1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h> 4e8f14785SLisandro Dalcin 5e8f14785SLisandro Dalcin /* HashIJKL */ 6e8f14785SLisandro Dalcin 7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h> 8e8f14785SLisandro Dalcin 9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey; 10e8f14785SLisandro Dalcin 11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \ 12e8f14785SLisandro Dalcin PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \ 13e8f14785SLisandro Dalcin PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l))) 14e8f14785SLisandro Dalcin 15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \ 16e8f14785SLisandro Dalcin (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0) 17e8f14785SLisandro Dalcin 18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1) 19e8f14785SLisandro Dalcin 209f074e33SMatthew G Knepley 219f074e33SMatthew G Knepley /* 229a5b13a2SMatthew G Knepley DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell 23cd921712SStefano Zampini This assumes that the mesh is not interpolated from the depth of point p to the vertices 249f074e33SMatthew G Knepley */ 25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 269f074e33SMatthew G Knepley { 279f074e33SMatthew G Knepley const PetscInt *cone = NULL; 28cd921712SStefano Zampini PetscInt coneSize; 299f074e33SMatthew G Knepley PetscErrorCode ierr; 309f074e33SMatthew G Knepley 319f074e33SMatthew G Knepley PetscFunctionBegin; 329f074e33SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 349f074e33SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 35439ece16SMatthew G. Knepley ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr); 36439ece16SMatthew G. Knepley PetscFunctionReturn(0); 37439ece16SMatthew G. Knepley } 38439ece16SMatthew G. Knepley 39439ece16SMatthew G. Knepley /* 40439ece16SMatthew G. Knepley DMPlexRestoreFaces_Internal - Restores the array 41439ece16SMatthew G. Knepley */ 42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 43439ece16SMatthew G. Knepley { 44439ece16SMatthew G. Knepley PetscErrorCode ierr; 45439ece16SMatthew G. Knepley 46439ece16SMatthew G. Knepley PetscFunctionBegin; 47cd921712SStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 48439ece16SMatthew G. Knepley PetscFunctionReturn(0); 49439ece16SMatthew G. Knepley } 50439ece16SMatthew G. Knepley 51439ece16SMatthew G. Knepley /* 52439ece16SMatthew G. Knepley DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone 53439ece16SMatthew G. Knepley */ 54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 55439ece16SMatthew G. Knepley { 56439ece16SMatthew G. Knepley PetscInt *facesTmp; 57439ece16SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 58439ece16SMatthew G. Knepley PetscErrorCode ierr; 59439ece16SMatthew G. Knepley 60439ece16SMatthew G. Knepley PetscFunctionBegin; 61439ece16SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62cd921712SStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 63439ece16SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 6469291d52SBarry Smith if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 659f074e33SMatthew G Knepley switch (dim) { 66c49d9212SMatthew G. Knepley case 1: 67c49d9212SMatthew G. Knepley switch (coneSize) { 68c49d9212SMatthew G. Knepley case 2: 69c49d9212SMatthew G. Knepley if (faces) { 70c49d9212SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 71c49d9212SMatthew G. Knepley *faces = facesTmp; 72c49d9212SMatthew G. Knepley } 73c49d9212SMatthew G. Knepley if (numFaces) *numFaces = 2; 74c49d9212SMatthew G. Knepley if (faceSize) *faceSize = 1; 75c49d9212SMatthew G. Knepley break; 76c49d9212SMatthew G. Knepley default: 7799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 78c49d9212SMatthew G. Knepley } 79c49d9212SMatthew G. Knepley break; 809f074e33SMatthew G Knepley case 2: 819f074e33SMatthew G Knepley switch (coneSize) { 829f074e33SMatthew G Knepley case 3: 839a5b13a2SMatthew G Knepley if (faces) { 849a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 859a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 869a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 879a5b13a2SMatthew G Knepley *faces = facesTmp; 889a5b13a2SMatthew G Knepley } 899a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 909a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 919f074e33SMatthew G Knepley break; 929f074e33SMatthew G Knepley case 4: 939a5b13a2SMatthew G Knepley /* Vertices follow right hand rule */ 949a5b13a2SMatthew G Knepley if (faces) { 959a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 969a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 979a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[3]; 989a5b13a2SMatthew G Knepley facesTmp[6] = cone[3]; facesTmp[7] = cone[0]; 999a5b13a2SMatthew G Knepley *faces = facesTmp; 1009a5b13a2SMatthew G Knepley } 1019a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1029a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1039f074e33SMatthew G Knepley break; 1049f074e33SMatthew G Knepley default: 10599836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1069f074e33SMatthew G Knepley } 1079f074e33SMatthew G Knepley break; 1089f074e33SMatthew G Knepley case 3: 1099f074e33SMatthew G Knepley switch (coneSize) { 1109f074e33SMatthew G Knepley case 3: 1119a5b13a2SMatthew G Knepley if (faces) { 1129a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 1139a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 1149a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 1159a5b13a2SMatthew G Knepley *faces = facesTmp; 1169a5b13a2SMatthew G Knepley } 1179a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 1189a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1199f074e33SMatthew G Knepley break; 1209f074e33SMatthew G Knepley case 4: 1212e1b13c2SMatthew G. Knepley /* Vertices of first face follow right hand rule and normal points away from last vertex */ 1229a5b13a2SMatthew G Knepley if (faces) { 1232e1b13c2SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; 1242e1b13c2SMatthew G. Knepley facesTmp[3] = cone[0]; facesTmp[4] = cone[3]; facesTmp[5] = cone[1]; 1252e1b13c2SMatthew G. Knepley facesTmp[6] = cone[0]; facesTmp[7] = cone[2]; facesTmp[8] = cone[3]; 1262e1b13c2SMatthew G. Knepley facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3]; 1279a5b13a2SMatthew G Knepley *faces = facesTmp; 1289a5b13a2SMatthew G Knepley } 1299a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1309a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 3; 1319a5b13a2SMatthew G Knepley break; 1329a5b13a2SMatthew G Knepley case 8: 133e368ef20SMatthew G. Knepley /* 7--------6 134e368ef20SMatthew G. Knepley /| /| 135e368ef20SMatthew G. Knepley / | / | 136e368ef20SMatthew G. Knepley 4--------5 | 137e368ef20SMatthew G. Knepley | | | | 138e368ef20SMatthew G. Knepley | | | | 139e368ef20SMatthew G. Knepley | 1--------2 140e368ef20SMatthew G. Knepley | / | / 141e368ef20SMatthew G. Knepley |/ |/ 142e368ef20SMatthew G. Knepley 0--------3 143e368ef20SMatthew G. Knepley */ 1449a5b13a2SMatthew G Knepley if (faces) { 14551cfd6a4SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; /* Bottom */ 14651cfd6a4SMatthew G. Knepley facesTmp[4] = cone[4]; facesTmp[5] = cone[5]; facesTmp[6] = cone[6]; facesTmp[7] = cone[7]; /* Top */ 14751cfd6a4SMatthew G. Knepley facesTmp[8] = cone[0]; facesTmp[9] = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */ 14851cfd6a4SMatthew G. Knepley facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */ 14951cfd6a4SMatthew G. Knepley facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */ 15051cfd6a4SMatthew G. Knepley facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */ 1519a5b13a2SMatthew G Knepley *faces = facesTmp; 1529a5b13a2SMatthew G Knepley } 1539a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 6; 1549a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 4; 1559f074e33SMatthew G Knepley break; 1569f074e33SMatthew G Knepley default: 15799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1589f074e33SMatthew G Knepley } 1599f074e33SMatthew G Knepley break; 1609f074e33SMatthew G Knepley default: 16199836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 1629f074e33SMatthew G Knepley } 1639f074e33SMatthew G Knepley PetscFunctionReturn(0); 1649f074e33SMatthew G Knepley } 1659f074e33SMatthew G Knepley 16699836e0eSStefano Zampini /* 16799836e0eSStefano Zampini DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms) 16899836e0eSStefano Zampini */ 16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 17099836e0eSStefano Zampini { 17199836e0eSStefano Zampini PetscInt *facesTmp; 17299836e0eSStefano Zampini PetscInt maxConeSize, maxSupportSize; 17399836e0eSStefano Zampini PetscErrorCode ierr; 17499836e0eSStefano Zampini 17599836e0eSStefano Zampini PetscFunctionBegin; 17699836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17799836e0eSStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 17899836e0eSStefano Zampini ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 17999836e0eSStefano Zampini if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 18099836e0eSStefano