xref: /petsc/src/dm/impls/plex/plexinterpolate.c (revision c49d9212298956d63c360e8e3f57cd97cef5e808)
19f074e33SMatthew G Knepley #include <petsc-private/dmpleximpl.h>   /*I      "petscdmplex.h"   I*/
29f074e33SMatthew G Knepley #include <../src/sys/utils/hash.h>
39f074e33SMatthew G Knepley 
49f074e33SMatthew G Knepley #undef __FUNCT__
59a5b13a2SMatthew G Knepley #define __FUNCT__ "DMPlexGetFaces_Internal"
69f074e33SMatthew G Knepley /*
79a5b13a2SMatthew G Knepley   DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell
89f074e33SMatthew G Knepley */
9439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
109f074e33SMatthew G Knepley {
119f074e33SMatthew G Knepley   const PetscInt *cone = NULL;
129a5b13a2SMatthew G Knepley   PetscInt        maxConeSize, maxSupportSize, coneSize;
139f074e33SMatthew G Knepley   PetscErrorCode  ierr;
149f074e33SMatthew G Knepley 
159f074e33SMatthew G Knepley   PetscFunctionBegin;
169f074e33SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
179a5b13a2SMatthew G Knepley   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
189f074e33SMatthew G Knepley   ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
199f074e33SMatthew G Knepley   ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
20439ece16SMatthew G. Knepley   ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr);
21439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
22439ece16SMatthew G. Knepley }
23439ece16SMatthew G. Knepley 
24439ece16SMatthew G. Knepley #undef __FUNCT__
25439ece16SMatthew G. Knepley #define __FUNCT__ "DMPlexRestoreFaces_Internal"
26439ece16SMatthew G. Knepley /*
27439ece16SMatthew G. Knepley   DMPlexRestoreFaces_Internal - Restores the array
28439ece16SMatthew G. Knepley */
29439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
30439ece16SMatthew G. Knepley {
31439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
32439ece16SMatthew G. Knepley 
33439ece16SMatthew G. Knepley   PetscFunctionBegin;
3406acb219SMatthew G. Knepley   ierr = DMRestoreWorkArray(dm, 0, PETSC_INT, (void *) faces);CHKERRQ(ierr);
35439ece16SMatthew G. Knepley   PetscFunctionReturn(0);
36439ece16SMatthew G. Knepley }
37439ece16SMatthew G. Knepley 
38439ece16SMatthew G. Knepley #undef __FUNCT__
39439ece16SMatthew G. Knepley #define __FUNCT__ "DMPlexGetRawFaces_Internal"
40439ece16SMatthew G. Knepley /*
41439ece16SMatthew G. Knepley   DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone
42439ece16SMatthew G. Knepley */
43439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[])
44439ece16SMatthew G. Knepley {
45439ece16SMatthew G. Knepley   PetscInt       *facesTmp;
46439ece16SMatthew G. Knepley   PetscInt        maxConeSize, maxSupportSize;
47439ece16SMatthew G. Knepley   PetscErrorCode  ierr;
48439ece16SMatthew G. Knepley 
49439ece16SMatthew G. Knepley   PetscFunctionBegin;
50439ece16SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
51439ece16SMatthew G. Knepley   ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr);
528496a43fSMatthew G. Knepley   if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), PETSC_INT, &facesTmp);CHKERRQ(ierr);}
539f074e33SMatthew G Knepley   switch (dim) {
54*c49d9212SMatthew G. Knepley   case 1:
55*c49d9212SMatthew G. Knepley     switch (coneSize) {
56*c49d9212SMatthew G. Knepley     case 2:
57*c49d9212SMatthew G. Knepley       if (faces) {
58*c49d9212SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
59*c49d9212SMatthew G. Knepley         *faces = facesTmp;
60*c49d9212SMatthew G. Knepley       }
61*c49d9212SMatthew G. Knepley       if (numFaces) *numFaces         = 2;
62*c49d9212SMatthew G. Knepley       if (faceSize) *faceSize         = 1;
63*c49d9212SMatthew G. Knepley       break;
64*c49d9212SMatthew G. Knepley     default:
65*c49d9212SMatthew G. Knepley       SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
66*c49d9212SMatthew G. Knepley     }
67*c49d9212SMatthew G. Knepley     break;
689f074e33SMatthew G Knepley   case 2:
699f074e33SMatthew G Knepley     switch (coneSize) {
709f074e33SMatthew G Knepley     case 3:
719a5b13a2SMatthew G Knepley       if (faces) {
729a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
