1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2da97024aSMatthew G. Knepley #include <petscsf.h> 3cb1e1211SMatthew G Knepley 4af0996ceSBarry Smith #include <petsc/private/petscfeimpl.h> 5af0996ceSBarry Smith #include <petsc/private/petscfvimpl.h> 6a0845e3aSMatthew G. Knepley 746fa42a0SMatthew G. Knepley /*@ 846fa42a0SMatthew G. Knepley DMPlexGetScale - Get the scale for the specified fundamental unit 946fa42a0SMatthew G. Knepley 1046fa42a0SMatthew G. Knepley Not collective 1146fa42a0SMatthew G. Knepley 1246fa42a0SMatthew G. Knepley Input Arguments: 1346fa42a0SMatthew G. Knepley + dm - the DM 1446fa42a0SMatthew G. Knepley - unit - The SI unit 1546fa42a0SMatthew G. Knepley 1646fa42a0SMatthew G. Knepley Output Argument: 1746fa42a0SMatthew G. Knepley . scale - The value used to scale all quantities with this unit 1846fa42a0SMatthew G. Knepley 1946fa42a0SMatthew G. Knepley Level: advanced 2046fa42a0SMatthew G. Knepley 2146fa42a0SMatthew G. Knepley .seealso: DMPlexSetScale(), PetscUnit 2246fa42a0SMatthew G. Knepley @*/ 23cb1e1211SMatthew G Knepley PetscErrorCode DMPlexGetScale(DM dm, PetscUnit unit, PetscReal *scale) 24cb1e1211SMatthew G Knepley { 25cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 26cb1e1211SMatthew G Knepley 27cb1e1211SMatthew G Knepley PetscFunctionBegin; 28cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29cb1e1211SMatthew G Knepley PetscValidPointer(scale, 3); 30cb1e1211SMatthew G Knepley *scale = mesh->scale[unit]; 31cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 32cb1e1211SMatthew G Knepley } 33cb1e1211SMatthew G Knepley 3446fa42a0SMatthew G. Knepley /*@ 3546fa42a0SMatthew G. Knepley DMPlexSetScale - Set the scale for the specified fundamental unit 3646fa42a0SMatthew G. Knepley 3746fa42a0SMatthew G. Knepley Not collective 3846fa42a0SMatthew G. Knepley 3946fa42a0SMatthew G. Knepley Input Arguments: 4046fa42a0SMatthew G. Knepley + dm - the DM 4146fa42a0SMatthew G. Knepley . unit - The SI unit 4246fa42a0SMatthew G. Knepley - scale - The value used to scale all quantities with this unit 4346fa42a0SMatthew G. Knepley 4446fa42a0SMatthew G. Knepley Level: advanced 4546fa42a0SMatthew G. Knepley 4646fa42a0SMatthew G. Knepley .seealso: DMPlexGetScale(), PetscUnit 4746fa42a0SMatthew G. Knepley @*/ 48cb1e1211SMatthew G Knepley PetscErrorCode DMPlexSetScale(DM dm, PetscUnit unit, PetscReal scale) 49cb1e1211SMatthew G Knepley { 50cb1e1211SMatthew G Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 51cb1e1211SMatthew G Knepley 52cb1e1211SMatthew G Knepley PetscFunctionBegin; 53cb1e1211SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54cb1e1211SMatthew G Knepley mesh->scale[unit] = scale; 55cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 56cb1e1211SMatthew G Knepley } 57cb1e1211SMatthew G Knepley 58cb1e1211SMatthew G Knepley PETSC_STATIC_INLINE PetscInt epsilon(PetscInt i, PetscInt j, PetscInt k) 59cb1e1211SMatthew G Knepley { 60cb1e1211SMatthew G Knepley switch (i) { 61cb1e1211SMatthew G Knepley case 0: 62cb1e1211SMatthew G Knepley switch (j) { 63cb1e1211SMatthew G Knepley case 0: return 0; 64cb1e1211SMatthew G Knepley case 1: 65cb1e1211SMatthew G Knepley switch (k) { 66cb1e1211SMatthew G Knepley case 0: return 0; 67cb1e1211SMatthew G Knepley case 1: return 0; 68cb1e1211SMatthew G Knepley case 2: return 1; 69cb1e1211SMatthew G Knepley } 70cb1e1211SMatthew G Knepley case 2: 71cb1e1211SMatthew G Knepley switch (k) { 72cb1e1211SMatthew G Knepley case 0: return 0; 73cb1e1211SMatthew G Knepley case 1: return -1; 74cb1e1211SMatthew G Knepley case 2: return 0; 75cb1e1211SMatthew G Knepley } 76cb1e1211SMatthew G Knepley } 77cb1e1211SMatthew G Knepley case 1: 78cb1e1211SMatthew G Knepley switch (j) { 79cb1e1211SMatthew G Knepley case 0: 80cb1e1211SMatthew G Knepley switch (k) { 81cb1e1211SMatthew G Knepley case 0: return 0; 82cb1e1211SMatthew G Knepley case 1: return 0; 83cb1e1211SMatthew G Knepley case 2: return -1; 84cb1e1211SMatthew G Knepley } 85cb1e1211SMatthew G Knepley case 1: return 0; 86cb1e1211SMatthew G Knepley case 2: 87cb1e1211SMatthew G Knepley switch (k) { 88cb1e1211SMatthew G Knepley case 0: return 1; 89cb1e1211SMatthew G Knepley case 1: return 0; 90cb1e1211SMatthew G Knepley case 2: return 0; 91cb1e1211SMatthew G Knepley } 92cb1e1211SMatthew G Knepley } 93cb1e1211SMatthew G Knepley case 2: 94cb1e1211SMatthew G Knepley switch (j) { 95cb1e1211SMatthew G Knepley case 0: 96cb1e1211SMatthew G Knepley switch (k) { 97cb1e1211SMatthew G Knepley case 0: return 0; 98cb1e1211SMatthew G Knepley case 1: return 1; 99cb1e1211SMatthew G Knepley case 2: return 0; 100cb1e1211SMatthew G Knepley } 101cb1e1211SMatthew G Knepley case 1: 102cb1e1211SMatthew G Knepley switch (k) { 103cb1e1211SMatthew G Knepley case 0: return -1; 104cb1e1211SMatthew G Knepley case 1: return 0; 105cb1e1211SMatthew G Knepley case 2: return 0; 106cb1e1211SMatthew G Knepley } 107cb1e1211SMatthew G Knepley case 2: return 0; 108cb1e1211SMatthew G Knepley } 109cb1e1211SMatthew G Knepley } 110cb1e1211SMatthew G Knepley return 0; 111cb1e1211SMatthew G Knepley } 112cb1e1211SMatthew G Knepley 113d1828a1cSMatthew G. Knepley static PetscErrorCode DMPlexProjectRigidBody_Private(PetscInt dim, PetscReal t, const PetscReal X[], PetscInt Nf, PetscScalar *mode, void *ctx) 114026175e5SToby Isaac { 115026175e5SToby Isaac PetscInt *ctxInt = (PetscInt *) ctx; 116ad917190SMatthew G. Knepley PetscInt dim2 = ctxInt[0]; 117026175e5SToby Isaac PetscInt d = ctxInt[1]; 118026175e5SToby Isaac PetscInt i, j, k = dim > 2 ? d - dim : d; 119026175e5SToby Isaac 120ad917190SMatthew G. Knepley PetscFunctionBegin; 121ad917190SMatthew G. Knepley if (dim != dim2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input dimension %d does not match context dimension %d", dim, dim2); 122026175e5SToby Isaac for (i = 0; i < dim; i++) mode[i] = 0.; 123026175e5SToby Isaac if (d < dim) { 124026175e5SToby Isaac mode[d] = 1.; 125ad917190SMatthew G. Knepley } else { 126026175e5SToby Isaac for (i = 0; i < dim; i++) { 127026175e5SToby Isaac for (j = 0; j < dim; j++) { 128026175e5SToby Isaac mode[j] += epsilon(i, j, k)*X[i]; 129026175e5SToby Isaac } 130026175e5SToby Isaac } 131026175e5SToby Isaac } 132ad917190SMatthew G. Knepley PetscFunctionReturn(0); 133026175e5SToby Isaac } 134026175e5SToby Isaac 135cb1e1211SMatthew G Knepley /*@C 136026175e5SToby Isaac DMPlexCreateRigidBody - for the default global section, create rigid body modes from coordinates 137cb1e1211SMatthew G Knepley 138cb1e1211SMatthew G Knepley Collective on DM 139cb1e1211SMatthew G Knepley 140cb1e1211SMatthew G Knepley Input Arguments: 141026175e5SToby Isaac . dm - the DM 142cb1e1211SMatthew G Knepley 143cb1e1211SMatthew G Knepley Output Argument: 144cb1e1211SMatthew G Knepley . sp - the null space 145cb1e1211SMatthew G Knepley 146cb1e1211SMatthew G Knepley Note: This is necessary to take account of Dirichlet conditions on the displacements 147cb1e1211SMatthew G Knepley 148cb1e1211SMatthew G Knepley Level: advanced 149cb1e1211SMatthew G Knepley 150cb1e1211SMatthew G Knepley .seealso: MatNullSpaceCreate() 151cb1e1211SMatthew G Knepley @*/ 152026175e5SToby Isaac PetscErrorCode DMPlexCreateRigidBody(DM dm, MatNullSpace *sp) 153cb1e1211SMatthew G Knepley { 154cb1e1211SMatthew G Knepley MPI_Comm comm; 155026175e5SToby Isaac Vec mode[6]; 156026175e5SToby Isaac PetscSection section, globalSection; 1579d8fbdeaSMatthew G. Knepley PetscInt dim, dimEmbed, n, m, d, i, j; 158cb1e1211SMatthew G Knepley PetscErrorCode ierr; 159cb1e1211SMatthew G Knepley 160cb1e1211SMatthew G Knepley PetscFunctionBegin; 161cb1e1211SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 162c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1639d8fbdeaSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 164cb1e1211SMatthew G Knepley if (dim == 1) { 165cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_TRUE, 0, NULL, sp);CHKERRQ(ierr); 166cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 167cb1e1211SMatthew G Knepley } 168026175e5SToby Isaac ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 169026175e5SToby Isaac ierr = DMGetDefaultGlobalSection(dm, &globalSection);CHKERRQ(ierr); 170cb1e1211SMatthew G Knepley ierr = PetscSectionGetConstrainedStorageSize(globalSection, &n);CHKERRQ(ierr); 171cb1e1211SMatthew G Knepley m = (dim*(dim+1))/2; 172cb1e1211SMatthew G Knepley ierr = VecCreate(comm, &mode[0]);CHKERRQ(ierr); 173cb1e1211SMatthew G Knepley ierr = VecSetSizes(mode[0], n, PETSC_DETERMINE);CHKERRQ(ierr); 174cb1e1211SMatthew G Knepley ierr = VecSetUp(mode[0]);CHKERRQ(ierr); 175cb1e1211SMatthew G Knepley for (i = 1; i < m; ++i) {ierr = VecDuplicate(mode[0], &mode[i]);CHKERRQ(ierr);} 176026175e5SToby Isaac for (d = 0; d < m; d++) { 177330485fdSToby Isaac PetscInt ctx[2]; 178d1828a1cSMatthew G. Knepley PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal *, PetscInt, PetscScalar *, void *) = DMPlexProjectRigidBody_Private; 179026175e5SToby Isaac void *voidctx = (void *) (&ctx[0]); 180cb1e1211SMatthew G Knepley 1819d8fbdeaSMatthew G. Knepley ctx[0] = dimEmbed; 182330485fdSToby Isaac ctx[1] = d; 1830709b2feSToby Isaac ierr = DMProjectFunction(dm, 0.0, &func, &voidctx, INSERT_VALUES, mode[d]);CHKERRQ(ierr); 184cb1e1211SMatthew G Knepley } 185cb1e1211SMatthew G Knepley for (i = 0; i < dim; ++i) {ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr);} 186cb1e1211SMatthew G Knepley /* Orthonormalize system */ 187cb1e1211SMatthew G Knepley for (i = dim; i < m; ++i) { 188cb1e1211SMatthew G Knepley PetscScalar dots[6]; 189cb1e1211SMatthew G Knepley 190cb1e1211SMatthew G Knepley ierr = VecMDot(mode[i], i, mode, dots);CHKERRQ(ierr); 191cb1e1211SMatthew G Knepley for (j = 0; j < i; ++j) dots[j] *= -1.0; 192cb1e1211SMatthew G Knepley ierr = VecMAXPY(mode[i], i, dots, mode);CHKERRQ(ierr); 193cb1e1211SMatthew G Knepley ierr = VecNormalize(mode[i], NULL);CHKERRQ(ierr); 194cb1e1211SMatthew G Knepley } 195cb1e1211SMatthew G Knepley ierr = MatNullSpaceCreate(comm, PETSC_FALSE, m, mode, sp);CHKERRQ(ierr); 196cb1e1211SMatthew G Knepley for (i = 0; i< m; ++i) {ierr = VecDestroy(&mode[i]);CHKERRQ(ierr);} 197cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 198cb1e1211SMatthew G Knepley } 199cb1e1211SMatthew G Knepley 200b29cfa1cSToby Isaac /*@ 201b29cfa1cSToby Isaac DMPlexSetMaxProjectionHeight - In DMPlexProjectXXXLocal() functions, the projected values of a basis function's dofs 202b29cfa1cSToby Isaac are computed by associating the basis function with one of the mesh points in its transitively-closed support, and 203b29cfa1cSToby Isaac evaluating the dual space basis of that point. A basis function is associated with the point in its 204b29cfa1cSToby Isaac transitively-closed support whose mesh height is highest (w.r.t. DAG height), but not greater than the maximum 205b29cfa1cSToby Isaac projection height, which is set with this function. By default, the maximum projection height is zero, which means 206b29cfa1cSToby Isaac that only mesh cells are used to project basis functions. A height of one, for example, evaluates a cell-interior 207b29cfa1cSToby Isaac basis functions using its cells dual space basis, but all other basis functions with the dual space basis of a face. 208b29cfa1cSToby Isaac 209b29cfa1cSToby Isaac Input Parameters: 210b29cfa1cSToby Isaac + dm - the DMPlex object 211b29cfa1cSToby Isaac - height - the maximum projection height >= 0 212b29cfa1cSToby Isaac 213b29cfa1cSToby Isaac Level: advanced 214b29cfa1cSToby Isaac 2154d6f44ffSToby Isaac .seealso: DMPlexGetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 216b29cfa1cSToby Isaac @*/ 217b29cfa1cSToby Isaac PetscErrorCode DMPlexSetMaxProjectionHeight(DM dm, PetscInt height) 218b29cfa1cSToby Isaac { 219b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 220b29cfa1cSToby Isaac 221b29cfa1cSToby Isaac PetscFunctionBegin; 222b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 223b29cfa1cSToby Isaac plex->maxProjectionHeight = height; 224b29cfa1cSToby Isaac PetscFunctionReturn(0); 225b29cfa1cSToby Isaac } 226b29cfa1cSToby Isaac 227b29cfa1cSToby Isaac /*@ 228b29cfa1cSToby Isaac DMPlexGetMaxProjectionHeight - Get the maximum height (w.r.t. DAG) of mesh points used to evaluate dual bases in 229b29cfa1cSToby Isaac DMPlexProjectXXXLocal() functions. 