1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h> 4e8f14785SLisandro Dalcin 5e8f14785SLisandro Dalcin /* HashIJKL */ 6e8f14785SLisandro Dalcin 7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h> 8e8f14785SLisandro Dalcin 9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey; 10e8f14785SLisandro Dalcin 11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \ 12e8f14785SLisandro Dalcin PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \ 13e8f14785SLisandro Dalcin PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l))) 14e8f14785SLisandro Dalcin 15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \ 16e8f14785SLisandro Dalcin (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0) 17e8f14785SLisandro Dalcin 18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1) 19e8f14785SLisandro Dalcin 209f074e33SMatthew G Knepley 219f074e33SMatthew G Knepley /* 229a5b13a2SMatthew G Knepley DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell 23cd921712SStefano Zampini This assumes that the mesh is not interpolated from the depth of point p to the vertices 249f074e33SMatthew G Knepley */ 25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 269f074e33SMatthew G Knepley { 279f074e33SMatthew G Knepley const PetscInt *cone = NULL; 28cd921712SStefano Zampini PetscInt coneSize; 299f074e33SMatthew G Knepley PetscErrorCode ierr; 309f074e33SMatthew G Knepley 319f074e33SMatthew G Knepley PetscFunctionBegin; 329f074e33SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 349f074e33SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 35439ece16SMatthew G. Knepley ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr); 36439ece16SMatthew G. Knepley PetscFunctionReturn(0); 37439ece16SMatthew G. Knepley } 38439ece16SMatthew G. Knepley 39439ece16SMatthew G. Knepley /* 40439ece16SMatthew G. Knepley DMPlexRestoreFaces_Internal - Restores the array 41439ece16SMatthew G. Knepley */ 42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 43439ece16SMatthew G. Knepley { 44439ece16SMatthew G. Knepley PetscErrorCode ierr; 45439ece16SMatthew G. Knepley 46439ece16SMatthew G. Knepley PetscFunctionBegin; 47cd921712SStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 48439ece16SMatthew G. Knepley PetscFunctionReturn(0); 49439ece16SMatthew G. Knepley } 50439ece16SMatthew G. Knepley 51439ece16SMatthew G. Knepley /* 52439ece16SMatthew G. Knepley DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone 53439ece16SMatthew G. Knepley */ 54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 55439ece16SMatthew G. Knepley { 56439ece16SMatthew G. Knepley PetscInt *facesTmp; 57439ece16SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 58439ece16SMatthew G. Knepley PetscErrorCode ierr; 59439ece16SMatthew G. Knepley 60439ece16SMatthew G. Knepley PetscFunctionBegin; 61439ece16SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62cd921712SStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 63439ece16SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 6469291d52SBarry Smith if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 659f074e33SMatthew G Knepley switch (dim) { 66c49d9212SMatthew G. Knepley case 1: 67c49d9212SMatthew G. Knepley switch (coneSize) { 68c49d9212SMatthew G. Knepley case 2: 69c49d9212SMatthew G. Knepley if (faces) { 70c49d9212SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 71c49d9212SMatthew G. Knepley *faces = facesTmp; 72c49d9212SMatthew G. Knepley } 73c49d9212SMatthew G. Knepley if (numFaces) *numFaces = 2; 74c49d9212SMatthew G. Knepley if (faceSize) *faceSize = 1; 75c49d9212SMatthew G. Knepley break; 76c49d9212SMatthew G. Knepley default: 7799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 78c49d9212SMatthew G. Knepley } 79c49d9212SMatthew G. Knepley break; 809f074e33SMatthew G Knepley case 2: 819f074e33SMatthew G Knepley switch (coneSize) { 829f074e33SMatthew G Knepley case 3: 839a5b13a2SMatthew G Knepley if (faces) { 849a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 859a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 869a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 879a5b13a2SMatthew G Knepley *faces = facesTmp; 889a5b13a2SMatthew G Knepley } 899a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 909a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 919f074e33SMatthew G Knepley break; 929f074e33SMatthew G Knepley case 4: 939a5b13a2SMatthew G Knepley /* Vertices follow right hand rule */ 949a5b13a2SMatthew G Knepley if (faces) { 959a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 969a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 979a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[3]; 989a5b13a2SMatthew G Knepley facesTmp[6] = cone[3]; facesTmp[7] = cone[0]; 999a5b13a2SMatthew G Knepley *faces = facesTmp; 1009a5b13a2SMatthew G Knepley } 1019a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1029a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1039f074e33SMatthew G Knepley break; 1049f074e33SMatthew G Knepley default: 10599836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1069f074e33SMatthew G Knepley } 1079f074e33SMatthew G Knepley break; 1089f074e33SMatthew G Knepley case 3: 1099f074e33SMatthew G Knepley switch (coneSize) { 1109f074e33SMatthew G Knepley case 3: 1119a5b13a2SMatthew G Knepley if (faces) { 1129a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 1139a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 1149a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 1159a5b13a2SMatthew G Knepley *faces = facesTmp; 1169a5b13a2SMatthew G Knepley } 1179a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 1189a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1199f074e33SMatthew G Knepley break; 1209f074e33SMatthew G Knepley case 4: 1212e1b13c2SMatthew G. Knepley /* Vertices of first face follow right hand rule and normal points away from last vertex */ 1229a5b13a2SMatthew G Knepley if (faces) { 1232e1b13c2SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; 1242e1b13c2SMatthew G. Knepley facesTmp[3] = cone[0]; facesTmp[4] = cone[3]; facesTmp[5] = cone[1]; 1252e1b13c2SMatthew G. Knepley facesTmp[6] = cone[0]; facesTmp[7] = cone[2]; facesTmp[8] = cone[3]; 1262e1b13c2SMatthew G. Knepley facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3]; 1279a5b13a2SMatthew G Knepley *faces = facesTmp; 1289a5b13a2SMatthew G Knepley } 1299a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1309a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 3; 1319a5b13a2SMatthew G Knepley break; 1329a5b13a2SMatthew G Knepley case 8: 133e368ef20SMatthew G. Knepley /* 7--------6 134e368ef20SMatthew G. Knepley /| /| 135e368ef20SMatthew G. Knepley / | / | 136e368ef20SMatthew G. Knepley 4--------5 | 137e368ef20SMatthew G. Knepley | | | | 138e368ef20SMatthew G. Knepley | | | | 139e368ef20SMatthew G. Knepley | 1--------2 140e368ef20SMatthew G. Knepley | / | / 141e368ef20SMatthew G. Knepley |/ |/ 142e368ef20SMatthew G. Knepley 0--------3 143e368ef20SMatthew G. Knepley */ 1449a5b13a2SMatthew G Knepley if (faces) { 14551cfd6a4SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; /* Bottom */ 14651cfd6a4SMatthew G. Knepley facesTmp[4] = cone[4]; facesTmp[5] = cone[5]; facesTmp[6] = cone[6]; facesTmp[7] = cone[7]; /* Top */ 14751cfd6a4SMatthew G. Knepley facesTmp[8] = cone[0]; facesTmp[9] = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */ 14851cfd6a4SMatthew G. Knepley facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */ 14951cfd6a4SMatthew G. Knepley facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */ 15051cfd6a4SMatthew G. Knepley facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */ 1519a5b13a2SMatthew G Knepley *faces = facesTmp; 1529a5b13a2SMatthew G Knepley } 1539a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 6; 1549a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 4; 1559f074e33SMatthew G Knepley break; 1569f074e33SMatthew G Knepley default: 15799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1589f074e33SMatthew G Knepley } 1599f074e33SMatthew G Knepley break; 1609f074e33SMatthew G Knepley default: 16199836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 1629f074e33SMatthew G Knepley } 1639f074e33SMatthew G Knepley PetscFunctionReturn(0); 1649f074e33SMatthew G Knepley } 1659f074e33SMatthew G Knepley 16699836e0eSStefano Zampini /* 16799836e0eSStefano Zampini DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms) 16899836e0eSStefano Zampini */ 16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 17099836e0eSStefano Zampini { 17199836e0eSStefano Zampini PetscInt *facesTmp; 17299836e0eSStefano Zampini PetscInt maxConeSize, maxSupportSize; 17399836e0eSStefano Zampini PetscErrorCode ierr; 17499836e0eSStefano Zampini 17599836e0eSStefano Zampini PetscFunctionBegin; 17699836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17799836e0eSStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 17899836e0eSStefano Zampini ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 17999836e0eSStefano Zampini if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 18099836e0eSStefano Zampini switch (dim) { 18199836e0eSStefano Zampini case 1: 18299836e0eSStefano Zampini switch (coneSize) { 18399836e0eSStefano Zampini case 2: 18499836e0eSStefano Zampini if (faces) { 18599836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 18699836e0eSStefano Zampini *faces = facesTmp; 18799836e0eSStefano Zampini } 18899836e0eSStefano Zampini if (numFaces) *numFaces = 2; 18999836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 19099836e0eSStefano Zampini if (faceSize) *faceSize = 1; 19199836e0eSStefano Zampini break; 19299836e0eSStefano Zampini default: 19399836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 19499836e0eSStefano Zampini } 19599836e0eSStefano Zampini break; 19699836e0eSStefano Zampini case 2: 19799836e0eSStefano Zampini switch (coneSize) { 19899836e0eSStefano Zampini case 4: 19999836e0eSStefano Zampini if (faces) { 20099836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 20199836e0eSStefano Zampini facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; 20299836e0eSStefano Zampini facesTmp[4] = cone[0]; facesTmp[5] = cone[2]; 20399836e0eSStefano Zampini facesTmp[6] = cone[1]; facesTmp[7] = cone[3]; 20499836e0eSStefano Zampini *faces = facesTmp; 20599836e0eSStefano Zampini } 20699836e0eSStefano Zampini if (numFaces) *numFaces = 4; 20799836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 20899836e0eSStefano Zampini if (faceSize) *faceSize = 2; 20999836e0eSStefano Zampini break; 21099836e0eSStefano Zampini default: 21199836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 21299836e0eSStefano Zampini } 21399836e0eSStefano Zampini break; 21499836e0eSStefano Zampini case 3: 21599836e0eSStefano Zampini switch (coneSize) { 21699836e0eSStefano Zampini case 6: /* triangular prism */ 21799836e0eSStefano Zampini if (faces) { 21899836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = -1; /* Bottom */ 21999836e0eSStefano Zampini facesTmp[4] = cone[3]; facesTmp[5] = cone[4]; facesTmp[6] = cone[5]; facesTmp[7] = -1; /* Top */ 22099836e0eSStefano Zampini facesTmp[8] = cone[0]; facesTmp[9] = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */ 22199836e0eSStefano Zampini facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */ 22299836e0eSStefano Zampini facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */ 22399836e0eSStefano Zampini *faces = facesTmp; 22499836e0eSStefano Zampini } 22599836e0eSStefano Zampini if (numFaces) *numFaces = 5; 22699836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 22799836e0eSStefano Zampini if (faceSize) *faceSize = -4; 22899836e0eSStefano Zampini break; 22999836e0eSStefano Zampini default: 23099836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 23199836e0eSStefano Zampini } 23299836e0eSStefano Zampini break; 23399836e0eSStefano Zampini default: 23499836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 23599836e0eSStefano Zampini } 23699836e0eSStefano Zampini PetscFunctionReturn(0); 23799836e0eSStefano Zampini } 23899836e0eSStefano Zampini 23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24099836e0eSStefano Zampini { 24199836e0eSStefano Zampini PetscErrorCode ierr; 24299836e0eSStefano Zampini 24399836e0eSStefano Zampini PetscFunctionBegin; 24499836e0eSStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 24599836e0eSStefano Zampini PetscFunctionReturn(0); 24699836e0eSStefano Zampini } 24799836e0eSStefano Zampini 24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24999836e0eSStefano Zampini { 25099836e0eSStefano Zampini const PetscInt *cone = NULL; 25199836e0eSStefano Zampini PetscInt coneSize; 25299836e0eSStefano Zampini PetscErrorCode ierr; 25399836e0eSStefano Zampini 25499836e0eSStefano Zampini PetscFunctionBegin; 25599836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25799836e0eSStefano Zampini ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 25899836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr); 25999836e0eSStefano Zampini PetscFunctionReturn(0); 26099836e0eSStefano Zampini } 26199836e0eSStefano Zampini 2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */ 2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm) 2649f074e33SMatthew G Knepley { 265d4efc6f1SMatthew G. Knepley DMLabel subpointMap; 2669a5b13a2SMatthew G Knepley PetscHashIJKL faceTable; 2679a5b13a2SMatthew G Knepley PetscInt *pStart, *pEnd; 2689a5b13a2SMatthew G Knepley PetscInt cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d; 26999836e0eSStefano Zampini PetscInt coneSizeH = 0, faceSizeAllH = 0, numCellFacesH = 0, faceH, pMax = -1, dim, outerloop; 27099836e0eSStefano Zampini PetscInt cMax, fMax, eMax, vMax; 2719f074e33SMatthew G Knepley PetscErrorCode ierr; 2729f074e33SMatthew G Knepley 2739f074e33SMatthew G Knepley PetscFunctionBegin; 274c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 275d4efc6f1SMatthew G. Knepley /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */ 276d4efc6f1SMatthew G. Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 277d4efc6f1SMatthew G. Knepley if (subpointMap) ++cellDim; 2789a5b13a2SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2799a5b13a2SMatthew G Knepley ++depth; 2809a5b13a2SMatthew G Knepley ++cellDepth; 2819a5b13a2SMatthew G Knepley cellDim -= depth - cellDepth; 282dcca6d9dSJed Brown ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr); 2839a5b13a2SMatthew G Knepley for (d = depth-1; d >= faceDepth; --d) { 2849a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr); 2859f074e33SMatthew G Knepley } 2869a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr); 2879a5b13a2SMatthew G Knepley pEnd[faceDepth] = pStart[faceDepth]; 2889a5b13a2SMatthew G Knepley for (d = faceDepth-1; d >= 0; --d) { 2899a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2909f074e33SMatthew G Knepley } 29199836e0eSStefano Zampini cMax = fMax = eMax = vMax = PETSC_DETERMINE; 29299836e0eSStefano Zampini ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 29399836e0eSStefano Zampini if (cellDim == dim) { 29499836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 29599836e0eSStefano Zampini pMax = cMax; 29699836e0eSStefano Zampini } else if (cellDim == dim -1) { 29799836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr); 29899836e0eSStefano Zampini pMax = fMax; 29999836e0eSStefano Zampini } 30099836e0eSStefano Zampini pMax = pMax < 0 ? pEnd[cellDepth] : pMax; 30199836e0eSStefano Zampini if (pMax < pEnd[cellDepth]) { 30299836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 30399836e0eSStefano Zampini PetscInt numCellFacesT, faceSize, cf; 3049f074e33SMatthew G Knepley 30599836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr); 30699836e0eSStefano Zampini ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr); 30799836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 30899836e0eSStefano Zampini if (faceSize < 0) { 30999836e0eSStefano Zampini PetscInt *sizes, minv, maxv; 31099836e0eSStefano Zampini 31199836e0eSStefano Zampini /* count vertices of hybrid and non-hybrid faces */ 31299836e0eSStefano Zampini ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr); 31399836e0eSStefano Zampini for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */ 31499836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 31599836e0eSStefano Zampini PetscInt f; 31699836e0eSStefano Zampini 31799836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0); 31899836e0eSStefano Zampini } 31999836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr); 32099836e0eSStefano Zampini minv = sizes[0]; 32199836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesT-1, 0)]; 32299836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv); 32399836e0eSStefano Zampini faceSizeAll = minv; 32499836e0eSStefano Zampini ierr = PetscMemzero(sizes, numCellFacesH*sizeof(PetscInt));CHKERRQ(ierr); 32599836e0eSStefano Zampini for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */ 32699836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 32799836e0eSStefano Zampini PetscInt f; 32899836e0eSStefano Zampini 32999836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0); 33099836e0eSStefano Zampini } 33199836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr); 33299836e0eSStefano Zampini minv = sizes[0]; 33399836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)]; 33499836e0eSStefano Zampini ierr = PetscFree(sizes);CHKERRQ(ierr); 33599836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv); 33699836e0eSStefano Zampini faceSizeAllH = minv; 33799836e0eSStefano Zampini } else { /* the size of the faces in hybrid cells is the same */ 33899836e0eSStefano Zampini faceSizeAll = faceSizeAllH = faceSize; 33999836e0eSStefano Zampini } 34099836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 34199836e0eSStefano Zampini } else if (pEnd[cellDepth] > pStart[cellDepth]) { 34299836e0eSStefano Zampini ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr); 34399836e0eSStefano Zampini } 34499836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 34599836e0eSStefano Zampini 34699836e0eSStefano Zampini /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid grids 34799836e0eSStefano Zampini Then, faces for non-hybrid cells are numbered. 34899836e0eSStefano Zampini This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */ 34999836e0eSStefano Zampini ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 35099836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 35199836e0eSStefano Zampini PetscInt start, end; 35299836e0eSStefano Zampini 35399836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 35499836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 35599836e0eSStefano Zampini for (c = start; c < end; ++c) { 35699836e0eSStefano Zampini const PetscInt *cellFaces; 35799836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 35899836e0eSStefano Zampini 35999836e0eSStefano Zampini if (c < pMax) { 3609a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 3619a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 36299836e0eSStefano Zampini } else { /* Hybrid cell */ 36399836e0eSStefano Zampini const PetscInt *cone; 36499836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 36599836e0eSStefano Zampini 36699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 36799836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 36899836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 36999836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 37099836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 37199836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 37299836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 37399836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 37499836e0eSStefano Zampini } 37599836e0eSStefano Zampini faceSizeInc = faceSize; 3769f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 37799836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 37899836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 3799a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 380e8f14785SLisandro Dalcin PetscHashIter iter; 381e8f14785SLisandro Dalcin PetscBool missing; 3829f074e33SMatthew G Knepley 38399836e0eSStefano Zampini if (faceSizeInc == 2) { 3849a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 3859a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 38699836e0eSStefano Zampini key.k = PETSC_MAX_INT; 38799836e0eSStefano Zampini key.l = PETSC_MAX_INT; 3889a5b13a2SMatthew G Knepley } else { 38999836e0eSStefano Zampini key.i = cellFace[0]; 39099836e0eSStefano Zampini key.j = cellFace[1]; 39199836e0eSStefano Zampini key.k = cellFace[2]; 