xref: /petsc/src/dm/impls/plex/plexinterpolate.c (revision 5ebdaad1439ac5ccee6e774361c25dbf16b85bf4)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h>
3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h>
4e8f14785SLisandro Dalcin 
5e8f14785SLisandro Dalcin /* HashIJKL */
6e8f14785SLisandro Dalcin 
7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h>
8e8f14785SLisandro Dalcin 
9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey;
10e8f14785SLisandro Dalcin 
11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \
12e8f14785SLisandro Dalcin   PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \
13e8f14785SLisandro Dalcin                    PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l)))
14e8f14785SLisandro Dalcin 
15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \
16e8f14785SLisandro Dalcin   (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0)
17e8f14785SLisandro Dalcin 
18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1)
19e8f14785SLisandro Dalcin 
209f074e33SMatthew G Knepley 
219f074e33SMatthew G Knepley /*
229a5b13a2SMatthew G Knepley   DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell
23cd921712SStefano Zampini   This assumes that the mesh is not interpolated from the depth of point p to the vertices
249f074e33SMatthew G Knepley */
25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
269f074e33SMatthew G Knepley {
279f074e33SMatthew G Knepley   const PetscInt *cone = NULL;
28cd921712SStefano Zampini   PetscInt        coneSize;
299f074e33SMatthew G Knepley   PetscErrorCode  ierr;
309f074e33SMatthew G Knepley 
319f074e33SMatthew G Knepley   PetscFunctionBegin;
329f074e33SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
339f074e33SMatthew G Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
349f074e33SMatthew G Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
35439ece16SMatthew G. Knepley   ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr);
36439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
37439ece16SMatthew G. Knepley }
38439ece16SMatthew G. Knepley 
39439ece16SMatthew G. Knepley /*
40439ece16SMatthew G. Knepley   DMPlexRestoreFaces_Internal - Restores the array
41439ece16SMatthew G. Knepley */
42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
43439ece16SMatthew G. Knepley {
44439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
45439ece16SMatthew G. Knepley 
46439ece16SMatthew G. Knepley   PetscFunctionBegin;
47cd921712SStefano Zampini   if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); }
48439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
49439ece16SMatthew G. Knepley }
50439ece16SMatthew G. Knepley 
51439ece16SMatthew G. Knepley /*
52439ece16SMatthew G. Knepley   DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone
53439ece16SMatthew G. Knepley */
54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
55439ece16SMatthew G. Knepley {
56439ece16SMatthew G. Knepley   PetscInt       *facesTmp;
57439ece16SMatthew G. Knepley   PetscInt        maxConeSize, maxSupportSize;
58439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
59439ece16SMatthew G. Knepley 
60439ece16SMatthew G. Knepley   PetscFunctionBegin;
61439ece16SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
62cd921712SStefano Zampini   if (faces && coneSize) PetscValidIntPointer(cone,4);
63439ece16SMatthew G. Knepley   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
6469291d52SBarry Smith   if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);}
659f074e33SMatthew G Knepley   switch (dim) {
66c49d9212SMatthew G. Knepley   case 1:
67c49d9212SMatthew G. Knepley     switch (coneSize) {
68c49d9212SMatthew G. Knepley     case 2:
69c49d9212SMatthew G. Knepley       if (faces) {
70c49d9212SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
71c49d9212SMatthew G. Knepley         *faces = facesTmp;
72c49d9212SMatthew G. Knepley       }
73c49d9212SMatthew G. Knepley       if (numFaces) *numFaces = 2;
74c49d9212SMatthew G. Knepley       if (faceSize) *faceSize = 1;
75c49d9212SMatthew G. Knepley       break;
76c49d9212SMatthew G. Knepley     default:
7799836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
78c49d9212SMatthew G. Knepley     }
79c49d9212SMatthew G. Knepley     break;
809f074e33SMatthew G Knepley   case 2:
819f074e33SMatthew G Knepley     switch (coneSize) {
829f074e33SMatthew G Knepley     case 3:
839a5b13a2SMatthew G Knepley       if (faces) {
849a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
859a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
869a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
879a5b13a2SMatthew G Knepley         *faces = facesTmp;
889a5b13a2SMatthew G Knepley       }
899a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 3;
909a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
919f074e33SMatthew G Knepley       break;
929f074e33SMatthew G Knepley     case 4:
939a5b13a2SMatthew G Knepley       /* Vertices follow right hand rule */
949a5b13a2SMatthew G Knepley       if (faces) {
959a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
969a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
979a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[3];
989a5b13a2SMatthew G Knepley         facesTmp[6] = cone[3]; facesTmp[7] = cone[0];
999a5b13a2SMatthew G Knepley         *faces = facesTmp;
1009a5b13a2SMatthew G Knepley       }
1019a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 4;
1029a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
1039f074e33SMatthew G Knepley       break;
1049f074e33SMatthew G Knepley     default:
10599836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
1069f074e33SMatthew G Knepley     }
1079f074e33SMatthew G Knepley     break;
1089f074e33SMatthew G Knepley   case 3:
1099f074e33SMatthew G Knepley     switch (coneSize) {
1109f074e33SMatthew G Knepley     case 3:
1119a5b13a2SMatthew G Knepley       if (faces) {
1129a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
1139a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
1149a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
1159a5b13a2SMatthew G Knepley         *faces = facesTmp;
1169a5b13a2SMatthew G Knepley       }
1179a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 3;
1189a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 2;
1199f074e33SMatthew G Knepley       break;
1209f074e33SMatthew G Knepley     case 4:
1212e1b13c2SMatthew G. Knepley       /* Vertices of first face follow right hand rule and normal points away from last vertex */
1229a5b13a2SMatthew G Knepley       if (faces) {
1232e1b13c2SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2];
1242e1b13c2SMatthew G. Knepley         facesTmp[3] = cone[0]; facesTmp[4]  = cone[3]; facesTmp[5]  = cone[1];
1252e1b13c2SMatthew G. Knepley         facesTmp[6] = cone[0]; facesTmp[7]  = cone[2]; facesTmp[8]  = cone[3];
1262e1b13c2SMatthew G. Knepley         facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3];
1279a5b13a2SMatthew G Knepley         *faces = facesTmp;
1289a5b13a2SMatthew G Knepley       }
1299a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 4;
1309a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 3;
1319a5b13a2SMatthew G Knepley       break;
1329a5b13a2SMatthew G Knepley     case 8:
133e368ef20SMatthew G. Knepley       /*  7--------6
134e368ef20SMatthew G. Knepley          /|       /|
135e368ef20SMatthew G. Knepley         / |      / |
136e368ef20SMatthew G. Knepley        4--------5  |
137e368ef20SMatthew G. Knepley        |  |     |  |
138e368ef20SMatthew G. Knepley        |  |     |  |
139e368ef20SMatthew G. Knepley        |  1--------2
140e368ef20SMatthew G. Knepley        | /      | /
141e368ef20SMatthew G. Knepley        |/       |/
142e368ef20SMatthew G. Knepley        0--------3
143e368ef20SMatthew G. Knepley        */
1449a5b13a2SMatthew G Knepley       if (faces) {
14551cfd6a4SMatthew G. Knepley         facesTmp[0]  = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2]; facesTmp[3]  = cone[3]; /* Bottom */
14651cfd6a4SMatthew G. Knepley         facesTmp[4]  = cone[4]; facesTmp[5]  = cone[5]; facesTmp[6]  = cone[6]; facesTmp[7]  = cone[7]; /* Top */
14751cfd6a4SMatthew G. Knepley         facesTmp[8]  = cone[0]; facesTmp[9]  = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */
14851cfd6a4SMatthew G. Knepley         facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */
14951cfd6a4SMatthew G. Knepley         facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */
15051cfd6a4SMatthew G. Knepley         facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */
1519a5b13a2SMatthew G Knepley         *faces = facesTmp;
1529a5b13a2SMatthew G Knepley       }
1539a5b13a2SMatthew G Knepley       if (numFaces) *numFaces = 6;
1549a5b13a2SMatthew G Knepley       if (faceSize) *faceSize = 4;
1559f074e33SMatthew G Knepley       break;
1569f074e33SMatthew G Knepley     default:
15799836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
1589f074e33SMatthew G Knepley     }
1599f074e33SMatthew G Knepley     break;
1609f074e33SMatthew G Knepley   default:
16199836e0eSStefano Zampini     SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
1629f074e33SMatthew G Knepley   }
1639f074e33SMatthew G Knepley   PetscFunctionReturn(0);
1649f074e33SMatthew G Knepley }
1659f074e33SMatthew G Knepley 
16699836e0eSStefano Zampini /*
16799836e0eSStefano Zampini   DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms)
16899836e0eSStefano Zampini */
16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
17099836e0eSStefano Zampini {
17199836e0eSStefano Zampini   PetscInt       *facesTmp;
17299836e0eSStefano Zampini   PetscInt        maxConeSize, maxSupportSize;
17399836e0eSStefano Zampini   PetscErrorCode  ierr;
17499836e0eSStefano Zampini 
17599836e0eSStefano Zampini   PetscFunctionBegin;
17699836e0eSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17799836e0eSStefano Zampini   if (faces && coneSize) PetscValidIntPointer(cone,4);
17899836e0eSStefano Zampini   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
17999836e0eSStefano Zampini   if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);}
18099836e0eSStefano Zampini   switch (dim) {
18199836e0eSStefano Zampini   case 1:
18299836e0eSStefano Zampini     switch (coneSize) {
18399836e0eSStefano Zampini     case 2:
18499836e0eSStefano Zampini       if (faces) {
18599836e0eSStefano Zampini         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
18699836e0eSStefano Zampini         *faces = facesTmp;
18799836e0eSStefano Zampini       }
18899836e0eSStefano Zampini       if (numFaces)     *numFaces = 2;
18999836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
19099836e0eSStefano Zampini       if (faceSize)     *faceSize = 1;
19199836e0eSStefano Zampini       break;
19299836e0eSStefano Zampini     default:
19399836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
19499836e0eSStefano Zampini     }
19599836e0eSStefano Zampini     break;
19699836e0eSStefano Zampini   case 2:
19799836e0eSStefano Zampini     switch (coneSize) {
19899836e0eSStefano Zampini     case 4:
19999836e0eSStefano Zampini       if (faces) {
20099836e0eSStefano Zampini         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
20199836e0eSStefano Zampini         facesTmp[2] = cone[2]; facesTmp[3] = cone[3];
20299836e0eSStefano Zampini         facesTmp[4] = cone[0]; facesTmp[5] = cone[2];
20399836e0eSStefano Zampini         facesTmp[6] = cone[1]; facesTmp[7] = cone[3];
20499836e0eSStefano Zampini         *faces = facesTmp;
20599836e0eSStefano Zampini       }
20699836e0eSStefano Zampini       if (numFaces)     *numFaces = 4;
20799836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
20899836e0eSStefano Zampini       if (faceSize)     *faceSize = 2;
20999836e0eSStefano Zampini       break;
21099836e0eSStefano Zampini     default:
21199836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
21299836e0eSStefano Zampini     }
21399836e0eSStefano Zampini     break;
21499836e0eSStefano Zampini   case 3:
21599836e0eSStefano Zampini     switch (coneSize) {
21699836e0eSStefano Zampini     case 6: /* triangular prism */
21799836e0eSStefano Zampini       if (faces) {
21899836e0eSStefano Zampini         facesTmp[0]  = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2]; facesTmp[3]  = -1;      /* Bottom */
21999836e0eSStefano Zampini         facesTmp[4]  = cone[3]; facesTmp[5]  = cone[4]; facesTmp[6]  = cone[5]; facesTmp[7]  = -1;      /* Top */
22099836e0eSStefano Zampini         facesTmp[8]  = cone[0]; facesTmp[9]  = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */
22199836e0eSStefano Zampini         facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */
22299836e0eSStefano Zampini         facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */
22399836e0eSStefano Zampini         *faces = facesTmp;
22499836e0eSStefano Zampini       }
22599836e0eSStefano Zampini       if (numFaces)     *numFaces = 5;
22699836e0eSStefano Zampini       if (numFacesNotH) *numFacesNotH = 2;
22799836e0eSStefano Zampini       if (faceSize)     *faceSize = -4;
22899836e0eSStefano Zampini       break;
22999836e0eSStefano Zampini     default:
23099836e0eSStefano Zampini       SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
23199836e0eSStefano Zampini     }
23299836e0eSStefano Zampini     break;
23399836e0eSStefano Zampini   default:
23499836e0eSStefano Zampini     SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
23599836e0eSStefano Zampini   }
23699836e0eSStefano Zampini   PetscFunctionReturn(0);
23799836e0eSStefano Zampini }
23899836e0eSStefano Zampini 
23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
24099836e0eSStefano Zampini {
