xref: /petsc/src/dm/impls/plex/plexinterpolate.c (revision 367003a68d4e38a62ba2a0620cd4e6f42aa373fd)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h>
3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h>
4e8f14785SLisandro Dalcin 
5e8f14785SLisandro Dalcin /* HashIJKL */
6e8f14785SLisandro Dalcin 
7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h>
8e8f14785SLisandro Dalcin 
9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey;
10e8f14785SLisandro Dalcin 
11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \
12e8f14785SLisandro Dalcin   PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \
13e8f14785SLisandro Dalcin                    PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l)))
14e8f14785SLisandro Dalcin 
15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \
16e8f14785SLisandro Dalcin   (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0)
17e8f14785SLisandro Dalcin 
18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1)
19e8f14785SLisandro Dalcin 
209f074e33SMatthew G Knepley 
219f074e33SMatthew G Knepley /*
229a5b13a2SMatthew G Knepley   DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell
23cd921712SStefano Zampini   This assumes that the mesh is not interpolated from the depth of point p to the vertices
249f074e33SMatthew G Knepley */
25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
269f074e33SMatthew G Knepley {
279f074e33SMatthew G Knepley   const PetscInt *cone = NULL;
28cd921712SStefano Zampini   PetscInt        coneSize;
299f074e33SMatthew G Knepley   PetscErrorCode  ierr;
309f074e33SMatthew G Knepley 
319f074e33SMatthew G Knepley   PetscFunctionBegin;
329f074e33SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
339f074e33SMatthew G Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
349f074e33SMatthew G Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
35439ece16SMatthew G. Knepley   ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr);
36439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
37439ece16SMatthew G. Knepley }
38439ece16SMatthew G. Knepley 
39439ece16SMatthew G. Knepley /*
40439ece16SMatthew G. Knepley   DMPlexRestoreFaces_Internal - Restores the array
41439ece16SMatthew G. Knepley */
42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
43439ece16SMatthew G. Knepley {
44439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
45439ece16SMatthew G. Knepley 
46439ece16SMatthew G. Knepley   PetscFunctionBegin;
47cd921712SStefano Zampini   if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); }
48439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
49439ece16SMatthew G. Knepley }
50439ece16SMatthew G. Knepley 
51439ece16SMatthew G. Knepley /*
52439ece16SMatthew G. Knepley   DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone
53439ece16SMatthew G. Knepley */
54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
55439ece16SMatthew G. Knepley {
56439ece16SMatthew G. Knepley   PetscInt       *facesTmp;
57439ece16SMatthew G. Knepley   PetscInt        maxConeSize, maxSupportSize;
58439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
59439ece16SMatthew G. Knepley 
60439ece16SMatthew G. Knepley   PetscFunctionBegin;
61439ece16SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
62cd921712SStefano Zampini   if (faces && coneSize) PetscValidIntPointer(cone,4);
63439ece16SMatthew G. Knepley   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
6469291d52SBarry Smith   if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);}
659f074e33SMatthew G Knepley   switch (dim) {
66c49d9212SMatthew G. Knepley   case 1:
67c49d9212SMatthew G. Knepley     switch (coneSize) {
68c49d9212SMatthew G. Knepley     case 2:
69c49d9212SMatthew G. Knepley       if (faces) {
70c49d9212SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
71c49d9212SMatthew G. Knepley         *faces = facesTmp;
72c49d9212SMatthew G. Knepley       }
73c49d9212SMatthew G. Knepley       if (numFaces) *numFaces = 2;
74c49d9212SMatthew G. Knepley       if (faceSize) *faceSize = 1;
75c49d9212SMatthew G. Knepley       break;
76c49d9212SMatthew G. Knepley     default:
7799836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
78c49d9212SMatthew G. Knepley     }
79c49d9212SMatthew G. Knepley     break;
809f074e33SMatthew G Knepley   case 2:
819f074e33SMatthew G Knepley     switch (coneSize) {
829f074e33SMatthew G Knepley     case 3:
839a5b13a2SMatthew G Knepley       if (faces) {
849a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
859a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
869a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
879a5b13a2SMatthew G Knepley         *faces = facesTmp;
889a5b13a2SMatthew G Knepley       }
899a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 3;
909a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
919f074e33SMatthew G Knepley       break;
929f074e33SMatthew G Knepley     case 4:
939a5b13a2SMatthew G Knepley       /* Vertices follow right hand rule */
949a5b13a2SMatthew G Knepley       if (faces) {
959a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
969a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
979a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[3];
989a5b13a2SMatthew G Knepley         facesTmp[6] = cone[3]; facesTmp[7] = cone[0];
999a5b13a2SMatthew G Knepley         *faces = facesTmp;
1009a5b13a2SMatthew G Knepley       }
1019a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 4;
1029a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
1039f074e33SMatthew G Knepley       break;
1049f074e33SMatthew G Knepley     default:
10599836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
1069f074e33SMatthew G Knepley     }
1079f074e33SMatthew G Knepley     break;
1089f074e33SMatthew G Knepley   case 3:
1099f074e33SMatthew G Knepley     switch (coneSize) {
1109f074e33SMatthew G Knepley     case 3:
1119a5b13a2SMatthew G Knepley       if (faces) {
1129a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
1139a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
1149a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
1159a5b13a2SMatthew G Knepley         *faces = facesTmp;
1169a5b13a2SMatthew G Knepley       }
1179a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 3;
1189a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
1199f074e33SMatthew G Knepley       break;
1209f074e33SMatthew G Knepley     case 4:
1212e1b13c2SMatthew G. Knepley       /* Vertices of first face follow right hand rule and normal points away from last vertex */
1229a5b13a2SMatthew G Knepley       if (faces) {
1232e1b13c2SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2];
1242e1b13c2SMatthew G. Knepley         facesTmp[3] = cone[0]; facesTmp[4]  = cone[3]; facesTmp[5]  = cone[1];
1252e1b13c2SMatthew G. Knepley         facesTmp[6] = cone[0]; facesTmp[7]  = cone[2]; facesTmp[8]  = cone[3];
1262e1b13c2SMatthew G. Knepley         facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3];
1279a5b13a2SMatthew G Knepley         *faces = facesTmp;
1289a5b13a2SMatthew G Knepley       }
1299a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 4;
1309a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 3;
1319a5b13a2SMatthew G Knepley       break;
1329a5b13a2SMatthew G Knepley     case 8:
133e368ef20SMatthew G. Knepley       /*  7--------6
134e368ef20SMatthew G. Knepley          /|       /|
135e368ef20SMatthew G. Knepley         / |      / |
136e368ef20SMatthew G. Knepley        4--------5  |
137e368ef20SMatthew G. Knepley        |  |     |  |
138e368ef20SMatthew G. Knepley        |  |     |  |
139e368ef20SMatthew G. Knepley        |  1--------2
140e368ef20SMatthew G. Knepley        | /      | /
141e368ef20SMatthew G. Knepley        |/       |/
142e368ef20SMatthew G. Knepley        0--------3
143e368ef20SMatthew G. Knepley        */
1449a5b13a2SMatthew G Knepley       if (faces) {
14551cfd6a4SMatthew G. Knepley         facesTmp[0]  = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2]; facesTmp[3]  = cone[3]; /* Bottom */
14651cfd6a4SMatthew G. Knepley         facesTmp[4]  = cone[4]; facesTmp[5]  = cone[5]; facesTmp[6]  = cone[6]; facesTmp[7]  = cone[7]; /* Top */
14751cfd6a4SMatthew G. Knepley         facesTmp[8]  = cone[0]; facesTmp[9]  = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */
14851cfd6a4SMatthew G. Knepley         facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */
14951cfd6a4SMatthew G. Knepley         facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */
15051cfd6a4SMatthew G. Knepley         facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */
1519a5b13a2SMatthew G Knepley         *faces = facesTmp;
1529a5b13a2SMatthew G Knepley       }
1539a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 6;
1549a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 4;
1559f074e33SMatthew G Knepley       break;
1569f074e33SMatthew G Knepley     default:
15799836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
1589f074e33SMatthew G Knepley     }
1599f074e33SMatthew G Knepley     break;
1609f074e33SMatthew G Knepley   default:
16199836e0eSStefano Zampini     SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
1629f074e33SMatthew G Knepley   }
1639f074e33SMatthew G Knepley   PetscFunctionReturn(0);
1649f074e33SMatthew G Knepley }
1659f074e33SMatthew G Knepley 
16699836e0eSStefano Zampini /*
16799836e0eSStefano Zampini   DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms)
16899836e0eSStefano Zampini */
16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
17099836e0eSStefano Zampini {
17199836e0eSStefano Zampini   PetscInt       *facesTmp;
17299836e0eSStefano Zampini   PetscInt        maxConeSize, maxSupportSize;
17399836e0eSStefano Zampini   PetscErrorCode  ierr;
17499836e0eSStefano Zampini 
17599836e0eSStefano Zampini   PetscFunctionBegin;
17699836e0eSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17799836e0eSStefano Zampini   if (faces && coneSize) PetscValidIntPointer(cone,4);
17899836e0eSStefano Zampini   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
17999836e0eSStefano Zampini   if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);}
18099836e0eSStefano Zampini   switch (dim) {
18199836e0eSStefano Zampini   case 1:
18299836e0eSStefano Zampini     switch (coneSize) {
18399836e0eSStefano Zampini     case 2:
18499836e0eSStefano Zampini       if (faces) {
18599836e0eSStefano Zampini         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
18699836e0eSStefano Zampini         *faces = facesTmp;
18799836e0eSStefano Zampini       }
18899836e0eSStefano Zampini       if (numFaces)     *numFaces = 2;
18999836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
19099836e0eSStefano Zampini       if (faceSize)     *faceSize = 1;
19199836e0eSStefano Zampini       break;
19299836e0eSStefano Zampini     default:
19399836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
19499836e0eSStefano Zampini     }
19599836e0eSStefano Zampini     break;
19699836e0eSStefano Zampini   case 2:
19799836e0eSStefano Zampini     switch (coneSize) {
19899836e0eSStefano Zampini     case 4:
19999836e0eSStefano Zampini       if (faces) {
20099836e0eSStefano Zampini         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
20199836e0eSStefano Zampini         facesTmp[2] = cone[2]; facesTmp[3] = cone[3];
20299836e0eSStefano Zampini         facesTmp[4] = cone[0]; facesTmp[5] = cone[2];
20399836e0eSStefano Zampini         facesTmp[6] = cone[1]; facesTmp[7] = cone[3];
20499836e0eSStefano Zampini         *faces = facesTmp;
20599836e0eSStefano Zampini       }
20699836e0eSStefano Zampini       if (numFaces)     *numFaces = 4;
20799836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
20899836e0eSStefano Zampini       if (faceSize)     *faceSize = 2;
20999836e0eSStefano Zampini       break;
21099836e0eSStefano Zampini     default:
21199836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
21299836e0eSStefano Zampini     }
21399836e0eSStefano Zampini     break;
21499836e0eSStefano Zampini   case 3:
21599836e0eSStefano Zampini     switch (coneSize) {
21699836e0eSStefano Zampini     case 6: /* triangular prism */
21799836e0eSStefano Zampini       if (faces) {
21899836e0eSStefano Zampini         facesTmp[0]  = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2]; facesTmp[3]  = -1;      /* Bottom */
21999836e0eSStefano Zampini         facesTmp[4]  = cone[3]; facesTmp[5]  = cone[4]; facesTmp[6]  = cone[5]; facesTmp[7]  = -1;      /* Top */
22099836e0eSStefano Zampini         facesTmp[8]  = cone[0]; facesTmp[9]  = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */
22199836e0eSStefano Zampini         facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */
22299836e0eSStefano Zampini         facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */
22399836e0eSStefano Zampini         *faces = facesTmp;
22499836e0eSStefano Zampini       }
22599836e0eSStefano Zampini       if (numFaces)     *numFaces = 5;
22699836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
22799836e0eSStefano Zampini       if (faceSize)     *faceSize = -4;
22899836e0eSStefano Zampini       break;
22999836e0eSStefano Zampini     default:
23099836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
23199836e0eSStefano Zampini     }
23299836e0eSStefano Zampini     break;
23399836e0eSStefano Zampini   default:
23499836e0eSStefano Zampini     SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
23599836e0eSStefano Zampini   }
23699836e0eSStefano Zampini   PetscFunctionReturn(0);
23799836e0eSStefano Zampini }
23899836e0eSStefano Zampini 
23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
24099836e0eSStefano Zampini {
24199836e0eSStefano Zampini   PetscErrorCode  ierr;
24299836e0eSStefano Zampini 
24399836e0eSStefano Zampini   PetscFunctionBegin;
24499836e0eSStefano Zampini   if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); }
24599836e0eSStefano Zampini   PetscFunctionReturn(0);
24699836e0eSStefano Zampini }
24799836e0eSStefano Zampini 
24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
24999836e0eSStefano Zampini {
25099836e0eSStefano Zampini   const PetscInt *cone = NULL;
25199836e0eSStefano Zampini   PetscInt        coneSize;
25299836e0eSStefano Zampini   PetscErrorCode  ierr;
25399836e0eSStefano Zampini 
25499836e0eSStefano Zampini   PetscFunctionBegin;
25599836e0eSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25699836e0eSStefano Zampini   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
25799836e0eSStefano Zampini   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
25899836e0eSStefano Zampini   ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr);
25999836e0eSStefano Zampini   PetscFunctionReturn(0);
26099836e0eSStefano Zampini }
26199836e0eSStefano Zampini 
2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */
2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm)
2649f074e33SMatthew G Knepley {
265d4efc6f1SMatthew G. Knepley   DMLabel        subpointMap;
2669a5b13a2SMatthew G Knepley   PetscHashIJKL  faceTable;
2679a5b13a2SMatthew G Knepley   PetscInt      *pStart, *pEnd;
2689a5b13a2SMatthew G Knepley   PetscInt       cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d;
26999836e0eSStefano Zampini   PetscInt       coneSizeH = 0, faceSizeAllH = 0, numCellFacesH = 0, faceH, pMax = -1, dim, outerloop;
27099836e0eSStefano Zampini   PetscInt       cMax, fMax, eMax, vMax;
2719f074e33SMatthew G Knepley   PetscErrorCode ierr;
2729f074e33SMatthew G Knepley 
2739f074e33SMatthew G Knepley   PetscFunctionBegin;
274c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr);
275d4efc6f1SMatthew G. Knepley   /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */
276d4efc6f1SMatthew G. Knepley   ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr);
277d4efc6f1SMatthew G. Knepley   if (subpointMap) ++cellDim;
2789a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
2799a5b13a2SMatthew G Knepley   ++depth;
2809a5b13a2SMatthew G Knepley   ++cellDepth;
2819a5b13a2SMatthew G Knepley   cellDim -= depth - cellDepth;
282dcca6d9dSJed Brown   ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr);
2839a5b13a2SMatthew G Knepley   for (d = depth-1; d >= faceDepth; --d) {
2849a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr);
2859f074e33SMatthew G Knepley   }
2869a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr);
2879a5b13a2SMatthew G Knepley   pEnd[faceDepth] = pStart[faceDepth];
2889a5b13a2SMatthew G Knepley   for (d = faceDepth-1; d >= 0; --d) {
2899a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);
2909f074e33SMatthew G Knepley   }
29199836e0eSStefano Zampini   cMax = fMax = eMax = vMax = PETSC_DETERMINE;
29299836e0eSStefano Zampini   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
29399836e0eSStefano Zampini   if (cellDim == dim) {
29499836e0eSStefano Zampini     ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr);
29599836e0eSStefano Zampini     pMax = cMax;
29699836e0eSStefano Zampini   } else if (cellDim == dim -1) {
29799836e0eSStefano Zampini     ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr);
29899836e0eSStefano Zampini     pMax = fMax;
29999836e0eSStefano Zampini   }
30099836e0eSStefano Zampini   pMax = pMax < 0 ? pEnd[cellDepth] : pMax;
30199836e0eSStefano Zampini   if (pMax < pEnd[cellDepth]) {
30299836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
30399836e0eSStefano Zampini     PetscInt        numCellFacesT, faceSize, cf;
3049f074e33SMatthew G Knepley 
30599836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr);
30699836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr);
30799836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr);
30899836e0eSStefano Zampini     if (faceSize < 0) {
30999836e0eSStefano Zampini       PetscInt *sizes, minv, maxv;
31099836e0eSStefano Zampini 
31199836e0eSStefano Zampini       /* count vertices of hybrid and non-hybrid faces */
31299836e0eSStefano Zampini       ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr);
31399836e0eSStefano Zampini       for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */
31499836e0eSStefano Zampini         const PetscInt *cellFace = &cellFaces[-cf*faceSize];
31599836e0eSStefano Zampini         PetscInt       f;
31699836e0eSStefano Zampini 
31799836e0eSStefano Zampini         for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0);
31899836e0eSStefano Zampini       }
31999836e0eSStefano Zampini       ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr);
32099836e0eSStefano Zampini       minv = sizes[0];
32199836e0eSStefano Zampini       maxv = sizes[PetscMax(numCellFacesT-1, 0)];
32299836e0eSStefano Zampini       if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv);
32399836e0eSStefano Zampini       faceSizeAll = minv;
32499836e0eSStefano Zampini       ierr = PetscMemzero(sizes, numCellFacesH*sizeof(PetscInt));CHKERRQ(ierr);
32599836e0eSStefano Zampini       for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */
32699836e0eSStefano Zampini         const PetscInt *cellFace = &cellFaces[-cf*faceSize];
32799836e0eSStefano Zampini         PetscInt       f;
32899836e0eSStefano Zampini 
32999836e0eSStefano Zampini         for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0);
33099836e0eSStefano Zampini       }
33199836e0eSStefano Zampini       ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr);
33299836e0eSStefano Zampini       minv = sizes[0];
33399836e0eSStefano Zampini       maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)];
33499836e0eSStefano Zampini       ierr = PetscFree(sizes);CHKERRQ(ierr);
33599836e0eSStefano Zampini       if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv);
33699836e0eSStefano Zampini       faceSizeAllH = minv;
33799836e0eSStefano Zampini     } else { /* the size of the faces in hybrid cells is the same */
33899836e0eSStefano Zampini       faceSizeAll = faceSizeAllH = faceSize;
33999836e0eSStefano Zampini     }
34099836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr);
34199836e0eSStefano Zampini   } else if (pEnd[cellDepth] > pStart[cellDepth]) {
34299836e0eSStefano Zampini     ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);
34399836e0eSStefano Zampini   }
34499836e0eSStefano Zampini   if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
34599836e0eSStefano Zampini 
34699836e0eSStefano Zampini   /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid grids
34799836e0eSStefano Zampini      Then, faces for non-hybrid cells are numbered.