Zampini switch (dim) { 18199836e0eSStefano Zampini case 1: 18299836e0eSStefano Zampini switch (coneSize) { 18399836e0eSStefano Zampini case 2: 18499836e0eSStefano Zampini if (faces) { 18599836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 18699836e0eSStefano Zampini *faces = facesTmp; 18799836e0eSStefano Zampini } 18899836e0eSStefano Zampini if (numFaces) *numFaces = 2; 18999836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 19099836e0eSStefano Zampini if (faceSize) *faceSize = 1; 19199836e0eSStefano Zampini break; 19299836e0eSStefano Zampini default: 19399836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 19499836e0eSStefano Zampini } 19599836e0eSStefano Zampini break; 19699836e0eSStefano Zampini case 2: 19799836e0eSStefano Zampini switch (coneSize) { 19899836e0eSStefano Zampini case 4: 19999836e0eSStefano Zampini if (faces) { 20099836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 20199836e0eSStefano Zampini facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; 20299836e0eSStefano Zampini facesTmp[4] = cone[0]; facesTmp[5] = cone[2]; 20399836e0eSStefano Zampini facesTmp[6] = cone[1]; facesTmp[7] = cone[3]; 20499836e0eSStefano Zampini *faces = facesTmp; 20599836e0eSStefano Zampini } 20699836e0eSStefano Zampini if (numFaces) *numFaces = 4; 20799836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 20899836e0eSStefano Zampini if (faceSize) *faceSize = 2; 20999836e0eSStefano Zampini break; 21099836e0eSStefano Zampini default: 21199836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 21299836e0eSStefano Zampini } 21399836e0eSStefano Zampini break; 21499836e0eSStefano Zampini case 3: 21599836e0eSStefano Zampini switch (coneSize) { 21699836e0eSStefano Zampini case 6: /* triangular prism */ 21799836e0eSStefano Zampini if (faces) { 21899836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = -1; /* Bottom */ 21999836e0eSStefano Zampini facesTmp[4] = cone[3]; facesTmp[5] = cone[4]; facesTmp[6] = cone[5]; facesTmp[7] = -1; /* Top */ 22099836e0eSStefano Zampini facesTmp[8] = cone[0]; facesTmp[9] = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */ 22199836e0eSStefano Zampini facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */ 22299836e0eSStefano Zampini facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */ 22399836e0eSStefano Zampini *faces = facesTmp; 22499836e0eSStefano Zampini } 22599836e0eSStefano Zampini if (numFaces) *numFaces = 5; 22699836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 22799836e0eSStefano Zampini if (faceSize) *faceSize = -4; 22899836e0eSStefano Zampini break; 22999836e0eSStefano Zampini default: 23099836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 23199836e0eSStefano Zampini } 23299836e0eSStefano Zampini break; 23399836e0eSStefano Zampini default: 23499836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 23599836e0eSStefano Zampini } 23699836e0eSStefano Zampini PetscFunctionReturn(0); 23799836e0eSStefano Zampini } 23899836e0eSStefano Zampini 23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24099836e0eSStefano Zampini { 24199836e0eSStefano Zampini PetscErrorCode ierr; 24299836e0eSStefano Zampini 24399836e0eSStefano Zampini PetscFunctionBegin; 24499836e0eSStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 24599836e0eSStefano Zampini PetscFunctionReturn(0); 24699836e0eSStefano Zampini } 24799836e0eSStefano Zampini 24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24999836e0eSStefano Zampini { 25099836e0eSStefano Zampini const PetscInt *cone = NULL; 25199836e0eSStefano Zampini PetscInt coneSize; 25299836e0eSStefano Zampini PetscErrorCode ierr; 25399836e0eSStefano Zampini 25499836e0eSStefano Zampini PetscFunctionBegin; 25599836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25799836e0eSStefano Zampini ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 25899836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr); 25999836e0eSStefano Zampini PetscFunctionReturn(0); 26099836e0eSStefano Zampini } 26199836e0eSStefano Zampini 2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */ 2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm) 2649f074e33SMatthew G Knepley { 265d4efc6f1SMatthew G. Knepley DMLabel subpointMap; 2669a5b13a2SMatthew G Knepley PetscHashIJKL faceTable; 2679a5b13a2SMatthew G Knepley PetscInt *pStart, *pEnd; 2689a5b13a2SMatthew G Knepley PetscInt cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d; 26999836e0eSStefano Zampini PetscInt coneSizeH = 0, faceSizeAllH = 0, numCellFacesH = 0, faceH, pMax = -1, dim, outerloop; 27099836e0eSStefano Zampini PetscInt cMax, fMax, eMax, vMax; 2719f074e33SMatthew G Knepley PetscErrorCode ierr; 2729f074e33SMatthew G Knepley 2739f074e33SMatthew G Knepley PetscFunctionBegin; 274c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 275d4efc6f1SMatthew G. Knepley /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */ 276d4efc6f1SMatthew G. Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 277d4efc6f1SMatthew G. Knepley if (subpointMap) ++cellDim; 2789a5b13a2SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2799a5b13a2SMatthew G Knepley ++depth; 2809a5b13a2SMatthew G Knepley ++cellDepth; 2819a5b13a2SMatthew G Knepley cellDim -= depth - cellDepth; 282dcca6d9dSJed Brown ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr); 2839a5b13a2SMatthew G Knepley for (d = depth-1; d >= faceDepth; --d) { 2849a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr); 2859f074e33SMatthew G Knepley } 2869a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr); 2879a5b13a2SMatthew G Knepley pEnd[faceDepth] = pStart[faceDepth]; 2889a5b13a2SMatthew G Knepley for (d = faceDepth-1; d >= 0; --d) { 2899a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2909f074e33SMatthew G Knepley } 29199836e0eSStefano Zampini cMax = fMax = eMax = vMax = PETSC_DETERMINE; 29299836e0eSStefano Zampini ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 29399836e0eSStefano Zampini if (cellDim == dim) { 29499836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 29599836e0eSStefano Zampini pMax = cMax; 29699836e0eSStefano Zampini } else if (cellDim == dim -1) { 29799836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr); 29899836e0eSStefano Zampini pMax = fMax; 29999836e0eSStefano Zampini } 30099836e0eSStefano Zampini pMax = pMax < 0 ? pEnd[cellDepth] : pMax; 30199836e0eSStefano Zampini if (pMax < pEnd[cellDepth]) { 30299836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 30399836e0eSStefano Zampini PetscInt numCellFacesT, faceSize, cf; 3049f074e33SMatthew G Knepley 30599836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr); 30699836e0eSStefano Zampini ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr); 30799836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 30899836e0eSStefano Zampini if (faceSize < 0) { 30999836e0eSStefano Zampini PetscInt *sizes, minv, maxv; 31099836e0eSStefano Zampini 31199836e0eSStefano Zampini /* count vertices of hybrid and non-hybrid faces */ 31299836e0eSStefano Zampini ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr); 31399836e0eSStefano Zampini for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */ 31499836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 31599836e0eSStefano Zampini PetscInt f; 31699836e0eSStefano Zampini 31799836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0); 31899836e0eSStefano Zampini } 31999836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr); 32099836e0eSStefano Zampini minv = sizes[0]; 32199836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesT-1, 0)]; 32299836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv); 32399836e0eSStefano Zampini faceSizeAll = minv; 32499836e0eSStefano Zampini ierr = PetscMemzero(sizes, numCellFacesH*sizeof(PetscInt));CHKERRQ(ierr); 32599836e0eSStefano Zampini for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */ 32699836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 32799836e0eSStefano Zampini PetscInt f; 32899836e0eSStefano Zampini 32999836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0); 33099836e0eSStefano Zampini } 33199836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr); 33299836e0eSStefano Zampini minv = sizes[0]; 33399836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)]; 33499836e0eSStefano Zampini ierr = PetscFree(sizes);CHKERRQ(ierr); 33599836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv); 33699836e0eSStefano Zampini faceSizeAllH = minv; 33799836e0eSStefano Zampini } else { /* the size of the faces in hybrid cells is the same */ 33899836e0eSStefano Zampini faceSizeAll = faceSizeAllH = faceSize; 33999836e0eSStefano Zampini } 34099836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 34199836e0eSStefano Zampini } else if (pEnd[cellDepth] > pStart[cellDepth]) { 34299836e0eSStefano Zampini ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr); 34399836e0eSStefano Zampini } 34499836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 34599836e0eSStefano Zampini 34699836e0eSStefano Zampini /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid grids 34799836e0eSStefano Zampini Then, faces for non-hybrid cells are numbered. 