1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h> 4e8f14785SLisandro Dalcin 5e8f14785SLisandro Dalcin /* HashIJKL */ 6e8f14785SLisandro Dalcin 7e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h> 8e8f14785SLisandro Dalcin 9e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey; 10e8f14785SLisandro Dalcin 11e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \ 12e8f14785SLisandro Dalcin PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \ 13e8f14785SLisandro Dalcin PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l))) 14e8f14785SLisandro Dalcin 15e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \ 16e8f14785SLisandro Dalcin (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0) 17e8f14785SLisandro Dalcin 18e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1) 19e8f14785SLisandro Dalcin 209f074e33SMatthew G Knepley 219f074e33SMatthew G Knepley /* 229a5b13a2SMatthew G Knepley DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell 23cd921712SStefano Zampini This assumes that the mesh is not interpolated from the depth of point p to the vertices 249f074e33SMatthew G Knepley */ 25439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 269f074e33SMatthew G Knepley { 279f074e33SMatthew G Knepley const PetscInt *cone = NULL; 28cd921712SStefano Zampini PetscInt coneSize; 299f074e33SMatthew G Knepley PetscErrorCode ierr; 309f074e33SMatthew G Knepley 319f074e33SMatthew G Knepley PetscFunctionBegin; 329f074e33SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 339f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 349f074e33SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 35439ece16SMatthew G. Knepley ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr); 36439ece16SMatthew G. Knepley PetscFunctionReturn(0); 37439ece16SMatthew G. Knepley } 38439ece16SMatthew G. Knepley 39439ece16SMatthew G. Knepley /* 40439ece16SMatthew G. Knepley DMPlexRestoreFaces_Internal - Restores the array 41439ece16SMatthew G. Knepley */ 42439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 43439ece16SMatthew G. Knepley { 44439ece16SMatthew G. Knepley PetscErrorCode ierr; 45439ece16SMatthew G. Knepley 46439ece16SMatthew G. Knepley PetscFunctionBegin; 47cd921712SStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 48439ece16SMatthew G. Knepley PetscFunctionReturn(0); 49439ece16SMatthew G. Knepley } 50439ece16SMatthew G. Knepley 51439ece16SMatthew G. Knepley /* 52439ece16SMatthew G. Knepley DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone 53439ece16SMatthew G. Knepley */ 54439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 55439ece16SMatthew G. Knepley { 56439ece16SMatthew G. Knepley PetscInt *facesTmp; 57439ece16SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 58439ece16SMatthew G. Knepley PetscErrorCode ierr; 59439ece16SMatthew G. Knepley 60439ece16SMatthew G. Knepley PetscFunctionBegin; 61439ece16SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62cd921712SStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 63439ece16SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 6469291d52SBarry Smith if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 659f074e33SMatthew G Knepley switch (dim) { 66c49d9212SMatthew G. Knepley case 1: 67c49d9212SMatthew G. Knepley switch (coneSize) { 68c49d9212SMatthew G. Knepley case 2: 69c49d9212SMatthew G. Knepley if (faces) { 70c49d9212SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 71c49d9212SMatthew G. Knepley *faces = facesTmp; 72c49d9212SMatthew G. Knepley } 73c49d9212SMatthew G. Knepley if (numFaces) *numFaces = 2; 74c49d9212SMatthew G. Knepley if (faceSize) *faceSize = 1; 75c49d9212SMatthew G. Knepley break; 76c49d9212SMatthew G. Knepley default: 7799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 78c49d9212SMatthew G. Knepley } 79c49d9212SMatthew G. Knepley break; 809f074e33SMatthew G Knepley case 2: 819f074e33SMatthew G Knepley switch (coneSize) { 829f074e33SMatthew G Knepley case 3: 839a5b13a2SMatthew G Knepley if (faces) { 849a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 859a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 869a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 