24199836e0eSStefano Zampini   PetscErrorCode  ierr;
24299836e0eSStefano Zampini 
24399836e0eSStefano Zampini   PetscFunctionBegin;
24499836e0eSStefano Zampini   if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); }
24599836e0eSStefano Zampini   PetscFunctionReturn(0);
24699836e0eSStefano Zampini }
24799836e0eSStefano Zampini 
24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[])
24999836e0eSStefano Zampini {
25099836e0eSStefano Zampini   const PetscInt *cone = NULL;
25199836e0eSStefano Zampini   PetscInt        coneSize;
25299836e0eSStefano Zampini   PetscErrorCode  ierr;
25399836e0eSStefano Zampini 
25499836e0eSStefano Zampini   PetscFunctionBegin;
25599836e0eSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25699836e0eSStefano Zampini   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
25799836e0eSStefano Zampini   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
25899836e0eSStefano Zampini   ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr);
25999836e0eSStefano Zampini   PetscFunctionReturn(0);
26099836e0eSStefano Zampini }
26199836e0eSStefano Zampini 
2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */
2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm)
2649f074e33SMatthew G Knepley {
265d4efc6f1SMatthew G. Knepley   DMLabel        subpointMap;
2669a5b13a2SMatthew G Knepley   PetscHashIJKL  faceTable;
2679a5b13a2SMatthew G Knepley   PetscInt      *pStart, *pEnd;
2689a5b13a2SMatthew G Knepley   PetscInt       cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d;
269e9fa77a1SMatthew G. Knepley   PetscInt       coneSizeH = 0, faceSizeAllH = 0, faceSizeAllT = 0, numCellFacesH = 0, faceT = 0, faceH, pMax = -1, dim, outerloop;
27099836e0eSStefano Zampini   PetscInt       cMax, fMax, eMax, vMax;
2719f074e33SMatthew G Knepley   PetscErrorCode ierr;
2729f074e33SMatthew G Knepley 
2739f074e33SMatthew G Knepley   PetscFunctionBegin;
274c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr);
275d4efc6f1SMatthew G. Knepley   /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */
276d4efc6f1SMatthew G. Knepley   ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr);
277d4efc6f1SMatthew G. Knepley   if (subpointMap) ++cellDim;
2789a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
2799a5b13a2SMatthew G Knepley   ++depth;
2809a5b13a2SMatthew G Knepley   ++cellDepth;
2819a5b13a2SMatthew G Knepley   cellDim -= depth - cellDepth;
282dcca6d9dSJed Brown   ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr);
2839a5b13a2SMatthew G Knepley   for (d = depth-1; d >= faceDepth; --d) {
2849a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr);
2859f074e33SMatthew G Knepley   }
2869a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr);
2879a5b13a2SMatthew G Knepley   pEnd[faceDepth] = pStart[faceDepth];
2889a5b13a2SMatthew G Knepley   for (d = faceDepth-1; d >= 0; --d) {
2899a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);
2909f074e33SMatthew G Knepley   }
29199836e0eSStefano Zampini   cMax = fMax = eMax = vMax = PETSC_DETERMINE;
29299836e0eSStefano Zampini   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
29399836e0eSStefano Zampini   if (cellDim == dim) {
29499836e0eSStefano Zampini     ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr);
29599836e0eSStefano Zampini     pMax = cMax;
29699836e0eSStefano Zampini   } else if (cellDim == dim -1) {
29799836e0eSStefano Zampini     ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr);
29899836e0eSStefano Zampini     pMax = fMax;
29999836e0eSStefano Zampini   }
30099836e0eSStefano Zampini   pMax = pMax < 0 ? pEnd[cellDepth] : pMax;
30199836e0eSStefano Zampini   if (pMax < pEnd[cellDepth]) {
30299836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
30399836e0eSStefano Zampini     PetscInt        numCellFacesT, faceSize, cf;
3049f074e33SMatthew G Knepley 
305e9fa77a1SMatthew G. Knepley     /* First get normal cell face size (we now allow hybrid cells to meet normal cells on either hybrid or normal faces */
306*5ebdaad1SMatthew G. Knepley     if (pStart[cellDepth] < pMax) {ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);}
307e9fa77a1SMatthew G. Knepley 
30899836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr);
30999836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr);
31099836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr);
31199836e0eSStefano Zampini     if (faceSize < 0) {
31299836e0eSStefano Zampini       PetscInt *sizes, minv, maxv;
31399836e0eSStefano Zampini 
31499836e0eSStefano Zampini       /* count vertices of hybrid and non-hybrid faces */
31599836e0eSStefano Zampini       ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr);
31699836e0eSStefano Zampini       for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */
31799836e0eSStefano Zampini         const PetscInt *cellFace = &cellFaces[-cf*faceSize];
31899836e0eSStefano Zampini         PetscInt       f;
31999836e0eSStefano Zampini 
32099836e0eSStefano Zampini         for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0);
32199836e0eSStefano Zampini       }
32299836e0eSStefano Zampini       ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr);
32399836e0eSStefano Zampini       minv = sizes[0];
32499836e0eSStefano Zampini       maxv = sizes[PetscMax(numCellFacesT-1, 0)];
32599836e0eSStefano Zampini       if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv);
326e9fa77a1SMatthew G. Knepley       faceSizeAllT = minv;
32799836e0eSStefano Zampini       ierr = PetscMemzero(sizes, numCellFacesH*sizeof(PetscInt));CHKERRQ(ierr);
32899836e0eSStefano Zampini       for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */
32999836e0eSStefano Zampini         const PetscInt *cellFace = &cellFaces[-cf*faceSize];
33099836e0eSStefano Zampini         PetscInt       f;
33199836e0eSStefano Zampini 
33299836e0eSStefano Zampini         for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0);
33399836e0eSStefano Zampini       }
33499836e0eSStefano Zampini       ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr);
33599836e0eSStefano Zampini       minv = sizes[0];
33699836e0eSStefano Zampini       maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)];
33799836e0eSStefano Zampini       ierr = PetscFree(sizes);CHKERRQ(ierr);
33899836e0eSStefano Zampini       if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv);
33999836e0eSStefano Zampini       faceSizeAllH = minv;
340*5ebdaad1SMatthew G. Knepley       if (!faceSizeAll) faceSizeAll = faceSizeAllT;
34199836e0eSStefano Zampini     } else { /* the size of the faces in hybrid cells is the same */
342e9fa77a1SMatthew G. Knepley       faceSizeAll = faceSizeAllH = faceSizeAllT = faceSize;
34399836e0eSStefano Zampini     }
34499836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr);
34599836e0eSStefano Zampini   } else if (pEnd[cellDepth] > pStart[cellDepth]) {
34699836e0eSStefano Zampini     ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);
34799836e0eSStefano Zampini   }
34899836e0eSStefano Zampini   if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
34999836e0eSStefano Zampini 
350b135d7daSStefano Zampini   /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid faces
35199836e0eSStefano Zampini      Then, faces for non-hybrid cells are numbered.
35299836e0eSStefano Zampini      This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */
35399836e0eSStefano Zampini   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
35499836e0eSStefano Zampini   for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) {
35599836e0eSStefano Zampini     PetscInt start, end;
35699836e0eSStefano Zampini 
35799836e0eSStefano Zampini     start = outerloop == 0 ? pMax : pStart[cellDepth];
35899836e0eSStefano Zampini     end = outerloop == 0 ? pEnd[cellDepth] : pMax;
35999836e0eSStefano Zampini     for (c = start; c < end; ++c) {
36099836e0eSStefano Zampini       const PetscInt *cellFaces;
361e9fa77a1SMatthew G. Knepley       PetscInt        numCellFaces, faceSize, faceSizeInc, faceSizeCheck, cf;
36299836e0eSStefano Zampini 
36399836e0eSStefano Zampini       if (c < pMax) {
3649a5b13a2SMatthew G Knepley         ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
3659a5b13a2SMatthew G Knepley         if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
366e9fa77a1SMatthew G. Knepley         faceSizeCheck = faceSizeAll;
36799836e0eSStefano Zampini       } else { /* Hybrid cell */
36899836e0eSStefano Zampini         const PetscInt *cone;
36999836e0eSStefano Zampini         PetscInt        numCellFacesN, coneSize;
37099836e0eSStefano Zampini 
37199836e0eSStefano Zampini         ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
37299836e0eSStefano Zampini         if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH);
37399836e0eSStefano Zampini         ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
37499836e0eSStefano Zampini         ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
37599836e0eSStefano Zampini         if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c);
37699836e0eSStefano Zampini         faceSize = PetscMax(faceSize, -faceSize);
37799836e0eSStefano Zampini         if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize);
37899836e0eSStefano Zampini         numCellFaces = numCellFacesN; /* process only non-hybrid faces */
379e9fa77a1SMatthew G. Knepley         faceSizeCheck = faceSizeAllT;
38099836e0eSStefano Zampini       }
38199836e0eSStefano Zampini       faceSizeInc = faceSize;
3829f074e33SMatthew G Knepley       for (cf = 0; cf < numCellFaces; ++cf) {
38399836e0eSStefano Zampini         const PetscInt   *cellFace = &cellFaces[cf*faceSizeInc];
38499836e0eSStefano Zampini         PetscInt          faceSizeH = faceSize;
3859a5b13a2SMatthew G Knepley         PetscHashIJKLKey  key;
386e8f14785SLisandro Dalcin         PetscHashIter     iter;
387e8f14785SLisandro Dalcin         PetscBool         missing;
3889f074e33SMatthew G Knepley 
38999836e0eSStefano Zampini         if (faceSizeInc == 2) {
3909a5b13a2SMatthew G Knepley           key.i = PetscMin(cellFace[0], cellFace[1]);
3919a5b13a2SMatthew G Knepley           key.j = PetscMax(cellFace[0], cellFace[1]);
39299836e0eSStefano Zampini           key.k = PETSC_MAX_INT;
39399836e0eSStefano Zampini           key.l = PETSC_MAX_INT;
3949a5b13a2SMatthew G Knepley         } else {
39599836e0eSStefano Zampini           key.i = cellFace[0];
39699836e0eSStefano Zampini           key.j = cellFace[1];
39799836e0eSStefano Zampini           key.k = cellFace[2];
39899836e0eSStefano Zampini           key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
399302440fdSBarry Smith           ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
4009f074e33SMatthew G Knepley         }
40199836e0eSStefano Zampini         /* this check is redundant for non-hybrid meshes */
402e9fa77a1SMatthew G. Knepley         if (faceSizeH != faceSizeCheck) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeCheck);
403e8f14785SLisandro Dalcin         ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
404e9fa77a1SMatthew G. Knepley         if (missing) {
405e9fa77a1SMatthew G. Knepley           ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);
406e9fa77a1SMatthew G. Knepley           if (c >= pMax) ++faceT;
407e9fa77a1SMatthew G. Knepley         }
4089a5b13a2SMatthew G Knepley       }
40999836e0eSStefano Zampini       if (c < pMax) {
410439ece16SMatthew G. Knepley         ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
41199836e0eSStefano Zampini       } else {
41299836e0eSStefano Zampini         ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr);
41399836e0eSStefano Zampini       }
41499836e0eSStefano Zampini     }
41599836e0eSStefano Zampini   }
41699836e0eSStefano Zampini   pEnd[faceDepth] = face;
41799836e0eSStefano Zampini 
41899836e0eSStefano Zampini   /* Second pass for hybrid meshes: number hybrid faces */
41999836e0eSStefano Zampini   for (c = pMax; c < pEnd[cellDepth]; ++c) {
42099836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
42199836e0eSStefano Zampini     PetscInt        numCellFaces, numCellFacesN, faceSize, cf, coneSize;
42299836e0eSStefano Zampini 
42399836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
42499836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
42599836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
42699836e0eSStefano Zampini     if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH);
42799836e0eSStefano Zampini     faceSize = PetscMax(faceSize, -faceSize);
42899836e0eSStefano Zampini     for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */
42999836e0eSStefano Zampini       const PetscInt   *cellFace = &cellFaces[cf*faceSize];
43099836e0eSStefano Zampini       PetscHashIJKLKey  key;
43199836e0eSStefano Zampini       PetscHashIter     iter;
43299836e0eSStefano Zampini       PetscBool         missing;
43399836e0eSStefano Zampini       PetscInt          faceSizeH = faceSize;
43499836e0eSStefano Zampini 
43599836e0eSStefano Zampini       if (faceSize == 2) {
43699836e0eSStefano Zampini         key.i = PetscMin(cellFace[0], cellFace[1]);
43799836e0eSStefano Zampini         key.j = PetscMax(cellFace[0], cellFace[1]);
43899836e0eSStefano Zampini         key.k = PETSC_MAX_INT;
43999836e0eSStefano Zampini         key.l = PETSC_MAX_INT;
44099836e0eSStefano Zampini       } else {
44199836e0eSStefano Zampini         key.i = cellFace[0];
44299836e0eSStefano Zampini         key.j = cellFace[1];
44399836e0eSStefano Zampini         key.k = cellFace[2];
44499836e0eSStefano Zampini         key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
44599836e0eSStefano Zampini         ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
44699836e0eSStefano Zampini       }
