1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2d9deefdfSMatthew G. Knepley 3d9deefdfSMatthew G. Knepley /*@C 496ca5757SLisandro Dalcin DMPlexInvertCell - Flips cell orientations since Plex stores some of them internally with outward normals. 5d9deefdfSMatthew G. Knepley 6d9deefdfSMatthew G. Knepley Input Parameters: 796ca5757SLisandro Dalcin + cellType - The cell type 8d9deefdfSMatthew G. Knepley - cone - The incoming cone 9d9deefdfSMatthew G. Knepley 10d9deefdfSMatthew G. Knepley Output Parameter: 11d9deefdfSMatthew G. Knepley . cone - The inverted cone (in-place) 12d9deefdfSMatthew G. Knepley 13d9deefdfSMatthew G. Knepley Level: developer 14d9deefdfSMatthew G. Knepley 15d9deefdfSMatthew G. Knepley .seealso: DMPlexGenerate() 16d9deefdfSMatthew G. Knepley @*/ 1796ca5757SLisandro Dalcin PetscErrorCode DMPlexInvertCell(DMPolytopeType cellType, PetscInt cone[]) 18d9deefdfSMatthew G. Knepley { 1996ca5757SLisandro Dalcin #define SWAPCONE(cone,i,j) \ 2096ca5757SLisandro Dalcin do { \ 2196ca5757SLisandro Dalcin PetscInt _cone_tmp; \ 2296ca5757SLisandro Dalcin _cone_tmp = (cone)[i]; \ 2396ca5757SLisandro Dalcin (cone)[i] = (cone)[j]; \ 2496ca5757SLisandro Dalcin (cone)[j] = _cone_tmp; \ 2596ca5757SLisandro Dalcin } while (0) 26d9deefdfSMatthew G. Knepley 27d9deefdfSMatthew G. Knepley PetscFunctionBegin; 2896ca5757SLisandro Dalcin switch (cellType) { 2996ca5757SLisandro Dalcin case DM_POLYTOPE_POINT: break; 3096ca5757SLisandro Dalcin case DM_POLYTOPE_SEGMENT: break; 3196ca5757SLisandro Dalcin case DM_POLYTOPE_POINT_PRISM_TENSOR: break; 3296ca5757SLisandro Dalcin case DM_POLYTOPE_TRIANGLE: break; 3396ca5757SLisandro Dalcin case DM_POLYTOPE_QUADRILATERAL: break; 3496ca5757SLisandro Dalcin case DM_POLYTOPE_SEG_PRISM_TENSOR: SWAPCONE(cone,2,3); break; 3596ca5757SLisandro Dalcin case DM_POLYTOPE_TETRAHEDRON: SWAPCONE(cone,0,1); break; 3696ca5757SLisandro Dalcin case DM_POLYTOPE_HEXAHEDRON: SWAPCONE(cone,1,3); break; 3796ca5757SLisandro Dalcin case DM_POLYTOPE_TRI_PRISM: SWAPCONE(cone,1,2); break; 3896ca5757SLisandro Dalcin case DM_POLYTOPE_TRI_PRISM_TENSOR: break; 3996ca5757SLisandro Dalcin case DM_POLYTOPE_QUAD_PRISM_TENSOR: break; 40d9deefdfSMatthew G. Knepley default: break; 41d9deefdfSMatthew G. Knepley } 42d9deefdfSMatthew G. Knepley PetscFunctionReturn(0); 4396ca5757SLisandro Dalcin #undef SWAPCONE 4496ca5757SLisandro Dalcin } 4596ca5757SLisandro Dalcin 4696ca5757SLisandro Dalcin /*@C 4796ca5757SLisandro Dalcin DMPlexReorderCell - Flips cell orientations since Plex stores some of them internally with outward normals. 