230b29cfa1cSToby Isaac 231b29cfa1cSToby Isaac Input Parameters: 232b29cfa1cSToby Isaac . dm - the DMPlex object 233b29cfa1cSToby Isaac 234b29cfa1cSToby Isaac Output Parameters: 235b29cfa1cSToby Isaac . height - the maximum projection height 236b29cfa1cSToby Isaac 237b29cfa1cSToby Isaac Level: intermediate 238b29cfa1cSToby Isaac 2394d6f44ffSToby Isaac .seealso: DMPlexSetMaxProjectionHeight(), DMProjectFunctionLocal(), DMProjectFunctionLabelLocal() 240b29cfa1cSToby Isaac @*/ 241b29cfa1cSToby Isaac PetscErrorCode DMPlexGetMaxProjectionHeight(DM dm, PetscInt *height) 242b29cfa1cSToby Isaac { 243b29cfa1cSToby Isaac DM_Plex *plex = (DM_Plex *) dm->data; 244b29cfa1cSToby Isaac 245b29cfa1cSToby Isaac PetscFunctionBegin; 246b29cfa1cSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 247b29cfa1cSToby Isaac *height = plex->maxProjectionHeight; 248b29cfa1cSToby Isaac PetscFunctionReturn(0); 249b29cfa1cSToby Isaac } 250b29cfa1cSToby Isaac 2510163fd50SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_Internal(DM dm, PetscReal time, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *ctx, Vec locX) 25255f2e967SMatthew G. Knepley { 2530163fd50SMatthew G. Knepley PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 25455f2e967SMatthew G. Knepley void **ctxs; 255d7ddef95SMatthew G. Knepley PetscInt numFields; 256d7ddef95SMatthew G. Knepley PetscErrorCode ierr; 257d7ddef95SMatthew G. Knepley 258d7ddef95SMatthew G. Knepley PetscFunctionBegin; 259d7ddef95SMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 260d7ddef95SMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 261d7ddef95SMatthew G. Knepley funcs[field] = func; 262d7ddef95SMatthew G. Knepley ctxs[field] = ctx; 2630709b2feSToby Isaac ierr = DMProjectFunctionLabelLocal(dm, time, label, numids, ids, funcs, ctxs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 264d7ddef95SMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 265d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 266d7ddef95SMatthew G. Knepley } 267d7ddef95SMatthew G. Knepley 268c60e475cSMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FEM_AuxField_Internal(DM dm, PetscReal time, Vec locU, PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], 269c60e475cSMatthew G. Knepley void (*func)(PetscInt, PetscInt, PetscInt, 270c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 271c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 272c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]), void *ctx, Vec locX) 273c60e475cSMatthew G. Knepley { 274c60e475cSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 275c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 276c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 277c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[]); 278c60e475cSMatthew G. Knepley void **ctxs; 279c60e475cSMatthew G. Knepley PetscInt numFields; 280c60e475cSMatthew G. Knepley PetscErrorCode ierr; 281c60e475cSMatthew G. Knepley 282c60e475cSMatthew G. Knepley PetscFunctionBegin; 283c60e475cSMatthew G. Knepley ierr = DMGetNumFields(dm, &numFields);CHKERRQ(ierr); 284c60e475cSMatthew G. Knepley ierr = PetscCalloc2(numFields,&funcs,numFields,&ctxs);CHKERRQ(ierr); 285c60e475cSMatthew G. Knepley funcs[field] = func; 286c60e475cSMatthew G. Knepley ctxs[field] = ctx; 287c60e475cSMatthew G. Knepley ierr = DMProjectFieldLabelLocal(dm, time, label, numids, ids, locU, funcs, INSERT_BC_VALUES, locX);CHKERRQ(ierr); 288c60e475cSMatthew G. Knepley ierr = PetscFree2(funcs,ctxs);CHKERRQ(ierr); 289c60e475cSMatthew G. Knepley PetscFunctionReturn(0); 290c60e475cSMatthew G. Knepley } 291c60e475cSMatthew G. Knepley 2920e0f25f2SMatthew G. Knepley /* This ignores numcomps/comps */ 293d7ddef95SMatthew G. Knepley static PetscErrorCode DMPlexInsertBoundaryValues_FVM_Internal(DM dm, PetscReal time, Vec faceGeometry, Vec cellGeometry, Vec Grad, 294d7ddef95SMatthew G. Knepley PetscInt field, DMLabel label, PetscInt numids, const PetscInt ids[], PetscErrorCode (*func)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *ctx, Vec locX) 295d7ddef95SMatthew G. Knepley { 29661f58d28SMatthew G. Knepley PetscDS prob; 297da97024aSMatthew G. Knepley PetscSF sf; 298d7ddef95SMatthew G. Knepley DM dmFace, dmCell, dmGrad; 29920369375SToby Isaac const PetscScalar *facegeom, *cellgeom = NULL, *grad; 300da97024aSMatthew G. Knepley const PetscInt *leaves; 301d7ddef95SMatthew G. Knepley PetscScalar *x, *fx; 302520b3818SMatthew G. Knepley PetscInt dim, nleaves, loc, fStart, fEnd, pdim, i; 303e735a8a9SMatthew G. Knepley PetscErrorCode ierr, ierru = 0; 304d7ddef95SMatthew G. Knepley 305d7ddef95SMatthew G. Knepley PetscFunctionBegin; 306da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 307da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 308da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 309d7ddef95SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 310d7ddef95SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 31161f58d28SMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 312d7ddef95SMatthew G. Knepley ierr = VecGetDM(faceGeometry, &dmFace);CHKERRQ(ierr); 313d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 31420369375SToby Isaac if (cellGeometry) { 315d7ddef95SMatthew G. Knepley ierr = VecGetDM(cellGeometry, &dmCell);CHKERRQ(ierr); 316d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr); 31720369375SToby Isaac } 318d7ddef95SMatthew G. Knepley if (Grad) { 319c0a6632aSMatthew G. Knepley PetscFV fv; 320c0a6632aSMatthew G. Knepley 321c0a6632aSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fv);CHKERRQ(ierr); 322d7ddef95SMatthew G. Knepley ierr = VecGetDM(Grad, &dmGrad);CHKERRQ(ierr); 323d7ddef95SMatthew G. Knepley ierr = VecGetArrayRead(Grad, &grad);CHKERRQ(ierr); 324d7ddef95SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &pdim);CHKERRQ(ierr); 325d7ddef95SMatthew G. Knepley ierr = DMGetWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 326d7ddef95SMatthew G. Knepley } 327d7ddef95SMatthew G. Knepley ierr = VecGetArray(locX, &x);CHKERRQ(ierr); 328d7ddef95SMatthew G. Knepley for (i = 0; i < numids; ++i) { 329d7ddef95SMatthew G. Knepley IS faceIS; 330d7ddef95SMatthew G. Knepley const PetscInt *faces; 331d7ddef95SMatthew G. Knepley PetscInt numFaces, f; 332d7ddef95SMatthew G. Knepley 333d7ddef95SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, ids[i], &faceIS);CHKERRQ(ierr); 334d7ddef95SMatthew G. Knepley if (!faceIS) continue; /* No points with that id on this process */ 335d7ddef95SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 336d7ddef95SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 337d7ddef95SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 338d7ddef95SMatthew G. Knepley const PetscInt face = faces[f], *cells; 339640bce14SSatish Balay PetscFVFaceGeom *fg; 340d7ddef95SMatthew G. Knepley 341d7ddef95SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; /* Refinement adds non-faces to labels */ 342da97024aSMatthew G. Knepley ierr = PetscFindInt(face, nleaves, (PetscInt *) leaves, &loc);CHKERRQ(ierr); 343da97024aSMatthew G. Knepley if (loc >= 0) continue; 344d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmFace, face, facegeom, &fg);CHKERRQ(ierr); 345d7ddef95SMatthew G. Knepley ierr = DMPlexGetSupport(dm, face, &cells);CHKERRQ(ierr); 346d7ddef95SMatthew G. Knepley if (Grad) { 347640bce14SSatish Balay PetscFVCellGeom *cg; 348640bce14SSatish Balay PetscScalar *cx, *cgrad; 349d7ddef95SMatthew G. Knepley PetscScalar *xG; 350d7ddef95SMatthew G. Knepley PetscReal dx[3]; 351d7ddef95SMatthew G. Knepley PetscInt d; 352d7ddef95SMatthew G. Knepley 353d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmCell, cells[0], cellgeom, &cg);CHKERRQ(ierr); 354d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &cx);CHKERRQ(ierr); 355d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, cells[0], grad, &cgrad);CHKERRQ(ierr); 356520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 357d7ddef95SMatthew G. Knepley DMPlex_WaxpyD_Internal(dim, -1, cg->centroid, fg->centroid, dx); 358d7ddef95SMatthew G. Knepley for (d = 0; d < pdim; ++d) fx[d] = cx[d] + DMPlex_DotD_Internal(dim, &cgrad[d*dim], dx); 359e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, fx, xG, ctx); 360e735a8a9SMatthew G. Knepley if (ierru) { 361e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 362e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 363e735a8a9SMatthew G. Knepley goto cleanup; 364e735a8a9SMatthew G. Knepley } 365d7ddef95SMatthew G. Knepley } else { 366640bce14SSatish Balay PetscScalar *xI; 367d7ddef95SMatthew G. Knepley PetscScalar *xG; 368d7ddef95SMatthew G. Knepley 369d7ddef95SMatthew G. Knepley ierr = DMPlexPointLocalRead(dm, cells[0], x, &xI);CHKERRQ(ierr); 370520b3818SMatthew G. Knepley ierr = DMPlexPointLocalFieldRef(dm, cells[1], field, x, &xG);CHKERRQ(ierr); 371e735a8a9SMatthew G. Knepley ierru = (*func)(time, fg->centroid, fg->normal, xI, xG, ctx); 372e735a8a9SMatthew G. Knepley if (ierru) { 373e735a8a9SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 374e735a8a9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 375e735a8a9SMatthew G. Knepley goto cleanup; 376e735a8a9SMatthew G. Knepley } 377d7ddef95SMatthew G. Knepley } 378d7ddef95SMatthew G. Knepley } 379d7ddef95SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 380d7ddef95SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 381d7ddef95SMatthew G. Knepley } 382e735a8a9SMatthew G. Knepley cleanup: 383d7ddef95SMatthew G. Knepley ierr = VecRestoreArray(locX, &x);CHKERRQ(ierr); 384d7ddef95SMatthew G. Knepley if (Grad) { 385d7ddef95SMatthew G. Knepley ierr = DMRestoreWorkArray(dm, pdim, PETSC_SCALAR, &fx);CHKERRQ(ierr); 386d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(Grad, &grad);CHKERRQ(ierr); 387d7ddef95SMatthew G. Knepley } 388e735a8a9SMatthew G. Knepley if (cellGeometry) {ierr = VecRestoreArrayRead(cellGeometry, &cellgeom);CHKERRQ(ierr);} 389d7ddef95SMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometry, &facegeom);CHKERRQ(ierr); 390e735a8a9SMatthew G. Knepley CHKERRQ(ierru); 391d7ddef95SMatthew G. Knepley PetscFunctionReturn(0); 392d7ddef95SMatthew G. Knepley } 393d7ddef95SMatthew G. Knepley 394*f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues_Plex(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 395d7ddef95SMatthew G. Knepley { 396d7ddef95SMatthew G. Knepley PetscInt numBd, b; 39755f2e967SMatthew G. Knepley PetscErrorCode ierr; 39855f2e967SMatthew G. Knepley 39955f2e967SMatthew G. Knepley PetscFunctionBegin; 400dff059c6SToby Isaac ierr = PetscDSGetNumBoundary(dm->prob, &numBd);CHKERRQ(ierr); 40155f2e967SMatthew G. Knepley for (b = 0; b < numBd; ++b) { 402f971fd6bSMatthew G. Knepley DMBoundaryConditionType type; 403d7ddef95SMatthew G. Knepley const char *labelname; 404d7ddef95SMatthew G. Knepley DMLabel label; 405d7ddef95SMatthew G. Knepley PetscInt field; 406d7ddef95SMatthew G. Knepley PetscObject obj; 407d7ddef95SMatthew G. Knepley PetscClassId id; 408a30ec4eaSSatish Balay void (*func)(void); 409d7ddef95SMatthew G. Knepley PetscInt numids; 410d7ddef95SMatthew G. Knepley const PetscInt *ids; 41155f2e967SMatthew G. Knepley void *ctx; 41255f2e967SMatthew G. Knepley 413f971fd6bSMatthew G. Knepley ierr = DMGetBoundary(dm, b, &type, NULL, &labelname, &field, NULL, NULL, &func, &numids, &ids, &ctx);CHKERRQ(ierr); 414f971fd6bSMatthew G. Knepley if (insertEssential != (type & DM_BC_ESSENTIAL)) continue; 415c58f1c22SToby Isaac ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr); 416d7ddef95SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 417d7ddef95SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 418d7ddef95SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 419c60e475cSMatthew G. Knepley switch (type) { 420c60e475cSMatthew G. Knepley /* for FEM, there is no insertion to be done for non-essential boundary conditions */ 421c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL: 422092e5057SToby Isaac ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 4230163fd50SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_Internal(dm, time, field, label, numids, ids, (PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *)) func, ctx, locX);CHKERRQ(ierr); 424092e5057SToby Isaac ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 425c60e475cSMatthew G. Knepley break; 426c60e475cSMatthew G. Knepley case DM_BC_ESSENTIAL_FIELD: 427c60e475cSMatthew G. Knepley ierr = DMPlexLabelAddCells(dm,label);CHKERRQ(ierr); 428c60e475cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FEM_AuxField_Internal(dm, time, locX, field, label, numids, ids, (void (*)(PetscInt, PetscInt, PetscInt, 429c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 430c60e475cSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 431c60e475cSMatthew G. Knepley PetscReal, const PetscReal[], PetscScalar[])) func, ctx, locX);CHKERRQ(ierr); 432c60e475cSMatthew G. Knepley ierr = DMPlexLabelClearCells(dm,label);CHKERRQ(ierr); 433c60e475cSMatthew G. Knepley break; 434c60e475cSMatthew G. Knepley default: break; 435c60e475cSMatthew G. Knepley } 436d7ddef95SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 43743ea7facSMatthew G. Knepley if (!faceGeomFVM) continue; 438d7ddef95SMatthew G. Knepley ierr = DMPlexInsertBoundaryValues_FVM_Internal(dm, time, faceGeomFVM, cellGeomFVM, gradFVM, 439d7ddef95SMatthew G. Knepley field, label, numids, ids, (PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*)) func, ctx, locX);CHKERRQ(ierr); 440d7ddef95SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 44155f2e967SMatthew G. Knepley } 44255f2e967SMatthew G. Knepley PetscFunctionReturn(0); 44355f2e967SMatthew G. Knepley } 44455f2e967SMatthew G. Knepley 445*f1d73a7aSMatthew G. Knepley /*@ 446*f1d73a7aSMatthew G. Knepley DMPlexInsertBoundaryValues - Puts coefficients which represent boundary values into the local solution vector 447*f1d73a7aSMatthew G. Knepley 448*f1d73a7aSMatthew G. Knepley Input Parameters: 449*f1d73a7aSMatthew G. Knepley + dm - The DM 450*f1d73a7aSMatthew G. Knepley . insertEssential - Should I insert essential (e.g. Dirichlet) or inessential (e.g. Neumann) boundary conditions 451*f1d73a7aSMatthew G. Knepley . time - The time 452*f1d73a7aSMatthew G. Knepley . faceGeomFVM - Face geometry data for FV discretizations 453*f1d73a7aSMatthew G. Knepley . cellGeomFVM - Cell geometry data for FV discretizations 454*f1d73a7aSMatthew G. Knepley - gradFVM - Gradient reconstruction data for FV discretizations 455*f1d73a7aSMatthew G. Knepley 456*f1d73a7aSMatthew G. Knepley Output Parameters: 457*f1d73a7aSMatthew G. Knepley . locX - Solution updated with boundary values 458*f1d73a7aSMatthew G. Knepley 459*f1d73a7aSMatthew G. Knepley Level: developer 460*f1d73a7aSMatthew G. Knepley 461*f1d73a7aSMatthew G. Knepley .seealso: DMProjectFunctionLabelLocal() 462*f1d73a7aSMatthew G. Knepley @*/ 463*f1d73a7aSMatthew G. Knepley PetscErrorCode DMPlexInsertBoundaryValues(DM dm, PetscBool insertEssential, Vec locX, PetscReal time, Vec faceGeomFVM, Vec cellGeomFVM, Vec gradFVM) 