34899836e0eSStefano Zampini      This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */
34999836e0eSStefano Zampini   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
35099836e0eSStefano Zampini   for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) {
35199836e0eSStefano Zampini     PetscInt start, end;
35299836e0eSStefano Zampini 
35399836e0eSStefano Zampini     start = outerloop == 0 ? pMax : pStart[cellDepth];
35499836e0eSStefano Zampini     end = outerloop == 0 ? pEnd[cellDepth] : pMax;
35599836e0eSStefano Zampini     for (c = start; c < end; ++c) {
35699836e0eSStefano Zampini       const PetscInt *cellFaces;
35799836e0eSStefano Zampini       PetscInt        numCellFaces, faceSize, faceSizeInc, cf;
35899836e0eSStefano Zampini 
35999836e0eSStefano Zampini       if (c < pMax) {
3609a5b13a2SMatthew G Knepley         ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
3619a5b13a2SMatthew G Knepley         if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
36299836e0eSStefano Zampini       } else { /* Hybrid cell */
36399836e0eSStefano Zampini         const PetscInt *cone;
36499836e0eSStefano Zampini         PetscInt        numCellFacesN, coneSize;
36599836e0eSStefano Zampini 
36699836e0eSStefano Zampini         ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
36799836e0eSStefano Zampini         if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH);
36899836e0eSStefano Zampini         ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
36999836e0eSStefano Zampini         ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
37099836e0eSStefano Zampini         if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c);
37199836e0eSStefano Zampini         faceSize = PetscMax(faceSize, -faceSize);
37299836e0eSStefano Zampini         if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize);
37399836e0eSStefano Zampini         numCellFaces = numCellFacesN; /* process only non-hybrid faces */
37499836e0eSStefano Zampini       }
37599836e0eSStefano Zampini       faceSizeInc = faceSize;
3769f074e33SMatthew G Knepley       for (cf = 0; cf < numCellFaces; ++cf) {
37799836e0eSStefano Zampini         const PetscInt   *cellFace = &cellFaces[cf*faceSizeInc];
37899836e0eSStefano Zampini         PetscInt          faceSizeH = faceSize;
3799a5b13a2SMatthew G Knepley         PetscHashIJKLKey  key;
380e8f14785SLisandro Dalcin         PetscHashIter     iter;
381e8f14785SLisandro Dalcin         PetscBool         missing;
3829f074e33SMatthew G Knepley 
38399836e0eSStefano Zampini         if (faceSizeInc == 2) {
3849a5b13a2SMatthew G Knepley           key.i = PetscMin(cellFace[0], cellFace[1]);
3859a5b13a2SMatthew G Knepley           key.j = PetscMax(cellFace[0], cellFace[1]);
38699836e0eSStefano Zampini           key.k = PETSC_MAX_INT;
38799836e0eSStefano Zampini           key.l = PETSC_MAX_INT;
3889a5b13a2SMatthew G Knepley         } else {
38999836e0eSStefano Zampini           key.i = cellFace[0];
39099836e0eSStefano Zampini           key.j = cellFace[1];
39199836e0eSStefano Zampini           key.k = cellFace[2];
39299836e0eSStefano Zampini           key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
393302440fdSBarry Smith           ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
3949f074e33SMatthew G Knepley         }
39599836e0eSStefano Zampini         /* this check is redundant for non-hybrid meshes */
39699836e0eSStefano Zampini         if (faceSizeH != faceSizeAll) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAll);
397e8f14785SLisandro Dalcin         ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
398e8f14785SLisandro Dalcin         if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);}
3999a5b13a2SMatthew G Knepley       }
40099836e0eSStefano Zampini       if (c < pMax) {
401439ece16SMatthew G. Knepley         ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
40299836e0eSStefano Zampini       } else {
40399836e0eSStefano Zampini         ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr);
40499836e0eSStefano Zampini       }
40599836e0eSStefano Zampini     }
40699836e0eSStefano Zampini   }
40799836e0eSStefano Zampini   pEnd[faceDepth] = face;
40899836e0eSStefano Zampini 
40999836e0eSStefano Zampini   /* Second pass for hybrid meshes: number hybrid faces */
41099836e0eSStefano Zampini   for (c = pMax; c < pEnd[cellDepth]; ++c) {
41199836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
41299836e0eSStefano Zampini     PetscInt        numCellFaces, numCellFacesN, faceSize, cf, coneSize;
41399836e0eSStefano Zampini 
41499836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
41599836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
41699836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
41799836e0eSStefano Zampini     if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH);
41899836e0eSStefano Zampini     faceSize = PetscMax(faceSize, -faceSize);
41999836e0eSStefano Zampini     for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */
42099836e0eSStefano Zampini       const PetscInt   *cellFace = &cellFaces[cf*faceSize];
42199836e0eSStefano Zampini       PetscHashIJKLKey  key;
42299836e0eSStefano Zampini       PetscHashIter     iter;
42399836e0eSStefano Zampini       PetscBool         missing;
42499836e0eSStefano Zampini       PetscInt          faceSizeH = faceSize;
42599836e0eSStefano Zampini 
42699836e0eSStefano Zampini       if (faceSize == 2) {
42799836e0eSStefano Zampini         key.i = PetscMin(cellFace[0], cellFace[1]);
42899836e0eSStefano Zampini         key.j = PetscMax(cellFace[0], cellFace[1]);
42999836e0eSStefano Zampini         key.k = PETSC_MAX_INT;
43099836e0eSStefano Zampini         key.l = PETSC_MAX_INT;
43199836e0eSStefano Zampini       } else {
43299836e0eSStefano Zampini         key.i = cellFace[0];
43399836e0eSStefano Zampini         key.j = cellFace[1];
43499836e0eSStefano Zampini         key.k = cellFace[2];
43599836e0eSStefano Zampini         key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
43699836e0eSStefano Zampini         ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
43799836e0eSStefano Zampini       }
43899836e0eSStefano Zampini       if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH);
43999836e0eSStefano Zampini       ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
44099836e0eSStefano Zampini       if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);}
44199836e0eSStefano Zampini     }
44299836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
44399836e0eSStefano Zampini   }
44499836e0eSStefano Zampini   faceH = face - pEnd[faceDepth];
44599836e0eSStefano Zampini   if (faceH) {
44699836e0eSStefano Zampini     if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth];
44799836e0eSStefano Zampini     else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth];
44899836e0eSStefano Zampini     else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim);
4499a5b13a2SMatthew G Knepley   }
4509a5b13a2SMatthew G Knepley   pEnd[faceDepth] = face;
4519a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
4529a5b13a2SMatthew G Knepley   /* Count new points */
4539a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
4549a5b13a2SMatthew G Knepley     numPoints += pEnd[d]-pStart[d];
4559a5b13a2SMatthew G Knepley   }
4569a5b13a2SMatthew G Knepley   ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr);
4579a5b13a2SMatthew G Knepley   /* Set cone sizes */
4589a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
4599a5b13a2SMatthew G Knepley     PetscInt coneSize, p;
4609f074e33SMatthew G Knepley 
4619a5b13a2SMatthew G Knepley     if (d == faceDepth) {
4629a5b13a2SMatthew G Knepley       /* I see no way to do this if we admit faces of different shapes */
46399836e0eSStefano Zampini       for (p = pStart[d]; p < pEnd[d]-faceH; ++p) {
4649a5b13a2SMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr);
4659a5b13a2SMatthew G Knepley       }
46699836e0eSStefano Zampini       for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) {
46799836e0eSStefano Zampini         ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr);
46899836e0eSStefano Zampini       }
469a014044eSMatthew G Knepley     } else if (d == cellDepth) {
470a014044eSMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
471a014044eSMatthew G Knepley         /* Number of cell faces may be different from number of cell vertices*/
47299836e0eSStefano Zampini         if (p < pMax) {
473a014044eSMatthew G Knepley           ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr);
47499836e0eSStefano Zampini         } else {
47599836e0eSStefano Zampini           ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr);
47699836e0eSStefano Zampini         }
477a014044eSMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
478a014044eSMatthew G Knepley       }
4799a5b13a2SMatthew G Knepley     } else {
4809a5b13a2SMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
4819a5b13a2SMatthew G Knepley         ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
4829a5b13a2SMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
4839f074e33SMatthew G Knepley       }
4849f074e33SMatthew G Knepley     }
4859f074e33SMatthew G Knepley   }
4869f074e33SMatthew G Knepley   ierr = DMSetUp(idm);CHKERRQ(ierr);
4879f074e33SMatthew G Knepley   /* Get face cones from subsets of cell vertices */
48899836e0eSStefano Zampini   if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
4899a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
4909a5b13a2SMatthew G Knepley   for (d = depth; d > cellDepth; --d) {
4919a5b13a2SMatthew G Knepley     const PetscInt *cone;
4929a5b13a2SMatthew G Knepley     PetscInt        p;
4939a5b13a2SMatthew G Knepley 
4949a5b13a2SMatthew G Knepley     for (p = pStart[d]; p < pEnd[d]; ++p) {
4959a5b13a2SMatthew G Knepley       ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
4969a5b13a2SMatthew G Knepley       ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr);
4979a5b13a2SMatthew G Knepley       ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr);
4989a5b13a2SMatthew G Knepley       ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr);
4999f074e33SMatthew G Knepley     }
5009a5b13a2SMatthew G Knepley   }
50199836e0eSStefano Zampini   for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) {
50299836e0eSStefano Zampini     PetscInt start, end;
5039f074e33SMatthew G Knepley 
50499836e0eSStefano Zampini     start = outerloop == 0 ? pMax : pStart[cellDepth];
50599836e0eSStefano Zampini     end = outerloop == 0 ? pEnd[cellDepth] : pMax;
50699836e0eSStefano Zampini     for (c = start; c < end; ++c) {
50799836e0eSStefano Zampini       const PetscInt *cellFaces;
50899836e0eSStefano Zampini       PetscInt        numCellFaces, faceSize, faceSizeInc, cf;
50999836e0eSStefano Zampini 
51099836e0eSStefano Zampini       if (c < pMax) {
5119a5b13a2SMatthew G Knepley         ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
5129a5b13a2SMatthew G Knepley         if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
51399836e0eSStefano Zampini       } else {
51499836e0eSStefano Zampini         const PetscInt *cone;
51599836e0eSStefano Zampini         PetscInt        numCellFacesN, coneSize;
51699836e0eSStefano Zampini 
51799836e0eSStefano Zampini         ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
51899836e0eSStefano Zampini         if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH);
51999836e0eSStefano Zampini         ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
52099836e0eSStefano Zampini         ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
52199836e0eSStefano Zampini         if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c);
52299836e0eSStefano Zampini         faceSize = PetscMax(faceSize, -faceSize);
52399836e0eSStefano Zampini         if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize);
52499836e0eSStefano Zampini         numCellFaces = numCellFacesN; /* process only non-hybrid faces */
52599836e0eSStefano Zampini       }
52699836e0eSStefano Zampini       faceSizeInc = faceSize;
5279f074e33SMatthew G Knepley       for (cf = 0; cf < numCellFaces; ++cf) {