739a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
749a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
759a5b13a2SMatthew G Knepley         *faces = facesTmp;
769a5b13a2SMatthew G Knepley       }
779a5b13a2SMatthew G Knepley       if (numFaces) *numFaces         = 3;
789a5b13a2SMatthew G Knepley       if (faceSize) *faceSize         = 2;
799f074e33SMatthew G Knepley       break;
809f074e33SMatthew G Knepley     case 4:
819a5b13a2SMatthew G Knepley       /* Vertices follow right hand rule */
829a5b13a2SMatthew G Knepley       if (faces) {
839a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
849a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
859a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[3];
869a5b13a2SMatthew G Knepley         facesTmp[6] = cone[3]; facesTmp[7] = cone[0];
879a5b13a2SMatthew G Knepley         *faces = facesTmp;
889a5b13a2SMatthew G Knepley       }
899a5b13a2SMatthew G Knepley       if (numFaces) *numFaces         = 4;
909a5b13a2SMatthew G Knepley       if (faceSize) *faceSize         = 2;
919f074e33SMatthew G Knepley       break;
929f074e33SMatthew G Knepley     default:
939f074e33SMatthew G Knepley       SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
949f074e33SMatthew G Knepley     }
959f074e33SMatthew G Knepley     break;
969f074e33SMatthew G Knepley   case 3:
979f074e33SMatthew G Knepley     switch (coneSize) {
989f074e33SMatthew G Knepley     case 3:
999a5b13a2SMatthew G Knepley       if (faces) {
1009a5b13a2SMatthew G Knepley         facesTmp[0] = cone[0]; facesTmp[1] = cone[1];
1019a5b13a2SMatthew G Knepley         facesTmp[2] = cone[1]; facesTmp[3] = cone[2];
1029a5b13a2SMatthew G Knepley         facesTmp[4] = cone[2]; facesTmp[5] = cone[0];
1039a5b13a2SMatthew G Knepley         *faces = facesTmp;
1049a5b13a2SMatthew G Knepley       }
1059a5b13a2SMatthew G Knepley       if (numFaces) *numFaces         = 3;
1069a5b13a2SMatthew G Knepley       if (faceSize) *faceSize         = 2;
1079f074e33SMatthew G Knepley       break;
1089f074e33SMatthew G Knepley     case 4:
1092e1b13c2SMatthew G. Knepley       /* Vertices of first face follow right hand rule and normal points away from last vertex */
1109a5b13a2SMatthew G Knepley       if (faces) {
1112e1b13c2SMatthew G. Knepley         facesTmp[0] = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2];
1122e1b13c2SMatthew G. Knepley         facesTmp[3] = cone[0]; facesTmp[4]  = cone[3]; facesTmp[5]  = cone[1];
1132e1b13c2SMatthew G. Knepley         facesTmp[6] = cone[0]; facesTmp[7]  = cone[2]; facesTmp[8]  = cone[3];
1142e1b13c2SMatthew G. Knepley         facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3];
1159a5b13a2SMatthew G Knepley         *faces = facesTmp;
1169a5b13a2SMatthew G Knepley       }
1179a5b13a2SMatthew G Knepley       if (numFaces) *numFaces         = 4;
1189a5b13a2SMatthew G Knepley       if (faceSize) *faceSize         = 3;
1199a5b13a2SMatthew G Knepley       break;
1209a5b13a2SMatthew G Knepley     case 8:
1219a5b13a2SMatthew G Knepley       if (faces) {
12251cfd6a4SMatthew G. Knepley         facesTmp[0]  = cone[0]; facesTmp[1]  = cone[1]; facesTmp[2]  = cone[2]; facesTmp[3]  = cone[3]; /* Bottom */
12351cfd6a4SMatthew G. Knepley         facesTmp[4]  = cone[4]; facesTmp[5]  = cone[5]; facesTmp[6]  = cone[6]; facesTmp[7]  = cone[7]; /* Top */
12451cfd6a4SMatthew G. Knepley         facesTmp[8]  = cone[0]; facesTmp[9]  = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */
12551cfd6a4SMatthew G. Knepley         facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */
12651cfd6a4SMatthew G. Knepley         facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */
12751cfd6a4SMatthew G. Knepley         facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */
1289a5b13a2SMatthew G Knepley         *faces = facesTmp;
1299a5b13a2SMatthew G Knepley       }
1309a5b13a2SMatthew G Knepley       if (numFaces) *numFaces         = 6;
1319a5b13a2SMatthew G Knepley       if (faceSize) *faceSize         = 4;
1329f074e33SMatthew G Knepley       break;
1339f074e33SMatthew G Knepley     default:
