1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h> 4e8f14785SLisandro Dalcin 5e8f14785SLisandro Dalcin /* HashIJKL */ 6e8f14785SLisandro Dalcin 7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h> 8e8f14785SLisandro Dalcin 9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey; 10e8f14785SLisandro Dalcin 11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \ 12e8f14785SLisandro Dalcin PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \ 13e8f14785SLisandro Dalcin PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l))) 14e8f14785SLisandro Dalcin 15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \ 16e8f14785SLisandro Dalcin (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0) 17e8f14785SLisandro Dalcin 18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1) 19e8f14785SLisandro Dalcin 209f074e33SMatthew G Knepley 219f074e33SMatthew G Knepley /* 229a5b13a2SMatthew G Knepley DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell 23cd921712SStefano Zampini This assumes that the mesh is not interpolated from the depth of point p to the vertices 249f074e33SMatthew G Knepley */ 25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 269f074e33SMatthew G Knepley { 279f074e33SMatthew G Knepley const PetscInt *cone = NULL; 28cd921712SStefano Zampini PetscInt coneSize; 299f074e33SMatthew G Knepley PetscErrorCode ierr; 309f074e33SMatthew G Knepley 319f074e33SMatthew G Knepley PetscFunctionBegin; 329f074e33SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 349f074e33SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 35439ece16SMatthew G. Knepley ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr); 36439ece16SMatthew G. Knepley PetscFunctionReturn(0); 37439ece16SMatthew G. Knepley } 38439ece16SMatthew G. Knepley 39439ece16SMatthew G. Knepley /* 40439ece16SMatthew G. Knepley DMPlexRestoreFaces_Internal - Restores the array 41439ece16SMatthew G. Knepley */ 42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 43439ece16SMatthew G. Knepley { 44439ece16SMatthew G. Knepley PetscErrorCode ierr; 45439ece16SMatthew G. Knepley 46439ece16SMatthew G. Knepley PetscFunctionBegin; 47cd921712SStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 48439ece16SMatthew G. Knepley PetscFunctionReturn(0); 49439ece16SMatthew G. Knepley } 50439ece16SMatthew G. Knepley 51439ece16SMatthew G. Knepley /* 52439ece16SMatthew G. Knepley DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone 53439ece16SMatthew G. Knepley */ 54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 55439ece16SMatthew G. Knepley { 56439ece16SMatthew G. Knepley PetscInt *facesTmp; 57439ece16SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 58439ece16SMatthew G. Knepley PetscErrorCode ierr; 59439ece16SMatthew G. Knepley 60439ece16SMatthew G. Knepley PetscFunctionBegin; 61439ece16SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62cd921712SStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 63439ece16SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 6469291d52SBarry Smith if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 659f074e33SMatthew G Knepley switch (dim) { 66c49d9212SMatthew G. Knepley case 1: 67c49d9212SMatthew G. Knepley switch (coneSize) { 68c49d9212SMatthew G. Knepley case 2: 69c49d9212SMatthew G. Knepley if (faces) { 70c49d9212SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 71c49d9212SMatthew G. Knepley *faces = facesTmp; 72c49d9212SMatthew G. Knepley } 73c49d9212SMatthew G. Knepley if (numFaces) *numFaces = 2; 74c49d9212SMatthew G. Knepley if (faceSize) *faceSize = 1; 75c49d9212SMatthew G. Knepley break; 76c49d9212SMatthew G. Knepley default: 7799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 78c49d9212SMatthew G. Knepley } 79c49d9212SMatthew G. Knepley break; 809f074e33SMatthew G Knepley case 2: 819f074e33SMatthew G Knepley switch (coneSize) { 829f074e33SMatthew G Knepley case 3: 839a5b13a2SMatthew G Knepley if (faces) { 849a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 859a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 869a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 879a5b13a2SMatthew G Knepley *faces = facesTmp; 889a5b13a2SMatthew G Knepley } 899a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 909a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 919f074e33SMatthew G Knepley break; 929f074e33SMatthew G Knepley case 4: 939a5b13a2SMatthew G Knepley /* Vertices follow right hand rule */ 949a5b13a2SMatthew G Knepley if (faces) { 959a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 969a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 979a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[3]; 989a5b13a2SMatthew G Knepley facesTmp[6] = cone[3]; facesTmp[7] = cone[0]; 999a5b13a2SMatthew G Knepley *faces = facesTmp; 1009a5b13a2SMatthew G Knepley } 1019a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1029a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1039f074e33SMatthew G Knepley break; 1049f074e33SMatthew G Knepley default: 10599836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1069f074e33SMatthew G Knepley } 1079f074e33SMatthew G Knepley break; 1089f074e33SMatthew G Knepley case 3: 1099f074e33SMatthew G Knepley switch (coneSize) { 1109f074e33SMatthew G Knepley case 3: 1119a5b13a2SMatthew G Knepley if (faces) { 1129a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 1139a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 1149a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 1159a5b13a2SMatthew G Knepley *faces = facesTmp; 1169a5b13a2SMatthew G Knepley } 1179a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 1189a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1199f074e33SMatthew G Knepley break; 1209f074e33SMatthew G Knepley case 4: 1212e1b13c2SMatthew G. Knepley /* Vertices of first face follow right hand rule and normal points away from last vertex */ 1229a5b13a2SMatthew G Knepley if (faces) { 1232e1b13c2SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; 1242e1b13c2SMatthew G. Knepley facesTmp[3] = cone[0]; facesTmp[4] = cone[3]; facesTmp[5] = cone[1]; 1252e1b13c2SMatthew G. Knepley facesTmp[6] = cone[0]; facesTmp[7] = cone[2]; facesTmp[8] = cone[3]; 1262e1b13c2SMatthew G. Knepley facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3]; 1279a5b13a2SMatthew G Knepley *faces = facesTmp; 1289a5b13a2SMatthew G Knepley } 1299a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1309a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 3; 1319a5b13a2SMatthew G Knepley break; 1329a5b13a2SMatthew G Knepley case 8: 133e368ef20SMatthew G. Knepley /* 7--------6 134e368ef20SMatthew G. Knepley /| /| 135e368ef20SMatthew G. Knepley / | / | 136e368ef20SMatthew G. Knepley 4--------5 | 137e368ef20SMatthew G. Knepley | | | | 138e368ef20SMatthew G. Knepley | | | | 139e368ef20SMatthew G. Knepley | 1--------2 140e368ef20SMatthew G. Knepley | / | / 141e368ef20SMatthew G. Knepley |/ |/ 142e368ef20SMatthew G. Knepley 0--------3 143e368ef20SMatthew G. Knepley */ 1449a5b13a2SMatthew G Knepley if (faces) { 14551cfd6a4SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; /* Bottom */ 14651cfd6a4SMatthew G. Knepley facesTmp[4] = cone[4]; facesTmp[5] = cone[5]; facesTmp[6] = cone[6]; facesTmp[7] = cone[7]; /* Top */ 14751cfd6a4SMatthew G. Knepley facesTmp[8] = cone[0]; facesTmp[9] = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */ 14851cfd6a4SMatthew G. Knepley facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */ 14951cfd6a4SMatthew G. Knepley facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */ 15051cfd6a4SMatthew G. Knepley facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */ 1519a5b13a2SMatthew G Knepley *faces = facesTmp; 1529a5b13a2SMatthew G Knepley } 1539a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 6; 1549a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 4; 1559f074e33SMatthew G Knepley break; 1569f074e33SMatthew G Knepley default: 15799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1589f074e33SMatthew G Knepley } 1599f074e33SMatthew G Knepley break; 1609f074e33SMatthew G Knepley default: 16199836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 1629f074e33SMatthew G Knepley } 1639f074e33SMatthew G Knepley PetscFunctionReturn(0); 1649f074e33SMatthew G Knepley } 1659f074e33SMatthew G Knepley 16699836e0eSStefano Zampini /* 16799836e0eSStefano Zampini DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms) 16899836e0eSStefano Zampini */ 16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 17099836e0eSStefano Zampini { 17199836e0eSStefano Zampini PetscInt *facesTmp; 17299836e0eSStefano Zampini PetscInt maxConeSize, maxSupportSize; 17399836e0eSStefano Zampini PetscErrorCode ierr; 17499836e0eSStefano Zampini 17599836e0eSStefano Zampini PetscFunctionBegin; 17699836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17799836e0eSStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 17899836e0eSStefano Zampini ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 17999836e0eSStefano Zampini if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 18099836e0eSStefano Zampini switch (dim) { 18199836e0eSStefano Zampini case 1: 18299836e0eSStefano Zampini switch (coneSize) { 18399836e0eSStefano Zampini case 2: 18499836e0eSStefano Zampini if (faces) { 18599836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 18699836e0eSStefano Zampini *faces = facesTmp; 18799836e0eSStefano Zampini } 18899836e0eSStefano Zampini if (numFaces) *numFaces = 2; 18999836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 19099836e0eSStefano Zampini if (faceSize) *faceSize = 1; 19199836e0eSStefano Zampini break; 19299836e0eSStefano Zampini default: 19399836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 19499836e0eSStefano Zampini } 19599836e0eSStefano Zampini break; 19699836e0eSStefano Zampini case 2: 19799836e0eSStefano Zampini switch (coneSize) { 19899836e0eSStefano Zampini case 4: 19999836e0eSStefano Zampini if (faces) { 20099836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 20199836e0eSStefano Zampini facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; 20299836e0eSStefano Zampini facesTmp[4] = cone[0]; facesTmp[5] = cone[2]; 20399836e0eSStefano Zampini facesTmp[6] = cone[1]; facesTmp[7] = cone[3]; 20499836e0eSStefano Zampini *faces = facesTmp; 20599836e0eSStefano Zampini } 20699836e0eSStefano Zampini if (numFaces) *numFaces = 4; 20799836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 20899836e0eSStefano Zampini if (faceSize) *faceSize = 2; 20999836e0eSStefano Zampini break; 21099836e0eSStefano Zampini default: 21199836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 21299836e0eSStefano Zampini } 21399836e0eSStefano Zampini break; 21499836e0eSStefano Zampini case 3: 21599836e0eSStefano Zampini switch (coneSize) { 21699836e0eSStefano Zampini case 6: /* triangular prism */ 21799836e0eSStefano Zampini if (faces) { 21899836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = -1; /* Bottom */ 21999836e0eSStefano Zampini facesTmp[4] = cone[3]; facesTmp[5] = cone[4]; facesTmp[6] = cone[5]; facesTmp[7] = -1; /* Top */ 22099836e0eSStefano Zampini facesTmp[8] = cone[0]; facesTmp[9] = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */ 22199836e0eSStefano Zampini facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */ 22299836e0eSStefano Zampini facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */ 22399836e0eSStefano Zampini *faces = facesTmp; 22499836e0eSStefano Zampini } 22599836e0eSStefano Zampini if (numFaces) *numFaces = 5; 