4896ca5757SLisandro Dalcin 4996ca5757SLisandro Dalcin Input Parameters: 5096ca5757SLisandro Dalcin + dm - The DMPlex object 5196ca5757SLisandro Dalcin . cell - The cell 5296ca5757SLisandro Dalcin - cone - The incoming cone 5396ca5757SLisandro Dalcin 5496ca5757SLisandro Dalcin Output Parameter: 5596ca5757SLisandro Dalcin . cone - The reordered cone (in-place) 5696ca5757SLisandro Dalcin 5796ca5757SLisandro Dalcin Level: developer 5896ca5757SLisandro Dalcin 5996ca5757SLisandro Dalcin .seealso: DMPlexGenerate() 6096ca5757SLisandro Dalcin @*/ 6196ca5757SLisandro Dalcin PetscErrorCode DMPlexReorderCell(DM dm, PetscInt cell, PetscInt cone[]) 6296ca5757SLisandro Dalcin { 6396ca5757SLisandro Dalcin DMPolytopeType cellType; 6496ca5757SLisandro Dalcin PetscErrorCode ierr; 6596ca5757SLisandro Dalcin 6696ca5757SLisandro Dalcin PetscFunctionBegin; 6796ca5757SLisandro Dalcin ierr = DMPlexGetCellType(dm, cell, &cellType);CHKERRQ(ierr); 6896ca5757SLisandro Dalcin ierr = DMPlexInvertCell(cellType, cone);CHKERRQ(ierr); 6996ca5757SLisandro Dalcin PetscFunctionReturn(0); 70d9deefdfSMatthew G. Knepley } 71d9deefdfSMatthew G. Knepley 72d9deefdfSMatthew G. Knepley 7394ef8ddeSSatish Balay /*@C 74d9deefdfSMatthew G. Knepley DMPlexTriangleSetOptions - Set the options used for the Triangle mesh generator 75d9deefdfSMatthew G. Knepley 76d9deefdfSMatthew G. Knepley Not Collective 77d9deefdfSMatthew G. Knepley 78d9deefdfSMatthew G. Knepley Inputs Parameters: 79d9deefdfSMatthew G. Knepley + dm - The DMPlex object 80d9deefdfSMatthew G. Knepley - opts - The command line options 81d9deefdfSMatthew G. Knepley 82d9deefdfSMatthew G. Knepley Level: developer 83d9deefdfSMatthew G. Knepley 84d9deefdfSMatthew G. Knepley .seealso: DMPlexTetgenSetOptions(), DMPlexGenerate() 85d9deefdfSMatthew G. Knepley @*/ 86d9deefdfSMatthew G. Knepley PetscErrorCode DMPlexTriangleSetOptions(DM dm, const char *opts) 87d9deefdfSMatthew G. Knepley { 88d9deefdfSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 89d9deefdfSMatthew G. Knepley PetscErrorCode ierr; 90d9deefdfSMatthew G. Knepley 91d9deefdfSMatthew G. Knepley PetscFunctionBegin; 92d9deefdfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93d9deefdfSMatthew G. Knepley PetscValidPointer(opts, 2); 94606ac3a5SMatthew G. Knepley ierr = PetscFree(mesh->triangleOpts);CHKERRQ(ierr); 95606ac3a5SMatthew G. Knepley ierr = PetscStrallocpy(opts, &mesh->triangleOpts);CHKERRQ(ierr); 96d9deefdfSMatthew G. Knepley PetscFunctionReturn(0); 97d9deefdfSMatthew G. Knepley } 98d9deefdfSMatthew G. Knepley 9994ef8ddeSSatish Balay /*@C 100d9deefdfSMatthew G. Knepley DMPlexTetgenSetOptions - Set the options used for the Tetgen mesh generator 101d9deefdfSMatthew G. Knepley 102d9deefdfSMatthew G. Knepley Not Collective 103d9deefdfSMatthew G. Knepley 104d9deefdfSMatthew G. Knepley Inputs Parameters: 105d9deefdfSMatthew G. Knepley + dm - The DMPlex object 106d9deefdfSMatthew G. Knepley - opts - The command line options 107d9deefdfSMatthew G. Knepley 108d9deefdfSMatthew G. Knepley Level: developer 109d9deefdfSMatthew G. Knepley 110d9deefdfSMatthew G. Knepley .seealso: DMPlexTriangleSetOptions(), DMPlexGenerate() 111d9deefdfSMatthew G. Knepley @*/ 112d9deefdfSMatthew G. Knepley PetscErrorCode DMPlexTetgenSetOptions(DM dm, const char *opts) 113d9deefdfSMatthew G. Knepley { 114d9deefdfSMatthew G. Knepley DM_Plex *mesh = (DM_Plex*) dm->data; 115d9deefdfSMatthew G. Knepley PetscErrorCode ierr; 116d9deefdfSMatthew G. Knepley 117d9deefdfSMatthew G. Knepley PetscFunctionBegin; 118d9deefdfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 119d9deefdfSMatthew G. Knepley PetscValidPointer(opts, 2); 120606ac3a5SMatthew G. Knepley ierr = PetscFree(mesh->tetgenOpts);CHKERRQ(ierr); 121606ac3a5SMatthew G. Knepley ierr = PetscStrallocpy(opts, &mesh->tetgenOpts);CHKERRQ(ierr); 122d9deefdfSMatthew G. Knepley PetscFunctionReturn(0); 123d9deefdfSMatthew G. Knepley } 124d9deefdfSMatthew G. Knepley 1253a074057SBarry Smith /* 1263a074057SBarry Smith Contains the list of registered DMPlexGenerators routines 1273a074057SBarry Smith */ 128*3f2a96e3SMatthew G. Knepley PlexGeneratorFunctionList DMPlexGenerateList = NULL; 129d9deefdfSMatthew G. Knepley 130d9deefdfSMatthew G. Knepley /*@C 131d9deefdfSMatthew G. Knepley DMPlexGenerate - Generates a mesh. 132d9deefdfSMatthew G. Knepley 133d9deefdfSMatthew G. Knepley Not Collective 134d9deefdfSMatthew G. Knepley 135d9deefdfSMatthew G. Knepley Input Parameters: 136d9deefdfSMatthew G. Knepley + boundary - The DMPlex boundary object 137d9deefdfSMatthew G. Knepley . name - The mesh generation package name 138d9deefdfSMatthew G. Knepley - interpolate - Flag to create intermediate mesh elements 139d9deefdfSMatthew G. Knepley 140d9deefdfSMatthew G. Knepley Output Parameter: 141d9deefdfSMatthew G. Knepley . mesh - The DMPlex object 142d9deefdfSMatthew G. Knepley 1432c4dacf2SBarry Smith Options Database: 1442c4dacf2SBarry Smith + -dm_plex_generate <name> - package to generate mesh, for example, triangle, ctetgen or tetgen 1452c4dacf2SBarry Smith - -dm_plex_generator <name> - package to generate mesh, for example, triangle, ctetgen or tetgen (deprecated) 1462c4dacf2SBarry Smith 147d9deefdfSMatthew G. Knepley Level: intermediate 148d9deefdfSMatthew G. Knepley 149d9deefdfSMatthew G. Knepley .seealso: DMPlexCreate(), DMRefine() 150d9deefdfSMatthew G. Knepley @*/ 151d9deefdfSMatthew G. Knepley PetscErrorCode DMPlexGenerate(DM boundary, const char name[], PetscBool interpolate, DM *mesh) 152d9deefdfSMatthew G. Knepley { 153*3f2a96e3SMatthew G. Knepley PlexGeneratorFunctionList fl; 154*3f2a96e3SMatthew G. Knepley char genname[PETSC_MAX_PATH_LEN]; 155*3f2a96e3SMatthew G. Knepley const char *suggestions; 156d9deefdfSMatthew G. Knepley PetscInt dim; 1573a074057SBarry Smith PetscBool flg; 158d9deefdfSMatthew G. Knepley PetscErrorCode ierr; 159d9deefdfSMatthew G. Knepley 160d9deefdfSMatthew G. Knepley PetscFunctionBegin; 161d9deefdfSMatthew G. Knepley PetscValidHeaderSpecific(boundary, DM_CLASSID, 1); 162d9deefdfSMatthew G. Knepley PetscValidLogicalCollectiveBool(boundary, interpolate, 2); 163d9deefdfSMatthew G. Knepley ierr = DMGetDimension(boundary, &dim);CHKERRQ(ierr); 164589a23caSBarry Smith