44799836e0eSStefano Zampini       if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH);
44899836e0eSStefano Zampini       ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
44999836e0eSStefano Zampini       if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);}
45099836e0eSStefano Zampini     }
45199836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
45299836e0eSStefano Zampini   }
45399836e0eSStefano Zampini   faceH = face - pEnd[faceDepth];
45499836e0eSStefano Zampini   if (faceH) {
45599836e0eSStefano Zampini     if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth];
45699836e0eSStefano Zampini     else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth];
45799836e0eSStefano Zampini     else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim);
4589a5b13a2SMatthew G Knepley   }
4599a5b13a2SMatthew G Knepley   pEnd[faceDepth] = face;
4609a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
4619a5b13a2SMatthew G Knepley   /* Count new points */
4629a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
4639a5b13a2SMatthew G Knepley     numPoints += pEnd[d]-pStart[d];
4649a5b13a2SMatthew G Knepley   }
4659a5b13a2SMatthew G Knepley   ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr);
4669a5b13a2SMatthew G Knepley   /* Set cone sizes */
4679a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
4689a5b13a2SMatthew G Knepley     PetscInt coneSize, p;
4699f074e33SMatthew G Knepley 
4709a5b13a2SMatthew G Knepley     if (d == faceDepth) {
471e9fa77a1SMatthew G. Knepley       /* Now we have two cases: */
472e9fa77a1SMatthew G. Knepley       if (faceSizeAll == faceSizeAllT) {
4739a5b13a2SMatthew G Knepley         /* I see no way to do this if we admit faces of different shapes */
47499836e0eSStefano Zampini         for (p = pStart[d]; p < pEnd[d]-faceH; ++p) {
4759a5b13a2SMatthew G Knepley           ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr);
4769a5b13a2SMatthew G Knepley         }
47799836e0eSStefano Zampini         for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) {
47899836e0eSStefano Zampini           ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr);
47999836e0eSStefano Zampini         }
480e9fa77a1SMatthew G. Knepley       } else if (faceSizeAll == faceSizeAllH) {
481e9fa77a1SMatthew G. Knepley         for (p = pStart[d]; p < pStart[d]+faceT; ++p) {
482e9fa77a1SMatthew G. Knepley           ierr = DMPlexSetConeSize(idm, p, faceSizeAllT);CHKERRQ(ierr);
483e9fa77a1SMatthew G. Knepley         }
484e9fa77a1SMatthew G. Knepley         for (p = pStart[d]+faceT; p < pEnd[d]-faceH; ++p) {
485e9fa77a1SMatthew G. Knepley           ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr);
486e9fa77a1SMatthew G. Knepley         }
487e9fa77a1SMatthew G. Knepley         for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) {
488e9fa77a1SMatthew G. Knepley           ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr);
489e9fa77a1SMatthew G. Knepley         }
490e9fa77a1SMatthew G. Knepley       } else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent faces sizes N: %D T: %D H: %D", faceSizeAll, faceSizeAllT, faceSizeAllH);
491a014044eSMatthew G Knepley     } else if (d == cellDepth) {
492a014044eSMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
493a014044eSMatthew G Knepley         /* Number of cell faces may be different from number of cell vertices*/
49499836e0eSStefano Zampini         if (p < pMax) {
495a014044eSMatthew G Knepley           ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr);
49699836e0eSStefano Zampini         } else {
49799836e0eSStefano Zampini           ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr);
49899836e0eSStefano Zampini         }
499a014044eSMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
500a014044eSMatthew G Knepley       }
5019a5b13a2SMatthew G Knepley     } else {
5029a5b13a2SMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
5039a5b13a2SMatthew G Knepley         ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
5049a5b13a2SMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
5059f074e33SMatthew G Knepley       }
5069f074e33SMatthew G Knepley     }
5079f074e33SMatthew G Knepley   }
5089f074e33SMatthew G Knepley   ierr = DMSetUp(idm);CHKERRQ(ierr);
5099f074e33SMatthew G Knepley   /* Get face cones from subsets of cell vertices */
51099836e0eSStefano Zampini   if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
5119a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
5129a5b13a2SMatthew G Knepley   for (d = depth; d > cellDepth; --d) {
5139a5b13a2SMatthew G Knepley     const PetscInt *cone;
5149a5b13a2SMatthew G Knepley     PetscInt        p;
5159a5b13a2SMatthew G Knepley 
5169a5b13a2SMatthew G Knepley     for (p = pStart[d]; p < pEnd[d]; ++p) {
5179a5b13a2SMatthew G Knepley       ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
5189a5b13a2SMatthew G Knepley       ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr);
5199a5b13a2SMatthew G Knepley       ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr);
5209a5b13a2SMatthew G Knepley       ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr);
5219f074e33SMatthew G Knepley     }
5229a5b13a2SMatthew G Knepley   }
52399836e0eSStefano Zampini   for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) {
52499836e0eSStefano Zampini     PetscInt start, end;
5259f074e33SMatthew G Knepley 
52699836e0eSStefano Zampini     start = outerloop == 0 ? pMax : pStart[cellDepth];
52799836e0eSStefano Zampini     end = outerloop == 0 ? pEnd[cellDepth] : pMax;
52899836e0eSStefano Zampini     for (c = start; c < end; ++c) {
52999836e0eSStefano Zampini       const PetscInt *cellFaces;
53099836e0eSStefano Zampini       PetscInt        numCellFaces, faceSize, faceSizeInc, cf;
53199836e0eSStefano Zampini 
53299836e0eSStefano Zampini       if (c < pMax) {
5339a5b13a2SMatthew G Knepley         ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
5349a5b13a2SMatthew G Knepley         if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
53599836e0eSStefano Zampini       } else {
53699836e0eSStefano Zampini         const PetscInt *cone;
53799836e0eSStefano Zampini         PetscInt        numCellFacesN, coneSize;
53899836e0eSStefano Zampini 
53999836e0eSStefano Zampini         ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
54099836e0eSStefano Zampini         if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH);
54199836e0eSStefano Zampini         ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
54299836e0eSStefano Zampini         ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
54399836e0eSStefano Zampini         if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c);
54499836e0eSStefano Zampini         faceSize = PetscMax(faceSize, -faceSize);
54599836e0eSStefano Zampini         if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize);
54699836e0eSStefano Zampini         numCellFaces = numCellFacesN; /* process only non-hybrid faces */
54799836e0eSStefano Zampini       }
54899836e0eSStefano Zampini       faceSizeInc = faceSize;
5499f074e33SMatthew G Knepley       for (cf = 0; cf < numCellFaces; ++cf) {
55099836e0eSStefano Zampini         const PetscInt  *cellFace = &cellFaces[cf*faceSizeInc];
5519a5b13a2SMatthew G Knepley         PetscHashIJKLKey key;
552e8f14785SLisandro Dalcin         PetscHashIter    iter;
553e8f14785SLisandro Dalcin         PetscBool        missing;
5549f074e33SMatthew G Knepley 
55599836e0eSStefano Zampini         if (faceSizeInc == 2) {
5569a5b13a2SMatthew G Knepley           key.i = PetscMin(cellFace[0], cellFace[1]);
5579a5b13a2SMatthew G Knepley           key.j = PetscMax(cellFace[0], cellFace[1]);
55899836e0eSStefano Zampini           key.k = PETSC_MAX_INT;
55999836e0eSStefano Zampini           key.l = PETSC_MAX_INT;
5609a5b13a2SMatthew G Knepley         } else {
561e8f14785SLisandro Dalcin           key.i = cellFace[0];
562e8f14785SLisandro Dalcin           key.j = cellFace[1];
563e8f14785SLisandro Dalcin           key.k = cellFace[2];
56499836e0eSStefano Zampini           key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
56599836e0eSStefano Zampini           ierr  = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr);
5669f074e33SMatthew G Knepley         }
567e8f14785SLisandro Dalcin         ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
568735a0255SMatthew G. Knepley         if (missing) {
5699a5b13a2SMatthew G Knepley           ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr);
570e8f14785SLisandro Dalcin           ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr);
571735a0255SMatthew G. Knepley           ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr);
5729a5b13a2SMatthew G Knepley         } else {
5739a5b13a2SMatthew G Knepley           const PetscInt *cone;
574735a0255SMatthew G. Knepley           PetscInt        coneSize, ornt, i, j, f;
5759f074e33SMatthew G Knepley 
576e8f14785SLisandro Dalcin           ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr);
5779a5b13a2SMatthew G Knepley           ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
5782e1b13c2SMatthew G. Knepley           /* Orient face: Do not allow reverse orientation at the first vertex */
5799f074e33SMatthew G Knepley           ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr);
5809f074e33SMatthew G Knepley           ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr);
5819a5b13a2SMatthew G Knepley           if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize);
5829a5b13a2SMatthew G Knepley           /* - First find the initial vertex */
5839a5b13a2SMatthew G Knepley           for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break;
5849a5b13a2SMatthew G Knepley           /* - Try forward comparison */
5859a5b13a2SMatthew G Knepley           for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break;
5869a5b13a2SMatthew G Knepley           if (j == faceSize) {
5879a5b13a2SMatthew G Knepley             if ((faceSize == 2) && (i == 1)) ornt = -2;
5889a5b13a2SMatthew G Knepley             else                             ornt = i;
5899a5b13a2SMatthew G Knepley           } else {
5909a5b13a2SMatthew G Knepley             /* - Try backward comparison */
5919a5b13a2SMatthew G Knepley             for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break;
5922e1b13c2SMatthew G. Knepley             if (j == faceSize) {
5932e1b13c2SMatthew G. Knepley               if (i == 0) ornt = -faceSize;
594dc1a705cSMatthew G. Knepley               else        ornt = -i;
595e9fa77a1SMatthew G. Knepley             } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c);
5969a5b13a2SMatthew G Knepley           }
5979a5b13a2SMatthew G Knepley           ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr);
5989f074e33SMatthew G Knepley         }
5999f074e33SMatthew G Knepley       }
60099836e0eSStefano Zampini       if (c < pMax) {
601439ece16SMatthew G. Knepley         ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
60299836e0eSStefano Zampini       } else {
60399836e0eSStefano Zampini         ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr);
6049f074e33SMatthew G Knepley       }
60599836e0eSStefano Zampini     }
60699836e0eSStefano Zampini   }
60799836e0eSStefano Zampini   /* Second pass for hybrid meshes: orient hybrid faces */
60899836e0eSStefano Zampini   for (c = pMax; c < pEnd[cellDepth]; ++c) {
60999836e0eSStefano Zampini     const PetscInt *cellFaces, *cone;
61099836e0eSStefano Zampini     PetscInt        numCellFaces, numCellFacesN, faceSize, cf, coneSize;
61199836e0eSStefano Zampini 
61299836e0eSStefano Zampini     ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr);
61399836e0eSStefano Zampini     ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr);
61499836e0eSStefano Zampini     ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
61599836e0eSStefano Zampini     if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH);
61699836e0eSStefano Zampini     faceSize = PetscMax(faceSize, -faceSize);
61799836e0eSStefano Zampini     for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */
61899836e0eSStefano Zampini       const PetscInt   *cellFace = &cellFaces[cf*faceSize];
61999836e0eSStefano Zampini       PetscHashIJKLKey key;
62099836e0eSStefano Zampini       PetscHashIter    iter;
62199836e0eSStefano Zampini       PetscBool        missing;
62299836e0eSStefano Zampini       PetscInt         faceSizeH = faceSize;
62399836e0eSStefano Zampini 
62499836e0eSStefano Zampini       if (faceSize == 2) {
62599836e0eSStefano Zampini         key.i = PetscMin(cellFace[0], cellFace[1]);
62699836e0eSStefano Zampini         key.j = PetscMax(cellFace[0], cellFace[1]);
62799836e0eSStefano Zampini         key.k = PETSC_MAX_INT;
62899836e0eSStefano Zampini         key.l = PETSC_MAX_INT;
62999836e0eSStefano Zampini       } else {
63099836e0eSStefano Zampini         key.i = cellFace[0];
63199836e0eSStefano Zampini         key.j = cellFace[1];
63299836e0eSStefano Zampini         key.k = cellFace[2];
63399836e0eSStefano Zampini         key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT;
63499836e0eSStefano Zampini         ierr  = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr);
63599836e0eSStefano Zampini       }
63699836e0eSStefano Zampini       if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH);
63799836e0eSStefano Zampini       ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr);
63899836e0eSStefano Zampini       if (missing) {
63999836e0eSStefano Zampini         ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr);
64099836e0eSStefano Zampini         ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr);