52899836e0eSStefano Zampini         const PetscInt  *cellFace = &cellFaces[cf*faceSizeInc];
5299a5b13a2SMatthew G Knepley         PetscHashIJKLKey key;
530e8f14785SLisandro Dalcin         PetscHashIter    iter;
531e8f14785SLisandro Dalcin         PetscBool        missing;
5329f074e33SMatthew G Knepley 
53399836e0eSStefano Zampini         if (faceSizeInc == 2) {
5349a5b13a2SMatthew G Knepley           key.i = PetscMin(cellFace[0], cellFace[1]);
5359a5b13a2SMatthew G Knepley           key.j = PetscMax(cellFace[0], cellFace[1]);
53699836e0eSStefano Zampini           key.k = PETSC_MAX_INT;
53799836e0eSStefano Zampini           key.l = PETSC_MAX_INT;
5389a5b13a2SMatthew G Knepley         } else {
539e8f14785SLisandro Dalcin           key.i = cellFace[0];
540e8f14785SLisandro Dalcin           key.j = cellFace[1];
541e8f14785SLisandro Dalcin           key.k = cellFace[2];
54299836e0eSStefano Zampini           key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
54399836e0eSStefano Zampini           ierr  = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr);
5449f074e33SMatthew G Knepley         }
545e8f14785SLisandro Dalcin         ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
546735a0255SMatthew G. Knepley         if (missing) {
5479a5b13a2SMatthew G Knepley           ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr);
548e8f14785SLisandro Dalcin           ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr);
549735a0255SMatthew G. Knepley           ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr);
5509a5b13a2SMatthew G Knepley         } else {
5519a5b13a2SMatthew G Knepley           const PetscInt *cone;
552735a0255SMatthew G. Knepley           PetscInt        coneSize, ornt, i, j, f;
5539f074e33SMatthew G Knepley 
554e8f14785SLisandro Dalcin           ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr);
5559a5b13a2SMatthew G Knepley           ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
5562e1b13c2SMatthew G. Knepley           /* Orient face: Do not allow reverse orientation at the first vertex */
5579f074e33SMatthew G Knepley           ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr);
5589f074e33SMatthew G Knepley           ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr);
5599a5b13a2SMatthew G Knepley           if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize);
5609a5b13a2SMatthew G Knepley           /* - First find the initial vertex */
5619a5b13a2SMatthew G Knepley           for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break;
5629a5b13a2SMatthew G Knepley           /* - Try forward comparison */
5639a5b13a2SMatthew G Knepley           for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break;
5649a5b13a2SMatthew G Knepley           if (j == faceSize) {
5659a5b13a2SMatthew G Knepley             if ((faceSize == 2) && (i == 1)) ornt = -2;
5669a5b13a2SMatthew G Knepley             else                             ornt = i;
5679a5b13a2SMatthew G Knepley           } else {
5689a5b13a2SMatthew G Knepley             /* - Try backward comparison */
5699a5b13a2SMatthew G Knepley             for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break;
5702e1b13c2SMatthew G. Knepley             if (j == faceSize) {
5712e1b13c2SMatthew G. Knepley               if (i == 0) ornt = -faceSize;
572dc1a705cSMatthew G. Knepley               else        ornt = -i;
5732e1b13c2SMatthew G. Knepley             } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation");
5749a5b13a2SMatthew G Knepley           }
5759a5b13a2SMatthew G Knepley           ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr);
5769f074e33SMatthew G Knepley         }
5779f074e33SMatthew G Knepley       }
57899836e0eSStefano Zampini       if (c < pMax) {
579439ece16SMatthew G. Knepley         ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
58099836e0eSStefano Zampini       } else {
58199836e0eSStefano Zampini         ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr);
5829f074e33SMatthew G Knepley       }
58399836e0eSStefano Zampini     }
58499836e0eSStefano Zampini   }
58599836e0eSStefano Zampini   /* Second pass for hybrid meshes: orient hybrid faces */
58699836e0eSStefano Zampini   for (c = pMax; c < pEnd[cellDepth]; ++c) {
58799836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
58899836e0eSStefano Zampini     PetscInt        numCellFaces, numCellFacesN, faceSize, cf, coneSize;
58999836e0eSStefano Zampini 
59099836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
59199836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
59299836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
59399836e0eSStefano Zampini     if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH);
59499836e0eSStefano Zampini     faceSize = PetscMax(faceSize, -faceSize);
59599836e0eSStefano Zampini     for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */
59699836e0eSStefano Zampini       const PetscInt   *cellFace = &cellFaces[cf*faceSize];
59799836e0eSStefano Zampini       PetscHashIJKLKey key;
59899836e0eSStefano Zampini       PetscHashIter    iter;
59999836e0eSStefano Zampini       PetscBool        missing;
60099836e0eSStefano Zampini       PetscInt         faceSizeH = faceSize;
60199836e0eSStefano Zampini 
60299836e0eSStefano Zampini       if (faceSize == 2) {
60399836e0eSStefano Zampini         key.i = PetscMin(cellFace[0], cellFace[1]);
60499836e0eSStefano Zampini         key.j = PetscMax(cellFace[0], cellFace[1]);
60599836e0eSStefano Zampini         key.k = PETSC_MAX_INT;
60699836e0eSStefano Zampini         key.l = PETSC_MAX_INT;
60799836e0eSStefano Zampini       } else {
60899836e0eSStefano Zampini         key.i = cellFace[0];
60999836e0eSStefano Zampini         key.j = cellFace[1];
61099836e0eSStefano Zampini         key.k = cellFace[2];
61199836e0eSStefano Zampini         key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
61299836e0eSStefano Zampini         ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
61399836e0eSStefano Zampini       }
61499836e0eSStefano Zampini       if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH);
61599836e0eSStefano Zampini       ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
61699836e0eSStefano Zampini       if (missing) {
61799836e0eSStefano Zampini         ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr);
61899836e0eSStefano Zampini         ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr);
61999836e0eSStefano Zampini         ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr);
62099836e0eSStefano Zampini       } else {
62199836e0eSStefano Zampini         const PetscInt *cone;
62299836e0eSStefano Zampini         PetscInt        coneSize, ornt, i, j, f;
62399836e0eSStefano Zampini 
62499836e0eSStefano Zampini         ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr);
62599836e0eSStefano Zampini         ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
62699836e0eSStefano Zampini         /* Orient face: Do not allow reverse orientation at the first vertex */
62799836e0eSStefano Zampini         ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr);
62899836e0eSStefano Zampini         ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr);
62999836e0eSStefano Zampini         if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH);
63099836e0eSStefano Zampini         /* - First find the initial vertex */
63199836e0eSStefano Zampini         for (i = 0; i < faceSizeH; ++i) if (cellFace[0] == cone[i]) break;
63299836e0eSStefano Zampini         /* - Try forward comparison */
63399836e0eSStefano Zampini         for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+j)%faceSizeH]) break;
63499836e0eSStefano Zampini         if (j == faceSizeH) {
63599836e0eSStefano Zampini           if ((faceSizeH == 2) && (i == 1)) ornt = -2;
63699836e0eSStefano Zampini           else                             ornt = i;
63799836e0eSStefano Zampini         } else {
63899836e0eSStefano Zampini           /* - Try backward comparison */
63999836e0eSStefano Zampini           for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+faceSizeH-j)%faceSizeH]) break;
64099836e0eSStefano Zampini           if (j == faceSizeH) {
64199836e0eSStefano Zampini             if (i == 0) ornt = -faceSizeH;
64299836e0eSStefano Zampini             else        ornt = -i;
64399836e0eSStefano Zampini           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation");
64499836e0eSStefano Zampini         }
64599836e0eSStefano Zampini         ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr);
64699836e0eSStefano Zampini       }
64799836e0eSStefano Zampini     }
64899836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
64999836e0eSStefano Zampini   }
65099836e0eSStefano Zampini   if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]);
651c907b753SJed Brown   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
6529a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
6536551a8c7SMatthew G. Knepley   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
65499836e0eSStefano Zampini   ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr);
6559a5b13a2SMatthew G Knepley   ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr);
6569a5b13a2SMatthew G Knepley   ierr = DMPlexStratify(idm);CHKERRQ(ierr);
6579f074e33SMatthew G Knepley   PetscFunctionReturn(0);
6589f074e33SMatthew G Knepley }
6599f074e33SMatthew G Knepley 
660fa01033eSVaclav Hapla PetscErrorCode DMPlexOrientCell(DM dm, PetscInt p, PetscInt masterConeSize, const PetscInt masterCone[])
661fa01033eSVaclav Hapla {
66267aa0e3dSVaclav Hapla   PetscInt coneSize;
66367aa0e3dSVaclav Hapla   PetscInt start1=0;
66467aa0e3dSVaclav Hapla   PetscBool reverse1=PETSC_FALSE;
665a0d42dbcSVaclav Hapla   const PetscInt *cone=NULL;
666b8e38d09SVaclav Hapla   PetscErrorCode ierr;
667b8e38d09SVaclav Hapla 
668b8e38d09SVaclav Hapla   PetscFunctionBegin;
669b8e38d09SVaclav Hapla   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
670b8e38d09SVaclav Hapla   if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */
671b8e38d09SVaclav Hapla   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
672b8e38d09SVaclav Hapla   ierr = DMPlexFixFaceOrientations_Orient_Private(coneSize, masterConeSize, masterCone, cone, &start1, &reverse1);CHKERRQ(ierr);
673b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG)
674b8e38d09SVaclav Hapla   if (PetscUnlikely(cone[start1] != masterCone[0])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[0]", start1, cone[start1], masterCone[0]);
675b8e38d09SVaclav Hapla #endif
676b8e38d09SVaclav Hapla   ierr = DMPlexOrientCell_Internal(dm, p, start1, reverse1);CHKERRQ(ierr);
677b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG)
67867aa0e3dSVaclav Hapla   {
67967aa0e3dSVaclav Hapla     PetscInt c;
680b8e38d09SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
681b8e38d09SVaclav Hapla     for (c = 0; c < 2; c++) {
682b8e38d09SVaclav Hapla       if (PetscUnlikely(cone[c] != masterCone[c])) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[%d]", c, cone[c], masterCone[c], c);
683b8e38d09SVaclav Hapla     }
68467aa0e3dSVaclav Hapla   }
685b8e38d09SVaclav Hapla #endif
686b8e38d09SVaclav Hapla   PetscFunctionReturn(0);
687b8e38d09SVaclav Hapla }
688b8e38d09SVaclav Hapla 
6890fe46fbbSVaclav Hapla PetscErrorCode DMPlexOrientCell_Internal(DM dm, PetscInt p, PetscInt start1, PetscBool reverse1)
690b8e38d09SVaclav Hapla {
691fa01033eSVaclav Hapla   PetscInt i, j, k, maxConeSize, coneSize, coneConeSize, supportSize, supportConeSize;
692b8e38d09SVaclav Hapla   PetscInt start0, start;
693b8e38d09SVaclav Hapla   PetscBool reverse0, reverse;
694fa01033eSVaclav Hapla   PetscInt newornt;
695a0d42dbcSVaclav Hapla   const PetscInt *cone=NULL, *support=NULL, *supportCone=NULL, *ornts=NULL;
696a0d42dbcSVaclav Hapla   PetscInt *newcone=NULL, *newornts=NULL;
697fa01033eSVaclav Hapla   PetscErrorCode ierr;
698fa01033eSVaclav Hapla 
699fa01033eSVaclav Hapla   PetscFunctionBegin;
700b8e38d09SVaclav Hapla   if (!start1 && !reverse1) PetscFunctionReturn(0);
701fa01033eSVaclav Hapla   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