22699836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 22799836e0eSStefano Zampini if (faceSize) *faceSize = -4; 22899836e0eSStefano Zampini break; 22999836e0eSStefano Zampini default: 23099836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 23199836e0eSStefano Zampini } 23299836e0eSStefano Zampini break; 23399836e0eSStefano Zampini default: 23499836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 23599836e0eSStefano Zampini } 23699836e0eSStefano Zampini PetscFunctionReturn(0); 23799836e0eSStefano Zampini } 23899836e0eSStefano Zampini 23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24099836e0eSStefano Zampini { 24199836e0eSStefano Zampini PetscErrorCode ierr; 24299836e0eSStefano Zampini 24399836e0eSStefano Zampini PetscFunctionBegin; 24499836e0eSStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 24599836e0eSStefano Zampini PetscFunctionReturn(0); 24699836e0eSStefano Zampini } 24799836e0eSStefano Zampini 24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24999836e0eSStefano Zampini { 25099836e0eSStefano Zampini const PetscInt *cone = NULL; 25199836e0eSStefano Zampini PetscInt coneSize; 25299836e0eSStefano Zampini PetscErrorCode ierr; 25399836e0eSStefano Zampini 25499836e0eSStefano Zampini PetscFunctionBegin; 25599836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25799836e0eSStefano Zampini ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 25899836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr); 25999836e0eSStefano Zampini PetscFunctionReturn(0); 26099836e0eSStefano Zampini } 26199836e0eSStefano Zampini 2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */ 2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm) 2649f074e33SMatthew G Knepley { 265d4efc6f1SMatthew G. Knepley DMLabel subpointMap; 2669a5b13a2SMatthew G Knepley PetscHashIJKL faceTable; 2679a5b13a2SMatthew G Knepley PetscInt *pStart, *pEnd; 2689a5b13a2SMatthew G Knepley PetscInt cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d; 269e9fa77a1SMatthew G. Knepley PetscInt coneSizeH = 0, faceSizeAllH = 0, faceSizeAllT = 0, numCellFacesH = 0, faceT = 0, faceH, pMax = -1, dim, outerloop; 27099836e0eSStefano Zampini PetscInt cMax, fMax, eMax, vMax; 2719f074e33SMatthew G Knepley PetscErrorCode ierr; 2729f074e33SMatthew G Knepley 2739f074e33SMatthew G Knepley PetscFunctionBegin; 274c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 275d4efc6f1SMatthew G. Knepley /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */ 276d4efc6f1SMatthew G. Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 277d4efc6f1SMatthew G. Knepley if (subpointMap) ++cellDim; 2789a5b13a2SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2799a5b13a2SMatthew G Knepley ++depth; 2809a5b13a2SMatthew G Knepley ++cellDepth; 2819a5b13a2SMatthew G Knepley cellDim -= depth - cellDepth; 282dcca6d9dSJed Brown ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr); 2839a5b13a2SMatthew G Knepley for (d = depth-1; d >= faceDepth; --d) { 2849a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr); 2859f074e33SMatthew G Knepley } 2869a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr); 2879a5b13a2SMatthew G Knepley pEnd[faceDepth] = pStart[faceDepth]; 2889a5b13a2SMatthew G Knepley for (d = faceDepth-1; d >= 0; --d) { 2899a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2909f074e33SMatthew G Knepley } 29199836e0eSStefano Zampini cMax = fMax = eMax = vMax = PETSC_DETERMINE; 29299836e0eSStefano Zampini ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 29399836e0eSStefano Zampini if (cellDim == dim) { 29499836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 29599836e0eSStefano Zampini pMax = cMax; 29699836e0eSStefano Zampini } else if (cellDim == dim -1) { 29799836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr); 29899836e0eSStefano Zampini pMax = fMax; 29999836e0eSStefano Zampini } 30099836e0eSStefano Zampini pMax = pMax < 0 ? pEnd[cellDepth] : pMax; 30199836e0eSStefano Zampini if (pMax < pEnd[cellDepth]) { 30299836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 30399836e0eSStefano Zampini PetscInt numCellFacesT, faceSize, cf; 3049f074e33SMatthew G Knepley 305e9fa77a1SMatthew G. Knepley /* First get normal cell face size (we now allow hybrid cells to meet normal cells on either hybrid or normal faces */ 3065ebdaad1SMatthew G. Knepley if (pStart[cellDepth] < pMax) {ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);} 307e9fa77a1SMatthew G. Knepley 30899836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr); 30999836e0eSStefano Zampini ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr); 31099836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 31199836e0eSStefano Zampini if (faceSize < 0) { 31299836e0eSStefano Zampini PetscInt *sizes, minv, maxv; 31399836e0eSStefano Zampini 31499836e0eSStefano Zampini /* count vertices of hybrid and non-hybrid faces */ 31599836e0eSStefano Zampini ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr); 31699836e0eSStefano Zampini for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */ 31799836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 31899836e0eSStefano Zampini PetscInt f; 31999836e0eSStefano Zampini 32099836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0); 32199836e0eSStefano Zampini } 32299836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr); 32399836e0eSStefano Zampini minv = sizes[0]; 32499836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesT-1, 0)]; 32599836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv); 326e9fa77a1SMatthew G. Knepley faceSizeAllT = minv; 327580bdb30SBarry Smith ierr = PetscArrayzero(sizes, numCellFacesH);CHKERRQ(ierr); 32899836e0eSStefano Zampini for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */ 32999836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 33099836e0eSStefano Zampini PetscInt f; 33199836e0eSStefano Zampini 33299836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0); 33399836e0eSStefano Zampini } 33499836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr); 33599836e0eSStefano Zampini minv = sizes[0]; 33699836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)]; 33799836e0eSStefano Zampini ierr = PetscFree(sizes);CHKERRQ(ierr); 33899836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv); 33999836e0eSStefano Zampini faceSizeAllH = minv; 3405ebdaad1SMatthew G. Knepley if (!faceSizeAll) faceSizeAll = faceSizeAllT; 34199836e0eSStefano Zampini } else { /* the size of the faces in hybrid cells is the same */ 342e9fa77a1SMatthew G. Knepley faceSizeAll = faceSizeAllH = faceSizeAllT = faceSize; 34399836e0eSStefano Zampini } 34499836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 34599836e0eSStefano Zampini } else if (pEnd[cellDepth] > pStart[cellDepth]) { 34699836e0eSStefano Zampini ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr); 347a1bcd873SMatthew G. Knepley faceSizeAllH = faceSizeAllT = faceSizeAll; 34899836e0eSStefano Zampini } 34999836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 35099836e0eSStefano Zampini 351b135d7daSStefano Zampini /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid faces 35299836e0eSStefano Zampini Then, faces for non-hybrid cells are numbered. 35399836e0eSStefano Zampini This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */ 35499836e0eSStefano Zampini ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 35599836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 35699836e0eSStefano Zampini PetscInt start, end; 35799836e0eSStefano Zampini 35899836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 35999836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 36099836e0eSStefano Zampini for (c = start; c < end; ++c) { 36199836e0eSStefano Zampini const PetscInt *cellFaces; 362e9fa77a1SMatthew G. Knepley PetscInt numCellFaces, faceSize, faceSizeInc, faceSizeCheck, cf; 36399836e0eSStefano Zampini 36499836e0eSStefano Zampini if (c < pMax) { 3659a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 3669a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 367e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAll; 36899836e0eSStefano Zampini } else { /* Hybrid cell */ 36999836e0eSStefano Zampini const PetscInt *cone; 37099836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 37199836e0eSStefano Zampini 37299836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 37399836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 37499836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 37599836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 37699836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 37799836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 37899836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 37999836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 380e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAllT; 38199836e0eSStefano Zampini } 38299836e0eSStefano Zampini faceSizeInc = faceSize; 3839f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 38499836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 38599836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 3869a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 387e8f14785SLisandro Dalcin PetscHashIter iter; 388e8f14785SLisandro Dalcin PetscBool missing; 3899f074e33SMatthew G Knepley 39099836e0eSStefano Zampini if (faceSizeInc == 2) { 3919a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 3929a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 39399836e0eSStefano Zampini key.k = PETSC_MAX_INT; 39499836e0eSStefano Zampini key.l = PETSC_MAX_INT; 3959a5b13a2SMatthew G Knepley } else { 39699836e0eSStefano Zampini key.i = cellFace[0]; 39799836e0eSStefano Zampini key.j = cellFace[1]; 39899836e0eSStefano Zampini key.k = cellFace[2]; 39999836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 400302440fdSBarry Smith ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 4019f074e33SMatthew G Knepley } 40299836e0eSStefano Zampini /* this check is redundant for non-hybrid meshes */ 403e9fa77a1SMatthew G. Knepley if (faceSizeH != faceSizeCheck) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeCheck); 404e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 405e9fa77a1SMatthew G. Knepley if (missing) { 406e9fa77a1SMatthew G. Knepley ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr); 407e9fa77a1SMatthew G. Knepley if (c >= pMax) ++faceT; 408e9fa77a1SMatthew G. Knepley } 4099a5b13a2SMatthew G Knepley } 41099836e0eSStefano Zampini if (c < pMax) { 411439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 41299836e0eSStefano Zampini } else { 41399836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 41499836e0eSStefano Zampini } 41599836e0eSStefano Zampini } 41699836e0eSStefano Zampini } 41799836e0eSStefano Zampini pEnd[faceDepth] = face; 41899836e0eSStefano Zampini 41999836e0eSStefano Zampini /* Second pass for hybrid meshes: number hybrid faces */ 42099836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 42199836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 42299836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 42399836e0eSStefano Zampini 42499836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 42599836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 42699836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 42799836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 42899836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 42999836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 43099836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 