64199836e0eSStefano Zampini         ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr);
64299836e0eSStefano Zampini       } else {
643e9fa77a1SMatthew G. Knepley         PetscInt        fv[4] = {0, 1, 2, 3};
64499836e0eSStefano Zampini         const PetscInt *cone;
64599836e0eSStefano Zampini         PetscInt        coneSize, ornt, i, j, f;
64699836e0eSStefano Zampini 
64799836e0eSStefano Zampini         ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr);
64899836e0eSStefano Zampini         ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
64999836e0eSStefano Zampini         /* Orient face: Do not allow reverse orientation at the first vertex */
65099836e0eSStefano Zampini         ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr);
65199836e0eSStefano Zampini         ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr);
65299836e0eSStefano Zampini         if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH);
653e9fa77a1SMatthew G. Knepley         /* Hybrid faces are stored as tensor products of edges, so to compare them to normal faces, we have to flip */
654e9fa77a1SMatthew G. Knepley         if (faceSize == 4 && c >= pMax && faceSizeAll != faceSizeAllT && f < pEnd[faceDepth] - faceH) {fv[2] = 3; fv[3] = 2;}
65599836e0eSStefano Zampini         /* - First find the initial vertex */
656e9fa77a1SMatthew G. Knepley         for (i = 0; i < faceSizeH; ++i) if (cellFace[fv[0]] == cone[i]) break;
65799836e0eSStefano Zampini         /* - Try forward comparison */
658e9fa77a1SMatthew G. Knepley         for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+j)%faceSizeH]) break;
65999836e0eSStefano Zampini         if (j == faceSizeH) {
66099836e0eSStefano Zampini           if ((faceSizeH == 2) && (i == 1)) ornt = -2;
66199836e0eSStefano Zampini           else                              ornt = i;
66299836e0eSStefano Zampini         } else {
66399836e0eSStefano Zampini           /* - Try backward comparison */
664e9fa77a1SMatthew G. Knepley           for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+faceSizeH-j)%faceSizeH]) break;
66599836e0eSStefano Zampini           if (j == faceSizeH) {
66699836e0eSStefano Zampini             if (i == 0) ornt = -faceSizeH;
66799836e0eSStefano Zampini             else        ornt = -i;
668e9fa77a1SMatthew G. Knepley           } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c);
66999836e0eSStefano Zampini         }
67099836e0eSStefano Zampini         ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr);
67199836e0eSStefano Zampini       }
67299836e0eSStefano Zampini     }
67399836e0eSStefano Zampini     ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr);
67499836e0eSStefano Zampini   }
67599836e0eSStefano Zampini   if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]);
676c907b753SJed Brown   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
6779a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
6786551a8c7SMatthew G. Knepley   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
67999836e0eSStefano Zampini   ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr);
6809a5b13a2SMatthew G Knepley   ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr);
6819a5b13a2SMatthew G Knepley   ierr = DMPlexStratify(idm);CHKERRQ(ierr);
6829f074e33SMatthew G Knepley   PetscFunctionReturn(0);
6839f074e33SMatthew G Knepley }
6849f074e33SMatthew G Knepley 
685fa01033eSVaclav Hapla PetscErrorCode DMPlexOrientCell(DM dm, PetscInt p, PetscInt masterConeSize, const PetscInt masterCone[])
686fa01033eSVaclav Hapla {
68767aa0e3dSVaclav Hapla   PetscInt coneSize;
68867aa0e3dSVaclav Hapla   PetscInt start1=0;
68967aa0e3dSVaclav Hapla   PetscBool reverse1=PETSC_FALSE;
690a0d42dbcSVaclav Hapla   const PetscInt *cone=NULL;
691b8e38d09SVaclav Hapla   PetscErrorCode ierr;
692b8e38d09SVaclav Hapla 
693b8e38d09SVaclav Hapla   PetscFunctionBegin;
694b8e38d09SVaclav Hapla   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
695b8e38d09SVaclav Hapla   if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */
696b8e38d09SVaclav Hapla   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
697b8e38d09SVaclav Hapla   ierr = DMPlexFixFaceOrientations_Orient_Private(coneSize, masterConeSize, masterCone, cone, &start1, &reverse1);CHKERRQ(ierr);
698b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG)
699b8e38d09SVaclav Hapla   if (PetscUnlikely(cone[start1] != masterCone[0])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[0]", start1, cone[start1], masterCone[0]);
700b8e38d09SVaclav Hapla #endif
701b8e38d09SVaclav Hapla   ierr = DMPlexOrientCell_Internal(dm, p, start1, reverse1);CHKERRQ(ierr);
702b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG)
70367aa0e3dSVaclav Hapla   {
70467aa0e3dSVaclav Hapla     PetscInt c;
705b8e38d09SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
706b8e38d09SVaclav Hapla     for (c = 0; c < 2; c++) {
707b8e38d09SVaclav Hapla       if (PetscUnlikely(cone[c] != masterCone[c])) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[%d]", c, cone[c], masterCone[c], c);
708b8e38d09SVaclav Hapla     }
70967aa0e3dSVaclav Hapla   }
710b8e38d09SVaclav Hapla #endif
711b8e38d09SVaclav Hapla   PetscFunctionReturn(0);
712b8e38d09SVaclav Hapla }
713b8e38d09SVaclav Hapla 
7140fe46fbbSVaclav Hapla PetscErrorCode DMPlexOrientCell_Internal(DM dm, PetscInt p, PetscInt start1, PetscBool reverse1)
715b8e38d09SVaclav Hapla {
716fa01033eSVaclav Hapla   PetscInt i, j, k, maxConeSize, coneSize, coneConeSize, supportSize, supportConeSize;
717b8e38d09SVaclav Hapla   PetscInt start0, start;
718b8e38d09SVaclav Hapla   PetscBool reverse0, reverse;
719fa01033eSVaclav Hapla   PetscInt newornt;
720a0d42dbcSVaclav Hapla   const PetscInt *cone=NULL, *support=NULL, *supportCone=NULL, *ornts=NULL;
721a0d42dbcSVaclav Hapla   PetscInt *newcone=NULL, *newornts=NULL;
722fa01033eSVaclav Hapla   PetscErrorCode ierr;
723fa01033eSVaclav Hapla 
724fa01033eSVaclav Hapla   PetscFunctionBegin;
725b8e38d09SVaclav Hapla   if (!start1 && !reverse1) PetscFunctionReturn(0);
726fa01033eSVaclav Hapla   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
727fa01033eSVaclav Hapla   if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */
728fa01033eSVaclav Hapla   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
729b8e38d09SVaclav Hapla   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr);
730fa01033eSVaclav Hapla   /* permute p's cone and orientations */
731fa01033eSVaclav Hapla   ierr = DMPlexGetConeOrientation(dm, p, &ornts);CHKERRQ(ierr);
732fa01033eSVaclav Hapla   ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr);
733fa01033eSVaclav Hapla   ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr);
734fa01033eSVaclav Hapla   ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, cone, start1, reverse1, newcone);CHKERRQ(ierr);
735fa01033eSVaclav Hapla   ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, ornts, start1, reverse1, newornts);CHKERRQ(ierr);
736fa01033eSVaclav Hapla   /* if direction of p (face) is flipped, flip also p's cone points (edges) */
737fa01033eSVaclav Hapla   if (reverse1) {
738fa01033eSVaclav Hapla     for (i=0; i<coneSize; i++) {
739fa01033eSVaclav Hapla       ierr = DMPlexGetConeSize(dm, cone[i], &coneConeSize);CHKERRQ(ierr);
740fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Translate_Private(newornts[i], &start0, &reverse0);CHKERRQ(ierr);
741fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Combine_Private(coneConeSize, start0, reverse0, 1, PETSC_FALSE, &start, &reverse);CHKERRQ(ierr);
742fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneConeSize, start, reverse, &newornts[i]);CHKERRQ(ierr);
743fa01033eSVaclav Hapla     }
744fa01033eSVaclav Hapla   }
745fa01033eSVaclav Hapla   ierr = DMPlexSetConeOrientation(dm, p, newornts);CHKERRQ(ierr);
746fa01033eSVaclav Hapla   /* fix oriention of p within cones of p's support points */
747fa01033eSVaclav Hapla   ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr);
748fa01033eSVaclav Hapla   ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr);
749fa01033eSVaclav Hapla   for (j=0; j<supportSize; j++) {
750fa01033eSVaclav Hapla     ierr = DMPlexGetCone(dm, support[j], &supportCone);CHKERRQ(ierr);
751fa01033eSVaclav Hapla     ierr = DMPlexGetConeSize(dm, support[j], &supportConeSize);CHKERRQ(ierr);
752fa01033eSVaclav Hapla     ierr = DMPlexGetConeOrientation(dm, support[j], &ornts);CHKERRQ(ierr);
753fa01033eSVaclav Hapla     for (k=0; k<supportConeSize; k++) {
754fa01033eSVaclav Hapla       if (supportCone[k] != p) continue;
755fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Translate_Private(ornts[k], &start0, &reverse0);CHKERRQ(ierr);
756fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_Combine_Private(coneSize, start0, reverse0, start1, reverse1, &start, &reverse);CHKERRQ(ierr);
757fa01033eSVaclav Hapla       ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneSize, start, reverse, &newornt);CHKERRQ(ierr);
758fa01033eSVaclav Hapla       ierr = DMPlexInsertConeOrientation(dm, support[j], k, newornt);CHKERRQ(ierr);
759fa01033eSVaclav Hapla     }
760fa01033eSVaclav Hapla   }
761fa01033eSVaclav Hapla   /* rewrite cone */
762fa01033eSVaclav Hapla   ierr = DMPlexSetCone(dm, p, newcone);CHKERRQ(ierr);
763fa01033eSVaclav Hapla   ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr);
764fa01033eSVaclav Hapla   ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr);
765fa01033eSVaclav Hapla   PetscFunctionReturn(0);
766fa01033eSVaclav Hapla }
767fa01033eSVaclav Hapla 
768f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[])
769f80536cbSVaclav Hapla {
770f80536cbSVaclav Hapla   PetscInt            nleaves;
771f80536cbSVaclav Hapla   PetscInt            nranks;
772a0d42dbcSVaclav Hapla   const PetscMPIInt  *ranks=NULL;
773a0d42dbcSVaclav Hapla   const PetscInt     *roffset=NULL, *rmine=NULL, *rremote=NULL;
774f80536cbSVaclav Hapla   PetscInt            n, o, r;
775f80536cbSVaclav Hapla   PetscErrorCode      ierr;
776f80536cbSVaclav Hapla 
777f80536cbSVaclav Hapla   PetscFunctionBegin;
778f80536cbSVaclav Hapla   ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr);
779f80536cbSVaclav Hapla   nleaves = roffset[nranks];
780f80536cbSVaclav Hapla   ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr);
781f80536cbSVaclav Hapla   for (r=0; r<nranks; r++) {
782f80536cbSVaclav Hapla     /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote
783f80536cbSVaclav Hapla        - to unify order with the other side */
784f80536cbSVaclav Hapla     o = roffset[r];
785f80536cbSVaclav Hapla     n = roffset[r+1] - o;
786f80536cbSVaclav Hapla     ierr = PetscMemcpy(&(*rmine1)[o], &rmine[o], n*sizeof(PetscInt));CHKERRQ(ierr);
787f80536cbSVaclav Hapla     ierr = PetscMemcpy(&(*rremote1)[o], &rremote[o], n*sizeof(PetscInt));CHKERRQ(ierr);
788f80536cbSVaclav Hapla     ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr);
789f80536cbSVaclav Hapla   }
790f80536cbSVaclav Hapla   PetscFunctionReturn(0);
791f80536cbSVaclav Hapla }
792f80536cbSVaclav Hapla 
793bba29ab8SVaclav Hapla PetscErrorCode DMPlexOrientInterface(DM dm)
7942e745bdaSMatthew G. Knepley {
795a0d42dbcSVaclav Hapla   PetscSF           sf=NULL;
796cae7fe92SVaclav Hapla   PetscInt          (*roots)[2], (*leaves)[2];
7978a650c75SVaclav Hapla   PetscMPIInt       (*rootsRanks)[2], (*leavesRanks)[2];
798a0d42dbcSVaclav Hapla   const PetscInt    *locals=NULL;
799a0d42dbcSVaclav Hapla   const PetscSFNode *remotes=NULL;
8008a650c75SVaclav Hapla   PetscInt           nroots, nleaves, p, c;
801f80536cbSVaclav Hapla   PetscInt           nranks, n, o, r;
802a0d42dbcSVaclav Hapla   const PetscMPIInt *ranks=NULL;
803a0d42dbcSVaclav Hapla   const PetscInt    *roffset=NULL;
804a0d42dbcSVaclav Hapla   PetscInt          *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */
805a0d42dbcSVaclav Hapla   const PetscInt    *cone=NULL;
806adeface4SVaclav Hapla   PetscInt           coneSize, ind0;
8072e745bdaSMatthew G. Knepley   MPI_Comm           comm;
8082e745bdaSMatthew G. Knepley   PetscMPIInt        rank;
8092e745bdaSMatthew G. Knepley   PetscInt           debug = 0;
8102e745bdaSMatthew G. Knepley   PetscErrorCode     ierr;
8112e745bdaSMatthew G. Knepley 
8122e745bdaSMatthew G. Knepley   PetscFunctionBegin;
813df6a9fadSVaclav Hapla   ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr);
8142e745bdaSMatthew G. Knepley   ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr);
8153ede9f65SMatthew G. Knepley   if (nroots < 0) PetscFunctionReturn(0);
816f80536cbSVaclav Hapla   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
817f80536cbSVaclav Hapla   ierr = PetscSFGetRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr);
818dc21a0bfSVaclav Hapla #if defined(PETSC_USE_DEBUG)
819dc21a0bfSVaclav Hapla   ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr);
820dc21a0bfSVaclav Hapla   ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr);
821dc21a0bfSVaclav Hapla #endif
822f80536cbSVaclav Hapla   ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr);
8238a650c75SVaclav Hapla   ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr);
8242e745bdaSMatthew G. Knepley   ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr);
8252e745bdaSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
8262e745bdaSMatthew G. Knepley   if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Roots\n");CHKERRQ(ierr);}
8279e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8289e24d8a0SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8299e24d8a0SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
8302e745bdaSMatthew G. Knepley     /* Translate all points to root numbering */
8318a650c75SVaclav Hapla     for (c = 0; c < 2; c++) {