464*f1d73a7aSMatthew G. Knepley { 465*f1d73a7aSMatthew G. Knepley PetscErrorCode ierr; 466*f1d73a7aSMatthew G. Knepley 467*f1d73a7aSMatthew G. Knepley PetscFunctionBegin; 468*f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 469*f1d73a7aSMatthew G. Knepley PetscValidHeaderSpecific(locX, VEC_CLASSID, 2); 470*f1d73a7aSMatthew G. Knepley if (faceGeomFVM) {PetscValidHeaderSpecific(faceGeomFVM, VEC_CLASSID, 4);} 471*f1d73a7aSMatthew G. Knepley if (cellGeomFVM) {PetscValidHeaderSpecific(cellGeomFVM, VEC_CLASSID, 5);} 472*f1d73a7aSMatthew G. Knepley if (gradFVM) {PetscValidHeaderSpecific(gradFVM, VEC_CLASSID, 6);} 473*f1d73a7aSMatthew G. Knepley ierr = PetscTryMethod(dm,"DMPlexInsertBoundaryValues_C",(DM,PetscBool,Vec,PetscReal,Vec,Vec,Vec),(dm,insertEssential,locX,time,faceGeomFVM,cellGeomFVM,gradFVM));CHKERRQ(ierr); 474*f1d73a7aSMatthew G. Knepley PetscFunctionReturn(0); 475*f1d73a7aSMatthew G. Knepley } 476*f1d73a7aSMatthew G. Knepley 4770709b2feSToby Isaac PetscErrorCode DMComputeL2Diff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 478cb1e1211SMatthew G Knepley { 479cb1e1211SMatthew G Knepley const PetscInt debug = 0; 480cb1e1211SMatthew G Knepley PetscSection section; 481c5bbbd5bSMatthew G. Knepley PetscQuadrature quad; 482cb1e1211SMatthew G Knepley Vec localX; 48315496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 4847318780aSToby Isaac PetscReal *coords, *detJ, *J; 485cb1e1211SMatthew G Knepley PetscReal localDiff = 0.0; 4867318780aSToby Isaac const PetscReal *quadWeights; 4877318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 488cb1e1211SMatthew G Knepley PetscErrorCode ierr; 489cb1e1211SMatthew G Knepley 490cb1e1211SMatthew G Knepley PetscFunctionBegin; 491c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 4927318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 493cb1e1211SMatthew G Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 494cb1e1211SMatthew G Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 495cb1e1211SMatthew G Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 496bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 497cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 498cb1e1211SMatthew G Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 499cb1e1211SMatthew G Knepley for (field = 0; field < numFields; ++field) { 50015496722SMatthew G. Knepley PetscObject obj; 50115496722SMatthew G. Knepley PetscClassId id; 502c5bbbd5bSMatthew G. Knepley PetscInt Nc; 503c5bbbd5bSMatthew G. Knepley 50415496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 50515496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 50615496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 50715496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 50815496722SMatthew G. Knepley 5090f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 5100f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 51115496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 51215496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 51315496722SMatthew G. Knepley 51415496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 51515496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 51615496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 517c5bbbd5bSMatthew G. Knepley numComponents += Nc; 518cb1e1211SMatthew G Knepley } 5197318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, &quadWeights);CHKERRQ(ierr); 5207318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 521cb1e1211SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 5229ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 5239ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 524cb1e1211SMatthew G Knepley for (c = cStart; c < cEnd; ++c) { 525a1e44745SMatthew G. Knepley PetscScalar *x = NULL; 526cb1e1211SMatthew G Knepley PetscReal elemDiff = 0.0; 527cb1e1211SMatthew G Knepley 5287318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 529cb1e1211SMatthew G Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 530cb1e1211SMatthew G Knepley 53115496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 53215496722SMatthew G. Knepley PetscObject obj; 53315496722SMatthew G. Knepley PetscClassId id; 534c110b1eeSGeoffrey Irving void * const ctx = ctxs ? ctxs[field] : NULL; 53515496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 536cb1e1211SMatthew G Knepley 53715496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 53815496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 53915496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 54015496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 54115496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 542cb1e1211SMatthew G Knepley if (debug) { 543cb1e1211SMatthew G Knepley char title[1024]; 544cb1e1211SMatthew G Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 54515496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 546cb1e1211SMatthew G Knepley } 5477318780aSToby Isaac for (q = 0; q < Nq; ++q) { 5487318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, point %D", detJ[q], c, q); 5497318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim * q], Nc, funcVal, ctx); 550e735a8a9SMatthew G. Knepley if (ierr) { 551e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 552e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 553e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 5547318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 555e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 556e735a8a9SMatthew G. Knepley } 55715496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 55815496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 55915496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 56015496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 5617318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 5627318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 563cb1e1211SMatthew G Knepley } 564cb1e1211SMatthew G Knepley } 56515496722SMatthew G. Knepley fieldOffset += Nb*Nc; 566cb1e1211SMatthew G Knepley } 567cb1e1211SMatthew G Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 568cb1e1211SMatthew G Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 569cb1e1211SMatthew G Knepley localDiff += elemDiff; 570cb1e1211SMatthew G Knepley } 5717318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 572cb1e1211SMatthew G Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 573b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 574cb1e1211SMatthew G Knepley *diff = PetscSqrtReal(*diff); 575cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 576cb1e1211SMatthew G Knepley } 577cb1e1211SMatthew G Knepley 578b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 579cb1e1211SMatthew G Knepley { 58040e14135SMatthew G. Knepley const PetscInt debug = 0; 581cb1e1211SMatthew G Knepley PetscSection section; 58240e14135SMatthew G. Knepley PetscQuadrature quad; 58340e14135SMatthew G. Knepley Vec localX; 58440e14135SMatthew G. Knepley PetscScalar *funcVal, *interpolantVec; 5857318780aSToby Isaac PetscReal *coords, *realSpaceDer, *J, *invJ, *detJ; 58640e14135SMatthew G. Knepley PetscReal localDiff = 0.0; 5877318780aSToby Isaac PetscInt dim, coordDim, Nq = 0, numFields, numComponents = 0, cStart, cEnd, cEndInterior, c, field, fieldOffset, comp; 588cb1e1211SMatthew G Knepley PetscErrorCode ierr; 589cb1e1211SMatthew G Knepley 590cb1e1211SMatthew G Knepley PetscFunctionBegin; 591c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 5927318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 59340e14135SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 59440e14135SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 59540e14135SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 59640e14135SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 59740e14135SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 598652b88e8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 5990f2d7e86SMatthew G. Knepley PetscFE fe; 60040e14135SMatthew G. Knepley PetscInt Nc; 601652b88e8SMatthew G. Knepley 6020f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 6030f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 6047318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 6050f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 60640e14135SMatthew G. Knepley numComponents += Nc; 607652b88e8SMatthew G. Knepley } 6084d6f44ffSToby Isaac /* ierr = DMProjectFunctionLocal(dm, fe, funcs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); */ 6097318780aSToby Isaac ierr = PetscMalloc7(numComponents,&funcVal,coordDim*Nq,&coords,coordDim*Nq,&realSpaceDer,coordDim*coordDim*Nq,&J,coordDim*coordDim*Nq,&invJ,coordDim,&interpolantVec,Nq,&detJ);CHKERRQ(ierr); 61040e14135SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 6119ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 6129ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 61340e14135SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 61440e14135SMatthew G. Knepley PetscScalar *x = NULL; 61540e14135SMatthew G. Knepley PetscReal elemDiff = 0.0; 616652b88e8SMatthew G. Knepley 6177318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, invJ, detJ);CHKERRQ(ierr); 61840e14135SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 61940e14135SMatthew G. Knepley 62040e14135SMatthew G. Knepley for (field = 0, comp = 0, fieldOffset = 0; field < numFields; ++field) { 6210f2d7e86SMatthew G. Knepley PetscFE fe; 62251259fa3SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 62321454ff5SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 62440e14135SMatthew G. Knepley PetscReal *basisDer; 6257318780aSToby Isaac PetscInt numQuadPoints, Nb, Ncomp, q, d, fc, f, g; 62640e14135SMatthew G. Knepley 6270f2d7e86SMatthew G. Knepley ierr = DMGetField(dm, field, (PetscObject *) &fe);CHKERRQ(ierr); 62821454ff5SMatthew G. Knepley ierr = PetscQuadratureGetData(quad, NULL, &numQuadPoints, &quadPoints, &quadWeights);CHKERRQ(ierr); 6290f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 6300f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Ncomp);CHKERRQ(ierr); 6310f2d7e86SMatthew G. Knepley ierr = PetscFEGetDefaultTabulation(fe, NULL, &basisDer, NULL);CHKERRQ(ierr); 63240e14135SMatthew G. Knepley if (debug) { 63340e14135SMatthew G. Knepley char title[1024]; 63440e14135SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 63540e14135SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Ncomp, &x[fieldOffset]);CHKERRQ(ierr); 636652b88e8SMatthew G. Knepley } 63740e14135SMatthew G. Knepley for (q = 0; q < numQuadPoints; ++q) { 6387318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 6397318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[q*coordDim], n, numFields, funcVal, ctx); 640e735a8a9SMatthew G. Knepley if (ierr) { 641e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 642e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 643e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 6447318780aSToby Isaac ierr2 = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr2); 645e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 646e735a8a9SMatthew G. Knepley } 64740e14135SMatthew G. Knepley for (fc = 0; fc < Ncomp; ++fc) { 64840e14135SMatthew G. Knepley PetscScalar interpolant = 0.0; 64940e14135SMatthew G. Knepley 6507318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolantVec[d] = 0.0; 65140e14135SMatthew G. Knepley for (f = 0; f < Nb; ++f) { 65240e14135SMatthew G. Knepley const PetscInt fidx = f*Ncomp+fc; 65340e14135SMatthew G. Knepley 6547318780aSToby Isaac for (d = 0; d < coordDim; ++d) { 65540e14135SMatthew G. Knepley realSpaceDer[d] = 0.0; 65640e14135SMatthew G. Knepley for (g = 0; g < dim; ++g) { 6577318780aSToby Isaac realSpaceDer[d] += invJ[coordDim * coordDim * q + g*coordDim+d]*basisDer[(q*Nb*Ncomp+fidx)*dim+g]; 65840e14135SMatthew G. Knepley } 65940e14135SMatthew G. Knepley interpolantVec[d] += x[fieldOffset+fidx]*realSpaceDer[d]; 66040e14135SMatthew G. Knepley } 66140e14135SMatthew G. Knepley } 6627318780aSToby Isaac for (d = 0; d < coordDim; ++d) interpolant += interpolantVec[d]*n[d]; 6637318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d fieldDer %d diff %g\n", c, field, PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 6647318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant - funcVal[fc]))*quadWeights[q]*detJ[q]; 66540e14135SMatthew G. Knepley } 66640e14135SMatthew G. Knepley } 66740e14135SMatthew G. Knepley comp += Ncomp; 66840e14135SMatthew G. Knepley fieldOffset += Nb*Ncomp; 66940e14135SMatthew G. Knepley } 67040e14135SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 67140e14135SMatthew G. Knepley if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d diff %g\n", c, elemDiff);CHKERRQ(ierr);} 67240e14135SMatthew G. Knepley localDiff += elemDiff; 67340e14135SMatthew G. Knepley } 6747318780aSToby Isaac ierr = PetscFree7(funcVal,coords,realSpaceDer,J,invJ,interpolantVec,detJ);CHKERRQ(ierr); 67540e14135SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 676b2566f29SBarry Smith ierr = MPIU_Allreduce(&localDiff, diff, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 67740e14135SMatthew G. Knepley *diff = PetscSqrtReal(*diff); 678cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 679cb1e1211SMatthew G Knepley } 680cb1e1211SMatthew G Knepley 681c6eecec3SToby Isaac PetscErrorCode DMComputeL2FieldDiff_Plex(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 68273d901b8SMatthew G. Knepley { 68373d901b8SMatthew G. Knepley const PetscInt debug = 0; 68473d901b8SMatthew G. Knepley PetscSection section; 68573d901b8SMatthew G. Knepley PetscQuadrature quad; 