702fa01033eSVaclav Hapla   if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */
703fa01033eSVaclav Hapla   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
704b8e38d09SVaclav Hapla   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr);
705fa01033eSVaclav Hapla   /* permute p's cone and orientations */
706fa01033eSVaclav Hapla   ierr = DMPlexGetConeOrientation(dm, p, &ornts);CHKERRQ(ierr);
707fa01033eSVaclav Hapla   ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr);
708fa01033eSVaclav Hapla   ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr);
709fa01033eSVaclav Hapla   ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, cone, start1, reverse1, newcone);CHKERRQ(ierr);
710fa01033eSVaclav Hapla   ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, ornts, start1, reverse1, newornts);CHKERRQ(ierr);
711fa01033eSVaclav Hapla   /* if direction of p (face) is flipped, flip also p's cone points (edges) */
712fa01033eSVaclav Hapla   if (reverse1) {
713fa01033eSVaclav Hapla     for (i=0; i<coneSize; i++) {
714fa01033eSVaclav Hapla       ierr = DMPlexGetConeSize(dm, cone[i], &coneConeSize);CHKERRQ(ierr);
715fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Translate_Private(newornts[i], &start0, &reverse0);CHKERRQ(ierr);
716fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Combine_Private(coneConeSize, start0, reverse0, 1, PETSC_FALSE, &start, &reverse);CHKERRQ(ierr);
717fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneConeSize, start, reverse, &newornts[i]);CHKERRQ(ierr);
718fa01033eSVaclav Hapla     }
719fa01033eSVaclav Hapla   }
720fa01033eSVaclav Hapla   ierr = DMPlexSetConeOrientation(dm, p, newornts);CHKERRQ(ierr);
721fa01033eSVaclav Hapla   /* fix oriention of p within cones of p's support points */
722fa01033eSVaclav Hapla   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
723fa01033eSVaclav Hapla   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
724fa01033eSVaclav Hapla   for (j=0; j<supportSize; j++) {
725fa01033eSVaclav Hapla     ierr = DMPlexGetCone(dm, support[j], &supportCone);CHKERRQ(ierr);
726fa01033eSVaclav Hapla     ierr = DMPlexGetConeSize(dm, support[j], &supportConeSize);CHKERRQ(ierr);
727fa01033eSVaclav Hapla     ierr = DMPlexGetConeOrientation(dm, support[j], &ornts);CHKERRQ(ierr);
728fa01033eSVaclav Hapla     for (k=0; k<supportConeSize; k++) {
729fa01033eSVaclav Hapla       if (supportCone[k] != p) continue;
730fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Translate_Private(ornts[k], &start0, &reverse0);CHKERRQ(ierr);
731fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Combine_Private(coneSize, start0, reverse0, start1, reverse1, &start, &reverse);CHKERRQ(ierr);
732fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneSize, start, reverse, &newornt);CHKERRQ(ierr);
733fa01033eSVaclav Hapla       ierr = DMPlexInsertConeOrientation(dm, support[j], k, newornt);CHKERRQ(ierr);
734fa01033eSVaclav Hapla     }
735fa01033eSVaclav Hapla   }
736fa01033eSVaclav Hapla   /* rewrite cone */
737fa01033eSVaclav Hapla   ierr = DMPlexSetCone(dm, p, newcone);CHKERRQ(ierr);
738fa01033eSVaclav Hapla   ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr);
739fa01033eSVaclav Hapla   ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr);
740fa01033eSVaclav Hapla   PetscFunctionReturn(0);
741fa01033eSVaclav Hapla }
742fa01033eSVaclav Hapla 
743f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[])
744f80536cbSVaclav Hapla {
745f80536cbSVaclav Hapla   PetscInt            nleaves;
746f80536cbSVaclav Hapla   PetscInt            nranks;
747a0d42dbcSVaclav Hapla   const PetscMPIInt  *ranks=NULL;
748a0d42dbcSVaclav Hapla   const PetscInt     *roffset=NULL, *rmine=NULL, *rremote=NULL;
749f80536cbSVaclav Hapla   PetscInt            n, o, r;
750f80536cbSVaclav Hapla   PetscErrorCode      ierr;
751f80536cbSVaclav Hapla 
752f80536cbSVaclav Hapla   PetscFunctionBegin;
753f80536cbSVaclav Hapla   ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr);
754f80536cbSVaclav Hapla   nleaves = roffset[nranks];
755f80536cbSVaclav Hapla   ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr);
756f80536cbSVaclav Hapla   for (r=0; r<nranks; r++) {
757f80536cbSVaclav Hapla     /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote
758f80536cbSVaclav Hapla        - to unify order with the other side */
759f80536cbSVaclav Hapla     o = roffset[r];
760f80536cbSVaclav Hapla     n = roffset[r+1] - o;
761f80536cbSVaclav Hapla     ierr = PetscMemcpy(&(*rmine1)[o], &rmine[o], n*sizeof(PetscInt));CHKERRQ(ierr);
762f80536cbSVaclav Hapla     ierr = PetscMemcpy(&(*rremote1)[o], &rremote[o], n*sizeof(PetscInt));CHKERRQ(ierr);
763f80536cbSVaclav Hapla     ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr);
764f80536cbSVaclav Hapla   }
765f80536cbSVaclav Hapla   PetscFunctionReturn(0);
766f80536cbSVaclav Hapla }
767f80536cbSVaclav Hapla 
768bba29ab8SVaclav Hapla PetscErrorCode DMPlexOrientInterface(DM dm)
7692e745bdaSMatthew G. Knepley {
770a0d42dbcSVaclav Hapla   PetscSF           sf=NULL;
771cae7fe92SVaclav Hapla   PetscInt          (*roots)[2], (*leaves)[2];
7728a650c75SVaclav Hapla   PetscMPIInt       (*rootsRanks)[2], (*leavesRanks)[2];
773a0d42dbcSVaclav Hapla   const PetscInt    *locals=NULL;
774a0d42dbcSVaclav Hapla   const PetscSFNode *remotes=NULL;
7758a650c75SVaclav Hapla   PetscInt           nroots, nleaves, p, c;
776f80536cbSVaclav Hapla   PetscInt           nranks, n, o, r;
777a0d42dbcSVaclav Hapla   const PetscMPIInt *ranks=NULL;
778a0d42dbcSVaclav Hapla   const PetscInt    *roffset=NULL;
779a0d42dbcSVaclav Hapla   PetscInt          *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */
780a0d42dbcSVaclav Hapla   const PetscInt    *cone=NULL;
781adeface4SVaclav Hapla   PetscInt           coneSize, ind0;
7822e745bdaSMatthew G. Knepley   MPI_Comm           comm;
7832e745bdaSMatthew G. Knepley   PetscMPIInt        rank;
7842e745bdaSMatthew G. Knepley   PetscInt           debug = 0;
7852e745bdaSMatthew G. Knepley   PetscErrorCode     ierr;
7862e745bdaSMatthew G. Knepley 
7872e745bdaSMatthew G. Knepley   PetscFunctionBegin;
788df6a9fadSVaclav Hapla   ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr);
7892e745bdaSMatthew G. Knepley   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr);
7903ede9f65SMatthew G. Knepley   if (nroots < 0) PetscFunctionReturn(0);
791f80536cbSVaclav Hapla   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
792f80536cbSVaclav Hapla   ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr);
793dc21a0bfSVaclav Hapla #if defined(PETSC_USE_DEBUG)
794dc21a0bfSVaclav Hapla   ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr);
795dc21a0bfSVaclav Hapla   ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr);
796dc21a0bfSVaclav Hapla #endif
797f80536cbSVaclav Hapla   ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr);
7988a650c75SVaclav Hapla   ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr);
7992e745bdaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
8002e745bdaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
8012e745bdaSMatthew G. Knepley   if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Roots\n");CHKERRQ(ierr);}
8029e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8039e24d8a0SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8049e24d8a0SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
8052e745bdaSMatthew G. Knepley     /* Translate all points to root numbering */
8068a650c75SVaclav Hapla     for (c = 0; c < 2; c++) {
8078a650c75SVaclav Hapla       if (coneSize > 1) {
8088a650c75SVaclav Hapla         ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr);
8098a650c75SVaclav Hapla         if (ind0 < 0) {
8108a650c75SVaclav Hapla           roots[p][c] = cone[c];
8118a650c75SVaclav Hapla           rootsRanks[p][c] = rank;
812c8148b97SVaclav Hapla         } else {
8138a650c75SVaclav Hapla           roots[p][c] = remotes[ind0].index;
8148a650c75SVaclav Hapla           rootsRanks[p][c] = remotes[ind0].rank;
8158a650c75SVaclav Hapla         }
8168a650c75SVaclav Hapla       } else {
8178a650c75SVaclav Hapla         roots[p][c] = -1;
8188a650c75SVaclav Hapla         rootsRanks[p][c] = -1;
8192e745bdaSMatthew G. Knepley       }
8202e745bdaSMatthew G. Knepley     }
8218a650c75SVaclav Hapla   }
8228a650c75SVaclav Hapla   if (debug) {
8238a650c75SVaclav Hapla     for (p = 0; p < nroots; ++p) {
8248a650c75SVaclav Hapla       ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8258a650c75SVaclav Hapla       ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
8268a650c75SVaclav Hapla       if (coneSize > 1) {
8278a650c75SVaclav Hapla         ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: cone=[%D %D] roots=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], roots[p][0], roots[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);
8288a650c75SVaclav Hapla       }
8298a650c75SVaclav Hapla     }
8308a650c75SVaclav Hapla     ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);
8318a650c75SVaclav Hapla   }
8329e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8338ccb905dSVaclav Hapla     for (c = 0; c < 2; c++) {
8348ccb905dSVaclav Hapla       leaves[p][c] = -2;
8358ccb905dSVaclav Hapla       leavesRanks[p][c] = -2;
8368ccb905dSVaclav Hapla     }
837c8148b97SVaclav Hapla   }
8382e745bdaSMatthew G. Knepley   ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr);
8398a650c75SVaclav Hapla   ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr);
8402e745bdaSMatthew G. Knepley   ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr);
8418a650c75SVaclav Hapla   ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr);
842c8148b97SVaclav Hapla   if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);}
843c8148b97SVaclav Hapla   if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referred leaves\n");CHKERRQ(ierr);}
8449e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8459e24d8a0SVaclav Hapla     if (leaves[p][0] < 0) continue;
8469e24d8a0SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8479e24d8a0SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
848ea211068SVaclav Hapla     if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: cone=[%D %D] leaves=[%D %D] roots=[%D %D] leavesRanks=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], leaves[p][0], leaves[p][1], roots[p][0], roots[p][1], leavesRanks[p][0], leavesRanks[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);}
849ea211068SVaclav Hapla     if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][0] != rootsRanks[p][0])) {
850f80536cbSVaclav Hapla       PetscInt masterCone[2];
851f80536cbSVaclav Hapla       /* Translate these two cone points back to leave numbering */
852f80536cbSVaclav Hapla       for (c = 0; c < 2; c++) {
853def636c8SVaclav Hapla         if (leavesRanks[p][c] == rank) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - remote rank of point %D is the same rank",leavesRanks[p][c]);
854f80536cbSVaclav Hapla         /* Find index of rank leavesRanks[p][c] among remote ranks */
855f80536cbSVaclav Hapla         /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */
856f80536cbSVaclav Hapla         ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr);
857f80536cbSVaclav Hapla         if (PetscUnlikely(r < 0)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - rank %D not found among remote ranks",leavesRanks[p][c]);
858f80536cbSVaclav Hapla         /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */
859f80536cbSVaclav Hapla         o = roffset[r];
860f80536cbSVaclav Hapla         n = roffset[r+1] - o;
861f80536cbSVaclav Hapla         ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr);
862adeface4SVaclav Hapla         if (PetscUnlikely(ind0 < 0)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "No cone point of %D is connected to (%D, %D) - it seems there is missing connection in point SF!",p,ranks[r],leaves[p][c]);
863f80536cbSVaclav Hapla         /* Get the corresponding local point */
864f80536cbSVaclav Hapla         masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr);
865f80536cbSVaclav Hapla       }