8328a650c75SVaclav Hapla       if (coneSize > 1) {
8338a650c75SVaclav Hapla         ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr);
8348a650c75SVaclav Hapla         if (ind0 < 0) {
8358a650c75SVaclav Hapla           roots[p][c] = cone[c];
8368a650c75SVaclav Hapla           rootsRanks[p][c] = rank;
837c8148b97SVaclav Hapla         } else {
8388a650c75SVaclav Hapla           roots[p][c] = remotes[ind0].index;
8398a650c75SVaclav Hapla           rootsRanks[p][c] = remotes[ind0].rank;
8408a650c75SVaclav Hapla         }
8418a650c75SVaclav Hapla       } else {
8428a650c75SVaclav Hapla         roots[p][c] = -1;
8438a650c75SVaclav Hapla         rootsRanks[p][c] = -1;
8442e745bdaSMatthew G. Knepley       }
8452e745bdaSMatthew G. Knepley     }
8468a650c75SVaclav Hapla   }
8478a650c75SVaclav Hapla   if (debug) {
8488a650c75SVaclav Hapla     for (p = 0; p < nroots; ++p) {
8498a650c75SVaclav Hapla       ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8508a650c75SVaclav Hapla       ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
8518a650c75SVaclav Hapla       if (coneSize > 1) {
8528a650c75SVaclav Hapla         ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: cone=[%D %D] roots=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], roots[p][0], roots[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);
8538a650c75SVaclav Hapla       }
8548a650c75SVaclav Hapla     }
8558a650c75SVaclav Hapla     ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);
8568a650c75SVaclav Hapla   }
8579e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8588ccb905dSVaclav Hapla     for (c = 0; c < 2; c++) {
8598ccb905dSVaclav Hapla       leaves[p][c] = -2;
8608ccb905dSVaclav Hapla       leavesRanks[p][c] = -2;
8618ccb905dSVaclav Hapla     }
862c8148b97SVaclav Hapla   }
8632e745bdaSMatthew G. Knepley   ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr);
8648a650c75SVaclav Hapla   ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr);
8652e745bdaSMatthew G. Knepley   ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr);
8668a650c75SVaclav Hapla   ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr);
867c8148b97SVaclav Hapla   if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);}
868c8148b97SVaclav Hapla   if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referred leaves\n");CHKERRQ(ierr);}
8699e24d8a0SVaclav Hapla   for (p = 0; p < nroots; ++p) {
8709e24d8a0SVaclav Hapla     if (leaves[p][0] < 0) continue;
8719e24d8a0SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
8729e24d8a0SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
873ea211068SVaclav Hapla     if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: cone=[%D %D] leaves=[%D %D] roots=[%D %D] leavesRanks=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], leaves[p][0], leaves[p][1], roots[p][0], roots[p][1], leavesRanks[p][0], leavesRanks[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);}
874ea211068SVaclav Hapla     if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][0] != rootsRanks[p][0])) {
875f80536cbSVaclav Hapla       PetscInt masterCone[2];
876f80536cbSVaclav Hapla       /* Translate these two cone points back to leave numbering */
877f80536cbSVaclav Hapla       for (c = 0; c < 2; c++) {
878def636c8SVaclav Hapla         if (leavesRanks[p][c] == rank) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - remote rank of point %D is the same rank",leavesRanks[p][c]);
879f80536cbSVaclav Hapla         /* Find index of rank leavesRanks[p][c] among remote ranks */
880f80536cbSVaclav Hapla         /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */
881f80536cbSVaclav Hapla         ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr);
882f80536cbSVaclav Hapla         if (PetscUnlikely(r < 0)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - rank %D not found among remote ranks",leavesRanks[p][c]);
883f80536cbSVaclav Hapla         /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */
884f80536cbSVaclav Hapla         o = roffset[r];
885f80536cbSVaclav Hapla         n = roffset[r+1] - o;
886f80536cbSVaclav Hapla         ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr);
887adeface4SVaclav Hapla         if (PetscUnlikely(ind0 < 0)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "No cone point of %D is connected to (%D, %D) - it seems there is missing connection in point SF!",p,ranks[r],leaves[p][c]);
888f80536cbSVaclav Hapla         /* Get the corresponding local point */
889f80536cbSVaclav Hapla         masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr);
890f80536cbSVaclav Hapla       }
891f80536cbSVaclav Hapla       if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d]  %D: masterCone=[%D %D]\n", rank, p, masterCone[0], masterCone[1]);CHKERRQ(ierr);}
892f80536cbSVaclav Hapla       /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */
893f80536cbSVaclav Hapla       ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr);
89423aaf07bSVaclav Hapla     }
8952e745bdaSMatthew G. Knepley   }
896adeface4SVaclav Hapla #if defined(PETSC_USE_DEBUG)
897adeface4SVaclav Hapla   ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr);
898adeface4SVaclav Hapla   for (r = 0; r < nleaves; ++r) {
899adeface4SVaclav Hapla     p = locals[r];
900adeface4SVaclav Hapla     ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
901adeface4SVaclav Hapla     if (!coneSize) continue;
902adeface4SVaclav Hapla     ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
903adeface4SVaclav Hapla     for (c = 0; c < 2; c++) {
904adeface4SVaclav Hapla       ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr);
905adeface4SVaclav Hapla       if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing its cone point cone[%D] = %D!", p, c, cone[c]);
906adeface4SVaclav Hapla       if (leaves[p][c] != remotes[ind0].index || leavesRanks[p][c] != remotes[ind0].rank) {
907adeface4SVaclav Hapla         if (leavesRanks[p][c] == rank) {
908adeface4SVaclav Hapla           PetscInt ind1;
909adeface4SVaclav Hapla           ierr = PetscFindInt(leaves[p][c], nleaves, locals, &ind1);CHKERRQ(ierr);
910adeface4SVaclav Hapla           if (ind1 < 0) {
911adeface4SVaclav Hapla             SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). The latter was not even found among the local SF points - it is probably broken!", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]);
912adeface4SVaclav Hapla           } else {
913adeface4SVaclav Hapla             SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced %D --> (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leaves[p][c], remotes[ind1].rank, remotes[ind1].index);
914adeface4SVaclav Hapla           }
915adeface4SVaclav Hapla         } else {
916adeface4SVaclav Hapla           SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]);
917adeface4SVaclav Hapla         }
918adeface4SVaclav Hapla       }
919adeface4SVaclav Hapla     }
920adeface4SVaclav Hapla   }
921adeface4SVaclav Hapla #endif
9222e745bdaSMatthew G. Knepley   if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);}
9238a650c75SVaclav Hapla   ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr);
9247c7bb832SVaclav Hapla   ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr);
9252e745bdaSMatthew G. Knepley   PetscFunctionReturn(0);
9262e745bdaSMatthew G. Knepley }
9272e745bdaSMatthew G. Knepley 
9282e72742cSMatthew G. Knepley static PetscErrorCode IntArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], const char valname[], PetscInt n, const PetscInt a[])
9297bffde78SMichael Lange {
9302e72742cSMatthew G. Knepley   PetscInt       idx;
9312e72742cSMatthew G. Knepley   PetscMPIInt    rank;
9322e72742cSMatthew G. Knepley   PetscBool      flg;
9337bffde78SMichael Lange   PetscErrorCode ierr;
9347bffde78SMichael Lange 
9357bffde78SMichael Lange   PetscFunctionBegin;
9362e72742cSMatthew G. Knepley   ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr);
9372e72742cSMatthew G. Knepley   if (!flg) PetscFunctionReturn(0);
9382e72742cSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
9392e72742cSMatthew G. Knepley   ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr);
9402e72742cSMatthew G. Knepley   for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D %s %D\n", rank, idxname, idx, valname, a[idx]);CHKERRQ(ierr);}
9412e72742cSMatthew G. Knepley   ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);
9422e72742cSMatthew G. Knepley   PetscFunctionReturn(0);
9432e72742cSMatthew G. Knepley }
9442e72742cSMatthew G. Knepley 
9452e72742cSMatthew G. Knepley static PetscErrorCode SFNodeArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], PetscInt n, const PetscSFNode a[])
9462e72742cSMatthew G. Knepley {
9472e72742cSMatthew G. Knepley   PetscInt       idx;
9482e72742cSMatthew G. Knepley   PetscMPIInt    rank;
9492e72742cSMatthew G. Knepley   PetscBool      flg;
9502e72742cSMatthew G. Knepley   PetscErrorCode ierr;
9512e72742cSMatthew G. Knepley 
9522e72742cSMatthew G. Knepley   PetscFunctionBegin;
9532e72742cSMatthew G. Knepley   ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr);
9542e72742cSMatthew G. Knepley   if (!flg) PetscFunctionReturn(0);
9552e72742cSMatthew G. Knepley   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
9562e72742cSMatthew G. Knepley   ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr);
9572e72742cSMatthew G. Knepley   if (idxname) {
9582e72742cSMatthew G. Knepley     for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D rank %D index %D\n", rank, idxname, idx, a[idx].rank, a[idx].index);CHKERRQ(ierr);}
9592e72742cSMatthew G. Knepley   } else {
9602e72742cSMatthew G. Knepley     for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]rank %D index %D\n", rank, a[idx].rank, a[idx].index);CHKERRQ(ierr);}
9612e72742cSMatthew G. Knepley   }
9622e72742cSMatthew G. Knepley   ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);
9632e72742cSMatthew G. Knepley   PetscFunctionReturn(0);
9642e72742cSMatthew G. Knepley }
9652e72742cSMatthew G. Knepley 
9662e72742cSMatthew G. Knepley static PetscErrorCode DMPlexMapToLocalPoint(PetscHMapIJ roothash, const PetscInt localPoints[], PetscMPIInt rank, PetscSFNode remotePoint, PetscInt *localPoint)
9672e72742cSMatthew G. Knepley {
9682e72742cSMatthew G. Knepley   PetscErrorCode ierr;
9692e72742cSMatthew G. Knepley 
9702e72742cSMatthew G. Knepley   PetscFunctionBegin;
9712e72742cSMatthew G. Knepley   if (remotePoint.rank == rank) {
9722e72742cSMatthew G. Knepley     *localPoint = remotePoint.index;
9732e72742cSMatthew G. Knepley   } else {
9742e72742cSMatthew G. Knepley     PetscHashIJKey key;
9752e72742cSMatthew G. Knepley     PetscInt       root;
9762e72742cSMatthew G. Knepley 
9772e72742cSMatthew G. Knepley     key.i = remotePoint.index;
9782e72742cSMatthew G. Knepley     key.j = remotePoint.rank;
9792e72742cSMatthew G. Knepley     ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr);
9802e72742cSMatthew G. Knepley     if (root >= 0) {
9812e72742cSMatthew G. Knepley       *localPoint = localPoints[root];
9822e72742cSMatthew G. Knepley     } else PetscFunctionReturn(1);
9832e72742cSMatthew G. Knepley   }
9842e72742cSMatthew G. Knepley   PetscFunctionReturn(0);
9852e72742cSMatthew G. Knepley }
9862e72742cSMatthew G. Knepley 
9872e72742cSMatthew G. Knepley /*@
9882e72742cSMatthew G. Knepley   DMPlexInterpolatePointSF - Insert interpolated points in the overlap into the PointSF in parallel, following local interpolation
9892e72742cSMatthew G. Knepley 
9902e72742cSMatthew G. Knepley   Collective on DM
9912e72742cSMatthew G. Knepley 
9922e72742cSMatthew G. Knepley   Input Parameters:
9932e72742cSMatthew G. Knepley + dm      - The interpolated DM
9942e72742cSMatthew G. Knepley - pointSF - The initial SF without interpolated points
9952e72742cSMatthew G. Knepley 
9962e72742cSMatthew G. Knepley   Output Parameter:
9972e72742cSMatthew G. Knepley . pointSF - The SF including interpolated points
9982e72742cSMatthew G. Knepley 
9992e72742cSMatthew G. Knepley   Level: intermediate
10002e72742cSMatthew G. Knepley 
10012e72742cSMatthew G. Knepley    Note: All debugging for this process can be turned on with the options: -dm_interp_pre_view -petscsf_interp_pre_view -petscsection_interp_candidate_view -petscsection_interp_candidate_remote_view -petscsection_interp_claim_view -petscsf_interp_pre_view -dmplex_interp_debug
10022e72742cSMatthew G. Knepley 
10032e72742cSMatthew G. Knepley .keywords: mesh
10042e72742cSMatthew G. Knepley .seealso: DMPlexInterpolate(), DMPlexUninterpolate()
10052e72742cSMatthew G. Knepley @*/
1006e53487d3SMatthew G. Knepley PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF)
10072e72742cSMatthew G. Knepley {
10082e72742cSMatthew G. Knepley   /*
10092e72742cSMatthew G. Knepley        Okay, the algorithm is:
10102e72742cSMatthew G. Knepley          - Take each point in the overlap (root)
10112e72742cSMatthew G. Knepley          - Look at the neighboring points in the overlap (candidates)
10122e72742cSMatthew G. Knepley          - Send these candidate points to neighbors
10132e72742cSMatthew G. Knepley          - Neighbor checks for edge between root and candidate
10142e72742cSMatthew G. Knepley          - If edge is found, it replaces candidate point with edge point
10152e72742cSMatthew G. Knepley          - Send back the overwritten candidates (claims)
10162e72742cSMatthew G. Knepley          - Original guy checks for edges, different from original candidate, and gets its own edge
10172e72742cSMatthew G. Knepley          - This pair is put into SF
10182e72742cSMatthew G. Knepley 
10192e72742cSMatthew G. Knepley        We need a new algorithm that tolerates groups larger than 2.