1349f074e33SMatthew G Knepley       SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim);
1359f074e33SMatthew G Knepley     }
1369f074e33SMatthew G Knepley     break;
1379f074e33SMatthew G Knepley   default:
1389f074e33SMatthew G Knepley     SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim);
1399f074e33SMatthew G Knepley   }
1409f074e33SMatthew G Knepley   PetscFunctionReturn(0);
1419f074e33SMatthew G Knepley }
1429f074e33SMatthew G Knepley 
1439f074e33SMatthew G Knepley #undef __FUNCT__
1449a5b13a2SMatthew G Knepley #define __FUNCT__ "DMPlexInterpolateFaces_Internal"
1459a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */
1469a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm)
1479f074e33SMatthew G Knepley {
148d4efc6f1SMatthew G. Knepley   DMLabel        subpointMap;
1499a5b13a2SMatthew G Knepley   PetscHashIJKL  faceTable;
1509a5b13a2SMatthew G Knepley   PetscInt      *pStart, *pEnd;
1519a5b13a2SMatthew G Knepley   PetscInt       cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d;
1529f074e33SMatthew G Knepley   PetscErrorCode ierr;
1539f074e33SMatthew G Knepley 
1549f074e33SMatthew G Knepley   PetscFunctionBegin;
1559a5b13a2SMatthew G Knepley   ierr = DMPlexGetDimension(dm, &cellDim);CHKERRQ(ierr);
156d4efc6f1SMatthew G. Knepley   /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */
157d4efc6f1SMatthew G. Knepley   ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr);
158d4efc6f1SMatthew G. Knepley   if (subpointMap) ++cellDim;
1599a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
1609a5b13a2SMatthew G Knepley   ++depth;
1619a5b13a2SMatthew G Knepley   ++cellDepth;
1629a5b13a2SMatthew G Knepley   cellDim -= depth - cellDepth;
1639a5b13a2SMatthew G Knepley   ierr = PetscMalloc2(depth+1,PetscInt,&pStart,depth+1,PetscInt,&pEnd);CHKERRQ(ierr);
1649a5b13a2SMatthew G Knepley   for (d = depth-1; d >= faceDepth; --d) {
1659a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr);
1669f074e33SMatthew G Knepley   }
1679a5b13a2SMatthew G Knepley   ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr);
1689a5b13a2SMatthew G Knepley   pEnd[faceDepth] = pStart[faceDepth];
1699a5b13a2SMatthew G Knepley   for (d = faceDepth-1; d >= 0; --d) {
1709a5b13a2SMatthew G Knepley     ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);
1719f074e33SMatthew G Knepley   }
1729a5b13a2SMatthew G Knepley   if (pEnd[cellDepth] > pStart[cellDepth]) {ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);}
1739a5b13a2SMatthew G Knepley   if (faceSizeAll > 4) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
1749a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
1759a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLSetMultivalued(faceTable, PETSC_FALSE);CHKERRQ(ierr);
1769a5b13a2SMatthew G Knepley   for (c = pStart[cellDepth], face = pStart[faceDepth]; c < pEnd[cellDepth]; ++c) {
1779f074e33SMatthew G Knepley     const PetscInt *cellFaces;
1789a5b13a2SMatthew G Knepley     PetscInt        numCellFaces, faceSize, cf, f;
1799f074e33SMatthew G Knepley 
1809a5b13a2SMatthew G Knepley     ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
1819a5b13a2SMatthew G Knepley     if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
1829f074e33SMatthew G Knepley     for (cf = 0; cf < numCellFaces; ++cf) {
1839a5b13a2SMatthew G Knepley       const PetscInt  *cellFace = &cellFaces[cf*faceSize];
1849a5b13a2SMatthew G Knepley       PetscHashIJKLKey key;
1859f074e33SMatthew G Knepley 
1869a5b13a2SMatthew G Knepley       if (faceSize == 2) {
1879a5b13a2SMatthew G Knepley         key.i = PetscMin(cellFace[0], cellFace[1]);
1889a5b13a2SMatthew G Knepley         key.j = PetscMax(cellFace[0], cellFace[1]);
1897fcd4ef0SJed Brown         key.k = 0;
1907fcd4ef0SJed Brown         key.l = 0;
1919a5b13a2SMatthew G Knepley       } else {
1929a5b13a2SMatthew G Knepley         key.i = cellFace[0]; key.j = cellFace[1]; key.k = cellFace[2]; key.l = faceSize > 3 ? cellFace[3] : 0;
1939a5b13a2SMatthew G Knepley         ierr = PetscSortInt(faceSize, (PetscInt *) &key);
1949f074e33SMatthew G Knepley       }
1959a5b13a2SMatthew G Knepley       ierr  = PetscHashIJKLGet(faceTable, key, &f);CHKERRQ(ierr);