34899836e0eSStefano Zampini This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */ 34999836e0eSStefano Zampini ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 35099836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 35199836e0eSStefano Zampini PetscInt start, end; 35299836e0eSStefano Zampini 35399836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 35499836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 35599836e0eSStefano Zampini for (c = start; c < end; ++c) { 35699836e0eSStefano Zampini const PetscInt *cellFaces; 35799836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 35899836e0eSStefano Zampini 35999836e0eSStefano Zampini if (c < pMax) { 3609a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 3619a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 36299836e0eSStefano Zampini } else { /* Hybrid cell */ 36399836e0eSStefano Zampini const PetscInt *cone; 36499836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 36599836e0eSStefano Zampini 36699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 36799836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 36899836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 36999836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 37099836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 37199836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 37299836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 37399836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 37499836e0eSStefano Zampini } 37599836e0eSStefano Zampini faceSizeInc = faceSize; 3769f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 37799836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 37899836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 3799a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 380e8f14785SLisandro Dalcin PetscHashIter iter; 381e8f14785SLisandro Dalcin PetscBool missing; 3829f074e33SMatthew G Knepley 38399836e0eSStefano Zampini if (faceSizeInc == 2) { 3849a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 3859a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 38699836e0eSStefano Zampini key.k = PETSC_MAX_INT; 38799836e0eSStefano Zampini key.l = PETSC_MAX_INT; 3889a5b13a2SMatthew G Knepley } else { 38999836e0eSStefano Zampini key.i = cellFace[0]; 39099836e0eSStefano Zampini key.j = cellFace[1]; 39199836e0eSStefano Zampini key.k = cellFace[2]; 39299836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 393302440fdSBarry Smith ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 3949f074e33SMatthew G Knepley } 39599836e0eSStefano Zampini /* this check is redundant for non-hybrid meshes */ 39699836e0eSStefano Zampini if (faceSizeH != faceSizeAll) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAll); 397e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 398e8f14785SLisandro Dalcin if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 3999a5b13a2SMatthew G Knepley } 40099836e0eSStefano Zampini if (c < pMax) { 401439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 40299836e0eSStefano Zampini } else { 40399836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 40499836e0eSStefano Zampini } 40599836e0eSStefano Zampini } 40699836e0eSStefano Zampini } 40799836e0eSStefano Zampini pEnd[faceDepth] = face; 40899836e0eSStefano Zampini 40999836e0eSStefano Zampini /* Second pass for hybrid meshes: number hybrid faces */ 41099836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 41199836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 41299836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 41399836e0eSStefano Zampini 41499836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 41599836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 41699836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 41799836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 41899836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 41999836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 42099836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 42199836e0eSStefano Zampini PetscHashIJKLKey key; 42299836e0eSStefano Zampini PetscHashIter iter; 42399836e0eSStefano Zampini PetscBool missing; 42499836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 42599836e0eSStefano Zampini 42699836e0eSStefano Zampini if (faceSize == 2) { 42799836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 42899836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 42999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 43099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 43199836e0eSStefano Zampini } else { 43299836e0eSStefano Zampini key.i = cellFace[0]; 43399836e0eSStefano Zampini key.j = cellFace[1]; 43499836e0eSStefano Zampini key.k = cellFace[2]; 43599836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 43699836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 43799836e0eSStefano Zampini } 43899836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 43999836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 44099836e0eSStefano Zampini if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 44199836e0eSStefano Zampini } 44299836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 44399836e0eSStefano Zampini } 44499836e0eSStefano Zampini faceH = face - pEnd[faceDepth]; 44599836e0eSStefano Zampini if (faceH) { 44699836e0eSStefano Zampini if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth]; 44799836e0eSStefano Zampini else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth]; 44899836e0eSStefano Zampini else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim); 4499a5b13a2SMatthew G Knepley } 4509a5b13a2SMatthew G Knepley pEnd[faceDepth] = face; 4519a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 4529a5b13a2SMatthew G Knepley /* Count new points */ 4539a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4549a5b13a2SMatthew G Knepley numPoints += pEnd[d]-pStart[d]; 4559a5b13a2SMatthew G Knepley } 4569a5b13a2SMatthew G Knepley ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr); 4579a5b13a2SMatthew G Knepley /* Set cone sizes */ 4589a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4599a5b13a2SMatthew G Knepley PetscInt coneSize, p; 4609f074e33SMatthew G Knepley 4619a5b13a2SMatthew G Knepley if (d == faceDepth) { 4629a5b13a2SMatthew G Knepley /* I see no way to do this if we admit faces of different shapes */ 46399836e0eSStefano Zampini for (p = pStart[d]; p < pEnd[d]-faceH; ++p) { 4649a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 4659a5b13a2SMatthew G Knepley } 46699836e0eSStefano Zampini for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 46799836e0eSStefano Zampini ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 46899836e0eSStefano Zampini } 469a014044eSMatthew G Knepley } else if (d == cellDepth) { 470a014044eSMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 471a014044eSMatthew G Knepley /* Number of cell faces may be different from number of cell vertices*/ 47299836e0eSStefano Zampini if (p < pMax) { 473a014044eSMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr); 47499836e0eSStefano Zampini } else { 47599836e0eSStefano Zampini ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr); 47699836e0eSStefano Zampini } 477a014044eSMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 478a014044eSMatthew G Knepley } 4799a5b13a2SMatthew G Knepley } else { 4809a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 4819a5b13a2SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 4829a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 4839f074e33SMatthew G Knepley } 4849f074e33SMatthew G Knepley } 4859f074e33SMatthew G Knepley } 4869f074e33SMatthew G Knepley ierr = DMSetUp(idm);CHKERRQ(ierr); 4879f074e33SMatthew G Knepley /* Get face cones from subsets of cell vertices */ 48899836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 4899a5b13a2SMatthew G Knepley ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 4909a5b13a2SMatthew G Knepley for (d = depth; d > cellDepth; --d) { 4919a5b13a2SMatthew G Knepley const PetscInt *cone; 4929a5b13a2SMatthew G Knepley PetscInt p; 4939a5b13a2SMatthew G Knepley 4949a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 4959a5b13a2SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 4969a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr); 4979a5b13a2SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr); 4989a5b13a2SMatthew G Knepley ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr); 4999f074e33SMatthew G Knepley } 5009a5b13a2SMatthew G Knepley } 50199836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 50299836e0eSStefano Zampini PetscInt start, end; 5039f074e33SMatthew G Knepley 50499836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 50599836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 50699836e0eSStefano Zampini for (c = start; c < end; ++c) { 50799836e0eSStefano Zampini const PetscInt *cellFaces; 50899836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 50999836e0eSStefano Zampini 51099836e0eSStefano Zampini