866f80536cbSVaclav Hapla       if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: masterCone=[%D %D]\n", rank, p, masterCone[0], masterCone[1]);CHKERRQ(ierr);}
867f80536cbSVaclav Hapla       /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */
868f80536cbSVaclav Hapla       ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr);
86923aaf07bSVaclav Hapla     }
8702e745bdaSMatthew G. Knepley   }
871adeface4SVaclav Hapla #if defined(PETSC_USE_DEBUG)
872adeface4SVaclav Hapla   ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr);
873adeface4SVaclav Hapla   for (r = 0; r < nleaves; ++r) {
874adeface4SVaclav Hapla     p = locals[r];
875adeface4SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
876adeface4SVaclav Hapla     if (!coneSize) continue;
877adeface4SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
878adeface4SVaclav Hapla     for (c = 0; c < 2; c++) {
879adeface4SVaclav Hapla       ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr);
880adeface4SVaclav Hapla       if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing its cone point cone[%D] = %D!", p, c, cone[c]);
881adeface4SVaclav Hapla       if (leaves[p][c] != remotes[ind0].index || leavesRanks[p][c] != remotes[ind0].rank) {
882adeface4SVaclav Hapla         if (leavesRanks[p][c] == rank) {
883adeface4SVaclav Hapla           PetscInt ind1;
884adeface4SVaclav Hapla           ierr = PetscFindInt(leaves[p][c], nleaves, locals, &ind1);CHKERRQ(ierr);
885adeface4SVaclav Hapla           if (ind1 < 0) {
886adeface4SVaclav Hapla             SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). The latter was not even found among the local SF points - it is probably broken!", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]);
887adeface4SVaclav Hapla           } else {
888adeface4SVaclav Hapla             SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced %D --> (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leaves[p][c], remotes[ind1].rank, remotes[ind1].index);
889adeface4SVaclav Hapla           }
890adeface4SVaclav Hapla         } else {
891adeface4SVaclav Hapla           SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]);
892adeface4SVaclav Hapla         }
893adeface4SVaclav Hapla       }
894adeface4SVaclav Hapla     }
895adeface4SVaclav Hapla   }
896adeface4SVaclav Hapla #endif
8972e745bdaSMatthew G. Knepley   if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);}
8988a650c75SVaclav Hapla   ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr);
8997c7bb832SVaclav Hapla   ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr);
9002e745bdaSMatthew G. Knepley   PetscFunctionReturn(0);
9012e745bdaSMatthew G. Knepley }
9022e745bdaSMatthew G. Knepley 
9037bffde78SMichael Lange /* This interpolates the PointSF in parallel following local interpolation */
9047bffde78SMichael Lange static PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF, PetscInt depth)
9057bffde78SMichael Lange {
9069852e123SBarry Smith   PetscMPIInt        size, rank;
9077bffde78SMichael Lange   PetscInt           p, c, d, dof, offset;
908ffd6914dSSatish Balay   PetscInt           numLeaves, numRoots, candidatesSize, candidatesRemoteSize;
9097bffde78SMichael Lange   const PetscInt    *localPoints;
9107bffde78SMichael Lange   const PetscSFNode *remotePoints;
9117bffde78SMichael Lange   PetscSFNode       *candidates, *candidatesRemote, *claims;
9127bffde78SMichael Lange   PetscSection       candidateSection, candidateSectionRemote, claimSection;
913e8f14785SLisandro Dalcin   PetscHMapI         leafhash;
914e8f14785SLisandro Dalcin   PetscHMapIJ        roothash;
9157bffde78SMichael Lange   PetscHashIJKey     key;
9167bffde78SMichael Lange   PetscErrorCode     ierr;
9177bffde78SMichael Lange 
9187bffde78SMichael Lange   PetscFunctionBegin;
9199852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
9207bffde78SMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
9217bffde78SMichael Lange   ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr);
9229852e123SBarry Smith   if (size < 2 || numRoots < 0) PetscFunctionReturn(0);
92325afeb17SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr);
9247bffde78SMichael Lange   /* Build hashes of points in the SF for efficient lookup */
925e8f14785SLisandro Dalcin   ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr);
926e8f14785SLisandro Dalcin   ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr);
9277bffde78SMichael Lange   for (p = 0; p < numLeaves; ++p) {
928e8f14785SLisandro Dalcin     ierr = PetscHMapISet(leafhash, localPoints[p], p);CHKERRQ(ierr);
929e8f14785SLisandro Dalcin     key.i = remotePoints[p].index;
930e8f14785SLisandro Dalcin     key.j = remotePoints[p].rank;
931e8f14785SLisandro Dalcin     ierr = PetscHMapIJSet(roothash, key, p);CHKERRQ(ierr);
9327bffde78SMichael Lange   }
9337bffde78SMichael Lange   /* Build a section / SFNode array of candidate points in the single-level adjacency of leaves,
9347bffde78SMichael Lange      where each candidate is defined by the root entry for the other vertex that defines the edge. */
9357bffde78SMichael Lange   ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr);
9367bffde78SMichael Lange   ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr);
9377bffde78SMichael Lange   {
938ffd6914dSSatish Balay     PetscInt leaf, root, idx, a, *adj = NULL;
9397bffde78SMichael Lange     for (p = 0; p < numLeaves; ++p) {
9407bffde78SMichael Lange       PetscInt adjSize = PETSC_DETERMINE;
9417bffde78SMichael Lange       ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr);
9427bffde78SMichael Lange       for (a = 0; a < adjSize; ++a) {
943e8f14785SLisandro Dalcin         ierr = PetscHMapIGet(leafhash, adj[a], &leaf);CHKERRQ(ierr);
9447bffde78SMichael Lange         if (leaf >= 0) {ierr = PetscSectionAddDof(candidateSection, localPoints[p], 1);CHKERRQ(ierr);}
9457bffde78SMichael Lange       }
9467bffde78SMichael Lange     }
9477bffde78SMichael Lange     ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr);
9487bffde78SMichael Lange     ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr);
9497bffde78SMichael Lange     ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr);
9507bffde78SMichael Lange     for (p = 0; p < numLeaves; ++p) {
9517bffde78SMichael Lange       PetscInt adjSize = PETSC_DETERMINE;
9527bffde78SMichael Lange       ierr = PetscSectionGetOffset(candidateSection, localPoints[p], &offset);CHKERRQ(ierr);
9537bffde78SMichael Lange       ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr);
9547bffde78SMichael Lange       for (idx = 0, a = 0; a < adjSize; ++a) {
955e8f14785SLisandro Dalcin         ierr = PetscHMapIGet(leafhash, adj[a], &root);CHKERRQ(ierr);
9567bffde78SMichael Lange         if (root >= 0) candidates[offset+idx++] = remotePoints[root];
9577bffde78SMichael Lange       }
9587bffde78SMichael Lange     }
9597bffde78SMichael Lange     ierr = PetscFree(adj);CHKERRQ(ierr);
9607bffde78SMichael Lange   }
9617bffde78SMichael Lange   /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */
9627bffde78SMichael Lange   {
9637bffde78SMichael Lange     PetscSF   sfMulti, sfInverse, sfCandidates;
9647bffde78SMichael Lange     PetscInt *remoteOffsets;
9657bffde78SMichael Lange     ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr);
9667bffde78SMichael Lange     ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr);
9677bffde78SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr);
9687bffde78SMichael Lange     ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr);
9697bffde78SMichael Lange     ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr);
9707bffde78SMichael Lange     ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr);
9717bffde78SMichael Lange     ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr);
9727bffde78SMichael Lange     ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr);
9737bffde78SMichael Lange     ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr);
9747bffde78SMichael Lange     ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr);
9757bffde78SMichael Lange     ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr);
9767bffde78SMichael Lange     ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
9777bffde78SMichael Lange   }
9787bffde78SMichael Lange   /* Walk local roots and check for each remote candidate whether we know all required points,
9797bffde78SMichael Lange      either from owning it or having a root entry in the point SF. If we do we place a claim
9807bffde78SMichael Lange      by replacing the vertex number with our edge ID. */
9817bffde78SMichael Lange   {
9827bffde78SMichael Lange     PetscInt        idx, root, joinSize, vertices[2];
9837bffde78SMichael Lange     const PetscInt *rootdegree, *join = NULL;
9847bffde78SMichael Lange     ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr);
9857bffde78SMichael Lange     ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr);
9867bffde78SMichael Lange     /* Loop remote edge connections and put in a claim if both vertices are known */
9877bffde78SMichael Lange     for (idx = 0, p = 0; p < numRoots; ++p) {
9887bffde78SMichael Lange       for (d = 0; d < rootdegree[p]; ++d) {
9897bffde78SMichael Lange         ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr);
9907bffde78SMichael Lange         ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr);
9917bffde78SMichael Lange         for (c = 0; c < dof; ++c) {
9927bffde78SMichael Lange           /* We own both vertices, so we claim the edge by replacing vertex with edge */
9937bffde78SMichael Lange           if (candidatesRemote[offset+c].rank == rank) {
9947bffde78SMichael Lange             vertices[0] = p; vertices[1] = candidatesRemote[offset+c].index;
9957bffde78SMichael Lange             ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
9967bffde78SMichael Lange             if (joinSize == 1) candidatesRemote[offset+c].index = join[0];
9977bffde78SMichael Lange             ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
9987bffde78SMichael Lange             continue;
9997bffde78SMichael Lange           }
10007bffde78SMichael Lange           /* If we own one vertex and share a root with the other, we claim it */
1001e8f14785SLisandro Dalcin           key.i = candidatesRemote[offset+c].index;
1002e8f14785SLisandro Dalcin           key.j = candidatesRemote[offset+c].rank;
1003e8f14785SLisandro Dalcin           ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr);
10047bffde78SMichael Lange           if (root >= 0) {
10057bffde78SMichael Lange             vertices[0] = p; vertices[1] = localPoints[root];
10067bffde78SMichael Lange             ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
10077bffde78SMichael Lange             if (joinSize == 1) {
10087bffde78SMichael Lange               candidatesRemote[offset+c].index = join[0];
10097bffde78SMichael Lange               candidatesRemote[offset+c].rank = rank;
10107bffde78SMichael Lange             }
10117bffde78SMichael Lange             ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
10127bffde78SMichael Lange           }
10137bffde78SMichael Lange         }
10147bffde78SMichael Lange         idx++;
10157bffde78SMichael Lange       }
10167bffde78SMichael Lange     }
10177bffde78SMichael Lange   }
10187bffde78SMichael Lange   /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */
10197bffde78SMichael Lange   {
10207bffde78SMichael Lange     PetscSF         sfMulti, sfClaims, sfPointNew;
1021e8f14785SLisandro Dalcin     PetscHMapI      claimshash;
10227bffde78SMichael Lange     PetscInt        size, pStart, pEnd, root, joinSize, numLocalNew;
10237bffde78SMichael Lange     PetscInt       *remoteOffsets, *localPointsNew, vertices[2];
1024ffd6914dSSatish Balay     const PetscInt *join = NULL;
10257bffde78SMichael Lange     PetscSFNode    *remotePointsNew;
10267bffde78SMichael Lange     ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr);
10277bffde78SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr);
10287bffde78SMichael Lange     ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr);