39299836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 393302440fdSBarry Smith ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 3949f074e33SMatthew G Knepley } 39599836e0eSStefano Zampini /* this check is redundant for non-hybrid meshes */ 39699836e0eSStefano Zampini if (faceSizeH != faceSizeAll) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAll); 397e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 398e8f14785SLisandro Dalcin if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 3999a5b13a2SMatthew G Knepley } 40099836e0eSStefano Zampini if (c < pMax) { 401439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 40299836e0eSStefano Zampini } else { 40399836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 40499836e0eSStefano Zampini } 40599836e0eSStefano Zampini } 40699836e0eSStefano Zampini } 40799836e0eSStefano Zampini pEnd[faceDepth] = face; 40899836e0eSStefano Zampini 40999836e0eSStefano Zampini /* Second pass for hybrid meshes: number hybrid faces */ 41099836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 41199836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 41299836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 41399836e0eSStefano Zampini 41499836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 41599836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 41699836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 41799836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 41899836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 41999836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 42099836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 42199836e0eSStefano Zampini PetscHashIJKLKey key; 42299836e0eSStefano Zampini PetscHashIter iter; 42399836e0eSStefano Zampini PetscBool missing; 42499836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 42599836e0eSStefano Zampini 42699836e0eSStefano Zampini if (faceSize == 2) { 42799836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 42899836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 42999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 43099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 43199836e0eSStefano Zampini } else { 43299836e0eSStefano Zampini key.i = cellFace[0]; 43399836e0eSStefano Zampini key.j = cellFace[1]; 43499836e0eSStefano Zampini key.k = cellFace[2]; 43599836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 43699836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 43799836e0eSStefano Zampini } 43899836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 43999836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 44099836e0eSStefano Zampini if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 44199836e0eSStefano Zampini } 44299836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 44399836e0eSStefano Zampini } 44499836e0eSStefano Zampini faceH = face - pEnd[faceDepth]; 44599836e0eSStefano Zampini if (faceH) { 44699836e0eSStefano Zampini if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth]; 44799836e0eSStefano Zampini else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth]; 44899836e0eSStefano Zampini else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim); 4499a5b13a2SMatthew G Knepley } 4509a5b13a2SMatthew G Knepley pEnd[faceDepth] = face; 4519a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 4529a5b13a2SMatthew G Knepley /* Count new points */ 4539a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4549a5b13a2SMatthew G Knepley numPoints += pEnd[d]-pStart[d]; 4559a5b13a2SMatthew G Knepley } 4569a5b13a2SMatthew G Knepley ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr); 4579a5b13a2SMatthew G Knepley /* Set cone sizes */ 4589a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4599a5b13a2SMatthew G Knepley PetscInt coneSize, p; 4609f074e33SMatthew G Knepley 4619a5b13a2SMatthew G Knepley if (d == faceDepth) { 4629a5b13a2SMatthew G Knepley /* I see no way to do this if we admit faces of different shapes */ 46399836e0eSStefano Zampini for (p = pStart[d]; p < pEnd[d]-faceH; ++p) { 4649a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 4659a5b13a2SMatthew G Knepley } 46699836e0eSStefano Zampini for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 46799836e0eSStefano Zampini ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 46899836e0eSStefano Zampini } 469a014044eSMatthew G Knepley } else if (d == cellDepth) { 470a014044eSMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 471a014044eSMatthew G Knepley /* Number of cell faces may be different from number of cell vertices*/ 47299836e0eSStefano Zampini if (p < pMax) { 473a014044eSMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr); 47499836e0eSStefano Zampini } else { 47599836e0eSStefano Zampini ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr); 47699836e0eSStefano Zampini } 477a014044eSMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 478a014044eSMatthew G Knepley } 4799a5b13a2SMatthew G Knepley } else { 4809a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 4819a5b13a2SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 4829a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 4839f074e33SMatthew G Knepley } 4849f074e33SMatthew G Knepley } 4859f074e33SMatthew G Knepley } 4869f074e33SMatthew G Knepley ierr = DMSetUp(idm);CHKERRQ(ierr); 4879f074e33SMatthew G Knepley /* Get face cones from subsets of cell vertices */ 48899836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 4899a5b13a2SMatthew G Knepley ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 4909a5b13a2SMatthew G Knepley for (d = depth; d > cellDepth; --d) { 4919a5b13a2SMatthew G Knepley const PetscInt *cone; 4929a5b13a2SMatthew G Knepley PetscInt p; 4939a5b13a2SMatthew G Knepley 4949a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 4959a5b13a2SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 4969a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr); 4979a5b13a2SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr); 4989a5b13a2SMatthew G Knepley ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr); 4999f074e33SMatthew G Knepley } 5009a5b13a2SMatthew G Knepley } 50199836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 50299836e0eSStefano Zampini PetscInt start, end; 5039f074e33SMatthew G Knepley 50499836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 50599836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 50699836e0eSStefano Zampini for (c = start; c < end; ++c) { 50799836e0eSStefano Zampini const PetscInt *cellFaces; 50899836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 50999836e0eSStefano Zampini 51099836e0eSStefano Zampini if (c < pMax) { 5119a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 5129a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 51399836e0eSStefano Zampini } else { 51499836e0eSStefano Zampini const PetscInt *cone; 51599836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 51699836e0eSStefano Zampini 51799836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 51899836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 51999836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 52099836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 52199836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 52299836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 52399836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 52499836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 52599836e0eSStefano Zampini } 52699836e0eSStefano Zampini faceSizeInc = faceSize; 5279f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 52899836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 5299a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 530e8f14785SLisandro Dalcin PetscHashIter iter; 531e8f14785SLisandro Dalcin PetscBool missing; 5329f074e33SMatthew G Knepley 53399836e0eSStefano Zampini if (faceSizeInc == 2) { 5349a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 5359a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 53699836e0eSStefano Zampini key.k = PETSC_MAX_INT; 53799836e0eSStefano Zampini key.l = PETSC_MAX_INT; 5389a5b13a2SMatthew G Knepley } else { 539e8f14785SLisandro Dalcin key.i = cellFace[0]; 540e8f14785SLisandro Dalcin key.j = cellFace[1]; 541e8f14785SLisandro Dalcin key.k = cellFace[2]; 54299836e0eSStefano Zampini key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 54399836e0eSStefano Zampini ierr = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr); 5449f074e33SMatthew G Knepley } 545e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 546735a0255SMatthew G. Knepley if (missing) { 5479a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 548e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 549735a0255SMatthew G. Knepley ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 5509a5b13a2SMatthew G Knepley } else { 5519a5b13a2SMatthew G Knepley const PetscInt *cone; 552735a0255SMatthew G. Knepley PetscInt coneSize, ornt, i, j, f; 5539f074e33SMatthew G Knepley 554e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 5559a5b13a2SMatthew G Knepley ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 5562e1b13c2SMatthew G. Knepley /* Orient face: Do not allow reverse orientation at the first vertex */ 5579f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 5589f074e33SMatthew G Knepley ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 5599a5b13a2SMatthew G Knepley if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize); 5609a5b13a2SMatthew G Knepley /* - First find the initial vertex */ 5619a5b13a2SMatthew G Knepley for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break; 5629a5b13a2SMatthew G Knepley /* - Try forward comparison */ 5639a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break; 5649a5b13a2SMatthew G Knepley if (j == faceSize) { 5659a5b13a2SMatthew G Knepley if ((faceSize == 2) && (i == 1)) ornt = -2; 5669a5b13a2SMatthew G Knepley else ornt = i; 5679a5b13a2SMatthew G Knepley } else { 5689a5b13a2SMatthew G Knepley /* - Try backward comparison */ 5699a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break; 5702e1b13c2SMatthew G. Knepley if (j == faceSize) { 5712e1b13c2SMatthew G. Knepley if (i == 0) ornt = -faceSize; 572dc1a705cSMatthew G. Knepley else ornt = -i; 5732e1b13c2SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation"); 