10202e72742cSMatthew G. Knepley          - Take each point in the overlap (root)
10212e72742cSMatthew G. Knepley          - Find all collections of points in the overlap which make faces (do early join)
10222e72742cSMatthew G. Knepley          - Send collections as candidates (add size as first number)
102366aa2a39SMatthew G. Knepley            - Make sure to send collection to all owners of all overlap points in collection
10242e72742cSMatthew G. Knepley          - Neighbor check for face in collections
10252e72742cSMatthew G. Knepley          - If face is found, it replaces candidate point with face point
10262e72742cSMatthew G. Knepley          - Send back the overwritten candidates (claims)
10272e72742cSMatthew G. Knepley          - Original guy checks for faces, different from original candidate, and gets its own face
10282e72742cSMatthew G. Knepley          - This pair is put into SF
10292e72742cSMatthew G. Knepley   */
10302e72742cSMatthew G. Knepley   PetscHMapI         leafhash;
10312e72742cSMatthew G. Knepley   PetscHMapIJ        roothash;
10322e72742cSMatthew G. Knepley   const PetscInt    *localPoints, *rootdegree;
10332e72742cSMatthew G. Knepley   const PetscSFNode *remotePoints;
10342e72742cSMatthew G. Knepley   PetscSFNode       *candidates, *candidatesRemote, *claims;
10352e72742cSMatthew G. Knepley   PetscSection       candidateSection, candidateSectionRemote, claimSection;
10362e72742cSMatthew G. Knepley   PetscInt           numLeaves, l, numRoots, r, candidatesSize, candidatesRemoteSize;
10372e72742cSMatthew G. Knepley   PetscMPIInt        size, rank;
10382e72742cSMatthew G. Knepley   PetscHashIJKey     key;
10392e72742cSMatthew G. Knepley   PetscBool          debug = PETSC_FALSE;
10402e72742cSMatthew G. Knepley   PetscErrorCode     ierr;
10412e72742cSMatthew G. Knepley 
10422e72742cSMatthew G. Knepley   PetscFunctionBegin;
10432e72742cSMatthew G. Knepley   ierr = PetscOptionsHasName(NULL, ((PetscObject) dm)->prefix, "-dmplex_interp_debug", &debug);CHKERRQ(ierr);
10449852e123SBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr);
10457bffde78SMichael Lange   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr);
10467bffde78SMichael Lange   ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr);
10479852e123SBarry Smith   if (size < 2 || numRoots < 0) PetscFunctionReturn(0);
10482e72742cSMatthew G. Knepley   ierr = PetscObjectViewFromOptions((PetscObject) dm, NULL, "-dm_interp_pre_view");CHKERRQ(ierr);
10492e72742cSMatthew G. Knepley   ierr = PetscObjectViewFromOptions((PetscObject) pointSF, NULL, "-petscsf_interp_pre_view");CHKERRQ(ierr);
105025afeb17SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr);
10517bffde78SMichael Lange   /* Build hashes of points in the SF for efficient lookup */
1052e8f14785SLisandro Dalcin   ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr);
1053e8f14785SLisandro Dalcin   ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr);
10542e72742cSMatthew G. Knepley   for (l = 0; l < numLeaves; ++l) {
10552e72742cSMatthew G. Knepley     key.i = remotePoints[l].index;
10562e72742cSMatthew G. Knepley     key.j = remotePoints[l].rank;
10572e72742cSMatthew G. Knepley     ierr = PetscHMapISet(leafhash, localPoints[l], l);CHKERRQ(ierr);
10582e72742cSMatthew G. Knepley     ierr = PetscHMapIJSet(roothash, key, l);CHKERRQ(ierr);
10597bffde78SMichael Lange   }
106066aa2a39SMatthew G. Knepley   /* Compute root degree to identify shared points */
10612e72742cSMatthew G. Knepley   ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr);
10622e72742cSMatthew G. Knepley   ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr);
10632e72742cSMatthew G. Knepley   ierr = IntArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-interp_root_degree_view", "Root degree", "point", "degree", numRoots, rootdegree);CHKERRQ(ierr);
106466aa2a39SMatthew G. Knepley   /* Build a section / SFNode array of candidate points (face bd points) in the cone(support(leaf)),
106566aa2a39SMatthew G. Knepley      where each candidate is defined by a set of remote points (roots) for the other points that define the face. */
10667bffde78SMichael Lange   ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr);
10677bffde78SMichael Lange   ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr);
10687bffde78SMichael Lange   {
106966aa2a39SMatthew G. Knepley     PetscHMapIJ facehash;
10702e72742cSMatthew G. Knepley 
107166aa2a39SMatthew G. Knepley     ierr = PetscHMapIJCreate(&facehash);CHKERRQ(ierr);
10722e72742cSMatthew G. Knepley     for (l = 0; l < numLeaves; ++l) {
10732e72742cSMatthew G. Knepley       const PetscInt    localPoint = localPoints[l];
10742e72742cSMatthew G. Knepley       const PetscInt   *support;
10752e72742cSMatthew G. Knepley       PetscInt          supportSize, s;
10762e72742cSMatthew G. Knepley 
10772e72742cSMatthew G. Knepley       if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]  Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);}
10782e72742cSMatthew G. Knepley       ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr);
10792e72742cSMatthew G. Knepley       ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr);
10802e72742cSMatthew G. Knepley       for (s = 0; s < supportSize; ++s) {
10812e72742cSMatthew G. Knepley         const PetscInt  face = support[s];
10822e72742cSMatthew G. Knepley         const PetscInt *cone;
10832e72742cSMatthew G. Knepley         PetscInt        coneSize, c, f, root;
10842e72742cSMatthew G. Knepley         PetscBool       isFace = PETSC_TRUE;
10852e72742cSMatthew G. Knepley 
10862e72742cSMatthew G. Knepley         /* Only add face once */
10872e72742cSMatthew G. Knepley         if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Support point %D\n", rank, face);CHKERRQ(ierr);}
108866aa2a39SMatthew G. Knepley         key.i = localPoint;
108966aa2a39SMatthew G. Knepley         key.j = face;
109066aa2a39SMatthew G. Knepley         ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr);
10912e72742cSMatthew G. Knepley         if (f >= 0) continue;
10922e72742cSMatthew G. Knepley         ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr);
10932e72742cSMatthew G. Knepley         ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr);
10942e72742cSMatthew G. Knepley         /* If a cone point does not map to leaves on any proc, then do not put face in SF */
10952e72742cSMatthew G. Knepley         for (c = 0; c < coneSize; ++c) {
10962e72742cSMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]      Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);}
10972e72742cSMatthew G. Knepley           ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr);
10982e72742cSMatthew G. Knepley           if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;}
10992e72742cSMatthew G. Knepley         }
11002e72742cSMatthew G. Knepley         if (isFace) {
110166aa2a39SMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Found shared face %D\n", rank, face);CHKERRQ(ierr);}
110266aa2a39SMatthew G. Knepley           ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr);
11032e72742cSMatthew G. Knepley           ierr = PetscSectionAddDof(candidateSection, localPoint, coneSize);CHKERRQ(ierr);
11047bffde78SMichael Lange         }
11057bffde78SMichael Lange       }
11062e72742cSMatthew G. Knepley     }
11072e72742cSMatthew G. Knepley     if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);}
110866aa2a39SMatthew G. Knepley     ierr = PetscHMapIJClear(facehash);CHKERRQ(ierr);
11097bffde78SMichael Lange     ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr);
11107bffde78SMichael Lange     ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr);
11117bffde78SMichael Lange     ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr);
11122e72742cSMatthew G. Knepley     for (l = 0; l < numLeaves; ++l) {
11132e72742cSMatthew G. Knepley       const PetscInt    localPoint = localPoints[l];
11142e72742cSMatthew G. Knepley       const PetscInt   *support;
11152e72742cSMatthew G. Knepley       PetscInt          supportSize, s, offset, idx = 0;
11162e72742cSMatthew G. Knepley 
11172e72742cSMatthew G. Knepley       if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]  Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);}
11182e72742cSMatthew G. Knepley       ierr = PetscSectionGetOffset(candidateSection, localPoint, &offset);CHKERRQ(ierr);
11192e72742cSMatthew G. Knepley       ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr);
11202e72742cSMatthew G. Knepley       ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr);
11212e72742cSMatthew G. Knepley       for (s = 0; s < supportSize; ++s) {
11222e72742cSMatthew G. Knepley         const PetscInt  face = support[s];
11232e72742cSMatthew G. Knepley         const PetscInt *cone;
11242e72742cSMatthew G. Knepley         PetscInt        coneSize, c, f, root;
11252e72742cSMatthew G. Knepley         PetscBool       isFace = PETSC_TRUE;
11262e72742cSMatthew G. Knepley 
11272e72742cSMatthew G. Knepley         /* Only add face once */
11282e72742cSMatthew G. Knepley         if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Support point %D\n", rank, face);CHKERRQ(ierr);}
112966aa2a39SMatthew G. Knepley         key.i = localPoint;
113066aa2a39SMatthew G. Knepley         key.j = face;
113166aa2a39SMatthew G. Knepley         ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr);
11322e72742cSMatthew G. Knepley         if (f >= 0) continue;
11332e72742cSMatthew G. Knepley         ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr);
11342e72742cSMatthew G. Knepley         ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr);
11352e72742cSMatthew G. Knepley         /* If a cone point does not map to leaves on any proc, then do not put face in SF */
11362e72742cSMatthew G. Knepley         for (c = 0; c < coneSize; ++c) {
11372e72742cSMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]      Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);}
11382e72742cSMatthew G. Knepley           ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr);
11392e72742cSMatthew G. Knepley           if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;}
11402e72742cSMatthew G. Knepley         }
11412e72742cSMatthew G. Knepley         if (isFace) {
114266aa2a39SMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Adding shared face %D at idx %D\n", rank, face, idx);CHKERRQ(ierr);}
114366aa2a39SMatthew G. Knepley           ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr);
11442e72742cSMatthew G. Knepley           candidates[offset+idx].rank    = -1;
11452e72742cSMatthew G. Knepley           candidates[offset+idx++].index = coneSize-1;
11462e72742cSMatthew G. Knepley           for (c = 0; c < coneSize; ++c) {
11472e72742cSMatthew G. Knepley             if (cone[c] == localPoint) continue;
11482e72742cSMatthew G. Knepley             if (rootdegree[cone[c]]) {
11492e72742cSMatthew G. Knepley               candidates[offset+idx].rank    = rank;
11502e72742cSMatthew G. Knepley               candidates[offset+idx++].index = cone[c];
11512e72742cSMatthew G. Knepley             } else {
11522e72742cSMatthew G. Knepley               ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr);
11532e72742cSMatthew G. Knepley               if (root < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot locate local point %D in SF", cone[c]);
11542e72742cSMatthew G. Knepley               candidates[offset+idx++] = remotePoints[root];
11557bffde78SMichael Lange             }
11567bffde78SMichael Lange           }
11572e72742cSMatthew G. Knepley         }
11582e72742cSMatthew G. Knepley       }
11592e72742cSMatthew G. Knepley     }
11602e72742cSMatthew G. Knepley     if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);}
116166aa2a39SMatthew G. Knepley     ierr = PetscHMapIJDestroy(&facehash);CHKERRQ(ierr);
11622e72742cSMatthew G. Knepley     ierr = PetscObjectViewFromOptions((PetscObject) candidateSection, NULL, "-petscsection_interp_candidate_view");CHKERRQ(ierr);
11632e72742cSMatthew G. Knepley     ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_view", "Candidates", NULL, candidatesSize, candidates);CHKERRQ(ierr);
11647bffde78SMichael Lange   }
11657bffde78SMichael Lange   /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */
11662e72742cSMatthew G. Knepley   /*   Note that this section is indexed by offsets into leaves, not by point number */
11677bffde78SMichael Lange   {
11687bffde78SMichael Lange     PetscSF   sfMulti, sfInverse, sfCandidates;
11697bffde78SMichael Lange     PetscInt *remoteOffsets;
11702e72742cSMatthew G. Knepley 
11717bffde78SMichael Lange     ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr);
11727bffde78SMichael Lange     ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr);
11737bffde78SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr);
11747bffde78SMichael Lange     ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr);
11757bffde78SMichael Lange     ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr);
11767bffde78SMichael Lange     ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr);
11777bffde78SMichael Lange     ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr);
11787bffde78SMichael Lange     ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr);
11797bffde78SMichael Lange     ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr);
11807bffde78SMichael Lange     ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr);
11817bffde78SMichael Lange     ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr);
11827bffde78SMichael Lange     ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
11832e72742cSMatthew G. Knepley 
11842e72742cSMatthew G. Knepley     ierr = PetscObjectViewFromOptions((PetscObject) candidateSectionRemote, NULL, "-petscsection_interp_candidate_remote_view");CHKERRQ(ierr);
11852e72742cSMatthew G. Knepley     ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_remote_view", "Remote Candidates", NULL, candidatesRemoteSize, candidatesRemote);CHKERRQ(ierr);
11867bffde78SMichael Lange   }
11872e72742cSMatthew G. Knepley   /* */
11887bffde78SMichael Lange   {
11892e72742cSMatthew G. Knepley     PetscInt idx;
11902e72742cSMatthew G. Knepley     /* There is a section point for every leaf attached to a given root point */
11912e72742cSMatthew G. Knepley     for (r = 0, idx = 0; r < numRoots; ++r) {
11922e72742cSMatthew G. Knepley       PetscInt deg;
11932e72742cSMatthew G. Knepley       for (deg = 0; deg < rootdegree[r]; ++deg, ++idx) {
11942e72742cSMatthew G. Knepley         PetscInt offset, dof, d;
11952e72742cSMatthew G. Knepley 