ierr = PetscOptionsGetString(((PetscObject) boundary)->options,((PetscObject) boundary)->prefix, "-dm_plex_generator", genname, sizeof(genname), &flg);CHKERRQ(ierr); 165d9deefdfSMatthew G. Knepley if (flg) name = genname; 1662c4dacf2SBarry Smith else { 167589a23caSBarry Smith ierr = PetscOptionsGetString(((PetscObject) boundary)->options,((PetscObject) boundary)->prefix, "-dm_plex_generate", genname, sizeof(genname), &flg);CHKERRQ(ierr); 1682c4dacf2SBarry Smith if (flg) name = genname; 1692c4dacf2SBarry Smith } 1703a074057SBarry Smith 1713a074057SBarry Smith fl = DMPlexGenerateList; 172d9deefdfSMatthew G. Knepley if (name) { 1733a074057SBarry Smith while (fl) { 1743a074057SBarry Smith ierr = PetscStrcmp(fl->name,name,&flg);CHKERRQ(ierr); 1753a074057SBarry Smith if (flg) { 176367003a6SStefano Zampini ierr = (*fl->generate)(boundary,interpolate,mesh);CHKERRQ(ierr); 1773a074057SBarry Smith PetscFunctionReturn(0); 178d9deefdfSMatthew G. Knepley } 1793a074057SBarry Smith fl = fl->next; 180d9deefdfSMatthew G. Knepley } 1812c4dacf2SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Grid generator %s not registered; you may need to add --download-%s to your ./configure options",name,name); 1823a074057SBarry Smith } else { 1833a074057SBarry Smith while (fl) { 1843a074057SBarry Smith if (boundary->dim == fl->dim) { 185367003a6SStefano Zampini ierr = (*fl->generate)(boundary,interpolate,mesh);CHKERRQ(ierr); 1863a074057SBarry Smith PetscFunctionReturn(0); 1873a074057SBarry Smith } 1883a074057SBarry Smith fl = fl->next; 1893a074057SBarry Smith } 1902c4dacf2SBarry Smith suggestions = ""; 1912c4dacf2SBarry Smith if (boundary->dim+1 == 2) suggestions = " You may need to add --download-triangle to your ./configure options"; 1922c4dacf2SBarry Smith else if (boundary->dim+1 == 3) suggestions = " You may need to add --download-ctetgen or --download-tetgen in your ./configure options"; 1932c4dacf2SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"No grid generator of dimension %D registered%s",boundary->dim+1,suggestions); 1943a074057SBarry Smith } 1953a074057SBarry Smith } 1963a074057SBarry Smith 1973a074057SBarry Smith /*@C 1983a074057SBarry Smith DMPlexGenerateRegister - Adds a grid generator to DMPlex 1993a074057SBarry Smith 2003a074057SBarry Smith Not Collective 2013a074057SBarry Smith 2023a074057SBarry Smith Input Parameters: 203cd921712SStefano Zampini + name_solver - name of a new user-defined grid generator 2043a074057SBarry Smith . fnc - generator function 2053a074057SBarry Smith . rfnc - refinement function 206*3f2a96e3SMatthew G. Knepley . alfnc - adapt by label function 2073a074057SBarry Smith - dim - dimension of boundary of domain 2083a074057SBarry Smith 2093a074057SBarry Smith Notes: 2103a074057SBarry Smith DMPlexGenerateRegister() may be called multiple times to add several user-defined solvers. 