68673d901b8SMatthew G. Knepley Vec localX; 68715496722SMatthew G. Knepley PetscScalar *funcVal, *interpolant; 6887318780aSToby Isaac PetscReal *coords, *detJ, *J; 68973d901b8SMatthew G. Knepley PetscReal *localDiff; 69015496722SMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 6917318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 69273d901b8SMatthew G. Knepley PetscErrorCode ierr; 69373d901b8SMatthew G. Knepley 69473d901b8SMatthew G. Knepley PetscFunctionBegin; 695c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 6967318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 69773d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 69873d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 69973d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 700bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 70173d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 70273d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 70373d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) { 70415496722SMatthew G. Knepley PetscObject obj; 70515496722SMatthew G. Knepley PetscClassId id; 70673d901b8SMatthew G. Knepley PetscInt Nc; 70773d901b8SMatthew G. Knepley 70815496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 70915496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 71015496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 71115496722SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 71215496722SMatthew G. Knepley 7130f2d7e86SMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 7140f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 71515496722SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 71615496722SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 71715496722SMatthew G. Knepley 71815496722SMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 71915496722SMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 72015496722SMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 72173d901b8SMatthew G. Knepley numComponents += Nc; 72273d901b8SMatthew G. Knepley } 7237318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 7247318780aSToby Isaac ierr = PetscCalloc6(numFields,&localDiff,numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 72573d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 7269ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 7279ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 72873d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 72973d901b8SMatthew G. Knepley PetscScalar *x = NULL; 73073d901b8SMatthew G. Knepley 7317318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 73273d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 73373d901b8SMatthew G. Knepley 73415496722SMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 73515496722SMatthew G. Knepley PetscObject obj; 73615496722SMatthew G. Knepley PetscClassId id; 73773d901b8SMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 73815496722SMatthew G. Knepley PetscInt Nb, Nc, q, fc; 73973d901b8SMatthew G. Knepley 74015496722SMatthew G. Knepley PetscReal elemDiff = 0.0; 74115496722SMatthew G. Knepley 74215496722SMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 74315496722SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 74415496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 74515496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 74615496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 74773d901b8SMatthew G. Knepley if (debug) { 74873d901b8SMatthew G. Knepley char title[1024]; 74973d901b8SMatthew G. Knepley ierr = PetscSNPrintf(title, 1023, "Solution for Field %d", field);CHKERRQ(ierr); 75015496722SMatthew G. Knepley ierr = DMPrintCellVector(c, title, Nb*Nc, &x[fieldOffset]);CHKERRQ(ierr); 75173d901b8SMatthew G. Knepley } 7527318780aSToby Isaac for (q = 0; q < Nq; ++q) { 7537318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature point %D", detJ, c, q); 7547318780aSToby Isaac ierr = (*funcs[field])(coordDim, time, &coords[coordDim*q], numFields, funcVal, ctx); 755e735a8a9SMatthew G. Knepley if (ierr) { 756e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 757e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 758e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 7597318780aSToby Isaac ierr2 = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr2); 760e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 761e735a8a9SMatthew G. Knepley } 76215496722SMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 76315496722SMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 76415496722SMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 76515496722SMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 7667318780aSToby Isaac if (debug) {ierr = PetscPrintf(PETSC_COMM_SELF, " elem %d field %d point %g %g %g diff %g\n", c, field, coordDim > 0 ? coords[0] : 0., coordDim > 1 ? coords[1] : 0., coordDim > 2 ? coords[2] : 0., PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]);CHKERRQ(ierr);} 7677318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 76873d901b8SMatthew G. Knepley } 76973d901b8SMatthew G. Knepley } 77015496722SMatthew G. Knepley fieldOffset += Nb*Nc; 77173d901b8SMatthew G. Knepley localDiff[field] += elemDiff; 77273d901b8SMatthew G. Knepley } 77373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 77473d901b8SMatthew G. Knepley } 77573d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 776b2566f29SBarry Smith ierr = MPIU_Allreduce(localDiff, diff, numFields, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)dm));CHKERRQ(ierr); 77773d901b8SMatthew G. Knepley for (field = 0; field < numFields; ++field) diff[field] = PetscSqrtReal(diff[field]); 7787318780aSToby Isaac ierr = PetscFree6(localDiff,funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 77973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 78073d901b8SMatthew G. Knepley } 78173d901b8SMatthew G. Knepley 782e729f68cSMatthew G. Knepley /*@C 783e729f68cSMatthew G. Knepley DMPlexComputeL2DiffVec - This function computes the cellwise L_2 difference between a function u and an FEM interpolant solution u_h, and stores it in a Vec. 784e729f68cSMatthew G. Knepley 785e729f68cSMatthew G. Knepley Input Parameters: 786e729f68cSMatthew G. Knepley + dm - The DM 7870163fd50SMatthew G. Knepley . time - The time 788ca3eba1bSToby Isaac . funcs - The functions to evaluate for each field component: NULL means that component does not contribute to error calculation 789e729f68cSMatthew G. Knepley . ctxs - Optional array of contexts to pass to each function, or NULL. 790e729f68cSMatthew G. Knepley - X - The coefficient vector u_h 791e729f68cSMatthew G. Knepley 792e729f68cSMatthew G. Knepley Output Parameter: 793e729f68cSMatthew G. Knepley . D - A Vec which holds the difference ||u - u_h||_2 for each cell 794e729f68cSMatthew G. Knepley 795e729f68cSMatthew G. Knepley Level: developer 796e729f68cSMatthew G. Knepley 797b698f381SToby Isaac .seealso: DMProjectFunction(), DMComputeL2Diff(), DMPlexComputeL2FieldDiff(), DMComputeL2GradientDiff() 798e729f68cSMatthew G. Knepley @*/ 7990163fd50SMatthew G. Knepley PetscErrorCode DMPlexComputeL2DiffVec(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, Vec D) 800e729f68cSMatthew G. Knepley { 801e729f68cSMatthew G. Knepley PetscSection section; 802e729f68cSMatthew G. Knepley PetscQuadrature quad; 803e729f68cSMatthew G. Knepley Vec localX; 804e729f68cSMatthew G. Knepley PetscScalar *funcVal, *interpolant; 8057318780aSToby Isaac PetscReal *coords, *detJ, *J; 806e729f68cSMatthew G. Knepley const PetscReal *quadPoints, *quadWeights; 8077318780aSToby Isaac PetscInt dim, coordDim, numFields, numComponents = 0, Nq, cStart, cEnd, cEndInterior, c, field, fieldOffset; 808e729f68cSMatthew G. Knepley PetscErrorCode ierr; 809e729f68cSMatthew G. Knepley 810e729f68cSMatthew G. Knepley PetscFunctionBegin; 811e729f68cSMatthew G. Knepley ierr = VecSet(D, 0.0);CHKERRQ(ierr); 812e729f68cSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 8137318780aSToby Isaac ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 814e729f68cSMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 815e729f68cSMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &numFields);CHKERRQ(ierr); 816e729f68cSMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 817bdd6f66aSToby Isaac ierr = DMProjectFunctionLocal(dm, time, funcs, ctxs, INSERT_BC_VALUES, localX);CHKERRQ(ierr); 818e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 819e729f68cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 820e729f68cSMatthew G. Knepley for (field = 0; field < numFields; ++field) { 821e729f68cSMatthew G. Knepley PetscObject obj; 822e729f68cSMatthew G. Knepley PetscClassId id; 823e729f68cSMatthew G. Knepley PetscInt Nc; 824e729f68cSMatthew G. Knepley 825e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 826e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 827e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 828e729f68cSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 829e729f68cSMatthew G. Knepley 830e729f68cSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &quad);CHKERRQ(ierr); 831e729f68cSMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 832e729f68cSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 833e729f68cSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 834e729f68cSMatthew G. Knepley 835e729f68cSMatthew G. Knepley ierr = PetscFVGetQuadrature(fv, &quad);CHKERRQ(ierr); 836e729f68cSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 837e729f68cSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 838e729f68cSMatthew G. Knepley numComponents += Nc; 839e729f68cSMatthew G. Knepley } 8407318780aSToby Isaac ierr = PetscQuadratureGetData(quad, NULL, &Nq, &quadPoints, &quadWeights);CHKERRQ(ierr); 8417318780aSToby Isaac ierr = PetscMalloc5(numComponents,&funcVal,numComponents,&interpolant,coordDim*Nq,&coords,Nq,&detJ,coordDim*coordDim*Nq,&J);CHKERRQ(ierr); 842e729f68cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 843e729f68cSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 844e729f68cSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 845e729f68cSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 846e729f68cSMatthew G. Knepley PetscScalar *x = NULL; 8476f288a59SMatthew G. Knepley PetscScalar elemDiff = 0.0; 848e729f68cSMatthew G. Knepley 8497318780aSToby Isaac ierr = DMPlexComputeCellGeometryFEM(dm, c, quad, coords, J, NULL, detJ);CHKERRQ(ierr); 850e729f68cSMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 851e729f68cSMatthew G. Knepley 852e729f68cSMatthew G. Knepley for (field = 0, fieldOffset = 0; field < numFields; ++field) { 853e729f68cSMatthew G. Knepley PetscObject obj; 854e729f68cSMatthew G. Knepley PetscClassId id; 855e729f68cSMatthew G. Knepley void * const ctx = ctxs ? ctxs[field] : NULL; 856e729f68cSMatthew G. Knepley PetscInt Nb, Nc, q, fc; 857e729f68cSMatthew G. Knepley 858e729f68cSMatthew G. Knepley ierr = DMGetField(dm, field, &obj);CHKERRQ(ierr); 859e729f68cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 860e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEGetNumComponents((PetscFE) obj, &Nc);CHKERRQ(ierr);ierr = PetscFEGetDimension((PetscFE) obj, &Nb);CHKERRQ(ierr);} 861e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVGetNumComponents((PetscFV) obj, &Nc);CHKERRQ(ierr);Nb = 1;} 862e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 86323f34ed2SToby Isaac if (funcs[field]) { 8647318780aSToby Isaac for (q = 0; q < Nq; ++q) { 8657318780aSToby Isaac if (detJ[q] <= 0.0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %D, quadrature points %D", detJ[q], c, q); 8667318780aSToby Isaac ierr = (*funcs[field])(dim, time, &coords[q*coordDim], Nc, funcVal, ctx); 867e735a8a9SMatthew G. Knepley if (ierr) { 868e735a8a9SMatthew G. Knepley PetscErrorCode ierr2; 869e735a8a9SMatthew G. Knepley ierr2 = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr2); 8707318780aSToby Isaac ierr2 = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 871e735a8a9SMatthew G. Knepley ierr2 = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr2); 872e735a8a9SMatthew G. Knepley CHKERRQ(ierr); 873e735a8a9SMatthew G. Knepley } 874e729f68cSMatthew G. Knepley if (id == PETSCFE_CLASSID) {ierr = PetscFEInterpolate_Static((PetscFE) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 875e729f68cSMatthew G. Knepley else if (id == PETSCFV_CLASSID) {ierr = PetscFVInterpolate_Static((PetscFV) obj, &x[fieldOffset], q, interpolant);CHKERRQ(ierr);} 876e729f68cSMatthew G. Knepley else SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", field); 877e729f68cSMatthew G. Knepley for (fc = 0; fc < Nc; ++fc) { 8787318780aSToby Isaac elemDiff += PetscSqr(PetscRealPart(interpolant[fc] - funcVal[fc]))*quadWeights[q]*detJ[q]; 879e729f68cSMatthew G. Knepley } 880e729f68cSMatthew G. Knepley } 88123f34ed2SToby Isaac } 882e729f68cSMatthew G. Knepley fieldOffset += Nb*Nc; 883e729f68cSMatthew G. Knepley } 884e729f68cSMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, NULL, localX, c, NULL, &x);CHKERRQ(ierr); 88523f34ed2SToby Isaac ierr = VecSetValue(D, c - cStart, elemDiff, INSERT_VALUES);CHKERRQ(ierr); 886e729f68cSMatthew G. Knepley } 8877318780aSToby Isaac ierr = PetscFree5(funcVal,interpolant,coords,detJ,J);CHKERRQ(ierr); 888e729f68cSMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 889e729f68cSMatthew G. Knepley ierr = VecSqrtAbs(D);CHKERRQ(ierr); 890e729f68cSMatthew G. Knepley PetscFunctionReturn(0); 891e729f68cSMatthew G. Knepley } 892e729f68cSMatthew G. Knepley 89373d901b8SMatthew G. Knepley /*@ 89473d901b8SMatthew G. Knepley DMPlexComputeIntegralFEM - Form the