInt d = ctxInt[1]; 146026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 147026175e5SToby Isaac 148ad917190SMatthew G. Knepley PetscFunctionBegin; 149ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 150026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 151026175e5SToby Isaac if (d < dim) { 15212adca46SMatthew G. Knepley mode[d] = 1.; /* Translation along axis d */ 153ad917190SMatthew G. Knepley } else { 154026175e5SToby Isaac for (i = 0; i < dim; i++) { 155026175e5SToby Isaac for (j = 0; j < dim; j++) { 15612adca46SMatthew G. Knepley mode[j] += eps[i][j][k]*X[i]; /* Rotation about axis d */ 157026175e5SToby Isaac } 158026175e5SToby Isaac } 159026175e5SToby Isaac } 160ad917190SMatthew G. Knepley PetscFunctionReturn(0); 161026175e5SToby Isaac } 162026175e5SToby Isaac 163cc4e42d9SMartin Diehl /*@ 16412adca46SMatthew G. Knepley DMPlexCreateRigidBody - For the default global section, create rigid body modes by function space interpolation 165cb1e1211SMatthew G Knepley 166cb1e1211SMatthew G Knepley Collective on DM 167cb1e1211SMatthew G Knepley 168cb1e1211SMatthew G Knepley Input Arguments: 169026175e5SToby Isaac . dm - the DM 170cb1e1211SMatthew G Knepley 171cb1e1211SMatthew G Knepley Output Argument: 172cb1e1211SMatthew G Knepley . sp - the null space 173cb1e1211SMatthew G Knepley 17412adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 175cb1e1211SMatthew G Knepley 176cb1e1211SMatthew G Knepley Level: advanced 177cb1e1211SMatthew G Knepley 17812adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate(), PCGAMG 179cb1e1211SMatthew G Knepley @*/ 180026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 181cb1e1211SMatthew G Knepley { 182cb1e1211SMatthew G Knepley MPI_Comm comm; 183026175e5SToby Isaac Vec mode[6]; 184026175e5SToby Isaac PetscSection section, globalSection; 185b247467aSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, mmin, d, i, j; 186cb1e1211SMatthew G Knepley PetscErrorCode ierr; 187cb1e1211SMatthew G Knepley 188cb1e1211SMatthew G Knepley PetscFunctionBegin; 189cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 190c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1919d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 192cb1e1211SMatthew G Knepley if (dim == 1) { 193cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 194cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 195cb1e1211SMatthew G Knepley } 196e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 197e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 198cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 199b247467aSMatthew G. Knepley m = (dim*(dim+1))/2; 200cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 201cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 202cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 203b247467aSMatthew G. Knepley ierr = VecGetSize(mode[0], &n);CHKERRQ(ierr); 204b247467aSMatthew G. Knepley mmin = PetscMin(m, n); 205cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 206026175e5SToby Isaac for (d = 0; d < m; d++) { 207330485fdSToby Isaac PetscInt ctx[2]; 208d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 209026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 210cb1e1211SMatthew G Knepley 2119d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 212330485fdSToby Isaac ctx[1] = d; 2130709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 214cb1e1211SMatthew G Knepley } 215b247467aSMatthew G. Knepley for (i = 0; i < PetscMin(dim, mmin); ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 216cb1e1211SMatthew G Knepley /* Orthonormalize system */ 217b247467aSMatthew G. Knepley for (i = dim; i < mmin; ++i) { 218cb1e1211SMatthew G Knepley PetscScalar dots[6]; 219cb1e1211SMatthew G Knepley 220cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 221cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 222cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 223cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 224cb1e1211SMatthew G Knepley } 225b247467aSMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, mmin, mode, sp);CHKERRQ(ierr); 226b247467aSMatthew G. Knepley for (i = 0; i < m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 227cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 228cb1e1211SMatthew G Knepley } 229cb1e1211SMatthew G Knepley 230cc4e42d9SMartin Diehl /*@ 23112adca46SMatthew G. Knepley DMPlexCreateRigidBodies - For the default global section, create rigid body modes by function space interpolation 23212adca46SMatthew G. Knepley 23312adca46SMatthew G. Knepley Collective on DM 23412adca46SMatthew G. Knepley 23512adca46SMatthew G. Knepley Input Arguments: 23612adca46SMatthew G. Knepley + dm - the DM 23712adca46SMatthew G. Knepley . nb - The number of bodies 23812adca46SMatthew G. Knepley . label - The DMLabel marking each domain 23912adca46SMatthew G. Knepley . nids - The number of ids per body 24012adca46SMatthew G. Knepley - ids - An array of the label ids in sequence for each domain 24112adca46SMatthew G. Knepley 24212adca46SMatthew G. Knepley Output Argument: 24312adca46SMatthew G. Knepley . sp - the null space 24412adca46SMatthew G. Knepley 24512adca46SMatthew G. Knepley Note: This is necessary to provide a suitable coarse space for algebraic multigrid 24612adca46SMatthew G. Knepley 24712adca46SMatthew G. Knepley Level: advanced 24812adca46SMatthew G. Knepley 24912adca46SMatthew G. Knepley .seealso: MatNullSpaceCreate() 25012adca46SMatthew G. Knepley @*/ 25112adca46SMatthew G. Knepley PetscErrorCode DMPlexCreateRigidBodies(DM dm, PetscInt nb, DMLabel label, const PetscInt nids[], const PetscInt ids[], MatNullSpace *sp) 25212adca46SMatthew G. Knepley { 25312adca46SMatthew G. Knepley MPI_Comm comm; 25412adca46SMatthew G. Knepley PetscSection section, globalSection; 25512adca46SMatthew G. Knepley Vec *mode; 25612adca46SMatthew G. Knepley PetscScalar *dots; 25712adca46SMatthew G. Knepley PetscInt dim, dimEmbed, n, m, b, d, i, j, off; 25812adca46SMatthew G. Knepley PetscErrorCode ierr; 25912adca46SMatthew G. Knepley 26012adca46SMatthew G. Knepley PetscFunctionBegin; 26112adca46SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 26212adca46SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 26312adca46SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 264e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 265e87a4003SBarry Smith ierr = DMGetGlobalSection(dm, &globalSection);CHKERRQ(ierr); 26612adca46SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 26712adca46SMatthew G. Knepley m = nb * (dim*(dim+1))/2; 26812adca46SMatthew G. Knepley ierr = PetscMalloc2(m, &mode, m, &dots);CHKERRQ(ierr); 26912adca46SMatthew G. Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 27012adca46SMatthew G. Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 27112adca46SMatthew G. Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 27212adca46SMatthew G. Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 27312adca46SMatthew G. Knepley for (b = 0, off = 0; b < nb; ++b) { 27412adca46SMatthew G. Knepley for (d = 0; d < m/nb; ++d) { 27512adca46SMatthew G. Knepley PetscInt ctx[2]; 27612adca46SMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 27712adca46SMatthew G. Knepley void *voidctx = (void *) (&ctx[0]); 27812adca46SMatthew G. Knepley 27912adca46SMatthew G. Knepley ctx[0] = dimEmbed; 28012adca46SMatthew G. Knepley ctx[1] = d; 28112adca46SMatthew G. Knepley ierr = DMProjectFunctionLabel(dm, 0.0, label, nids[b], &ids[off], 0, NULL, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 28212adca46SMatthew G. Knepley off += nids[b]; 28312adca46SMatthew G. Knepley } 28412adca46SMatthew G. Knepley } 28512adca46SMatthew G. Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 28612adca46SMatthew G. Knepley /* Orthonormalize system */ 28712adca46SMatthew G. Knepley for (i = 0; i < m; ++i) { 28812adca46SMatthew G. Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 28912adca46SMatthew G. Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 29012adca46SMatthew G. Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 29112adca46SMatthew G. Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 29212adca46SMatthew G. Knepley } 29312adca46SMatthew G. Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 29412adca46SMatthew G. Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 29512adca46SMatthew G. Knepley ierr = PetscFree2(mode, dots);CHKERRQ(ierr); 29612adca46SMatthew G. Knepley PetscFunctionReturn(0); 29712adca46SMatthew G. Knepley } 29812adca46SMatthew G. Knepley 299b29cfa1cSToby Isaac /*@ 300b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 301b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 302b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 303b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 304b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 305b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 306b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 307b29cfa1cSToby Isaac 308b29cfa1cSToby Isaac Input Parameters: 309b29cfa1cSToby Isaac + dm - the DMPlex object 310b29cfa1cSToby Isaac - height - the maximum projection height >= 0 311b29cfa1cSToby Isaac 312b29cfa1cSToby Isaac Level: advanced 313b29cfa1cSToby Isaac 3144d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 315b29cfa1cSToby Isaac @*/ 316b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 317b29cfa1cSToby Isaac { 318b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 319b29cfa1cSToby Isaac 320b29cfa1cSToby Isaac PetscFunctionBegin; 321b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 322b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 323b29cfa1cSToby Isaac PetscFunctionReturn(0); 324b29cfa1cSToby Isaac } 325b29cfa1cSToby Isaac 326b29cfa1cSToby Isaac /*@ 327b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 328b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 329b29cfa1cSToby Isaac 330b29cfa1cSToby Isaac Input Parameters: 331b29cfa1cSToby Isaac . dm - the DMPlex object 332b29cfa1cSToby Isaac 333b29cfa1cSToby Isaac Output Parameters: 334b29cfa1cSToby Isaac . height - the maximum projection height 335b29cfa1cSToby Isaac 336b29cfa1cSToby Isaac Level: intermediate 337b29cfa1cSToby Isaac 3384d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 339b29cfa1cSToby Isaac @*/ 340b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 341b29cfa1cSToby Isaac { 342b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 343b29cfa1cSToby Isaac 344b29cfa1cSToby Isaac PetscFunctionBegin; 345b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 346b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 347b29cfa1cSToby Isaac PetscFunctionReturn(0); 348b29cfa1cSToby Isaac } 349b29cfa1cSToby Isaac 350ca3d3a14SMatthew G. Knepley typedef struct { 351ca3d3a14SMatthew G. Knepley PetscReal alpha; /* The first Euler angle, and in 2D the only one */ 352ca3d3a14SMatthew G. Knepley PetscReal beta; /* The second Euler angle */ 353ca3d3a14SMatthew G. Knepley PetscReal gamma; /* The third Euler angle */ 354ca3d3a14SMatthew G. Knepley PetscInt dim; /* The dimension of R */ 355ca3d3a14SMatthew G. Knepley PetscScalar *R; /* The rotation matrix, transforming a vector in the local basis to the global basis */ 356ca3d3a14SMatthew G. Knepley PetscScalar *RT; /* The transposed rotation matrix, transforming a vector in the global basis to the local basis */ 357ca3d3a14SMatthew G. Knepley } RotCtx; 358ca3d3a14SMatthew G. Knepley 359ca3d3a14SMatthew G. Knepley /* 360ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 361ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 362ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 363ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 364ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 365ca3d3a14SMatthew G. Knepley */ 366ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformSetUp_Rotation_Internal(DM dm, void *ctx) 367ca3d3a14SMatthew G. Knepley { 368ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 369ca3d3a14SMatthew G. Knepley PetscInt dim = rc->dim; 370ca3d3a14SMatthew G. Knepley PetscReal c1, s1, c2, s2, c3, s3; 371ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 372ca3d3a14SMatthew G. Knepley 373ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 374ca3d3a14SMatthew G. Knepley ierr = PetscMalloc2(PetscSqr(dim), &rc->R, PetscSqr(dim), &rc->RT);CHKERRQ(ierr); 375ca3d3a14SMatthew G. Knepley switch (dim) { 376ca3d3a14SMatthew G. Knepley case 2: 377ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 378ca3d3a14SMatthew G. Knepley rc->R[0] = c1;rc->R[1] = s1; 379ca3d3a14SMatthew G. Knepley rc->R[2] = -s1;rc->R[3] = c1; 380ca3d3a14SMatthew G. Knepley ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr); 381ca3d3a14SMatthew G. Knepley DMPlex_Transpose2D_Internal(rc->RT);break; 382ca3d3a14SMatthew G. Knepley break; 383ca3d3a14SMatthew G. Knepley case 3: 384ca3d3a14SMatthew G. Knepley c1 = PetscCosReal(rc->alpha);s1 = PetscSinReal(rc->alpha); 385ca3d3a14SMatthew G. Knepley c2 = PetscCosReal(rc->beta); s2 = PetscSinReal(rc->beta); 386ca3d3a14SMatthew G. Knepley c3 = PetscCosReal(rc->gamma);s3 = PetscSinReal(rc->gamma); 387ca3d3a14SMatthew G. Knepley rc->R[0] = c1*c3 - c2*s1*s3;rc->R[1] = c3*s1 + c1*c2*s3;rc->R[2] = s2*s3; 388ca3d3a14SMatthew G. Knepley rc->R[3] = -c1*s3 - c2*c3*s1;rc->R[4] = c1*c2*c3 - s1*s3; rc->R[5] = c3*s2; 389ca3d3a14SMatthew G. Knepley rc->R[6] = s1*s2; rc->R[7] = -c1*s2; rc->R[8] = c2; 390ca3d3a14SMatthew G. Knepley ierr = PetscMemcpy(rc->RT, rc->R, PetscSqr(dim) * sizeof(PetscScalar));CHKERRQ(ierr); 391ca3d3a14SMatthew G. Knepley DMPlex_Transpose3D_Internal(rc->RT);break; 392ca3d3a14SMatthew G. Knepley break; 393ca3d3a14SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 394ca3d3a14SMatthew G. Knepley } 395ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 396ca3d3a14SMatthew G. Knepley } 397ca3d3a14SMatthew G. Knepley 398ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformDestroy_Rotation_Internal(DM dm, void *ctx) 399ca3d3a14SMatthew G. Knepley { 400ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 401ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 402ca3d3a14SMatthew G. Knepley 403ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 404ca3d3a14SMatthew G. Knepley ierr = PetscFree2(rc->R, rc->RT);CHKERRQ(ierr); 405ca3d3a14SMatthew G. Knepley ierr = PetscFree(rc);CHKERRQ(ierr); 406ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 407ca3d3a14SMatthew G. Knepley } 408ca3d3a14SMatthew G. Knepley 409ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformGetMatrix_Rotation_Internal(DM dm, const PetscReal x[], PetscBool l2g, const PetscScalar **A, void *ctx) 410ca3d3a14SMatthew G. Knepley { 411ca3d3a14SMatthew G. Knepley RotCtx *rc = (RotCtx *) ctx; 412ca3d3a14SMatthew G. Knepley 413ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 414ca3d3a14SMatthew G. Knepley PetscValidPointer(ctx, 5); 415ca3d3a14SMatthew G. Knepley if (l2g) {*A = rc->R;} 416ca3d3a14SMatthew G. Knepley else {*A = rc->RT;} 417ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 418ca3d3a14SMatthew G. Knepley } 419ca3d3a14SMatthew G. Knepley 420ab6a9622SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApplyReal_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscReal *y, PetscReal *z, void *ctx) 421ab6a9622SMatthew G. Knepley { 422*ec277c0fSMatthew G. Knepley PetscErrorCode ierr; 423*ec277c0fSMatthew G. Knepley 424*ec277c0fSMatthew G. Knepley PetscFunctionBegin; 425ab6a9622SMatthew G. Knepley #if defined(PETSC_USE_COMPLEX) 426ab6a9622SMatthew G. Knepley switch (dim) { 427ab6a9622SMatthew G. Knepley case 2: 428ab6a9622SMatthew G. Knepley { 429ab6a9622SMatthew G. Knepley PetscScalar yt[2], zt[2]; 430ab6a9622SMatthew G. Knepley 431ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; 432*ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 433ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); 434ab6a9622SMatthew G. Knepley } 435ab6a9622SMatthew G. Knepley case 3: 436ab6a9622SMatthew G. Knepley { 437ab6a9622SMatthew G. Knepley PetscScalar yt[3], zt[3]; 438ab6a9622SMatthew G. Knepley 439ab6a9622SMatthew G. Knepley yt[0] = y[0]; yt[1] = y[1]; yt[2] = y[2]; 440*ec277c0fSMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, yt, zt, ctx);CHKERRQ(ierr); 441ab6a9622SMatthew G. Knepley z[0] = PetscRealPart(zt[0]); z[1] = PetscRealPart(zt[1]); z[2] = PetscRealPart(zt[2]); 442ab6a9622SMatthew G. Knepley } 443ab6a9622SMatthew G. Knepley } 444ab6a9622SMatthew G. Knepley #else 445ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApply_Internal(dm, x, l2g, dim, y, z, ctx);CHKERRQ(ierr); 446ab6a9622SMatthew G. Knepley #endif 447*ec277c0fSMatthew G. Knepley PetscFunctionReturn(0); 448ab6a9622SMatthew G. Knepley } 449ab6a9622SMatthew G. Knepley 450*ec277c0fSMatthew G. Knepley PetscErrorCode DMPlexBasisTransformApply_Internal(DM dm, const PetscReal x[], PetscBool l2g, PetscInt dim, const PetscScalar *y, PetscScalar *z, void *ctx) 451ca3d3a14SMatthew G. Knepley { 452ca3d3a14SMatthew G. Knepley const PetscScalar *A; 453ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 454ca3d3a14SMatthew G. Knepley 455ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 456ca3d3a14SMatthew G. Knepley ierr = (*dm->transformGetMatrix)(dm, x, l2g, &A, ctx);CHKERRQ(ierr); 457ca3d3a14SMatthew G. Knepley switch (dim) { 458ca3d3a14SMatthew G. Knepley case 2: DMPlex_Mult2D_Internal(A, y, z);break; 459ca3d3a14SMatthew G. Knepley case 3: DMPlex_Mult3D_Internal(A, y, z);break; 460ca3d3a14SMatthew G. Knepley } 461ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 462ca3d3a14SMatthew G. Knepley } 463ca3d3a14SMatthew G. Knepley 464ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformField_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscInt f, PetscBool l2g, PetscScalar *a) 465ca3d3a14SMatthew G. Knepley { 466ca3d3a14SMatthew G. Knepley PetscSection ts; 467ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tva; 468ca3d3a14SMatthew G. Knepley PetscInt dof; 469ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 470ca3d3a14SMatthew G. Knepley 471ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 472ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 473ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, p, f, &dof);CHKERRQ(ierr); 474ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 475ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, p, f, ta, (void *) &tva);CHKERRQ(ierr); 476ca3d3a14SMatthew G. Knepley if (l2g) { 477ca3d3a14SMatthew G. Knepley switch (dof) { 478ca3d3a14SMatthew G. Knepley case 4: DMPlex_Mult2D_Internal(tva, a, a);break; 479ca3d3a14SMatthew G. Knepley case 9: DMPlex_Mult3D_Internal(tva, a, a);break; 480ca3d3a14SMatthew G. Knepley } 481ca3d3a14SMatthew G. Knepley } else { 482ca3d3a14SMatthew G. Knepley switch (dof) { 483ca3d3a14SMatthew G. Knepley case 4: DMPlex_MultTranspose2D_Internal(tva, a, a);break; 484ca3d3a14SMatthew G. Knepley case 9: DMPlex_MultTranspose3D_Internal(tva, a, a);break; 485ca3d3a14SMatthew G. Knepley } 486ca3d3a14SMatthew G. Knepley } 487ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 488ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 489ca3d3a14SMatthew G. Knepley } 490ca3d3a14SMatthew G. Knepley 491ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransformFieldTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt pf, PetscInt f, PetscInt pg, PetscInt g, PetscBool l2g, PetscInt lda, PetscScalar *a) 492ca3d3a14SMatthew G. Knepley { 493ca3d3a14SMatthew G. Knepley PetscSection s, ts; 494ca3d3a14SMatthew G. Knepley const PetscScalar *ta, *tvaf, *tvag; 495ca3d3a14SMatthew G. Knepley PetscInt fdof, gdof, fpdof, gpdof; 496ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 497ca3d3a14SMatthew G. Knepley 498ca3d3a14SMatthew G. Knepley PetscFunctionBeginHot; 499ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 500ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 501ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pf, f, &fpdof);CHKERRQ(ierr); 502ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, pg, g, &gpdof);CHKERRQ(ierr); 503ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pf, f, &fdof);CHKERRQ(ierr); 504ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(ts, pg, g, &gdof);CHKERRQ(ierr); 505ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 506ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pf, f, ta, (void *) &tvaf);CHKERRQ(ierr); 507ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(tdm, pg, g, ta, (void *) &tvag);CHKERRQ(ierr); 508ca3d3a14SMatthew G. Knepley if (l2g) { 509ca3d3a14SMatthew G. Knepley switch (fdof) { 510ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMult2D_Internal(tvaf, gpdof, lda, a, a);break; 511ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMult3D_Internal(tvaf, gpdof, lda, a, a);break; 512ca3d3a14SMatthew G. Knepley } 513ca3d3a14SMatthew G. Knepley switch (gdof) { 514ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTransposeLeft2D_Internal(tvag, fpdof, lda, a, a);break; 515ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTransposeLeft3D_Internal(tvag, fpdof, lda, a, a);break; 516ca3d3a14SMatthew G. Knepley } 517ca3d3a14SMatthew G. Knepley } else { 518ca3d3a14SMatthew G. Knepley switch (fdof) { 519ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultTranspose2D_Internal(tvaf, gpdof, lda, a, a);break; 520ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultTranspose3D_Internal(tvaf, gpdof, lda, a, a);break; 521ca3d3a14SMatthew G. Knepley } 522ca3d3a14SMatthew G. Knepley switch (gdof) { 523ca3d3a14SMatthew G. Knepley case 4: DMPlex_MatMultLeft2D_Internal(tvag, fpdof, lda, a, a);break; 524ca3d3a14SMatthew G. Knepley case 9: DMPlex_MatMultLeft3D_Internal(tvag, fpdof, lda, a, a);break; 525ca3d3a14SMatthew G. Knepley } 526ca3d3a14SMatthew G. Knepley } 527ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 528ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 529ca3d3a14SMatthew G. Knepley } 530ca3d3a14SMatthew G. Knepley 531ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPoint_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool fieldActive[], PetscBool l2g, PetscScalar *a) 532ca3d3a14SMatthew G. Knepley { 533ca3d3a14SMatthew G. Knepley PetscSection s; 534ca3d3a14SMatthew G. Knepley PetscSection clSection; 535ca3d3a14SMatthew G. Knepley IS clPoints; 536ca3d3a14SMatthew G. Knepley const PetscInt *clp; 537ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 538ca3d3a14SMatthew G. Knepley PetscInt Nf, f, Np, cp, dof, d = 0; 539ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 540ca3d3a14SMatthew G. Knepley 541ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 542ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 543ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 544ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 545ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 546ca3d3a14SMatthew G. Knepley for (cp = 0; cp < Np*2; cp += 2) { 547ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cp], f, &dof);CHKERRQ(ierr); 548ca3d3a14SMatthew G. Knepley if (!dof) continue; 549ca3d3a14SMatthew G. Knepley if (fieldActive[f]) {ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, points[cp], f, l2g, &a[d]);CHKERRQ(ierr);} 550ca3d3a14SMatthew G. Knepley d += dof; 551ca3d3a14SMatthew G. Knepley } 552ca3d3a14SMatthew G. Knepley } 553ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 554ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 555ca3d3a14SMatthew G. Knepley } 556ca3d3a14SMatthew G. Knepley 557ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexBasisTransformPointTensor_Internal(DM dm, DM tdm, Vec tv, PetscInt p, PetscBool l2g, PetscInt lda, PetscScalar *a) 558ca3d3a14SMatthew G. Knepley { 559ca3d3a14SMatthew G. Knepley PetscSection s; 560ca3d3a14SMatthew G. Knepley PetscSection clSection; 561ca3d3a14SMatthew G. Knepley IS clPoints; 562ca3d3a14SMatthew G. Knepley const PetscInt *clp; 563ca3d3a14SMatthew G. Knepley PetscInt *points = NULL; 564ca3d3a14SMatthew G. Knepley PetscInt Nf, f, g, Np, cpf, cpg, fdof, gdof, r, c; 565ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 566ca3d3a14SMatthew G. Knepley 567ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 568ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 569ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 570ca3d3a14SMatthew G. Knepley ierr = DMPlexGetCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 571ca3d3a14SMatthew G. Knepley for (f = 0, r = 0; f < Nf; ++f) { 572ca3d3a14SMatthew G. Knepley for (cpf = 0; cpf < Np*2; cpf += 2) { 573ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpf], f, &fdof);CHKERRQ(ierr); 574ca3d3a14SMatthew G. Knepley for (g = 0, c = 0; g < Nf; ++g) { 575ca3d3a14SMatthew G. Knepley for (cpg = 0; cpg < Np*2; cpg += 2) { 576ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetFieldDof(s, points[cpg], g, &gdof);CHKERRQ(ierr); 577ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformFieldTensor_Internal(dm, tdm, tv, points[cpf], f, points[cpg], g, l2g, lda, &a[r*lda+c]);CHKERRQ(ierr); 578ca3d3a14SMatthew G. Knepley c += gdof; 579ca3d3a14SMatthew G. Knepley } 580ca3d3a14SMatthew G. Knepley } 581ca3d3a14SMatthew G. Knepley if (c != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of columns %D should be %D", c, lda); 582ca3d3a14SMatthew G. Knepley r += fdof; 583ca3d3a14SMatthew G. Knepley } 584ca3d3a14SMatthew G. Knepley } 585ca3d3a14SMatthew G. Knepley if (r != lda) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of rows %D should be %D", c, lda); 586ca3d3a14SMatthew G. Knepley ierr = DMPlexRestoreCompressedClosure(dm, s, p, &Np, &points, &clSection, &clPoints, &clp);CHKERRQ(ierr); 587ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 588ca3d3a14SMatthew G. Knepley } 589ca3d3a14SMatthew G. Knepley 590ca3d3a14SMatthew G. Knepley static PetscErrorCode DMPlexBasisTransform_Internal(DM dm, Vec lv, PetscBool l2g) 591ca3d3a14SMatthew G. Knepley { 592ca3d3a14SMatthew G. Knepley DM tdm; 593ca3d3a14SMatthew G. Knepley Vec tv; 594ca3d3a14SMatthew G. Knepley PetscSection ts, s; 595ca3d3a14SMatthew G. Knepley const PetscScalar *ta; 596ca3d3a14SMatthew G. Knepley PetscScalar *a, *va; 597ca3d3a14SMatthew G. Knepley PetscInt pStart, pEnd, p, Nf, f; 598ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 599ca3d3a14SMatthew G. Knepley 600ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 601ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 602ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 603ca3d3a14SMatthew G. Knepley ierr = DMGetSection(tdm, &ts);CHKERRQ(ierr); 604ca3d3a14SMatthew G. Knepley ierr = DMGetSection(dm, &s);CHKERRQ(ierr); 605ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetChart(s, &pStart, &pEnd);CHKERRQ(ierr); 606ca3d3a14SMatthew G. Knepley ierr = PetscSectionGetNumFields(s, &Nf);CHKERRQ(ierr); 607ca3d3a14SMatthew G. Knepley ierr = VecGetArray(lv, &a);CHKERRQ(ierr); 608ca3d3a14SMatthew G. Knepley ierr = VecGetArrayRead(tv, &ta);CHKERRQ(ierr); 609ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 610ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 611ca3d3a14SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, p, f, a, (void *) &va);CHKERRQ(ierr); 612ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransformField_Internal(dm, tdm, tv, p, f, l2g, va);CHKERRQ(ierr); 613ca3d3a14SMatthew G. Knepley } 614ca3d3a14SMatthew G. Knepley } 615ca3d3a14SMatthew G. Knepley ierr = VecRestoreArray(lv, &a);CHKERRQ(ierr); 616ca3d3a14SMatthew G. Knepley ierr = VecRestoreArrayRead(tv, &ta);CHKERRQ(ierr); 617ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 618ca3d3a14SMatthew G. Knepley } 619ca3d3a14SMatthew G. Knepley 620ca3d3a14SMatthew G. Knepley /*@ 621ca3d3a14SMatthew G. Knepley DMPlexGlobalToLocalBasis - Transform the values in the given local vector from the global basis to the local basis 622ca3d3a14SMatthew G. Knepley 623ca3d3a14SMatthew G. Knepley Input Parameters: 624ca3d3a14SMatthew G. Knepley + dm - The DM 625ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the global basis 626ca3d3a14SMatthew G. Knepley 627ca3d3a14SMatthew G. Knepley Output Parameters: 628ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the local basis 629ca3d3a14SMatthew G. Knepley 630ca3d3a14SMatthew G. Knepley Level: developer 631ca3d3a14SMatthew G. Knepley 632ca3d3a14SMatthew G. Knepley .seealso: DMPlexLocalToGlobalBasis(), DMGetSection() 633ca3d3a14SMatthew G. Knepley @*/ 634ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexGlobalToLocalBasis(DM dm, Vec lv) 635ca3d3a14SMatthew G. Knepley { 636ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 637ca3d3a14SMatthew G. Knepley 638ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 639ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 640ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 641ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_FALSE);CHKERRQ(ierr); 642ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 643ca3d3a14SMatthew G. Knepley } 644ca3d3a14SMatthew G. Knepley 645ca3d3a14SMatthew G. Knepley /*@ 646ca3d3a14SMatthew G. Knepley DMPlexLocalToGlobalBasis - Transform the values in the given local vector from the local basis to the global basis 647ca3d3a14SMatthew G. Knepley 648ca3d3a14SMatthew G. Knepley Input Parameters: 649ca3d3a14SMatthew G. Knepley + dm - The DM 650ca3d3a14SMatthew G. Knepley - lv - A local vector with values in the local basis 651ca3d3a14SMatthew G. Knepley 652ca3d3a14SMatthew G. Knepley Output Parameters: 653ca3d3a14SMatthew G. Knepley . lv - A local vector with values in the global basis 654ca3d3a14SMatthew G. Knepley 655ca3d3a14SMatthew G. Knepley Level: developer 656ca3d3a14SMatthew G. Knepley 657ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMGetSection() 658ca3d3a14SMatthew G. Knepley @*/ 659ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexLocalToGlobalBasis(DM dm, Vec lv) 660ca3d3a14SMatthew G. Knepley { 661ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 662ca3d3a14SMatthew G. Knepley 663ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 664ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 665ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(lv, VEC_CLASSID, 2); 666ca3d3a14SMatthew G. Knepley ierr = DMPlexBasisTransform_Internal(dm, lv, PETSC_TRUE);CHKERRQ(ierr); 667ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 668ca3d3a14SMatthew G. Knepley } 669ca3d3a14SMatthew G. Knepley 670ca3d3a14SMatthew G. Knepley /*@ 671ca3d3a14SMatthew G. Knepley DMPlexCreateBasisRotation - Create an internal transformation from the global basis, used to specify boundary conditions 672ca3d3a14SMatthew G. Knepley and global solutions, to a local basis, appropriate for discretization integrals and assembly. 