5749a5b13a2SMatthew G Knepley } 5759a5b13a2SMatthew G Knepley ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 5769f074e33SMatthew G Knepley } 5779f074e33SMatthew G Knepley } 57899836e0eSStefano Zampini if (c < pMax) { 579439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 58099836e0eSStefano Zampini } else { 58199836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 5829f074e33SMatthew G Knepley } 58399836e0eSStefano Zampini } 58499836e0eSStefano Zampini } 58599836e0eSStefano Zampini /* Second pass for hybrid meshes: orient hybrid faces */ 58699836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 58799836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 58899836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 58999836e0eSStefano Zampini 59099836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 59199836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 59299836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 59399836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 59499836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 59599836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 59699836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 59799836e0eSStefano Zampini PetscHashIJKLKey key; 59899836e0eSStefano Zampini PetscHashIter iter; 59999836e0eSStefano Zampini PetscBool missing; 60099836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 60199836e0eSStefano Zampini 60299836e0eSStefano Zampini if (faceSize == 2) { 60399836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 60499836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 60599836e0eSStefano Zampini key.k = PETSC_MAX_INT; 60699836e0eSStefano Zampini key.l = PETSC_MAX_INT; 60799836e0eSStefano Zampini } else { 60899836e0eSStefano Zampini key.i = cellFace[0]; 60999836e0eSStefano Zampini key.j = cellFace[1]; 61099836e0eSStefano Zampini key.k = cellFace[2]; 61199836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 61299836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 61399836e0eSStefano Zampini } 61499836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 61599836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 61699836e0eSStefano Zampini if (missing) { 61799836e0eSStefano Zampini ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 61899836e0eSStefano Zampini ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 61999836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 62099836e0eSStefano Zampini } else { 62199836e0eSStefano Zampini const PetscInt *cone; 62299836e0eSStefano Zampini PetscInt coneSize, ornt, i, j, f; 62399836e0eSStefano Zampini 62499836e0eSStefano Zampini ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 62599836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 62699836e0eSStefano Zampini /* Orient face: Do not allow reverse orientation at the first vertex */ 62799836e0eSStefano Zampini ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 62899836e0eSStefano Zampini ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 62999836e0eSStefano Zampini if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH); 63099836e0eSStefano Zampini /* - First find the initial vertex */ 63199836e0eSStefano Zampini for (i = 0; i < faceSizeH; ++i) if (cellFace[0] == cone[i]) break; 63299836e0eSStefano Zampini /* - Try forward comparison */ 63399836e0eSStefano Zampini for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+j)%faceSizeH]) break; 63499836e0eSStefano Zampini if (j == faceSizeH) { 63599836e0eSStefano Zampini if ((faceSizeH == 2) && (i == 1)) ornt = -2; 63699836e0eSStefano Zampini else ornt = i; 63799836e0eSStefano Zampini } else { 63899836e0eSStefano Zampini /* - Try backward comparison */ 63999836e0eSStefano Zampini for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+faceSizeH-j)%faceSizeH]) break; 64099836e0eSStefano Zampini if (j == faceSizeH) { 64199836e0eSStefano Zampini if (i == 0) ornt = -faceSizeH; 64299836e0eSStefano Zampini else ornt = -i; 64399836e0eSStefano Zampini } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation"); 64499836e0eSStefano Zampini } 64599836e0eSStefano Zampini ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 64699836e0eSStefano Zampini } 64799836e0eSStefano Zampini } 64899836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 64999836e0eSStefano Zampini } 65099836e0eSStefano Zampini if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]); 651c907b753SJed Brown ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 6529a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 6536551a8c7SMatthew G. Knepley ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 65499836e0eSStefano Zampini ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 6559a5b13a2SMatthew G Knepley ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr); 6569a5b13a2SMatthew G Knepley ierr = DMPlexStratify(idm);CHKERRQ(ierr); 6579f074e33SMatthew G Knepley PetscFunctionReturn(0); 6589f074e33SMatthew G Knepley } 6599f074e33SMatthew G Knepley 660fa01033eSVaclav Hapla PetscErrorCode DMPlexOrientCell(DM dm, PetscInt p, PetscInt masterConeSize, const PetscInt masterCone[]) 661fa01033eSVaclav Hapla { 66267aa0e3dSVaclav Hapla PetscInt coneSize; 66367aa0e3dSVaclav Hapla PetscInt start1=0; 66467aa0e3dSVaclav Hapla PetscBool reverse1=PETSC_FALSE; 665a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 666b8e38d09SVaclav Hapla PetscErrorCode ierr; 667b8e38d09SVaclav Hapla 668b8e38d09SVaclav Hapla PetscFunctionBegin; 669b8e38d09SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 670b8e38d09SVaclav Hapla if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */ 671b8e38d09SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 672b8e38d09SVaclav Hapla ierr = DMPlexFixFaceOrientations_Orient_Private(coneSize, masterConeSize, masterCone, cone, &start1, &reverse1);CHKERRQ(ierr); 673b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG) 674b8e38d09SVaclav Hapla if (PetscUnlikely(cone[start1] != masterCone[0])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[0]", start1, cone[start1], masterCone[0]); 675b8e38d09SVaclav Hapla #endif 676b8e38d09SVaclav Hapla ierr = DMPlexOrientCell_Internal(dm, p, start1, reverse1);CHKERRQ(ierr); 677b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG) 67867aa0e3dSVaclav Hapla { 67967aa0e3dSVaclav Hapla PetscInt c; 680b8e38d09SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 681b8e38d09SVaclav Hapla for (c = 0; c < 2; c++) { 682b8e38d09SVaclav Hapla if (PetscUnlikely(cone[c] != masterCone[c])) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[%d]", c, cone[c], masterCone[c], c); 683b8e38d09SVaclav Hapla } 68467aa0e3dSVaclav Hapla } 685b8e38d09SVaclav Hapla #endif 686b8e38d09SVaclav Hapla PetscFunctionReturn(0); 687b8e38d09SVaclav Hapla } 688b8e38d09SVaclav Hapla 6890fe46fbbSVaclav Hapla PetscErrorCode DMPlexOrientCell_Internal(DM dm, PetscInt p, PetscInt start1, PetscBool reverse1) 690b8e38d09SVaclav Hapla { 691fa01033eSVaclav Hapla PetscInt i, j, k, maxConeSize, coneSize, coneConeSize, supportSize, supportConeSize; 692b8e38d09SVaclav Hapla PetscInt start0, start; 693b8e38d09SVaclav Hapla PetscBool reverse0, reverse; 694fa01033eSVaclav Hapla PetscInt newornt; 695a0d42dbcSVaclav Hapla const PetscInt *cone=NULL, *support=NULL, *supportCone=NULL, *ornts=NULL; 696a0d42dbcSVaclav Hapla PetscInt *newcone=NULL, *newornts=NULL; 697fa01033eSVaclav Hapla PetscErrorCode ierr; 698fa01033eSVaclav Hapla 699fa01033eSVaclav Hapla PetscFunctionBegin; 700b8e38d09SVaclav Hapla if (!start1 && !reverse1) PetscFunctionReturn(0); 701fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 702fa01033eSVaclav Hapla if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */ 703fa01033eSVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 704b8e38d09SVaclav Hapla ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 705fa01033eSVaclav Hapla /* permute p's cone and orientations */ 706fa01033eSVaclav Hapla ierr = DMPlexGetConeOrientation(dm, p, &ornts);CHKERRQ(ierr); 707fa01033eSVaclav Hapla ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr); 708fa01033eSVaclav Hapla ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr); 709fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, cone, start1, reverse1, newcone);CHKERRQ(ierr); 710fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, ornts, start1, reverse1, newornts);CHKERRQ(ierr); 711fa01033eSVaclav Hapla /* if direction of p (face) is flipped, flip also p's cone points (edges) */ 712fa01033eSVaclav Hapla if (reverse1) { 713fa01033eSVaclav Hapla for (i=0; i<coneSize; i++) { 714fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, cone[i], &coneConeSize);CHKERRQ(ierr); 715fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Translate_Private(newornts[i], &start0, &reverse0);CHKERRQ(ierr); 716fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Combine_Private(coneConeSize, start0, reverse0, 1, PETSC_FALSE, &start, &reverse);CHKERRQ(ierr); 717fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneConeSize, start, reverse, &newornts[i]);CHKERRQ(ierr); 718fa01033eSVaclav Hapla } 719fa01033eSVaclav Hapla } 720fa01033eSVaclav Hapla ierr = DMPlexSetConeOrientation(dm, p, newornts);CHKERRQ(ierr); 721fa01033eSVaclav Hapla /* fix oriention of p within cones of p's support points */ 722fa01033eSVaclav Hapla ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 723fa01033eSVaclav Hapla ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 724fa01033eSVaclav Hapla for (j=0; j<supportSize; j++) { 725fa01033eSVaclav Hapla ierr = DMPlexGetCone(dm, support[j], &supportCone);CHKERRQ(ierr); 726fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, support[j], &supportConeSize);CHKERRQ(ierr); 727fa01033eSVaclav Hapla ierr = DMPlexGetConeOrientation(dm, support[j], &ornts);CHKERRQ(ierr); 728fa01033eSVaclav Hapla for (k=0; k<supportConeSize; k++) { 729fa01033eSVaclav Hapla if (supportCone[k] != p) continue; 730fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Translate_Private(ornts[k], &start0, &reverse0);CHKERRQ(ierr); 731fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Combine_Private(coneSize, start0, reverse0, start1, reverse1, &start, &reverse);CHKERRQ(ierr); 732fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneSize, start, reverse, &newornt);CHKERRQ(ierr); 733fa01033eSVaclav Hapla ierr = DMPlexInsertConeOrientation(dm, support[j], k, newornt);CHKERRQ(ierr); 734fa01033eSVaclav Hapla } 735fa01033eSVaclav Hapla } 736fa01033eSVaclav Hapla /* rewrite cone */ 737fa01033eSVaclav Hapla ierr = DMPlexSetCone(dm, p, newcone);CHKERRQ(ierr); 738fa01033eSVaclav Hapla ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr); 739fa01033eSVaclav Hapla ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr); 740fa01033eSVaclav Hapla PetscFunctionReturn(0); 741fa01033eSVaclav Hapla } 742fa01033eSVaclav Hapla 743f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[]) 744f80536cbSVaclav Hapla { 745f80536cbSVaclav Hapla PetscInt nleaves; 746f80536cbSVaclav Hapla PetscInt nranks; 747a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 748a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL, *rmine=NULL, *rremote=NULL; 749f80536cbSVaclav Hapla PetscInt n, o, r; 750f80536cbSVaclav Hapla PetscErrorCode ierr; 751f80536cbSVaclav Hapla 752f80536cbSVaclav Hapla PetscFunctionBegin; 753f80536cbSVaclav Hapla ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr); 754f80536cbSVaclav Hapla nleaves = roffset[nranks]; 755f80536cbSVaclav Hapla ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr); 756f80536cbSVaclav Hapla for (r=0; r<nranks; r++) { 757f80536cbSVaclav Hapla /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote 758f80536cbSVaclav Hapla - to unify order with the other side */ 759f80536cbSVaclav Hapla o = roffset[r]; 760f80536cbSVaclav Hapla n = roffset[r+1] - o; 761f80536cbSVaclav Hapla ierr = PetscMemcpy(&(*rmine1)[o], &rmine[o], n*sizeof(PetscInt));CHKERRQ(ierr); 762f80536cbSVaclav Hapla ierr = PetscMemcpy(&(*rremote1)[o], &rremote[o], n*sizeof(PetscInt));CHKERRQ(ierr); 763f80536cbSVaclav Hapla ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr); 764f80536cbSVaclav Hapla } 765f80536cbSVaclav Hapla PetscFunctionReturn(0); 766f80536cbSVaclav Hapla } 767f80536cbSVaclav Hapla 768bba29ab8SVaclav Hapla PetscErrorCode DMPlexOrientInterface(DM dm) 7692e745bdaSMatthew G. Knepley { 770a0d42dbcSVaclav Hapla PetscSF sf=NULL; 771cae7fe92SVaclav Hapla PetscInt (*roots)[2], (*leaves)[2]; 7728a650c75SVaclav Hapla PetscMPIInt (*rootsRanks)[2], (*leavesRanks)[2]; 773a0d42dbcSVaclav Hapla const PetscInt *locals=NULL; 774a0d42dbcSVaclav Hapla const PetscSFNode *remotes=NULL; 7758a650c75SVaclav Hapla PetscInt nroots, nleaves, p, c; 776f80536cbSVaclav Hapla PetscInt nranks, n, o, r; 777a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 778a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL; 779a0d42dbcSVaclav Hapla PetscInt *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */ 780a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 781adeface4SVaclav Hapla PetscInt coneSize, ind0; 7822e745bdaSMatthew G. Knepley MPI_Comm comm; 7832e745bdaSMatthew G. Knepley PetscMPIInt rank; 7842e745bdaSMatthew G. Knepley PetscInt debug = 0; 7852e745bdaSMatthew G. Knepley PetscErrorCode ierr; 7862e745bdaSMatthew G. Knepley 7872e745bdaSMatthew G. Knepley PetscFunctionBegin; 788df6a9fadSVaclav Hapla ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 7892e745bdaSMatthew G. Knepley ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr); 7903ede9f65SMatthew G. Knepley if (nroots < 0) PetscFunctionReturn(0); 791f80536cbSVaclav Hapla ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 792f80536cbSVaclav Hapla ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr); 793dc21a0bfSVaclav Hapla #if defined(PETSC_USE_DEBUG) 794dc21a0bfSVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr); 795dc21a0bfSVaclav Hapla ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr); 796dc21a0bfSVaclav Hapla #endif 797f80536cbSVaclav Hapla ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr); 7988a650c75SVaclav Hapla ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr); 7992e745bdaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 8002e745bdaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8012e745bdaSMatthew G. Knepley if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Roots\n");CHKERRQ(ierr);} 8029e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8039e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8049e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 8052e745bdaSMatthew G. Knepley /* Translate all points to root numbering */ 8068a650c75SVaclav Hapla for (c = 0; c < 2; c++) { 8078a650c75SVaclav Hapla if (coneSize > 1) { 8088a650c75SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 8098a650c75SVaclav Hapla if (ind0 < 0) { 8108a650c75SVaclav Hapla roots[p][c] = cone[c]; 8118a650c75SVaclav Hapla rootsRanks[p][c] = rank; 812c8148b97SVaclav Hapla } else { 8138a650c75SVaclav Hapla roots[p][c] = remotes[ind0].index; 8148a650c75SVaclav Hapla rootsRanks[p][c] = remotes[ind0].rank; 8158a650c75SVaclav Hapla } 8168a650c75SVaclav Hapla } else { 8178a650c75SVaclav Hapla roots[p][c] = -1; 8188a650c75SVaclav Hapla rootsRanks[p][c] = -1; 8192e745bdaSMatthew G. Knepley } 8202e745bdaSMatthew G. Knepley } 8218a650c75SVaclav Hapla } 8228a650c75SVaclav Hapla if (debug) { 8238a650c75SVaclav Hapla for (p = 0; p < nroots; ++p) { 8248a650c75SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8258a650c75SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 8268a650c75SVaclav Hapla if (coneSize > 1) { 8278a650c75SVaclav Hapla ierr = PetscSynchronizedPrintf(comm, "[%d] %D: cone=[%D %D] roots=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], roots[p][0], roots[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr); 8288a650c75SVaclav Hapla } 8298a650c75SVaclav Hapla } 8308a650c75SVaclav Hapla ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8318a650c75SVaclav Hapla } 8329e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8338ccb905dSVaclav Hapla for (c = 0; c < 2; c++) { 8348ccb905dSVaclav Hapla leaves[p][c] = -2; 8358ccb905dSVaclav Hapla leavesRanks[p][c] = -2; 8368ccb905dSVaclav Hapla } 837c8148b97SVaclav Hapla } 8382e745bdaSMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8398a650c75SVaclav Hapla ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 8402e745bdaSMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8418a650c75SVaclav Hapla ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 842c8148b97SVaclav Hapla if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 843c8148b97SVaclav Hapla if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referred leaves\n");CHKERRQ(ierr);} 8449e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8459e24d8a0SVaclav Hapla if (leaves[p][0] < 0) continue; 8469e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8479e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 848ea211068SVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: cone=[%D %D] leaves=[%D %D] roots=[%D %D] leavesRanks=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], leaves[p][0], leaves[p][1], roots[p][0], roots[p][1], leavesRanks[p][0], leavesRanks[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);} 849ea211068SVaclav Hapla if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][0] != rootsRanks[p][0])) { 850f80536cbSVaclav Hapla PetscInt masterCone[2]; 851f80536cbSVaclav Hapla /* Translate these two cone points back to leave numbering */ 852f80536cbSVaclav Hapla for (c = 0; c < 2; c++) { 853def636c8SVaclav Hapla if (leavesRanks[p][c] == rank) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - remote rank of point %D is the same rank",leavesRanks[p][c]); 854f80536cbSVaclav Hapla /* Find index of rank leavesRanks[p][c] among remote ranks */ 855f80536cbSVaclav Hapla /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */ 856f80536cbSVaclav Hapla ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr); 857f80536cbSVaclav Hapla if (PetscUnlikely(r < 0)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - rank %D not found among remote ranks",leavesRanks[p][c]); 858f80536cbSVaclav Hapla /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */ 859f80536cbSVaclav Hapla o = roffset[r]; 860f80536cbSVaclav Hapla n = roffset[r+1] - o; 861f80536cbSVaclav Hapla ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr); 862adeface4SVaclav Hapla if (PetscUnlikely(ind0 < 0)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "No cone point of %D is connected to (%D, %D) - it seems there is missing connection in point SF!",p,ranks[r],leaves[p][c]); 863f80536cbSVaclav Hapla /* Get the corresponding local point */ 864f80536cbSVaclav Hapla masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr); 865f80536cbSVaclav Hapla } 866f80536cbSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: masterCone=[%D %D]\n", rank, p, masterCone[0], masterCone[1]);CHKERRQ(ierr);} 867f80536cbSVaclav Hapla /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 868f80536cbSVaclav Hapla ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr); 86923aaf07bSVaclav Hapla } 8702e745bdaSMatthew G. Knepley } 871adeface4SVaclav Hapla #if defined(PETSC_USE_DEBUG) 872adeface4SVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr); 873adeface4SVaclav Hapla for (r = 0; r < nleaves; ++r) { 874adeface4SVaclav Hapla p = locals[r]; 875adeface4SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 876adeface4SVaclav Hapla if (!coneSize) continue; 877adeface4SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 878adeface4SVaclav Hapla for (c = 0; c < 2; c++) { 879adeface4SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 880adeface4SVaclav Hapla if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing its cone point cone[%D] = %D!", p, c, cone[c]); 881adeface4SVaclav Hapla if (leaves[p][c] != remotes[ind0].index || leavesRanks[p][c] != remotes[ind0].rank) { 882adeface4SVaclav Hapla if (leavesRanks[p][c] == rank) { 883adeface4SVaclav Hapla PetscInt ind1; 884adeface4SVaclav Hapla ierr = PetscFindInt(leaves[p][c], nleaves, locals, &ind1);CHKERRQ(ierr); 885adeface4SVaclav Hapla if (ind1 < 0) { 886adeface4SVaclav Hapla SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). The latter was not even found among the local SF points - it is probably broken!", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]); 887adeface4SVaclav Hapla } else { 888adeface4SVaclav Hapla SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced %D --> (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leaves[p][c], remotes[ind1].rank, remotes[ind1].index); 