1969a5b13a2SMatthew G Knepley       if (f < 0) {
1979a5b13a2SMatthew G Knepley         ierr = PetscHashIJKLAdd(faceTable, key, face);CHKERRQ(ierr);
1989a5b13a2SMatthew G Knepley         f    = face++;
1999a5b13a2SMatthew G Knepley       }
2009a5b13a2SMatthew G Knepley     }
201439ece16SMatthew G. Knepley     ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
2029a5b13a2SMatthew G Knepley   }
2039a5b13a2SMatthew G Knepley   pEnd[faceDepth] = face;
2049a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
2059a5b13a2SMatthew G Knepley   /* Count new points */
2069a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
2079a5b13a2SMatthew G Knepley     numPoints += pEnd[d]-pStart[d];
2089a5b13a2SMatthew G Knepley   }
2099a5b13a2SMatthew G Knepley   ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr);
2109a5b13a2SMatthew G Knepley   /* Set cone sizes */
2119a5b13a2SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
2129a5b13a2SMatthew G Knepley     PetscInt coneSize, p;
2139f074e33SMatthew G Knepley 
2149a5b13a2SMatthew G Knepley     if (d == faceDepth) {
2159a5b13a2SMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
2169a5b13a2SMatthew G Knepley         /* I see no way to do this if we admit faces of different shapes */
2179a5b13a2SMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr);
2189a5b13a2SMatthew G Knepley       }
219a014044eSMatthew G Knepley     } else if (d == cellDepth) {
220a014044eSMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
221a014044eSMatthew G Knepley         /* Number of cell faces may be different from number of cell vertices*/
222a014044eSMatthew G Knepley         ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr);
223a014044eSMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
224a014044eSMatthew G Knepley       }
2259a5b13a2SMatthew G Knepley     } else {
2269a5b13a2SMatthew G Knepley       for (p = pStart[d]; p < pEnd[d]; ++p) {
2279a5b13a2SMatthew G Knepley         ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr);
2289a5b13a2SMatthew G Knepley         ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr);
2299f074e33SMatthew G Knepley       }
2309f074e33SMatthew G Knepley     }
2319f074e33SMatthew G Knepley   }
2329f074e33SMatthew G Knepley   ierr = DMSetUp(idm);CHKERRQ(ierr);
2339f074e33SMatthew G Knepley   /* Get face cones from subsets of cell vertices */
2349a5b13a2SMatthew G Knepley   if (faceSizeAll > 4) SETERRQ1(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll);
2359a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr);
2369a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLSetMultivalued(faceTable, PETSC_FALSE);CHKERRQ(ierr);
2379a5b13a2SMatthew G Knepley   for (d = depth; d > cellDepth; --d) {
2389a5b13a2SMatthew G Knepley     const PetscInt *cone;
2399a5b13a2SMatthew G Knepley     PetscInt        p;
2409a5b13a2SMatthew G Knepley 
2419a5b13a2SMatthew G Knepley     for (p = pStart[d]; p < pEnd[d]; ++p) {
2429a5b13a2SMatthew G Knepley       ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr);
2439a5b13a2SMatthew G Knepley       ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr);
2449a5b13a2SMatthew G Knepley       ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr);
2459a5b13a2SMatthew G Knepley       ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr);
2469f074e33SMatthew G Knepley     }
2479a5b13a2SMatthew G Knepley   }
2489a5b13a2SMatthew G Knepley   for (c = pStart[cellDepth], face = pStart[faceDepth]; c < pEnd[cellDepth]; ++c) {
2499f074e33SMatthew G Knepley     const PetscInt *cellFaces;
2509a5b13a2SMatthew G Knepley     PetscInt        numCellFaces, faceSize, cf, f;
2519f074e33SMatthew G Knepley 
2529a5b13a2SMatthew G Knepley     ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
2539a5b13a2SMatthew G Knepley     if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll);
2549f074e33SMatthew G Knepley     for (cf = 0; cf < numCellFaces; ++cf) {
2559a5b13a2SMatthew G Knepley       const PetscInt  *cellFace = &cellFaces[cf*faceSize];
2569a5b13a2SMatthew G Knepley       PetscHashIJKLKey key;
2579f074e33SMatthew G Knepley 