673ca3d3a14SMatthew G. Knepley 674ca3d3a14SMatthew G. Knepley Input Parameters: 675ca3d3a14SMatthew G. Knepley + dm - The DM 676ca3d3a14SMatthew G. Knepley . alpha - The first Euler angle, and in 2D the only one 677ca3d3a14SMatthew G. Knepley . beta - The second Euler angle 678ca3d3a14SMatthew G. Knepley . gamma - The third Euler angle 679ca3d3a14SMatthew G. Knepley 680ca3d3a14SMatthew G. Knepley Note: Following https://en.wikipedia.org/wiki/Euler_angles, we will specify Euler angles by extrinsic rotations, meaning that 681ca3d3a14SMatthew G. Knepley we rotate with respect to a fixed initial coordinate system, the local basis (x-y-z). The global basis (X-Y-Z) is reached as follows: 682ca3d3a14SMatthew G. Knepley $ The XYZ system rotates about the z axis by alpha. The X axis is now at angle alpha with respect to the x axis. 683ca3d3a14SMatthew G. Knepley $ The XYZ system rotates again about the x axis by beta. The Z axis is now at angle beta with respect to the z axis. 684ca3d3a14SMatthew G. Knepley $ The XYZ system rotates a third time about the z axis by gamma. 685ca3d3a14SMatthew G. Knepley 686ca3d3a14SMatthew G. Knepley Level: developer 687ca3d3a14SMatthew G. Knepley 688ca3d3a14SMatthew G. Knepley .seealso: DMPlexGlobalToLocalBasis(), DMPlexLocalToGlobalBasis() 689ca3d3a14SMatthew G. Knepley @*/ 690ca3d3a14SMatthew G. Knepley PetscErrorCode DMPlexCreateBasisRotation(DM dm, PetscReal alpha, PetscReal beta, PetscReal gamma) 691ca3d3a14SMatthew G. Knepley { 692ca3d3a14SMatthew G. Knepley RotCtx *rc; 693ca3d3a14SMatthew G. Knepley PetscInt cdim; 694ca3d3a14SMatthew G. Knepley PetscErrorCode ierr; 695ca3d3a14SMatthew G. Knepley 696ca3d3a14SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 697ca3d3a14SMatthew G. Knepley ierr = PetscMalloc1(1, &rc);CHKERRQ(ierr); 698ca3d3a14SMatthew G. Knepley dm->transformCtx = rc; 699ca3d3a14SMatthew G. Knepley dm->transformSetUp = DMPlexBasisTransformSetUp_Rotation_Internal; 700ca3d3a14SMatthew G. Knepley dm->transformDestroy = DMPlexBasisTransformDestroy_Rotation_Internal; 701ca3d3a14SMatthew G. Knepley dm->transformGetMatrix = DMPlexBasisTransformGetMatrix_Rotation_Internal; 702ca3d3a14SMatthew G. Knepley rc->dim = cdim; 703ca3d3a14SMatthew G. Knepley rc->alpha = alpha; 704ca3d3a14SMatthew G. Knepley rc->beta = beta; 705ca3d3a14SMatthew G. Knepley rc->gamma = gamma; 706ca3d3a14SMatthew G. Knepley ierr = (*dm->transformSetUp)(dm, dm->transformCtx);CHKERRQ(ierr); 707ca3d3a14SMatthew G. Knepley ierr = DMConstructBasisTransform_Internal(dm);CHKERRQ(ierr); 708ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 709ca3d3a14SMatthew G. Knepley } 710ca3d3a14SMatthew G. Knepley 711b278463cSMatthew G. Knepley /*@C 712b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssential - Insert boundary values into a local vector 713b278463cSMatthew G. Knepley 714b278463cSMatthew G. Knepley Input Parameters: 715b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 716b278463cSMatthew G. Knepley . time - The time 717b278463cSMatthew G. Knepley . field - The field to constrain 7181c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7191c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 720b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 721b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 722b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 723b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 724b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 725b278463cSMatthew G. Knepley 726b278463cSMatthew G. Knepley Output Parameter: 727b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 728b278463cSMatthew G. Knepley 729b278463cSMatthew G. Knepley Level: developer 730b278463cSMatthew G. Knepley 731b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 732b278463cSMatthew G. Knepley @*/ 7331c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM dm, PetscReal time, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 73455f2e967SMatthew G. Knepley { 7350163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 73655f2e967SMatthew G. Knepley void **ctxs; 737d7ddef95SMatthew G. Knepley PetscInt numFields; 738d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 739d7ddef95SMatthew G. Knepley 740d7ddef95SMatthew G. Knepley PetscFunctionBegin; 741d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 742d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 743d7ddef95SMatthew G. Knepley funcs[field] = func; 744d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 7451c531cf8SMatthew G. Knepley ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, Nc, comps, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 746d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 747d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 748d7ddef95SMatthew G. Knepley } 749d7ddef95SMatthew G. Knepley 750b278463cSMatthew G. Knepley /*@C 751b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesEssentialField - Insert boundary values into a local vector 752b278463cSMatthew G. Knepley 753b278463cSMatthew G. Knepley Input Parameters: 754b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 755b278463cSMatthew G. Knepley . time - The time 756b278463cSMatthew G. Knepley . locU - A local vector with the input solution values 757b278463cSMatthew G. Knepley . field - The field to constrain 7581c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 7591c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 760b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 761b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 762b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 763b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 764b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 765b278463cSMatthew G. Knepley 766b278463cSMatthew G. Knepley Output Parameter: 767b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 768b278463cSMatthew G. Knepley 769b278463cSMatthew G. Knepley Level: developer 770b278463cSMatthew G. Knepley 771b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMAddBoundary() 772b278463cSMatthew G. Knepley @*/ 7731c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM dm, PetscReal time, Vec locU, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 774c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 775c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 776c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 77797b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 778b278463cSMatthew G. Knepley PetscScalar[]), 779b278463cSMatthew G. Knepley void *ctx, Vec locX) 780c60e475cSMatthew G. Knepley { 781c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 782c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 783c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78497b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 785c60e475cSMatthew G. Knepley void **ctxs; 786c60e475cSMatthew G. Knepley PetscInt numFields; 787c60e475cSMatthew G. Knepley PetscErrorCode ierr; 788c60e475cSMatthew G. Knepley 789c60e475cSMatthew G. Knepley PetscFunctionBegin; 790c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 791c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 792c60e475cSMatthew G. Knepley funcs[field] = func; 793c60e475cSMatthew G. Knepley ctxs[field] = ctx; 7941c531cf8SMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, Nc, comps, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 795c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 796c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 797c60e475cSMatthew G. Knepley } 798c60e475cSMatthew G. Knepley 799b278463cSMatthew G. Knepley /*@C 800b278463cSMatthew G. Knepley DMPlexInsertBoundaryValuesRiemann - Insert boundary values into a local vector 801b278463cSMatthew G. Knepley 802b278463cSMatthew G. Knepley Input Parameters: 803b278463cSMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 804b278463cSMatthew G. Knepley . time - The time 805b278463cSMatthew G. Knepley . faceGeometry - A vector with the FVM face geometry information 806b278463cSMatthew G. Knepley . cellGeometry - A vector with the FVM cell geometry information 807b278463cSMatthew G. Knepley . Grad - A vector with the FVM cell gradient information 808b278463cSMatthew G. Knepley . field - The field to constrain 8091c531cf8SMatthew G. Knepley . Nc - The number of constrained field components, or 0 for all components 8101c531cf8SMatthew G. Knepley . comps - An array of constrained component numbers, or NULL for all components 811b278463cSMatthew G. Knepley . label - The DMLabel defining constrained points 812b278463cSMatthew G. Knepley . numids - The number of DMLabel ids for constrained points 813b278463cSMatthew G. Knepley . ids - An array of ids for constrained points 814b278463cSMatthew G. Knepley . func - A pointwise function giving boundary values 815b278463cSMatthew G. Knepley - ctx - An optional user context for bcFunc 816b278463cSMatthew G. Knepley 817b278463cSMatthew G. Knepley Output Parameter: 818b278463cSMatthew G. Knepley . locX - A local vector to receives the boundary values 819b278463cSMatthew G. Knepley 820b278463cSMatthew G. Knepley Note: This implementation currently ignores the numcomps/comps argument from DMAddBoundary() 821b278463cSMatthew G. Knepley 822b278463cSMatthew G. Knepley Level: developer 823b278463cSMatthew G. Knepley 824b278463cSMatthew G. Knepley .seealso: DMPlexInsertBoundaryValuesEssential(), DMPlexInsertBoundaryValuesEssentialField(), DMAddBoundary() 825b278463cSMatthew G. Knepley @*/ 8261c531cf8SMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, PetscInt field, PetscInt Nc, const PetscInt comps[], DMLabel label, PetscInt numids, const PetscInt ids[], 827b278463cSMatthew G. Knepley PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 828d7ddef95SMatthew G. Knepley { 82961f58d28SMatthew G. Knepley PetscDS prob; 830da97024aSMatthew G. Knepley PetscSF sf; 831d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 83220369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 833da97024aSMatthew G. Knepley const PetscInt *leaves; 834d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 835520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 836e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 837d7ddef95SMatthew G. Knepley 838d7ddef95SMatthew G. Knepley PetscFunctionBegin; 839da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 840da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 841da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 842d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 843d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 84461f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 845d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 846d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 84720369375SToby Isaac if (cellGeometry) { 848d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 849d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 85020369375SToby Isaac } 851d7ddef95SMatthew G. Knepley if (Grad) { 852c0a6632aSMatthew G. Knepley PetscFV fv; 853c0a6632aSMatthew G. Knepley 854c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 855d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 856d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 857d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 85869291d52SBarry Smith ierr = DMGetWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 859d7ddef95SMatthew G. Knepley } 860d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 861d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 862d7ddef95SMatthew G. Knepley IS faceIS; 863d7ddef95SMatthew G. Knepley const PetscInt *faces; 864d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 865d7ddef95SMatthew G. Knepley 866d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 867d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 868d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 869d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 870d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 871d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 872640bce14SSatish Balay PetscFVFaceGeom *fg; 873d7ddef95SMatthew G. Knepley 874d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 875da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 876da97024aSMatthew G. Knepley if (loc >= 0) continue; 877d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 878d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 879d7ddef95SMatthew G. Knepley if (Grad) { 880640bce14SSatish Balay PetscFVCellGeom *cg; 881640bce14SSatish Balay PetscScalar *cx, *cgrad; 882d7ddef95SMatthew G. Knepley PetscScalar *xG; 883d7ddef95SMatthew G. Knepley PetscReal dx[3]; 884d7ddef95SMatthew G. Knepley PetscInt d; 885d7ddef95SMatthew G. Knepley 886d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 887d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 888d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 889520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 890d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 891d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 892e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 893e735a8a9SMatthew G. Knepley if (ierru) { 894e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 895e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 896e735a8a9SMatthew G. Knepley goto cleanup; 897e735a8a9SMatthew G. Knepley } 898d7ddef95SMatthew G. Knepley } else { 899640bce14SSatish Balay PetscScalar *xI; 900d7ddef95SMatthew G. Knepley PetscScalar *xG; 901d7ddef95SMatthew G. Knepley 902d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 903520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 904e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 905e735a8a9SMatthew G. Knepley if (ierru) { 906e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 907e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 908e735a8a9SMatthew G. Knepley goto cleanup; 909e735a8a9SMatthew G. Knepley } 910d7ddef95SMatthew G. Knepley } 911d7ddef95SMatthew G. Knepley } 912d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 913d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 914d7ddef95SMatthew G. Knepley } 915e735a8a9SMatthew G. Knepley cleanup: 916d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 917d7ddef95SMatthew G. Knepley if (Grad) { 91869291d52SBarry Smith ierr = DMRestoreWorkArray(dm, pdim, MPIU_SCALAR, &fx);CHKERRQ(ierr); 919d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 920d7ddef95SMatthew G. Knepley } 921e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 922d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 923e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 924d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 925d7ddef95SMatthew G. Knepley } 926d7ddef95SMatthew G. Knepley 927f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 928d7ddef95SMatthew G. Knepley { 929e5e52638SMatthew G. Knepley PetscDS prob; 930d7ddef95SMatthew G. Knepley PetscInt numBd, b; 93155f2e967SMatthew G. Knepley PetscErrorCode ierr; 93255f2e967SMatthew G. Knepley 93355f2e967SMatthew G. Knepley PetscFunctionBegin; 934e5e52638SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 935e5e52638SMatthew G. Knepley ierr = PetscDSGetNumBoundary(prob, &numBd);CHKERRQ(ierr); 93655f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 937f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 938648eda8cSMatthew G. Knepley const char *name, *labelname; 939d7ddef95SMatthew G. Knepley DMLabel label; 9401c531cf8SMatthew G. Knepley PetscInt field, Nc; 9411c531cf8SMatthew G. Knepley const PetscInt *comps; 942d7ddef95SMatthew G. Knepley PetscObject obj; 943d7ddef95SMatthew G. Knepley PetscClassId id; 944a30ec4eaSSatish Balay void (*func)(void); 945d7ddef95SMatthew G. Knepley PetscInt numids; 946d7ddef95SMatthew G. Knepley const PetscInt *ids; 94755f2e967SMatthew G. Knepley void *ctx; 94855f2e967SMatthew G. Knepley 949648eda8cSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, &name, &labelname, &field, &Nc, &comps, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 950f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 951c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 952648eda8cSMatthew G. Knepley if (!label) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONGSTATE, "Label %s for boundary condition %s does not exist in the DM", labelname, name); 95344a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 954d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 955d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 956c60e475cSMatthew G. Knepley switch (type) { 957c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 958c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 959092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9601c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssential(dm, time, field, Nc, comps, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 961092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 962c60e475cSMatthew G. Knepley break; 963c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 964c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 9651c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesEssentialField(dm, time, locX, field, Nc, comps, label, numids, ids, 966b278463cSMatthew G. Knepley (void (*)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 967c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 96897b6e6e8SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 969c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 970c60e475cSMatthew G. Knepley break; 971c60e475cSMatthew G. Knepley default: break; 972c60e475cSMatthew G. Knepley } 973d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 97443ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 9751c531cf8SMatthew G. Knepley ierr = DMPlexInsertBoundaryValuesRiemann(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, field, Nc, comps, label, numids, ids, 976b278463cSMatthew G. Knepley (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 977d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 97855f2e967SMatthew G. Knepley } 97955f2e967SMatthew G. Knepley PetscFunctionReturn(0); 98055f2e967SMatthew G. Knepley } 98155f2e967SMatthew G. Knepley 982f1d73a7aSMatthew G. Knepley /*@ 983f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 984f1d73a7aSMatthew G. Knepley 985f1d73a7aSMatthew G. Knepley Input Parameters: 986f1d73a7aSMatthew G. Knepley + dm - The DM 987f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 988f1d73a7aSMatthew G. Knepley . time - The time 989f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 990f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 991f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 992f1d73a7aSMatthew G. Knepley 993f1d73a7aSMatthew G. Knepley Output Parameters: 994f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 995f1d73a7aSMatthew G. Knepley 996f1d73a7aSMatthew G. Knepley Level: developer 997f1d73a7aSMatthew G. Knepley 998f1d73a7aSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 999f1d73a7aSMatthew G. Knepley @*/ 1000f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 1001f1d73a7aSMatthew G. Knepley { 1002f1d73a7aSMatthew G. Knepley PetscErrorCode ierr; 1003f1d73a7aSMatthew G. Knepley 1004f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 1005f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1006f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 1007f1d73a7aSMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 1008f1d73a7aSMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 1009f1d73a7aSMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 1010f1d73a7aSMatthew G. Knepley ierr = PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM));CHKERRQ(ierr); 1011f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 1012f1d73a7aSMatthew G. Knepley } 1013f1d73a7aSMatthew G. Knepley 10140709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 1015cb1e1211SMatthew G Knepley { 1016574a98acSMatthew G. Knepley Vec localX; 1017574a98acSMatthew G. Knepley PetscErrorCode ierr; 1018574a98acSMatthew G. Knepley 1019574a98acSMatthew G. Knepley PetscFunctionBegin; 1020574a98acSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 10215d42b983SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, time, NULL, NULL, NULL);CHKERRQ(ierr); 1022574a98acSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1023574a98acSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1024574a98acSMatthew G. Knepley ierr = DMPlexComputeL2DiffLocal(dm, time, funcs, ctxs, localX, diff);CHKERRQ(ierr); 1025574a98acSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1026574a98acSMatthew G. Knepley PetscFunctionReturn(0); 1027574a98acSMatthew G. Knepley } 1028574a98acSMatthew G. Knepley 1029574a98acSMatthew G. Knepley /*@C 1030ca3d3a14SMatthew G. Knepley DMComputeL2DiffLocal - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 1031574a98acSMatthew G. Knepley 1032574a98acSMatthew G. Knepley Input Parameters: 1033574a98acSMatthew G. Knepley + dm - The DM 1034574a98acSMatthew G. Knepley . time - The time 1035574a98acSMatthew G. Knepley . funcs - The functions to evaluate for each field component 1036574a98acSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1037574a98acSMatthew G. Knepley - localX - The coefficient vector u_h, a local vector 1038574a98acSMatthew G. Knepley 1039574a98acSMatthew G. Knepley Output Parameter: 1040574a98acSMatthew G. Knepley . diff - The diff ||u - u_h||_2 1041574a98acSMatthew G. Knepley 1042574a98acSMatthew G. Knepley Level: developer 1043574a98acSMatthew G. Knepley 1044574a98acSMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2FieldDiff(), DMComputeL2GradientDiff() 1045574a98acSMatthew G. Knepley @*/ 1046574a98acSMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec localX, PetscReal *diff) 1047574a98acSMatthew G. Knepley { 10480f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1049ca3d3a14SMatthew G. Knepley DM tdm; 1050ca3d3a14SMatthew G. Knepley Vec tv; 1051cb1e1211SMatthew G Knepley PetscSection section; 1052c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 105315496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 1054ca3d3a14SMatthew G. Knepley PetscReal *coords, *gcoords, *detJ, *J; 1055cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 10567318780aSToby Isaac const PetscReal *quadWeights; 1057aed3cbd0SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cellHeight, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1058ca3d3a14SMatthew G. Knepley PetscBool transform; 1059cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1060cb1e1211SMatthew G Knepley 1061cb1e1211SMatthew G Knepley PetscFunctionBegin; 1062c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 10637318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1064e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 1065cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1066ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1067ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1068ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1069cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 107015496722SMatthew G. Knepley PetscObject obj; 107115496722SMatthew G. Knepley PetscClassId id; 1072c5bbbd5bSMatthew G. Knepley PetscInt Nc; 1073c5bbbd5bSMatthew G. Knepley 107444a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 107515496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 107615496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 107715496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 107815496722SMatthew G. Knepley 10790f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 10800f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 108115496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 108215496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 108315496722SMatthew G. Knepley 108415496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 108515496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 108615496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1087c5bbbd5bSMatthew G. Knepley numComponents += Nc; 1088cb1e1211SMatthew G Knepley } 10899c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 1090beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 10917318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 1092aed3cbd0SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1093aed3cbd0SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 10949ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 10959ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1096cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 1097a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 1098cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 10999c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1100cb1e1211SMatthew G Knepley 11017318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 1102cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1103cb1e1211SMatthew G Knepley 110415496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 110515496722SMatthew G. Knepley PetscObject obj; 110615496722SMatthew G. Knepley PetscClassId id; 1107c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 110815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1109cb1e1211SMatthew G Knepley 111044a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 111115496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 111215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 111315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 111415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1115cb1e1211SMatthew G Knepley if (debug) { 1116cb1e1211SMatthew G Knepley char title[1024]; 1117cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 11184c848028SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1119cb1e1211SMatthew G Knepley } 11207318780aSToby Isaac for (q = 0; q < Nq; ++q) { 11217318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q); 1122ca3d3a14SMatthew G. Knepley if (transform) {gcoords = &coords[coordDim*Nq]; 1123ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);} 1124ca3d3a14SMatthew G. Knepley else {gcoords = &coords[coordDim*q];} 1125ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); 1126e735a8a9SMatthew G. Knepley if (ierr) { 1127e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1128e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1129e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 11307318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 