10297bffde78SMichael Lange     ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr);
10307bffde78SMichael Lange     ierr = PetscSectionGetStorageSize(claimSection, &size);CHKERRQ(ierr);
10317bffde78SMichael Lange     ierr = PetscMalloc1(size, &claims);CHKERRQ(ierr);
10327bffde78SMichael Lange     ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr);
10337bffde78SMichael Lange     ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr);
10347bffde78SMichael Lange     ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr);
10357bffde78SMichael Lange     ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
10367bffde78SMichael Lange     /* Walk the original section of local supports and add an SF entry for each updated item */
1037e8f14785SLisandro Dalcin     ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr);
10387bffde78SMichael Lange     for (p = 0; p < numRoots; ++p) {
10397bffde78SMichael Lange       ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr);
10407bffde78SMichael Lange       ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr);
10417bffde78SMichael Lange       for (d = 0; d < dof; ++d) {
10427bffde78SMichael Lange         if (candidates[offset+d].index != claims[offset+d].index) {
1043e8f14785SLisandro Dalcin           key.i = candidates[offset+d].index;
1044e8f14785SLisandro Dalcin           key.j = candidates[offset+d].rank;
1045e8f14785SLisandro Dalcin           ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr);
10467bffde78SMichael Lange           if (root >= 0) {
10477bffde78SMichael Lange             vertices[0] = p; vertices[1] = localPoints[root];
10487bffde78SMichael Lange             ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
1049e8f14785SLisandro Dalcin             if (joinSize == 1) {ierr = PetscHMapISet(claimshash, join[0], offset+d);CHKERRQ(ierr);}
10507bffde78SMichael Lange             ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr);
10517bffde78SMichael Lange           }
10527bffde78SMichael Lange         }
10537bffde78SMichael Lange       }
10547bffde78SMichael Lange     }
10557bffde78SMichael Lange     /* Create new pointSF from hashed claims */
1056e8f14785SLisandro Dalcin     ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr);
10577bffde78SMichael Lange     ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
10587bffde78SMichael Lange     ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr);
10597bffde78SMichael Lange     ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr);
10607bffde78SMichael Lange     for (p = 0; p < numLeaves; ++p) {
10617bffde78SMichael Lange       localPointsNew[p] = localPoints[p];
10627bffde78SMichael Lange       remotePointsNew[p].index = remotePoints[p].index;
10637bffde78SMichael Lange       remotePointsNew[p].rank  = remotePoints[p].rank;
10647bffde78SMichael Lange     }
1065f3190fc2SToby Isaac     p = numLeaves;
1066e8f14785SLisandro Dalcin     ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr);
1067f3190fc2SToby Isaac     ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr);
10687bffde78SMichael Lange     for (p = numLeaves; p < numLeaves + numLocalNew; ++p) {
1069e8f14785SLisandro Dalcin       ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr);
10707bffde78SMichael Lange       remotePointsNew[p] = claims[offset];
10717bffde78SMichael Lange     }
10727bffde78SMichael Lange     ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr);
10737bffde78SMichael Lange     ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
10747bffde78SMichael Lange     ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr);
10757bffde78SMichael Lange     ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr);
1076e8f14785SLisandro Dalcin     ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr);
10777bffde78SMichael Lange   }
1078e8f14785SLisandro Dalcin   ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr);
1079e8f14785SLisandro Dalcin   ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr);
10807bffde78SMichael Lange   ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr);
10817bffde78SMichael Lange   ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr);
10827bffde78SMichael Lange   ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr);
10837bffde78SMichael Lange   ierr = PetscFree(candidates);CHKERRQ(ierr);
10847bffde78SMichael Lange   ierr = PetscFree(candidatesRemote);CHKERRQ(ierr);
10857bffde78SMichael Lange   ierr = PetscFree(claims);CHKERRQ(ierr);
108625afeb17SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr);
10877bffde78SMichael Lange   PetscFunctionReturn(0);
10887bffde78SMichael Lange }
10897bffde78SMichael Lange 
10900c795ddcSMatthew G. Knepley /*@C
109180330477SMatthew G. Knepley   DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc.
109280330477SMatthew G. Knepley 
109380330477SMatthew G. Knepley   Collective on DM
109480330477SMatthew G. Knepley 
1095e56d480eSMatthew G. Knepley   Input Parameters:
1096e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices
109710a67516SMatthew G. Knepley - dmInt - The interpolated DM
109880330477SMatthew G. Knepley 
109980330477SMatthew G. Knepley   Output Parameter:
11004e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object
110180330477SMatthew G. Knepley 
110280330477SMatthew G. Knepley   Level: intermediate
110380330477SMatthew G. Knepley 
110495452b02SPatrick Sanan   Notes:
110595452b02SPatrick Sanan     It does not copy over the coordinates.
110643eeeb2dSStefano Zampini 
110780330477SMatthew G. Knepley .keywords: mesh
110843eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates()
110980330477SMatthew G. Knepley @*/
11109f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt)
11119f074e33SMatthew G Knepley {
11129a5b13a2SMatthew G Knepley   DM             idm, odm = dm;
11137bffde78SMichael Lange   PetscSF        sfPoint;
11142e1b13c2SMatthew G. Knepley   PetscInt       depth, dim, d;
111510a67516SMatthew G. Knepley   const char    *name;
1116b325530aSVaclav Hapla   PetscBool      flg=PETSC_TRUE;
11179f074e33SMatthew G Knepley   PetscErrorCode ierr;
11189f074e33SMatthew G Knepley 
11199f074e33SMatthew G Knepley   PetscFunctionBegin;
112010a67516SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
112110a67516SMatthew G. Knepley   PetscValidPointer(dmInt, 2);
1122a72f3261SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr);
11232e1b13c2SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1124c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
1125b21b8912SMatthew G. Knepley   if ((depth == dim) || (dim <= 1)) {
112676b791aaSMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
112776b791aaSMatthew G. Knepley     idm  = dm;
1128b21b8912SMatthew G. Knepley   } else {
11299a5b13a2SMatthew G Knepley     for (d = 1; d < dim; ++d) {
11309a5b13a2SMatthew G Knepley       /* Create interpolated mesh */
113110a67516SMatthew G. Knepley       ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr);
11329a5b13a2SMatthew G Knepley       ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr);
1133c73cfb54SMatthew G. Knepley       ierr = DMSetDimension(idm, dim);CHKERRQ(ierr);
11347bffde78SMichael Lange       if (depth > 0) {
11357bffde78SMichael Lange         ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr);
11367bffde78SMichael Lange         ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr);
11377bffde78SMichael Lange         ierr = DMPlexInterpolatePointSF(idm, sfPoint, depth);CHKERRQ(ierr);
11387bffde78SMichael Lange       }
11399a5b13a2SMatthew G Knepley       if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);}
11409a5b13a2SMatthew G Knepley       odm = idm;
11419f074e33SMatthew G Knepley     }
114210a67516SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) dm,  &name);CHKERRQ(ierr);
114310a67516SMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) idm,  name);CHKERRQ(ierr);
114410a67516SMatthew G. Knepley     ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr);
114510a67516SMatthew G. Knepley     ierr = DMCopyLabels(dm, idm);CHKERRQ(ierr);
1146b325530aSVaclav Hapla     ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr);
1147b325530aSVaclav Hapla     if (flg) {ierr = DMPlexOrientInterface(idm);CHKERRQ(ierr);}
114884699f70SSatish Balay   }
114943eeeb2dSStefano Zampini   {
115043eeeb2dSStefano Zampini     PetscBool            isper;
115143eeeb2dSStefano Zampini     const PetscReal      *maxCell, *L;
115243eeeb2dSStefano Zampini     const DMBoundaryType *bd;
115343eeeb2dSStefano Zampini 
115443eeeb2dSStefano Zampini     ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
115543eeeb2dSStefano Zampini     ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr);
115643eeeb2dSStefano Zampini   }
11579a5b13a2SMatthew G Knepley   *dmInt = idm;
1158a72f3261SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr);
11599f074e33SMatthew G Knepley   PetscFunctionReturn(0);
11609f074e33SMatthew G Knepley }
116107b0a1fcSMatthew G Knepley 
116280330477SMatthew G. Knepley /*@
116380330477SMatthew G. Knepley   DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices
116480330477SMatthew G. Knepley 
116580330477SMatthew G. Knepley   Collective on DM
116680330477SMatthew G. Knepley 
116780330477SMatthew G. Knepley   Input Parameter:
116880330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates
116980330477SMatthew G. Knepley 
117080330477SMatthew G. Knepley   Output Parameter:
117180330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates
117280330477SMatthew G. Knepley 
117380330477SMatthew G. Knepley   Level: intermediate
117480330477SMatthew G. Knepley 
117580330477SMatthew G. Knepley   Note: This is typically used when adding pieces other than vertices to a mesh
117680330477SMatthew G. Knepley 
117780330477SMatthew G. Knepley .keywords: mesh
117865f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection()
117980330477SMatthew G. Knepley @*/
118007b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB)
118107b0a1fcSMatthew G Knepley {
118207b0a1fcSMatthew G Knepley   Vec            coordinatesA, coordinatesB;
118343eeeb2dSStefano Zampini   VecType        vtype;
118407b0a1fcSMatthew G Knepley   PetscSection   coordSectionA, coordSectionB;
118507b0a1fcSMatthew G Knepley   PetscScalar   *coordsA, *coordsB;
11860bedd6beSMatthew G. Knepley   PetscInt       spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d;
118743eeeb2dSStefano Zampini   PetscInt       cStartA, cEndA, cStartB, cEndB, cS, cE;
118843eeeb2dSStefano Zampini   PetscBool      lc = PETSC_FALSE;
118907b0a1fcSMatthew G Knepley   PetscErrorCode ierr;
119007b0a1fcSMatthew G Knepley 
119107b0a1fcSMatthew G Knepley   PetscFunctionBegin;
119243eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
119343eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
119476b791aaSMatthew G. Knepley   if (dmA == dmB) PetscFunctionReturn(0);
119507b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr);
119607b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr);
119707b0a1fcSMatthew G Knepley   if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB);
119843eeeb2dSStefano Zampini   ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr);
119943eeeb2dSStefano Zampini   ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr);
120069d8a9ceSMatthew G. Knepley   ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr);
120169d8a9ceSMatthew G. Knepley   ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr);
1202972bc18aSToby Isaac   if (coordSectionA == coordSectionB) PetscFunctionReturn(0);
12030bedd6beSMatthew G. Knepley   ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr);
12040bedd6beSMatthew G. Knepley   if (!Nf) PetscFunctionReturn(0);
12050bedd6beSMatthew G. Knepley   if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf);
1206df26b574SMatthew G. Knepley   if (!coordSectionB) {
1207df26b574SMatthew G. Knepley     PetscInt dim;
1208df26b574SMatthew G. Knepley 
1209df26b574SMatthew G. Knepley     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr);
1210df26b574SMatthew G. Knepley     ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr);
1211df26b574SMatthew G. Knepley     ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr);