11967bffde78SMichael Lange         ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr);
11977bffde78SMichael Lange         ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr);
11982e72742cSMatthew G. Knepley         for (d = 0; d < dof; ++d) {
11992e72742cSMatthew G. Knepley           const PetscInt  sizeInd   = offset+d;
12002e72742cSMatthew G. Knepley           const PetscInt  numPoints = candidatesRemote[sizeInd].index;
12012e72742cSMatthew G. Knepley           const PetscInt *join      = NULL;
12022e72742cSMatthew G. Knepley           PetscInt        points[1024], p, joinSize;
12032e72742cSMatthew G. Knepley 
12042e72742cSMatthew G. Knepley           points[0] = r;
12052e72742cSMatthew G. Knepley           for (p = 0; p < numPoints; ++p) {
12062e72742cSMatthew G. Knepley             ierr = DMPlexMapToLocalPoint(roothash, localPoints, rank, candidatesRemote[offset+(++d)], &points[p+1]);
12072e72742cSMatthew G. Knepley             if (ierr) {d += numPoints-1 - p; break;} /* We got a point not in our overlap */
12082e72742cSMatthew G. Knepley             if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]  Checking local candidate %D\n", rank, points[p+1]);CHKERRQ(ierr);}
12097bffde78SMichael Lange           }
12102e72742cSMatthew G. Knepley           if (ierr) continue;
12112e72742cSMatthew G. Knepley           ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr);
12127bffde78SMichael Lange           if (joinSize == 1) {
12132e72742cSMatthew G. Knepley             if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Adding face %D at idx %D\n", rank, join[0], sizeInd);CHKERRQ(ierr);}
12142e72742cSMatthew G. Knepley             candidatesRemote[sizeInd].rank  = rank;
12152e72742cSMatthew G. Knepley             candidatesRemote[sizeInd].index = join[0];
12167bffde78SMichael Lange           }
12172e72742cSMatthew G. Knepley           ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr);
12187bffde78SMichael Lange         }
12197bffde78SMichael Lange       }
12207bffde78SMichael Lange     }
12212e72742cSMatthew G. Knepley     if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);}
12227bffde78SMichael Lange   }
12237bffde78SMichael Lange   /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */
12247bffde78SMichael Lange   {
12257bffde78SMichael Lange     PetscSF         sfMulti, sfClaims, sfPointNew;
12267bffde78SMichael Lange     PetscSFNode    *remotePointsNew;
12272e72742cSMatthew G. Knepley     PetscHMapI      claimshash;
12282e72742cSMatthew G. Knepley     PetscInt       *remoteOffsets, *localPointsNew;
12292e72742cSMatthew G. Knepley     PetscInt        claimsSize, pStart, pEnd, root, numLocalNew, p, d;
12302e72742cSMatthew G. Knepley 
12317bffde78SMichael Lange     ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr);
12327bffde78SMichael Lange     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr);
12337bffde78SMichael Lange     ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr);
12347bffde78SMichael Lange     ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr);
12352e72742cSMatthew G. Knepley     ierr = PetscSectionGetStorageSize(claimSection, &claimsSize);CHKERRQ(ierr);
12362e72742cSMatthew G. Knepley     ierr = PetscMalloc1(claimsSize, &claims);CHKERRQ(ierr);
12377bffde78SMichael Lange     ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr);
12387bffde78SMichael Lange     ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr);
12397bffde78SMichael Lange     ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr);
12407bffde78SMichael Lange     ierr = PetscFree(remoteOffsets);CHKERRQ(ierr);
12412e72742cSMatthew G. Knepley     ierr = PetscObjectViewFromOptions((PetscObject) claimSection, NULL, "-petscsection_interp_claim_view");CHKERRQ(ierr);
12422e72742cSMatthew G. Knepley     ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_claim_view", "Claims", NULL, claimsSize, claims);CHKERRQ(ierr);
12437bffde78SMichael Lange     /* Walk the original section of local supports and add an SF entry for each updated item */
1244e8f14785SLisandro Dalcin     ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr);
12457bffde78SMichael Lange     for (p = 0; p < numRoots; ++p) {
12462e72742cSMatthew G. Knepley       PetscInt dof, offset;
12472e72742cSMatthew G. Knepley 
12482e72742cSMatthew G. Knepley       if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]  Checking root for claims %D\n", rank, p);CHKERRQ(ierr);}
12497bffde78SMichael Lange       ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr);
12507bffde78SMichael Lange       ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr);
12512e72742cSMatthew G. Knepley       for (d = 0; d < dof;) {
12522e72742cSMatthew G. Knepley         if (claims[offset+d].rank >= 0) {
12532e72742cSMatthew G. Knepley           const PetscInt  faceInd   = offset+d;
12542e72742cSMatthew G. Knepley           const PetscInt  numPoints = candidates[faceInd].index;
12552e72742cSMatthew G. Knepley           const PetscInt *join      = NULL;
12562e72742cSMatthew G. Knepley           PetscInt        joinSize, points[1024], c;
12572e72742cSMatthew G. Knepley 
12582e72742cSMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Found claim for remote point (%D, %D)\n", rank, claims[faceInd].rank, claims[faceInd].index);CHKERRQ(ierr);}
12592e72742cSMatthew G. Knepley           points[0] = p;
12602e72742cSMatthew G. Knepley           if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]      point %D\n", rank, points[0]);CHKERRQ(ierr);}
12612e72742cSMatthew G. Knepley           for (c = 0, ++d; c < numPoints; ++c, ++d) {
1262e8f14785SLisandro Dalcin             key.i = candidates[offset+d].index;
1263e8f14785SLisandro Dalcin             key.j = candidates[offset+d].rank;
1264e8f14785SLisandro Dalcin             ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr);
12652e72742cSMatthew G. Knepley             points[c+1] = localPoints[root];
12662e72742cSMatthew G. Knepley             if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]      point %D\n", rank, points[c+1]);CHKERRQ(ierr);}
12672e72742cSMatthew G. Knepley           }
12682e72742cSMatthew G. Knepley           ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr);
12692e72742cSMatthew G. Knepley           if (joinSize == 1) {
12702e72742cSMatthew G. Knepley             if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d]    Found local face %D\n", rank, join[0]);CHKERRQ(ierr);}
12712e72742cSMatthew G. Knepley             ierr = PetscHMapISet(claimshash, join[0], faceInd);CHKERRQ(ierr);
12722e72742cSMatthew G. Knepley           }
12732e72742cSMatthew G. Knepley           ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr);
12742e72742cSMatthew G. Knepley         } else d += claims[offset+d].index+1;
12757bffde78SMichael Lange       }
12767bffde78SMichael Lange     }
12772e72742cSMatthew G. Knepley     if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);}
12787bffde78SMichael Lange     /* Create new pointSF from hashed claims */
1279e8f14785SLisandro Dalcin     ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr);
12807bffde78SMichael Lange     ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr);
12817bffde78SMichael Lange     ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr);
12827bffde78SMichael Lange     ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr);
12837bffde78SMichael Lange     for (p = 0; p < numLeaves; ++p) {
12847bffde78SMichael Lange       localPointsNew[p] = localPoints[p];
12857bffde78SMichael Lange       remotePointsNew[p].index = remotePoints[p].index;
12867bffde78SMichael Lange       remotePointsNew[p].rank  = remotePoints[p].rank;
12877bffde78SMichael Lange     }
1288f3190fc2SToby Isaac     p = numLeaves;
1289e8f14785SLisandro Dalcin     ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr);
1290f3190fc2SToby Isaac     ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr);
12917bffde78SMichael Lange     for (p = numLeaves; p < numLeaves + numLocalNew; ++p) {
12922e72742cSMatthew G. Knepley       PetscInt offset;
1293e8f14785SLisandro Dalcin       ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr);
12947bffde78SMichael Lange       remotePointsNew[p] = claims[offset];
12957bffde78SMichael Lange     }
12967bffde78SMichael Lange     ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr);
12977bffde78SMichael Lange     ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr);
12987bffde78SMichael Lange     ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr);
12997bffde78SMichael Lange     ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr);
1300e8f14785SLisandro Dalcin     ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr);
13017bffde78SMichael Lange   }
1302e8f14785SLisandro Dalcin   ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr);
1303e8f14785SLisandro Dalcin   ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr);
13047bffde78SMichael Lange   ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr);
13057bffde78SMichael Lange   ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr);
13067bffde78SMichael Lange   ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr);
13077bffde78SMichael Lange   ierr = PetscFree(candidates);CHKERRQ(ierr);
13087bffde78SMichael Lange   ierr = PetscFree(candidatesRemote);CHKERRQ(ierr);
13097bffde78SMichael Lange   ierr = PetscFree(claims);CHKERRQ(ierr);
131025afeb17SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr);
13117bffde78SMichael Lange   PetscFunctionReturn(0);
13127bffde78SMichael Lange }
13137bffde78SMichael Lange 
13140c795ddcSMatthew G. Knepley /*@C
131580330477SMatthew G. Knepley   DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc.
131680330477SMatthew G. Knepley 
131780330477SMatthew G. Knepley   Collective on DM
131880330477SMatthew G. Knepley 
1319e56d480eSMatthew G. Knepley   Input Parameters:
1320e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices
132110a67516SMatthew G. Knepley - dmInt - The interpolated DM
132280330477SMatthew G. Knepley 
132380330477SMatthew G. Knepley   Output Parameter:
13244e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object
132580330477SMatthew G. Knepley 
132680330477SMatthew G. Knepley   Level: intermediate
132780330477SMatthew G. Knepley 
132895452b02SPatrick Sanan   Notes:
132995452b02SPatrick Sanan     It does not copy over the coordinates.
133043eeeb2dSStefano Zampini 
133180330477SMatthew G. Knepley .keywords: mesh
133243eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates()
133380330477SMatthew G. Knepley @*/
13349f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt)
13359f074e33SMatthew G Knepley {
13369a5b13a2SMatthew G Knepley   DM             idm, odm = dm;
13377bffde78SMichael Lange   PetscSF        sfPoint;
13382e1b13c2SMatthew G. Knepley   PetscInt       depth, dim, d;
133910a67516SMatthew G. Knepley   const char    *name;
1340b325530aSVaclav Hapla   PetscBool      flg=PETSC_TRUE;
13419f074e33SMatthew G Knepley   PetscErrorCode ierr;
13429f074e33SMatthew G Knepley 
13439f074e33SMatthew G Knepley   PetscFunctionBegin;
134410a67516SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
134510a67516SMatthew G. Knepley   PetscValidPointer(dmInt, 2);
1346a72f3261SMatthew G. Knepley   ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr);
13472e1b13c2SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1348c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
1349b21b8912SMatthew G. Knepley   if ((depth == dim) || (dim <= 1)) {
135076b791aaSMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
135176b791aaSMatthew G. Knepley     idm  = dm;
1352b21b8912SMatthew G. Knepley   } else {
13539a5b13a2SMatthew G Knepley     for (d = 1; d < dim; ++d) {
13549a5b13a2SMatthew G Knepley       /* Create interpolated mesh */
135510a67516SMatthew G. Knepley       ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr);
13569a5b13a2SMatthew G Knepley       ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr);
1357c73cfb54SMatthew G. Knepley       ierr = DMSetDimension(idm, dim);CHKERRQ(ierr);
13587bffde78SMichael Lange       if (depth > 0) {
13597bffde78SMichael Lange         ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr);
13607bffde78SMichael Lange         ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr);
13612e72742cSMatthew G. Knepley         ierr = DMPlexInterpolatePointSF(idm, sfPoint);CHKERRQ(ierr);
13627bffde78SMichael Lange       }
13639a5b13a2SMatthew G Knepley       if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);}
13649a5b13a2SMatthew G Knepley       odm = idm;
13659f074e33SMatthew G Knepley     }
136610a67516SMatthew G. Knepley     ierr = PetscObjectGetName((PetscObject) dm,  &name);CHKERRQ(ierr);
136710a67516SMatthew G. Knepley     ierr = PetscObjectSetName((PetscObject) idm,  name);CHKERRQ(ierr);
136810a67516SMatthew G. Knepley     ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr);
136910a67516SMatthew G. Knepley     ierr = DMCopyLabels(dm, idm);CHKERRQ(ierr);
1370b325530aSVaclav Hapla     ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr);
1371b325530aSVaclav Hapla     if (flg) {ierr = DMPlexOrientInterface(idm);CHKERRQ(ierr);}
137284699f70SSatish Balay   }
137343eeeb2dSStefano Zampini   {
137443eeeb2dSStefano Zampini     PetscBool            isper;
137543eeeb2dSStefano Zampini     const PetscReal      *maxCell, *L;
137643eeeb2dSStefano Zampini     const DMBoundaryType *bd;
137743eeeb2dSStefano Zampini 
137843eeeb2dSStefano Zampini     ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
137943eeeb2dSStefano Zampini     ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr);
138043eeeb2dSStefano Zampini   }
13819a5b13a2SMatthew G Knepley   *dmInt = idm;
1382a72f3261SMatthew G. Knepley   ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr);
13839f074e33SMatthew G Knepley   PetscFunctionReturn(0);
13849f074e33SMatthew G Knepley }
138507b0a1fcSMatthew G Knepley 
138680330477SMatthew G. Knepley /*@
138780330477SMatthew G. Knepley   DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices
138880330477SMatthew G. Knepley 
138980330477SMatthew G. Knepley   Collective on DM
139080330477SMatthew G. Knepley 
139180330477SMatthew G. Knepley   Input Parameter:
139280330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates
139380330477SMatthew G. Knepley 
139480330477SMatthew G. Knepley   Output Parameter:
139580330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates
139680330477SMatthew G. Knepley 
139780330477SMatthew G. Knepley   Level: intermediate
139880330477SMatthew G. Knepley 
139980330477SMatthew G. Knepley   Note: This is typically used when adding pieces other than vertices to a mesh