1131e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1132e735a8a9SMatthew G. Knepley } 1133ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 113415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 113515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 113615496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 113715496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1138beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1139beaa55a6SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);} 1140beaa55a6SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]; 1141cb1e1211SMatthew G Knepley } 1142cb1e1211SMatthew G Knepley } 11439c3cf19fSMatthew G. Knepley fieldOffset += Nb; 1144beaa55a6SMatthew G. Knepley qc += Nc; 1145cb1e1211SMatthew G Knepley } 1146cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1147cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 1148cb1e1211SMatthew G Knepley localDiff += elemDiff; 1149cb1e1211SMatthew G Knepley } 11507318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 1151b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 1152cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 1153cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1154cb1e1211SMatthew G Knepley } 1155cb1e1211SMatthew G Knepley 1156b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 1157cb1e1211SMatthew G Knepley { 11580f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1159ca3d3a14SMatthew G. Knepley DM tdm; 1160cb1e1211SMatthew G Knepley PetscSection section; 116140e14135SMatthew G. Knepley PetscQuadrature quad; 1162ca3d3a14SMatthew G. Knepley Vec localX, tv; 11639c3cf19fSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 11649c3cf19fSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 1165ca3d3a14SMatthew G. Knepley PetscReal *coords, *gcoords, *realSpaceDer, *J, *invJ, *detJ; 116640e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 11679c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, qNc = 0, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1168ca3d3a14SMatthew G. Knepley PetscBool transform; 1169cb1e1211SMatthew G Knepley PetscErrorCode ierr; 1170cb1e1211SMatthew G Knepley 1171cb1e1211SMatthew G Knepley PetscFunctionBegin; 1172c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11737318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1174e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 117540e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 117640e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 117740e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 117840e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1179ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1180ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1181ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 1182652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 11830f2d7e86SMatthew G. Knepley PetscFE fe; 118440e14135SMatthew G. Knepley PetscInt Nc; 1185652b88e8SMatthew G. Knepley 118644a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 11870f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 11880f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 118940e14135SMatthew G. Knepley numComponents += Nc; 1190652b88e8SMatthew G. Knepley } 11919c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1192beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 11934d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 11949c3cf19fSMatthew G. Knepley ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,numComponents,&interpolant,Nq,&detJ);CHKERRQ(ierr); 119540e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 11969ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 11979ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 119840e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 119940e14135SMatthew G. Knepley PetscScalar *x = NULL; 120040e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 12019c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1202652b88e8SMatthew G. Knepley 12037318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr); 120440e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 120540e14135SMatthew G. Knepley 12069c3cf19fSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 12070f2d7e86SMatthew G. Knepley PetscFE fe; 120851259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 120940e14135SMatthew G. Knepley PetscReal *basisDer; 12109c3cf19fSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 121140e14135SMatthew G. Knepley 121244a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, (PetscObject *) &fe);CHKERRQ(ierr); 12130f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 12149c3cf19fSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 12150f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 121640e14135SMatthew G. Knepley if (debug) { 121740e14135SMatthew G. Knepley char title[1024]; 121840e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 12199c3cf19fSMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 1220652b88e8SMatthew G. Knepley } 12219c3cf19fSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 12227318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 1223ca3d3a14SMatthew G. Knepley if (transform) {gcoords = &coords[coordDim*Nq]; 1224ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);} 1225ca3d3a14SMatthew G. Knepley else {gcoords = &coords[coordDim*q];} 12267318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx); 1227e735a8a9SMatthew G. Knepley if (ierr) { 1228e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1229e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1230e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 12319c3cf19fSMatthew G. Knepley ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolant,detJ);CHKERRQ(ierr2); 1232e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1233e735a8a9SMatthew G. Knepley } 1234ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 12359c3cf19fSMatthew G. Knepley ierr = PetscFEInterpolateGradient_Static(fe, &x[fieldOffset], coordDim, invJ, n, q, interpolant);CHKERRQ(ierr); 12369c3cf19fSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1237beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1238beaa55a6SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);} 1239beaa55a6SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]; 124040e14135SMatthew G. Knepley } 124140e14135SMatthew G. Knepley } 12429c3cf19fSMatthew G. Knepley fieldOffset += Nb; 12439c3cf19fSMatthew G. Knepley qc += Nc; 124440e14135SMatthew G. Knepley } 124540e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 124640e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 124740e14135SMatthew G. Knepley localDiff += elemDiff; 124840e14135SMatthew G. Knepley } 12499c3cf19fSMatthew G. Knepley ierr = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolant,detJ);CHKERRQ(ierr); 125040e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1251b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 125240e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 1253cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1254cb1e1211SMatthew G Knepley } 1255cb1e1211SMatthew G Knepley 1256c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 125773d901b8SMatthew G. Knepley { 12580f09c10fSMatthew G. Knepley const PetscInt debug = ((DM_Plex*)dm->data)->printL2; 1259ca3d3a14SMatthew G. Knepley DM tdm; 126073d901b8SMatthew G. Knepley PetscSection section; 126173d901b8SMatthew G. Knepley PetscQuadrature quad; 1262ca3d3a14SMatthew G. Knepley Vec localX, tv; 126315496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 1264ca3d3a14SMatthew G. Knepley PetscReal *coords, *gcoords, *detJ, *J; 126573d901b8SMatthew G. Knepley PetscReal *localDiff; 126615496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 12679c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1268ca3d3a14SMatthew G. Knepley PetscBool transform; 126973d901b8SMatthew G. Knepley PetscErrorCode ierr; 127073d901b8SMatthew G. Knepley 127173d901b8SMatthew G. Knepley PetscFunctionBegin; 1272c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 12737318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1274e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 127573d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 127673d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1277ca3d3a14SMatthew G. Knepley ierr = VecSet(localX, 0.0);CHKERRQ(ierr); 127873d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 127973d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1280ca3d3a14SMatthew G. Knepley ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1281ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformDM_Internal(dm, &tdm);CHKERRQ(ierr); 1282ca3d3a14SMatthew G. Knepley ierr = DMGetBasisTransformVec_Internal(dm, &tv);CHKERRQ(ierr); 1283ca3d3a14SMatthew G. Knepley ierr = DMHasBasisTransform(dm, &transform);CHKERRQ(ierr); 128473d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 128515496722SMatthew G. Knepley PetscObject obj; 128615496722SMatthew G. Knepley PetscClassId id; 128773d901b8SMatthew G. Knepley PetscInt Nc; 128873d901b8SMatthew G. Knepley 128944a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 129015496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 129115496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 129215496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 129315496722SMatthew G. Knepley 12940f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 12950f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 129615496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 129715496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 129815496722SMatthew G. Knepley 129915496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 130015496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 130115496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 130273d901b8SMatthew G. Knepley numComponents += Nc; 130373d901b8SMatthew G. Knepley } 13049c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1305beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 1306ca3d3a14SMatthew G. Knepley ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*(Nq+1),&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 130773d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 13089ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 13099ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 131073d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 131173d901b8SMatthew G. Knepley PetscScalar *x = NULL; 13129c3cf19fSMatthew G. Knepley PetscInt qc = 0; 131373d901b8SMatthew G. Knepley 13147318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 131573d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 131673d901b8SMatthew G. Knepley 131715496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 131815496722SMatthew G. Knepley PetscObject obj; 131915496722SMatthew G. Knepley PetscClassId id; 132073d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 132115496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 132273d901b8SMatthew G. Knepley 132315496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 132415496722SMatthew G. Knepley 132544a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 132615496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 132715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 132815496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 132915496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 133073d901b8SMatthew G. Knepley if (debug) { 133173d901b8SMatthew G. Knepley char title[1024]; 133273d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 1333ca3d3a14SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb, &x[fieldOffset]);CHKERRQ(ierr); 133473d901b8SMatthew G. Knepley } 13357318780aSToby Isaac for (q = 0; q < Nq; ++q) { 13367318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q); 1337ca3d3a14SMatthew G. Knepley if (transform) {gcoords = &coords[coordDim*Nq]; 1338ab6a9622SMatthew G. Knepley ierr = DMPlexBasisTransformApplyReal_Internal(dm, &coords[coordDim*q], PETSC_TRUE, coordDim, &coords[coordDim*q], gcoords, dm->transformCtx);CHKERRQ(ierr);} 1339ca3d3a14SMatthew G. Knepley else {gcoords = &coords[coordDim*q];} 1340ca3d3a14SMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, gcoords, numFields, funcVal, ctx); 1341e735a8a9SMatthew G. Knepley if (ierr) { 1342e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1343e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 1344e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 13457318780aSToby Isaac ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 1346e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1347e735a8a9SMatthew G. Knepley } 1348ca3d3a14SMatthew G. Knepley if (transform) {ierr = DMPlexBasisTransformApply_Internal(dm, &coords[coordDim*q], PETSC_FALSE, Nc, funcVal, funcVal, dm->transformCtx);CHKERRQ(ierr);} 134915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 135015496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 135115496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 135215496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1353beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1354ca3d3a14SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[coordDim*q] : 0., coordDim > 1 ? coords[coordDim*q+1] : 0., coordDim > 2 ? coords[coordDim*q+2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]);CHKERRQ(ierr);} 1355beaa55a6SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]; 135673d901b8SMatthew G. Knepley } 135773d901b8SMatthew G. Knepley } 1358beaa55a6SMatthew G. Knepley fieldOffset += Nb; 13599c3cf19fSMatthew G. Knepley qc += Nc; 136073d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 1361ca3d3a14SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d cum diff %g\n", c, field, localDiff[field]);CHKERRQ(ierr);} 136273d901b8SMatthew G. Knepley } 136373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 136473d901b8SMatthew G. Knepley } 136573d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1366b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 136773d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 13687318780aSToby Isaac ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 136973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 137073d901b8SMatthew G. Knepley } 137173d901b8SMatthew G. Knepley 1372e729f68cSMatthew G. Knepley /*@C 1373e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 1374e729f68cSMatthew G. Knepley 1375e729f68cSMatthew G. Knepley Input Parameters: 1376e729f68cSMatthew G. Knepley + dm - The DM 13770163fd50SMatthew G. Knepley . time - The time 1378ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 1379e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 1380e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 1381e729f68cSMatthew G. Knepley 1382e729f68cSMatthew G. Knepley Output Parameter: 1383e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 1384e729f68cSMatthew G. Knepley 1385e729f68cSMatthew G. Knepley Level: developer 1386e729f68cSMatthew G. Knepley 1387b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 1388e729f68cSMatthew G. Knepley @*/ 13890163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 1390e729f68cSMatthew G. Knepley { 1391e729f68cSMatthew G. Knepley PetscSection section; 1392e729f68cSMatthew G. Knepley PetscQuadrature quad; 1393e729f68cSMatthew G. Knepley Vec localX; 1394e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 13957318780aSToby Isaac PetscReal *coords, *detJ, *J; 1396e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 13979c3cf19fSMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 1398e729f68cSMatthew G. Knepley PetscErrorCode ierr; 1399e729f68cSMatthew G. Knepley 1400e729f68cSMatthew G. Knepley PetscFunctionBegin; 1401e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 1402e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 14037318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1404e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 1405e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 1406e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 1407bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 1408e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1409e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 1410e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 1411e729f68cSMatthew G. Knepley PetscObject obj; 1412e729f68cSMatthew G. Knepley PetscClassId id; 1413e729f68cSMatthew G. Knepley PetscInt Nc; 1414e729f68cSMatthew G. Knepley 141544a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1416e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1417e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1418e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1419e729f68cSMatthew G. Knepley 1420e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 1421e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 1422e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1423e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 1424e729f68cSMatthew G. Knepley 1425e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 1426e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 1427e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1428e729f68cSMatthew G. Knepley numComponents += Nc; 1429e729f68cSMatthew G. Knepley } 14309c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 1431beaa55a6SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 14327318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 1433e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1434e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 1435e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1436e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1437e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 14386f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 14399c3cf19fSMatthew G. Knepley PetscInt qc = 0; 1440e729f68cSMatthew G. Knepley 14417318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 1442e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 1443e729f68cSMatthew G. Knepley 1444e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 1445e729f68cSMatthew G. Knepley PetscObject obj; 1446e729f68cSMatthew G. Knepley PetscClassId id; 1447e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 1448e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 1449e729f68cSMatthew G. Knepley 145044a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 1451e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1452e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 1453e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 1454e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 145523f34ed2SToby Isaac if (funcs[field]) { 14567318780aSToby Isaac for (q = 0; q < Nq; ++q) { 14577f79407eSBarry Smith if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)detJ[q], c, q); 1458274e8aaeSMatthew G. Knepley ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], Nc, funcVal, ctx); 1459e735a8a9SMatthew G. Knepley if (ierr) { 1460e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 1461e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 14627f79407eSBarry Smith ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 1463e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 1464e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 1465e735a8a9SMatthew G. Knepley } 1466e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1467e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 1468e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 1469e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 1470beaa55a6SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+(qNc == 1 ? 0 : qc+fc)]; 1471beaa55a6SMatthew G. Knepley elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*wt*detJ[q]; 1472e729f68cSMatthew G. Knepley } 1473e729f68cSMatthew G. Knepley } 147423f34ed2SToby Isaac } 1475beaa55a6SMatthew G. Knepley fieldOffset += Nb; 14769c3cf19fSMatthew G. Knepley qc += Nc; 1477e729f68cSMatthew G. Knepley } 1478e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 147923f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 1480e729f68cSMatthew G. Knepley } 14817318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 1482e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1483e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 1484e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 1485e729f68cSMatthew G. Knepley } 1486e729f68cSMatthew G. Knepley 14871555c271SMatthew G. Knepley /*@C 14881555c271SMatthew G. Knepley DMPlexComputeGradientClementInterpolant - This function computes the L2 projection of the cellwise gradient of a function u onto P1, and stores it in a Vec. 14891555c271SMatthew G. Knepley 14901555c271SMatthew G. Knepley Input Parameters: 14911555c271SMatthew G. Knepley + dm - The DM 14921555c271SMatthew G. Knepley - LocX - The coefficient vector u_h 14931555c271SMatthew G. Knepley 14941555c271SMatthew G. Knepley Output Parameter: 14951555c271SMatthew G. Knepley . locC - A Vec which holds the Clement interpolant of the gradient 14961555c271SMatthew G. Knepley 149795452b02SPatrick Sanan Notes: 149895452b02SPatrick Sanan Add citation to (Clement, 1975) and definition of the interpolant 14991555c271SMatthew G. Knepley \nabla u_h(v_i) = \sum_{T_i \in support(v_i)} |T_i| \nabla u_h(T_i) / \sum_{T_i \in support(v_i)} |T_i| where |T_i| is the cell volume 15001555c271SMatthew G. Knepley 15011555c271SMatthew G. Knepley Level: developer 15021555c271SMatthew G. Knepley 15031555c271SMatthew G. Knepley .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 15041555c271SMatthew G. Knepley @*/ 15051555c271SMatthew G. Knepley PetscErrorCode DMPlexComputeGradientClementInterpolant(DM dm, Vec locX, Vec locC) 15061555c271SMatthew G. Knepley { 1507db1066baSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1508db1066baSMatthew G. Knepley PetscInt debug = mesh->printFEM; 15091555c271SMatthew G. Knepley DM dmC; 15101555c271SMatthew G. Knepley PetscSection section; 15111555c271SMatthew G. Knepley PetscQuadrature quad; 15121555c271SMatthew G. Knepley PetscScalar *interpolant, *gradsum; 15131555c271SMatthew G. Knepley PetscReal *coords, *detJ, *J, *invJ; 15141555c271SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 15151555c271SMatthew G. Knepley PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, cEndInterior, vStart, vEnd, v, field, fieldOffset; 15161555c271SMatthew G. Knepley PetscErrorCode ierr; 15171555c271SMatthew G. Knepley 15181555c271SMatthew G. Knepley PetscFunctionBegin; 15191555c271SMatthew G. Knepley ierr = VecGetDM(locC, &dmC);CHKERRQ(ierr); 15201555c271SMatthew G. Knepley ierr = VecSet(locC, 0.0);CHKERRQ(ierr); 15211555c271SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 15221555c271SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 1523e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 15241555c271SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 15251555c271SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 15261555c271SMatthew G. Knepley PetscObject obj; 15271555c271SMatthew G. Knepley PetscClassId id; 15281555c271SMatthew G. Knepley PetscInt Nc; 15291555c271SMatthew G. Knepley 153044a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 15311555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 15321555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 15331555c271SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 15341555c271SMatthew G. Knepley 15351555c271SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 15361555c271SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 15371555c271SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 15381555c271SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 15391555c271SMatthew G. Knepley 15401555c271SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 15411555c271SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 15421555c271SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 15431555c271SMatthew G. Knepley numComponents += Nc; 15441555c271SMatthew G. Knepley } 15451555c271SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 15461555c271SMatthew G. Knepley if ((qNc != 1) && (qNc != numComponents)) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_SIZ, "Quadrature components %D != %D field components", qNc, numComponents); 15471555c271SMatthew G. Knepley ierr = PetscMalloc6(coordDim*numComponents*2,&gradsum,coordDim*numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ);CHKERRQ(ierr); 15481555c271SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 15491555c271SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 15501555c271SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 15511555c271SMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 15521555c271SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 15531555c271SMatthew G. Knepley PetscScalar volsum = 0.0; 15541555c271SMatthew G. Knepley PetscInt *star = NULL; 15551555c271SMatthew G. Knepley PetscInt starSize, st, d, fc; 15561555c271SMatthew G. Knepley 15571555c271SMatthew G. Knepley ierr = PetscMemzero(gradsum, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr); 15581555c271SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 15591555c271SMatthew G. Knepley for (st = 0; st < starSize*2; st += 2) { 15601555c271SMatthew G. Knepley const PetscInt cell = star[st]; 15611555c271SMatthew G. Knepley PetscScalar *grad = &gradsum[coordDim*numComponents]; 15621555c271SMatthew G. Knepley PetscScalar *x = NULL; 15631555c271SMatthew G. Knepley PetscReal vol = 0.0; 15641555c271SMatthew G. Knepley 15651555c271SMatthew G. Knepley if ((cell < cStart) || (cell >= cEnd)) continue; 15661555c271SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, J, invJ, detJ);CHKERRQ(ierr); 15671555c271SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 15681555c271SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 15691555c271SMatthew G. Knepley PetscObject obj; 15701555c271SMatthew G. Knepley PetscClassId id; 15711555c271SMatthew G. Knepley PetscInt Nb, Nc, q, qc = 0; 15721555c271SMatthew G. Knepley 15731555c271SMatthew G. Knepley ierr = PetscMemzero(grad, coordDim*numComponents * sizeof(PetscScalar));CHKERRQ(ierr); 157444a7f3ddSMatthew G. Knepley ierr = DMGetField(dm, field, NULL, &obj);CHKERRQ(ierr); 15751555c271SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 15761555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 15771555c271SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 15781555c271SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 15791555c271SMatthew G. Knepley for (q = 0; q < Nq; ++q) { 15801555c271SMatthew G. Knepley if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", (double)detJ[q], cell, q); 15811555c271SMatthew G. Knepley if (ierr) { 15821555c271SMatthew G. Knepley PetscErrorCode ierr2; 15831555c271SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr2); 15841555c271SMatthew G. Knepley ierr2 = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr2); 15851555c271SMatthew G. Knepley ierr2 = PetscFree4(interpolant,coords,detJ,J);CHKERRQ(ierr2); 15861555c271SMatthew G. Knepley CHKERRQ(ierr); 15871555c271SMatthew G. Knepley } 15881555c271SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolateGradient_Static((PetscFE) obj, &x[fieldOffset], coordDim, invJ, NULL, q, interpolant);CHKERRQ(ierr);} 15891555c271SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 15901555c271SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 15911555c271SMatthew G. Knepley const PetscReal wt = quadWeights[q*qNc+qc+fc]; 15921555c271SMatthew G. Knepley 15931555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) grad[fc*coordDim+d] += interpolant[fc*dim+d]*wt*detJ[q]; 15941555c271SMatthew G. Knepley } 15951555c271SMatthew G. Knepley vol += quadWeights[q*qNc]*detJ[q]; 15961555c271SMatthew G. Knepley } 15971555c271SMatthew G. Knepley fieldOffset += Nb; 15981555c271SMatthew G. Knepley qc += Nc; 15991555c271SMatthew G. Knepley } 16001555c271SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x);CHKERRQ(ierr); 1601f8527842SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 1602f8527842SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 1603f8527842SMatthew G. Knepley gradsum[fc*coordDim+d] += grad[fc*coordDim+d]; 1604f8527842SMatthew G. Knepley } 1605f8527842SMatthew G. Knepley } 1606f8527842SMatthew G. Knepley volsum += vol; 1607db1066baSMatthew G. Knepley if (debug) { 16086d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "Cell %D gradient: [", cell);CHKERRQ(ierr); 