if (c < pMax) { 5119a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 5129a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 51399836e0eSStefano Zampini } else { 51499836e0eSStefano Zampini const PetscInt *cone; 51599836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 51699836e0eSStefano Zampini 51799836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 51899836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 51999836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 52099836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 52199836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 52299836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 52399836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 52499836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 52599836e0eSStefano Zampini } 52699836e0eSStefano Zampini faceSizeInc = faceSize; 5279f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 52899836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 5299a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 530e8f14785SLisandro Dalcin PetscHashIter iter; 531e8f14785SLisandro Dalcin PetscBool missing; 5329f074e33SMatthew G Knepley 53399836e0eSStefano Zampini if (faceSizeInc == 2) { 5349a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 5359a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 53699836e0eSStefano Zampini key.k = PETSC_MAX_INT; 53799836e0eSStefano Zampini key.l = PETSC_MAX_INT; 5389a5b13a2SMatthew G Knepley } else { 539e8f14785SLisandro Dalcin key.i = cellFace[0]; 540e8f14785SLisandro Dalcin key.j = cellFace[1]; 541e8f14785SLisandro Dalcin key.k = cellFace[2]; 54299836e0eSStefano Zampini key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 54399836e0eSStefano Zampini ierr = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr); 5449f074e33SMatthew G Knepley } 545e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 546735a0255SMatthew G. Knepley if (missing) { 5479a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 548e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 549735a0255SMatthew G. Knepley ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 5509a5b13a2SMatthew G Knepley } else { 5519a5b13a2SMatthew G Knepley const PetscInt *cone; 552735a0255SMatthew G. Knepley PetscInt coneSize, ornt, i, j, f; 5539f074e33SMatthew G Knepley 554e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 5559a5b13a2SMatthew G Knepley ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 5562e1b13c2SMatthew G. Knepley /* Orient face: Do not allow reverse orientation at the first vertex */ 5579f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 5589f074e33SMatthew G Knepley ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 5599a5b13a2SMatthew G Knepley if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize); 5609a5b13a2SMatthew G Knepley /* - First find the initial vertex */ 5619a5b13a2SMatthew G Knepley for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break; 5629a5b13a2SMatthew G Knepley /* - Try forward comparison */ 5639a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break; 5649a5b13a2SMatthew G Knepley if (j == faceSize) { 5659a5b13a2SMatthew G Knepley if ((faceSize == 2) && (i == 1)) ornt = -2; 5669a5b13a2SMatthew G Knepley else ornt = i; 5679a5b13a2SMatthew G Knepley } else { 5689a5b13a2SMatthew G Knepley /* - Try backward comparison */ 5699a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break; 5702e1b13c2SMatthew G. Knepley if (j == faceSize) { 5712e1b13c2SMatthew G. Knepley if (i == 0) ornt = -faceSize; 572dc1a705cSMatthew G. Knepley else ornt = -i; 5732e1b13c2SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation"); 5749a5b13a2SMatthew G Knepley } 5759a5b13a2SMatthew G Knepley ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 5769f074e33SMatthew G Knepley } 5779f074e33SMatthew G Knepley } 57899836e0eSStefano Zampini if (c < pMax) { 579439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 58099836e0eSStefano Zampini } else { 58199836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 5829f074e33SMatthew G Knepley } 58399836e0eSStefano Zampini } 58499836e0eSStefano Zampini } 58599836e0eSStefano Zampini /* Second pass for hybrid meshes: orient hybrid faces */ 58699836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 58799836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 58899836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 58999836e0eSStefano Zampini 59099836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 59199836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 59299836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 59399836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 59499836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 59599836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 59699836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 59799836e0eSStefano Zampini PetscHashIJKLKey key; 59899836e0eSStefano Zampini PetscHashIter iter; 59999836e0eSStefano Zampini PetscBool missing; 60099836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 60199836e0eSStefano Zampini 60299836e0eSStefano Zampini if (faceSize == 2) { 60399836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 60499836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 60599836e0eSStefano Zampini key.k = PETSC_MAX_INT; 60699836e0eSStefano Zampini key.l = PETSC_MAX_INT; 60799836e0eSStefano Zampini } else { 60899836e0eSStefano Zampini key.i = cellFace[0]; 60999836e0eSStefano Zampini key.j = cellFace[1]; 61099836e0eSStefano Zampini key.k = cellFace[2]; 61199836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 61299836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 61399836e0eSStefano Zampini } 61499836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 61599836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 61699836e0eSStefano Zampini if (missing) { 61799836e0eSStefano Zampini ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 61899836e0eSStefano Zampini ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 61999836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 62099836e0eSStefano Zampini } else { 62199836e0eSStefano Zampini const PetscInt *cone; 62299836e0eSStefano Zampini PetscInt coneSize, ornt, i, j, f; 62399836e0eSStefano Zampini 62499836e0eSStefano Zampini ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 62599836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 62699836e0eSStefano Zampini /* Orient face: Do not allow reverse orientation at the first vertex */ 62799836e0eSStefano Zampini ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 62899836e0eSStefano Zampini ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 62999836e0eSStefano Zampini if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH); 63099836e0eSStefano Zampini /* - First find the initial vertex */ 63199836e0eSStefano Zampini for (i = 0; i < faceSizeH; ++i) if (cellFace[0] == cone[i]) break; 63299836e0eSStefano Zampini /* - Try forward comparison */ 63399836e0eSStefano Zampini for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+j)%faceSizeH]) break; 63499836e0eSStefano Zampini if (j == faceSizeH) { 63599836e0eSStefano Zampini if ((faceSizeH == 2) && (i == 1)) ornt = -2; 63699836e0eSStefano Zampini else ornt = i; 63799836e0eSStefano Zampini } else { 63899836e0eSStefano Zampini /* - Try backward comparison */ 63999836e0eSStefano Zampini for (j = 0; j < faceSizeH; ++j) if (cellFace[j] != cone[(i+faceSizeH-j)%faceSizeH]) break; 64099836e0eSStefano Zampini if (j == faceSizeH) { 64199836e0eSStefano Zampini if (i == 0) ornt = -faceSizeH; 64299836e0eSStefano Zampini else ornt = -i; 64399836e0eSStefano Zampini } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine face orientation"); 64499836e0eSStefano Zampini } 64599836e0eSStefano Zampini ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 64699836e0eSStefano Zampini } 64799836e0eSStefano Zampini } 64899836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 64999836e0eSStefano Zampini } 65099836e0eSStefano Zampini if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]); 651c907b753SJed Brown ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 6529a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 6536551a8c7SMatthew G. Knepley ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 65499836e0eSStefano Zampini ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 6559a5b13a2SMatthew G Knepley ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr); 6569a5b13a2SMatthew G Knepley ierr = DMPlexStratify(idm);CHKERRQ(ierr); 6579f074e33SMatthew G Knepley PetscFunctionReturn(0); 6589f074e33SMatthew G Knepley } 6599f074e33SMatthew G Knepley 6602e745bdaSMatthew G. Knepley static PetscErrorCode DMPlexOrientPointSF_Internal(DM dm, PetscSF sf) 6612e745bdaSMatthew G. Knepley { 662*cae7fe92SVaclav Hapla PetscInt (*roots)[2], (*leaves)[2]; 6632e745bdaSMatthew G. Knepley const PetscInt *locals; 6642e745bdaSMatthew G. Knepley const PetscSFNode *remotes; 6652e745bdaSMatthew G. Knepley PetscInt nroots, r, nleaves, l; 