43199836e0eSStefano Zampini PetscHashIJKLKey key; 43299836e0eSStefano Zampini PetscHashIter iter; 43399836e0eSStefano Zampini PetscBool missing; 43499836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 43599836e0eSStefano Zampini 43699836e0eSStefano Zampini if (faceSize == 2) { 43799836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 43899836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 43999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 44099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 44199836e0eSStefano Zampini } else { 44299836e0eSStefano Zampini key.i = cellFace[0]; 44399836e0eSStefano Zampini key.j = cellFace[1]; 44499836e0eSStefano Zampini key.k = cellFace[2]; 44599836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 44699836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 44799836e0eSStefano Zampini } 44899836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 44999836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 45099836e0eSStefano Zampini if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 45199836e0eSStefano Zampini } 45299836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 45399836e0eSStefano Zampini } 45499836e0eSStefano Zampini faceH = face - pEnd[faceDepth]; 45599836e0eSStefano Zampini if (faceH) { 45699836e0eSStefano Zampini if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth]; 45799836e0eSStefano Zampini else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth]; 45899836e0eSStefano Zampini else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim); 4599a5b13a2SMatthew G Knepley } 4609a5b13a2SMatthew G Knepley pEnd[faceDepth] = face; 4619a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 4629a5b13a2SMatthew G Knepley /* Count new points */ 4639a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4649a5b13a2SMatthew G Knepley numPoints += pEnd[d]-pStart[d]; 4659a5b13a2SMatthew G Knepley } 4669a5b13a2SMatthew G Knepley ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr); 4679a5b13a2SMatthew G Knepley /* Set cone sizes */ 4689a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4699a5b13a2SMatthew G Knepley PetscInt coneSize, p; 4709f074e33SMatthew G Knepley 4719a5b13a2SMatthew G Knepley if (d == faceDepth) { 472e9fa77a1SMatthew G. Knepley /* Now we have two cases: */ 473e9fa77a1SMatthew G. Knepley if (faceSizeAll == faceSizeAllT) { 4749a5b13a2SMatthew G Knepley /* I see no way to do this if we admit faces of different shapes */ 47599836e0eSStefano Zampini for (p = pStart[d]; p < pEnd[d]-faceH; ++p) { 4769a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 4779a5b13a2SMatthew G Knepley } 47899836e0eSStefano Zampini for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 47999836e0eSStefano Zampini ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 48099836e0eSStefano Zampini } 481e9fa77a1SMatthew G. Knepley } else if (faceSizeAll == faceSizeAllH) { 482e9fa77a1SMatthew G. Knepley for (p = pStart[d]; p < pStart[d]+faceT; ++p) { 483e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllT);CHKERRQ(ierr); 484e9fa77a1SMatthew G. Knepley } 485e9fa77a1SMatthew G. Knepley for (p = pStart[d]+faceT; p < pEnd[d]-faceH; ++p) { 486e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 487e9fa77a1SMatthew G. Knepley } 488e9fa77a1SMatthew G. Knepley for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 489e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 490e9fa77a1SMatthew G. Knepley } 491e9fa77a1SMatthew G. Knepley } else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent faces sizes N: %D T: %D H: %D", faceSizeAll, faceSizeAllT, faceSizeAllH); 492a014044eSMatthew G Knepley } else if (d == cellDepth) { 493a014044eSMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 494a014044eSMatthew G Knepley /* Number of cell faces may be different from number of cell vertices*/ 49599836e0eSStefano Zampini if (p < pMax) { 496a014044eSMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr); 49799836e0eSStefano Zampini } else { 49899836e0eSStefano Zampini ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr); 49999836e0eSStefano Zampini } 500a014044eSMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 501a014044eSMatthew G Knepley } 5029a5b13a2SMatthew G Knepley } else { 5039a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5049a5b13a2SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 5059a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 5069f074e33SMatthew G Knepley } 5079f074e33SMatthew G Knepley } 5089f074e33SMatthew G Knepley } 5099f074e33SMatthew G Knepley ierr = DMSetUp(idm);CHKERRQ(ierr); 5109f074e33SMatthew G Knepley /* Get face cones from subsets of cell vertices */ 51199836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 5129a5b13a2SMatthew G Knepley ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 5139a5b13a2SMatthew G Knepley for (d = depth; d > cellDepth; --d) { 5149a5b13a2SMatthew G Knepley const PetscInt *cone; 5159a5b13a2SMatthew G Knepley PetscInt p; 5169a5b13a2SMatthew G Knepley 5179a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5189a5b13a2SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 5199a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr); 5209a5b13a2SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr); 5219a5b13a2SMatthew G Knepley ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr); 5229f074e33SMatthew G Knepley } 5239a5b13a2SMatthew G Knepley } 52499836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 52599836e0eSStefano Zampini PetscInt start, end; 5269f074e33SMatthew G Knepley 52799836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 52899836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 52999836e0eSStefano Zampini for (c = start; c < end; ++c) { 53099836e0eSStefano Zampini const PetscInt *cellFaces; 53199836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 53299836e0eSStefano Zampini 53399836e0eSStefano Zampini if (c < pMax) { 5349a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 5359a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 53699836e0eSStefano Zampini } else { 53799836e0eSStefano Zampini const PetscInt *cone; 53899836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 53999836e0eSStefano Zampini 54099836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 54199836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 54299836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 54399836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 54499836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 54599836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 54699836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 54799836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 54899836e0eSStefano Zampini } 54999836e0eSStefano Zampini faceSizeInc = faceSize; 5509f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 55199836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 5529a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 553e8f14785SLisandro Dalcin PetscHashIter iter; 554e8f14785SLisandro Dalcin PetscBool missing; 5559f074e33SMatthew G Knepley 55699836e0eSStefano Zampini if (faceSizeInc == 2) { 5579a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 5589a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 55999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 56099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 5619a5b13a2SMatthew G Knepley } else { 562e8f14785SLisandro Dalcin key.i = cellFace[0]; 563e8f14785SLisandro Dalcin key.j = cellFace[1]; 564e8f14785SLisandro Dalcin key.k = cellFace[2]; 56599836e0eSStefano Zampini key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 56699836e0eSStefano Zampini ierr = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr); 5679f074e33SMatthew G Knepley } 568e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 569735a0255SMatthew G. Knepley if (missing) { 5709a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 571e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 572735a0255SMatthew G. Knepley ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 5739a5b13a2SMatthew G Knepley } else { 5749a5b13a2SMatthew G Knepley const PetscInt *cone; 575735a0255SMatthew G. Knepley PetscInt coneSize, ornt, i, j, f; 5769f074e33SMatthew G Knepley 577e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 5789a5b13a2SMatthew G Knepley ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 5792e1b13c2SMatthew G. Knepley /* Orient face: Do not allow reverse orientation at the first vertex */ 5809f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 5819f074e33SMatthew G Knepley ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 5829a5b13a2SMatthew G Knepley if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize); 5839a5b13a2SMatthew G Knepley /* - First find the initial vertex */ 5849a5b13a2SMatthew G Knepley for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break; 5859a5b13a2SMatthew G Knepley /* - Try forward comparison */ 5869a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break; 5879a5b13a2SMatthew G Knepley if (j == faceSize) { 5889a5b13a2SMatthew G Knepley if ((faceSize == 2) && (i == 1)) ornt = -2; 5899a5b13a2SMatthew G Knepley else ornt = i; 5909a5b13a2SMatthew G Knepley } else { 5919a5b13a2SMatthew G Knepley /* - Try backward comparison */ 5929a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break; 5932e1b13c2SMatthew G. Knepley if (j == faceSize) { 5942e1b13c2SMatthew G. Knepley if (i == 0) ornt = -faceSize; 595dc1a705cSMatthew G. Knepley else ornt = -i; 596e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 5979a5b13a2SMatthew G Knepley } 5989a5b13a2SMatthew G Knepley ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 5999f074e33SMatthew G Knepley } 6009f074e33SMatthew G Knepley } 60199836e0eSStefano Zampini if (c < pMax) { 602439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 60399836e0eSStefano Zampini } else { 60499836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 6059f074e33SMatthew G Knepley } 60699836e0eSStefano Zampini } 60799836e0eSStefano Zampini } 60899836e0eSStefano Zampini /* Second pass for hybrid meshes: orient hybrid faces */ 60999836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 61099836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 61199836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 61299836e0eSStefano Zampini 61399836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 61499836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 61599836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 61699836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 61799836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 61899836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 61999836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 62099836e0eSStefano Zampini PetscHashIJKLKey key; 62199836e0eSStefano Zampini PetscHashIter iter; 62299836e0eSStefano Zampini PetscBool missing; 62399836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 62499836e0eSStefano Zampini 62599836e0eSStefano Zampini if (faceSize == 2) { 62699836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 62799836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 62899836e0eSStefano Zampini key.k = PETSC_MAX_INT; 62999836e0eSStefano Zampini key.l = PETSC_MAX_INT; 63099836e0eSStefano Zampini } else { 63199836e0eSStefano Zampini key.i = cellFace[0]; 63299836e0eSStefano Zampini key.j = cellFace[1]; 63399836e0eSStefano Zampini key.k = cellFace[2]; 63499836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 63599836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 63699836e0eSStefano Zampini } 63799836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 63899836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 63999836e0eSStefano Zampini if (missing) { 64099836e0eSStefano Zampini ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 64199836e0eSStefano Zampini ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 64299836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 64399836e0eSStefano Zampini } else { 644e9fa77a1SMatthew G. Knepley PetscInt fv[4] = {0, 1, 2, 3}; 64599836e0eSStefano Zampini const PetscInt *cone; 64699836e0eSStefano Zampini PetscInt coneSize, ornt, i, j, f; 647a74221b0SStefano Zampini PetscBool q2h = PETSC_FALSE; 64899836e0eSStefano Zampini 64999836e0eSStefano Zampini ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 65099836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 65199836e0eSStefano Zampini /* Orient face: Do not allow reverse orientation at the first vertex */ 65299836e0eSStefano Zampini ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 65399836e0eSStefano Zampini ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 65499836e0eSStefano Zampini if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH); 655e9fa77a1SMatthew G. Knepley /* Hybrid faces are stored as tensor products of edges, so to compare them to normal faces, we have to flip */ 656a74221b0SStefano Zampini if (faceSize == 4 && c >= pMax && faceSizeAll != faceSizeAllT && f < pEnd[faceDepth] - faceH) {q2h = PETSC_TRUE; fv[2] = 3; fv[3] = 2;} 65799836e0eSStefano Zampini /* - First find the initial vertex */ 658e9fa77a1SMatthew G. Knepley for (i = 0; i < faceSizeH; ++i) if (cellFace[fv[0]] == cone[i]) break; 659a74221b0SStefano Zampini if (q2h) { /* Matt's case: hybrid faces meeting with non-hybrid faces. This is a case that is not (and will not be) supported in general by the refinements */ 66099836e0eSStefano Zampini /* - Try forward comparison */ 661e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+j)%faceSizeH]) break; 66299836e0eSStefano Zampini if (j == faceSizeH) { 66399836e0eSStefano Zampini if ((faceSizeH == 2) && (i == 1)) ornt = -2; 66499836e0eSStefano Zampini else ornt = i; 66599836e0eSStefano Zampini } else { 66699836e0eSStefano Zampini /* - Try backward comparison */ 667e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+faceSizeH-j)%faceSizeH]) break; 66899836e0eSStefano Zampini if (j == faceSizeH) { 66999836e0eSStefano Zampini if (i == 0) ornt = -faceSizeH; 67099836e0eSStefano Zampini else ornt = -i; 671e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 67299836e0eSStefano Zampini } 673a74221b0SStefano Zampini } else { 674a74221b0SStefano Zampini /* when matching hybrid faces in 3D, only few cases are possible. 675a74221b0SStefano Zampini Face traversal however can no longer follow the usual convention, this seems a serious issue to me */ 676a74221b0SStefano Zampini PetscInt tquad_map[4][4] = { {PETSC_MIN_INT, 0,PETSC_MIN_INT,PETSC_MIN_INT}, 677a74221b0SStefano Zampini { -1,PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT}, 678a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT, 1}, 679a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT, -2,PETSC_MIN_INT} }; 680a74221b0SStefano Zampini PetscInt i2; 681a74221b0SStefano Zampini 682a74221b0SStefano Zampini /* find the second vertex */ 683a74221b0SStefano Zampini for (i2 = 0; i2 < faceSizeH; ++i2) if (cellFace[fv[1]] == cone[i2]) break; 684a74221b0SStefano Zampini switch (faceSizeH) { 685a74221b0SStefano Zampini case 2: 686a74221b0SStefano Zampini ornt = i ? -2 : 0; 687a74221b0SStefano Zampini break; 688a74221b0SStefano Zampini case 4: 689a74221b0SStefano Zampini ornt = tquad_map[i][i2]; 690a74221b0SStefano Zampini break; 691a74221b0SStefano Zampini default: 692a74221b0SStefano Zampini SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unhandled face size %D for face %D in cell %D", faceSizeH, f, c); 693a74221b0SStefano Zampini 694a74221b0SStefano Zampini } 695a74221b0SStefano Zampini } 69699836e0eSStefano Zampini ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 69799836e0eSStefano Zampini } 69899836e0eSStefano Zampini } 69999836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 70099836e0eSStefano Zampini } 70199836e0eSStefano Zampini if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]); 702c907b753SJed Brown ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 7039a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 7046551a8c7SMatthew G. Knepley ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 70599836e0eSStefano Zampini ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 7069a5b13a2SMatthew G Knepley ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr); 7079a5b13a2SMatthew G Knepley ierr = DMPlexStratify(idm);CHKERRQ(ierr); 7089f074e33SMatthew G Knepley PetscFunctionReturn(0); 7099f074e33SMatthew G Knepley } 7109f074e33SMatthew G Knepley 711f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[]) 712f80536cbSVaclav Hapla { 713f80536cbSVaclav Hapla PetscInt nleaves; 714f80536cbSVaclav Hapla PetscInt nranks; 715a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 716a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL, *rmine=NULL, *rremote=NULL; 717f80536cbSVaclav Hapla PetscInt n, o, r; 718f80536cbSVaclav Hapla PetscErrorCode ierr; 719f80536cbSVaclav Hapla 720f80536cbSVaclav Hapla PetscFunctionBegin; 721dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr); 722f80536cbSVaclav Hapla nleaves = roffset[nranks]; 723f80536cbSVaclav Hapla ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr); 724f80536cbSVaclav Hapla for (r=0; r<nranks; r++) { 725f80536cbSVaclav Hapla /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote 726f80536cbSVaclav Hapla - to unify order with the other side */ 727f80536cbSVaclav Hapla o = roffset[r]; 728f80536cbSVaclav Hapla n = roffset[r+1] - o; 729580bdb30SBarry Smith ierr = PetscArraycpy(&(*rmine1)[o], &rmine[o], n);CHKERRQ(ierr); 730580bdb30SBarry Smith ierr = PetscArraycpy(&(*rremote1)[o], &rremote[o], n);CHKERRQ(ierr); 731f80536cbSVaclav Hapla ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr); 732f80536cbSVaclav Hapla } 733f80536cbSVaclav Hapla PetscFunctionReturn(0); 734f80536cbSVaclav Hapla } 735f80536cbSVaclav Hapla 736*27d0e99aSVaclav Hapla PetscErrorCode DMPlexOrientInterface_Internal(DM dm) 7372e745bdaSMatthew G. Knepley { 738*27d0e99aSVaclav Hapla /* Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 739*27d0e99aSVaclav Hapla PetscInt masterCone[2]; 740cae7fe92SVaclav Hapla PetscInt (*roots)[2], (*leaves)[2]; 7418a650c75SVaclav Hapla PetscMPIInt (*rootsRanks)[2], (*leavesRanks)[2]; 742*27d0e99aSVaclav Hapla 743*27d0e99aSVaclav Hapla PetscSF sf=NULL; 744a0d42dbcSVaclav Hapla const PetscInt *locals=NULL; 745a0d42dbcSVaclav Hapla const PetscSFNode *remotes=NULL; 7468a650c75SVaclav Hapla PetscInt nroots, nleaves, p, c; 747f80536cbSVaclav Hapla PetscInt nranks, n, o, r; 748a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 749a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL; 750a0d42dbcSVaclav Hapla PetscInt *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */ 751a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 752adeface4SVaclav Hapla PetscInt coneSize, ind0; 7532e745bdaSMatthew G. Knepley MPI_Comm comm; 754*27d0e99aSVaclav Hapla PetscMPIInt rank,size; 7552e745bdaSMatthew G. Knepley PetscInt debug = 0; 7562e745bdaSMatthew G. Knepley PetscErrorCode ierr; 7572e745bdaSMatthew G. Knepley 7582e745bdaSMatthew G. Knepley PetscFunctionBegin; 759df6a9fadSVaclav Hapla ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 7602e745bdaSMatthew G. Knepley ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr); 7613ede9f65SMatthew G. Knepley if (nroots < 0) PetscFunctionReturn(0); 762f80536cbSVaclav Hapla ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 763dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr); 764dc21a0bfSVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr); 765*27d0e99aSVaclav Hapla #if defined(PETSC_USE_DEBUG) 766dc21a0bfSVaclav Hapla ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr); 767dc21a0bfSVaclav Hapla #endif 768f80536cbSVaclav Hapla ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr); 7698a650c75SVaclav Hapla ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr); 7702e745bdaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 7712e745bdaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 772*27d0e99aSVaclav Hapla ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7739e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 7749e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 7759e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 776*27d0e99aSVaclav Hapla if (coneSize < 2) { 777*27d0e99aSVaclav Hapla for (c = 0; c < 2; c++) { 778*27d0e99aSVaclav Hapla roots[p][c] = -1; 779*27d0e99aSVaclav Hapla rootsRanks[p][c] = -1; 780*27d0e99aSVaclav Hapla } 781*27d0e99aSVaclav Hapla continue; 782*27d0e99aSVaclav Hapla } 7832e745bdaSMatthew G. Knepley /* Translate all points to root numbering */ 7848a650c75SVaclav Hapla for (c = 0; c < 2; c++) { 7858a650c75SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 7868a650c75SVaclav Hapla if (ind0 < 0) { 7878a650c75SVaclav Hapla roots[p][c] = cone[c]; 7888a650c75SVaclav Hapla rootsRanks[p][c] = rank; 789c8148b97SVaclav Hapla } else { 7908a650c75SVaclav Hapla roots[p][c] = remotes[ind0].index; 7918a650c75SVaclav Hapla rootsRanks[p][c] = remotes[ind0].rank; 7928a650c75SVaclav Hapla } 7932e745bdaSMatthew G. Knepley } 7942e745bdaSMatthew G. Knepley } 7959e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 7968ccb905dSVaclav Hapla for (c = 0; c < 2; c++) { 7978ccb905dSVaclav Hapla leaves[p][c] = -2; 7988ccb905dSVaclav Hapla leavesRanks[p][c] = -2; 7998ccb905dSVaclav Hapla } 800c8148b97SVaclav Hapla } 8012e745bdaSMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8028a650c75SVaclav Hapla ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 8032e745bdaSMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8048a650c75SVaclav Hapla ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 805c8148b97SVaclav Hapla if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 806*27d0e99aSVaclav Hapla if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referenced roots\n");CHKERRQ(ierr);} 8079e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8089e24d8a0SVaclav Hapla if (leaves[p][0] < 0) continue; 8099e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8109e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 811*27d0e99aSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %4D: cone=[%4D %4D] roots=[(%d,%4D) (%d,%4D)] leaves=[(%d,%4D) (%d,%4D)]", rank, p, cone[0], cone[1], rootsRanks[p][0], roots[p][0], rootsRanks[p][1], roots[p][1], leavesRanks[p][0], leaves[p][0], leavesRanks[p][1], leaves[p][1]);CHKERRQ(ierr);} 81282f5c0aeSVaclav Hapla if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][1] != rootsRanks[p][1])) { 813*27d0e99aSVaclav Hapla /* Translate these two leaves to my cone points; masterCone means desired order p's cone points */ 814f80536cbSVaclav Hapla for (c = 0; c < 2; c++) { 815*27d0e99aSVaclav Hapla if (leavesRanks[p][c] == rank) { 816*27d0e99aSVaclav Hapla /* A local leave is just taken as it is */ 817*27d0e99aSVaclav Hapla masterCone[c] = leaves[p][c]; 818*27d0e99aSVaclav Hapla continue; 819*27d0e99aSVaclav Hapla } 