16091555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16101555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) { 16111555c271SMatthew G. Knepley if (fc || d > 0) {ierr = PetscPrintf(PETSC_COMM_SELF, ", ");CHKERRQ(ierr);} 16126d20ae03SJed Brown ierr = PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc*coordDim+d]));CHKERRQ(ierr); 16131555c271SMatthew G. Knepley } 16141555c271SMatthew G. Knepley } 16151555c271SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "]\n");CHKERRQ(ierr); 1616db1066baSMatthew G. Knepley } 16171555c271SMatthew G. Knepley } 16181555c271SMatthew G. Knepley for (fc = 0; fc < numComponents; ++fc) { 16191555c271SMatthew G. Knepley for (d = 0; d < coordDim; ++d) gradsum[fc*coordDim+d] /= volsum; 16201555c271SMatthew G. Knepley } 16211555c271SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 16221555c271SMatthew G. Knepley ierr = DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES);CHKERRQ(ierr); 16231555c271SMatthew G. Knepley } 16241555c271SMatthew G. Knepley ierr = PetscFree6(gradsum,interpolant,coords,detJ,J,invJ);CHKERRQ(ierr); 16251555c271SMatthew G. Knepley PetscFunctionReturn(0); 16261555c271SMatthew G. Knepley } 16271555c271SMatthew G. Knepley 1628338f77d5SMatthew G. Knepley static PetscErrorCode DMPlexComputeIntegral_Internal(DM dm, Vec X, PetscInt cStart, PetscInt cEnd, PetscScalar *cintegral, void *user) 162973d901b8SMatthew G. Knepley { 1630338f77d5SMatthew G. Knepley DM dmAux = NULL; 163161aaff12SToby Isaac PetscDS prob, probAux = NULL; 163273d901b8SMatthew G. Knepley PetscSection section, sectionAux; 1633338f77d5SMatthew G. Knepley Vec locX, locA; 1634c330f8ffSToby Isaac PetscInt dim, numCells = cEnd - cStart, c, f; 1635c330f8ffSToby Isaac PetscBool useFVM = PETSC_FALSE; 1636338f77d5SMatthew G. Knepley /* DS */ 1637338f77d5SMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x, numConstants; 1638338f77d5SMatthew G. Knepley PetscInt NfAux, totDimAux, *aOff; 1639338f77d5SMatthew G. Knepley PetscScalar *u, *a; 1640338f77d5SMatthew G. Knepley const PetscScalar *constants; 1641338f77d5SMatthew G. Knepley /* Geometry */ 1642c330f8ffSToby Isaac PetscFEGeom *cgeomFEM; 1643338f77d5SMatthew G. Knepley DM dmGrad; 1644c330f8ffSToby Isaac PetscQuadrature affineQuad = NULL; 1645338f77d5SMatthew G. Knepley Vec cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 1646b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 1647338f77d5SMatthew G. Knepley const PetscScalar *lgrad; 1648b7260050SToby Isaac PetscInt maxDegree; 1649c330f8ffSToby Isaac DMField coordField; 1650c330f8ffSToby Isaac IS cellIS; 165173d901b8SMatthew G. Knepley PetscErrorCode ierr; 165273d901b8SMatthew G. Knepley 165373d901b8SMatthew G. Knepley PetscFunctionBegin; 1654338f77d5SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 1655c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1656e87a4003SBarry Smith ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 165773d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 1658338f77d5SMatthew G. Knepley /* Determine which discretizations we have */ 1659b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1660b5a3613cSMatthew G. Knepley PetscObject obj; 1661b5a3613cSMatthew G. Knepley PetscClassId id; 1662b5a3613cSMatthew G. Knepley 1663b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1664b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1665338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) useFVM = PETSC_TRUE; 1666338f77d5SMatthew G. Knepley } 1667338f77d5SMatthew G. Knepley /* Get local solution with boundary values */ 1668338f77d5SMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 1669338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 1670338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1671338f77d5SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 1672338f77d5SMatthew G. Knepley /* Read DS information */ 1673338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 1674338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 1675338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 1676c330f8ffSToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF,numCells,cStart,1,&cellIS);CHKERRQ(ierr); 1677338f77d5SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 1678338f77d5SMatthew G. Knepley /* Read Auxiliary DS information */ 1679338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 1680338f77d5SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 1681338f77d5SMatthew G. Knepley if (dmAux) { 1682338f77d5SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 1683338f77d5SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 1684e87a4003SBarry Smith ierr = DMGetSection(dmAux, §ionAux);CHKERRQ(ierr); 1685338f77d5SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 1686338f77d5SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 1687338f77d5SMatthew G. Knepley } 1688338f77d5SMatthew G. Knepley /* Allocate data arrays */ 1689338f77d5SMatthew G. Knepley ierr = PetscCalloc1(numCells*totDim, &u);CHKERRQ(ierr); 1690338f77d5SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 1691338f77d5SMatthew G. Knepley /* Read out geometry */ 1692c330f8ffSToby Isaac ierr = DMGetCoordinateField(dm,&coordField);CHKERRQ(ierr); 1693b7260050SToby Isaac ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 1694b7260050SToby Isaac if (maxDegree <= 1) { 1695c330f8ffSToby Isaac ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 1696c330f8ffSToby Isaac if (affineQuad) { 1697c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1698338f77d5SMatthew G. Knepley } 1699b5a3613cSMatthew G. Knepley } 1700b5a3613cSMatthew G. Knepley if (useFVM) { 1701338f77d5SMatthew G. Knepley PetscFV fv = NULL; 1702b5a3613cSMatthew G. Knepley Vec grad; 1703b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 1704b5a3613cSMatthew G. Knepley PetscBool compGrad; 1705b5a3613cSMatthew G. Knepley 1706338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1707338f77d5SMatthew G. Knepley PetscObject obj; 1708338f77d5SMatthew G. Knepley PetscClassId id; 1709338f77d5SMatthew G. Knepley 1710338f77d5SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1711338f77d5SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1712338f77d5SMatthew G. Knepley if (id == PETSCFV_CLASSID) {fv = (PetscFV) obj; break;} 1713338f77d5SMatthew G. Knepley } 1714338f77d5SMatthew G. Knepley ierr = PetscFVGetComputeGradients(fv, &compGrad);CHKERRQ(ierr); 1715338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, PETSC_TRUE);CHKERRQ(ierr); 1716b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 1717338f77d5SMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fv, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 1718338f77d5SMatthew G. Knepley ierr = PetscFVSetComputeGradients(fv, compGrad);CHKERRQ(ierr); 1719b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1720b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 1721b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 1722b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1723338f77d5SMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fv, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, locX, grad);CHKERRQ(ierr); 1724b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 1725b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1726b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1727b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 1728b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 1729b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 1730338f77d5SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, locX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 1731b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1732b5a3613cSMatthew G. Knepley } 1733338f77d5SMatthew G. Knepley /* Read out data from inputs */ 173473d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 173573d901b8SMatthew G. Knepley PetscScalar *x = NULL; 173673d901b8SMatthew G. Knepley PetscInt i; 173773d901b8SMatthew G. Knepley 1738338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 17390f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 1740338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, c, NULL, &x);CHKERRQ(ierr); 174173d901b8SMatthew G. Knepley if (dmAux) { 1742338f77d5SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 17430f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 1744338f77d5SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, locA, c, NULL, &x);CHKERRQ(ierr); 174573d901b8SMatthew G. Knepley } 174673d901b8SMatthew G. Knepley } 1747338f77d5SMatthew G. Knepley /* Do integration for each field */ 174873d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1749c1f031eeSMatthew G. Knepley PetscObject obj; 1750c1f031eeSMatthew G. Knepley PetscClassId id; 1751c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 175273d901b8SMatthew G. Knepley 1753c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1754c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1755c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1756c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1757c1f031eeSMatthew G. Knepley PetscQuadrature q; 1758c330f8ffSToby Isaac PetscFEGeom *chunkGeom = NULL; 1759c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1760c1f031eeSMatthew G. Knepley 17610f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1762c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 17639c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1764c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1765c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 176673d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 17670f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 176873d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 176973d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 177073d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 177173d901b8SMatthew G. Knepley offset = numCells - Nr; 1772c330f8ffSToby Isaac if (!affineQuad) { 1773c330f8ffSToby Isaac ierr = DMFieldCreateFEGeom(coordField,cellIS,q,PETSC_FALSE,&cgeomFEM);CHKERRQ(ierr); 1774c330f8ffSToby Isaac } 1775c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,0,offset,&chunkGeom);CHKERRQ(ierr); 1776c330f8ffSToby Isaac ierr = PetscFEIntegrate(fe, prob, f, Ne, chunkGeom, u, probAux, a, cintegral);CHKERRQ(ierr); 1777c330f8ffSToby Isaac ierr = PetscFEGeomGetChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 1778c330f8ffSToby Isaac ierr = PetscFEIntegrate(fe, prob, f, Nr, chunkGeom, &u[offset*totDim], probAux, &a[offset*totDimAux], &cintegral[offset*Nf]);CHKERRQ(ierr); 1779c330f8ffSToby Isaac ierr = PetscFEGeomRestoreChunk(cgeomFEM,offset,numCells,&chunkGeom);CHKERRQ(ierr); 1780c330f8ffSToby Isaac if (!affineQuad) { 1781c330f8ffSToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1782c330f8ffSToby Isaac } 1783c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1784c1f031eeSMatthew G. Knepley PetscInt foff; 1785420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1786b69edc29SMatthew G. Knepley PetscScalar lint; 1787c1f031eeSMatthew G. Knepley 1788c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1789c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1790c1f031eeSMatthew G. Knepley if (obj_func) { 1791c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1792b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1793b5a3613cSMatthew G. Knepley 1794b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1795338f77d5SMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, &a[totDimAux*c], NULL, NULL, 0.0, cgeomFVM[c].centroid, numConstants, constants, &lint); 1796338f77d5SMatthew G. Knepley cintegral[c*Nf+f] += PetscRealPart(lint)*cgeomFVM[c].volume; 179773d901b8SMatthew G. Knepley } 1798c1f031eeSMatthew G. Knepley } 1799c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1800c1f031eeSMatthew G. Knepley } 1801338f77d5SMatthew G. Knepley /* Cleanup data arrays */ 1802b5a3613cSMatthew G. Knepley if (useFVM) { 1803b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1804b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1805b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1806b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1807b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1808b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1809b5a3613cSMatthew G. Knepley } 181073d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 1811338f77d5SMatthew G. Knepley ierr = PetscFree(u);CHKERRQ(ierr); 1812338f77d5SMatthew G. Knepley /* Cleanup */ 1813f99c8401SToby Isaac if (affineQuad) { 1814f99c8401SToby Isaac ierr = PetscFEGeomDestroy(&cgeomFEM);CHKERRQ(ierr); 1815f99c8401SToby Isaac } 1816f99c8401SToby Isaac ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 1817c330f8ffSToby Isaac ierr = ISDestroy(&cellIS);CHKERRQ(ierr); 1818338f77d5SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 1819338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1820338f77d5SMatthew G. Knepley } 1821338f77d5SMatthew G. Knepley 1822338f77d5SMatthew G. Knepley /*@ 1823338f77d5SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the integral over the domain from the global input X using pointwise functions specified by the user 1824338f77d5SMatthew G. Knepley 1825338f77d5SMatthew G. Knepley Input Parameters: 1826338f77d5SMatthew G. Knepley + dm - The mesh 1827338f77d5SMatthew G. Knepley . X - Global input vector 1828338f77d5SMatthew G. Knepley - user - The user context 1829338f77d5SMatthew G. Knepley 1830338f77d5SMatthew G. Knepley Output Parameter: 1831338f77d5SMatthew G. Knepley . integral - Integral for each field 1832338f77d5SMatthew G. Knepley 1833338f77d5SMatthew G. Knepley Level: developer 1834338f77d5SMatthew G. Knepley 1835338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1836338f77d5SMatthew G. Knepley @*/ 1837b8feb594SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscScalar *integral, void *user) 1838338f77d5SMatthew G. Knepley { 1839338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1840b8feb594SMatthew G. Knepley PetscScalar *cintegral, *lintegral; 1841338f77d5SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell; 1842338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1843338f77d5SMatthew G. Knepley 1844338f77d5SMatthew G. Knepley PetscFunctionBegin; 1845338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1846338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1847338f77d5SMatthew G. Knepley PetscValidPointer(integral, 3); 1848338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1849338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1850338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1851338f77d5SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1852338f77d5SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr); 1853338f77d5SMatthew G. Knepley cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight]; 1854338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1855338f77d5SMatthew G. Knepley ierr = PetscCalloc2(Nf, &lintegral, (cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1856338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1857338f77d5SMatthew G. Knepley /* Sum up values */ 1858338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1859338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1860338f77d5SMatthew G. Knepley 1861338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1862b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) lintegral[f] += cintegral[c*Nf+f]; 1863338f77d5SMatthew G. Knepley } 1864b8feb594SMatthew G. Knepley ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_SCALAR, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 186573d901b8SMatthew G. Knepley if (mesh->printFEM) { 1866338f77d5SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Integral:");CHKERRQ(ierr); 1867b8feb594SMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", (double) PetscRealPart(integral[f]));CHKERRQ(ierr);} 186873d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 186973d901b8SMatthew G. Knepley } 1870338f77d5SMatthew G. Knepley ierr = PetscFree2(lintegral, cintegral);CHKERRQ(ierr); 1871338f77d5SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1872338f77d5SMatthew G. Knepley PetscFunctionReturn(0); 1873338f77d5SMatthew G. Knepley } 1874338f77d5SMatthew G. Knepley 1875338f77d5SMatthew G. Knepley /*@ 1876338f77d5SMatthew G. Knepley DMPlexComputeCellwiseIntegralFEM - Form the vector of cellwise integrals F from the global input X using pointwise functions specified by the user 1877338f77d5SMatthew G. Knepley 1878338f77d5SMatthew G. Knepley Input Parameters: 1879338f77d5SMatthew G. Knepley + dm - The mesh 1880338f77d5SMatthew G. Knepley . X - Global input vector 1881338f77d5SMatthew G. Knepley - user - The user context 1882338f77d5SMatthew G. Knepley 1883338f77d5SMatthew G. Knepley Output Parameter: 1884338f77d5SMatthew G. Knepley . integral - Cellwise integrals for each field 1885338f77d5SMatthew G. Knepley 1886338f77d5SMatthew G. Knepley Level: developer 1887338f77d5SMatthew G. Knepley 1888338f77d5SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 1889338f77d5SMatthew G. Knepley @*/ 1890338f77d5SMatthew G. Knepley PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM dm, Vec X, Vec F, void *user) 1891338f77d5SMatthew G. Knepley { 1892338f77d5SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 1893338f77d5SMatthew G. Knepley DM dmF; 1894338f77d5SMatthew G. Knepley PetscSection sectionF; 1895338f77d5SMatthew G. Knepley PetscScalar *cintegral, *af; 1896338f77d5SMatthew G. Knepley PetscInt Nf, f, cellHeight, cStart, cEnd, cEndInterior[4], cell; 1897338f77d5SMatthew G. Knepley PetscErrorCode ierr; 1898338f77d5SMatthew G. Knepley 1899338f77d5SMatthew G. Knepley PetscFunctionBegin; 1900338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1901338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 1902338f77d5SMatthew G. Knepley PetscValidHeaderSpecific(F, VEC_CLASSID, 3); 1903338f77d5SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 1904338f77d5SMatthew G. Knepley ierr = DMGetNumFields(dm, &Nf);CHKERRQ(ierr); 1905338f77d5SMatthew G. Knepley ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 1906338f77d5SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 1907338f77d5SMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior[0], &cEndInterior[1], &cEndInterior[2], &cEndInterior[3]);CHKERRQ(ierr); 1908338f77d5SMatthew G. Knepley cEnd = cEndInterior[cellHeight] < 0 ? cEnd : cEndInterior[cellHeight]; 1909338f77d5SMatthew G. Knepley /* TODO Introduce a loop over large chunks (right now this is a single chunk) */ 1910338f77d5SMatthew G. Knepley ierr = PetscCalloc1((cEnd-cStart)*Nf, &cintegral);CHKERRQ(ierr); 1911338f77d5SMatthew G. Knepley ierr = DMPlexComputeIntegral_Internal(dm, X, cStart, cEnd, cintegral, user);CHKERRQ(ierr); 1912338f77d5SMatthew G. Knepley /* Put values in F*/ 1913338f77d5SMatthew G. Knepley ierr = VecGetDM(F, &dmF);CHKERRQ(ierr); 1914e87a4003SBarry Smith ierr = DMGetSection(dmF, §ionF);CHKERRQ(ierr); 1915338f77d5SMatthew G. Knepley ierr = VecGetArray(F, &af);CHKERRQ(ierr); 1916338f77d5SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 1917338f77d5SMatthew G. Knepley const PetscInt c = cell - cStart; 1918338f77d5SMatthew G. Knepley PetscInt dof, off; 1919338f77d5SMatthew G. Knepley 1920338f77d5SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, "Cell Integral", Nf, &cintegral[c*Nf]);CHKERRQ(ierr);} 1921338f77d5SMatthew G. Knepley ierr = PetscSectionGetDof(sectionF, cell, &dof);CHKERRQ(ierr); 1922338f77d5SMatthew G. Knepley ierr = PetscSectionGetOffset(sectionF, cell, &off);CHKERRQ(ierr); 1923338f77d5SMatthew G. Knepley if (dof != Nf) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cell dofs %D != %D", dof, Nf); 1924338f77d5SMatthew G. Knepley for (f = 0; f < Nf; ++f) af[off+f] = cintegral[c*Nf+f]; 1925338f77d5SMatthew G. Knepley } 1926338f77d5SMatthew G. Knepley ierr = VecRestoreArray(F, &af);CHKERRQ(ierr); 1927338f77d5SMatthew G. Knepley ierr = PetscFree(cintegral);CHKERRQ(ierr); 1928c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 192973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 193073d901b8SMatthew G. Knepley } 193173d901b8SMatthew G. Knepley 19329b6f715bSMatthew G. Knepley static PetscErrorCode DMPlexComputeBdIntegral_Internal(DM dm, Vec locX, IS pointIS, 19339b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 193464c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 193564c72086SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 193664c72086SMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 193764c72086SMatthew G. Knepley PetscScalar *fintegral, void *user) 193864c72086SMatthew G. Knepley { 19399b6f715bSMatthew G. Knepley DM plex = NULL, plexA = NULL; 19409b6f715bSMatthew G. Knepley PetscDS prob, probAux = NULL; 19419b6f715bSMatthew G. Knepley PetscSection section, sectionAux = NULL; 19429b6f715bSMatthew G. Knepley Vec locA = NULL; 19439b6f715bSMatthew G. Knepley DMField coordField; 19449b6f715bSMatthew G. Knepley PetscInt Nf, totDim, *uOff, *uOff_x; 19459b6f715bSMatthew G. Knepley PetscInt NfAux = 0, totDimAux = 0, *aOff = NULL; 19469b6f715bSMatthew G. Knepley PetscScalar *u, *a = NULL; 194764c72086SMatthew G. Knepley const PetscScalar *constants; 19489b6f715bSMatthew G. Knepley PetscInt numConstants, f; 194964c72086SMatthew G. Knepley PetscErrorCode ierr; 195064c72086SMatthew G. Knepley 195164c72086SMatthew G. Knepley PetscFunctionBegin; 19529b6f715bSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 19539b6f715bSMatthew G. Knepley ierr = DMConvert(dm, DMPLEX, &plex);CHKERRQ(ierr); 195464c72086SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 195564c72086SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 195664c72086SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 195764c72086SMatthew G. Knepley /* Determine which discretizations we have */ 19589b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 195964c72086SMatthew G. Knepley PetscObject obj; 196064c72086SMatthew G. Knepley PetscClassId id; 196164c72086SMatthew G. Knepley 19629b6f715bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 196364c72086SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 19649b6f715bSMatthew G. Knepley if (id == PETSCFV_CLASSID) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "Not supported for FVM (field %D)", f); 196564c72086SMatthew G. Knepley } 196664c72086SMatthew G. Knepley /* Read DS information */ 196764c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 196864c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 196964c72086SMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 197064c72086SMatthew G. Knepley ierr = PetscDSGetConstants(prob, &numConstants, &constants);CHKERRQ(ierr); 197164c72086SMatthew G. Knepley /* Read Auxiliary DS information */ 197264c72086SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 19739b6f715bSMatthew G. Knepley if (locA) { 19749b6f715bSMatthew G. Knepley DM dmAux; 19759b6f715bSMatthew G. Knepley 19769b6f715bSMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 19779b6f715bSMatthew G. Knepley ierr = DMConvert(dmAux, DMPLEX, &plexA);CHKERRQ(ierr); 197864c72086SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 197964c72086SMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 198064c72086SMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 198164c72086SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 198264c72086SMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 198364c72086SMatthew G. Knepley } 19849b6f715bSMatthew G. Knepley /* Integrate over points */ 19859b6f715bSMatthew G. Knepley { 19869b6f715bSMatthew G. Knepley PetscFEGeom *fgeom, *chunkGeom = NULL; 1987b7260050SToby Isaac PetscInt maxDegree; 19889b6f715bSMatthew G. Knepley PetscQuadrature qGeom = NULL; 19899b6f715bSMatthew G. Knepley const PetscInt *points; 19909b6f715bSMatthew G. Knepley PetscInt numFaces, face, Nq, field; 19919b6f715bSMatthew G. Knepley PetscInt numChunks, chunkSize, chunk, Nr, offset; 199264c72086SMatthew G. Knepley 19939b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 19949b6f715bSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 19959b6f715bSMatthew G. Knepley ierr = PetscCalloc2(numFaces*totDim, &u, locA ? numFaces*totDimAux : 0, &a);CHKERRQ(ierr); 1996b7260050SToby Isaac ierr = DMFieldGetDegree(coordField, pointIS, NULL, &maxDegree);CHKERRQ(ierr); 199764c72086SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 199864c72086SMatthew G. Knepley PetscFE fe; 199964c72086SMatthew G. Knepley 200064c72086SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fe);CHKERRQ(ierr); 2001b7260050SToby Isaac if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, pointIS, &qGeom);CHKERRQ(ierr);} 20029b6f715bSMatthew G. Knepley if (!qGeom) { 20039b6f715bSMatthew G. Knepley ierr = PetscFEGetFaceQuadrature(fe, &qGeom);CHKERRQ(ierr); 20049b6f715bSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 20059b6f715bSMatthew G. Knepley } 20069b6f715bSMatthew G. Knepley ierr = PetscQuadratureGetData(qGeom, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 20079b6f715bSMatthew G. Knepley ierr = DMPlexGetFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 20089b6f715bSMatthew G. Knepley for (face = 0; face < numFaces; ++face) { 20099b6f715bSMatthew G. Knepley const PetscInt point = points[face], *support, *cone; 20109b6f715bSMatthew G. Knepley PetscScalar *x = NULL; 20119b6f715bSMatthew G. Knepley PetscInt i, coneSize, faceLoc; 20129b6f715bSMatthew G. Knepley 20139b6f715bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 20149b6f715bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[0], &coneSize);CHKERRQ(ierr); 20159b6f715bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[0], &cone);CHKERRQ(ierr); 20169b6f715bSMatthew G. Knepley for (faceLoc = 0; faceLoc < coneSize; ++faceLoc) if (cone[faceLoc] == point) break; 20179b6f715bSMatthew G. Knepley if (faceLoc == coneSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %D in cone of support[0] %D", face, support[0]); 20189b6f715bSMatthew G. Knepley fgeom->face[face][0] = faceLoc; 20199b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20209b6f715bSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[face*totDim+i] = x[i]; 20219b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, support[0], NULL, &x);CHKERRQ(ierr); 20229b6f715bSMatthew G. Knepley if (locA) { 20239b6f715bSMatthew G. Knepley PetscInt subp; 20249b6f715bSMatthew G. Knepley ierr = DMPlexGetSubpoint(plexA, support[0], &subp);CHKERRQ(ierr); 20259b6f715bSMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20269b6f715bSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[f*totDimAux+i] = x[i]; 20279b6f715bSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subp, NULL, &x);CHKERRQ(ierr); 20289b6f715bSMatthew G. Knepley } 20299b6f715bSMatthew G. Knepley } 20309b6f715bSMatthew G. Knepley /* Get blocking */ 20319b6f715bSMatthew G. Knepley { 20329b6f715bSMatthew G. Knepley PetscQuadrature q; 20339b6f715bSMatthew G. Knepley PetscInt numBatches, batchSize, numBlocks, blockSize; 20349b6f715bSMatthew G. Knepley PetscInt Nq, Nb; 20359b6f715bSMatthew G. Knepley 203664c72086SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 203764c72086SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 203864c72086SMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 203964c72086SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 204064c72086SMatthew G. Knepley blockSize = Nb*Nq; 204164c72086SMatthew G. Knepley batchSize = numBlocks * blockSize; 20429b6f715bSMatthew G. Knepley chunkSize = numBatches*batchSize; 204364c72086SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 20449b6f715bSMatthew G. Knepley numChunks = numFaces / chunkSize; 20459b6f715bSMatthew G. Knepley Nr = numFaces % chunkSize; 204664c72086SMatthew G. Knepley offset = numFaces - Nr; 204764c72086SMatthew G. Knepley } 20489b6f715bSMatthew G. Knepley /* Do integration for each field */ 20499b6f715bSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 20509b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, chunk*chunkSize, (chunk+1)*chunkSize, &chunkGeom);CHKERRQ(ierr); 20519b6f715bSMatthew G. Knepley ierr = PetscFEIntegrateBd(fe, prob, field, func, chunkSize, chunkGeom, u, probAux, a, fintegral);CHKERRQ(ierr); 20529b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, 0, offset, &chunkGeom);CHKERRQ(ierr); 205364c72086SMatthew G. Knepley } 20549b6f715bSMatthew G. Knepley ierr = PetscFEGeomGetChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 20559b6f715bSMatthew G. Knepley ierr = PetscFEIntegrateBd(fe, prob, field, func, Nr, chunkGeom, &u[offset*totDim], probAux, a ? &a[offset*totDimAux] : NULL, &fintegral[offset*Nf]);CHKERRQ(ierr); 20569b6f715bSMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(fgeom, offset, numFaces, &chunkGeom);CHKERRQ(ierr); 205764c72086SMatthew G. Knepley /* Cleanup data arrays */ 20589b6f715bSMatthew G. Knepley ierr = DMPlexRestoreFEGeom(coordField, pointIS, qGeom, PETSC_TRUE, &fgeom);CHKERRQ(ierr); 20599b6f715bSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 20609b6f715bSMatthew G. Knepley ierr = PetscFree2(u, a);CHKERRQ(ierr); 20619b6f715bSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 206264c72086SMatthew G. Knepley } 206364c72086SMatthew G. Knepley } 20649b6f715bSMatthew G. Knepley if (plex) {ierr = DMDestroy(&plex);CHKERRQ(ierr);} 20659b6f715bSMatthew G. Knepley if (plexA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 20669b6f715bSMatthew G. Knepley PetscFunctionReturn(0); 20679b6f715bSMatthew G. Knepley } 20689b6f715bSMatthew G. Knepley 20699b6f715bSMatthew G. Knepley /*@ 20709b6f715bSMatthew G. Knepley DMPlexComputeBdIntegral - Form the integral over the specified boundary from the global input X using pointwise functions specified by the user 20719b6f715bSMatthew G. Knepley 20729b6f715bSMatthew G. Knepley Input Parameters: 20739b6f715bSMatthew G. Knepley + dm - The mesh 20749b6f715bSMatthew G. Knepley . X - Global input vector 20759b6f715bSMatthew G. Knepley . label - The boundary DMLabel 20769b6f715bSMatthew G. Knepley . numVals - The number of label values to use, or PETSC_DETERMINE for all values 20779b6f715bSMatthew G. Knepley . vals - The label values to use, or PETSC_NULL for all values 20789b6f715bSMatthew G. Knepley . func = The function to integrate along the boundary 20799b6f715bSMatthew G. Knepley - user - The user context 20809b6f715bSMatthew G. Knepley 20819b6f715bSMatthew G. Knepley Output Parameter: 20829b6f715bSMatthew G. Knepley . integral - Integral for each field 20839b6f715bSMatthew G. Knepley 20849b6f715bSMatthew G. Knepley Level: developer 20859b6f715bSMatthew G. Knepley 20869b6f715bSMatthew G. Knepley .seealso: DMPlexComputeIntegralFEM(), DMPlexComputeBdResidualFEM() 20879b6f715bSMatthew G. Knepley @*/ 20889b6f715bSMatthew G. Knepley PetscErrorCode DMPlexComputeBdIntegral(DM dm, Vec X, DMLabel label, PetscInt numVals, const PetscInt vals[], 20899b6f715bSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 20909b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 20919b6f715bSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 20929b6f715bSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 20939b6f715bSMatthew G. Knepley PetscScalar *integral, void *user) 20949b6f715bSMatthew G. Knepley { 20959b6f715bSMatthew G. Knepley Vec locX; 20969b6f715bSMatthew G. Knepley PetscSection section; 20979b6f715bSMatthew G. Knepley DMLabel depthLabel; 20989b6f715bSMatthew G. Knepley IS facetIS; 20999b6f715bSMatthew G. Knepley PetscInt dim, Nf, f, v; 21009b6f715bSMatthew G. Knepley PetscErrorCode ierr; 21019b6f715bSMatthew G. Knepley 21029b6f715bSMatthew G. Knepley PetscFunctionBegin; 21039b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21049b6f715bSMatthew G. Knepley PetscValidHeaderSpecific(X, VEC_CLASSID, 2); 21059b6f715bSMatthew G. Knepley PetscValidPointer(label, 3); 21069b6f715bSMatthew G. Knepley if (vals) PetscValidPointer(vals, 5); 21079b6f715bSMatthew G. Knepley PetscValidPointer(integral, 6); 21089b6f715bSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 21099b6f715bSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 21109b6f715bSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 21119b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(depthLabel, dim-1, &facetIS);CHKERRQ(ierr); 21129b6f715bSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 21139b6f715bSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 21149b6f715bSMatthew G. Knepley /* Get local solution with boundary values */ 21159b6f715bSMatthew G. Knepley ierr = DMGetLocalVector(dm, &locX);CHKERRQ(ierr); 21169b6f715bSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, locX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 21179b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21189b6f715bSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, locX);CHKERRQ(ierr); 21199b6f715bSMatthew G. Knepley /* Loop over label values */ 21209b6f715bSMatthew G. Knepley ierr = PetscMemzero(integral, Nf * sizeof(PetscScalar));CHKERRQ(ierr); 21219b6f715bSMatthew G. Knepley for (v = 0; v < numVals; ++v) { 21229b6f715bSMatthew G. Knepley IS pointIS; 21239b6f715bSMatthew G. Knepley PetscInt numFaces, face; 21249b6f715bSMatthew G. Knepley PetscScalar *fintegral; 21259b6f715bSMatthew G. Knepley 21269b6f715bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, vals[v], &pointIS);CHKERRQ(ierr); 21279b6f715bSMatthew G. Knepley if (!pointIS) continue; /* No points with that id on this process */ 21289b6f715bSMatthew G. Knepley { 21299b6f715bSMatthew G. Knepley IS isectIS; 21309b6f715bSMatthew G. Knepley 21319b6f715bSMatthew G. Knepley /* TODO: Special cases of ISIntersect where it is quick to check a priori if one is a superset of the other */ 21329b6f715bSMatthew G. Knepley ierr = ISIntersect_Caching_Internal(facetIS, pointIS, &isectIS);CHKERRQ(ierr); 21339b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 21349b6f715bSMatthew G. Knepley pointIS = isectIS; 21359b6f715bSMatthew G. Knepley } 21369b6f715bSMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numFaces);CHKERRQ(ierr); 21379b6f715bSMatthew G. Knepley ierr = PetscCalloc1(numFaces*Nf, &fintegral);CHKERRQ(ierr); 21389b6f715bSMatthew G. Knepley ierr = DMPlexComputeBdIntegral_Internal(dm, locX, pointIS, func, fintegral, user);CHKERRQ(ierr); 21399b6f715bSMatthew G. Knepley /* Sum point contributions into integral */ 21409b6f715bSMatthew G. Knepley for (f = 0; f < Nf; ++f) for (face = 0; face < numFaces; ++face) integral[f] += fintegral[face*Nf+f]; 21419b6f715bSMatthew G. Knepley ierr = PetscFree(fintegral);CHKERRQ(ierr); 21429b6f715bSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 21439b6f715bSMatthew G. Knepley } 214464c72086SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &locX);CHKERRQ(ierr); 21459b6f715bSMatthew G. Knepley ierr = ISDestroy(&facetIS);CHKERRQ(ierr); 21469b6f715bSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 214764c72086SMatthew G. Knepley PetscFunctionReturn(0); 214864c72086SMatthew G. Knepley } 214964c72086SMatthew G. Knepley 2150d69c5d34SMatthew G. Knepley /*@ 215168132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 2152d69c5d34SMatthew G. Knepley 2153d69c5d34SMatthew G. Knepley Input Parameters: 2154d69c5d34SMatthew G. Knepley + dmf - The fine mesh 2155d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 2156d69c5d34SMatthew G. Knepley - user - The user context 2157d69c5d34SMatthew G. Knepley 2158d69c5d34SMatthew G. Knepley Output Parameter: 2159934789fcSMatthew G. Knepley . In - The interpolation matrix 2160d69c5d34SMatthew G. Knepley 2161d69c5d34SMatthew G. Knepley Level: developer 2162d69c5d34SMatthew G. Knepley 216368132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2164d69c5d34SMatthew G. Knepley @*/ 216568132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 2166d69c5d34SMatthew G. Knepley { 2167d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 2168d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 21692764a2aaSMatthew G. Knepley PetscDS prob; 2170d69c5d34SMatthew G. Knepley PetscFE *feRef; 217197c42addSMatthew G. Knepley PetscFV *fvRef; 2172d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 2173d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 2174d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 21759ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 21760f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 2177d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 2178d69c5d34SMatthew G. Knepley 2179d69c5d34SMatthew G. Knepley PetscFunctionBegin; 2180d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2181c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 2182e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2183e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 2184e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2185e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 2186d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 2187d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 21889ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 21899ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 21902764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 219197c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 2192d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 219397c42addSMatthew G. Knepley PetscObject obj; 219497c42addSMatthew G. Knepley PetscClassId id; 2195aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 2196d69c5d34SMatthew G. Knepley 219797c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 219897c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 219997c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 220097c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 220197c42addSMatthew G. Knepley 22020f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 2203d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 22040f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 220597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 220697c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 220797c42addSMatthew G. Knepley PetscDualSpace Q; 220897c42addSMatthew G. Knepley 220997c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 221097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 221197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 221297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 221397c42addSMatthew G. Knepley } 22149c3cf19fSMatthew G. Knepley rTotDim += rNb; 2215d69c5d34SMatthew G. Knepley } 22162764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 22170f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 22180f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 2219d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 2220d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 2221d69c5d34SMatthew G. Knepley PetscQuadrature f; 2222d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 2223d69c5d34SMatthew G. Knepley PetscReal *points; 2224d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 2225d69c5d34SMatthew G. Knepley 2226d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 222797c42addSMatthew G. Knepley if (feRef[fieldI]) { 2228d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 22290f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 223097c42addSMatthew G. Knepley } else { 223197c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 223297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 223397c42addSMatthew G. Knepley } 2234d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 2235d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 2236d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22379c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 2238d69c5d34SMatthew G. Knepley npoints += Np; 2239d69c5d34SMatthew G. Knepley } 2240d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 2241d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2242d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22439c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 2244d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 2245d69c5d34SMatthew G. Knepley } 2246d69c5d34SMatthew G. Knepley 2247d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 224897c42addSMatthew G. Knepley PetscObject obj; 224997c42addSMatthew G. Knepley PetscClassId id; 2250d69c5d34SMatthew G. Knepley PetscReal *B; 22519c3cf19fSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j, qNc; 2252d69c5d34SMatthew G. Knepley 225397c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 225497c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 225597c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 225697c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2257d69c5d34SMatthew G. Knepley 2258d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 22590f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 22600f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2261ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 2262ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 22639c3cf19fSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %D does not match coarse field %D", Nc, NcJ); 22640f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 2265d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 2266d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22679c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 22689c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 2269d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 227036a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2271d172c84bSMatthew G. Knepley /* 2272d172c84bSMatthew G. Knepley cTotDim: Total columns in element interpolation matrix, sum of number of dual basis functionals in each field 2273d172c84bSMatthew G. Knepley offsetI, offsetJ: Offsets into the larger element interpolation matrix for different fields 2274d172c84bSMatthew G. Knepley fpdim, i, cpdim, j: Dofs for fine and coarse grids, correspond to dual space basis functionals 2275d172c84bSMatthew G. Knepley qNC, Nc, Ncj, c: Number of components in this field 2276d172c84bSMatthew G. Knepley Np, p: Number of quad points in the fine grid functional i 2277d172c84bSMatthew G. Knepley k: i*Np + p, overall point number for the interpolation 2278d172c84bSMatthew G. Knepley */ 22799c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p*qNc+c]; 228036a6d9c0SMatthew G. Knepley } 2281d69c5d34SMatthew G. Knepley } 2282d69c5d34SMatthew G. Knepley } 22830f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 2284ffe73a53SMatthew G. Knepley } 228597c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 228697c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 228797c42addSMatthew G. Knepley 228897c42addSMatthew G. Knepley /* Evaluate constant function at points */ 228997c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 229097c42addSMatthew G. Knepley cpdim = 1; 229197c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 229297c42addSMatthew G. Knepley if (fieldI == fieldJ) { 229397c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 229497c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 229597c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 22969c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, NULL, &qweights);CHKERRQ(ierr); 22979c3cf19fSMatthew G. Knepley if (qNc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, NcJ); 229897c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 229997c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2300458eb97cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i)*cTotDim + offsetJ + j] += 1.0*qweights[p*qNc+c]; 230197c42addSMatthew G. Knepley } 230297c42addSMatthew G. Knepley } 230397c42addSMatthew G. Knepley } 230497c42addSMatthew G. Knepley } 230597c42addSMatthew G. Knepley } 2306d172c84bSMatthew G. Knepley offsetJ += cpdim; 2307d69c5d34SMatthew G. Knepley } 2308d172c84bSMatthew G. Knepley offsetI += fpdim; 2309549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 2310d69c5d34SMatthew G. Knepley } 23110f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 23127f5b169aSMatthew G. Knepley /* Preallocate matrix */ 23137f5b169aSMatthew G. Knepley { 2314c094ef40SMatthew G. Knepley Mat preallocator; 2315c094ef40SMatthew G. Knepley PetscScalar *vals; 2316c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 2317c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 23187f5b169aSMatthew G. Knepley 2319c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 2320c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 2321c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 2322c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 2323c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 2324c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 23257f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 23267f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 2327c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 23287f5b169aSMatthew G. Knepley } 2329c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 2330c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2331c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2332c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 2333c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 23347f5b169aSMatthew G. Knepley } 23357f5b169aSMatthew G. Knepley /* Fill matrix */ 23367f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 2337d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2338934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 2339d69c5d34SMatthew G. Knepley } 2340549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 234197c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 2342549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2343934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2344934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2345d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 2346825f8a23SLisandro Dalcin ierr = PetscPrintf(PetscObjectComm((PetscObject)In), "%s:\n", name);CHKERRQ(ierr); 2347934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 2348825f8a23SLisandro Dalcin ierr = MatView(In, NULL);CHKERRQ(ierr); 2349d69c5d34SMatthew G. Knepley } 2350d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2351d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 2352d69c5d34SMatthew G. Knepley } 23536c73c22cSMatthew G. Knepley 2354bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixNested(DM dmc, DM dmf, Mat mass, void *user) 2355bd041c0cSMatthew G. Knepley { 2356bd041c0cSMatthew G. Knepley SETERRQ(PetscObjectComm((PetscObject) dmc), PETSC_ERR_SUP, "Laziness"); 2357bd041c0cSMatthew G. Knepley } 2358bd041c0cSMatthew G. Knepley 235968132eb9SMatthew G. Knepley /*@ 236068132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 236168132eb9SMatthew G. Knepley 236268132eb9SMatthew G. Knepley Input Parameters: 236368132eb9SMatthew G. Knepley + dmf - The fine mesh 236468132eb9SMatthew G. Knepley . dmc - The coarse mesh 236568132eb9SMatthew G. Knepley - user - The user context 236668132eb9SMatthew G. Knepley 236768132eb9SMatthew G. Knepley Output Parameter: 236868132eb9SMatthew G. Knepley . In - The interpolation matrix 236968132eb9SMatthew G. Knepley 237068132eb9SMatthew G. Knepley Level: developer 237168132eb9SMatthew G. Knepley 237268132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 237368132eb9SMatthew G. Knepley @*/ 237468132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 23754ef9d792SMatthew G. Knepley { 237664e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 237764e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 23784ef9d792SMatthew G. Knepley PetscDS prob; 23794ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2380e8f14785SLisandro Dalcin PetscHSetIJ ht; 23814ef9d792SMatthew G. Knepley PetscLayout rLayout; 23824ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 23834ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 23844ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 23854ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 23864ef9d792SMatthew G. Knepley PetscScalar *elemMat; 23874ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 23884ef9d792SMatthew G. Knepley PetscErrorCode ierr; 23894ef9d792SMatthew G. Knepley 23904ef9d792SMatthew G. Knepley PetscFunctionBegin; 239177711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 23924ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 23934ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 23944ef9d792SMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 23954ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 23964ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 23974ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 2398e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2399e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 2400e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2401e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 24024ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 24034ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 24049c3cf19fSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 24054ef9d792SMatthew G. Knepley 24064ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 24074ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 24084ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 24094ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 24104ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 24114ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 24124ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 24134ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2414e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 24154ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 24164ef9d792SMatthew G. Knepley PetscObject obj; 24174ef9d792SMatthew G. Knepley PetscClassId id; 2418c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 24194ef9d792SMatthew G. Knepley PetscQuadrature f; 242017f047d8SMatthew G. Knepley const PetscReal *qpoints; 242117f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 24224ef9d792SMatthew G. Knepley 24234ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 24244ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 24254ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 24264ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 24274ef9d792SMatthew G. Knepley 24284ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 24294ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 24304ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 24314ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 24324ef9d792SMatthew G. Knepley 24334ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 24344ef9d792SMatthew G. Knepley Nc = 1; 24354ef9d792SMatthew G. Knepley } 24364ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 24374ef9d792SMatthew G. Knepley /* For each fine grid cell */ 24384ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 24394ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 24404ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 24414ef9d792SMatthew G. Knepley 24426ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 24434ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 24449c3cf19fSMatthew G. Knepley if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim); 24454ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 24464ef9d792SMatthew G. Knepley Vec pointVec; 24474ef9d792SMatthew G. Knepley PetscScalar *pV; 24483a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 24493a93e3b7SToby Isaac const PetscSFNode *coarseCells; 24509c3cf19fSMatthew G. Knepley PetscInt numCoarseCells, q, c; 24514ef9d792SMatthew G. Knepley 24524ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 24534ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 24549c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 24554ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 24564ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 24574ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 24584ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2459c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2460c330f8ffSToby Isaac 24614ef9d792SMatthew G. Knepley /* Transform point to real space */ 2462c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 24634ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 24644ef9d792SMatthew G. Knepley } 24654ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 24664ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 24671555c271SMatthew G. Knepley /* OPT: Pack all quad points from fine cell */ 246862a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 24693a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 24704ef9d792SMatthew G. Knepley /* Update preallocation info */ 24713a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 24723a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 24739c3cf19fSMatthew G. Knepley { 2474e8f14785SLisandro Dalcin PetscHashIJKey key; 2475e8f14785SLisandro Dalcin PetscBool missing; 24764ef9d792SMatthew G. Knepley 2477e8f14785SLisandro Dalcin key.i = findices[i]; 2478e8f14785SLisandro Dalcin if (key.i >= 0) { 24794ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 24804ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 24813a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 24824ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2483e8f14785SLisandro Dalcin key.j = cindices[c]; 2484e8f14785SLisandro Dalcin if (key.j < 0) continue; 2485e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 24864ef9d792SMatthew G. Knepley if (missing) { 2487e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2488e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 24894ef9d792SMatthew G. Knepley } 24904ef9d792SMatthew G. Knepley } 24913a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 24924ef9d792SMatthew G. Knepley } 24934ef9d792SMatthew G. Knepley } 24948c543595SMatthew G. Knepley } 24953a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 24964ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 24974ef9d792SMatthew G. Knepley } 249846bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 24994ef9d792SMatthew G. Knepley } 25004ef9d792SMatthew G. Knepley } 2501e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 25024ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 25034ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 25044ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 25054ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 25064ef9d792SMatthew G. Knepley PetscObject obj; 25074ef9d792SMatthew G. Knepley PetscClassId id; 2508c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 25094ef9d792SMatthew G. Knepley PetscQuadrature f; 25104ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 25119c3cf19fSMatthew G. Knepley PetscInt Nc, qNc, Np, fpdim, i, d; 25124ef9d792SMatthew G. Knepley 25134ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 25144ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 25154ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 25164ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 25174ef9d792SMatthew G. Knepley 25184ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 25194ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 25204ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 25214ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 25224ef9d792SMatthew G. Knepley 25234ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 25244ef9d792SMatthew G. Knepley Nc = 1; 252525ce1634SJed Brown } else SETERRQ1(PetscObjectComm((PetscObject)dmc),PETSC_ERR_ARG_WRONG,"Unknown discretization type for field %d",field); 25264ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 25274ef9d792SMatthew G. Knepley /* For each fine grid cell */ 25284ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 25294ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 25304ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 25314ef9d792SMatthew G. Knepley 25326ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 25334ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 25349c3cf19fSMatthew G. Knepley if (numFIndices != fpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim); 25354ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 25364ef9d792SMatthew G. Knepley Vec pointVec; 25374ef9d792SMatthew G. Knepley PetscScalar *pV; 253812111d7cSToby Isaac PetscSF coarseCellSF = NULL; 25393a93e3b7SToby Isaac const PetscSFNode *coarseCells; 254017f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 25414ef9d792SMatthew G. Knepley 25424ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 25434ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 25449c3cf19fSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &qNc, &Np, &qpoints, &qweights);CHKERRQ(ierr); 25459c3cf19fSMatthew G. Knepley if (qNc != Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in quadrature %D does not match coarse field %D", qNc, Nc); 25464ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 25474ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 25484ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 25494ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 2550c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2551c330f8ffSToby Isaac 25524ef9d792SMatthew G. Knepley /* Transform point to real space */ 2553c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 25544ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 25554ef9d792SMatthew G. Knepley } 25564ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 25574ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 25581555c271SMatthew G. Knepley /* OPT: Read this out from preallocation information */ 255962a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 25604ef9d792SMatthew G. Knepley /* Update preallocation info */ 25613a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 25623a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 25634ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 25644ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2565826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 2566c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2567826eb36dSMatthew G. Knepley 25683a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25694ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 25703a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2571e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2572c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 25734ef9d792SMatthew G. Knepley 25744ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 25754ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 25764ef9d792SMatthew G. Knepley PetscReal *B; 25774ef9d792SMatthew G. Knepley 25784ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 25794ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 25804ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 25819c3cf19fSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 25824ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 25834ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 25849c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*qweights[ccell*qNc + c]; 25854ef9d792SMatthew G. Knepley } 25864ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 25874ef9d792SMatthew G. Knepley } else { 25884ef9d792SMatthew G. Knepley cpdim = 1; 25894ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 25909c3cf19fSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*qweights[ccell*qNc + c]; 25914ef9d792SMatthew G. Knepley } 25924ef9d792SMatthew G. Knepley } 25934ef9d792SMatthew G. Knepley /* Update interpolator */ 25949c3cf19fSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 25959c3cf19fSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 25969c3cf19fSMatthew G. Knepley ierr = MatSetValues(In, 1, &findices[i], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 25973a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 25984ef9d792SMatthew G. Knepley } 25994ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 26003a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 26014ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 26024ef9d792SMatthew G. Knepley } 260346bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 26044ef9d792SMatthew G. Knepley } 26054ef9d792SMatthew G. Knepley } 26064ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 26074ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 26084ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 26094ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26104ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 261177711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 26124ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 26134ef9d792SMatthew G. Knepley } 26144ef9d792SMatthew G. Knepley 261546fa42a0SMatthew G. Knepley /*@ 2616bd041c0cSMatthew G. Knepley DMPlexComputeMassMatrixGeneral - Form the local portion of the mass matrix M from the coarse DM to a non-nested fine DM. 2617bd041c0cSMatthew G. Knepley 2618bd041c0cSMatthew G. Knepley Input Parameters: 2619bd041c0cSMatthew G. Knepley + dmf - The fine mesh 2620bd041c0cSMatthew G. Knepley . dmc - The coarse mesh 2621bd041c0cSMatthew G. Knepley - user - The user context 2622bd041c0cSMatthew G. Knepley 2623bd041c0cSMatthew G. Knepley Output Parameter: 2624bd041c0cSMatthew G. Knepley . mass - The mass matrix 2625bd041c0cSMatthew G. Knepley 2626bd041c0cSMatthew G. Knepley Level: developer 2627bd041c0cSMatthew G. Knepley 2628bd041c0cSMatthew G. Knepley .seealso: DMPlexComputeMassMatrixNested(), DMPlexComputeInterpolatorNested(), DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 2629bd041c0cSMatthew G. Knepley @*/ 2630bd041c0cSMatthew G. Knepley PetscErrorCode DMPlexComputeMassMatrixGeneral(DM dmc, DM dmf, Mat mass, void *user) 2631bd041c0cSMatthew G. Knepley { 2632bd041c0cSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 2633bd041c0cSMatthew G. Knepley const char *name = "Mass Matrix"; 2634bd041c0cSMatthew G. Knepley PetscDS prob; 2635bd041c0cSMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 2636e8f14785SLisandro Dalcin PetscHSetIJ ht; 2637bd041c0cSMatthew G. Knepley PetscLayout rLayout; 2638bd041c0cSMatthew G. Knepley PetscInt *dnz, *onz; 2639bd041c0cSMatthew G. Knepley PetscInt locRows, rStart, rEnd; 2640bd041c0cSMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 2641bd041c0cSMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 2642bd041c0cSMatthew G. Knepley PetscScalar *elemMat; 2643bd041c0cSMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 2644bd041c0cSMatthew G. Knepley PetscErrorCode ierr; 2645bd041c0cSMatthew G. Knepley 2646bd041c0cSMatthew G. Knepley PetscFunctionBegin; 2647bd041c0cSMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 2648bd041c0cSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 2649bd041c0cSMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 2650bd041c0cSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 2651bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 2652bd041c0cSMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 2653e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2654e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 2655e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2656e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 2657bd041c0cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 2658bd041c0cSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 2659bd041c0cSMatthew G. Knepley ierr = PetscMalloc1(totDim, &elemMat);CHKERRQ(ierr); 2660bd041c0cSMatthew G. Knepley 2661bd041c0cSMatthew G. Knepley ierr = MatGetLocalSize(mass, &locRows, NULL);CHKERRQ(ierr); 2662bd041c0cSMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) mass), &rLayout);CHKERRQ(ierr); 2663bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 2664bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 2665bd041c0cSMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 2666bd041c0cSMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 2667bd041c0cSMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 2668bd041c0cSMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 2669e8f14785SLisandro Dalcin ierr = PetscHSetIJCreate(&ht);CHKERRQ(ierr); 2670bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2671bd041c0cSMatthew G. Knepley PetscObject obj; 2672bd041c0cSMatthew G. Knepley PetscClassId id; 2673bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2674bd041c0cSMatthew G. Knepley const PetscReal *qpoints; 2675bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2676bd041c0cSMatthew G. Knepley 2677bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2678bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2679bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);} 2680bd041c0cSMatthew G. Knepley else {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);} 2681bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, NULL);CHKERRQ(ierr); 2682bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2683bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2684bd041c0cSMatthew G. Knepley Vec pointVec; 2685bd041c0cSMatthew G. Knepley PetscScalar *pV; 2686bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2687bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2688bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, q, c; 2689bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2690bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2691bd041c0cSMatthew G. Knepley 2692bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2693bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2694bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2695bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2696bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2697bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2698bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2699c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2700c330f8ffSToby Isaac 2701bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2702c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2703bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2704bd041c0cSMatthew G. Knepley } 2705bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2706bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2707bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2708bd041c0cSMatthew G. Knepley ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 2709bd041c0cSMatthew G. Knepley /* Update preallocation info */ 2710bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2711bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2712bd041c0cSMatthew G. Knepley { 2713e8f14785SLisandro Dalcin PetscHashIJKey key; 2714e8f14785SLisandro Dalcin PetscBool missing; 2715bd041c0cSMatthew G. Knepley 2716bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2717e8f14785SLisandro Dalcin key.i = findices[i]; 2718e8f14785SLisandro Dalcin if (key.i >= 0) { 2719bd041c0cSMatthew G. Knepley /* Get indices for coarse elements */ 2720bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2721bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2722bd041c0cSMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 2723e8f14785SLisandro Dalcin key.j = cindices[c]; 2724e8f14785SLisandro Dalcin if (key.j < 0) continue; 2725e8f14785SLisandro Dalcin ierr = PetscHSetIJQueryAdd(ht, key, &missing);CHKERRQ(ierr); 2726bd041c0cSMatthew G. Knepley if (missing) { 2727e8f14785SLisandro Dalcin if ((key.j >= rStart) && (key.j < rEnd)) ++dnz[key.i-rStart]; 2728e8f14785SLisandro Dalcin else ++onz[key.i-rStart]; 2729bd041c0cSMatthew G. Knepley } 2730bd041c0cSMatthew G. Knepley } 2731bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2732bd041c0cSMatthew G. Knepley } 2733bd041c0cSMatthew G. Knepley } 2734bd041c0cSMatthew G. Knepley } 2735bd041c0cSMatthew G. Knepley } 2736bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2737bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2738bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2739bd041c0cSMatthew G. Knepley } 2740bd041c0cSMatthew G. Knepley } 2741e8f14785SLisandro Dalcin ierr = PetscHSetIJDestroy(&ht);CHKERRQ(ierr); 2742bd041c0cSMatthew G. Knepley ierr = MatXAIJSetPreallocation(mass, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 2743bd041c0cSMatthew G. Knepley ierr = MatSetOption(mass, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2744bd041c0cSMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 2745bd041c0cSMatthew G. Knepley for (field = 0; field < Nf; ++field) { 2746bd041c0cSMatthew G. Knepley PetscObject obj; 2747bd041c0cSMatthew G. Knepley PetscClassId id; 2748bd041c0cSMatthew G. Knepley PetscQuadrature quad; 2749bd041c0cSMatthew G. Knepley PetscReal *Bfine; 2750bd041c0cSMatthew G. Knepley const PetscReal *qpoints, *qweights; 2751bd041c0cSMatthew G. Knepley PetscInt Nq, Nc, i, d; 2752bd041c0cSMatthew G. Knepley 2753bd041c0cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 2754bd041c0cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 2755bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetQuadrature((PetscFE) obj, &quad);CHKERRQ(ierr);ierr = PetscFEGetDefaultTabulation((PetscFE) obj, &Bfine, NULL, NULL);CHKERRQ(ierr);} 2756bd041c0cSMatthew G. Knepley else {ierr = PetscFVGetQuadrature((PetscFV) obj, &quad);CHKERRQ(ierr);} 2757bd041c0cSMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &Nc, &Nq, &qpoints, &qweights);CHKERRQ(ierr); 2758bd041c0cSMatthew G. Knepley /* For each fine grid cell */ 2759bd041c0cSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 2760bd041c0cSMatthew G. Knepley Vec pointVec; 2761bd041c0cSMatthew G. Knepley PetscScalar *pV; 2762bd041c0cSMatthew G. Knepley PetscSF coarseCellSF = NULL; 2763bd041c0cSMatthew G. Knepley const PetscSFNode *coarseCells; 2764bd041c0cSMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 2765bd041c0cSMatthew G. Knepley PetscInt *findices, *cindices; 2766bd041c0cSMatthew G. Knepley PetscInt numFIndices, numCIndices; 2767bd041c0cSMatthew G. Knepley 2768bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2769bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 2770bd041c0cSMatthew G. Knepley /* Get points from the quadrature */ 2771bd041c0cSMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Nq*dim, &pointVec);CHKERRQ(ierr); 2772bd041c0cSMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 2773bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2774bd041c0cSMatthew G. Knepley for (q = 0; q < Nq; ++q) { 2775c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2776c330f8ffSToby Isaac 2777bd041c0cSMatthew G. Knepley /* Transform point to real space */ 2778c330f8ffSToby Isaac CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q*dim], x); 2779bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 2780bd041c0cSMatthew G. Knepley } 2781bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2782bd041c0cSMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 2783bd041c0cSMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 2784bd041c0cSMatthew G. Knepley /* Update matrix */ 2785bd041c0cSMatthew G. Knepley ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 2786bd041c0cSMatthew G. Knepley if (numCoarseCells != Nq) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 2787bd041c0cSMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 2788bd041c0cSMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 2789bd041c0cSMatthew G. Knepley PetscReal pVReal[3]; 2790c330f8ffSToby Isaac const PetscReal xi0[3] = {-1., -1., -1.}; 2791c330f8ffSToby Isaac 2792bd041c0cSMatthew G. Knepley 2793bd041c0cSMatthew G. Knepley ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2794bd041c0cSMatthew G. Knepley /* Transform points from real space to coarse reference space */ 2795bd041c0cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 2796bd041c0cSMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 2797c330f8ffSToby Isaac CoordinatesRealToRef(dim, dim, xi0, v0c, invJc, pVReal, x); 2798bd041c0cSMatthew G. Knepley 2799bd041c0cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 2800bd041c0cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 2801bd041c0cSMatthew G. Knepley PetscReal *B; 2802bd041c0cSMatthew G. Knepley 2803bd041c0cSMatthew G. Knepley /* Evaluate coarse basis on contained point */ 2804bd041c0cSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 2805bd041c0cSMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 2806bd041c0cSMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 2807bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2808bd041c0cSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 2809bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2810bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += B[j*Nc + c]*Bfine[(ccell*numFIndices + i)*Nc + c]*qweights[ccell*Nc + c]*detJ; 2811bd041c0cSMatthew G. Knepley } 2812bd041c0cSMatthew G. Knepley /* Update interpolator */ 2813bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2814bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2815bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2816bd041c0cSMatthew G. Knepley } 2817bd041c0cSMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 2818bd041c0cSMatthew G. Knepley } else { 2819bd041c0cSMatthew G. Knepley cpdim = 1; 2820bd041c0cSMatthew G. Knepley for (i = 0; i < numFIndices; ++i) { 2821bd041c0cSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim * sizeof(PetscScalar));CHKERRQ(ierr); 2822bd041c0cSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 2823bd041c0cSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[j] += 1.0*1.0*qweights[ccell*Nc + c]*detJ; 2824bd041c0cSMatthew G. Knepley } 2825bd041c0cSMatthew G. Knepley /* Update interpolator */ 2826bd041c0cSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, 1, numCIndices, elemMat);CHKERRQ(ierr);} 2827bd041c0cSMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_SELF, "Nq: %d %d Nf: %d %d Nc: %d %d\n", ccell, Nq, i, numFIndices, j, numCIndices);CHKERRQ(ierr); 2828bd041c0cSMatthew G. Knepley if (numCIndices != cpdim) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D", numCIndices, cpdim); 2829bd041c0cSMatthew G. Knepley ierr = MatSetValues(mass, 1, &findices[i], numCIndices, cindices, elemMat, ADD_VALUES);CHKERRQ(ierr); 2830bd041c0cSMatthew G. Knepley } 2831bd041c0cSMatthew G. Knepley } 2832bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 2833bd041c0cSMatthew G. Knepley } 2834bd041c0cSMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 2835bd041c0cSMatthew G. Knepley ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 2836bd041c0cSMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 2837bd041c0cSMatthew G. Knepley ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 2838bd041c0cSMatthew G. Knepley } 2839bd041c0cSMatthew G. Knepley } 2840bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 2841bd041c0cSMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 2842bd041c0cSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 2843bd041c0cSMatthew G. Knepley ierr = MatAssemblyBegin(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2844bd041c0cSMatthew G. Knepley ierr = MatAssemblyEnd(mass, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2845bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 2846bd041c0cSMatthew G. Knepley } 2847bd041c0cSMatthew G. Knepley 2848bd041c0cSMatthew G. Knepley /*@ 284946fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 285046fa42a0SMatthew G. Knepley 285146fa42a0SMatthew G. Knepley Input Parameters: 285246fa42a0SMatthew G. Knepley + dmc - The coarse mesh 285346fa42a0SMatthew G. Knepley - dmf - The fine mesh 285446fa42a0SMatthew G. Knepley - user - The user context 285546fa42a0SMatthew G. Knepley 285646fa42a0SMatthew G. Knepley Output Parameter: 285746fa42a0SMatthew G. Knepley . sc - The mapping 285846fa42a0SMatthew G. Knepley 285946fa42a0SMatthew G. Knepley Level: developer 286046fa42a0SMatthew G. Knepley 286146fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 286246fa42a0SMatthew G. Knepley @*/ 28637c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 28647c927364SMatthew G. Knepley { 2865e9d4ef1bSMatthew G. Knepley PetscDS prob; 28667c927364SMatthew G. Knepley PetscFE *feRef; 286797c42addSMatthew G. Knepley PetscFV *fvRef; 28687c927364SMatthew G. Knepley Vec fv, cv; 28697c927364SMatthew G. Knepley IS fis, cis; 28707c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 28717c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 28720bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 28736f3d3cbcSMatthew G. Knepley PetscBool *needAvg; 28747c927364SMatthew G. Knepley PetscErrorCode ierr; 28757c927364SMatthew G. Knepley 28767c927364SMatthew G. Knepley PetscFunctionBegin; 287775a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 2878c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 2879e87a4003SBarry Smith ierr = DMGetSection(dmf, &fsection);CHKERRQ(ierr); 2880e87a4003SBarry Smith ierr = DMGetGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 2881e87a4003SBarry Smith ierr = DMGetSection(dmc, &csection);CHKERRQ(ierr); 2882e87a4003SBarry Smith ierr = DMGetGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 28837c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 28847c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 28859ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 28869ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 2887e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 28886f3d3cbcSMatthew G. Knepley ierr = PetscCalloc3(Nf,&feRef,Nf,&fvRef,Nf,&needAvg);CHKERRQ(ierr); 28897c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 289097c42addSMatthew G. Knepley PetscObject obj; 289197c42addSMatthew G. Knepley PetscClassId id; 2892aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 28937c927364SMatthew G. Knepley 289497c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 289597c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 289697c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 289797c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 28986f3d3cbcSMatthew G. Knepley PetscSpace sp; 28999b2fc754SMatthew G. Knepley PetscInt maxDegree; 290097c42addSMatthew G. Knepley 29017c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 29027c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 29037c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 29046f3d3cbcSMatthew G. Knepley ierr = PetscFEGetBasisSpace(fe, &sp);CHKERRQ(ierr); 29059b2fc754SMatthew G. Knepley ierr = PetscSpaceGetDegree(sp, NULL, &maxDegree);CHKERRQ(ierr); 29069b2fc754SMatthew G. Knepley if (!maxDegree) needAvg[f] = PETSC_TRUE; 290797c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 290897c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 290997c42addSMatthew G. Knepley PetscDualSpace Q; 291097c42addSMatthew G. Knepley 291197c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 291297c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 291397c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 291497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 29156f3d3cbcSMatthew G. Knepley needAvg[f] = PETSC_TRUE; 291697c42addSMatthew G. Knepley } 2917d172c84bSMatthew G. Knepley fTotDim += fNb; 29187c927364SMatthew G. Knepley } 2919e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 29207c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 29217c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 29227c927364SMatthew G. Knepley PetscFE feC; 292397c42addSMatthew G. Knepley PetscFV fvC; 29247c927364SMatthew G. Knepley PetscDualSpace QF, QC; 2925d172c84bSMatthew G. Knepley PetscInt order = -1, NcF, NcC, fpdim, cpdim; 29267c927364SMatthew G. Knepley 292797c42addSMatthew G. Knepley if (feRef[field]) { 2928e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 29297c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 29307c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 29317c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 2932d172c84bSMatthew G. Knepley ierr = PetscDualSpaceGetOrder(QF, &order);CHKERRQ(ierr); 29337c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 29347c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 29357c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 293697c42addSMatthew G. Knepley } else { 293797c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 293897c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 293997c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 294097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 294197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 294297c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 294397c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 294497c42addSMatthew G. Knepley } 294597c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 29467c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 29477c927364SMatthew G. Knepley PetscQuadrature cfunc; 2948d172c84bSMatthew G. Knepley const PetscReal *cqpoints, *cqweights; 2949d172c84bSMatthew G. Knepley PetscInt NqcC, NpC; 295097c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 29517c927364SMatthew G. Knepley 29527c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 2953d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NqcC, &NpC, &cqpoints, &cqweights);CHKERRQ(ierr); 2954d172c84bSMatthew G. Knepley if (NqcC != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcC, NcC); 295597c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 29567c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 29577c927364SMatthew G. Knepley PetscQuadrature ffunc; 2958d172c84bSMatthew G. Knepley const PetscReal *fqpoints, *fqweights; 29597c927364SMatthew G. Knepley PetscReal sum = 0.0; 2960d172c84bSMatthew G. Knepley PetscInt NqcF, NpF; 29617c927364SMatthew G. Knepley 29627c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 2963d172c84bSMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NqcF, &NpF, &fqpoints, &fqweights);CHKERRQ(ierr); 2964d172c84bSMatthew G. Knepley if (NqcF != NcF) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of quadrature components %D must match number of field components", NqcF, NcF); 29657c927364SMatthew G. Knepley if (NpC != NpF) continue; 29667c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 29677c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 2968d172c84bSMatthew G. Knepley for (d = 0; d < NcC; ++d) sum += PetscAbsReal(cqweights[d]*fqweights[d]); 2969d172c84bSMatthew G. Knepley if (sum < 1.0e-9) continue; 2970d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+f; 297197c42addSMatthew G. Knepley found = PETSC_TRUE; 29727c927364SMatthew G. Knepley break; 29737c927364SMatthew G. Knepley } 297497c42addSMatthew G. Knepley if (!found) { 297597c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 2976d172c84bSMatthew G. Knepley if (fvRef[field] || (feRef[field] && order == 0)) { 2977d172c84bSMatthew G. Knepley cmap[offsetC+c] = offsetF+0; 297897c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 297997c42addSMatthew G. Knepley } 29807c927364SMatthew G. Knepley } 2981d172c84bSMatthew G. Knepley offsetC += cpdim; 2982d172c84bSMatthew G. Knepley offsetF += fpdim; 29837c927364SMatthew G. Knepley } 298497c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 29856f3d3cbcSMatthew G. Knepley ierr = PetscFree3(feRef,fvRef,needAvg);CHKERRQ(ierr); 29867c927364SMatthew G. Knepley 29877c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 29887c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 29890bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 29907c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 29917c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 2992aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 2993aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 29947c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 29957c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 29967c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 29977c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 29980bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 29997c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 30007c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 30017c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 30027c927364SMatthew G. Knepley } 30037c927364SMatthew G. Knepley } 30047c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 30057c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 30067c927364SMatthew G. Knepley 30077c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 30087c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 30099448b7f1SJunchao Zhang ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 30107c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 30117c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 30127c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 30137c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 301475a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 3015cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 3016cb1e1211SMatthew G Knepley } 3017a1cf66bbSMatthew G. Knepley 30182f856554SMatthew G. Knepley /*@C 30192f856554SMatthew G. Knepley DMPlexGetCellFields - Retrieve the field values values for a chunk of cells 30202f856554SMatthew G. Knepley 30212f856554SMatthew G. Knepley Input Parameters: 30222f856554SMatthew G. Knepley + dm - The DM 30232f856554SMatthew G. Knepley . cellIS - The cells to include 30242f856554SMatthew G. Knepley . locX - A local vector with the solution fields 30252f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 30262f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 30272f856554SMatthew G. Knepley 30282f856554SMatthew G. Knepley Output Parameters: 30292f856554SMatthew