local integral F from the local input X using pointwise functions specified by the user 89573d901b8SMatthew G. Knepley 89673d901b8SMatthew G. Knepley Input Parameters: 89773d901b8SMatthew G. Knepley + dm - The mesh 89873d901b8SMatthew G. Knepley . X - Local input vector 89973d901b8SMatthew G. Knepley - user - The user context 90073d901b8SMatthew G. Knepley 90173d901b8SMatthew G. Knepley Output Parameter: 90273d901b8SMatthew G. Knepley . integral - Local integral for each field 90373d901b8SMatthew G. Knepley 90473d901b8SMatthew G. Knepley Level: developer 90573d901b8SMatthew G. Knepley 90673d901b8SMatthew G. Knepley .seealso: DMPlexComputeResidualFEM() 90773d901b8SMatthew G. Knepley @*/ 9080f2d7e86SMatthew G. Knepley PetscErrorCode DMPlexComputeIntegralFEM(DM dm, Vec X, PetscReal *integral, void *user) 90973d901b8SMatthew G. Knepley { 91073d901b8SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 911b5a3613cSMatthew G. Knepley DM dmAux, dmGrad; 912425f1808SMatthew G. Knepley Vec localX, A, cellGeometryFVM = NULL, faceGeometryFVM = NULL, locGrad = NULL; 9132764a2aaSMatthew G. Knepley PetscDS prob, probAux = NULL; 91473d901b8SMatthew G. Knepley PetscSection section, sectionAux; 915b5a3613cSMatthew G. Knepley PetscFV fvm = NULL; 916b5a3613cSMatthew G. Knepley PetscFECellGeom *cgeomFEM; 917b5a3613cSMatthew G. Knepley PetscFVFaceGeom *fgeomFVM; 918b5a3613cSMatthew G. Knepley PetscFVCellGeom *cgeomFVM; 91973d901b8SMatthew G. Knepley PetscScalar *u, *a = NULL; 920b5a3613cSMatthew G. Knepley const PetscScalar *lgrad; 921b5a3613cSMatthew G. Knepley PetscReal *lintegral; 922b5a3613cSMatthew G. Knepley PetscInt *uOff, *uOff_x, *aOff = NULL; 923b5a3613cSMatthew G. Knepley PetscInt dim, Nf, NfAux = 0, f, numCells, cStart, cEnd, cEndInterior, c; 9240f2d7e86SMatthew G. Knepley PetscInt totDim, totDimAux; 925425f1808SMatthew G. Knepley PetscBool useFVM = PETSC_FALSE; 92673d901b8SMatthew G. Knepley PetscErrorCode ierr; 92773d901b8SMatthew G. Knepley 92873d901b8SMatthew G. Knepley PetscFunctionBegin; 929c1f031eeSMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 93073d901b8SMatthew G. Knepley ierr = DMGetLocalVector(dm, &localX);CHKERRQ(ierr); 931bdd6f66aSToby Isaac ierr = DMPlexInsertBoundaryValues(dm, PETSC_TRUE, localX, 0.0, NULL, NULL, NULL);CHKERRQ(ierr); 93273d901b8SMatthew G. Knepley ierr = DMGlobalToLocalBegin(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 93373d901b8SMatthew G. Knepley ierr = DMGlobalToLocalEnd(dm, X, INSERT_VALUES, localX);CHKERRQ(ierr); 934c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 93573d901b8SMatthew G. Knepley ierr = DMGetDefaultSection(dm, §ion);CHKERRQ(ierr); 9362764a2aaSMatthew G. Knepley ierr = DMGetDS(dm, &prob);CHKERRQ(ierr); 9372764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 938b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(prob, &uOff);CHKERRQ(ierr); 939b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentDerivativeOffsets(prob, &uOff_x);CHKERRQ(ierr); 94073d901b8SMatthew G. Knepley ierr = PetscSectionGetNumFields(section, &Nf);CHKERRQ(ierr); 94173d901b8SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 9429ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dm, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 9439ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 94473d901b8SMatthew G. Knepley numCells = cEnd - cStart; 94573d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "dmAux", (PetscObject *) &dmAux);CHKERRQ(ierr); 94673d901b8SMatthew G. Knepley ierr = PetscObjectQuery((PetscObject) dm, "A", (PetscObject *) &A);CHKERRQ(ierr); 94773d901b8SMatthew G. Knepley if (dmAux) { 9482764a2aaSMatthew G. Knepley ierr = DMGetDS(dmAux, &probAux);CHKERRQ(ierr); 949b5a3613cSMatthew G. Knepley ierr = PetscDSGetNumFields(probAux, &NfAux);CHKERRQ(ierr); 950b5a3613cSMatthew G. Knepley ierr = DMGetDefaultSection(dmAux, §ionAux);CHKERRQ(ierr); 9512764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(probAux, &totDimAux);CHKERRQ(ierr); 952b5a3613cSMatthew G. Knepley ierr = PetscDSGetComponentOffsets(probAux, &aOff);CHKERRQ(ierr); 953b5a3613cSMatthew G. Knepley ierr = PetscDSGetEvaluationArrays(probAux, &a, NULL, NULL);CHKERRQ(ierr); 95473d901b8SMatthew G. Knepley } 955b5a3613cSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 956b5a3613cSMatthew G. Knepley PetscObject obj; 957b5a3613cSMatthew G. Knepley PetscClassId id; 958b5a3613cSMatthew G. Knepley 959b5a3613cSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 960b5a3613cSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 961b5a3613cSMatthew G. Knepley if (id == PETSCFV_CLASSID) {useFVM = PETSC_TRUE; fvm = (PetscFV) obj;} 962b5a3613cSMatthew G. Knepley } 963b5a3613cSMatthew G. Knepley if (useFVM) { 964b5a3613cSMatthew G. Knepley Vec grad; 965b5a3613cSMatthew G. Knepley PetscInt fStart, fEnd; 966b5a3613cSMatthew G. Knepley PetscBool compGrad; 967b5a3613cSMatthew G. Knepley 968b5a3613cSMatthew G. Knepley ierr = PetscFVGetComputeGradients(fvm, &compGrad);CHKERRQ(ierr); 969b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, PETSC_TRUE);CHKERRQ(ierr); 970b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGeometryFVM(dm, &cellGeometryFVM, &faceGeometryFVM);CHKERRQ(ierr); 971b5a3613cSMatthew G. Knepley ierr = DMPlexComputeGradientFVM(dm, fvm, faceGeometryFVM, cellGeometryFVM, &dmGrad);CHKERRQ(ierr); 972b5a3613cSMatthew G. Knepley ierr = PetscFVSetComputeGradients(fvm, compGrad);CHKERRQ(ierr); 973b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 974b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 975b5a3613cSMatthew G. Knepley /* Reconstruct and limit cell gradients */ 976b5a3613cSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 977b5a3613cSMatthew G. Knepley ierr = DMGetGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 978b5a3613cSMatthew G. Knepley ierr = DMPlexReconstructGradients_Internal(dm, fvm, fStart, fEnd, faceGeometryFVM, cellGeometryFVM, localX, grad);CHKERRQ(ierr); 979b5a3613cSMatthew G. Knepley /* Communicate gradient values */ 980b5a3613cSMatthew G. Knepley ierr = DMGetLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 981b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalBegin(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 982b5a3613cSMatthew G. Knepley ierr = DMGlobalToLocalEnd(dmGrad, grad, INSERT_VALUES, locGrad);CHKERRQ(ierr); 983b5a3613cSMatthew G. Knepley ierr = DMRestoreGlobalVector(dmGrad, &grad);CHKERRQ(ierr); 984b5a3613cSMatthew G. Knepley /* Handle non-essential (e.g. outflow) boundary values */ 985b5a3613cSMatthew G. Knepley ierr = DMPlexInsertBoundaryValues(dm, PETSC_FALSE, localX, 0.0, faceGeometryFVM, cellGeometryFVM, locGrad);CHKERRQ(ierr); 986b5a3613cSMatthew G. Knepley ierr = VecGetArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 987b5a3613cSMatthew G. Knepley } 988b5a3613cSMatthew G. Knepley ierr = PetscMalloc3(Nf,&lintegral,numCells*totDim,&u,numCells,&cgeomFEM);CHKERRQ(ierr); 9890f2d7e86SMatthew G. Knepley if (dmAux) {ierr = PetscMalloc1(numCells*totDimAux, &a);CHKERRQ(ierr);} 990c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {lintegral[f] = 0.0;} 99173d901b8SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 99273d901b8SMatthew G. Knepley PetscScalar *x = NULL; 99373d901b8SMatthew G. Knepley PetscInt i; 99473d901b8SMatthew G. Knepley 995b5a3613cSMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dm, c, NULL, cgeomFEM[c].v0, cgeomFEM[c].J, cgeomFEM[c].invJ, &cgeomFEM[c].detJ);CHKERRQ(ierr); 996b5a3613cSMatthew G. Knepley if (cgeomFEM[c].detJ <= 0.0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %d", cgeomFEM[c].detJ, c); 99773d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 9980f2d7e86SMatthew G. Knepley for (i = 0; i < totDim; ++i) u[c*totDim+i] = x[i]; 99973d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dm, section, localX, c, NULL, &x);CHKERRQ(ierr); 100073d901b8SMatthew G. Knepley if (dmAux) { 100173d901b8SMatthew G. Knepley ierr = DMPlexVecGetClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 10020f2d7e86SMatthew G. Knepley for (i = 0; i < totDimAux; ++i) a[c*totDimAux+i] = x[i]; 100373d901b8SMatthew G. Knepley ierr = DMPlexVecRestoreClosure(dmAux, sectionAux, A, c, NULL, &x);CHKERRQ(ierr); 100473d901b8SMatthew G. Knepley } 100573d901b8SMatthew G. Knepley } 100673d901b8SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 1007c1f031eeSMatthew G. Knepley PetscObject obj; 1008c1f031eeSMatthew G. Knepley PetscClassId id; 1009c1f031eeSMatthew G. Knepley PetscInt numChunks, numBatches, batchSize, numBlocks, blockSize, Ne, Nr, offset; 101073d901b8SMatthew G. Knepley 1011c1f031eeSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 1012c1f031eeSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 1013c1f031eeSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 1014c1f031eeSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1015c1f031eeSMatthew G. Knepley PetscQuadrature q; 1016c1f031eeSMatthew G. Knepley PetscInt Nq, Nb; 1017c1f031eeSMatthew G. Knepley 10180f2d7e86SMatthew G. Knepley ierr = PetscFEGetTileSizes(fe, NULL, &numBlocks, NULL, &numBatches);CHKERRQ(ierr); 1019c1f031eeSMatthew G. Knepley ierr = PetscFEGetQuadrature(fe, &q);CHKERRQ(ierr); 1020c1f031eeSMatthew G. Knepley ierr = PetscQuadratureGetData(q, NULL, &Nq, NULL, NULL);CHKERRQ(ierr); 1021c1f031eeSMatthew G. Knepley ierr = PetscFEGetDimension(fe, &Nb);CHKERRQ(ierr); 1022c1f031eeSMatthew G. Knepley blockSize = Nb*Nq; 102373d901b8SMatthew G. Knepley batchSize = numBlocks * blockSize; 10240f2d7e86SMatthew G. Knepley ierr = PetscFESetTileSizes(fe, blockSize, numBlocks, batchSize, numBatches);CHKERRQ(ierr); 102573d901b8SMatthew G. Knepley numChunks = numCells / (numBatches*batchSize); 102673d901b8SMatthew G. Knepley Ne = numChunks*numBatches*batchSize; 102773d901b8SMatthew G. Knepley Nr = numCells % (numBatches*batchSize); 102873d901b8SMatthew G. Knepley offset = numCells - Nr; 1029b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Ne, cgeomFEM, u, probAux, a, lintegral);CHKERRQ(ierr); 1030b5a3613cSMatthew G. Knepley ierr = PetscFEIntegrate(fe, prob, f, Nr, &cgeomFEM[offset], &u[offset*totDim], probAux, &a[offset*totDimAux], lintegral);CHKERRQ(ierr); 1031c1f031eeSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 1032b69edc29SMatthew G. Knepley /* PetscFV fv = (PetscFV) obj; */ 1033c1f031eeSMatthew G. Knepley PetscInt foff; 1034420e96edSMatthew G. Knepley PetscPointFunc obj_func; 1035b69edc29SMatthew G. Knepley PetscScalar lint; 1036c1f031eeSMatthew G. Knepley 1037c1f031eeSMatthew G. Knepley ierr = PetscDSGetObjective(prob, f, &obj_func);CHKERRQ(ierr); 1038c1f031eeSMatthew G. Knepley ierr = PetscDSGetFieldOffset(prob, f, &foff);CHKERRQ(ierr); 1039c1f031eeSMatthew G. Knepley if (obj_func) { 1040c1f031eeSMatthew G. Knepley for (c = 0; c < numCells; ++c) { 1041b5a3613cSMatthew G. Knepley PetscScalar *u_x; 1042b5a3613cSMatthew G. Knepley 1043b5a3613cSMatthew G. Knepley ierr = DMPlexPointLocalRead(dmGrad, c, lgrad, &u_x);CHKERRQ(ierr); 1044b5a3613cSMatthew G. Knepley obj_func(dim, Nf, NfAux, uOff, uOff_x, &u[totDim*c+foff], NULL, u_x, aOff, NULL, a, NULL, NULL, 0.0, cgeomFVM[c].centroid, &lint); 1045b5a3613cSMatthew G. Knepley lintegral[f] += PetscRealPart(lint)*cgeomFVM[c].volume; 104673d901b8SMatthew G. Knepley } 1047c1f031eeSMatthew G. Knepley } 1048c1f031eeSMatthew G. Knepley } else SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %d", f); 1049c1f031eeSMatthew G. Knepley } 1050b5a3613cSMatthew G. Knepley if (useFVM) { 1051b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(locGrad, &lgrad);CHKERRQ(ierr); 1052b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(faceGeometryFVM, (const PetscScalar **) &fgeomFVM);CHKERRQ(ierr); 1053b5a3613cSMatthew G. Knepley ierr = VecRestoreArrayRead(cellGeometryFVM, (const PetscScalar **) &cgeomFVM);CHKERRQ(ierr); 1054b5a3613cSMatthew G. Knepley ierr = DMRestoreLocalVector(dmGrad, &locGrad);CHKERRQ(ierr); 1055b5a3613cSMatthew G. Knepley ierr = VecDestroy(&faceGeometryFVM);CHKERRQ(ierr); 1056b5a3613cSMatthew G. Knepley ierr = VecDestroy(&cellGeometryFVM);CHKERRQ(ierr); 1057b5a3613cSMatthew G. Knepley ierr = DMDestroy(&dmGrad);CHKERRQ(ierr); 1058b5a3613cSMatthew G. Knepley } 105973d901b8SMatthew G. Knepley if (dmAux) {ierr = PetscFree(a);CHKERRQ(ierr);} 106073d901b8SMatthew G. Knepley if (mesh->printFEM) { 106173d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "Local integral:");CHKERRQ(ierr); 1062c1f031eeSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), " %g", lintegral[f]);CHKERRQ(ierr);} 106373d901b8SMatthew G. Knepley ierr = PetscPrintf(PetscObjectComm((PetscObject) dm), "\n");CHKERRQ(ierr); 106473d901b8SMatthew G. Knepley } 106573d901b8SMatthew G. Knepley ierr = DMRestoreLocalVector(dm, &localX);CHKERRQ(ierr); 1066b2566f29SBarry Smith ierr = MPIU_Allreduce(lintegral, integral, Nf, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject) dm));CHKERRQ(ierr); 1067b5a3613cSMatthew G. Knepley ierr = PetscFree3(lintegral,u,cgeomFEM);CHKERRQ(ierr); 1068c1f031eeSMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_IntegralFEM,dm,0,0,0);CHKERRQ(ierr); 106973d901b8SMatthew G. Knepley PetscFunctionReturn(0); 107073d901b8SMatthew G. Knepley } 107173d901b8SMatthew G. Knepley 1072d69c5d34SMatthew G. Knepley /*@ 107368132eb9SMatthew G. Knepley DMPlexComputeInterpolatorNested - Form the local portion of the interpolation matrix I from the coarse DM to the uniformly refined DM. 1074d69c5d34SMatthew G. Knepley 1075d69c5d34SMatthew G. Knepley Input Parameters: 1076d69c5d34SMatthew G. Knepley + dmf - The fine mesh 1077d69c5d34SMatthew G. Knepley . dmc - The coarse mesh 1078d69c5d34SMatthew G. Knepley - user - The user context 1079d69c5d34SMatthew G. Knepley 1080d69c5d34SMatthew G. Knepley Output Parameter: 1081934789fcSMatthew G. Knepley . In - The interpolation matrix 1082d69c5d34SMatthew G. Knepley 1083d69c5d34SMatthew G. Knepley Level: developer 1084d69c5d34SMatthew G. Knepley 108568132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorGeneral(), DMPlexComputeJacobianFEM() 1086d69c5d34SMatthew G. Knepley @*/ 108768132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorNested(DM dmc, DM dmf, Mat In, void *user) 1088d69c5d34SMatthew G. Knepley { 1089d69c5d34SMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmc->data; 1090d69c5d34SMatthew G. Knepley const char *name = "Interpolator"; 10912764a2aaSMatthew G. Knepley PetscDS prob; 1092d69c5d34SMatthew G. Knepley PetscFE *feRef; 109397c42addSMatthew G. Knepley PetscFV *fvRef; 1094d69c5d34SMatthew G. Knepley PetscSection fsection, fglobalSection; 1095d69c5d34SMatthew G. Knepley PetscSection csection, cglobalSection; 1096d69c5d34SMatthew G. Knepley PetscScalar *elemMat; 10979ac3fadcSMatthew G. Knepley PetscInt dim, Nf, f, fieldI, fieldJ, offsetI, offsetJ, cStart, cEnd, cEndInterior, c; 10980f2d7e86SMatthew G. Knepley PetscInt cTotDim, rTotDim = 0; 1099d69c5d34SMatthew G. Knepley PetscErrorCode ierr; 1100d69c5d34SMatthew G. Knepley 1101d69c5d34SMatthew G. Knepley PetscFunctionBegin; 1102d69c5d34SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1103c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 1104d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 1105d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 1106d69c5d34SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 1107d69c5d34SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 1108d69c5d34SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 1109d69c5d34SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 11109ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 11119ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 11122764a2aaSMatthew G. Knepley ierr = DMGetDS(dmf, &prob);CHKERRQ(ierr); 111397c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 1114d69c5d34SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 111597c42addSMatthew G. Knepley PetscObject obj; 111697c42addSMatthew G. Knepley PetscClassId id; 1117aa7890ccSMatthew G. Knepley PetscInt rNb = 0, Nc = 0; 1118d69c5d34SMatthew G. Knepley 111997c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 112097c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 112197c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 112297c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 112397c42addSMatthew G. Knepley 11240f2d7e86SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 1125d69c5d34SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &rNb);CHKERRQ(ierr); 11260f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 112797c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 112897c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 112997c42addSMatthew G. Knepley PetscDualSpace Q; 113097c42addSMatthew G. Knepley 113197c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 113297c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 113397c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &rNb);CHKERRQ(ierr); 113497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 113597c42addSMatthew G. Knepley } 11360f2d7e86SMatthew G. Knepley rTotDim += rNb*Nc; 1137d69c5d34SMatthew G. Knepley } 11382764a2aaSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 11390f2d7e86SMatthew G. Knepley ierr = PetscMalloc1(rTotDim*cTotDim,&elemMat);CHKERRQ(ierr); 11400f2d7e86SMatthew G. Knepley ierr = PetscMemzero(elemMat, rTotDim*cTotDim * sizeof(PetscScalar));CHKERRQ(ierr); 1141d69c5d34SMatthew G. Knepley for (fieldI = 0, offsetI = 0; fieldI < Nf; ++fieldI) { 1142d69c5d34SMatthew G. Knepley PetscDualSpace Qref; 1143d69c5d34SMatthew G. Knepley PetscQuadrature f; 1144d69c5d34SMatthew G. Knepley const PetscReal *qpoints, *qweights; 1145d69c5d34SMatthew G. Knepley PetscReal *points; 1146d69c5d34SMatthew G. Knepley PetscInt npoints = 0, Nc, Np, fpdim, i, k, p, d; 1147d69c5d34SMatthew G. Knepley 1148d69c5d34SMatthew G. Knepley /* Compose points from all dual basis functionals */ 114997c42addSMatthew G. Knepley if (feRef[fieldI]) { 1150d69c5d34SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[fieldI], &Qref);CHKERRQ(ierr); 11510f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[fieldI], &Nc);CHKERRQ(ierr); 115297c42addSMatthew G. Knepley } else { 115397c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[fieldI], &Qref);CHKERRQ(ierr); 115497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[fieldI], &Nc);CHKERRQ(ierr); 115597c42addSMatthew G. Knepley } 1156d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Qref, &fpdim);CHKERRQ(ierr); 1157d69c5d34SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 1158d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1159d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, NULL);CHKERRQ(ierr); 1160d69c5d34SMatthew G. Knepley npoints += Np; 1161d69c5d34SMatthew G. Knepley } 1162d69c5d34SMatthew G. Knepley ierr = PetscMalloc1(npoints*dim,&points);CHKERRQ(ierr); 1163d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1164d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1165d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 1166d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) for (d = 0; d < dim; ++d) points[k*dim+d] = qpoints[p*dim+d]; 1167d69c5d34SMatthew G. Knepley } 1168d69c5d34SMatthew G. Knepley 1169d69c5d34SMatthew G. Knepley for (fieldJ = 0, offsetJ = 0; fieldJ < Nf; ++fieldJ) { 117097c42addSMatthew G. Knepley PetscObject obj; 117197c42addSMatthew G. Knepley PetscClassId id; 1172d69c5d34SMatthew G. Knepley PetscReal *B; 1173aa7890ccSMatthew G. Knepley PetscInt NcJ = 0, cpdim = 0, j; 1174d69c5d34SMatthew G. Knepley 117597c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, fieldJ, &obj);CHKERRQ(ierr); 117697c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 117797c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 117897c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 1179d69c5d34SMatthew G. Knepley 1180d69c5d34SMatthew G. Knepley /* Evaluate basis at points */ 11810f2d7e86SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &NcJ);CHKERRQ(ierr); 11820f2d7e86SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 1183ffe73a53SMatthew G. Knepley /* For now, fields only interpolate themselves */ 1184ffe73a53SMatthew G. Knepley if (fieldI == fieldJ) { 11857c927364SMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 11860f2d7e86SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr); 1187d69c5d34SMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 1188d69c5d34SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 1189d69c5d34SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 1190d69c5d34SMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 119136a6d9c0SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 11920f2d7e86SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += B[k*cpdim*NcJ+j*Nc+c]*qweights[p]; 119336a6d9c0SMatthew G. Knepley } 1194d69c5d34SMatthew G. Knepley } 1195d69c5d34SMatthew G. Knepley } 11960f2d7e86SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, npoints, points, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 1197ffe73a53SMatthew G. Knepley } 119897c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 119997c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 120097c42addSMatthew G. Knepley 120197c42addSMatthew G. Knepley /* Evaluate constant function at points */ 120297c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &NcJ);CHKERRQ(ierr); 120397c42addSMatthew G. Knepley cpdim = 1; 120497c42addSMatthew G. Knepley /* For now, fields only interpolate themselves */ 120597c42addSMatthew G. Knepley if (fieldI == fieldJ) { 120697c42addSMatthew G. Knepley if (Nc != NcJ) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", Nc, NcJ); 120797c42addSMatthew G. Knepley for (i = 0, k = 0; i < fpdim; ++i) { 120897c42addSMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Qref, i, &f);CHKERRQ(ierr); 120997c42addSMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, NULL, &qweights);CHKERRQ(ierr); 121097c42addSMatthew G. Knepley for (p = 0; p < Np; ++p, ++k) { 121197c42addSMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 121297c42addSMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(offsetI + i*Nc + c)*cTotDim + offsetJ + j*NcJ + c] += 1.0*qweights[p]; 121397c42addSMatthew G. Knepley } 121497c42addSMatthew G. Knepley } 121597c42addSMatthew G. Knepley } 121697c42addSMatthew G. Knepley } 121797c42addSMatthew G. Knepley } 121836a6d9c0SMatthew G. Knepley offsetJ += cpdim*NcJ; 1219d69c5d34SMatthew G. Knepley } 1220d69c5d34SMatthew G. Knepley offsetI += fpdim*Nc; 1221549a8adaSMatthew G. Knepley ierr = PetscFree(points);CHKERRQ(ierr); 1222d69c5d34SMatthew G. Knepley } 12230f2d7e86SMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(0, name, rTotDim, cTotDim, elemMat);CHKERRQ(ierr);} 12247f5b169aSMatthew G. Knepley /* Preallocate matrix */ 12257f5b169aSMatthew G. Knepley { 1226c094ef40SMatthew G. Knepley Mat preallocator; 1227c094ef40SMatthew G. Knepley PetscScalar *vals; 1228c094ef40SMatthew G. Knepley PetscInt *cellCIndices, *cellFIndices; 1229c094ef40SMatthew G. Knepley PetscInt locRows, locCols, cell; 12307f5b169aSMatthew G. Knepley 1231c094ef40SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, &locCols);CHKERRQ(ierr); 1232c094ef40SMatthew G. Knepley ierr = MatCreate(PetscObjectComm((PetscObject) In), &preallocator);CHKERRQ(ierr); 1233c094ef40SMatthew G. Knepley ierr = MatSetType(preallocator, MATPREALLOCATOR);CHKERRQ(ierr); 1234c094ef40SMatthew G. Knepley ierr = MatSetSizes(preallocator, locRows, locCols, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 1235c094ef40SMatthew G. Knepley ierr = MatSetUp(preallocator);CHKERRQ(ierr); 1236c094ef40SMatthew G. Knepley ierr = PetscCalloc3(rTotDim*cTotDim, &vals,cTotDim,&cellCIndices,rTotDim,&cellFIndices);CHKERRQ(ierr); 12377f5b169aSMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 12387f5b169aSMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, cell, cellCIndices, cellFIndices);CHKERRQ(ierr); 1239c094ef40SMatthew G. Knepley ierr = MatSetValues(preallocator, rTotDim, cellFIndices, cTotDim, cellCIndices, vals, INSERT_VALUES);CHKERRQ(ierr); 12407f5b169aSMatthew G. Knepley } 1241c094ef40SMatthew G. Knepley ierr = PetscFree3(vals,cellCIndices,cellFIndices);CHKERRQ(ierr); 1242c094ef40SMatthew G. Knepley ierr = MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1243c094ef40SMatthew G. Knepley ierr = MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1244c094ef40SMatthew G. Knepley ierr = MatPreallocatorPreallocate(preallocator, PETSC_TRUE, In);CHKERRQ(ierr); 1245c094ef40SMatthew G. Knepley ierr = MatDestroy(&preallocator);CHKERRQ(ierr); 12467f5b169aSMatthew G. Knepley } 12477f5b169aSMatthew G. Knepley /* Fill matrix */ 12487f5b169aSMatthew G. Knepley ierr = MatZeroEntries(In);CHKERRQ(ierr); 1249d69c5d34SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1250934789fcSMatthew G. Knepley ierr = DMPlexMatSetClosureRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, In, c, elemMat, INSERT_VALUES);CHKERRQ(ierr); 1251d69c5d34SMatthew G. Knepley } 1252549a8adaSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);} 125397c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 1254549a8adaSMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 1255934789fcSMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1256934789fcSMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1257d69c5d34SMatthew G. Knepley if (mesh->printFEM) { 1258d69c5d34SMatthew G. Knepley ierr = PetscPrintf(PETSC_COMM_WORLD, "%s:\n", name);CHKERRQ(ierr); 1259934789fcSMatthew G. Knepley ierr = MatChop(In, 1.0e-10);CHKERRQ(ierr); 1260934789fcSMatthew G. Knepley ierr = MatView(In, PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr); 1261d69c5d34SMatthew G. Knepley } 1262d69c5d34SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1263d69c5d34SMatthew G. Knepley PetscFunctionReturn(0); 1264d69c5d34SMatthew G. Knepley } 12656c73c22cSMatthew G. Knepley 126668132eb9SMatthew G. Knepley /*@ 126768132eb9SMatthew G. Knepley DMPlexComputeInterpolatorGeneral - Form the local portion of the interpolation matrix I from the coarse DM to a non-nested fine DM. 126868132eb9SMatthew G. Knepley 126968132eb9SMatthew G. Knepley Input Parameters: 127068132eb9SMatthew G. Knepley + dmf - The fine mesh 127168132eb9SMatthew G. Knepley . dmc - The coarse mesh 127268132eb9SMatthew G. Knepley - user - The user context 127368132eb9SMatthew G. Knepley 127468132eb9SMatthew G. Knepley Output Parameter: 127568132eb9SMatthew G. Knepley . In - The interpolation matrix 127668132eb9SMatthew G. Knepley 127768132eb9SMatthew G. Knepley Level: developer 127868132eb9SMatthew G. Knepley 127968132eb9SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 128068132eb9SMatthew G. Knepley @*/ 128168132eb9SMatthew G. Knepley PetscErrorCode DMPlexComputeInterpolatorGeneral(DM dmc, DM dmf, Mat In, void *user) 12824ef9d792SMatthew G. Knepley { 128364e98e1dSMatthew G. Knepley DM_Plex *mesh = (DM_Plex *) dmf->data; 128464e98e1dSMatthew G. Knepley const char *name = "Interpolator"; 12854ef9d792SMatthew G. Knepley PetscDS prob; 12864ef9d792SMatthew G. Knepley PetscSection fsection, csection, globalFSection, globalCSection; 12874ef9d792SMatthew G. Knepley PetscHashJK ht; 12884ef9d792SMatthew G. Knepley PetscLayout rLayout; 12894ef9d792SMatthew