140080330477SMatthew G. Knepley 
140180330477SMatthew G. Knepley .keywords: mesh
140265f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection()
140380330477SMatthew G. Knepley @*/
140407b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB)
140507b0a1fcSMatthew G Knepley {
140607b0a1fcSMatthew G Knepley   Vec            coordinatesA, coordinatesB;
140743eeeb2dSStefano Zampini   VecType        vtype;
140807b0a1fcSMatthew G Knepley   PetscSection   coordSectionA, coordSectionB;
140907b0a1fcSMatthew G Knepley   PetscScalar   *coordsA, *coordsB;
14100bedd6beSMatthew G. Knepley   PetscInt       spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d;
141143eeeb2dSStefano Zampini   PetscInt       cStartA, cEndA, cStartB, cEndB, cS, cE;
141243eeeb2dSStefano Zampini   PetscBool      lc = PETSC_FALSE;
141307b0a1fcSMatthew G Knepley   PetscErrorCode ierr;
141407b0a1fcSMatthew G Knepley 
141507b0a1fcSMatthew G Knepley   PetscFunctionBegin;
141643eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
141743eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
141876b791aaSMatthew G. Knepley   if (dmA == dmB) PetscFunctionReturn(0);
141907b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr);
142007b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr);
142107b0a1fcSMatthew G Knepley   if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB);
142243eeeb2dSStefano Zampini   ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr);
142343eeeb2dSStefano Zampini   ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr);
142469d8a9ceSMatthew G. Knepley   ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr);
142569d8a9ceSMatthew G. Knepley   ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr);
1426972bc18aSToby Isaac   if (coordSectionA == coordSectionB) PetscFunctionReturn(0);
14270bedd6beSMatthew G. Knepley   ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr);
14280bedd6beSMatthew G. Knepley   if (!Nf) PetscFunctionReturn(0);
14290bedd6beSMatthew G. Knepley   if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf);
1430df26b574SMatthew G. Knepley   if (!coordSectionB) {
1431df26b574SMatthew G. Knepley     PetscInt dim;
1432df26b574SMatthew G. Knepley 
1433df26b574SMatthew G. Knepley     ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr);
1434df26b574SMatthew G. Knepley     ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr);
1435df26b574SMatthew G. Knepley     ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr);
1436df26b574SMatthew G. Knepley     ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr);
1437df26b574SMatthew G. Knepley   }
143807b0a1fcSMatthew G Knepley   ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr);
143907b0a1fcSMatthew G Knepley   ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr);
144007b0a1fcSMatthew G Knepley   ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr);
144143eeeb2dSStefano Zampini   ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr);
144243eeeb2dSStefano Zampini   if (cStartA <= cS && cS < cEndA) { /* localized coordinates */
1443367003a6SStefano Zampini     if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB);
144443eeeb2dSStefano Zampini     cS = cS - cStartA + cStartB;
144543eeeb2dSStefano Zampini     cE = vEndB;
144643eeeb2dSStefano Zampini     lc = PETSC_TRUE;
144743eeeb2dSStefano Zampini   } else {
144843eeeb2dSStefano Zampini     cS = vStartB;
144943eeeb2dSStefano Zampini     cE = vEndB;
145043eeeb2dSStefano Zampini   }
145143eeeb2dSStefano Zampini   ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr);
145207b0a1fcSMatthew G Knepley   for (v = vStartB; v < vEndB; ++v) {
145307b0a1fcSMatthew G Knepley     ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr);
145407b0a1fcSMatthew G Knepley     ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr);
145507b0a1fcSMatthew G Knepley   }
145643eeeb2dSStefano Zampini   if (lc) { /* localized coordinates */
145743eeeb2dSStefano Zampini     PetscInt c;
145843eeeb2dSStefano Zampini 
145943eeeb2dSStefano Zampini     for (c = cS-cStartB; c < cEndB-cStartB; c++) {
146043eeeb2dSStefano Zampini       PetscInt dof;
146143eeeb2dSStefano Zampini 
146243eeeb2dSStefano Zampini       ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr);
146343eeeb2dSStefano Zampini       ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr);
146443eeeb2dSStefano Zampini       ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr);
146543eeeb2dSStefano Zampini     }
146643eeeb2dSStefano Zampini   }
146707b0a1fcSMatthew G Knepley   ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr);
146807b0a1fcSMatthew G Knepley   ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr);
146907b0a1fcSMatthew G Knepley   ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr);
14708b9ced59SLisandro Dalcin   ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr);
147107b0a1fcSMatthew G Knepley   ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr);
147207b0a1fcSMatthew G Knepley   ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr);
147343eeeb2dSStefano Zampini   ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr);
147443eeeb2dSStefano Zampini   ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr);
147543eeeb2dSStefano Zampini   ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr);
147643eeeb2dSStefano Zampini   ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr);
147707b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr);
147807b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr);
147907b0a1fcSMatthew G Knepley   for (v = 0; v < vEndB-vStartB; ++v) {
148043eeeb2dSStefano Zampini     PetscInt offA, offB;
148143eeeb2dSStefano Zampini 
148243eeeb2dSStefano Zampini     ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr);
148343eeeb2dSStefano Zampini     ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr);
148407b0a1fcSMatthew G Knepley     for (d = 0; d < spaceDim; ++d) {
148543eeeb2dSStefano Zampini       coordsB[offB+d] = coordsA[offA+d];
148643eeeb2dSStefano Zampini     }
148743eeeb2dSStefano Zampini   }
148843eeeb2dSStefano Zampini   if (lc) { /* localized coordinates */
148943eeeb2dSStefano Zampini     PetscInt c;
149043eeeb2dSStefano Zampini 
149143eeeb2dSStefano Zampini     for (c = cS-cStartB; c < cEndB-cStartB; c++) {
149243eeeb2dSStefano Zampini       PetscInt dof, offA, offB;
149343eeeb2dSStefano Zampini 
149443eeeb2dSStefano Zampini       ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr);
149543eeeb2dSStefano Zampini       ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr);
149643eeeb2dSStefano Zampini       ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr);
149743eeeb2dSStefano Zampini       ierr = PetscMemcpy(coordsB + offB,coordsA + offA,dof*sizeof(*coordsB));CHKERRQ(ierr);
149807b0a1fcSMatthew G Knepley     }
149907b0a1fcSMatthew G Knepley   }
150007b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr);
150107b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr);
150207b0a1fcSMatthew G Knepley   ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr);
150307b0a1fcSMatthew G Knepley   ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr);
150407b0a1fcSMatthew G Knepley   PetscFunctionReturn(0);
150507b0a1fcSMatthew G Knepley }
15065c386225SMatthew G. Knepley 
15074e3744c5SMatthew G. Knepley /*@
15084e3744c5SMatthew G. Knepley   DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh
15094e3744c5SMatthew G. Knepley 
15104e3744c5SMatthew G. Knepley   Collective on DM
15114e3744c5SMatthew G. Knepley 
15124e3744c5SMatthew G. Knepley   Input Parameter:
15134e3744c5SMatthew G. Knepley . dm - The complete DMPlex object
15144e3744c5SMatthew G. Knepley 
15154e3744c5SMatthew G. Knepley   Output Parameter:
15164e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices
15174e3744c5SMatthew G. Knepley 
15184e3744c5SMatthew G. Knepley   Level: intermediate
15194e3744c5SMatthew G. Knepley 
152095452b02SPatrick Sanan   Notes:
152195452b02SPatrick Sanan     It does not copy over the coordinates.
152243eeeb2dSStefano Zampini 
15234e3744c5SMatthew G. Knepley .keywords: mesh
152443eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates()
15254e3744c5SMatthew G. Knepley @*/
15264e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint)
15274e3744c5SMatthew G. Knepley {
15284e3744c5SMatthew G. Knepley   DM             udm;
1529c9f63434SStefano Zampini   PetscInt       dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone;
15304e3744c5SMatthew G. Knepley   PetscErrorCode ierr;
15314e3744c5SMatthew G. Knepley 
15324e3744c5SMatthew G. Knepley   PetscFunctionBegin;
153343eeeb2dSStefano Zampini   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
153443eeeb2dSStefano Zampini   PetscValidPointer(dmUnint, 2);
1535c73cfb54SMatthew G. Knepley   ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr);
15364e3744c5SMatthew G. Knepley   if (dim <= 1) {
15374e3744c5SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
1538595d4abbSMatthew G. Knepley     *dmUnint = dm;
1539595d4abbSMatthew G. Knepley     PetscFunctionReturn(0);
15404e3744c5SMatthew G. Knepley   }
1541595d4abbSMatthew G. Knepley   ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr);
1542595d4abbSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
1543c9f63434SStefano Zampini   ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr);
15444e3744c5SMatthew G. Knepley   ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr);
15454e3744c5SMatthew G. Knepley   ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr);
1546c73cfb54SMatthew G. Knepley   ierr = DMSetDimension(udm, dim);CHKERRQ(ierr);
15474e3744c5SMatthew G. Knepley   ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr);
15484e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1549595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
15504e3744c5SMatthew G. Knepley 
15514e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
15524e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
15534e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
15544e3744c5SMatthew G. Knepley 
15554e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) ++coneSize;
15564e3744c5SMatthew G. Knepley     }
15574e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
15584e3744c5SMatthew G. Knepley     ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr);
1559595d4abbSMatthew G. Knepley     maxConeSize = PetscMax(maxConeSize, coneSize);
15604e3744c5SMatthew G. Knepley   }
15614e3744c5SMatthew G. Knepley   ierr = DMSetUp(udm);CHKERRQ(ierr);
1562785e854fSJed Brown   ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr);
15634e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
1564595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
15654e3744c5SMatthew G. Knepley 
15664e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
15674e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
15684e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
15694e3744c5SMatthew G. Knepley 
15704e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p;
15714e3744c5SMatthew G. Knepley     }
15724e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
15734e3744c5SMatthew G. Knepley     ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr);
15744e3744c5SMatthew G. Knepley   }
15754e3744c5SMatthew G. Knepley   ierr = PetscFree(cone);CHKERRQ(ierr);
1576c9f63434SStefano Zampini   ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr);
15774e3744c5SMatthew G. Knepley   ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr);
15784e3744c5SMatthew G. Knepley   ierr = DMPlexStratify(udm);CHKERRQ(ierr);
15795c7de58aSMatthew G. Knepley   /* Reduce SF */
15805c7de58aSMatthew G. Knepley   {
15815c7de58aSMatthew G. Knepley     PetscSF            sfPoint, sfPointUn;
15825c7de58aSMatthew G. Knepley     const PetscSFNode *remotePoints;
15835c7de58aSMatthew G. Knepley     const PetscInt    *localPoints;
15845c7de58aSMatthew G. Knepley     PetscSFNode       *remotePointsUn;
15855c7de58aSMatthew G. Knepley     PetscInt          *localPointsUn;
15865c7de58aSMatthew G. Knepley     PetscInt           vEnd, numRoots, numLeaves, l;
15875c7de58aSMatthew G. Knepley     PetscInt           numLeavesUn = 0, n = 0;
15885c7de58aSMatthew G. Knepley     PetscErrorCode     ierr;
15895c7de58aSMatthew G. Knepley 
15905c7de58aSMatthew G. Knepley     /* Get original SF information */
15915c7de58aSMatthew G. Knepley     ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr);
15925c7de58aSMatthew G. Knepley     ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr);
15935c7de58aSMatthew G. Knepley     ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr);
15945c7de58aSMatthew G. Knepley     ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr);
15955c7de58aSMatthew G. Knepley     /* Allocate space for cells and vertices */
15965c7de58aSMatthew G. Knepley     for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++;
15975c7de58aSMatthew G. Knepley     /* Fill in leaves */
15985c7de58aSMatthew G. Knepley     if (vEnd >= 0) {
15995c7de58aSMatthew G. Knepley       ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr);
16005c7de58aSMatthew G. Knepley       ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr);
16015c7de58aSMatthew G. Knepley       for (l = 0; l < numLeaves; l++) {
16025c7de58aSMatthew G. Knepley         if (localPoints[l] < vEnd) {
16035c7de58aSMatthew G. Knepley           localPointsUn[n]        = localPoints[l];
16045c7de58aSMatthew G. Knepley           remotePointsUn[n].rank  = remotePoints[l].rank;
16055c7de58aSMatthew G. Knepley           remotePointsUn[n].index = remotePoints[l].index;
16065c7de58aSMatthew G. Knepley           ++n;
16075c7de58aSMatthew G. Knepley         }
16085c7de58aSMatthew G. Knepley       }
16095c7de58aSMatthew G. Knepley       if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn);
16105c7de58aSMatthew G. Knepley       ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr);
16115c7de58aSMatthew G. Knepley     }
16125c7de58aSMatthew G. Knepley   }
161343eeeb2dSStefano Zampini   {
161443eeeb2dSStefano Zampini     PetscBool            isper;
161543eeeb2dSStefano Zampini     const PetscReal      *maxCell, *L;
161643eeeb2dSStefano Zampini     const DMBoundaryType *bd;
161743eeeb2dSStefano Zampini 
161843eeeb2dSStefano Zampini     ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr);
161943eeeb2dSStefano Zampini     ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr);
162043eeeb2dSStefano Zampini   }
162143eeeb2dSStefano Zampini 
16224e3744c5SMatthew G. Knepley   *dmUnint = udm;
16234e3744c5SMatthew G. Knepley   PetscFunctionReturn(0);
16244e3744c5SMatthew G. Knepley }
1625