6662e745bdaSMatthew G. Knepley MPI_Comm comm; 6672e745bdaSMatthew G. Knepley PetscMPIInt rank; 6682e745bdaSMatthew G. Knepley PetscInt debug = 0; 6692e745bdaSMatthew G. Knepley PetscErrorCode ierr; 6702e745bdaSMatthew G. Knepley 6712e745bdaSMatthew G. Knepley PetscFunctionBegin; 6722e745bdaSMatthew G. Knepley ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr); 6733ede9f65SMatthew G. Knepley if (nroots < 0) PetscFunctionReturn(0); 6742e745bdaSMatthew G. Knepley /* If a point p is on the interface, then all its cone points must be also on interface */ 675c8148b97SVaclav Hapla ierr = PetscMalloc2(nroots, &roots, nroots, &leaves);CHKERRQ(ierr); 6762e745bdaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 6772e745bdaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 6782e745bdaSMatthew G. Knepley if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Roots\n");CHKERRQ(ierr);} 6792e745bdaSMatthew G. Knepley for (r = 0; r < nroots; ++r) { 6802e745bdaSMatthew G. Knepley const PetscInt point = r; 6812e745bdaSMatthew G. Knepley const PetscInt *cone; 6822e745bdaSMatthew G. Knepley PetscInt coneSize, ind0, ind1; 6832e745bdaSMatthew G. Knepley 6842e745bdaSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 6852e745bdaSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 6862e745bdaSMatthew G. Knepley if (coneSize > 1) { 6872e745bdaSMatthew G. Knepley /* Translate all points to root numbering */ 6882e745bdaSMatthew G. Knepley ierr = PetscFindInt(cone[0], nleaves, locals, &ind0);CHKERRQ(ierr); 6892e745bdaSMatthew G. Knepley ierr = PetscFindInt(cone[1], nleaves, locals, &ind1);CHKERRQ(ierr); 690*cae7fe92SVaclav Hapla roots[r][0] = ind0 < 0 ? cone[0] : remotes[ind0].index; 691*cae7fe92SVaclav Hapla roots[r][1] = ind1 < 0 ? cone[1] : remotes[ind1].index; 692*cae7fe92SVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: cone=[%D %D] ind=[%D %D] roots=[%D %D]\n", rank, r, cone[0], cone[1], ind0, ind1, roots[r][0], roots[r][1]);CHKERRQ(ierr);} 693c8148b97SVaclav Hapla } else { 694*cae7fe92SVaclav Hapla roots[r][0] = -1; 695*cae7fe92SVaclav Hapla roots[r][1] = -1; 6962e745bdaSMatthew G. Knepley } 6972e745bdaSMatthew G. Knepley } 6982e745bdaSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 699c8148b97SVaclav Hapla for (l = 0; l < nroots; ++l) { 700*cae7fe92SVaclav Hapla leaves[l][0] = -2; 701*cae7fe92SVaclav Hapla leaves[l][1] = -2; 702c8148b97SVaclav Hapla } 7032e745bdaSMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 7042e745bdaSMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 705c8148b97SVaclav Hapla if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 706c8148b97SVaclav Hapla if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referred leaves\n");CHKERRQ(ierr);} 707ca8609c9SVaclav Hapla for (l = 0; l < nroots; ++l) { 708c8148b97SVaclav Hapla const PetscInt point = l; 7092e745bdaSMatthew G. Knepley const PetscInt *cone; 7102e745bdaSMatthew G. Knepley PetscInt coneSize; 7112e745bdaSMatthew G. Knepley 712*cae7fe92SVaclav Hapla if (leaves[point][0] < 0) continue; 713*cae7fe92SVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: %D %D\n", rank, l, leaves[l][0], leaves[l][1]);CHKERRQ(ierr);} 714c8148b97SVaclav Hapla 7152e745bdaSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 7162e745bdaSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 7172e745bdaSMatthew G. Knepley if (coneSize > 1) { 7182e745bdaSMatthew G. Knepley PetscInt ind0, ind1; 7192e745bdaSMatthew G. Knepley 7202e745bdaSMatthew G. Knepley ierr = PetscFindInt(cone[0], nleaves, locals, &ind0);CHKERRQ(ierr); 7212e745bdaSMatthew G. Knepley ierr = PetscFindInt(cone[1], nleaves, locals, &ind1);CHKERRQ(ierr); 7222e745bdaSMatthew G. Knepley if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing cone point %D = %D", point, 0, cone[0]); 7232e745bdaSMatthew G. Knepley if (ind1 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing cone point %D = %D", point, 1, cone[1]); 724*cae7fe92SVaclav Hapla if ((leaves[point][0] != remotes[ind0].index) || (leaves[point][1] != remotes[ind1].index)) { 7252e745bdaSMatthew G. Knepley const PetscInt *newcone; 7262e745bdaSMatthew G. Knepley 7272e745bdaSMatthew G. Knepley /* TODO Generalize this to correct an arbitrary orientation */ 7282e745bdaSMatthew G. Knepley ierr = DMPlexReverseCell(dm, point);CHKERRQ(ierr); 7292e745bdaSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] reversed point %D\n", rank, point);CHKERRQ(ierr);} 7302e745bdaSMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &newcone);CHKERRQ(ierr); 7312e745bdaSMatthew G. Knepley ierr = PetscFindInt(newcone[0], nleaves, locals, &ind0);CHKERRQ(ierr); 7322e745bdaSMatthew G. Knepley ierr = PetscFindInt(newcone[1], nleaves, locals, &ind1);CHKERRQ(ierr); 7332e745bdaSMatthew G. Knepley if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing cone point %D = %D", point, 0, cone[0]); 7342e745bdaSMatthew G. Knepley if (ind1 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing cone point %D = %D", point, 1, cone[1]); 735*cae7fe92SVaclav Hapla if (leaves[point][0] != remotes[ind0].index) 736*cae7fe92SVaclav Hapla SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D Cone[%D] %D --> (%D, %D) != %D Cone[%D] SF Point (%D, %D)", point, 0, cone[0], remotes[ind0].rank, remotes[ind0].index, leaves[point][0], 0, remotes[l].rank, remotes[l].index); 737*cae7fe92SVaclav Hapla if (leaves[point][1] != remotes[ind1].index) 738*cae7fe92SVaclav Hapla SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D Cone[%D] %D --> (%D, %D) != %D Cone[%D] SF Point (%D, %D)", point, 1, cone[1], remotes[ind1].rank, remotes[ind1].index, leaves[point][1], 1, remotes[l].rank, remotes[l].index); 7392e745bdaSMatthew G. Knepley } 7402e745bdaSMatthew G. Knepley } 7412e745bdaSMatthew G. Knepley } 7422e745bdaSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 7432e745bdaSMatthew G. Knepley ierr = PetscFree2(roots, leaves);CHKERRQ(ierr); 7442e745bdaSMatthew G. Knepley PetscFunctionReturn(0); 7452e745bdaSMatthew G. Knepley } 7462e745bdaSMatthew G. Knepley 7477bffde78SMichael Lange /* This interpolates the PointSF in parallel following local interpolation */ 7487bffde78SMichael Lange static PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF, PetscInt depth) 7497bffde78SMichael Lange { 7509852e123SBarry Smith PetscMPIInt size, rank; 7517bffde78SMichael Lange PetscInt p, c, d, dof, offset; 752ffd6914dSSatish Balay PetscInt numLeaves, numRoots, candidatesSize, candidatesRemoteSize; 7537bffde78SMichael Lange const PetscInt *localPoints; 7547bffde78SMichael Lange const PetscSFNode *remotePoints; 7557bffde78SMichael Lange PetscSFNode *candidates, *candidatesRemote, *claims; 7567bffde78SMichael Lange PetscSection candidateSection, candidateSectionRemote, claimSection; 757e8f14785SLisandro Dalcin PetscHMapI leafhash; 758e8f14785SLisandro Dalcin PetscHMapIJ roothash; 7597bffde78SMichael Lange PetscHashIJKey key; 7607bffde78SMichael Lange PetscErrorCode ierr; 7617bffde78SMichael Lange 7627bffde78SMichael Lange PetscFunctionBegin; 7639852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 7647bffde78SMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 7657bffde78SMichael Lange ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 7669852e123SBarry Smith if (size < 2 || numRoots < 0) PetscFunctionReturn(0); 76725afeb17SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 7687bffde78SMichael Lange /* Build hashes of points in the SF for efficient lookup */ 769e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr); 770e8f14785SLisandro Dalcin ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr); 7717bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 772e8f14785SLisandro Dalcin ierr = PetscHMapISet(leafhash, localPoints[p], p);CHKERRQ(ierr); 773e8f14785SLisandro Dalcin key.i = remotePoints[p].index; 774e8f14785SLisandro Dalcin key.j = remotePoints[p].rank; 775e8f14785SLisandro Dalcin ierr = PetscHMapIJSet(roothash, key, p);CHKERRQ(ierr); 7767bffde78SMichael Lange } 7777bffde78SMichael Lange /* Build a section / SFNode array of candidate points in the single-level adjacency of leaves, 7787bffde78SMichael Lange where each candidate is defined by the root entry for the other vertex that defines the edge. */ 7797bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr); 7807bffde78SMichael Lange ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr); 7817bffde78SMichael Lange { 782ffd6914dSSatish Balay PetscInt leaf, root, idx, a, *adj = NULL; 7837bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 7847bffde78SMichael Lange PetscInt adjSize = PETSC_DETERMINE; 7857bffde78SMichael Lange ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr); 7867bffde78SMichael Lange for (a = 0; a < adjSize; ++a) { 787e8f14785SLisandro Dalcin ierr = PetscHMapIGet(leafhash, adj[a], &leaf);CHKERRQ(ierr); 7887bffde78SMichael Lange if (leaf >= 0) {ierr = PetscSectionAddDof(candidateSection, localPoints[p], 1);CHKERRQ(ierr);} 7897bffde78SMichael Lange } 7907bffde78SMichael Lange } 7917bffde78SMichael Lange ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr); 