2589a5b13a2SMatthew G Knepley       if (faceSize == 2) {
2599a5b13a2SMatthew G Knepley         key.i = PetscMin(cellFace[0], cellFace[1]);
2609a5b13a2SMatthew G Knepley         key.j = PetscMax(cellFace[0], cellFace[1]);
2617fcd4ef0SJed Brown         key.k = 0;
2627fcd4ef0SJed Brown         key.l = 0;
2639a5b13a2SMatthew G Knepley       } else {
2649a5b13a2SMatthew G Knepley         key.i = cellFace[0]; key.j = cellFace[1]; key.k = cellFace[2]; key.l = faceSize > 3 ? cellFace[3] : 0;
2659a5b13a2SMatthew G Knepley         ierr = PetscSortInt(faceSize, (PetscInt *) &key);
2669f074e33SMatthew G Knepley       }
2679a5b13a2SMatthew G Knepley       ierr  = PetscHashIJKLGet(faceTable, key, &f);CHKERRQ(ierr);
2689a5b13a2SMatthew G Knepley       if (f < 0) {
2699a5b13a2SMatthew G Knepley         ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr);
2709a5b13a2SMatthew G Knepley         ierr = PetscHashIJKLAdd(faceTable, key, face);CHKERRQ(ierr);
2719a5b13a2SMatthew G Knepley         f    = face++;
2729f074e33SMatthew G Knepley         ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
2739a5b13a2SMatthew G Knepley       } else {
2749a5b13a2SMatthew G Knepley         const PetscInt *cone;
2759a5b13a2SMatthew G Knepley         PetscInt        coneSize, ornt, i, j;
2769f074e33SMatthew G Knepley 
2779a5b13a2SMatthew G Knepley         ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr);
2782e1b13c2SMatthew G. Knepley         /* Orient face: Do not allow reverse orientation at the first vertex */
2799f074e33SMatthew G Knepley         ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr);
2809f074e33SMatthew G Knepley         ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr);
2819a5b13a2SMatthew G Knepley         if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize);
2829a5b13a2SMatthew G Knepley         /* - First find the initial vertex */
2839a5b13a2SMatthew G Knepley         for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break;
2849a5b13a2SMatthew G Knepley         /* - Try forward comparison */
2859a5b13a2SMatthew G Knepley         for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break;
2869a5b13a2SMatthew G Knepley         if (j == faceSize) {
2879a5b13a2SMatthew G Knepley           if ((faceSize == 2) && (i == 1)) ornt = -2;
2889a5b13a2SMatthew G Knepley           else                             ornt = i;
2899a5b13a2SMatthew G Knepley         } else {
2909a5b13a2SMatthew G Knepley           /* - Try backward comparison */
2919a5b13a2SMatthew G Knepley           for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break;
2922e1b13c2SMatthew G. Knepley           if (j == faceSize) {
2932e1b13c2SMatthew G. Knepley             if (i == 0) ornt = -faceSize;
294dc1a705cSMatthew G. Knepley             else        ornt = -i;
2952e1b13c2SMatthew G. Knepley           } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation");
2969a5b13a2SMatthew G Knepley         }
2979a5b13a2SMatthew G Knepley         ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr);
2989f074e33SMatthew G Knepley       }
2999f074e33SMatthew G Knepley     }
300439ece16SMatthew G. Knepley     ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr);
3019f074e33SMatthew G Knepley   }
3029a5b13a2SMatthew G Knepley   if (face != pEnd[faceDepth]) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]);
303c907b753SJed Brown   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
3049a5b13a2SMatthew G Knepley   ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr);
3056551a8c7SMatthew G. Knepley   ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr);
3069a5b13a2SMatthew G Knepley   ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr);
3079a5b13a2SMatthew G Knepley   ierr = DMPlexStratify(idm);CHKERRQ(ierr);
3089f074e33SMatthew G Knepley   PetscFunctionReturn(0);
3099f074e33SMatthew G Knepley }
3109f074e33SMatthew G Knepley 
3119f074e33SMatthew G Knepley #undef __FUNCT__
3129f074e33SMatthew G Knepley #define __FUNCT__ "DMPlexInterpolate"
31380330477SMatthew G. Knepley /*@
31480330477SMatthew G. Knepley   DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc.