G. Knepley + u - The field coefficients 30302f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 30312f856554SMatthew G. Knepley - a - The auxiliary field coefficients 30322f856554SMatthew G. Knepley 30332f856554SMatthew G. Knepley Level: developer 30342f856554SMatthew G. Knepley 30352f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 30362f856554SMatthew G. Knepley @*/ 30372f856554SMatthew G. Knepley PetscErrorCode DMPlexGetCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 30382f856554SMatthew G. Knepley { 30392f856554SMatthew G. Knepley DM plex, plexA = NULL; 30402f856554SMatthew G. Knepley PetscSection section, sectionAux; 30412f856554SMatthew G. Knepley PetscDS prob; 30422f856554SMatthew G. Knepley const PetscInt *cells; 30432f856554SMatthew G. Knepley PetscInt cStart, cEnd, numCells, totDim, totDimAux, c; 30442f856554SMatthew G. Knepley PetscErrorCode ierr; 30452f856554SMatthew G. Knepley 30462f856554SMatthew G. Knepley PetscFunctionBegin; 30472f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 30482f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 30492f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 30502f856554SMatthew G. Knepley if (locA) {PetscValidHeaderSpecific(locA, VEC_CLASSID, 6);} 30512f856554SMatthew G. Knepley PetscValidPointer(u, 7); 30522f856554SMatthew G. Knepley PetscValidPointer(u_t, 8); 30532f856554SMatthew G. Knepley PetscValidPointer(a, 9); 30542f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dm, &plex, PETSC_FALSE);CHKERRQ(ierr); 30552f856554SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 30562f856554SMatthew G. Knepley ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 30572f856554SMatthew G. Knepley ierr = DMGetCellDS(dm, cStart, &prob);CHKERRQ(ierr); 30582f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 30592f856554SMatthew G. Knepley if (locA) { 30602f856554SMatthew G. Knepley DM dmAux; 30612f856554SMatthew G. Knepley PetscDS probAux; 30622f856554SMatthew G. Knepley 30632f856554SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 30642f856554SMatthew G. Knepley ierr = DMPlexConvertPlex(dmAux, &plexA, PETSC_FALSE);CHKERRQ(ierr); 30652f856554SMatthew G. Knepley ierr = DMGetSection(dmAux, §ionAux);CHKERRQ(ierr); 30662f856554SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 30672f856554SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 30682f856554SMatthew G. Knepley } 30692f856554SMatthew G. Knepley numCells = cEnd - cStart; 30702f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u);CHKERRQ(ierr); 30712f856554SMatthew G. Knepley if (locX_t) {ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, u_t);CHKERRQ(ierr);} else {*u_t = NULL;} 30722f856554SMatthew G. Knepley if (locA) {ierr = DMGetWorkArray(dm, numCells*totDimAux, MPIU_SCALAR, a);CHKERRQ(ierr);} else {*a = NULL;} 30732f856554SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 30742f856554SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 30752f856554SMatthew G. Knepley const PetscInt cind = c - cStart; 30762f856554SMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL, *ul = *u, *ul_t = *u_t, *al = *a; 30772f856554SMatthew G. Knepley PetscInt i; 30782f856554SMatthew G. Knepley 30792f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 30802f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul[cind*totDim+i] = x[i]; 30812f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX, cell, NULL, &x);CHKERRQ(ierr); 30822f856554SMatthew G. Knepley if (locX_t) { 30832f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 30842f856554SMatthew G. Knepley for (i = 0; i < totDim; ++i) ul_t[cind*totDim+i] = x_t[i]; 30852f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plex, section, locX_t, cell, NULL, &x_t);CHKERRQ(ierr); 30862f856554SMatthew G. Knepley } 30872f856554SMatthew G. Knepley if (locA) { 30882f856554SMatthew G. Knepley PetscInt subcell; 30892f856554SMatthew G. Knepley ierr = DMPlexGetAuxiliaryPoint(plex, plexA, cell, &subcell);CHKERRQ(ierr); 30902f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 30912f856554SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) al[cind*totDimAux+i] = x[i]; 30922f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(plexA, sectionAux, locA, subcell, NULL, &x);CHKERRQ(ierr); 30932f856554SMatthew G. Knepley } 30942f856554SMatthew G. Knepley } 30952f856554SMatthew G. Knepley ierr = DMDestroy(&plex);CHKERRQ(ierr); 30962f856554SMatthew G. Knepley if (locA) {ierr = DMDestroy(&plexA);CHKERRQ(ierr);} 30972f856554SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 30982f856554SMatthew G. Knepley PetscFunctionReturn(0); 30992f856554SMatthew G. Knepley } 31002f856554SMatthew G. Knepley 31012f856554SMatthew G. Knepley /*@C 31022f856554SMatthew G. Knepley DMPlexRestoreCellFields - Restore the field values values for a chunk of cells 31032f856554SMatthew G. Knepley 31042f856554SMatthew G. Knepley Input Parameters: 31052f856554SMatthew G. Knepley + dm - The DM 31062f856554SMatthew G. Knepley . cellIS - The cells to include 31072f856554SMatthew G. Knepley . locX - A local vector with the solution fields 31082f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 31092f856554SMatthew G. Knepley - locA - A local vector with auxiliary fields, or NULL 31102f856554SMatthew G. Knepley 31112f856554SMatthew G. Knepley Output Parameters: 31122f856554SMatthew G. Knepley + u - The field coefficients 31132f856554SMatthew G. Knepley . u_t - The fields derivative coefficients 31142f856554SMatthew G. Knepley - a - The auxiliary field coefficients 31152f856554SMatthew G. Knepley 31162f856554SMatthew G. Knepley Level: developer 31172f856554SMatthew G. Knepley 31182f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 31192f856554SMatthew G. Knepley @*/ 31202f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreCellFields(DM dm, IS cellIS, Vec locX, Vec locX_t, Vec locA, PetscScalar **u, PetscScalar **u_t, PetscScalar **a) 31212f856554SMatthew G. Knepley { 31222f856554SMatthew G. Knepley PetscErrorCode ierr; 31232f856554SMatthew G. Knepley 31242f856554SMatthew G. Knepley PetscFunctionBegin; 31252f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u);CHKERRQ(ierr); 31262f856554SMatthew G. Knepley if (locX_t) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, u_t);CHKERRQ(ierr);} 31272f856554SMatthew G. Knepley if (locA) {ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, a);CHKERRQ(ierr);} 31282f856554SMatthew G. Knepley PetscFunctionReturn(0); 31292f856554SMatthew G. Knepley } 31302f856554SMatthew G. Knepley 31312f856554SMatthew G. Knepley /*@C 31322f856554SMatthew G. Knepley DMPlexGetFaceFields - Retrieve the field values values for a chunk of faces 31332f856554SMatthew G. Knepley 31342f856554SMatthew G. Knepley Input Parameters: 31352f856554SMatthew G. Knepley + dm - The DM 31362f856554SMatthew G. Knepley . fStart - The first face to include 31372f856554SMatthew G. Knepley . fEnd - The first face to exclude 31382f856554SMatthew G. Knepley . locX - A local vector with the solution fields 31392f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 31402f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 31412f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 31422f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 31432f856554SMatthew G. Knepley 31442f856554SMatthew G. Knepley Output Parameters: 31452f856554SMatthew G. Knepley + Nface - The number of faces with field values 31462f856554SMatthew G. Knepley . uL - The field values at the left side of the face 31472f856554SMatthew G. Knepley - uR - The field values at the right side of the face 31482f856554SMatthew G. Knepley 31492f856554SMatthew G. Knepley Level: developer 31502f856554SMatthew G. Knepley 31512f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 31522f856554SMatthew G. Knepley @*/ 31532f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 31542f856554SMatthew G. Knepley { 31552f856554SMatthew G. Knepley DM dmFace, dmCell, dmGrad = NULL; 31562f856554SMatthew G. Knepley PetscSection section; 31572f856554SMatthew G. Knepley PetscDS prob; 31582f856554SMatthew G. Knepley DMLabel ghostLabel; 31592f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom, *x, *lgrad; 31602f856554SMatthew G. Knepley PetscBool *isFE; 31612f856554SMatthew G. Knepley PetscInt dim, Nf, f, Nc, numFaces = fEnd - fStart, iface, face; 31622f856554SMatthew G. Knepley PetscErrorCode ierr; 31632f856554SMatthew G. Knepley 31642f856554SMatthew G. Knepley PetscFunctionBegin; 31652f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31662f856554SMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 4); 31672f856554SMatthew G. Knepley if (locX_t) {PetscValidHeaderSpecific(locX_t, VEC_CLASSID, 5);} 31682f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 6); 31692f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 7); 31702f856554SMatthew G. Knepley if (locGrad) {PetscValidHeaderSpecific(locGrad, VEC_CLASSID, 8);} 31712f856554SMatthew G. Knepley PetscValidPointer(uL, 9); 31722f856554SMatthew G. Knepley PetscValidPointer(uR, 10); 31732f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 31742f856554SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 31752f856554SMatthew G. Knepley ierr = DMGetSection(dm, §ion);CHKERRQ(ierr); 31762f856554SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 31772f856554SMatthew G. Knepley ierr = PetscDSGetTotalComponents(prob, &Nc);CHKERRQ(ierr); 31782f856554SMatthew G. Knepley ierr = PetscMalloc1(Nf, &isFE);CHKERRQ(ierr); 31792f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 31802f856554SMatthew G. Knepley PetscObject obj; 31812f856554SMatthew G. Knepley PetscClassId id; 31822f856554SMatthew G. Knepley 31832f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 31842f856554SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 31852f856554SMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[f] = PETSC_TRUE;} 31862f856554SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {isFE[f] = PETSC_FALSE;} 31872f856554SMatthew G. Knepley else {isFE[f] = PETSC_FALSE;} 31882f856554SMatthew G. Knepley } 31892f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 31902f856554SMatthew G. Knepley ierr = VecGetArrayRead(locX, &x);CHKERRQ(ierr); 31912f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 31922f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 31932f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 31942f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 31952f856554SMatthew G. Knepley if (locGrad) { 31962f856554SMatthew G. Knepley ierr = VecGetDM(locGrad, &dmGrad);CHKERRQ(ierr); 31972f856554SMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 31982f856554SMatthew G. Knepley } 31992f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uL);CHKERRQ(ierr); 32002f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*Nc, MPIU_SCALAR, uR);CHKERRQ(ierr); 32012f856554SMatthew G. Knepley /* Right now just eat the extra work for FE (could make a cell loop) */ 32022f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 32032f856554SMatthew G. Knepley const PetscInt *cells; 32042f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 32052f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 32062f856554SMatthew G. Knepley PetscScalar *xL, *xR, *gL, *gR; 32072f856554SMatthew G. Knepley PetscScalar *uLl = *uL, *uRl = *uR; 32082f856554SMatthew G. Knepley PetscInt ghost, nsupp, nchild; 32092f856554SMatthew G. Knepley 32102f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 32112f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 32122f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 32132f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 32142f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 32152f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 32162f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 32172f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 32182f856554SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 32192f856554SMatthew G. Knepley PetscInt off; 32202f856554SMatthew G. Knepley 32212f856554SMatthew G. Knepley ierr = PetscDSGetComponentOffset(prob, f, &off);CHKERRQ(ierr); 32222f856554SMatthew G. Knepley if (isFE[f]) { 32232f856554SMatthew G. Knepley const PetscInt *cone; 32242f856554SMatthew G. Knepley PetscInt comp, coneSizeL, coneSizeR, faceLocL, faceLocR, ldof, rdof, d; 32252f856554SMatthew G. Knepley 32262f856554SMatthew G. Knepley xL = xR = NULL; 32272f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 32282f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 32292f856554SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 32302f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[0], &cone);CHKERRQ(ierr); 32312f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[0], &coneSizeL);CHKERRQ(ierr); 32322f856554SMatthew G. Knepley for (faceLocL = 0; faceLocL < coneSizeL; ++faceLocL) if (cone[faceLocL] == face) break; 32332f856554SMatthew G. Knepley ierr = DMPlexGetCone(dm, cells[1], &cone);CHKERRQ(ierr); 32342f856554SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cells[1], &coneSizeR);CHKERRQ(ierr); 32352f856554SMatthew G. Knepley for (faceLocR = 0; faceLocR < coneSizeR; ++faceLocR) if (cone[faceLocR] == face) break; 32362f856554SMatthew G. Knepley if (faceLocL == coneSizeL && faceLocR == coneSizeR) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find face %d in cone of cell %d or cell %d", face, cells[0], cells[1]); 32372f856554SMatthew G. Knepley /* Check that FEM field has values in the right cell (sometimes its an FV ghost cell) */ 32382f856554SMatthew G. Knepley /* TODO: this is a hack that might not be right for nonconforming */ 32392f856554SMatthew G. Knepley if (faceLocL < coneSizeL) { 32402f856554SMatthew G. Knepley ierr = EvaluateFaceFields(prob, f, faceLocL, xL, &uLl[iface*Nc+off]);CHKERRQ(ierr); 32412f856554SMatthew G. Knepley if (rdof == ldof && faceLocR < coneSizeR) {ierr = EvaluateFaceFields(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr);} 32422f856554SMatthew G. Knepley else {for(d = 0; d < comp; ++d) uRl[iface*Nc+off+d] = uLl[iface*Nc+off+d];} 32432f856554SMatthew G. Knepley } 32442f856554SMatthew G. Knepley else { 32452f856554SMatthew G. Knepley ierr = EvaluateFaceFields(prob, f, faceLocR, xR, &uRl[iface*Nc+off]);CHKERRQ(ierr); 32462f856554SMatthew G. Knepley ierr = PetscSectionGetFieldComponents(section, f, &comp);CHKERRQ(ierr); 32472f856554SMatthew G. Knepley for(d = 0; d < comp; ++d) uLl[iface*Nc+off+d] = uRl[iface*Nc+off+d]; 32482f856554SMatthew G. Knepley } 32492f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[0], &ldof, (PetscScalar **) &xL);CHKERRQ(ierr); 32502f856554SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, locX, cells[1], &rdof, (PetscScalar **) &xR);CHKERRQ(ierr); 32512f856554SMatthew G. Knepley } else { 32522f856554SMatthew G. Knepley PetscFV fv; 32532f856554SMatthew G. Knepley PetscInt numComp, c; 32542f856554SMatthew G. Knepley 32552f856554SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, (PetscObject *) &fv);CHKERRQ(ierr); 32562f856554SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &numComp);CHKERRQ(ierr); 32572f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[0], f, x, &xL);CHKERRQ(ierr); 32582f856554SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cells[1], f, x, &xR);CHKERRQ(ierr); 32592f856554SMatthew G. Knepley if (dmGrad) { 32602f856554SMatthew G. Knepley PetscReal dxL[3], dxR[3]; 32612f856554SMatthew G. Knepley 32622f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], lgrad, &gL);CHKERRQ(ierr); 32632f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[1], lgrad, &gR);CHKERRQ(ierr); 32642f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgL->centroid, fg->centroid, dxL); 32652f856554SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cgR->centroid, fg->centroid, dxR); 32662f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 32672f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c] + DMPlex_DotD_Internal(dim, &gL[c*dim], dxL); 32682f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c] + DMPlex_DotD_Internal(dim, &gR[c*dim], dxR); 32692f856554SMatthew G. Knepley } 32702f856554SMatthew G. Knepley } else { 32712f856554SMatthew G. Knepley for (c = 0; c < numComp; ++c) { 32722f856554SMatthew G. Knepley uLl[iface*Nc+off+c] = xL[c]; 32732f856554SMatthew G. Knepley uRl[iface*Nc+off+c] = xR[c]; 32742f856554SMatthew G. Knepley } 32752f856554SMatthew G. Knepley } 32762f856554SMatthew G. Knepley } 32772f856554SMatthew G. Knepley } 32782f856554SMatthew G. Knepley ++iface; 32792f856554SMatthew G. Knepley } 32802f856554SMatthew G. Knepley *Nface = iface; 32812f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locX, &x);CHKERRQ(ierr); 32822f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 32832f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 32842f856554SMatthew G. Knepley if (locGrad) { 32852f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 32862f856554SMatthew G. Knepley } 32872f856554SMatthew G. Knepley ierr = PetscFree(isFE);CHKERRQ(ierr); 32882f856554SMatthew G. Knepley PetscFunctionReturn(0); 32892f856554SMatthew G. Knepley } 32902f856554SMatthew G. Knepley 32912f856554SMatthew G. Knepley /*@C 32922f856554SMatthew G. Knepley DMPlexRestoreFaceFields - Restore the field values values for a chunk of faces 32932f856554SMatthew G. Knepley 32942f856554SMatthew G. Knepley Input Parameters: 32952f856554SMatthew G. Knepley + dm - The DM 32962f856554SMatthew G. Knepley . fStart - The first face to include 32972f856554SMatthew G. Knepley . fEnd - The first face to exclude 32982f856554SMatthew G. Knepley . locX - A local vector with the solution fields 32992f856554SMatthew G. Knepley . locX_t - A local vector with solution field time derivatives, or NULL 33002f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33012f856554SMatthew G. Knepley . cellGeometry - A local vector with cell geometry 33022f856554SMatthew G. Knepley - locaGrad - A local vector with field gradients, or NULL 33032f856554SMatthew G. Knepley 33042f856554SMatthew G. Knepley Output Parameters: 33052f856554SMatthew G. Knepley + Nface - The number of faces with field values 33062f856554SMatthew G. Knepley . uL - The field values at the left side of the face 33072f856554SMatthew G. Knepley - uR - The field values at the right side of the face 33082f856554SMatthew G. Knepley 33092f856554SMatthew G. Knepley Level: developer 33102f856554SMatthew G. Knepley 33112f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 33122f856554SMatthew G. Knepley @*/ 33132f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceFields(DM dm, PetscInt fStart, PetscInt fEnd, Vec locX, Vec locX_t, Vec faceGeometry, Vec cellGeometry, Vec locGrad, PetscInt *Nface, PetscScalar **uL, PetscScalar **uR) 33142f856554SMatthew G. Knepley { 33152f856554SMatthew G. Knepley PetscErrorCode ierr; 33162f856554SMatthew G. Knepley 33172f856554SMatthew G. Knepley PetscFunctionBegin; 33182f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uL);CHKERRQ(ierr); 33192f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_SCALAR, uR);CHKERRQ(ierr); 33202f856554SMatthew G. Knepley PetscFunctionReturn(0); 33212f856554SMatthew G. Knepley } 33222f856554SMatthew G. Knepley 33232f856554SMatthew G. Knepley /*@C 33242f856554SMatthew G. Knepley DMPlexGetFaceGeometry - Retrieve the geometric values for a chunk of faces 33252f856554SMatthew G. Knepley 33262f856554SMatthew G. Knepley Input Parameters: 33272f856554SMatthew G. Knepley + dm - The DM 33282f856554SMatthew G. Knepley . fStart - The first face to include 33292f856554SMatthew G. Knepley . fEnd - The first face to exclude 33302f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 33312f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 33322f856554SMatthew G. Knepley 33332f856554SMatthew G. Knepley Output Parameters: 33342f856554SMatthew G. Knepley + Nface - The number of faces with field values 33352f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 33362f856554SMatthew G. Knepley - vol - The cell volume 33372f856554SMatthew G. Knepley 33382f856554SMatthew G. Knepley Level: developer 33392f856554SMatthew G. Knepley 33402f856554SMatthew G. Knepley .seealso: DMPlexGetCellFields() 33412f856554SMatthew G. Knepley @*/ 33422f856554SMatthew G. Knepley PetscErrorCode DMPlexGetFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 33432f856554SMatthew G. Knepley { 33442f856554SMatthew G. Knepley DM dmFace, dmCell; 33452f856554SMatthew G. Knepley DMLabel ghostLabel; 33462f856554SMatthew G. Knepley const PetscScalar *facegeom, *cellgeom; 33472f856554SMatthew G. Knepley PetscInt dim, numFaces = fEnd - fStart, iface, face; 33482f856554SMatthew G. Knepley PetscErrorCode ierr; 33492f856554SMatthew G. Knepley 33502f856554SMatthew G. Knepley PetscFunctionBegin; 33512f856554SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33522f856554SMatthew G. Knepley PetscValidHeaderSpecific(faceGeometry, VEC_CLASSID, 4); 33532f856554SMatthew G. Knepley PetscValidHeaderSpecific(cellGeometry, VEC_CLASSID, 5); 33542f856554SMatthew G. Knepley PetscValidPointer(fgeom, 6); 33552f856554SMatthew G. Knepley PetscValidPointer(vol, 7); 33562f856554SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 33572f856554SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 33582f856554SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 33592f856554SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 33602f856554SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 33612f856554SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 33622f856554SMatthew G. Knepley ierr = PetscMalloc1(numFaces, fgeom);CHKERRQ(ierr); 33632f856554SMatthew G. Knepley ierr = DMGetWorkArray(dm, numFaces*2, MPIU_SCALAR, vol);CHKERRQ(ierr); 33642f856554SMatthew G. Knepley for (face = fStart, iface = 0; face < fEnd; ++face) { 33652f856554SMatthew G. Knepley const PetscInt *cells; 33662f856554SMatthew G. Knepley PetscFVFaceGeom *fg; 33672f856554SMatthew G. Knepley PetscFVCellGeom *cgL, *cgR; 33682f856554SMatthew G. Knepley PetscFVFaceGeom *fgeoml = *fgeom; 33692f856554SMatthew G. Knepley PetscReal *voll = *vol; 33702f856554SMatthew G. Knepley PetscInt ghost, d, nchild, nsupp; 33712f856554SMatthew G. Knepley 33722f856554SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, face, &ghost);CHKERRQ(ierr); 33732f856554SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, face, &nsupp);CHKERRQ(ierr); 33742f856554SMatthew G. Knepley ierr = DMPlexGetTreeChildren(dm, face, &nchild, NULL);CHKERRQ(ierr); 33752f856554SMatthew G. Knepley if (ghost >= 0 || nsupp > 2 || nchild > 0) continue; 33762f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 33772f856554SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 33782f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cgL);CHKERRQ(ierr); 33792f856554SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[1], cellgeom, &cgR);CHKERRQ(ierr); 33802f856554SMatthew G. Knepley for (d = 0; d < dim; ++d) { 33812f856554SMatthew G. Knepley fgeoml[iface].centroid[d] = fg->centroid[d]; 33822f856554SMatthew G. Knepley fgeoml[iface].normal[d] = fg->normal[d]; 33832f856554SMatthew G. Knepley } 33842f856554SMatthew G. Knepley voll[iface*2+0] = cgL->volume; 33852f856554SMatthew G. Knepley voll[iface*2+1] = cgR->volume; 33862f856554SMatthew G. Knepley ++iface; 33872f856554SMatthew G. Knepley } 33882f856554SMatthew G. Knepley *Nface = iface; 33892f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 33902f856554SMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 33912f856554SMatthew G. Knepley PetscFunctionReturn(0); 33922f856554SMatthew G. Knepley } 33932f856554SMatthew G. Knepley 33942f856554SMatthew G. Knepley /*@C 33952f856554SMatthew G. Knepley DMPlexRestoreFaceGeometry - Restore the field values values for a chunk of faces 33962f856554SMatthew G. Knepley 33972f856554SMatthew G. Knepley Input Parameters: 33982f856554SMatthew G. Knepley + dm - The DM 33992f856554SMatthew G. Knepley . fStart - The first face to include 34002f856554SMatthew G. Knepley . fEnd - The first face to exclude 34012f856554SMatthew G. Knepley . faceGeometry - A local vector with face geometry 34022f856554SMatthew G. Knepley - cellGeometry - A local vector with cell geometry 34032f856554SMatthew G. Knepley 34042f856554SMatthew G. Knepley Output Parameters: 34052f856554SMatthew G. Knepley + Nface - The number of faces with field values 34062f856554SMatthew G. Knepley . fgeom - The extract the face centroid and normal 34072f856554SMatthew G. Knepley - vol - The cell volume 34082f856554SMatthew G. Knepley 34092f856554SMatthew G. Knepley Level: developer 34102f856554SMatthew G. Knepley 34112f856554SMatthew G. Knepley .seealso: DMPlexGetFaceFields() 34122f856554SMatthew G. Knepley @*/ 34132f856554SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaceGeometry(DM dm, PetscInt fStart, PetscInt fEnd, Vec faceGeometry, Vec cellGeometry, PetscInt *Nface, PetscFVFaceGeom **fgeom, PetscReal **vol) 34142f856554SMatthew G. Knepley { 34152f856554SMatthew G. Knepley PetscErrorCode ierr; 34162f856554SMatthew G. Knepley 34172f856554SMatthew G. Knepley PetscFunctionBegin; 34182f856554SMatthew G. Knepley ierr = PetscFree(*fgeom);CHKERRQ(ierr); 34192f856554SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, 0, MPIU_REAL, vol);CHKERRQ(ierr); 34202f856554SMatthew G. Knepley PetscFunctionReturn(0); 34212f856554SMatthew G. Knepley } 34222f856554SMatthew G. Knepley 3423a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESGetFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3424a1cf66bbSMatthew G. Knepley { 3425a1cf66bbSMatthew G. Knepley char composeStr[33] = {0}; 3426a1cf66bbSMatthew G. Knepley PetscObjectId id; 3427a1cf66bbSMatthew G. Knepley PetscContainer container; 3428a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3429a1cf66bbSMatthew G. Knepley 3430a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3431a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetId((PetscObject)quad,&id);CHKERRQ(ierr); 3432a1cf66bbSMatthew G. Knepley ierr = PetscSNPrintf(composeStr, 32, "DMSNESGetFEGeom_%x\n", id);CHKERRQ(ierr); 3433a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) pointIS, composeStr, (PetscObject *) &container);CHKERRQ(ierr); 3434a1cf66bbSMatthew G. Knepley if (container) { 3435a1cf66bbSMatthew G. Knepley ierr = PetscContainerGetPointer(container, (void **) geom);CHKERRQ(ierr); 3436a1cf66bbSMatthew G. Knepley } else { 3437a1cf66bbSMatthew G. Knepley ierr = DMFieldCreateFEGeom(coordField, pointIS, quad, faceData, geom);CHKERRQ(ierr); 3438a1cf66bbSMatthew G. Knepley ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 3439a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetPointer(container, (void *) *geom);CHKERRQ(ierr); 3440a1cf66bbSMatthew G. Knepley ierr = PetscContainerSetUserDestroy(container, PetscContainerUserDestroy_PetscFEGeom);CHKERRQ(ierr); 3441a1cf66bbSMatthew G. Knepley ierr = PetscObjectCompose((PetscObject) pointIS, composeStr, (PetscObject) container);CHKERRQ(ierr); 3442a1cf66bbSMatthew G. Knepley ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 3443a1cf66bbSMatthew G. Knepley } 3444a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3445a1cf66bbSMatthew G. Knepley } 3446a1cf66bbSMatthew G. Knepley 3447a1cf66bbSMatthew G. Knepley PetscErrorCode DMSNESRestoreFEGeom(DMField coordField, IS pointIS, PetscQuadrature quad, PetscBool faceData, PetscFEGeom **geom) 3448a1cf66bbSMatthew G. Knepley { 3449a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3450a1cf66bbSMatthew G. Knepley *geom = NULL; 3451a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3452a1cf66bbSMatthew G. Knepley } 3453a1cf66bbSMatthew G. Knepley 345492d50984SMatthew G. Knepley PetscErrorCode DMPlexComputeResidual_Patch_Internal(DM dm, PetscSection section, IS cellIS, PetscReal t, Vec locX, Vec locX_t, Vec locF, void *user) 345592d50984SMatthew G. Knepley { 345692d50984SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 345792d50984SMatthew G. Knepley const char *name = "Residual"; 345892d50984SMatthew G. Knepley DM dmAux = NULL; 345992d50984SMatthew G. Knepley DMLabel ghostLabel = NULL; 346092d50984SMatthew G. Knepley PetscDS prob = NULL; 346192d50984SMatthew G. Knepley PetscDS probAux = NULL; 346292d50984SMatthew G. Knepley PetscBool useFEM = PETSC_FALSE; 346392d50984SMatthew G. Knepley PetscBool isImplicit = (locX_t || t == PETSC_MIN_REAL) ? PETSC_TRUE : PETSC_FALSE; 346492d50984SMatthew G. Knepley DMField coordField = NULL; 3465c0006e53SPatrick Farrell Vec locA; 3466c0006e53SPatrick Farrell PetscScalar *u = NULL, *u_t, *a, *uL = NULL, *uR = NULL; 346792d50984SMatthew G. Knepley IS chunkIS; 346892d50984SMatthew G. Knepley