7927bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr); 7937bffde78SMichael Lange ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr); 7947bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 7957bffde78SMichael Lange PetscInt adjSize = PETSC_DETERMINE; 7967bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, localPoints[p], &offset);CHKERRQ(ierr); 7977bffde78SMichael Lange ierr = DMPlexGetAdjacency_Internal(dm, localPoints[p], PETSC_FALSE, PETSC_FALSE, PETSC_FALSE, &adjSize, &adj);CHKERRQ(ierr); 7987bffde78SMichael Lange for (idx = 0, a = 0; a < adjSize; ++a) { 799e8f14785SLisandro Dalcin ierr = PetscHMapIGet(leafhash, adj[a], &root);CHKERRQ(ierr); 8007bffde78SMichael Lange if (root >= 0) candidates[offset+idx++] = remotePoints[root]; 8017bffde78SMichael Lange } 8027bffde78SMichael Lange } 8037bffde78SMichael Lange ierr = PetscFree(adj);CHKERRQ(ierr); 8047bffde78SMichael Lange } 8057bffde78SMichael Lange /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */ 8067bffde78SMichael Lange { 8077bffde78SMichael Lange PetscSF sfMulti, sfInverse, sfCandidates; 8087bffde78SMichael Lange PetscInt *remoteOffsets; 8097bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 8107bffde78SMichael Lange ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr); 8117bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr); 8127bffde78SMichael Lange ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr); 8137bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr); 8147bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr); 8157bffde78SMichael Lange ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr); 8167bffde78SMichael Lange ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 8177bffde78SMichael Lange ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 8187bffde78SMichael Lange ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr); 8197bffde78SMichael Lange ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr); 8207bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 8217bffde78SMichael Lange } 8227bffde78SMichael Lange /* Walk local roots and check for each remote candidate whether we know all required points, 8237bffde78SMichael Lange either from owning it or having a root entry in the point SF. If we do we place a claim 8247bffde78SMichael Lange by replacing the vertex number with our edge ID. */ 8257bffde78SMichael Lange { 8267bffde78SMichael Lange PetscInt idx, root, joinSize, vertices[2]; 8277bffde78SMichael Lange const PetscInt *rootdegree, *join = NULL; 8287bffde78SMichael Lange ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr); 8297bffde78SMichael Lange ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr); 8307bffde78SMichael Lange /* Loop remote edge connections and put in a claim if both vertices are known */ 8317bffde78SMichael Lange for (idx = 0, p = 0; p < numRoots; ++p) { 8327bffde78SMichael Lange for (d = 0; d < rootdegree[p]; ++d) { 8337bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr); 8347bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr); 8357bffde78SMichael Lange for (c = 0; c < dof; ++c) { 8367bffde78SMichael Lange /* We own both vertices, so we claim the edge by replacing vertex with edge */ 8377bffde78SMichael Lange if (candidatesRemote[offset+c].rank == rank) { 8387bffde78SMichael Lange vertices[0] = p; vertices[1] = candidatesRemote[offset+c].index; 8397bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 8407bffde78SMichael Lange if (joinSize == 1) candidatesRemote[offset+c].index = join[0]; 8417bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 8427bffde78SMichael Lange continue; 8437bffde78SMichael Lange } 8447bffde78SMichael Lange /* If we own one vertex and share a root with the other, we claim it */ 845e8f14785SLisandro Dalcin key.i = candidatesRemote[offset+c].index; 846e8f14785SLisandro Dalcin key.j = candidatesRemote[offset+c].rank; 847e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 8487bffde78SMichael Lange if (root >= 0) { 8497bffde78SMichael Lange vertices[0] = p; vertices[1] = localPoints[root]; 8507bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 8517bffde78SMichael Lange if (joinSize == 1) { 8527bffde78SMichael Lange candidatesRemote[offset+c].index = join[0]; 8537bffde78SMichael Lange candidatesRemote[offset+c].rank = rank; 8547bffde78SMichael Lange } 8557bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 8567bffde78SMichael Lange } 8577bffde78SMichael Lange } 8587bffde78SMichael Lange idx++; 8597bffde78SMichael Lange } 8607bffde78SMichael Lange } 8617bffde78SMichael Lange } 8627bffde78SMichael Lange /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */ 8637bffde78SMichael Lange { 8647bffde78SMichael Lange PetscSF sfMulti, sfClaims, sfPointNew; 865e8f14785SLisandro Dalcin PetscHMapI claimshash; 8667bffde78SMichael Lange PetscInt size, pStart, pEnd, root, joinSize, numLocalNew; 8677bffde78SMichael Lange PetscInt *remoteOffsets, *localPointsNew, vertices[2]; 868ffd6914dSSatish Balay const PetscInt *join = NULL; 8697bffde78SMichael Lange PetscSFNode *remotePointsNew; 8707bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 8717bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr); 8727bffde78SMichael Lange ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr); 8737bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr); 8747bffde78SMichael Lange ierr = PetscSectionGetStorageSize(claimSection, &size);CHKERRQ(ierr); 8757bffde78SMichael Lange ierr = PetscMalloc1(size, &claims);CHKERRQ(ierr); 8767bffde78SMichael Lange ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 8777bffde78SMichael Lange ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 8787bffde78SMichael Lange ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr); 8797bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 8807bffde78SMichael Lange /* Walk the original section of local supports and add an SF entry for each updated item */ 881e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr); 8827bffde78SMichael Lange for (p = 0; p < numRoots; ++p) { 8837bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr); 8847bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr); 8857bffde78SMichael Lange for (d = 0; d < dof; ++d) { 8867bffde78SMichael Lange if (candidates[offset+d].index != claims[offset+d].index) { 887e8f14785SLisandro Dalcin key.i = candidates[offset+d].index; 888e8f14785SLisandro Dalcin key.j = candidates[offset+d].rank; 889e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 8907bffde78SMichael Lange if (root >= 0) { 8917bffde78SMichael Lange vertices[0] = p; vertices[1] = localPoints[root]; 8927bffde78SMichael Lange ierr = DMPlexGetJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 893e8f14785SLisandro Dalcin if (joinSize == 1) {ierr = PetscHMapISet(claimshash, join[0], offset+d);CHKERRQ(ierr);} 8947bffde78SMichael Lange ierr = DMPlexRestoreJoin(dm, 2, vertices, &joinSize, &join);CHKERRQ(ierr); 8957bffde78SMichael Lange } 8967bffde78SMichael Lange } 8977bffde78SMichael Lange } 8987bffde78SMichael Lange } 8997bffde78SMichael Lange /* Create new pointSF from hashed claims */ 900e8f14785SLisandro Dalcin ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr); 9017bffde78SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 9027bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr); 9037bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr); 9047bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 9057bffde78SMichael Lange localPointsNew[p] = localPoints[p]; 9067bffde78SMichael Lange remotePointsNew[p].index = remotePoints[p].index; 9077bffde78SMichael Lange remotePointsNew[p].rank = remotePoints[p].rank; 9087bffde78SMichael Lange } 909f3190fc2SToby Isaac p = numLeaves; 910e8f14785SLisandro Dalcin ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr); 911f3190fc2SToby Isaac ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr); 9127bffde78SMichael Lange for (p = numLeaves; p < numLeaves + numLocalNew; ++p) { 913e8f14785SLisandro Dalcin ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr); 9147bffde78SMichael Lange remotePointsNew[p] = claims[offset]; 9157bffde78SMichael Lange } 9167bffde78SMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr); 9177bffde78SMichael Lange ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 9187bffde78SMichael Lange ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr); 9197bffde78SMichael Lange ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr); 920e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr); 9217bffde78SMichael Lange } 922e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr); 923e8f14785SLisandro Dalcin ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr); 9247bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr); 9257bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr); 9267bffde78SMichael Lange ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr); 9277bffde78SMichael Lange ierr = PetscFree(candidates);CHKERRQ(ierr); 9287bffde78SMichael Lange ierr = PetscFree(candidatesRemote);CHKERRQ(ierr); 9297bffde78SMichael Lange ierr = PetscFree(claims);CHKERRQ(ierr); 93025afeb17SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 9317bffde78SMichael Lange PetscFunctionReturn(0); 9327bffde78SMichael Lange } 9337bffde78SMichael Lange 9340c795ddcSMatthew G. Knepley /*@C 93580330477SMatthew G. Knepley DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc. 93680330477SMatthew G. Knepley 93780330477SMatthew G. Knepley Collective on DM 93880330477SMatthew G. Knepley 939e56d480eSMatthew G. Knepley Input Parameters: 940e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices 94110a67516SMatthew G. Knepley - dmInt - The interpolated DM 94280330477SMatthew G. Knepley 94380330477SMatthew G. Knepley Output Parameter: 9444e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object 94580330477SMatthew G. Knepley 94680330477SMatthew G. Knepley Level: intermediate 94780330477SMatthew G. Knepley 94895452b02SPatrick Sanan Notes: 94995452b02SPatrick Sanan It does not copy over the coordinates. 