31580330477SMatthew G. Knepley 
31680330477SMatthew G. Knepley   Collective on DM
31780330477SMatthew G. Knepley 
31880330477SMatthew G. Knepley   Input Parameter:
3194e3744c5SMatthew G. Knepley . dm - The DMPlex object with only cells and vertices
32080330477SMatthew G. Knepley 
32180330477SMatthew G. Knepley   Output Parameter:
3224e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object
32380330477SMatthew G. Knepley 
32480330477SMatthew G. Knepley   Level: intermediate
32580330477SMatthew G. Knepley 
32680330477SMatthew G. Knepley .keywords: mesh
3274e3744c5SMatthew G. Knepley .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList()
32880330477SMatthew G. Knepley @*/
3299f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt)
3309f074e33SMatthew G Knepley {
3319a5b13a2SMatthew G Knepley   DM             idm, odm = dm;
3322e1b13c2SMatthew G. Knepley   PetscInt       depth, dim, d;
3339f074e33SMatthew G Knepley   PetscErrorCode ierr;
3349f074e33SMatthew G Knepley 
3359f074e33SMatthew G Knepley   PetscFunctionBegin;
3362e1b13c2SMatthew G. Knepley   ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr);
3379f074e33SMatthew G Knepley   ierr = DMPlexGetDimension(dm, &dim);CHKERRQ(ierr);
33876b791aaSMatthew G. Knepley   if (dim <= 1) {
33976b791aaSMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
34076b791aaSMatthew G. Knepley     idm  = dm;
34176b791aaSMatthew G. Knepley   }
3429a5b13a2SMatthew G Knepley   for (d = 1; d < dim; ++d) {
3439a5b13a2SMatthew G Knepley     /* Create interpolated mesh */
3449a5b13a2SMatthew G Knepley     ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr);
3459a5b13a2SMatthew G Knepley     ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr);
3469a5b13a2SMatthew G Knepley     ierr = DMPlexSetDimension(idm, dim);CHKERRQ(ierr);
3472e1b13c2SMatthew G. Knepley     if (depth > 0) {ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr);}
3489a5b13a2SMatthew G Knepley     if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);}
3499a5b13a2SMatthew G Knepley     odm  = idm;
3509f074e33SMatthew G Knepley   }
3519a5b13a2SMatthew G Knepley   *dmInt = idm;
3529f074e33SMatthew G Knepley   PetscFunctionReturn(0);
3539f074e33SMatthew G Knepley }
35407b0a1fcSMatthew G Knepley 
35507b0a1fcSMatthew G Knepley #undef __FUNCT__
35607b0a1fcSMatthew G Knepley #define __FUNCT__ "DMPlexCopyCoordinates"
35780330477SMatthew G. Knepley /*@
35880330477SMatthew G. Knepley   DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices
35980330477SMatthew G. Knepley 
36080330477SMatthew G. Knepley   Collective on DM
36180330477SMatthew G. Knepley 
36280330477SMatthew G. Knepley   Input Parameter:
36380330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates
36480330477SMatthew G. Knepley 
36580330477SMatthew G. Knepley   Output Parameter:
36680330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates
36780330477SMatthew G. Knepley 
36880330477SMatthew G. Knepley   Level: intermediate
36980330477SMatthew G. Knepley 
37080330477SMatthew G. Knepley   Note: This is typically used when adding pieces other than vertices to a mesh
37180330477SMatthew G. Knepley 
37280330477SMatthew G. Knepley .keywords: mesh
3735c386225SMatthew G. Knepley .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMPlexGetCoordinateSection()
37480330477SMatthew G. Knepley @*/
37507b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB)
37607b0a1fcSMatthew G Knepley {
37707b0a1fcSMatthew G Knepley   Vec            coordinatesA, coordinatesB;
37807b0a1fcSMatthew G Knepley   PetscSection   coordSectionA, coordSectionB;
37907b0a1fcSMatthew G Knepley   PetscScalar   *coordsA, *coordsB;
38007b0a1fcSMatthew G Knepley   PetscInt       spaceDim, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d;
38107b0a1fcSMatthew G Knepley   PetscErrorCode ierr;
38207b0a1fcSMatthew G Knepley 
38307b0a1fcSMatthew G Knepley   PetscFunctionBegin;
38476b791aaSMatthew G. Knepley   if (dmA == dmB) PetscFunctionReturn(0);
38507b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr);
38607b0a1fcSMatthew G Knepley   ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr);
38707b0a1fcSMatthew G Knepley   if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB);
38807b0a1fcSMatthew G Knepley   ierr = DMPlexGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr);
38907b0a1fcSMatthew G Knepley   ierr = DMPlexGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr);
39007b0a1fcSMatthew G Knepley   ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr);