820f80536cbSVaclav Hapla /* Find index of rank leavesRanks[p][c] among remote ranks */ 821f80536cbSVaclav Hapla /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */ 822f80536cbSVaclav Hapla ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr); 823*27d0e99aSVaclav Hapla if (PetscUnlikely(r < 0)) SETERRQ7(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D cone[%D]=%D root (%d,%D) leave (%d,%D): leave rank not found among remote ranks",p,c,cone[c],rootsRanks[p][c],roots[p][c],leavesRanks[p][c],leaves[p][c]); 824*27d0e99aSVaclav Hapla if (PetscUnlikely(ranks[r] < 0 || ranks[r] >= size)) SETERRQ5(PETSC_COMM_SELF, PETSC_ERR_PLIB, "p=%D c=%D commsize=%d: ranks[%D] = %d makes no sense",p,c,size,r,ranks[r]); 825f80536cbSVaclav Hapla /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */ 826f80536cbSVaclav Hapla o = roffset[r]; 827f80536cbSVaclav Hapla n = roffset[r+1] - o; 828f80536cbSVaclav Hapla ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr); 829*27d0e99aSVaclav Hapla if (PetscUnlikely(ind0 < 0)) SETERRQ7(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D cone[%D]=%D root (%d,%D) leave (%d,%D): corresponding remote point not found - it seems there is missing connection in point SF!",p,c,cone[c],rootsRanks[p][c],roots[p][c],leavesRanks[p][c],leaves[p][c]); 830f80536cbSVaclav Hapla /* Get the corresponding local point */ 831f80536cbSVaclav Hapla masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr); 832f80536cbSVaclav Hapla } 833*27d0e99aSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, " masterCone=[%4D %4D]\n", masterCone[0], masterCone[1]);CHKERRQ(ierr);} 834*27d0e99aSVaclav Hapla /* Set the desired order of p's cone points and fix orientations accordingly */ 835f80536cbSVaclav Hapla /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 836f80536cbSVaclav Hapla ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr); 837*27d0e99aSVaclav Hapla } else if (debug) {ierr = PetscSynchronizedPrintf(comm, " ==\n");CHKERRQ(ierr);} 83823aaf07bSVaclav Hapla } 839*27d0e99aSVaclav Hapla if (debug) { 840*27d0e99aSVaclav Hapla ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 841*27d0e99aSVaclav Hapla ierr = MPI_Barrier(comm);CHKERRQ(ierr); 8422e745bdaSMatthew G. Knepley } 843adeface4SVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr); 8448a650c75SVaclav Hapla ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr); 8457c7bb832SVaclav Hapla ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr); 8462e745bdaSMatthew G. Knepley PetscFunctionReturn(0); 8472e745bdaSMatthew G. Knepley } 8482e745bdaSMatthew G. Knepley 8492e72742cSMatthew G. Knepley static PetscErrorCode IntArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], const char valname[], PetscInt n, const PetscInt a[]) 8507bffde78SMichael Lange { 8512e72742cSMatthew G. Knepley PetscInt idx; 8522e72742cSMatthew G. Knepley PetscMPIInt rank; 8532e72742cSMatthew G. Knepley PetscBool flg; 8547bffde78SMichael Lange PetscErrorCode ierr; 8557bffde78SMichael Lange 8567bffde78SMichael Lange PetscFunctionBegin; 8572e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 8582e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 8592e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8602e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 8612e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D %s %D\n", rank, idxname, idx, valname, a[idx]);CHKERRQ(ierr);} 8622e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8632e72742cSMatthew G. Knepley PetscFunctionReturn(0); 8642e72742cSMatthew G. Knepley } 8652e72742cSMatthew G. Knepley 8662e72742cSMatthew G. Knepley static PetscErrorCode SFNodeArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], PetscInt n, const PetscSFNode a[]) 8672e72742cSMatthew G. Knepley { 8682e72742cSMatthew G. Knepley PetscInt idx; 8692e72742cSMatthew G. Knepley PetscMPIInt rank; 8702e72742cSMatthew G. Knepley PetscBool flg; 8712e72742cSMatthew G. Knepley PetscErrorCode ierr; 8722e72742cSMatthew G. Knepley 8732e72742cSMatthew G. Knepley PetscFunctionBegin; 8742e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 8752e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 8762e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8772e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 8782e72742cSMatthew G. Knepley if (idxname) { 8792e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D rank %D index %D\n", rank, idxname, idx, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 8802e72742cSMatthew G. Knepley } else { 8812e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]rank %D index %D\n", rank, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 8822e72742cSMatthew G. Knepley } 8832e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8842e72742cSMatthew G. Knepley PetscFunctionReturn(0); 8852e72742cSMatthew G. Knepley } 8862e72742cSMatthew G. Knepley 8872e72742cSMatthew G. Knepley static PetscErrorCode DMPlexMapToLocalPoint(PetscHMapIJ roothash, const PetscInt localPoints[], PetscMPIInt rank, PetscSFNode remotePoint, PetscInt *localPoint) 8882e72742cSMatthew G. Knepley { 8892e72742cSMatthew G. Knepley PetscErrorCode ierr; 8902e72742cSMatthew G. Knepley 8912e72742cSMatthew G. Knepley PetscFunctionBegin; 8922e72742cSMatthew G. Knepley if (remotePoint.rank == rank) { 8932e72742cSMatthew G. Knepley *localPoint = remotePoint.index; 8942e72742cSMatthew G. Knepley } else { 8952e72742cSMatthew G. Knepley PetscHashIJKey key; 8962e72742cSMatthew G. Knepley PetscInt root; 8972e72742cSMatthew G. Knepley 8982e72742cSMatthew G. Knepley key.i = remotePoint.index; 8992e72742cSMatthew G. Knepley key.j = remotePoint.rank; 9002e72742cSMatthew G. Knepley ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 9012e72742cSMatthew G. Knepley if (root >= 0) { 9022e72742cSMatthew G. Knepley *localPoint = localPoints[root]; 9032e72742cSMatthew G. Knepley } else PetscFunctionReturn(1); 9042e72742cSMatthew G. Knepley } 9052e72742cSMatthew G. Knepley PetscFunctionReturn(0); 9062e72742cSMatthew G. Knepley } 9072e72742cSMatthew G. Knepley 9082e72742cSMatthew G. Knepley /*@ 9092e72742cSMatthew G. Knepley DMPlexInterpolatePointSF - Insert interpolated points in the overlap into the PointSF in parallel, following local interpolation 9102e72742cSMatthew G. Knepley 911d083f849SBarry Smith Collective on dm 9122e72742cSMatthew G. Knepley 9132e72742cSMatthew G. Knepley Input Parameters: 9142e72742cSMatthew G. Knepley + dm - The interpolated DM 9152e72742cSMatthew G. Knepley - pointSF - The initial SF without interpolated points 9162e72742cSMatthew G. Knepley 9172e72742cSMatthew G. Knepley Output Parameter: 9182e72742cSMatthew G. Knepley . pointSF - The SF including interpolated points 9192e72742cSMatthew G. Knepley 9202e72742cSMatthew G. Knepley Level: intermediate 9212e72742cSMatthew G. Knepley 9222e72742cSMatthew G. Knepley Note: All debugging for this process can be turned on with the options: -dm_interp_pre_view -petscsf_interp_pre_view -petscsection_interp_candidate_view -petscsection_interp_candidate_remote_view -petscsection_interp_claim_view -petscsf_interp_pre_view -dmplex_interp_debug 9232e72742cSMatthew G. Knepley 9242e72742cSMatthew G. Knepley .seealso: DMPlexInterpolate(), DMPlexUninterpolate() 9252e72742cSMatthew G. Knepley @*/ 926e53487d3SMatthew G. Knepley PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF) 9272e72742cSMatthew G. Knepley { 9282e72742cSMatthew G. Knepley /* 9292e72742cSMatthew G. Knepley Okay, the algorithm is: 9302e72742cSMatthew G. Knepley - Take each point in the overlap (root) 9312e72742cSMatthew G. Knepley - Look at the neighboring points in the overlap (candidates) 9322e72742cSMatthew G. Knepley - Send these candidate points to neighbors 9332e72742cSMatthew G. Knepley - Neighbor checks for edge between root and candidate 9342e72742cSMatthew G. Knepley - If edge is found, it replaces candidate point with edge point 9352e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 9362e72742cSMatthew G. Knepley - Original guy checks for edges, different from original candidate, and gets its own edge 9372e72742cSMatthew G. Knepley - This pair is put into SF 9382e72742cSMatthew G. Knepley 9392e72742cSMatthew G. Knepley We need a new algorithm that tolerates groups larger than 2. 9402e72742cSMatthew G. Knepley - Take each point in the overlap (root) 9412e72742cSMatthew G. Knepley - Find all collections of points in the overlap which make faces (do early join) 9422e72742cSMatthew G. Knepley - Send collections as candidates (add size as first number) 94366aa2a39SMatthew G. Knepley - Make sure to send collection to all owners of all overlap points in collection 9442e72742cSMatthew G. Knepley - Neighbor check for face in collections 9452e72742cSMatthew G. Knepley - If face is found, it replaces candidate point with face point 9462e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 9472e72742cSMatthew G. Knepley - Original guy checks for faces, different from original candidate, and gets its own face 9482e72742cSMatthew G. Knepley - This pair is put into SF 9492e72742cSMatthew G. Knepley */ 9502e72742cSMatthew G. Knepley PetscHMapI leafhash; 9512e72742cSMatthew G. Knepley PetscHMapIJ roothash; 9522e72742cSMatthew G. Knepley const PetscInt *localPoints, *rootdegree; 9532e72742cSMatthew G. Knepley const PetscSFNode *remotePoints; 9542e72742cSMatthew G. Knepley PetscSFNode *candidates, *candidatesRemote, *claims; 9552e72742cSMatthew G. Knepley PetscSection candidateSection, candidateSectionRemote, claimSection; 9562e72742cSMatthew G. Knepley PetscInt numLeaves, l, numRoots, r, candidatesSize, candidatesRemoteSize; 9572e72742cSMatthew G. Knepley PetscMPIInt size, rank; 9582e72742cSMatthew G. Knepley PetscHashIJKey key; 9592e72742cSMatthew G. Knepley PetscBool debug = PETSC_FALSE; 9602e72742cSMatthew G. Knepley PetscErrorCode ierr; 9612e72742cSMatthew G. Knepley 9622e72742cSMatthew G. Knepley PetscFunctionBegin; 9632e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, ((PetscObject) dm)->prefix, "-dmplex_interp_debug", &debug);CHKERRQ(ierr); 9649852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 9657bffde78SMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 9667bffde78SMichael Lange ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 9679852e123SBarry Smith if (size < 2 || numRoots < 0) PetscFunctionReturn(0); 968f240e3b7SVaclav Hapla ierr = DMPlexGetOverlap(dm, &r);CHKERRQ(ierr); 969f240e3b7SVaclav Hapla if (r) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Interpolation of overlapped DMPlex not implemented yet"); 9702e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) dm, NULL, "-dm_interp_pre_view");CHKERRQ(ierr); 9712e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) pointSF, NULL, "-petscsf_interp_pre_view");CHKERRQ(ierr); 97225afeb17SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 9737bffde78SMichael Lange /* Build hashes of points in the SF for efficient lookup */ 974e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr); 975e8f14785SLisandro Dalcin ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr); 9762e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 9772e72742cSMatthew G. Knepley key.i = remotePoints[l].index; 9782e72742cSMatthew G. Knepley key.j = remotePoints[l].rank; 9792e72742cSMatthew G. Knepley ierr = PetscHMapISet(leafhash, localPoints[l], l);CHKERRQ(ierr); 9802e72742cSMatthew G. Knepley ierr = PetscHMapIJSet(roothash, key, l);CHKERRQ(ierr); 9817bffde78SMichael Lange } 98266aa2a39SMatthew G. Knepley /* Compute root degree to