889adeface4SVaclav Hapla } 890adeface4SVaclav Hapla } else { 891adeface4SVaclav Hapla SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]); 892adeface4SVaclav Hapla } 893adeface4SVaclav Hapla } 894adeface4SVaclav Hapla } 895adeface4SVaclav Hapla } 896adeface4SVaclav Hapla #endif 8972e745bdaSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 8988a650c75SVaclav Hapla ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr); 8997c7bb832SVaclav Hapla ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr); 9002e745bdaSMatthew G. Knepley PetscFunctionReturn(0); 9012e745bdaSMatthew G. Knepley } 9022e745bdaSMatthew G. Knepley 9037bffde78SMichael Lange /* This interpolates the PointSF in parallel following local interpolation */ 9047bffde78SMichael Lange static PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF, PetscInt depth) 9057bffde78SMichael Lange { 9069852e123SBarry Smith PetscMPIInt size, rank; 9077bffde78SMichael Lange PetscInt p, c, d, dof, offset; 908ffd6914dSSatish Balay PetscInt numLeaves, numRoots, candidatesSize, candidatesRemoteSize; 9097bffde78SMichael Lange const PetscInt *localPoints; 9107bffde78SMichael Lange const PetscSFNode *remotePoints; 9117bffde78SMichael Lange PetscSFNode *candidates, *candidatesRemote, *claims; 9127bffde78SMichael Lange PetscSection candidateSection, candidateSectionRemote, claimSection; 913e8f14785SLisandro Dalcin PetscHMapI leafhash; 914e8f14785SLisandro Dalcin PetscHMapIJ roothash; 9157bffde78SMichael Lange PetscHashIJKey key; 9167bffde78SMichael Lange PetscErrorCode ierr; 9177bffde78SMichael Lange 9187bffde78SMichael Lange PetscFunctionBegin; 9199852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 9207bffde78SMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 9217bffde78SMichael Lange ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 9229852e123SBarry Smith if (size < 2 || numRoots < 0) PetscFunctionReturn(0); 92325afeb17SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 9247bffde78SMichael Lange /* Build hashes of points in the SF for efficient lookup */ 925e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr); 926e8f14785SLisandro Dalcin ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr); 9277bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 928e8f14785SLisandro Dalcin ierr = PetscHMapISet(leafhash, localPoints[p], p);CHKERRQ(ierr); 929e8f14785SLisandro Dalcin key.i = remotePoints[p].index; 930e8f14785SLisandro Dalcin key.j = remotePoints[p].rank; 931e8f14785SLisandro Dalcin ierr = PetscHMapIJSet(roothash, key, p);CHKERRQ(ierr); 9327bffde78SMichael Lange } 9337bffde78SMichael Lange /* Build a section / SFNode array of candidate points in the single-level adjacency of leaves, 9347bffde78SMichael Lange where each candidate is defined by the root entry for the other vertex that defines the edge. */ 9357bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr); 9367bffde78SMichael Lange ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr); 9377bffde78SMichael Lange { 938ffd6914dSSatish Balay PetscInt leaf, root, idx, a, *adj = NULL; 9397bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 9407bffde78SMichael Lange PetscInt adjSize = PETSC_DETERMINE; 9417bffde78SMichael Lange ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr); 9427bffde78SMichael Lange for (a = 0; a < adjSize; ++a) { 943e8f14785SLisandro Dalcin ierr = PetscHMapIGet(leafhash, adj[a], &leaf);CHKERRQ(ierr); 9447bffde78SMichael Lange if (leaf >= 0) {ierr = PetscSectionAddDof(candidateSection, localPoints[p], 1);CHKERRQ(ierr);} 9457bffde78SMichael Lange } 9467bffde78SMichael Lange } 9477bffde78SMichael Lange ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr); 9487bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr); 9497bffde78SMichael Lange ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr); 9507bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 9517bffde78SMichael Lange PetscInt adjSize = PETSC_DETERMINE; 9527bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, localPoints[p], &offset);CHKERRQ(ierr); 9537bffde78SMichael Lange ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr); 9547bffde78SMichael Lange for (idx = 0, a = 0; a < adjSize; ++a) { 955e8f14785SLisandro Dalcin ierr = PetscHMapIGet(leafhash, adj[a], &root);CHKERRQ(ierr); 9567bffde78SMichael Lange if (root >= 0) candidates[offset+idx++] = remotePoints[root]; 9577bffde78SMichael Lange } 9587bffde78SMichael Lange } 9597bffde78SMichael Lange ierr = PetscFree(adj);CHKERRQ(ierr); 9607bffde78SMichael Lange } 9617bffde78SMichael Lange /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */ 9627bffde78SMichael Lange { 9637bffde78SMichael Lange PetscSF sfMulti, sfInverse, sfCandidates; 9647bffde78SMichael Lange PetscInt *remoteOffsets; 9657bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 9667bffde78SMichael Lange ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr); 9677bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr); 9687bffde78SMichael Lange ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr); 9697bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr); 9707bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr); 9717bffde78SMichael Lange ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr); 9727bffde78SMichael Lange ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 9737bffde78SMichael Lange ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 9747bffde78SMichael Lange ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr); 9757bffde78SMichael Lange ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr); 9767bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 9777bffde78SMichael Lange } 9787bffde78SMichael Lange /* Walk local roots and check for each remote candidate whether we know all required points, 9797bffde78SMichael Lange either from owning it or having a root entry in the point SF. If we do we place a claim 9807bffde78SMichael Lange by replacing the vertex number with our edge ID. */ 9817bffde78SMichael Lange { 9827bffde78SMichael Lange PetscInt idx, root, joinSize, vertices[2]; 9837bffde78SMichael Lange const PetscInt *rootdegree, *join = NULL; 9847bffde78SMichael Lange ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr); 9857bffde78SMichael Lange ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr); 9867bffde78SMichael Lange /* Loop remote edge connections and put in a claim if both vertices are known */ 9877bffde78SMichael Lange for (idx = 0, p = 0; p < numRoots; ++p) { 9887bffde78SMichael Lange for (d = 0; d < rootdegree[p]; ++d) { 9897bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr); 9907bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr); 9917bffde78SMichael Lange for (c = 0; c < dof; ++c) { 9927bffde78SMichael Lange /* We own both vertices, so we claim the edge by replacing vertex with edge */ 9937bffde78SMichael Lange if (candidatesRemote[offset+c].rank == rank) { 9947bffde78SMichael Lange vertices[0] = p; vertices[1] = candidatesRemote[offset+c].index; 9957bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 9967bffde78SMichael Lange if (joinSize == 1) candidatesRemote[offset+c].index = join[0]; 9977bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 9987bffde78SMichael Lange continue; 9997bffde78SMichael Lange } 10007bffde78SMichael Lange /* If we own one vertex and share a root with the other, we claim it */ 1001e8f14785SLisandro Dalcin key.i = candidatesRemote[offset+c].index; 1002e8f14785SLisandro Dalcin key.j = candidatesRemote[offset+c].rank; 1003e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 10047bffde78SMichael Lange if (root >= 0) { 10057bffde78SMichael Lange vertices[0] = p; vertices[1] = localPoints[root]; 10067bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 10077bffde78SMichael Lange if (joinSize == 1) { 10087bffde78SMichael Lange candidatesRemote[offset+c].index = join[0]; 10097bffde78SMichael Lange candidatesRemote[offset+c].rank = rank; 10107bffde78SMichael Lange } 10117bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 10127bffde78SMichael Lange } 10137bffde78SMichael Lange } 10147bffde78SMichael Lange idx++; 10157bffde78SMichael Lange } 10167bffde78SMichael Lange } 10177bffde78SMichael Lange } 10187bffde78SMichael Lange /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */ 10197bffde78SMichael Lange { 10207bffde78SMichael Lange PetscSF sfMulti, sfClaims, sfPointNew; 1021e8f14785SLisandro Dalcin PetscHMapI claimshash; 10227bffde78SMichael Lange PetscInt size, pStart, pEnd, root, joinSize, numLocalNew; 10237bffde78SMichael Lange PetscInt *remoteOffsets, *localPointsNew, vertices[2]; 1024ffd6914dSSatish Balay const PetscInt *join = NULL; 10257bffde78SMichael Lange PetscSFNode *remotePointsNew; 10267bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 10277bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr); 10287bffde78SMichael Lange ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr); 10297bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr); 10307bffde78SMichael Lange ierr = PetscSectionGetStorageSize(claimSection, &size);CHKERRQ(ierr); 10317bffde78SMichael Lange ierr = PetscMalloc1(size, &claims);CHKERRQ(ierr); 10327bffde78SMichael Lange ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 10337bffde78SMichael Lange ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 10347bffde78SMichael Lange ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr); 10357bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 10367bffde78SMichael Lange /* Walk the original section of local supports and add an SF entry for each updated item */ 1037e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr); 10387bffde78SMichael Lange for (p = 0; p < numRoots; ++p) { 10397bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr); 10407bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr); 10417bffde78SMichael Lange for (d = 0; d < dof; ++d) { 10427bffde78SMichael Lange if (candidates[offset+d].index != claims[offset+d].index) { 1043e8f14785SLisandro Dalcin key.i = candidates[offset+d].index; 1044e8f14785SLisandro Dalcin key.j = candidates[offset+d].rank; 1045e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 10467bffde78SMichael Lange if (root >= 0) { 10477bffde78SMichael Lange vertices[0] = p; vertices[1] = localPoints[root]; 10487bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 