const PetscInt *cells; 346992d50984SMatthew G. Knepley PetscInt cStart, cEnd, numCells; 3470364207b6SKarl Rupp PetscInt Nf, f, totDim, totDimAux, numChunks, cellChunkSize, chunk, fStart, fEnd; 347192d50984SMatthew G. Knepley PetscInt maxDegree = PETSC_MAX_INT; 347292d50984SMatthew G. Knepley PetscQuadrature affineQuad = NULL, *quads = NULL; 347392d50984SMatthew G. Knepley PetscFEGeom *affineGeom = NULL, **geoms = NULL; 347492d50984SMatthew G. Knepley PetscErrorCode ierr; 347592d50984SMatthew G. Knepley 347692d50984SMatthew G. Knepley PetscFunctionBegin; 347792d50984SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 347892d50984SMatthew G. Knepley /* FEM+FVM */ 347992d50984SMatthew G. Knepley /* 1: Get sizes from dm and dmAux */ 348092d50984SMatthew G. Knepley ierr = DMGetLabel(dm, "ghost", &ghostLabel);CHKERRQ(ierr); 348192d50984SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 348292d50984SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 348392d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 348492d50984SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &locA);CHKERRQ(ierr); 348592d50984SMatthew G. Knepley if (locA) { 348692d50984SMatthew G. Knepley ierr = VecGetDM(locA, &dmAux);CHKERRQ(ierr); 348792d50984SMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 348892d50984SMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 348992d50984SMatthew G. Knepley } 349092d50984SMatthew G. Knepley /* 2: Get geometric data */ 349192d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 349292d50984SMatthew G. Knepley PetscObject obj; 349392d50984SMatthew G. Knepley PetscClassId id; 349492d50984SMatthew G. Knepley PetscBool fimp; 349592d50984SMatthew G. Knepley 349692d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 349792d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 349892d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 349992d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 350092d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) {useFEM = PETSC_TRUE;} 3501364207b6SKarl Rupp if (id == PETSCFV_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Use of FVM with PCPATCH not yet implemented"); 350292d50984SMatthew G. Knepley } 350392d50984SMatthew G. Knepley if (useFEM) { 350492d50984SMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 350592d50984SMatthew G. Knepley ierr = DMFieldGetDegree(coordField,cellIS,NULL,&maxDegree);CHKERRQ(ierr); 350692d50984SMatthew G. Knepley if (maxDegree <= 1) { 350792d50984SMatthew G. Knepley ierr = DMFieldCreateDefaultQuadrature(coordField,cellIS,&affineQuad);CHKERRQ(ierr); 350892d50984SMatthew G. Knepley if (affineQuad) { 350992d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 351092d50984SMatthew G. Knepley } 351192d50984SMatthew G. Knepley } else { 351292d50984SMatthew G. Knepley ierr = PetscCalloc2(Nf,&quads,Nf,&geoms);CHKERRQ(ierr); 351392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 351492d50984SMatthew G. Knepley PetscObject obj; 351592d50984SMatthew G. Knepley PetscClassId id; 351692d50984SMatthew G. Knepley PetscBool fimp; 351792d50984SMatthew G. Knepley 351892d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 351992d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 352092d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 352192d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 352292d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 352392d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 352492d50984SMatthew G. Knepley 352592d50984SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quads[f]);CHKERRQ(ierr); 352692d50984SMatthew G. Knepley ierr = PetscObjectReference((PetscObject)quads[f]);CHKERRQ(ierr); 352792d50984SMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 352892d50984SMatthew G. Knepley } 352992d50984SMatthew G. Knepley } 353092d50984SMatthew G. Knepley } 353192d50984SMatthew G. Knepley } 353292d50984SMatthew G. Knepley /* Loop over chunks */ 353392d50984SMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 353492d50984SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 353592d50984SMatthew G. Knepley if (useFEM) {ierr = ISCreate(PETSC_COMM_SELF, &chunkIS);CHKERRQ(ierr);} 353692d50984SMatthew G. Knepley numCells = cEnd - cStart; 353792d50984SMatthew G. Knepley numChunks = 1; 353892d50984SMatthew G. Knepley cellChunkSize = numCells/numChunks; 353992d50984SMatthew G. Knepley numChunks = PetscMin(1,numCells); 354092d50984SMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk) { 3541c0006e53SPatrick Farrell PetscScalar *elemVec, *fluxL = NULL, *fluxR = NULL; 3542c0006e53SPatrick Farrell PetscReal *vol = NULL; 3543c0006e53SPatrick Farrell PetscFVFaceGeom *fgeom = NULL; 354492d50984SMatthew G. Knepley PetscInt cS = cStart+chunk*cellChunkSize, cE = PetscMin(cS+cellChunkSize, cEnd), numCells = cE - cS, c; 3545c0006e53SPatrick Farrell PetscInt numFaces = 0; 354692d50984SMatthew G. Knepley 354792d50984SMatthew G. Knepley /* Extract field coefficients */ 354892d50984SMatthew G. Knepley if (useFEM) { 354992d50984SMatthew G. Knepley ierr = ISGetPointSubrange(chunkIS, cS, cE, cells);CHKERRQ(ierr); 355092d50984SMatthew G. Knepley ierr = DMPlexGetCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 355192d50984SMatthew G. Knepley ierr = DMGetWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 355292d50984SMatthew G. Knepley ierr = PetscMemzero(elemVec, numCells*totDim * sizeof(PetscScalar));CHKERRQ(ierr); 355392d50984SMatthew G. Knepley } 355492d50984SMatthew G. Knepley /* TODO We will interlace both our field coefficients (u, u_t, uL, uR, etc.) and our output (elemVec, fL, fR). I think this works */ 355592d50984SMatthew G. Knepley /* Loop over fields */ 355692d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 355792d50984SMatthew G. Knepley PetscObject obj; 355892d50984SMatthew G. Knepley PetscClassId id; 355992d50984SMatthew G. Knepley PetscBool fimp; 356092d50984SMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 356192d50984SMatthew G. Knepley 356292d50984SMatthew G. Knepley ierr = PetscDSGetImplicit(prob, f, &fimp);CHKERRQ(ierr); 356392d50984SMatthew G. Knepley if (isImplicit != fimp) continue; 356492d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 356592d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 356692d50984SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 356792d50984SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 356892d50984SMatthew G. Knepley PetscFEGeom *geom = affineGeom ? affineGeom : geoms[f]; 356992d50984SMatthew G. Knepley PetscFEGeom *chunkGeom = NULL; 357092d50984SMatthew G. Knepley PetscQuadrature quad = affineQuad ? affineQuad : quads[f]; 357192d50984SMatthew G. Knepley PetscInt Nq, Nb; 357292d50984SMatthew G. Knepley 357392d50984SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 357492d50984SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 357592d50984SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 357692d50984SMatthew G. Knepley blockSize = Nb; 357792d50984SMatthew G. Knepley batchSize = numBlocks * blockSize; 357892d50984SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 357992d50984SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 358092d50984SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 358192d50984SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 358292d50984SMatthew G. Knepley offset = numCells - Nr; 358392d50984SMatthew G. Knepley /* Integrate FE residual to get elemVec (need fields at quadrature points) */ 358492d50984SMatthew G. Knepley /* For FV, I think we use a P0 basis and the cell coefficients (for subdivided cells, we can tweak the basis tabulation to be the indicator function) */ 358592d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,0,offset,&chunkGeom);CHKERRQ(ierr); 358692d50984SMatthew G. Knepley ierr = PetscFEIntegrateResidual(fe, prob, f, Ne, chunkGeom, u, u_t, probAux, a, t, elemVec);CHKERRQ(ierr); 358792d50984SMatthew G. Knepley ierr = PetscFEGeomGetChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 358892d50984SMatthew G. Knepley ierr = PetscFEIntegrateResidual(fe, prob, f, Nr, chunkGeom, &u[offset*totDim], u_t ? &u_t[offset*totDim] : NULL, probAux, &a[offset*totDimAux], t, &elemVec[offset*totDim]);CHKERRQ(ierr); 358992d50984SMatthew G. Knepley ierr = PetscFEGeomRestoreChunk(geom,offset,numCells,&chunkGeom);CHKERRQ(ierr); 359092d50984SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 359192d50984SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 359292d50984SMatthew G. Knepley 359392d50984SMatthew G. Knepley Ne = numFaces; 359492d50984SMatthew G. Knepley /* Riemann solve over faces (need fields at face centroids) */ 359592d50984SMatthew G. Knepley /* We need to evaluate FE fields at those coordinates */ 359692d50984SMatthew G. Knepley ierr = PetscFVIntegrateRHSFunction(fv, prob, f, Ne, fgeom, vol, uL, uR, fluxL, fluxR);CHKERRQ(ierr); 359792d50984SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 359892d50984SMatthew G. Knepley } 359992d50984SMatthew G. Knepley /* Loop over domain */ 360092d50984SMatthew G. Knepley if (useFEM) { 360192d50984SMatthew G. Knepley /* Add elemVec to locX */ 360292d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 360392d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 360492d50984SMatthew G. Knepley const PetscInt cind = c - cStart; 360592d50984SMatthew G. Knepley 360692d50984SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellVector(cell, name, totDim, &elemVec[cind*totDim]);CHKERRQ(ierr);} 360792d50984SMatthew G. Knepley if (ghostLabel) { 360892d50984SMatthew G. Knepley PetscInt ghostVal; 360992d50984SMatthew G. Knepley 361092d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel,cell,&ghostVal);CHKERRQ(ierr); 361192d50984SMatthew G. Knepley if (ghostVal > 0) continue; 361292d50984SMatthew G. Knepley } 361392d50984SMatthew G. Knepley ierr = DMPlexVecSetClosure(dm, section, locF, cell, &elemVec[cind*totDim], ADD_ALL_VALUES);CHKERRQ(ierr); 361492d50984SMatthew G. Knepley } 361592d50984SMatthew G. Knepley } 361692d50984SMatthew G. Knepley /* Handle time derivative */ 361792d50984SMatthew G. Knepley if (locX_t) { 361892d50984SMatthew G. Knepley PetscScalar *x_t, *fa; 361992d50984SMatthew G. Knepley 362092d50984SMatthew G. Knepley ierr = VecGetArray(locF, &fa);CHKERRQ(ierr); 362192d50984SMatthew G. Knepley ierr = VecGetArray(locX_t, &x_t);CHKERRQ(ierr); 362292d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 362392d50984SMatthew G. Knepley PetscFV fv; 362492d50984SMatthew G. Knepley PetscObject obj; 362592d50984SMatthew G. Knepley PetscClassId id; 362692d50984SMatthew G. Knepley PetscInt pdim, d; 362792d50984SMatthew G. Knepley 362892d50984SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 362992d50984SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 363092d50984SMatthew G. Knepley if (id != PETSCFV_CLASSID) continue; 363192d50984SMatthew G. Knepley fv = (PetscFV) obj; 363292d50984SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 363392d50984SMatthew G. Knepley for (c = cS; c < cE; ++c) { 363492d50984SMatthew G. Knepley const PetscInt cell = cells ? cells[c] : c; 363592d50984SMatthew G. Knepley PetscScalar *u_t, *r; 363692d50984SMatthew G. Knepley 363792d50984SMatthew G. Knepley if (ghostLabel) { 363892d50984SMatthew G. Knepley PetscInt ghostVal; 363992d50984SMatthew G. Knepley 364092d50984SMatthew G. Knepley ierr = DMLabelGetValue(ghostLabel, cell, &ghostVal);CHKERRQ(ierr); 364192d50984SMatthew G. Knepley if (ghostVal > 0) continue; 364292d50984SMatthew G. Knepley } 364392d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRead(dm, cell, f, x_t, &u_t);CHKERRQ(ierr); 364492d50984SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cell, f, fa, &r);CHKERRQ(ierr); 364592d50984SMatthew G. Knepley for (d = 0; d < pdim; ++d) r[d] += u_t[d]; 364692d50984SMatthew G. Knepley } 364792d50984SMatthew G. Knepley } 364892d50984SMatthew G. Knepley ierr = VecRestoreArray(locX_t, &x_t);CHKERRQ(ierr); 364992d50984SMatthew G. Knepley ierr = VecRestoreArray(locF, &fa);CHKERRQ(ierr); 365092d50984SMatthew G. Knepley } 365192d50984SMatthew G. Knepley if (useFEM) { 365292d50984SMatthew G. Knepley ierr = DMPlexRestoreCellFields(dm, chunkIS, locX, locX_t, locA, &u, &u_t, &a);CHKERRQ(ierr); 365392d50984SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, numCells*totDim, MPIU_SCALAR, &elemVec);CHKERRQ(ierr); 365492d50984SMatthew G. Knepley } 365592d50984SMatthew G. Knepley } 365692d50984SMatthew G. Knepley if (useFEM) {ierr = ISDestroy(&chunkIS);CHKERRQ(ierr);} 365792d50984SMatthew G. Knepley ierr = ISRestorePointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 365892d50984SMatthew G. Knepley /* TODO Could include boundary residual here (see DMPlexComputeResidual_Internal) */ 365992d50984SMatthew G. Knepley if (useFEM) { 366092d50984SMatthew G. Knepley if (maxDegree <= 1) { 366192d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,affineQuad,PETSC_FALSE,&affineGeom);CHKERRQ(ierr); 366292d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&affineQuad);CHKERRQ(ierr); 366392d50984SMatthew G. Knepley } else { 366492d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 366592d50984SMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField,cellIS,quads[f],PETSC_FALSE,&geoms[f]);CHKERRQ(ierr); 366692d50984SMatthew G. Knepley ierr = PetscQuadratureDestroy(&quads[f]);CHKERRQ(ierr); 366792d50984SMatthew G. Knepley } 366892d50984SMatthew G. Knepley ierr = PetscFree2(quads,geoms);CHKERRQ(ierr); 366992d50984SMatthew G. Knepley } 367092d50984SMatthew G. Knepley } 367192d50984SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_ResidualFEM,dm,0,0,0);CHKERRQ(ierr); 367292d50984SMatthew G. Knepley PetscFunctionReturn(0); 367392d50984SMatthew G. Knepley } 367492d50984SMatthew G. Knepley 3675a1cf66bbSMatthew G. Knepley /* 3676a1cf66bbSMatthew G. Knepley We always assemble JacP, and if the matrix is different from Jac and two different sets of point functions are provided, we also assemble Jac 3677a1cf66bbSMatthew G. Knepley 3678a1cf66bbSMatthew G. Knepley X - The local solution vector 3679a1cf66bbSMatthew G. Knepley X_t - The local solution time derviative vector, or NULL 3680a1cf66bbSMatthew G. Knepley */ 3681a1cf66bbSMatthew G. Knepley PetscErrorCode DMPlexComputeJacobian_Patch_Internal(DM dm, PetscSection section, PetscSection globalSection, IS cellIS, 3682a1cf66bbSMatthew G. Knepley PetscReal t, PetscReal X_tShift, Vec X, Vec X_t, Mat Jac, Mat JacP, void *ctx) 3683a1cf66bbSMatthew G. Knepley { 3684a1cf66bbSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3685a1cf66bbSMatthew G. Knepley const char *name = "Jacobian", *nameP = "JacobianPre"; 3686a1cf66bbSMatthew G. Knepley DM dmAux = NULL; 3687a1cf66bbSMatthew G. Knepley PetscDS prob, probAux = NULL; 3688a1cf66bbSMatthew G. Knepley PetscSection sectionAux = NULL; 3689a1cf66bbSMatthew G. Knepley Vec A; 3690a1cf66bbSMatthew G. Knepley DMField coordField; 3691a1cf66bbSMatthew G. Knepley PetscFEGeom *cgeomFEM; 3692a1cf66bbSMatthew G. Knepley PetscQuadrature qGeom = NULL; 3693a1cf66bbSMatthew G. Knepley Mat J = Jac, JP = JacP; 3694a1cf66bbSMatthew G. Knepley PetscScalar *work, *u = NULL, *u_t = NULL, *a = NULL, *elemMat = NULL, *elemMatP = NULL, *elemMatD = NULL; 36959b2fc754SMatthew G. Knepley PetscBool hasJac, hasPrec, hasDyn, assembleJac, isMatIS, isMatISP, *isFE, hasFV = PETSC_FALSE; 3696a1cf66bbSMatthew G. Knepley const PetscInt *cells; 36979b2fc754SMatthew G. Knepley PetscInt Nf, fieldI, fieldJ, maxDegree, numCells, cStart, cEnd, numChunks, chunkSize, chunk, totDim, totDimAux = 0, sz, wsz, off = 0, offCell = 0; 3698a1cf66bbSMatthew G. Knepley PetscErrorCode ierr; 3699a1cf66bbSMatthew G. Knepley 3700a1cf66bbSMatthew G. Knepley PetscFunctionBegin; 3701a1cf66bbSMatthew G. Knepley CHKMEMQ; 3702a1cf66bbSMatthew G. Knepley ierr = ISGetLocalSize(cellIS, &numCells);CHKERRQ(ierr); 3703a1cf66bbSMatthew G. Knepley ierr = ISGetPointRange(cellIS, &cStart, &cEnd, &cells);CHKERRQ(ierr); 3704a1cf66bbSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3705a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 3706a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3707a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3708a1cf66bbSMatthew G. Knepley if (dmAux) { 3709a1cf66bbSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 3710a1cf66bbSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 3711a1cf66bbSMatthew G. Knepley } 3712a1cf66bbSMatthew G. Knepley /* Get flags */ 3713a1cf66bbSMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 3714a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3715a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3716a1cf66bbSMatthew G. Knepley PetscObject disc; 3717a1cf66bbSMatthew G. Knepley PetscClassId id; 3718a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, &disc);CHKERRQ(ierr); 3719a1cf66bbSMatthew G. Knepley ierr = PetscObjectGetClassId(disc, &id);CHKERRQ(ierr); 3720a1cf66bbSMatthew G. Knepley if (id == PETSCFE_CLASSID) {isFE[fieldI] = PETSC_TRUE;} 3721a1cf66bbSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {hasFV = PETSC_TRUE; isFE[fieldI] = PETSC_FALSE;} 3722a1cf66bbSMatthew G. Knepley } 3723a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobian(prob, &hasJac);CHKERRQ(ierr); 3724a1cf66bbSMatthew G. Knepley ierr = PetscDSHasJacobianPreconditioner(prob, &hasPrec);CHKERRQ(ierr); 3725a1cf66bbSMatthew G. Knepley ierr = PetscDSHasDynamicJacobian(prob, &hasDyn);CHKERRQ(ierr); 3726a1cf66bbSMatthew G. Knepley assembleJac = hasJac && hasPrec && (Jac != JacP) ? PETSC_TRUE : PETSC_FALSE; 3727a1cf66bbSMatthew G. Knepley hasDyn = hasDyn && (X_tShift != 0.0) ? PETSC_TRUE : PETSC_FALSE; 3728a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) Jac, MATIS, &isMatIS);CHKERRQ(ierr); 3729a1cf66bbSMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) JacP, MATIS, &isMatISP);CHKERRQ(ierr); 3730a1cf66bbSMatthew G. Knepley /* Setup input data and temp arrays (should be DMGetWorkArray) */ 3731a1cf66bbSMatthew G. Knepley if (isMatISP || isMatISP) {ierr = DMPlexGetSubdomainSection(dm, &globalSection);CHKERRQ(ierr);} 3732a1cf66bbSMatthew G. Knepley if (isMatIS) {ierr = MatISGetLocalMat(Jac, &J);CHKERRQ(ierr);} 3733a1cf66bbSMatthew G. Knepley if (isMatISP) {ierr = MatISGetLocalMat(JacP, &JP);CHKERRQ(ierr);} 3734a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JP, MAT_IGNORE_ZERO_ENTRIES, PETSC_TRUE);CHKERRQ(ierr);} /* No allocated space for FV stuff, so ignore the zero entries */ 3735a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 3736a1cf66bbSMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 3737a1cf66bbSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 3738a1cf66bbSMatthew G. Knepley if (probAux) {ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr);} 3739a1cf66bbSMatthew G. Knepley CHKMEMQ; 3740a1cf66bbSMatthew G. Knepley /* Compute batch sizes */ 3741a1cf66bbSMatthew G. Knepley if (isFE[0]) { 3742a1cf66bbSMatthew G. Knepley PetscFE fe; 3743a1cf66bbSMatthew G. Knepley PetscQuadrature q; 3744a1cf66bbSMatthew G. Knepley PetscInt numQuadPoints, numBatches, batchSize, numBlocks, blockSize, Nb; 3745a1cf66bbSMatthew G. Knepley 3746a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3747a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 3748a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, NULL, &numQuadPoints, NULL, NULL);CHKERRQ(ierr); 3749a1cf66bbSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 3750a1cf66bbSMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 3751a1cf66bbSMatthew G. Knepley blockSize = Nb*numQuadPoints; 3752a1cf66bbSMatthew G. Knepley batchSize = numBlocks * blockSize; 3753a1cf66bbSMatthew G. Knepley chunkSize = numBatches * batchSize; 3754a1cf66bbSMatthew G. Knepley numChunks = numCells / chunkSize + numCells % chunkSize; 3755a1cf66bbSMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 3756a1cf66bbSMatthew G. Knepley } else { 3757a1cf66bbSMatthew G. Knepley chunkSize = numCells; 3758a1cf66bbSMatthew G. Knepley numChunks = 1; 3759a1cf66bbSMatthew G. Knepley } 3760a1cf66bbSMatthew G. Knepley /* Get work space */ 3761a1cf66bbSMatthew G. Knepley wsz = (((X?1:0) + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize; 3762a1cf66bbSMatthew G. Knepley ierr = DMGetWorkArray(dm, wsz, MPIU_SCALAR, &work);CHKERRQ(ierr); 3763a1cf66bbSMatthew G. Knepley ierr = PetscMemzero(work, wsz * sizeof(PetscScalar));CHKERRQ(ierr); 3764a1cf66bbSMatthew G. Knepley off = 0; 3765a1cf66bbSMatthew G. Knepley u = X ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3766a1cf66bbSMatthew G. Knepley u_t = X_t ? (sz = chunkSize*totDim, off += sz, work+off-sz) : NULL; 3767a1cf66bbSMatthew G. Knepley a = dmAux ? (sz = chunkSize*totDimAux, off += sz, work+off-sz) : NULL; 3768a1cf66bbSMatthew G. Knepley elemMat = hasJac ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3769a1cf66bbSMatthew G. Knepley elemMatP = hasPrec ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3770a1cf66bbSMatthew G. Knepley elemMatD = hasDyn ? (sz = chunkSize*totDim*totDim, off += sz, work+off-sz) : NULL; 3771a1cf66bbSMatthew G. Knepley if (off != wsz) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Error is workspace size %D should be %D", off, wsz); 3772a1cf66bbSMatthew G. Knepley /* Setup geometry */ 3773a1cf66bbSMatthew G. Knepley ierr = DMGetCoordinateField(dm, &coordField);CHKERRQ(ierr); 37749b2fc754SMatthew G. Knepley ierr = DMFieldGetDegree(coordField, cellIS, NULL, &maxDegree);CHKERRQ(ierr); 37759b2fc754SMatthew G. Knepley if (maxDegree <= 1) {ierr = DMFieldCreateDefaultQuadrature(coordField, cellIS, &qGeom);CHKERRQ(ierr);} 3776a1cf66bbSMatthew G. Knepley if (!qGeom) { 3777a1cf66bbSMatthew G. Knepley PetscFE fe; 3778a1cf66bbSMatthew G. Knepley 3779a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, 0, (PetscObject *) &fe);CHKERRQ(ierr); 3780a1cf66bbSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &qGeom);CHKERRQ(ierr); 3781a1cf66bbSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) qGeom);CHKERRQ(ierr); 3782a1cf66bbSMatthew G. Knepley } 3783a1cf66bbSMatthew G. Knepley ierr = DMSNESGetFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3784a1cf66bbSMatthew G. Knepley /* Compute volume integrals */ 3785a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatZeroEntries(J);CHKERRQ(ierr);} 3786a1cf66bbSMatthew G. Knepley ierr = MatZeroEntries(JP);CHKERRQ(ierr); 3787a1cf66bbSMatthew G. Knepley for (chunk = 0; chunk < numChunks; ++chunk, offCell += chunkSize) { 3788a1cf66bbSMatthew G. Knepley const PetscInt Ncell = PetscMin(chunkSize, numCells - offCell); 3789a1cf66bbSMatthew G. Knepley PetscInt c; 3790a1cf66bbSMatthew G. Knepley 3791a1cf66bbSMatthew G. Knepley /* Extract values */ 3792a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3793a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3794a1cf66bbSMatthew G. Knepley PetscScalar *x = NULL, *x_t = NULL; 3795a1cf66bbSMatthew G. Knepley PetscInt i; 3796a1cf66bbSMatthew G. Knepley 3797a1cf66bbSMatthew G. Knepley if (X) { 3798a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3799a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 3800a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X, cell, NULL, &x);CHKERRQ(ierr); 3801a1cf66bbSMatthew G. Knepley } 3802a1cf66bbSMatthew G. Knepley if (X_t) { 3803a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3804a1cf66bbSMatthew G. Knepley for (i = 0; i < totDim; ++i) u_t[c*totDim+i] = x_t[i]; 3805a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, X_t, cell, NULL, &x_t);CHKERRQ(ierr); 3806a1cf66bbSMatthew G. Knepley } 3807a1cf66bbSMatthew G. Knepley if (dmAux) { 3808a1cf66bbSMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3809a1cf66bbSMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 3810a1cf66bbSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, cell, NULL, &x);CHKERRQ(ierr); 3811a1cf66bbSMatthew G. Knepley } 3812a1cf66bbSMatthew G. Knepley } 3813a1cf66bbSMatthew G. Knepley CHKMEMQ; 3814a1cf66bbSMatthew G. Knepley for (fieldI = 0; fieldI < Nf; ++fieldI) { 3815a1cf66bbSMatthew G. Knepley PetscFE fe; 3816a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fe);CHKERRQ(ierr); 3817a1cf66bbSMatthew G. Knepley for (fieldJ = 0; fieldJ < Nf; ++fieldJ) { 3818a1cf66bbSMatthew G. Knepley if (hasJac) {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMat);CHKERRQ(ierr);} 3819a1cf66bbSMatthew G. Knepley if (hasPrec) {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN_PRE, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatP);CHKERRQ(ierr);} 3820a1cf66bbSMatthew G. Knepley if (hasDyn) {ierr = PetscFEIntegrateJacobian(fe, prob, PETSCFE_JACOBIAN_DYN, fieldI, fieldJ, Ncell, cgeomFEM, u, u_t, probAux, a, t, X_tShift, elemMatD);CHKERRQ(ierr);} 3821a1cf66bbSMatthew G. Knepley } 3822a1cf66bbSMatthew G. Knepley /* For finite volume, add the identity */ 3823a1cf66bbSMatthew G. Knepley if (!isFE[fieldI]) { 3824a1cf66bbSMatthew G. Knepley PetscFV fv; 3825a1cf66bbSMatthew G. Knepley PetscInt eOffset = 0, Nc, fc, foff; 3826a1cf66bbSMatthew G. Knepley 3827a1cf66bbSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, fieldI, &foff);CHKERRQ(ierr); 3828a1cf66bbSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldI, (PetscObject *) &fv);CHKERRQ(ierr); 3829a1cf66bbSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 3830a1cf66bbSMatthew G. Knepley for (c = 0; c < chunkSize; ++c, eOffset += totDim*totDim) { 3831a1cf66bbSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 3832a1cf66bbSMatthew G. Knepley const PetscInt i = foff + fc; 3833a1cf66bbSMatthew G. Knepley if (hasJac) {elemMat [eOffset+i*totDim+i] = 1.0;} 3834a1cf66bbSMatthew G. Knepley if (hasPrec) {elemMatP[eOffset+i*totDim+i] = 1.0;} 3835a1cf66bbSMatthew G. Knepley } 3836a1cf66bbSMatthew G. Knepley } 3837a1cf66bbSMatthew G. Knepley } 3838a1cf66bbSMatthew G. Knepley } 3839a1cf66bbSMatthew G. Knepley CHKMEMQ; 3840a1cf66bbSMatthew G. Knepley /* Add contribution from X_t */ 3841a1cf66bbSMatthew G. Knepley if (hasDyn) {for (c = 0; c < chunkSize*totDim*totDim; ++c) elemMat[c] += X_tShift*elemMatD[c];} 3842a1cf66bbSMatthew G. Knepley /* Insert values into matrix */ 3843a1cf66bbSMatthew G. Knepley for (c = 0; c < Ncell; ++c) { 3844a1cf66bbSMatthew G. Knepley const PetscInt cell = cells ? cells[c+offCell] : c+offCell; 3845a1cf66bbSMatthew G. Knepley if (mesh->printFEM > 1) { 3846a1cf66bbSMatthew G. Knepley if (hasJac) {ierr = DMPrintCellMatrix(cell, name, totDim, totDim, &elemMat[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3847a1cf66bbSMatthew G. Knepley if (hasPrec) {ierr = DMPrintCellMatrix(cell, nameP, totDim, totDim, &elemMatP[(c-cStart)*totDim*totDim]);CHKERRQ(ierr);} 3848a1cf66bbSMatthew G. Knepley } 3849a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = DMPlexMatSetClosure(dm, section, globalSection, Jac, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr);} 3850a1cf66bbSMatthew G. Knepley ierr = DMPlexMatSetClosure(dm, section, globalSection, JP, cell, &elemMat[(c-cStart)*totDim*totDim], ADD_VALUES);CHKERRQ(ierr); 3851a1cf66bbSMatthew G. Knepley } 3852a1cf66bbSMatthew G. Knepley CHKMEMQ; 3853a1cf66bbSMatthew G. Knepley } 3854a1cf66bbSMatthew G. Knepley /* Cleanup */ 3855a1cf66bbSMatthew G. Knepley ierr = DMSNESRestoreFEGeom(coordField, cellIS, qGeom, PETSC_FALSE, &cgeomFEM);CHKERRQ(ierr); 3856a1cf66bbSMatthew G. Knepley ierr = PetscQuadratureDestroy(&qGeom);CHKERRQ(ierr); 3857a1cf66bbSMatthew G. Knepley if (hasFV) {ierr = MatSetOption(JacP, MAT_IGNORE_ZERO_ENTRIES, PETSC_FALSE);CHKERRQ(ierr);} 3858a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, Nf, MPIU_BOOL, &isFE);CHKERRQ(ierr); 3859a1cf66bbSMatthew G. Knepley ierr = DMRestoreWorkArray(dm, ((1 + (X_t?1:0) + (dmAux?1:0))*totDim + ((hasJac?1:0) + (hasPrec?1:0) + (hasDyn?1:0))*totDim*totDim)*chunkSize, MPIU_SCALAR, &work);CHKERRQ(ierr); 3860a1cf66bbSMatthew G. Knepley /* Compute boundary integrals */ 3861a1cf66bbSMatthew G. Knepley /* ierr = DMPlexComputeBdJacobian_Internal(dm, X, X_t, t, X_tShift, Jac, JacP, ctx);CHKERRQ(ierr); */ 3862a1cf66bbSMatthew G. Knepley /* Assemble matrix */ 3863a1cf66bbSMatthew G. Knepley if (assembleJac) {ierr = MatAssemblyBegin(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(Jac, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);} 3864a1cf66bbSMatthew G. Knepley ierr = MatAssemblyBegin(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);ierr = MatAssemblyEnd(JacP, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3865a1cf66bbSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_JacobianFEM,dm,0,0,0);CHKERRQ(ierr); 3866a1cf66bbSMatthew G. Knepley CHKMEMQ; 3867a1cf66bbSMatthew G. Knepley PetscFunctionReturn(0); 3868a1cf66bbSMatthew G. Knepley } 3869