identify shared points */ 9832e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr); 9842e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr); 9852e72742cSMatthew G. Knepley ierr = IntArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-interp_root_degree_view", "Root degree", "point", "degree", numRoots, rootdegree);CHKERRQ(ierr); 98666aa2a39SMatthew G. Knepley /* Build a section / SFNode array of candidate points (face bd points) in the cone(support(leaf)), 98766aa2a39SMatthew G. Knepley where each candidate is defined by a set of remote points (roots) for the other points that define the face. */ 9887bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr); 9897bffde78SMichael Lange ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr); 9907bffde78SMichael Lange { 99166aa2a39SMatthew G. Knepley PetscHMapIJ facehash; 9922e72742cSMatthew G. Knepley 99366aa2a39SMatthew G. Knepley ierr = PetscHMapIJCreate(&facehash);CHKERRQ(ierr); 9942e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 9952e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 9962e72742cSMatthew G. Knepley const PetscInt *support; 9972e72742cSMatthew G. Knepley PetscInt supportSize, s; 9982e72742cSMatthew G. Knepley 9992e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 10002e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 10012e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 10022e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 10032e72742cSMatthew G. Knepley const PetscInt face = support[s]; 10042e72742cSMatthew G. Knepley const PetscInt *cone; 10052e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 10062e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 10072e72742cSMatthew G. Knepley 10082e72742cSMatthew G. Knepley /* Only add face once */ 10092e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 101066aa2a39SMatthew G. Knepley key.i = localPoint; 101166aa2a39SMatthew G. Knepley key.j = face; 101266aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 10132e72742cSMatthew G. Knepley if (f >= 0) continue; 10142e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 10152e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 10162e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 10172e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10182e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 10192e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10202e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 10212e72742cSMatthew G. Knepley } 10222e72742cSMatthew G. Knepley if (isFace) { 102366aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found shared face %D\n", rank, face);CHKERRQ(ierr);} 102466aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 10252e72742cSMatthew G. Knepley ierr = PetscSectionAddDof(candidateSection, localPoint, coneSize);CHKERRQ(ierr); 10267bffde78SMichael Lange } 10277bffde78SMichael Lange } 10282e72742cSMatthew G. Knepley } 10292e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 103066aa2a39SMatthew G. Knepley ierr = PetscHMapIJClear(facehash);CHKERRQ(ierr); 10317bffde78SMichael Lange ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr); 10327bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr); 10337bffde78SMichael Lange ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr); 10342e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 10352e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 10362e72742cSMatthew G. Knepley const PetscInt *support; 10372e72742cSMatthew G. Knepley PetscInt supportSize, s, offset, idx = 0; 10382e72742cSMatthew G. Knepley 10392e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 10402e72742cSMatthew G. Knepley ierr = PetscSectionGetOffset(candidateSection, localPoint, &offset);CHKERRQ(ierr); 10412e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 10422e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 10432e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 10442e72742cSMatthew G. Knepley const PetscInt face = support[s]; 10452e72742cSMatthew G. Knepley const PetscInt *cone; 10462e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 10472e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 10482e72742cSMatthew G. Knepley 10492e72742cSMatthew G. Knepley /* Only add face once */ 10502e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 105166aa2a39SMatthew G. Knepley key.i = localPoint; 105266aa2a39SMatthew G. Knepley key.j = face; 105366aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 10542e72742cSMatthew G. Knepley if (f >= 0) continue; 10552e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 10562e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 10572e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 10582e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10592e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 10602e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10612e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 10622e72742cSMatthew G. Knepley } 10632e72742cSMatthew G. Knepley if (isFace) { 106466aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding shared face %D at idx %D\n", rank, face, idx);CHKERRQ(ierr);} 106566aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 10662e72742cSMatthew G. Knepley candidates[offset+idx].rank = -1; 10672e72742cSMatthew G. Knepley candidates[offset+idx++].index = coneSize-1; 10682e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10692e72742cSMatthew G. Knepley if (cone[c] == localPoint) continue; 10702e72742cSMatthew G. Knepley if (rootdegree[cone[c]]) { 10712e72742cSMatthew G. Knepley candidates[offset+idx].rank = rank; 10722e72742cSMatthew G. Knepley candidates[offset+idx++].index = cone[c]; 10732e72742cSMatthew G. Knepley } else { 10742e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10752e72742cSMatthew G. Knepley if (root < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot locate local point %D in SF", cone[c]); 10762e72742cSMatthew G. Knepley candidates[offset+idx++] = remotePoints[root]; 10777bffde78SMichael Lange } 10787bffde78SMichael Lange } 10792e72742cSMatthew G. Knepley } 10802e72742cSMatthew G. Knepley } 10812e72742cSMatthew G. Knepley } 10822e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 108366aa2a39SMatthew G. Knepley ierr = PetscHMapIJDestroy(&facehash);CHKERRQ(ierr); 10842e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSection, NULL, "-petscsection_interp_candidate_view");CHKERRQ(ierr); 10852e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_view", "Candidates", NULL, candidatesSize, candidates);CHKERRQ(ierr); 10867bffde78SMichael Lange } 10877bffde78SMichael Lange /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */ 10882e72742cSMatthew G. Knepley /* Note that this section is indexed by offsets into leaves, not by point number */ 10897bffde78SMichael Lange { 10907bffde78SMichael Lange PetscSF sfMulti, sfInverse, sfCandidates; 10917bffde78SMichael Lange PetscInt *remoteOffsets; 10922e72742cSMatthew G. Knepley 10937bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 10947bffde78SMichael Lange ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr); 10957bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr); 10967bffde78SMichael Lange ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr); 10977bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr); 10987bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr); 10997bffde78SMichael Lange ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr); 11007bffde78SMichael Lange ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 11017bffde78SMichael Lange ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 11027bffde78SMichael Lange ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr); 11037bffde78SMichael Lange ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr); 11047bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 11052e72742cSMatthew G. Knepley 11062e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSectionRemote, NULL, "-petscsection_interp_candidate_remote_view");CHKERRQ(ierr); 11072e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_remote_view", "Remote Candidates", NULL, candidatesRemoteSize, candidatesRemote);CHKERRQ(ierr); 11087bffde78SMichael Lange } 11092e72742cSMatthew G. Knepley /* */ 11107bffde78SMichael Lange { 11112e72742cSMatthew G. Knepley PetscInt idx; 11122e72742cSMatthew G. Knepley /* There is a section point for every leaf attached to a given root point */ 11132e72742cSMatthew G. Knepley for (r = 0, idx = 0; r < numRoots; ++r) { 11142e72742cSMatthew G. Knepley PetscInt deg; 11152e72742cSMatthew G. Knepley for (deg = 0; deg < rootdegree[r]; ++deg, ++idx) { 11162e72742cSMatthew G. Knepley PetscInt offset, dof, d; 11172e72742cSMatthew G. Knepley 11187bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr); 11197bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr); 11202e72742cSMatthew G. Knepley for (d = 0; d < dof; ++d) { 11212e72742cSMatthew G. Knepley const PetscInt sizeInd = offset+d; 11222e72742cSMatthew G. Knepley const PetscInt numPoints = candidatesRemote[sizeInd].index; 11232e72742cSMatthew G. Knepley const PetscInt *join = NULL; 11242e72742cSMatthew G. Knepley PetscInt points[1024], p, joinSize; 11252e72742cSMatthew G. Knepley 11262e72742cSMatthew G. Knepley points[0] = r; 11272e72742cSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 11282e72742cSMatthew G. Knepley ierr = DMPlexMapToLocalPoint(roothash, localPoints, rank, candidatesRemote[offset+(++d)], &points[p+1]); 11292e72742cSMatthew G. Knepley if (ierr) {d += numPoints-1 - p; break;} /* We got a point not in our overlap */ 11302e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local candidate %D\n", rank, points[p+1]);CHKERRQ(ierr);} 11317bffde78SMichael Lange } 11322e72742cSMatthew G. Knepley if (ierr) continue; 11332e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11347bffde78SMichael Lange if (joinSize == 1) { 11352e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding face %D at idx %D\n", rank, join[0], sizeInd);CHKERRQ(ierr);} 11362e72742cSMatthew G. Knepley candidatesRemote[sizeInd].rank = rank; 11372e72742cSMatthew G. Knepley candidatesRemote[sizeInd].index = join[0]; 11387bffde78SMichael Lange } 11392e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11407bffde78SMichael Lange } 11417bffde78SMichael Lange } 11427bffde78SMichael Lange } 11432e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 11447bffde78SMichael Lange } 11457bffde78SMichael Lange /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */ 11467bffde78SMichael Lange { 11477bffde78SMichael Lange PetscSF sfMulti, sfClaims, sfPointNew; 11487bffde78SMichael Lange PetscSFNode *remotePointsNew; 11492e72742cSMatthew G. Knepley PetscHMapI claimshash; 11502e72742cSMatthew G. Knepley PetscInt *remoteOffsets, *localPointsNew; 11512e72742cSMatthew G. Knepley PetscInt claimsSize, pStart, pEnd, root, numLocalNew, p, d; 11522e72742cSMatthew G. Knepley 11537bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 11547bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr); 11557bffde78SMichael Lange ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr); 11567bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr); 11572e72742cSMatthew G. Knepley ierr = PetscSectionGetStorageSize(claimSection, &claimsSize);CHKERRQ(ierr); 11582e72742cSMatthew G. Knepley ierr = PetscMalloc1(claimsSize, &claims);CHKERRQ(ierr); 11597bffde78SMichael Lange ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 