95043eeeb2dSStefano Zampini 95180330477SMatthew G. Knepley .keywords: mesh 95243eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 95380330477SMatthew G. Knepley @*/ 9549f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt) 9559f074e33SMatthew G Knepley { 9569a5b13a2SMatthew G Knepley DM idm, odm = dm; 9577bffde78SMichael Lange PetscSF sfPoint; 9582e1b13c2SMatthew G. Knepley PetscInt depth, dim, d; 95910a67516SMatthew G. Knepley const char *name; 9609f074e33SMatthew G Knepley PetscErrorCode ierr; 9619f074e33SMatthew G Knepley 9629f074e33SMatthew G Knepley PetscFunctionBegin; 96310a67516SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96410a67516SMatthew G. Knepley PetscValidPointer(dmInt, 2); 965a72f3261SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 9662e1b13c2SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 967c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 968b21b8912SMatthew G. Knepley if ((depth == dim) || (dim <= 1)) { 96976b791aaSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 97076b791aaSMatthew G. Knepley idm = dm; 971b21b8912SMatthew G. Knepley } else { 9729a5b13a2SMatthew G Knepley for (d = 1; d < dim; ++d) { 9739a5b13a2SMatthew G Knepley /* Create interpolated mesh */ 97410a67516SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr); 9759a5b13a2SMatthew G Knepley ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr); 976c73cfb54SMatthew G. Knepley ierr = DMSetDimension(idm, dim);CHKERRQ(ierr); 9777bffde78SMichael Lange if (depth > 0) { 9787bffde78SMichael Lange ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr); 9797bffde78SMichael Lange ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr); 9807bffde78SMichael Lange ierr = DMPlexInterpolatePointSF(idm, sfPoint, depth);CHKERRQ(ierr); 9817bffde78SMichael Lange } 9829a5b13a2SMatthew G Knepley if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);} 9839a5b13a2SMatthew G Knepley odm = idm; 9849f074e33SMatthew G Knepley } 98510a67516SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) dm, &name);CHKERRQ(ierr); 98610a67516SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) idm, name);CHKERRQ(ierr); 98710a67516SMatthew G. Knepley ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr); 98810a67516SMatthew G. Knepley ierr = DMCopyLabels(dm, idm);CHKERRQ(ierr); 9892e745bdaSMatthew G. Knepley ierr = DMGetPointSF(idm, &sfPoint);CHKERRQ(ierr); 9902e745bdaSMatthew G. Knepley ierr = DMPlexOrientPointSF_Internal(idm, sfPoint);CHKERRQ(ierr); 99184699f70SSatish Balay } 99243eeeb2dSStefano Zampini { 99343eeeb2dSStefano Zampini PetscBool isper; 99443eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 99543eeeb2dSStefano Zampini const DMBoundaryType *bd; 99643eeeb2dSStefano Zampini 99743eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 99843eeeb2dSStefano Zampini ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr); 99943eeeb2dSStefano Zampini } 10009a5b13a2SMatthew G Knepley *dmInt = idm; 1001a72f3261SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 10029f074e33SMatthew G Knepley PetscFunctionReturn(0); 10039f074e33SMatthew G Knepley } 100407b0a1fcSMatthew G Knepley 100580330477SMatthew G. Knepley /*@ 100680330477SMatthew G. Knepley DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices 100780330477SMatthew G. Knepley 100880330477SMatthew G. Knepley Collective on DM 100980330477SMatthew G. Knepley 101080330477SMatthew G. Knepley Input Parameter: 101180330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates 101280330477SMatthew G. Knepley 101380330477SMatthew G. Knepley Output Parameter: 101480330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates 101580330477SMatthew G. Knepley 101680330477SMatthew G. Knepley Level: intermediate 101780330477SMatthew G. Knepley 101880330477SMatthew G. Knepley Note: This is typically used when adding pieces other than vertices to a mesh 101980330477SMatthew G. Knepley 102080330477SMatthew G. Knepley .keywords: mesh 102165f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection() 102280330477SMatthew G. Knepley @*/ 102307b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB) 102407b0a1fcSMatthew G Knepley { 102507b0a1fcSMatthew G Knepley Vec coordinatesA, coordinatesB; 102643eeeb2dSStefano Zampini VecType vtype; 102707b0a1fcSMatthew G Knepley PetscSection coordSectionA, coordSectionB; 102807b0a1fcSMatthew G Knepley PetscScalar *coordsA, *coordsB; 10290bedd6beSMatthew G. Knepley PetscInt spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d; 103043eeeb2dSStefano Zampini PetscInt cStartA, cEndA, cStartB, cEndB, cS, cE; 103143eeeb2dSStefano Zampini PetscBool lc = PETSC_FALSE; 103207b0a1fcSMatthew G Knepley PetscErrorCode ierr; 103307b0a1fcSMatthew G Knepley 103407b0a1fcSMatthew G Knepley PetscFunctionBegin; 103543eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 103643eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 103776b791aaSMatthew G. Knepley if (dmA == dmB) PetscFunctionReturn(0); 103807b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr); 103907b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr); 104007b0a1fcSMatthew G Knepley if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB); 104143eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr); 104243eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr); 104369d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr); 104469d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr); 1045972bc18aSToby Isaac if (coordSectionA == coordSectionB) PetscFunctionReturn(0); 10460bedd6beSMatthew G. Knepley ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr); 10470bedd6beSMatthew G. Knepley if (!Nf) PetscFunctionReturn(0); 10480bedd6beSMatthew G. Knepley if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf); 1049df26b574SMatthew G. Knepley if (!coordSectionB) { 1050df26b574SMatthew G. Knepley PetscInt dim; 1051df26b574SMatthew G. Knepley 1052df26b574SMatthew G. Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr); 1053df26b574SMatthew G. Knepley ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr); 1054df26b574SMatthew G. Knepley ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr); 1055df26b574SMatthew G. Knepley ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr); 1056df26b574SMatthew G. Knepley } 105707b0a1fcSMatthew G Knepley ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr); 105807b0a1fcSMatthew G Knepley ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr); 105907b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr); 106043eeeb2dSStefano Zampini ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr); 106143eeeb2dSStefano Zampini if (cStartA <= cS && cS < cEndA) { /* localized coordinates */ 106243eeeb2dSStefano Zampini if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cellls in first DM %d != %d in the second DM", cEndA-cStartA, cEndB-cStartB); 106343eeeb2dSStefano Zampini cS = cS - cStartA + cStartB; 106443eeeb2dSStefano Zampini cE = vEndB; 106543eeeb2dSStefano Zampini lc = PETSC_TRUE; 106643eeeb2dSStefano Zampini } else { 106743eeeb2dSStefano Zampini cS = vStartB; 106843eeeb2dSStefano Zampini cE = vEndB; 106943eeeb2dSStefano Zampini } 107043eeeb2dSStefano Zampini ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr); 107107b0a1fcSMatthew G Knepley for (v = vStartB; v < vEndB; ++v) { 107207b0a1fcSMatthew G Knepley ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr); 107307b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr); 107407b0a1fcSMatthew G Knepley } 107543eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 107643eeeb2dSStefano Zampini PetscInt c; 107743eeeb2dSStefano Zampini 107843eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 107943eeeb2dSStefano Zampini PetscInt dof; 108043eeeb2dSStefano Zampini 108143eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 108243eeeb2dSStefano Zampini ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr); 108343eeeb2dSStefano Zampini ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr); 108443eeeb2dSStefano Zampini } 108543eeeb2dSStefano Zampini } 108607b0a1fcSMatthew G Knepley ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr); 108707b0a1fcSMatthew