2113a074057SBarry Smith 2123a074057SBarry Smith Sample usage: 2133a074057SBarry Smith .vb 214*3f2a96e3SMatthew G. Knepley DMPlexGenerateRegister("my_generator",MyGeneratorCreate,MyGeneratorRefiner,MyGeneratorAdaptor,dim); 2153a074057SBarry Smith .ve 2163a074057SBarry Smith 2173a074057SBarry Smith Then, your generator can be chosen with the procedural interface via 218cd921712SStefano Zampini $ DMPlexGenerate(dm,"my_generator",...) 2193a074057SBarry Smith or at runtime via the option 220cd921712SStefano Zampini $ -dm_plex_generator my_generator 2213a074057SBarry Smith 2223a074057SBarry Smith Level: advanced 2233a074057SBarry Smith 224cd921712SStefano Zampini .seealso: DMPlexGenerateRegisterAll(), DMPlexGenerate(), DMPlexGenerateRegisterDestroy() 2253a074057SBarry Smith 2263a074057SBarry Smith @*/ 227*3f2a96e3SMatthew G. Knepley PetscErrorCode DMPlexGenerateRegister(const char sname[], PetscErrorCode (*fnc)(DM, PetscBool, DM*), PetscErrorCode (*rfnc)(DM, PetscReal*, DM*), PetscErrorCode (*alfnc)(DM, DMLabel, DM*), PetscInt dim) 2283a074057SBarry Smith { 229*3f2a96e3SMatthew G. Knepley PlexGeneratorFunctionList entry; 2303a074057SBarry Smith PetscErrorCode ierr; 2313a074057SBarry Smith 2323a074057SBarry Smith PetscFunctionBegin; 2333a074057SBarry Smith ierr = PetscNew(&entry);CHKERRQ(ierr); 2343a074057SBarry Smith ierr = PetscStrallocpy(sname,&entry->name);CHKERRQ(ierr); 2353a074057SBarry Smith entry->generate = fnc; 2363a074057SBarry Smith entry->refine = rfnc; 237*3f2a96e3SMatthew G. Knepley entry->adaptlabel = alfnc; 2383a074057SBarry Smith entry->dim = dim; 2393a074057SBarry Smith entry->next = NULL; 2403a074057SBarry Smith if (!DMPlexGenerateList) DMPlexGenerateList = entry; 2413a074057SBarry Smith else { 242*3f2a96e3SMatthew G. Knepley PlexGeneratorFunctionList fl = DMPlexGenerateList; 2433a074057SBarry Smith while (fl->next) fl = fl->next; 2443a074057SBarry Smith fl->next = entry; 2453a074057SBarry Smith } 2463a074057SBarry Smith PetscFunctionReturn(0); 2473a074057SBarry Smith } 2483a074057SBarry Smith 2493a074057SBarry Smith extern PetscBool DMPlexGenerateRegisterAllCalled; 2503a074057SBarry Smith 2513a074057SBarry Smith PetscErrorCode DMPlexGenerateRegisterDestroy(void) 2523a074057SBarry Smith { 253*3f2a96e3SMatthew G. Knepley PlexGeneratorFunctionList next,fl; 2543a074057SBarry Smith PetscErrorCode ierr; 2553a074057SBarry Smith 2563a074057SBarry Smith PetscFunctionBegin; 2573a074057SBarry Smith next = fl = DMPlexGenerateList; 2583a074057SBarry Smith while (next) { 2593a074057SBarry Smith next = fl ? fl->next : NULL; 2603a074057SBarry Smith if (fl) {ierr = PetscFree(fl->name);CHKERRQ(ierr);} 2613a074057SBarry Smith ierr = PetscFree(fl);CHKERRQ(ierr); 2623a074057SBarry Smith fl = next; 2633a074057SBarry Smith } 2643a074057SBarry Smith DMPlexGenerateList = NULL; 2653a074057SBarry Smith DMPlexGenerateRegisterAllCalled = PETSC_FALSE; 266d9deefdfSMatthew G. Knepley PetscFunctionReturn(0); 267d9deefdfSMatthew G. Knepley } 268