11607bffde78SMichael Lange ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 11617bffde78SMichael Lange ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr); 11627bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 11632e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) claimSection, NULL, "-petscsection_interp_claim_view");CHKERRQ(ierr); 11642e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_claim_view", "Claims", NULL, claimsSize, claims);CHKERRQ(ierr); 11657bffde78SMichael Lange /* Walk the original section of local supports and add an SF entry for each updated item */ 1166e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr); 11677bffde78SMichael Lange for (p = 0; p < numRoots; ++p) { 11682e72742cSMatthew G. Knepley PetscInt dof, offset; 11692e72742cSMatthew G. Knepley 11702e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking root for claims %D\n", rank, p);CHKERRQ(ierr);} 11717bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr); 11727bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr); 11732e72742cSMatthew G. Knepley for (d = 0; d < dof;) { 11742e72742cSMatthew G. Knepley if (claims[offset+d].rank >= 0) { 11752e72742cSMatthew G. Knepley const PetscInt faceInd = offset+d; 11762e72742cSMatthew G. Knepley const PetscInt numPoints = candidates[faceInd].index; 11772e72742cSMatthew G. Knepley const PetscInt *join = NULL; 11782e72742cSMatthew G. Knepley PetscInt joinSize, points[1024], c; 11792e72742cSMatthew G. Knepley 11802e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found claim for remote point (%D, %D)\n", rank, claims[faceInd].rank, claims[faceInd].index);CHKERRQ(ierr);} 11812e72742cSMatthew G. Knepley points[0] = p; 11822e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[0]);CHKERRQ(ierr);} 11832e72742cSMatthew G. Knepley for (c = 0, ++d; c < numPoints; ++c, ++d) { 1184e8f14785SLisandro Dalcin key.i = candidates[offset+d].index; 1185e8f14785SLisandro Dalcin key.j = candidates[offset+d].rank; 1186e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 11872e72742cSMatthew G. Knepley points[c+1] = localPoints[root]; 11882e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[c+1]);CHKERRQ(ierr);} 11892e72742cSMatthew G. Knepley } 11902e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11912e72742cSMatthew G. Knepley if (joinSize == 1) { 11922e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found local face %D\n", rank, join[0]);CHKERRQ(ierr);} 11932e72742cSMatthew G. Knepley ierr = PetscHMapISet(claimshash, join[0], faceInd);CHKERRQ(ierr); 11942e72742cSMatthew G. Knepley } 11952e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11962e72742cSMatthew G. Knepley } else d += claims[offset+d].index+1; 11977bffde78SMichael Lange } 11987bffde78SMichael Lange } 11992e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 12007bffde78SMichael Lange /* Create new pointSF from hashed claims */ 1201e8f14785SLisandro Dalcin ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr); 12027bffde78SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 12037bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr); 12047bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr); 12057bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 12067bffde78SMichael Lange localPointsNew[p] = localPoints[p]; 12077bffde78SMichael Lange remotePointsNew[p].index = remotePoints[p].index; 12087bffde78SMichael Lange remotePointsNew[p].rank = remotePoints[p].rank; 12097bffde78SMichael Lange } 1210f3190fc2SToby Isaac p = numLeaves; 1211e8f14785SLisandro Dalcin ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr); 1212f3190fc2SToby Isaac ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr); 12137bffde78SMichael Lange for (p = numLeaves; p < numLeaves + numLocalNew; ++p) { 12142e72742cSMatthew G. Knepley PetscInt offset; 1215e8f14785SLisandro Dalcin ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr); 12167bffde78SMichael Lange remotePointsNew[p] = claims[offset]; 12177bffde78SMichael Lange } 12187bffde78SMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr); 12197bffde78SMichael Lange ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 12207bffde78SMichael Lange ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr); 12217bffde78SMichael Lange ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr); 1222e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr); 12237bffde78SMichael Lange } 1224e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr); 1225e8f14785SLisandro Dalcin ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr); 12267bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr); 12277bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr); 12287bffde78SMichael Lange ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr); 12297bffde78SMichael Lange ierr = PetscFree(candidates);CHKERRQ(ierr); 12307bffde78SMichael Lange ierr = PetscFree(candidatesRemote);CHKERRQ(ierr); 12317bffde78SMichael Lange ierr = PetscFree(claims);CHKERRQ(ierr); 123225afeb17SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 12337bffde78SMichael Lange PetscFunctionReturn(0); 12347bffde78SMichael Lange } 12357bffde78SMichael Lange 1236248eb259SVaclav Hapla /*@ 123780330477SMatthew G. Knepley DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc. 123880330477SMatthew G. Knepley 1239d083f849SBarry Smith Collective on dm 124080330477SMatthew G. Knepley 1241e56d480eSMatthew G. Knepley Input Parameters: 1242e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices 124310a67516SMatthew G. Knepley - dmInt - The interpolated DM 124480330477SMatthew G. Knepley 124580330477SMatthew G. Knepley Output Parameter: 12464e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object 124780330477SMatthew G. Knepley 124880330477SMatthew G. Knepley Level: intermediate 124980330477SMatthew G. Knepley 125095452b02SPatrick Sanan Notes: 125195452b02SPatrick Sanan It does not copy over the coordinates. 125243eeeb2dSStefano Zampini 125343eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 125480330477SMatthew G. Knepley @*/ 12559f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt) 12569f074e33SMatthew G Knepley { 12579a5b13a2SMatthew G Knepley DM idm, odm = dm; 12587bffde78SMichael Lange PetscSF sfPoint; 12592e1b13c2SMatthew G. Knepley PetscInt depth, dim, d; 126010a67516SMatthew G. Knepley const char *name; 1261b325530aSVaclav Hapla PetscBool flg=PETSC_TRUE; 12629f074e33SMatthew G Knepley PetscErrorCode ierr; 12639f074e33SMatthew G Knepley 12649f074e33SMatthew G Knepley PetscFunctionBegin; 126510a67516SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 126610a67516SMatthew G. Knepley PetscValidPointer(dmInt, 2); 1267a72f3261SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 12682e1b13c2SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1269c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1270b21b8912SMatthew G. Knepley if ((depth == dim) || (dim <= 1)) { 127176b791aaSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 127276b791aaSMatthew G. Knepley idm = dm; 1273b21b8912SMatthew G. Knepley } else { 12749a5b13a2SMatthew G Knepley for (d = 1; d < dim; ++d) { 12759a5b13a2SMatthew G Knepley /* Create interpolated mesh */ 127610a67516SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr); 12779a5b13a2SMatthew G Knepley ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr); 1278c73cfb54SMatthew G. Knepley ierr = DMSetDimension(idm, dim);CHKERRQ(ierr); 12797bffde78SMichael Lange if (depth > 0) { 12807bffde78SMichael Lange ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr); 12817bffde78SMichael Lange ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr); 12822e72742cSMatthew G. Knepley ierr = DMPlexInterpolatePointSF(idm, sfPoint);CHKERRQ(ierr); 12837bffde78SMichael Lange } 12849a5b13a2SMatthew G Knepley if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);} 12859a5b13a2SMatthew G Knepley odm = idm; 12869f074e33SMatthew G Knepley } 128710a67516SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) dm, &name);CHKERRQ(ierr); 128810a67516SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) idm, name);CHKERRQ(ierr); 128910a67516SMatthew G. Knepley ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr); 12905d80c0bfSVaclav Hapla ierr = DMCopyLabels(dm, idm, PETSC_COPY_VALUES, PETSC_FALSE);CHKERRQ(ierr); 1291b325530aSVaclav Hapla ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr); 1292*27d0e99aSVaclav Hapla if (flg) {ierr = DMPlexOrientInterface_Internal(idm);CHKERRQ(ierr);} 129384699f70SSatish Balay } 129443eeeb2dSStefano Zampini { 129543eeeb2dSStefano Zampini PetscBool isper; 129643eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 129743eeeb2dSStefano Zampini const DMBoundaryType *bd; 129843eeeb2dSStefano Zampini 129943eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 130043eeeb2dSStefano Zampini ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr); 130143eeeb2dSStefano Zampini } 13029a5b13a2SMatthew G Knepley *dmInt = idm; 1303a72f3261SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 13049f074e33SMatthew G Knepley PetscFunctionReturn(0); 13059f074e33SMatthew G Knepley } 130607b0a1fcSMatthew G Knepley 130780330477SMatthew G. Knepley /*@ 130880330477SMatthew G. Knepley DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices 130980330477SMatthew G. Knepley 1310d083f849SBarry Smith Collective on dmA 131180330477SMatthew G. Knepley 131280330477SMatthew G. Knepley Input Parameter: 131380330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates 131480330477SMatthew G. Knepley 131580330477SMatthew G. Knepley Output Parameter: 131680330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates 131780330477SMatthew G. Knepley 131880330477SMatthew G. Knepley Level: intermediate 131980330477SMatthew G. Knepley 132080330477SMatthew G. Knepley Note: This is typically used when adding pieces other than vertices to a mesh 132180330477SMatthew G. Knepley 132265f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection() 132380330477SMatthew G. Knepley @*/ 132407b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB) 132507b0a1fcSMatthew G Knepley { 132607b0a1fcSMatthew G Knepley Vec coordinatesA, coordinatesB; 132743eeeb2dSStefano Zampini VecType vtype; 132807b0a1fcSMatthew G Knepley PetscSection coordSectionA, coordSectionB; 132907b0a1fcSMatthew G Knepley PetscScalar *coordsA, *coordsB; 13300bedd6beSMatthew G. Knepley PetscInt spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d; 133143eeeb2dSStefano Zampini PetscInt cStartA, cEndA, cStartB, cEndB, cS, cE; 133243eeeb2dSStefano Zampini PetscBool lc = PETSC_FALSE; 133307b0a1fcSMatthew G Knepley PetscErrorCode ierr; 133407b0a1fcSMatthew G Knepley 133507b0a1fcSMatthew G Knepley PetscFunctionBegin; 133643eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 133743eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 133876b791aaSMatthew G. Knepley if (dmA == dmB) PetscFunctionReturn(0); 133907b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr); 134007b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr); 134107b0a1fcSMatthew G Knepley if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB); 134243eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr); 134343eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr); 134469d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr); 134569d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr); 1346972bc18aSToby Isaac if (coordSectionA == coordSectionB) PetscFunctionReturn(0); 13470bedd6beSMatthew G. Knepley ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr); 13480bedd6beSMatthew G. Knepley if (!Nf) PetscFunctionReturn(0); 13490bedd6beSMatthew G. Knepley if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf); 1350df26b574SMatthew G. Knepley if (!coordSectionB) { 1351df26b574SMatthew G. Knepley PetscInt dim; 1352df26b574SMatthew G. Knepley 1353df26b574SMatthew G. Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr); 1354df26b574SMatthew G. Knepley ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr); 1355df26b574SMatthew G. Knepley ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr); 1356df26b574SMatthew G. Knepley ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr); 1357df26b574SMatthew G. Knepley } 135807b0a1fcSMatthew G Knepley ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr); 135907b0a1fcSMatthew G Knepley ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr); 136007b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr); 136143eeeb2dSStefano Zampini ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr); 136243eeeb2dSStefano Zampini if (cStartA <= cS && cS < cEndA) { /* localized coordinates */ 1363367003a6SStefano Zampini if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB); 136443eeeb2dSStefano Zampini cS = cS - cStartA + cStartB; 136543eeeb2dSStefano Zampini cE = vEndB; 136643eeeb2dSStefano Zampini lc = PETSC_TRUE; 136743eeeb2dSStefano Zampini } else { 136843eeeb2dSStefano Zampini cS = vStartB; 136943eeeb2dSStefano Zampini cE = vEndB; 137043eeeb2dSStefano Zampini } 137143eeeb2dSStefano Zampini ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr); 137207b0a1fcSMatthew G Knepley for (v = vStartB; v < vEndB; ++v) { 137307b0a1fcSMatthew G Knepley ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr); 137407b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr); 137507b0a1fcSMatthew G Knepley } 137643eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 137743eeeb2dSStefano Zampini PetscInt c; 137843eeeb2dSStefano Zampini 137943eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 138043eeeb2dSStefano Zampini PetscInt dof; 138143eeeb2dSStefano Zampini 138243eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 138343eeeb2dSStefano Zampini ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr); 138443eeeb2dSStefano Zampini ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr); 138543eeeb2dSStefano Zampini } 138643eeeb2dSStefano Zampini } 138707b0a1fcSMatthew G Knepley ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr); 138807b0a1fcSMatthew G Knepley ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr); 138907b0a1fcSMatthew G Knepley ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr); 13908b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr); 139107b0a1fcSMatthew G Knepley ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr); 139207b0a1fcSMatthew G Knepley ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr); 139343eeeb2dSStefano Zampini ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr); 139443eeeb2dSStefano Zampini ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr); 139543eeeb2dSStefano Zampini ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr); 139643eeeb2dSStefano Zampini ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr); 139707b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr); 139807b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr); 139907b0a1fcSMatthew G Knepley for (v = 0; v < vEndB-vStartB; ++v) { 140043eeeb2dSStefano Zampini PetscInt offA, offB; 140143eeeb2dSStefano Zampini 140243eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr); 140343eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr); 140407b0a1fcSMatthew G Knepley for (d = 0; d < spaceDim; ++d) { 140543eeeb2dSStefano Zampini coordsB[offB+d] = coordsA[offA+d]; 140643eeeb2dSStefano Zampini } 140743eeeb2dSStefano Zampini } 140843eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 140943eeeb2dSStefano Zampini PetscInt c; 141043eeeb2dSStefano Zampini 141143eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 141243eeeb2dSStefano Zampini PetscInt dof, offA, offB; 141343eeeb2dSStefano Zampini 141443eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr); 141543eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr); 141643eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 1417580bdb30SBarry Smith ierr = PetscArraycpy(coordsB + offB,coordsA + offA,dof);CHKERRQ(ierr); 141807b0a1fcSMatthew G Knepley } 141907b0a1fcSMatthew G Knepley } 142007b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr); 142107b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr); 142207b0a1fcSMatthew G Knepley ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr); 142307b0a1fcSMatthew G Knepley ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr); 142407b0a1fcSMatthew G Knepley PetscFunctionReturn(0); 142507b0a1fcSMatthew G Knepley } 14265c386225SMatthew G. Knepley 14274e3744c5SMatthew G. Knepley /*@ 14284e3744c5SMatthew G. Knepley DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh 14294e3744c5SMatthew G. Knepley 1430d083f849SBarry Smith Collective on dm 14314e3744c5SMatthew G. Knepley 14324e3744c5SMatthew G. Knepley Input Parameter: 14334e3744c5SMatthew G. Knepley . dm - The complete DMPlex object 14344e3744c5SMatthew G. Knepley 14354e3744c5SMatthew G. Knepley Output Parameter: 14364e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices 14374e3744c5SMatthew G. Knepley 14384e3744c5SMatthew G. Knepley Level: intermediate 14394e3744c5SMatthew G. Knepley 144095452b02SPatrick Sanan Notes: 144195452b02SPatrick Sanan It does not copy over the coordinates. 144243eeeb2dSStefano Zampini 144343eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 14444e3744c5SMatthew G. Knepley @*/ 14454e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint) 14464e3744c5SMatthew G. Knepley { 14474e3744c5SMatthew G. Knepley DM udm; 1448c9f63434SStefano Zampini PetscInt dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone; 14494e3744c5SMatthew G. Knepley PetscErrorCode ierr; 14504e3744c5SMatthew G. Knepley 14514e3744c5SMatthew G. Knepley PetscFunctionBegin; 145243eeeb2dSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 145343eeeb2dSStefano Zampini PetscValidPointer(dmUnint, 2); 1454c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 14554e3744c5SMatthew G. Knepley if (dim <= 1) { 14564e3744c5SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 1457595d4abbSMatthew G. Knepley *dmUnint = dm; 1458595d4abbSMatthew G. Knepley PetscFunctionReturn(0); 14594e3744c5SMatthew G. Knepley } 1460595d4abbSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1461595d4abbSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1462c9f63434SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 14634e3744c5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr); 14644e3744c5SMatthew G. Knepley ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr); 1465c73cfb54SMatthew G. Knepley ierr = DMSetDimension(udm, dim);CHKERRQ(ierr); 14664e3744c5SMatthew G. Knepley ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr); 14674e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1468595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 14694e3744c5SMatthew G. Knepley 14704e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14714e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 14724e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 14734e3744c5SMatthew G. Knepley 14744e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++coneSize; 14754e3744c5SMatthew G. Knepley } 14764e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14774e3744c5SMatthew G. Knepley ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr); 1478595d4abbSMatthew G. Knepley maxConeSize = PetscMax(maxConeSize, coneSize); 14794e3744c5SMatthew G. Knepley } 14804e3744c5SMatthew G. Knepley ierr = DMSetUp(udm);CHKERRQ(ierr); 1481785e854fSJed Brown ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr); 14824e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1483595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 14844e3744c5SMatthew G. Knepley 14854e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14864e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 14874e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 14884e3744c5SMatthew G. Knepley 14894e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p; 14904e3744c5SMatthew G. Knepley } 14914e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14924e3744c5SMatthew G. Knepley ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr); 14934e3744c5SMatthew G. Knepley } 14944e3744c5SMatthew G. Knepley ierr = PetscFree(cone);CHKERRQ(ierr); 1495c9f63434SStefano Zampini ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 14964e3744c5SMatthew G. Knepley ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr); 14974e3744c5SMatthew G. Knepley ierr = DMPlexStratify(udm);CHKERRQ(ierr); 14985c7de58aSMatthew G. Knepley /* Reduce SF */ 14995c7de58aSMatthew G. Knepley { 15005c7de58aSMatthew G. Knepley PetscSF sfPoint, sfPointUn; 15015c7de58aSMatthew G. Knepley const PetscSFNode *remotePoints; 15025c7de58aSMatthew G. Knepley const PetscInt *localPoints; 15035c7de58aSMatthew G. Knepley PetscSFNode *remotePointsUn; 15045c7de58aSMatthew G. Knepley PetscInt *localPointsUn; 15055c7de58aSMatthew G. Knepley PetscInt vEnd, numRoots, numLeaves, l; 15065c7de58aSMatthew G. Knepley PetscInt numLeavesUn = 0, n = 0; 15075c7de58aSMatthew G. Knepley PetscErrorCode ierr; 15085c7de58aSMatthew G. Knepley 15095c7de58aSMatthew G. Knepley /* Get original SF information */ 15105c7de58aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 15115c7de58aSMatthew G. Knepley ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr); 15125c7de58aSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr); 15135c7de58aSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 15145c7de58aSMatthew G. Knepley /* Allocate space for cells and vertices */ 15155c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++; 15165c7de58aSMatthew G. Knepley /* Fill in leaves */ 15175c7de58aSMatthew G. Knepley if (vEnd >= 0) { 15185c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr); 15195c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr); 15205c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; l++) { 15215c7de58aSMatthew G. Knepley if (localPoints[l] < vEnd) { 15225c7de58aSMatthew G. Knepley localPointsUn[n] = localPoints[l]; 15235c7de58aSMatthew G. Knepley remotePointsUn[n].rank = remotePoints[l].rank; 15245c7de58aSMatthew G. Knepley remotePointsUn[n].index = remotePoints[l].index; 15255c7de58aSMatthew G. Knepley ++n; 15265c7de58aSMatthew G. Knepley } 15275c7de58aSMatthew G. Knepley } 15285c7de58aSMatthew G. Knepley if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn); 15295c7de58aSMatthew G. Knepley ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr); 15305c7de58aSMatthew G. Knepley } 15315c7de58aSMatthew G. Knepley } 153243eeeb2dSStefano Zampini { 153343eeeb2dSStefano Zampini PetscBool isper; 153443eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 153543eeeb2dSStefano Zampini const DMBoundaryType *bd; 153643eeeb2dSStefano Zampini 153743eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 153843eeeb2dSStefano Zampini ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr); 153943eeeb2dSStefano Zampini } 154043eeeb2dSStefano Zampini 15414e3744c5SMatthew G. Knepley *dmUnint = udm; 15424e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 15434e3744c5SMatthew G. Knepley } 1544