39107b0a1fcSMatthew G Knepley   ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr);
39207b0a1fcSMatthew G Knepley   ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr);
39307b0a1fcSMatthew G Knepley   ierr = PetscSectionSetChart(coordSectionB, vStartB, vEndB);CHKERRQ(ierr);
39407b0a1fcSMatthew G Knepley   for (v = vStartB; v < vEndB; ++v) {
39507b0a1fcSMatthew G Knepley     ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr);
39607b0a1fcSMatthew G Knepley     ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr);
39707b0a1fcSMatthew G Knepley   }
39807b0a1fcSMatthew G Knepley   ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr);
39907b0a1fcSMatthew G Knepley   ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr);
40007b0a1fcSMatthew G Knepley   ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr);
40107b0a1fcSMatthew G Knepley   ierr = VecCreate(PetscObjectComm((PetscObject) dmB), &coordinatesB);CHKERRQ(ierr);
40207b0a1fcSMatthew G Knepley   ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr);
40307b0a1fcSMatthew G Knepley   ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr);
4042eb5907fSJed Brown   ierr = VecSetType(coordinatesB,VECSTANDARD);CHKERRQ(ierr);
40507b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr);
40607b0a1fcSMatthew G Knepley   ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr);
40707b0a1fcSMatthew G Knepley   for (v = 0; v < vEndB-vStartB; ++v) {
40807b0a1fcSMatthew G Knepley     for (d = 0; d < spaceDim; ++d) {
40907b0a1fcSMatthew G Knepley       coordsB[v*spaceDim+d] = coordsA[v*spaceDim+d];
41007b0a1fcSMatthew G Knepley     }
41107b0a1fcSMatthew G Knepley   }
41207b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr);
41307b0a1fcSMatthew G Knepley   ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr);
41407b0a1fcSMatthew G Knepley   ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr);
41507b0a1fcSMatthew G Knepley   ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr);
41607b0a1fcSMatthew G Knepley   PetscFunctionReturn(0);
41707b0a1fcSMatthew G Knepley }
4185c386225SMatthew G. Knepley 
4195c386225SMatthew G. Knepley #undef __FUNCT__
4205c386225SMatthew G. Knepley #define __FUNCT__ "DMPlexCopyLabels"
4215c386225SMatthew G. Knepley /*@
4225c386225SMatthew G. Knepley   DMPlexCopyLabels - Copy labels from one mesh to another with a superset of the points
4235c386225SMatthew G. Knepley 
4245c386225SMatthew G. Knepley   Collective on DM
4255c386225SMatthew G. Knepley 
4265c386225SMatthew G. Knepley   Input Parameter:
4275c386225SMatthew G. Knepley . dmA - The DMPlex object with initial labels
4285c386225SMatthew G. Knepley 
4295c386225SMatthew G. Knepley   Output Parameter:
4305c386225SMatthew G. Knepley . dmB - The DMPlex object with copied labels
4315c386225SMatthew G. Knepley 
4325c386225SMatthew G. Knepley   Level: intermediate
4335c386225SMatthew G. Knepley 
4345c386225SMatthew G. Knepley   Note: This is typically used when interpolating or otherwise adding to a mesh
4355c386225SMatthew G. Knepley 
4365c386225SMatthew G. Knepley .keywords: mesh
4375c386225SMatthew G. Knepley .seealso: DMCopyCoordinates(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMPlexGetCoordinateSection()
4385c386225SMatthew G. Knepley @*/
4395c386225SMatthew G. Knepley PetscErrorCode DMPlexCopyLabels(DM dmA, DM dmB)
4405c386225SMatthew G. Knepley {
4415c386225SMatthew G. Knepley   PetscInt       numLabels, l;
4425c386225SMatthew G. Knepley   PetscErrorCode ierr;
4435c386225SMatthew G. Knepley 
4445c386225SMatthew G. Knepley   PetscFunctionBegin;
4455c386225SMatthew G. Knepley   if (dmA == dmB) PetscFunctionReturn(0);
4465c386225SMatthew G. Knepley   ierr = DMPlexGetNumLabels(dmA, &numLabels);CHKERRQ(ierr);
4475c386225SMatthew G. Knepley   for (l = 0; l < numLabels; ++l) {
4485c386225SMatthew G. Knepley     DMLabel     label, labelNew;
4495c386225SMatthew G. Knepley     const char *name;
4505c386225SMatthew G. Knepley     PetscBool   flg;
4515c386225SMatthew G. Knepley 
4525c386225SMatthew G. Knepley     ierr = DMPlexGetLabelName(dmA, l, &name);CHKERRQ(ierr);
4535c386225SMatthew G. Knepley     ierr = PetscStrcmp(name, "depth", &flg);CHKERRQ(ierr);
4545c386225SMatthew G. Knepley     if (flg) continue;
4555c386225SMatthew G. Knepley     ierr = DMPlexGetLabel(dmA, name, &label);CHKERRQ(ierr);
4565c386225SMatthew G. Knepley     ierr = DMLabelDuplicate(label, &labelNew);CHKERRQ(ierr);
4575c386225SMatthew G. Knepley     ierr = DMPlexAddLabel(dmB, labelNew);CHKERRQ(ierr);