1212df26b574SMatthew G. Knepley     ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr);
1213df26b574SMatthew G. Knepley   }
121407b0a1fcSMatthew G Knepley   ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr);
121507b0a1fcSMatthew G Knepley   ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr);
121607b0a1fcSMatthew G Knepley   ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr);
121743eeeb2dSStefano Zampini   ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr);
121843eeeb2dSStefano Zampini   if (cStartA <= cS && cS < cEndA) { /* localized coordinates */
1219*367003a6SStefano Zampini     if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB);
122043eeeb2dSStefano Zampini     cS = cS - cStartA + cStartB;
122143eeeb2dSStefano Zampini     cE = vEndB;
122243eeeb2dSStefano Zampini     lc = PETSC_TRUE;
122343eeeb2dSStefano Zampini   } else {
122443eeeb2dSStefano Zampini     cS = vStartB;
122543eeeb2dSStefano Zampini     cE = vEndB;
122643eeeb2dSStefano Zampini   }
122743eeeb2dSStefano Zampini   ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr);
122807b0a1fcSMatthew G Knepley   for (v = vStartB; v < vEndB; ++v) {
122907b0a1fcSMatthew G Knepley     ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr);
123007b0a1fcSMatthew G Knepley     ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr);
123107b0a1fcSMatthew G Knepley   }
123243eeeb2dSStefano Zampini   if (lc) { /* localized coordinates */
123343eeeb2dSStefano Zampini     PetscInt c;
123443eeeb2dSStefano Zampini 
123543eeeb2dSStefano Zampini     for (c = cS-cStartB; c < cEndB-cStartB; c++) {
123643eeeb2dSStefano Zampini       PetscInt dof;
123743eeeb2dSStefano Zampini 
123843eeeb2dSStefano Zampini       ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr);
123943eeeb2dSStefano Zampini       ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr);
124043eeeb2dSStefano Zampini       ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr);
124143eeeb2dSStefano Zampini     }
124243eeeb2dSStefano Zampini   }
124307b0a1fcSMatthew G Knepley   ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr);
124407b0a1fcSMatthew G Knepley   ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr);
124507b0a1fcSMatthew G Knepley   ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr);
12468b9ced59SLisandro Dalcin   ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr);
124707b0a1fcSMatthew G Knepley   ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr);
124807b0a1fcSMatthew G Knepley   ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr);
124943eeeb2dSStefano Zampini   ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr);
125043eeeb2dSStefano Zampini   ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr);
125143eeeb2dSStefano Zampini   ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr);
125243eeeb2dSStefano Zampini   ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr);
125307b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr);
125407b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr);
125507b0a1fcSMatthew G Knepley   for (v = 0; v < vEndB-vStartB; ++v) {
125643eeeb2dSStefano Zampini     PetscInt offA, offB;
125743eeeb2dSStefano Zampini 
125843eeeb2dSStefano Zampini     ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr);
125943eeeb2dSStefano Zampini     ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr);
126007b0a1fcSMatthew G Knepley     for (d = 0; d < spaceDim; ++d) {
126143eeeb2dSStefano Zampini       coordsB[offB+d] = coordsA[offA+d];
126243eeeb2dSStefano Zampini     }
126343eeeb2dSStefano Zampini   }
126443eeeb2dSStefano Zampini   if (lc) { /* localized coordinates */
126543eeeb2dSStefano Zampini     PetscInt c;
126643eeeb2dSStefano Zampini 
126743eeeb2dSStefano Zampini     for (c = cS-cStartB; c < cEndB-cStartB; c++) {
126843eeeb2dSStefano Zampini       PetscInt dof, offA, offB;
126943eeeb2dSStefano Zampini 
127043eeeb2dSStefano Zampini       ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr);
127143eeeb2dSStefano Zampini       ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr);
127243eeeb2dSStefano Zampini       ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr);
127343eeeb2dSStefano Zampini       ierr = PetscMemcpy(coordsB + offB,coordsA + offA,dof*sizeof(*coordsB));CHKERRQ(ierr);
127407b0a1fcSMatthew G Knepley     }
127507b0a1fcSMatthew G Knepley   }
127607b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr);
127707b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr);
127807b0a1fcSMatthew G Knepley   ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr);
127907b0a1fcSMatthew G Knepley   ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr);
128007b0a1fcSMatthew G Knepley   PetscFunctionReturn(0);
128107b0a1fcSMatthew G Knepley }
12825c386225SMatthew G. Knepley 
12834e3744c5SMatthew G. Knepley /*@
12844e3744c5SMatthew G. Knepley   DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh
12854e3744c5SMatthew G. Knepley 
12864e3744c5SMatthew G. Knepley   Collective on DM
12874e3744c5SMatthew G. Knepley 
12884e3744c5SMatthew G. Knepley   Input Parameter:
12894e3744c5SMatthew G. Knepley . dm - The complete DMPlex object
12904e3744c5SMatthew G. Knepley 
12914e3744c5SMatthew G. Knepley   Output Parameter:
12924e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices
12934e3744c5SMatthew G. Knepley 
12944e3744c5SMatthew G. Knepley   Level: intermediate
12954e3744c5SMatthew G. Knepley 
129695452b02SPatrick Sanan   Notes:
129795452b02SPatrick Sanan     It does not copy over the coordinates.
129843eeeb2dSStefano Zampini 
12994e3744c5SMatthew G. Knepley .keywords: mesh
130043eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates()
13014e3744c5SMatthew G. Knepley @*/
13024e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint)
13034e3744c5SMatthew G. Knepley {
13044e3744c5SMatthew G. Knepley   DM             udm;
1305c9f63434SStefano Zampini   PetscInt       dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone;
13064e3744c5SMatthew G. Knepley   PetscErrorCode ierr;
13074e3744c5SMatthew G. Knepley 
13084e3744c5SMatthew G. Knepley   PetscFunctionBegin;
130943eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
131043eeeb2dSStefano Zampini   PetscValidPointer(dmUnint, 2);
1311c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
13124e3744c5SMatthew G. Knepley   if (dim <= 1) {
13134e3744c5SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
1314595d4abbSMatthew G. Knepley     *dmUnint = dm;
1315595d4abbSMatthew G. Knepley     PetscFunctionReturn(0);
13164e3744c5SMatthew G. Knepley   }
1317595d4abbSMatthew G. Knepley   ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr);
1318595d4abbSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
1319c9f63434SStefano Zampini   ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr);
13204e3744c5SMatthew G. Knepley   ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr);
13214e3744c5SMatthew G. Knepley   ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr);
1322c73cfb54SMatthew G. Knepley   ierr = DMSetDimension(udm, dim);CHKERRQ(ierr);
13234e3744c5SMatthew G. Knepley   ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr);
13244e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1325595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
13264e3744c5SMatthew G. Knepley 
13274e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
13284e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
13294e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
13304e3744c5SMatthew G. Knepley 
13314e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) ++coneSize;
13324e3744c5SMatthew G. Knepley     }
13334e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
13344e3744c5SMatthew G. Knepley     ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr);
1335595d4abbSMatthew G. Knepley     maxConeSize = PetscMax(maxConeSize, coneSize);
13364e3744c5SMatthew G. Knepley   }
13374e3744c5SMatthew G. Knepley   ierr = DMSetUp(udm);CHKERRQ(ierr);
1338785e854fSJed Brown   ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr);
13394e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1340595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
13414e3744c5SMatthew G. Knepley 
13424e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
13434e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
13444e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
13454e3744c5SMatthew G. Knepley 
13464e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p;
13474e3744c5SMatthew G. Knepley     }
13484e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
13494e3744c5SMatthew G. Knepley     ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr);
13504e3744c5SMatthew G. Knepley   }
13514e3744c5SMatthew G. Knepley   ierr = PetscFree(cone);CHKERRQ(ierr);
1352c9f63434SStefano Zampini   ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr);
13534e3744c5SMatthew G. Knepley   ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr);
13544e3744c5SMatthew G. Knepley   ierr = DMPlexStratify(udm);CHKERRQ(ierr);
13555c7de58aSMatthew G. Knepley   /* Reduce SF */
13565c7de58aSMatthew G. Knepley   {
13575c7de58aSMatthew G. Knepley     PetscSF            sfPoint, sfPointUn;
13585c7de58aSMatthew G. Knepley     const PetscSFNode *remotePoints;
13595c7de58aSMatthew G. Knepley     const PetscInt    *localPoints;
13605c7de58aSMatthew G. Knepley     PetscSFNode       *remotePointsUn;
13615c7de58aSMatthew G. Knepley     PetscInt          *localPointsUn;
13625c7de58aSMatthew G. Knepley     PetscInt           vEnd, numRoots, numLeaves, l;
13635c7de58aSMatthew G. Knepley     PetscInt           numLeavesUn = 0, n = 0;
13645c7de58aSMatthew G. Knepley     PetscErrorCode     ierr;
13655c7de58aSMatthew G. Knepley 
13665c7de58aSMatthew G. Knepley     /* Get original SF information */
13675c7de58aSMatthew G. Knepley     ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
13685c7de58aSMatthew G. Knepley     ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr);
13695c7de58aSMatthew G. Knepley     ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr);
13705c7de58aSMatthew G. Knepley     ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr);
13715c7de58aSMatthew G. Knepley     /* Allocate space for cells and vertices */
13725c7de58aSMatthew G. Knepley     for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++;
13735c7de58aSMatthew G. Knepley     /* Fill in leaves */
13745c7de58aSMatthew G. Knepley     if (vEnd >= 0) {
13755c7de58aSMatthew G. Knepley       ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr);
13765c7de58aSMatthew G. Knepley       ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr);
13775c7de58aSMatthew G. Knepley       for (l = 0; l < numLeaves; l++) {
13785c7de58aSMatthew G. Knepley         if (localPoints[l] < vEnd) {
13795c7de58aSMatthew G. Knepley           localPointsUn[n]        = localPoints[l];
13805c7de58aSMatthew G. Knepley           remotePointsUn[n].rank  = remotePoints[l].rank;
13815c7de58aSMatthew G. Knepley           remotePointsUn[n].index = remotePoints[l].index;
13825c7de58aSMatthew G. Knepley           ++n;
13835c7de58aSMatthew G. Knepley         }
13845c7de58aSMatthew G. Knepley       }
13855c7de58aSMatthew G. Knepley       if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn);
13865c7de58aSMatthew G. Knepley       ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr);
13875c7de58aSMatthew G. Knepley     }
13885c7de58aSMatthew G. Knepley   }
138943eeeb2dSStefano Zampini   {
139043eeeb2dSStefano Zampini     PetscBool            isper;
139143eeeb2dSStefano Zampini     const PetscReal      *maxCell, *L;
139243eeeb2dSStefano Zampini     const DMBoundaryType *bd;
139343eeeb2dSStefano Zampini 
139443eeeb2dSStefano Zampini     ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
139543eeeb2dSStefano Zampini     ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr);
139643eeeb2dSStefano Zampini   }
139743eeeb2dSStefano Zampini 
13984e3744c5SMatthew G. Knepley   *dmUnint = udm;
13994e3744c5SMatthew G. Knepley   PetscFunctionReturn(0);
14004e3744c5SMatthew G. Knepley }
1401