G Knepley ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr); 108807b0a1fcSMatthew G Knepley ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr); 10898b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr); 109007b0a1fcSMatthew G Knepley ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr); 109107b0a1fcSMatthew G Knepley ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr); 109243eeeb2dSStefano Zampini ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr); 109343eeeb2dSStefano Zampini ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr); 109443eeeb2dSStefano Zampini ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr); 109543eeeb2dSStefano Zampini ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr); 109607b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr); 109707b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr); 109807b0a1fcSMatthew G Knepley for (v = 0; v < vEndB-vStartB; ++v) { 109943eeeb2dSStefano Zampini PetscInt offA, offB; 110043eeeb2dSStefano Zampini 110143eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr); 110243eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr); 110307b0a1fcSMatthew G Knepley for (d = 0; d < spaceDim; ++d) { 110443eeeb2dSStefano Zampini coordsB[offB+d] = coordsA[offA+d]; 110543eeeb2dSStefano Zampini } 110643eeeb2dSStefano Zampini } 110743eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 110843eeeb2dSStefano Zampini PetscInt c; 110943eeeb2dSStefano Zampini 111043eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 111143eeeb2dSStefano Zampini PetscInt dof, offA, offB; 111243eeeb2dSStefano Zampini 111343eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr); 111443eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr); 111543eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 111643eeeb2dSStefano Zampini ierr = PetscMemcpy(coordsB + offB,coordsA + offA,dof*sizeof(*coordsB));CHKERRQ(ierr); 111707b0a1fcSMatthew G Knepley } 111807b0a1fcSMatthew G Knepley } 111907b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr); 112007b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr); 112107b0a1fcSMatthew G Knepley ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr); 112207b0a1fcSMatthew G Knepley ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr); 112307b0a1fcSMatthew G Knepley PetscFunctionReturn(0); 112407b0a1fcSMatthew G Knepley } 11255c386225SMatthew G. Knepley 11264e3744c5SMatthew G. Knepley /*@ 11274e3744c5SMatthew G. Knepley DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh 11284e3744c5SMatthew G. Knepley 11294e3744c5SMatthew G. Knepley Collective on DM 11304e3744c5SMatthew G. Knepley 11314e3744c5SMatthew G. Knepley Input Parameter: 11324e3744c5SMatthew G. Knepley . dm - The complete DMPlex object 11334e3744c5SMatthew G. Knepley 11344e3744c5SMatthew G. Knepley Output Parameter: 11354e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices 11364e3744c5SMatthew G. Knepley 11374e3744c5SMatthew G. Knepley Level: intermediate 11384e3744c5SMatthew G. Knepley 113995452b02SPatrick Sanan Notes: 114095452b02SPatrick Sanan It does not copy over the coordinates. 114143eeeb2dSStefano Zampini 11424e3744c5SMatthew G. Knepley .keywords: mesh 114343eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 11444e3744c5SMatthew G. Knepley @*/ 11454e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint) 11464e3744c5SMatthew G. Knepley { 11474e3744c5SMatthew G. Knepley DM udm; 1148c9f63434SStefano Zampini PetscInt dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone; 11494e3744c5SMatthew G. Knepley PetscErrorCode ierr; 11504e3744c5SMatthew G. Knepley 11514e3744c5SMatthew G. Knepley PetscFunctionBegin; 115243eeeb2dSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 115343eeeb2dSStefano Zampini PetscValidPointer(dmUnint, 2); 1154c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 11554e3744c5SMatthew G. Knepley if (dim <= 1) { 11564e3744c5SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 1157595d4abbSMatthew G. Knepley *dmUnint = dm; 1158595d4abbSMatthew G. Knepley PetscFunctionReturn(0); 11594e3744c5SMatthew G. Knepley } 1160595d4abbSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1161595d4abbSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1162c9f63434SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 11634e3744c5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr); 11644e3744c5SMatthew G. Knepley ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr); 1165c73cfb54SMatthew G. Knepley ierr = DMSetDimension(udm, dim);CHKERRQ(ierr); 11664e3744c5SMatthew G. Knepley ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr); 11674e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1168595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 11694e3744c5SMatthew G. Knepley 11704e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 11714e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 11724e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 11734e3744c5SMatthew G. Knepley 11744e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++coneSize; 11754e3744c5SMatthew G. Knepley } 11764e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 11774e3744c5SMatthew G. Knepley ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr); 1178595d4abbSMatthew G. Knepley maxConeSize = PetscMax(maxConeSize, coneSize); 11794e3744c5SMatthew G. Knepley } 11804e3744c5SMatthew G. Knepley ierr = DMSetUp(udm);CHKERRQ(ierr); 1181785e854fSJed Brown ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr); 11824e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1183595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 11844e3744c5SMatthew G. Knepley 11854e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 11864e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 11874e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 11884e3744c5SMatthew G. Knepley 11894e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p; 11904e3744c5SMatthew G. Knepley } 11914e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 11924e3744c5SMatthew G. Knepley ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr); 11934e3744c5SMatthew G. Knepley } 11944e3744c5SMatthew G. Knepley ierr = PetscFree(cone);CHKERRQ(ierr); 1195c9f63434SStefano Zampini ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 11964e3744c5SMatthew G. Knepley ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr); 11974e3744c5SMatthew G. Knepley ierr = DMPlexStratify(udm);CHKERRQ(ierr); 11985c7de58aSMatthew G. Knepley /* Reduce SF */ 11995c7de58aSMatthew G. Knepley { 12005c7de58aSMatthew G. Knepley PetscSF sfPoint, sfPointUn; 12015c7de58aSMatthew G. Knepley const PetscSFNode *remotePoints; 12025c7de58aSMatthew G. Knepley const PetscInt *localPoints; 12035c7de58aSMatthew G. Knepley PetscSFNode *remotePointsUn; 12045c7de58aSMatthew G. Knepley PetscInt *localPointsUn; 12055c7de58aSMatthew G. Knepley PetscInt vEnd, numRoots, numLeaves, l; 12065c7de58aSMatthew G. Knepley PetscInt numLeavesUn = 0, n = 0; 12075c7de58aSMatthew G. Knepley PetscErrorCode ierr; 12085c7de58aSMatthew G. Knepley 12095c7de58aSMatthew G. Knepley /* Get original SF information */ 12105c7de58aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 12115c7de58aSMatthew G. Knepley ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr); 12125c7de58aSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr); 12135c7de58aSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 12145c7de58aSMatthew G. Knepley /* Allocate space for cells and vertices */ 12155c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++; 12165c7de58aSMatthew G. Knepley /* Fill in leaves */ 12175c7de58aSMatthew G. Knepley if (vEnd >= 0) { 12185c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr); 12195c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr); 12205c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; l++) { 12215c7de58aSMatthew G. Knepley if (localPoints[l] < vEnd) { 12225c7de58aSMatthew G. Knepley localPointsUn[n] = localPoints[l]; 12235c7de58aSMatthew G. Knepley remotePointsUn[n].rank = remotePoints[l].rank; 12245c7de58aSMatthew G. Knepley remotePointsUn[n].index = remotePoints[l].index; 12255c7de58aSMatthew G. Knepley ++n; 12265c7de58aSMatthew G. Knepley } 12275c7de58aSMatthew G. Knepley } 12285c7de58aSMatthew G. Knepley if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn); 12295c7de58aSMatthew G. Knepley ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr); 12305c7de58aSMatthew G. Knepley } 12315c7de58aSMatthew G. Knepley } 123243eeeb2dSStefano Zampini { 123343eeeb2dSStefano Zampini PetscBool isper; 123443eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 123543eeeb2dSStefano Zampini const DMBoundaryType *bd; 123643eeeb2dSStefano Zampini 123743eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 123843eeeb2dSStefano Zampini ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr); 123943eeeb2dSStefano Zampini } 124043eeeb2dSStefano Zampini 12414e3744c5SMatthew G. Knepley *dmUnint = udm; 12424e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 12434e3744c5SMatthew G. Knepley } 1244