4585c386225SMatthew G. Knepley   }
4595c386225SMatthew G. Knepley   PetscFunctionReturn(0);
4605c386225SMatthew G. Knepley }
461f5cedc29SMatthew G. Knepley 
462f5cedc29SMatthew G. Knepley #undef __FUNCT__
4634e3744c5SMatthew G. Knepley #define __FUNCT__ "DMPlexUninterpolate"
4644e3744c5SMatthew G. Knepley /*@
4654e3744c5SMatthew G. Knepley   DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh
4664e3744c5SMatthew G. Knepley 
4674e3744c5SMatthew G. Knepley   Collective on DM
4684e3744c5SMatthew G. Knepley 
4694e3744c5SMatthew G. Knepley   Input Parameter:
4704e3744c5SMatthew G. Knepley . dm - The complete DMPlex object
4714e3744c5SMatthew G. Knepley 
4724e3744c5SMatthew G. Knepley   Output Parameter:
4734e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices
4744e3744c5SMatthew G. Knepley 
4754e3744c5SMatthew G. Knepley   Level: intermediate
4764e3744c5SMatthew G. Knepley 
4774e3744c5SMatthew G. Knepley .keywords: mesh
4784e3744c5SMatthew G. Knepley .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList()
4794e3744c5SMatthew G. Knepley @*/
4804e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint)
4814e3744c5SMatthew G. Knepley {
4824e3744c5SMatthew G. Knepley   DM             udm;
483595d4abbSMatthew G. Knepley   PetscInt       dim, vStart, vEnd, cStart, cEnd, c, maxConeSize = 0, *cone;
4844e3744c5SMatthew G. Knepley   PetscErrorCode ierr;
4854e3744c5SMatthew G. Knepley 
4864e3744c5SMatthew G. Knepley   PetscFunctionBegin;
4874e3744c5SMatthew G. Knepley   ierr = DMPlexGetDimension(dm, &dim);CHKERRQ(ierr);
4884e3744c5SMatthew G. Knepley   if (dim <= 1) {
4894e3744c5SMatthew G. Knepley     ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr);
490595d4abbSMatthew G. Knepley     *dmUnint = dm;
491595d4abbSMatthew G. Knepley     PetscFunctionReturn(0);
4924e3744c5SMatthew G. Knepley   }
493595d4abbSMatthew G. Knepley   ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr);
494595d4abbSMatthew G. Knepley   ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr);
4954e3744c5SMatthew G. Knepley   ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr);
4964e3744c5SMatthew G. Knepley   ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr);
4974e3744c5SMatthew G. Knepley   ierr = DMPlexSetDimension(udm, dim);CHKERRQ(ierr);
4984e3744c5SMatthew G. Knepley   ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr);
4994e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
500595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
5014e3744c5SMatthew G. Knepley 
5024e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
5034e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
5044e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
5054e3744c5SMatthew G. Knepley 
5064e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) ++coneSize;
5074e3744c5SMatthew G. Knepley     }
5084e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
5094e3744c5SMatthew G. Knepley     ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr);
510595d4abbSMatthew G. Knepley     maxConeSize = PetscMax(maxConeSize, coneSize);
5114e3744c5SMatthew G. Knepley   }
5124e3744c5SMatthew G. Knepley   ierr = DMSetUp(udm);CHKERRQ(ierr);
5134e3744c5SMatthew G. Knepley   ierr = PetscMalloc(maxConeSize * sizeof(PetscInt), &cone);CHKERRQ(ierr);
5144e3744c5SMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
515595d4abbSMatthew G. Knepley     PetscInt *closure = NULL, closureSize, cl, coneSize = 0;
5164e3744c5SMatthew G. Knepley 
5174e3744c5SMatthew G. Knepley     ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
5184e3744c5SMatthew G. Knepley     for (cl = 0; cl < closureSize*2; cl += 2) {
5194e3744c5SMatthew G. Knepley       const PetscInt p = closure[cl];
5204e3744c5SMatthew G. Knepley 
5214e3744c5SMatthew G. Knepley       if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p;
5224e3744c5SMatthew G. Knepley     }
5234e3744c5SMatthew G. Knepley     ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr);
5244e3744c5SMatthew G. Knepley     ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr);
5254e3744c5SMatthew G. Knepley   }
5264e3744c5SMatthew G. Knepley   ierr = PetscFree(cone);CHKERRQ(ierr);
5274e3744c5SMatthew G. Knepley   ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr);
5284e3744c5SMatthew G. Knepley   ierr = DMPlexStratify(udm);CHKERRQ(ierr);
5294e3744c5SMatthew G. Knepley   *dmUnint = udm;
5304e3744c5SMatthew G. Knepley   PetscFunctionReturn(0);
5314e3744c5SMatthew G. Knepley }
532