G. Knepley PetscInt *dnz, *onz; 12904ef9d792SMatthew G. Knepley PetscInt locRows, rStart, rEnd; 12914ef9d792SMatthew G. Knepley PetscReal *x, *v0, *J, *invJ, detJ; 12924ef9d792SMatthew G. Knepley PetscReal *v0c, *Jc, *invJc, detJc; 12934ef9d792SMatthew G. Knepley PetscScalar *elemMat; 12944ef9d792SMatthew G. Knepley PetscInt dim, Nf, field, totDim, cStart, cEnd, cell, ccell; 12954ef9d792SMatthew G. Knepley PetscErrorCode ierr; 12964ef9d792SMatthew G. Knepley 12974ef9d792SMatthew G. Knepley PetscFunctionBegin; 129877711781SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 12994ef9d792SMatthew G. Knepley ierr = DMGetCoordinateDim(dmc, &dim);CHKERRQ(ierr); 13004ef9d792SMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 13014ef9d792SMatthew G. Knepley ierr = PetscDSGetRefCoordArrays(prob, &x, NULL);CHKERRQ(ierr); 13024ef9d792SMatthew G. Knepley ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 13034ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0,dim*dim,&J,dim*dim,&invJ);CHKERRQ(ierr); 13044ef9d792SMatthew G. Knepley ierr = PetscMalloc3(dim,&v0c,dim*dim,&Jc,dim*dim,&invJc);CHKERRQ(ierr); 13054ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 13064ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &globalFSection);CHKERRQ(ierr); 13074ef9d792SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 13084ef9d792SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &globalCSection);CHKERRQ(ierr); 13094ef9d792SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmf, 0, &cStart, &cEnd);CHKERRQ(ierr); 13104ef9d792SMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 13114ef9d792SMatthew G. Knepley ierr = PetscMalloc1(totDim*totDim, &elemMat);CHKERRQ(ierr); 13124ef9d792SMatthew G. Knepley 13134ef9d792SMatthew G. Knepley ierr = MatGetLocalSize(In, &locRows, NULL);CHKERRQ(ierr); 13144ef9d792SMatthew G. Knepley ierr = PetscLayoutCreate(PetscObjectComm((PetscObject) In), &rLayout);CHKERRQ(ierr); 13154ef9d792SMatthew G. Knepley ierr = PetscLayoutSetLocalSize(rLayout, locRows);CHKERRQ(ierr); 13164ef9d792SMatthew G. Knepley ierr = PetscLayoutSetBlockSize(rLayout, 1);CHKERRQ(ierr); 13174ef9d792SMatthew G. Knepley ierr = PetscLayoutSetUp(rLayout);CHKERRQ(ierr); 13184ef9d792SMatthew G. Knepley ierr = PetscLayoutGetRange(rLayout, &rStart, &rEnd);CHKERRQ(ierr); 13194ef9d792SMatthew G. Knepley ierr = PetscLayoutDestroy(&rLayout);CHKERRQ(ierr); 13204ef9d792SMatthew G. Knepley ierr = PetscCalloc2(locRows,&dnz,locRows,&onz);CHKERRQ(ierr); 13214ef9d792SMatthew G. Knepley ierr = PetscHashJKCreate(&ht);CHKERRQ(ierr); 13224ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 13234ef9d792SMatthew G. Knepley PetscObject obj; 13244ef9d792SMatthew G. Knepley PetscClassId id; 1325c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 13264ef9d792SMatthew G. Knepley PetscQuadrature f; 132717f047d8SMatthew G. Knepley const PetscReal *qpoints; 132817f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 13294ef9d792SMatthew G. Knepley 13304ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 13314ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 13324ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 13334ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 13344ef9d792SMatthew G. Knepley 13354ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 13364ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 13374ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 13384ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 13394ef9d792SMatthew G. Knepley 13404ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 13414ef9d792SMatthew G. Knepley Nc = 1; 13424ef9d792SMatthew G. Knepley } 13434ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 13444ef9d792SMatthew G. Knepley /* For each fine grid cell */ 13454ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 13464ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 13474ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 13484ef9d792SMatthew G. Knepley 13496ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 13504ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 13514ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 13524ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 13534ef9d792SMatthew G. Knepley Vec pointVec; 13544ef9d792SMatthew G. Knepley PetscScalar *pV; 13553a93e3b7SToby Isaac PetscSF coarseCellSF = NULL; 13563a93e3b7SToby Isaac const PetscSFNode *coarseCells; 13574ef9d792SMatthew G. Knepley PetscInt numCoarseCells, q, r, c; 13584ef9d792SMatthew G. Knepley 13594ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 13604ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 13614ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, NULL);CHKERRQ(ierr); 13624ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 13634ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 13644ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 13654ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 13664ef9d792SMatthew G. Knepley /* Transform point to real space */ 13674ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 13684ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 13694ef9d792SMatthew G. Knepley } 13704ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 13714ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 137262a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 13733a93e3b7SToby Isaac ierr = PetscSFViewFromOptions(coarseCellSF, NULL, "-interp_sf_view");CHKERRQ(ierr); 13744ef9d792SMatthew G. Knepley /* Update preallocation info */ 13753a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 13763a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 13774ef9d792SMatthew G. Knepley for (r = 0; r < Nc; ++r) { 13784ef9d792SMatthew G. Knepley PetscHashJKKey key; 13794ef9d792SMatthew G. Knepley PetscHashJKIter missing, iter; 13804ef9d792SMatthew G. Knepley 13814ef9d792SMatthew G. Knepley key.j = findices[i*Nc+r]; 13824ef9d792SMatthew G. Knepley if (key.j < 0) continue; 13834ef9d792SMatthew G. Knepley /* Get indices for coarse elements */ 13844ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 13853a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 13864ef9d792SMatthew G. Knepley for (c = 0; c < numCIndices; ++c) { 13874ef9d792SMatthew G. Knepley key.k = cindices[c]; 13884ef9d792SMatthew G. Knepley if (key.k < 0) continue; 13894ef9d792SMatthew G. Knepley ierr = PetscHashJKPut(ht, key, &missing, &iter);CHKERRQ(ierr); 13904ef9d792SMatthew G. Knepley if (missing) { 13914ef9d792SMatthew G. Knepley ierr = PetscHashJKSet(ht, iter, 1);CHKERRQ(ierr); 13924ef9d792SMatthew G. Knepley if ((key.k >= rStart) && (key.k < rEnd)) ++dnz[key.j-rStart]; 13934ef9d792SMatthew G. Knepley else ++onz[key.j-rStart]; 13944ef9d792SMatthew G. Knepley } 13954ef9d792SMatthew G. Knepley } 13963a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 13974ef9d792SMatthew G. Knepley } 13984ef9d792SMatthew G. Knepley } 13993a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 14004ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 14014ef9d792SMatthew G. Knepley } 140246bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14034ef9d792SMatthew G. Knepley } 14044ef9d792SMatthew G. Knepley } 14054ef9d792SMatthew G. Knepley ierr = PetscHashJKDestroy(&ht);CHKERRQ(ierr); 14064ef9d792SMatthew G. Knepley ierr = MatXAIJSetPreallocation(In, 1, dnz, onz, NULL, NULL);CHKERRQ(ierr); 14074ef9d792SMatthew G. Knepley ierr = MatSetOption(In, MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 14084ef9d792SMatthew G. Knepley ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); 14094ef9d792SMatthew G. Knepley for (field = 0; field < Nf; ++field) { 14104ef9d792SMatthew G. Knepley PetscObject obj; 14114ef9d792SMatthew G. Knepley PetscClassId id; 1412c0d7054bSMatthew G. Knepley PetscDualSpace Q = NULL; 14134ef9d792SMatthew G. Knepley PetscQuadrature f; 14144ef9d792SMatthew G. Knepley const PetscReal *qpoints, *qweights; 141517f047d8SMatthew G. Knepley PetscInt Nc, Np, fpdim, i, d; 14164ef9d792SMatthew G. Knepley 14174ef9d792SMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, &obj);CHKERRQ(ierr); 14184ef9d792SMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 14194ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 14204ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 14214ef9d792SMatthew G. Knepley 14224ef9d792SMatthew G. Knepley ierr = PetscFEGetDualSpace(fe, &Q);CHKERRQ(ierr); 14234ef9d792SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 14244ef9d792SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 14254ef9d792SMatthew G. Knepley PetscFV fv = (PetscFV) obj; 14264ef9d792SMatthew G. Knepley 14274ef9d792SMatthew G. Knepley ierr = PetscFVGetDualSpace(fv, &Q);CHKERRQ(ierr); 14284ef9d792SMatthew G. Knepley Nc = 1; 14294ef9d792SMatthew G. Knepley } 14304ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fpdim);CHKERRQ(ierr); 14314ef9d792SMatthew G. Knepley /* For each fine grid cell */ 14324ef9d792SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) { 14334ef9d792SMatthew G. Knepley PetscInt *findices, *cindices; 14344ef9d792SMatthew G. Knepley PetscInt numFIndices, numCIndices; 14354ef9d792SMatthew G. Knepley 14366ecaa68aSToby Isaac ierr = DMPlexGetClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 14374ef9d792SMatthew G. Knepley ierr = DMPlexComputeCellGeometryFEM(dmf, cell, NULL, v0, J, invJ, &detJ);CHKERRQ(ierr); 14384ef9d792SMatthew G. Knepley if (numFIndices != fpdim*Nc) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of fine indices %d != %d dual basis vecs", numFIndices, fpdim*Nc); 14394ef9d792SMatthew G. Knepley for (i = 0; i < fpdim; ++i) { 14404ef9d792SMatthew G. Knepley Vec pointVec; 14414ef9d792SMatthew G. Knepley PetscScalar *pV; 144212111d7cSToby Isaac PetscSF coarseCellSF = NULL; 14433a93e3b7SToby Isaac const PetscSFNode *coarseCells; 144417f047d8SMatthew G. Knepley PetscInt numCoarseCells, cpdim, q, c, j; 14454ef9d792SMatthew G. Knepley 14464ef9d792SMatthew G. Knepley /* Get points from the dual basis functional quadrature */ 14474ef9d792SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(Q, i, &f);CHKERRQ(ierr); 14484ef9d792SMatthew G. Knepley ierr = PetscQuadratureGetData(f, NULL, &Np, &qpoints, &qweights);CHKERRQ(ierr); 14494ef9d792SMatthew G. Knepley ierr = VecCreateSeq(PETSC_COMM_SELF, Np*dim, &pointVec);CHKERRQ(ierr); 14504ef9d792SMatthew G. Knepley ierr = VecSetBlockSize(pointVec, dim);CHKERRQ(ierr); 14514ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 14524ef9d792SMatthew G. Knepley for (q = 0; q < Np; ++q) { 14534ef9d792SMatthew G. Knepley /* Transform point to real space */ 14544ef9d792SMatthew G. Knepley CoordinatesRefToReal(dim, dim, v0, J, &qpoints[q*dim], x); 14554ef9d792SMatthew G. Knepley for (d = 0; d < dim; ++d) pV[q*dim+d] = x[d]; 14564ef9d792SMatthew G. Knepley } 14574ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 14584ef9d792SMatthew G. Knepley /* Get set of coarse cells that overlap points (would like to group points by coarse cell) */ 145962a38674SMatthew G. Knepley ierr = DMLocatePoints(dmc, pointVec, DM_POINTLOCATION_NEAREST, &coarseCellSF);CHKERRQ(ierr); 14604ef9d792SMatthew G. Knepley /* Update preallocation info */ 14613a93e3b7SToby Isaac ierr = PetscSFGetGraph(coarseCellSF, NULL, &numCoarseCells, NULL, &coarseCells);CHKERRQ(ierr); 14623a93e3b7SToby Isaac if (numCoarseCells != Np) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Not all closure points located"); 14634ef9d792SMatthew G. Knepley ierr = VecGetArray(pointVec, &pV);CHKERRQ(ierr); 14644ef9d792SMatthew G. Knepley for (ccell = 0; ccell < numCoarseCells; ++ccell) { 1465826eb36dSMatthew G. Knepley PetscReal pVReal[3]; 1466826eb36dSMatthew G. Knepley 14673a93e3b7SToby Isaac ierr = DMPlexGetClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14684ef9d792SMatthew G. Knepley /* Transform points from real space to coarse reference space */ 14693a93e3b7SToby Isaac ierr = DMPlexComputeCellGeometryFEM(dmc, coarseCells[ccell].index, NULL, v0c, Jc, invJc, &detJc);CHKERRQ(ierr); 1470e2d86523SMatthew G. Knepley for (d = 0; d < dim; ++d) pVReal[d] = PetscRealPart(pV[ccell*dim+d]); 1471826eb36dSMatthew G. Knepley CoordinatesRealToRef(dim, dim, v0c, invJc, pVReal, x); 14724ef9d792SMatthew G. Knepley 14734ef9d792SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 14744ef9d792SMatthew G. Knepley PetscFE fe = (PetscFE) obj; 14754ef9d792SMatthew G. Knepley PetscReal *B; 14764ef9d792SMatthew G. Knepley 14774ef9d792SMatthew G. Knepley /* Evaluate coarse basis on contained point */ 14784ef9d792SMatthew G. Knepley ierr = PetscFEGetDimension(fe, &cpdim);CHKERRQ(ierr); 14794ef9d792SMatthew G. Knepley ierr = PetscFEGetTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr); 1480bdeb5f8fSMatthew G. Knepley ierr = PetscMemzero(elemMat, cpdim*Nc*Nc * sizeof(PetscScalar));CHKERRQ(ierr); 14814ef9d792SMatthew G. Knepley /* Get elemMat entries by multiplying by weight */ 14824ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 14834ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = B[j*Nc + c]*qweights[ccell]; 14844ef9d792SMatthew G. Knepley } 14854ef9d792SMatthew G. Knepley ierr = PetscFERestoreTabulation(fe, 1, x, &B, NULL, NULL);CHKERRQ(ierr);CHKERRQ(ierr); 14864ef9d792SMatthew G. Knepley } else { 14874ef9d792SMatthew G. Knepley cpdim = 1; 14884ef9d792SMatthew G. Knepley for (j = 0; j < cpdim; ++j) { 14894ef9d792SMatthew G. Knepley for (c = 0; c < Nc; ++c) elemMat[(c*cpdim + j)*Nc + c] = 1.0*qweights[ccell]; 14904ef9d792SMatthew G. Knepley } 14914ef9d792SMatthew G. Knepley } 14924ef9d792SMatthew G. Knepley /* Update interpolator */ 149364e98e1dSMatthew G. Knepley if (mesh->printFEM > 1) {ierr = DMPrintCellMatrix(cell, name, Nc, numCIndices, elemMat);CHKERRQ(ierr);} 1494bdeb5f8fSMatthew G. Knepley if (numCIndices != cpdim*Nc) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of element matrix columns %D != %D*%D", numCIndices, cpdim, Nc); 14954ef9d792SMatthew G. Knepley ierr = MatSetValues(In, Nc, &findices[i*Nc], numCIndices, cindices, elemMat, INSERT_VALUES);CHKERRQ(ierr); 14963a93e3b7SToby Isaac ierr = DMPlexRestoreClosureIndices(dmc, csection, globalCSection, coarseCells[ccell].index, &numCIndices, &cindices, NULL);CHKERRQ(ierr); 14974ef9d792SMatthew G. Knepley } 14984ef9d792SMatthew G. Knepley ierr = VecRestoreArray(pointVec, &pV);CHKERRQ(ierr); 14993a93e3b7SToby Isaac ierr = PetscSFDestroy(&coarseCellSF);CHKERRQ(ierr); 15004ef9d792SMatthew G. Knepley ierr = VecDestroy(&pointVec);CHKERRQ(ierr); 15014ef9d792SMatthew G. Knepley } 150246bdb399SToby Isaac ierr = DMPlexRestoreClosureIndices(dmf, fsection, globalFSection, cell, &numFIndices, &findices, NULL);CHKERRQ(ierr); 15034ef9d792SMatthew G. Knepley } 15044ef9d792SMatthew G. Knepley } 15054ef9d792SMatthew G. Knepley ierr = PetscFree3(v0,J,invJ);CHKERRQ(ierr); 15064ef9d792SMatthew G. Knepley ierr = PetscFree3(v0c,Jc,invJc);CHKERRQ(ierr); 15074ef9d792SMatthew G. Knepley ierr = PetscFree(elemMat);CHKERRQ(ierr); 15084ef9d792SMatthew G. Knepley ierr = MatAssemblyBegin(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15094ef9d792SMatthew G. Knepley ierr = MatAssemblyEnd(In, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 151077711781SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolatorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 15114ef9d792SMatthew G. Knepley PetscFunctionReturn(0); 15124ef9d792SMatthew G. Knepley } 15134ef9d792SMatthew G. Knepley 151446fa42a0SMatthew G. Knepley /*@ 151546fa42a0SMatthew G. Knepley DMPlexComputeInjectorFEM - Compute a mapping from coarse unknowns to fine unknowns 151646fa42a0SMatthew G. Knepley 151746fa42a0SMatthew G. Knepley Input Parameters: 151846fa42a0SMatthew G. Knepley + dmc - The coarse mesh 151946fa42a0SMatthew G. Knepley - dmf - The fine mesh 152046fa42a0SMatthew G. Knepley - user - The user context 152146fa42a0SMatthew G. Knepley 152246fa42a0SMatthew G. Knepley Output Parameter: 152346fa42a0SMatthew G. Knepley . sc - The mapping 152446fa42a0SMatthew G. Knepley 152546fa42a0SMatthew G. Knepley Level: developer 152646fa42a0SMatthew G. Knepley 152746fa42a0SMatthew G. Knepley .seealso: DMPlexComputeInterpolatorNested(), DMPlexComputeJacobianFEM() 152846fa42a0SMatthew G. Knepley @*/ 15297c927364SMatthew G. Knepley PetscErrorCode DMPlexComputeInjectorFEM(DM dmc, DM dmf, VecScatter *sc, void *user) 15307c927364SMatthew G. Knepley { 1531e9d4ef1bSMatthew G. Knepley PetscDS prob; 15327c927364SMatthew G. Knepley PetscFE *feRef; 153397c42addSMatthew G. Knepley PetscFV *fvRef; 15347c927364SMatthew G. Knepley Vec fv, cv; 15357c927364SMatthew G. Knepley IS fis, cis; 15367c927364SMatthew G. Knepley PetscSection fsection, fglobalSection, csection, cglobalSection; 15377c927364SMatthew G. Knepley PetscInt *cmap, *cellCIndices, *cellFIndices, *cindices, *findices; 15380bd915a7SMatthew G. Knepley PetscInt cTotDim, fTotDim = 0, Nf, f, field, cStart, cEnd, cEndInterior, c, dim, d, startC, endC, offsetC, offsetF, m; 15397c927364SMatthew G. Knepley PetscErrorCode ierr; 15407c927364SMatthew G. Knepley 15417c927364SMatthew G. Knepley PetscFunctionBegin; 154275a69067SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1543c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dmf, &dim);CHKERRQ(ierr); 15447c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmf, &fsection);CHKERRQ(ierr); 15457c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmf, &fglobalSection);CHKERRQ(ierr); 15467c927364SMatthew G. Knepley ierr = DMGetDefaultSection(dmc, &csection);CHKERRQ(ierr); 15477c927364SMatthew G. Knepley ierr = DMGetDefaultGlobalSection(dmc, &cglobalSection);CHKERRQ(ierr); 15487c927364SMatthew G. Knepley ierr = PetscSectionGetNumFields(fsection, &Nf);CHKERRQ(ierr); 15497c927364SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmc, 0, &cStart, &cEnd);CHKERRQ(ierr); 15509ac3fadcSMatthew G. Knepley ierr = DMPlexGetHybridBounds(dmc, &cEndInterior, NULL, NULL, NULL);CHKERRQ(ierr); 15519ac3fadcSMatthew G. Knepley cEnd = cEndInterior < 0 ? cEnd : cEndInterior; 1552e9d4ef1bSMatthew G. Knepley ierr = DMGetDS(dmc, &prob);CHKERRQ(ierr); 155397c42addSMatthew G. Knepley ierr = PetscCalloc2(Nf,&feRef,Nf,&fvRef);CHKERRQ(ierr); 15547c927364SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 155597c42addSMatthew G. Knepley PetscObject obj; 155697c42addSMatthew G. Knepley PetscClassId id; 1557aa7890ccSMatthew G. Knepley PetscInt fNb = 0, Nc = 0; 15587c927364SMatthew G. Knepley 155997c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, f, &obj);CHKERRQ(ierr); 156097c42addSMatthew G. Knepley ierr = PetscObjectGetClassId(obj, &id);CHKERRQ(ierr); 156197c42addSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 156297c42addSMatthew G. Knepley PetscFE fe = (PetscFE) obj; 156397c42addSMatthew G. Knepley 15647c927364SMatthew G. Knepley ierr = PetscFERefine(fe, &feRef[f]);CHKERRQ(ierr); 15657c927364SMatthew G. Knepley ierr = PetscFEGetDimension(feRef[f], &fNb);CHKERRQ(ierr); 15667c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(fe, &Nc);CHKERRQ(ierr); 156797c42addSMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 156897c42addSMatthew G. Knepley PetscFV fv = (PetscFV) obj; 156997c42addSMatthew G. Knepley PetscDualSpace Q; 157097c42addSMatthew G. Knepley 157197c42addSMatthew G. Knepley ierr = PetscFVRefine(fv, &fvRef[f]);CHKERRQ(ierr); 157297c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[f], &Q);CHKERRQ(ierr); 157397c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(Q, &fNb);CHKERRQ(ierr); 157497c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fv, &Nc);CHKERRQ(ierr); 157597c42addSMatthew G. Knepley } 15767c927364SMatthew G. Knepley fTotDim += fNb*Nc; 15777c927364SMatthew G. Knepley } 1578e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetTotalDimension(prob, &cTotDim);CHKERRQ(ierr); 15797c927364SMatthew G. Knepley ierr = PetscMalloc1(cTotDim,&cmap);CHKERRQ(ierr); 15807c927364SMatthew G. Knepley for (field = 0, offsetC = 0, offsetF = 0; field < Nf; ++field) { 15817c927364SMatthew G. Knepley PetscFE feC; 158297c42addSMatthew G. Knepley PetscFV fvC; 15837c927364SMatthew G. Knepley PetscDualSpace QF, QC; 15847c927364SMatthew G. Knepley PetscInt NcF, NcC, fpdim, cpdim; 15857c927364SMatthew G. Knepley 158697c42addSMatthew G. Knepley if (feRef[field]) { 1587e9d4ef1bSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &feC);CHKERRQ(ierr); 15887c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feC, &NcC);CHKERRQ(ierr); 15897c927364SMatthew G. Knepley ierr = PetscFEGetNumComponents(feRef[field], &NcF);CHKERRQ(ierr); 15907c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feRef[field], &QF);CHKERRQ(ierr); 15917c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 15927c927364SMatthew G. Knepley ierr = PetscFEGetDualSpace(feC, &QC);CHKERRQ(ierr); 15937c927364SMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 159497c42addSMatthew G. Knepley } else { 159597c42addSMatthew G. Knepley ierr = PetscDSGetDiscretization(prob, field, (PetscObject *) &fvC);CHKERRQ(ierr); 159697c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvC, &NcC);CHKERRQ(ierr); 159797c42addSMatthew G. Knepley ierr = PetscFVGetNumComponents(fvRef[field], &NcF);CHKERRQ(ierr); 159897c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvRef[field], &QF);CHKERRQ(ierr); 159997c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QF, &fpdim);CHKERRQ(ierr); 160097c42addSMatthew G. Knepley ierr = PetscFVGetDualSpace(fvC, &QC);CHKERRQ(ierr); 160197c42addSMatthew G. Knepley ierr = PetscDualSpaceGetDimension(QC, &cpdim);CHKERRQ(ierr); 160297c42addSMatthew G. Knepley } 160397c42addSMatthew G. Knepley if (NcF != NcC) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Number of components in fine space field %d does not match coarse field %d", NcF, NcC); 16047c927364SMatthew G. Knepley for (c = 0; c < cpdim; ++c) { 16057c927364SMatthew G. Knepley PetscQuadrature cfunc; 16067c927364SMatthew G. Knepley const PetscReal *cqpoints; 16077c927364SMatthew G. Knepley PetscInt NpC; 160897c42addSMatthew G. Knepley PetscBool found = PETSC_FALSE; 16097c927364SMatthew G. Knepley 16107c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QC, c, &cfunc);CHKERRQ(ierr); 16117c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(cfunc, NULL, &NpC, &cqpoints, NULL);CHKERRQ(ierr); 161297c42addSMatthew G. Knepley if (NpC != 1 && feRef[field]) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not know how to do injection for moments"); 16137c927364SMatthew G. Knepley for (f = 0; f < fpdim; ++f) { 16147c927364SMatthew G. Knepley PetscQuadrature ffunc; 16157c927364SMatthew G. Knepley const PetscReal *fqpoints; 16167c927364SMatthew G. Knepley PetscReal sum = 0.0; 16177c927364SMatthew G. Knepley PetscInt NpF, comp; 16187c927364SMatthew G. Knepley 16197c927364SMatthew G. Knepley ierr = PetscDualSpaceGetFunctional(QF, f, &ffunc);CHKERRQ(ierr); 16207c927364SMatthew G. Knepley ierr = PetscQuadratureGetData(ffunc, NULL, &NpF, &fqpoints, NULL);CHKERRQ(ierr); 16217c927364SMatthew G. Knepley if (NpC != NpF) continue; 16227c927364SMatthew G. Knepley for (d = 0; d < dim; ++d) sum += PetscAbsReal(cqpoints[d] - fqpoints[d]); 16237c927364SMatthew G. Knepley if (sum > 1.0e-9) continue; 16247c927364SMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 16257c927364SMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+f)*NcF+comp; 16267c927364SMatthew G. Knepley } 162797c42addSMatthew G. Knepley found = PETSC_TRUE; 16287c927364SMatthew G. Knepley break; 16297c927364SMatthew G. Knepley } 163097c42addSMatthew G. Knepley if (!found) { 163197c42addSMatthew G. Knepley /* TODO We really want the average here, but some asshole put VecScatter in the interface */ 163297c42addSMatthew G. Knepley if (fvRef[field]) { 163397c42addSMatthew G. Knepley PetscInt comp; 163497c42addSMatthew G. Knepley for (comp = 0; comp < NcC; ++comp) { 163597c42addSMatthew G. Knepley cmap[(offsetC+c)*NcC+comp] = (offsetF+0)*NcF+comp; 163697c42addSMatthew G. Knepley } 163797c42addSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate matching functional for injection"); 163897c42addSMatthew G. Knepley } 16397c927364SMatthew G. Knepley } 16407c927364SMatthew G. Knepley offsetC += cpdim*NcC; 16417c927364SMatthew G. Knepley offsetF += fpdim*NcF; 16427c927364SMatthew G. Knepley } 164397c42addSMatthew G. Knepley for (f = 0; f < Nf; ++f) {ierr = PetscFEDestroy(&feRef[f]);CHKERRQ(ierr);ierr = PetscFVDestroy(&fvRef[f]);CHKERRQ(ierr);} 164497c42addSMatthew G. Knepley ierr = PetscFree2(feRef,fvRef);CHKERRQ(ierr); 16457c927364SMatthew G. Knepley 16467c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmf, &fv);CHKERRQ(ierr); 16477c927364SMatthew G. Knepley ierr = DMGetGlobalVector(dmc, &cv);CHKERRQ(ierr); 16480bd915a7SMatthew G. Knepley ierr = VecGetOwnershipRange(cv, &startC, &endC);CHKERRQ(ierr); 16497c927364SMatthew G. Knepley ierr = PetscSectionGetConstrainedStorageSize(cglobalSection, &m);CHKERRQ(ierr); 16507c927364SMatthew G. Knepley ierr = PetscMalloc2(cTotDim,&cellCIndices,fTotDim,&cellFIndices);CHKERRQ(ierr); 1651aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&cindices);CHKERRQ(ierr); 1652aa7da3c4SMatthew G. Knepley ierr = PetscMalloc1(m,&findices);CHKERRQ(ierr); 16537c927364SMatthew G. Knepley for (d = 0; d < m; ++d) cindices[d] = findices[d] = -1; 16547c927364SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 16557c927364SMatthew G. Knepley ierr = DMPlexMatGetClosureIndicesRefined(dmf, fsection, fglobalSection, dmc, csection, cglobalSection, c, cellCIndices, cellFIndices);CHKERRQ(ierr); 16567c927364SMatthew G. Knepley for (d = 0; d < cTotDim; ++d) { 16570bd915a7SMatthew G. Knepley if ((cellCIndices[d] < startC) || (cellCIndices[d] >= endC)) continue; 16587c927364SMatthew G. Knepley if ((findices[cellCIndices[d]-startC] >= 0) && (findices[cellCIndices[d]-startC] != cellFIndices[cmap[d]])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Coarse dof %d maps to both %d and %d", cindices[cellCIndices[d]-startC], findices[cellCIndices[d]-startC], cellFIndices[cmap[d]]); 16597c927364SMatthew G. Knepley cindices[cellCIndices[d]-startC] = cellCIndices[d]; 16607c927364SMatthew G. Knepley findices[cellCIndices[d]-startC] = cellFIndices[cmap[d]]; 16617c927364SMatthew G. Knepley } 16627c927364SMatthew G. Knepley } 16637c927364SMatthew G. Knepley ierr = PetscFree(cmap);CHKERRQ(ierr); 16647c927364SMatthew G. Knepley ierr = PetscFree2(cellCIndices,cellFIndices);CHKERRQ(ierr); 16657c927364SMatthew G. Knepley 16667c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, cindices, PETSC_OWN_POINTER, &cis);CHKERRQ(ierr); 16677c927364SMatthew G. Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, m, findices, PETSC_OWN_POINTER, &fis);CHKERRQ(ierr); 16687c927364SMatthew G. Knepley ierr = VecScatterCreate(cv, cis, fv, fis, sc);CHKERRQ(ierr); 16697c927364SMatthew G. Knepley ierr = ISDestroy(&cis);CHKERRQ(ierr); 16707c927364SMatthew G. Knepley ierr = ISDestroy(&fis);CHKERRQ(ierr); 16717c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmf, &fv);CHKERRQ(ierr); 16727c927364SMatthew G. Knepley ierr = DMRestoreGlobalVector(dmc, &cv);CHKERRQ(ierr); 167375a69067SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InjectorFEM,dmc,dmf,0,0);CHKERRQ(ierr); 1674cb1e1211SMatthew G Knepley PetscFunctionReturn(0); 1675cb1e1211SMatthew G Knepley } 1676