1049e8f14785SLisandro Dalcin if (joinSize == 1) {ierr = PetscHMapISet(claimshash, join[0], offset+d);CHKERRQ(ierr);} 10507bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 10517bffde78SMichael Lange } 10527bffde78SMichael Lange } 10537bffde78SMichael Lange } 10547bffde78SMichael Lange } 10557bffde78SMichael Lange /* Create new pointSF from hashed claims */ 1056e8f14785SLisandro Dalcin ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr); 10577bffde78SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 10587bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr); 10597bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr); 10607bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 10617bffde78SMichael Lange localPointsNew[p] = localPoints[p]; 10627bffde78SMichael Lange remotePointsNew[p].index = remotePoints[p].index; 10637bffde78SMichael Lange remotePointsNew[p].rank = remotePoints[p].rank; 10647bffde78SMichael Lange } 1065f3190fc2SToby Isaac p = numLeaves; 1066e8f14785SLisandro Dalcin ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr); 1067f3190fc2SToby Isaac ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr); 10687bffde78SMichael Lange for (p = numLeaves; p < numLeaves + numLocalNew; ++p) { 1069e8f14785SLisandro Dalcin ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr); 10707bffde78SMichael Lange remotePointsNew[p] = claims[offset]; 10717bffde78SMichael Lange } 10727bffde78SMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr); 10737bffde78SMichael Lange ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 10747bffde78SMichael Lange ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr); 10757bffde78SMichael Lange ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr); 1076e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr); 10777bffde78SMichael Lange } 1078e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr); 1079e8f14785SLisandro Dalcin ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr); 10807bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr); 10817bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr); 10827bffde78SMichael Lange ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr); 10837bffde78SMichael Lange ierr = PetscFree(candidates);CHKERRQ(ierr); 10847bffde78SMichael Lange ierr = PetscFree(candidatesRemote);CHKERRQ(ierr); 10857bffde78SMichael Lange ierr = PetscFree(claims);CHKERRQ(ierr); 108625afeb17SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 10877bffde78SMichael Lange PetscFunctionReturn(0); 10887bffde78SMichael Lange } 10897bffde78SMichael Lange 10900c795ddcSMatthew G. Knepley /*@C 109180330477SMatthew G. Knepley DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc. 109280330477SMatthew G. Knepley 109380330477SMatthew G. Knepley Collective on DM 109480330477SMatthew G. Knepley 1095e56d480eSMatthew G. Knepley Input Parameters: 1096e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices 109710a67516SMatthew G. Knepley - dmInt - The interpolated DM 109880330477SMatthew G. Knepley 109980330477SMatthew G. Knepley Output Parameter: 11004e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object 110180330477SMatthew G. Knepley 110280330477SMatthew G. Knepley Level: intermediate 110380330477SMatthew G. Knepley 110495452b02SPatrick Sanan Notes: 110595452b02SPatrick Sanan It does not copy over the coordinates. 110643eeeb2dSStefano Zampini 110780330477SMatthew G. Knepley .keywords: mesh 110843eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 110980330477SMatthew G. Knepley @*/ 11109f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt) 11119f074e33SMatthew G Knepley { 11129a5b13a2SMatthew G Knepley DM idm, odm = dm; 11137bffde78SMichael Lange PetscSF sfPoint; 11142e1b13c2SMatthew G. Knepley PetscInt depth, dim, d; 111510a67516SMatthew G. Knepley const char *name; 1116b325530aSVaclav Hapla PetscBool flg=PETSC_TRUE; 11179f074e33SMatthew G Knepley PetscErrorCode ierr; 11189f074e33SMatthew G Knepley 11199f074e33SMatthew G Knepley PetscFunctionBegin; 112010a67516SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 112110a67516SMatthew G. Knepley PetscValidPointer(dmInt, 2); 1122a72f3261SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 11232e1b13c2SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1124c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1125b21b8912SMatthew G. Knepley if ((depth == dim) || (dim <= 1)) { 112676b791aaSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 112776b791aaSMatthew G. Knepley idm = dm; 1128b21b8912SMatthew G. Knepley } else { 11299a5b13a2SMatthew G Knepley for (d = 1; d < dim; ++d) { 11309a5b13a2SMatthew G Knepley /* Create interpolated mesh */ 113110a67516SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr); 11329a5b13a2SMatthew G Knepley ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr); 1133c73cfb54SMatthew G. Knepley ierr = DMSetDimension(idm, dim);CHKERRQ(ierr); 11347bffde78SMichael Lange if (depth > 0) { 11357bffde78SMichael Lange ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr); 11367bffde78SMichael Lange ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr); 11377bffde78SMichael Lange ierr = DMPlexInterpolatePointSF(idm, sfPoint, depth);CHKERRQ(ierr); 11387bffde78SMichael Lange } 11399a5b13a2SMatthew G Knepley if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);} 11409a5b13a2SMatthew G Knepley odm = idm; 11419f074e33SMatthew G Knepley } 114210a67516SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) dm, &name);CHKERRQ(ierr); 114310a67516SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) idm, name);CHKERRQ(ierr); 114410a67516SMatthew G. Knepley ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr); 114510a67516SMatthew G. Knepley ierr = DMCopyLabels(dm, idm);CHKERRQ(ierr); 1146b325530aSVaclav Hapla ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr); 1147b325530aSVaclav Hapla if (flg) {ierr = DMPlexOrientInterface(idm);CHKERRQ(ierr);} 114884699f70SSatish Balay } 114943eeeb2dSStefano Zampini { 115043eeeb2dSStefano Zampini PetscBool isper; 115143eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 115243eeeb2dSStefano Zampini const DMBoundaryType *bd; 115343eeeb2dSStefano Zampini 115443eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 115543eeeb2dSStefano Zampini ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr); 115643eeeb2dSStefano Zampini } 11579a5b13a2SMatthew G Knepley *dmInt = idm; 1158a72f3261SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 11599f074e33SMatthew G Knepley PetscFunctionReturn(0); 11609f074e33SMatthew G Knepley } 116107b0a1fcSMatthew G Knepley 116280330477SMatthew G. Knepley /*@ 116380330477SMatthew G. Knepley DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices 116480330477SMatthew G. Knepley 116580330477SMatthew G. Knepley Collective on DM 116680330477SMatthew G. Knepley 116780330477SMatthew G. Knepley Input Parameter: 116880330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates 116980330477SMatthew G. Knepley 117080330477SMatthew G. Knepley Output Parameter: 117180330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates 117280330477SMatthew G. Knepley 117380330477SMatthew G. Knepley Level: intermediate 117480330477SMatthew G. Knepley 117580330477SMatthew G. Knepley Note: This is typically used when adding pieces other than vertices to a mesh 117680330477SMatthew G. Knepley 117780330477SMatthew G. Knepley .keywords: mesh 117865f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection() 117980330477SMatthew G. Knepley @*/ 118007b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB) 118107b0a1fcSMatthew G Knepley { 118207b0a1fcSMatthew G Knepley Vec coordinatesA, coordinatesB; 118343eeeb2dSStefano Zampini VecType vtype; 118407b0a1fcSMatthew G Knepley PetscSection coordSectionA, coordSectionB; 118507b0a1fcSMatthew G Knepley PetscScalar *coordsA, *coordsB; 11860bedd6beSMatthew G. Knepley PetscInt spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d; 118743eeeb2dSStefano Zampini PetscInt cStartA, cEndA, cStartB, cEndB, cS, cE; 118843eeeb2dSStefano Zampini PetscBool lc = PETSC_FALSE; 118907b0a1fcSMatthew G Knepley PetscErrorCode ierr; 119007b0a1fcSMatthew G Knepley 119107b0a1fcSMatthew G Knepley PetscFunctionBegin; 119243eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 119343eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 119476b791aaSMatthew G. Knepley if (dmA == dmB) PetscFunctionReturn(0); 119507b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr); 119607b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr); 119707b0a1fcSMatthew G Knepley if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB); 119843eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr); 119943eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr); 120069d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr); 120169d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr); 1202972bc18aSToby Isaac if (coordSectionA == coordSectionB) PetscFunctionReturn(0); 12030bedd6beSMatthew G. Knepley ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr); 12040bedd6beSMatthew G. Knepley if (!Nf) PetscFunctionReturn(0); 12050bedd6beSMatthew G. Knepley if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf); 1206df26b574SMatthew G. Knepley if (!coordSectionB) { 1207df26b574SMatthew G. Knepley PetscInt dim; 1208df26b574SMatthew G. Knepley 1209df26b574SMatthew G. Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr); 1210df26b574SMatthew G. Knepley ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr); 1211df26b574SMatthew G. Knepley ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr); 1212df26b574SMatthew G. Knepley ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr); 1213df26b574SMatthew G. Knepley } 121407b0a1fcSMatthew G Knepley ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr); 121507b0a1fcSMatthew G Knepley ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr); 121607b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr); 121743eeeb2dSStefano Zampini ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr); 121843eeeb2dSStefano Zampini if (cStartA <= cS && cS < cEndA) { /* localized coordinates */ 1219*367003a6SStefano Zampini if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB); 122043eeeb2dSStefano Zampini cS = cS - cStartA + cStartB; 122143eeeb2dSStefano Zampini cE = vEndB; 122243eeeb2dSStefano Zampini lc = PETSC_TRUE; 122343eeeb2dSStefano Zampini } else { 122443eeeb2dSStefano Zampini cS = vStartB; 122543eeeb2dSStefano Zampini cE = vEndB; 122643eeeb2dSStefano Zampini } 122743eeeb2dSStefano Zampini ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr); 122807b0a1fcSMatthew G Knepley for (v = vStartB; v < vEndB; ++v) { 122907b0a1fcSMatthew G Knepley ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr); 123007b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr); 123107b0a1fcSMatthew G Knepley } 123243eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 123343eeeb2dSStefano Zampini PetscInt c; 123443eeeb2dSStefano Zampini 123543eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 123643eeeb2dSStefano Zampini PetscInt dof; 123743eeeb2dSStefano Zampini 123843eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 123943eeeb2dSStefano Zampini ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr); 124043eeeb2dSStefano Zampini ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr); 124143eeeb2dSStefano Zampini } 124243eeeb2dSStefano Zampini } 124307b0a1fcSMatthew G Knepley ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr); 124407b0a1fcSMatthew G Knepley ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr); 124507b0a1fcSMatthew G Knepley ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr); 12468b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr); 124707b0a1fcSMatthew G Knepley ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr); 124807b0a1fcSMatthew G Knepley ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr); 124943eeeb2dSStefano Zampini ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr); 125043eeeb2dSStefano Zampini ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr); 125143eeeb2dSStefano Zampini ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr); 125243eeeb2dSStefano Zampini ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr); 125307b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr); 125407b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr); 125507b0a1fcSMatthew G Knepley for (v = 0; v < vEndB-vStartB; ++v) { 125643eeeb2dSStefano Zampini PetscInt offA, offB; 125743eeeb2dSStefano Zampini 125843eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr); 125943eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr); 126007b0a1fcSMatthew G Knepley for (d = 0; d < spaceDim; ++d) { 126143eeeb2dSStefano Zampini coordsB[offB+d] = coordsA[offA+d]; 126243eeeb2dSStefano Zampini } 126343eeeb2dSStefano Zampini } 126443eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 126543eeeb2dSStefano Zampini PetscInt c; 126643eeeb2dSStefano Zampini 126743eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 126843eeeb2dSStefano Zampini PetscInt dof, offA, offB; 126943eeeb2dSStefano Zampini 127043eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr); 127143eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr); 127243eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 127343eeeb2dSStefano Zampini ierr = PetscMemcpy(coordsB + offB,coordsA + offA,dof*sizeof(*coordsB));CHKERRQ(ierr); 127407b0a1fcSMatthew G Knepley } 127507b0a1fcSMatthew G Knepley } 127607b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr); 127707b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr); 127807b0a1fcSMatthew G Knepley ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr); 127907b0a1fcSMatthew G Knepley ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr); 128007b0a1fcSMatthew G Knepley PetscFunctionReturn(0); 128107b0a1fcSMatthew G Knepley } 12825c386225SMatthew G. Knepley 12834e3744c5SMatthew G. Knepley /*@ 12844e3744c5SMatthew G. Knepley DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh 12854e3744c5SMatthew G. Knepley 12864e3744c5SMatthew G. Knepley Collective on DM 12874e3744c5SMatthew G. Knepley 12884e3744c5SMatthew G. Knepley Input Parameter: 12894e3744c5SMatthew G. Knepley . dm - The complete DMPlex object 12904e3744c5SMatthew G. Knepley 12914e3744c5SMatthew G. Knepley Output Parameter: 12924e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices 12934e3744c5SMatthew G. Knepley 12944e3744c5SMatthew G. Knepley Level: intermediate 12954e3744c5SMatthew G. Knepley 129695452b02SPatrick Sanan Notes: 129795452b02SPatrick Sanan It does not copy over the coordinates. 129843eeeb2dSStefano Zampini 12994e3744c5SMatthew G. Knepley .keywords: mesh 130043eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 13014e3744c5SMatthew G. Knepley @*/ 13024e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint) 13034e3744c5SMatthew G. Knepley { 13044e3744c5SMatthew G. Knepley DM udm; 1305c9f63434SStefano Zampini PetscInt dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone; 13064e3744c5SMatthew G. Knepley PetscErrorCode ierr; 13074e3744c5SMatthew G. Knepley 13084e3744c5SMatthew G. Knepley PetscFunctionBegin; 130943eeeb2dSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 131043eeeb2dSStefano Zampini PetscValidPointer(dmUnint, 2); 1311c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 13124e3744c5SMatthew G. Knepley if (dim <= 1) { 13134e3744c5SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 1314595d4abbSMatthew G. Knepley *dmUnint = dm; 1315595d4abbSMatthew G. Knepley PetscFunctionReturn(0); 13164e3744c5SMatthew G. Knepley } 1317595d4abbSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1318595d4abbSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1319c9f63434SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 13204e3744c5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr); 13214e3744c5SMatthew G. Knepley ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr); 1322c73cfb54SMatthew G. Knepley ierr = DMSetDimension(udm, dim);CHKERRQ(ierr); 13234e3744c5SMatthew G. Knepley ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr); 13244e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1325595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 13264e3744c5SMatthew G. Knepley 13274e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 13284e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 13294e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 13304e3744c5SMatthew G. Knepley 13314e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++coneSize; 13324e3744c5SMatthew G. Knepley } 13334e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 13344e3744c5SMatthew G. Knepley ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr); 1335595d4abbSMatthew G. Knepley maxConeSize = PetscMax(maxConeSize, coneSize); 13364e3744c5SMatthew G. Knepley } 13374e3744c5SMatthew G. Knepley ierr = DMSetUp(udm);CHKERRQ(ierr); 1338785e854fSJed Brown ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr); 13394e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1340595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 13414e3744c5SMatthew G. Knepley 13424e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 13434e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 13444e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 13454e3744c5SMatthew G. Knepley 13464e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p; 13474e3744c5SMatthew G. Knepley } 13484e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 13494e3744c5SMatthew G. Knepley ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr); 13504e3744c5SMatthew G. Knepley } 13514e3744c5SMatthew G. Knepley ierr = PetscFree(cone);CHKERRQ(ierr); 1352c9f63434SStefano Zampini ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 13534e3744c5SMatthew G. Knepley ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr); 13544e3744c5SMatthew G. Knepley ierr = DMPlexStratify(udm);CHKERRQ(ierr); 13555c7de58aSMatthew G. Knepley /* Reduce SF */ 13565c7de58aSMatthew G. Knepley { 13575c7de58aSMatthew G. Knepley PetscSF sfPoint, sfPointUn; 13585c7de58aSMatthew G. Knepley const PetscSFNode *remotePoints; 13595c7de58aSMatthew G. Knepley const PetscInt *localPoints; 13605c7de58aSMatthew G. Knepley PetscSFNode *remotePointsUn; 13615c7de58aSMatthew G. Knepley PetscInt *localPointsUn; 13625c7de58aSMatthew G. Knepley PetscInt vEnd, numRoots, numLeaves, l; 13635c7de58aSMatthew G. Knepley PetscInt numLeavesUn = 0, n = 0; 13645c7de58aSMatthew G. Knepley PetscErrorCode ierr; 13655c7de58aSMatthew G. Knepley 13665c7de58aSMatthew G. Knepley /* Get original SF information */ 13675c7de58aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 13685c7de58aSMatthew G. Knepley ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr); 13695c7de58aSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr); 13705c7de58aSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 13715c7de58aSMatthew G. Knepley /* Allocate space for cells and vertices */ 13725c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++; 13735c7de58aSMatthew G. Knepley /* Fill in leaves */ 13745c7de58aSMatthew G. Knepley if (vEnd >= 0) { 13755c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr); 13765c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr); 13775c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; l++) { 13785c7de58aSMatthew G. Knepley if (localPoints[l] < vEnd) { 13795c7de58aSMatthew G. Knepley localPointsUn[n] = localPoints[l]; 13805c7de58aSMatthew G. Knepley remotePointsUn[n].rank = remotePoints[l].rank; 13815c7de58aSMatthew G. Knepley remotePointsUn[n].index = remotePoints[l].index; 13825c7de58aSMatthew G. Knepley ++n; 13835c7de58aSMatthew G. Knepley } 13845c7de58aSMatthew G. Knepley } 13855c7de58aSMatthew G. Knepley if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn); 13865c7de58aSMatthew G. Knepley ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr); 13875c7de58aSMatthew G. Knepley } 13885c7de58aSMatthew G. Knepley } 138943eeeb2dSStefano Zampini { 139043eeeb2dSStefano Zampini PetscBool isper; 139143eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 139243eeeb2dSStefano Zampini const DMBoundaryType *bd; 139343eeeb2dSStefano Zampini 139443eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 139543eeeb2dSStefano Zampini ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr); 139643eeeb2dSStefano Zampini } 139743eeeb2dSStefano Zampini 13984e3744c5SMatthew G. Knepley *dmUnint = udm; 13994e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 14004e3744c5SMatthew G. Knepley } 1401