879a5b13a2SMatthew G Knepley *faces = facesTmp; 889a5b13a2SMatthew G Knepley } 899a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 909a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 919f074e33SMatthew G Knepley break; 929f074e33SMatthew G Knepley case 4: 939a5b13a2SMatthew G Knepley /* Vertices follow right hand rule */ 949a5b13a2SMatthew G Knepley if (faces) { 959a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 969a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 979a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[3]; 989a5b13a2SMatthew G Knepley facesTmp[6] = cone[3]; facesTmp[7] = cone[0]; 999a5b13a2SMatthew G Knepley *faces = facesTmp; 1009a5b13a2SMatthew G Knepley } 1019a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1029a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1039f074e33SMatthew G Knepley break; 1049f074e33SMatthew G Knepley default: 10599836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1069f074e33SMatthew G Knepley } 1079f074e33SMatthew G Knepley break; 1089f074e33SMatthew G Knepley case 3: 1099f074e33SMatthew G Knepley switch (coneSize) { 1109f074e33SMatthew G Knepley case 3: 1119a5b13a2SMatthew G Knepley if (faces) { 1129a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 1139a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 1149a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 1159a5b13a2SMatthew G Knepley *faces = facesTmp; 1169a5b13a2SMatthew G Knepley } 1179a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 1189a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1199f074e33SMatthew G Knepley break; 1209f074e33SMatthew G Knepley case 4: 1212e1b13c2SMatthew G. Knepley /* Vertices of first face follow right hand rule and normal points away from last vertex */ 1229a5b13a2SMatthew G Knepley if (faces) { 1232e1b13c2SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; 1242e1b13c2SMatthew G. Knepley facesTmp[3] = cone[0]; facesTmp[4] = cone[3]; facesTmp[5] = cone[1]; 1252e1b13c2SMatthew G. Knepley facesTmp[6] = cone[0]; facesTmp[7] = cone[2]; facesTmp[8] = cone[3]; 1262e1b13c2SMatthew G. Knepley facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3]; 1279a5b13a2SMatthew G Knepley *faces = facesTmp; 1289a5b13a2SMatthew G Knepley } 1299a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1309a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 3; 1319a5b13a2SMatthew G Knepley break; 1329a5b13a2SMatthew G Knepley case 8: 133e368ef20SMatthew G. Knepley /* 7--------6 134e368ef20SMatthew G. Knepley /| /| 135e368ef20SMatthew G. Knepley / | / | 136e368ef20SMatthew G. Knepley 4--------5 | 137e368ef20SMatthew G. Knepley | | | | 138e368ef20SMatthew G. Knepley | | | | 139e368ef20SMatthew G. Knepley | 1--------2 140e368ef20SMatthew G. Knepley | / | / 141e368ef20SMatthew G. Knepley |/ |/ 142e368ef20SMatthew G. Knepley 0--------3 143e368ef20SMatthew G. Knepley */ 1449a5b13a2SMatthew G Knepley if (faces) { 14551cfd6a4SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; /* Bottom */ 14651cfd6a4SMatthew G. Knepley facesTmp[4] = cone[4]; facesTmp[5] = cone[5]; facesTmp[6] = cone[6]; facesTmp[7] = cone[7]; /* Top */ 14751cfd6a4SMatthew G. Knepley facesTmp[8] = cone[0]; facesTmp[9] = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */ 14851cfd6a4SMatthew G. Knepley facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */ 14951cfd6a4SMatthew G. Knepley facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */ 15051cfd6a4SMatthew G. Knepley facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */ 1519a5b13a2SMatthew G Knepley *faces = facesTmp; 1529a5b13a2SMatthew G Knepley } 1539a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 6; 1549a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 4; 1559f074e33SMatthew G Knepley break; 1569f074e33SMatthew G Knepley default: 15799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1589f074e33SMatthew G Knepley } 1599f074e33SMatthew G Knepley break; 1609f074e33SMatthew G Knepley default: 16199836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 1629f074e33SMatthew G Knepley } 1639f074e33SMatthew G Knepley PetscFunctionReturn(0); 1649f074e33SMatthew G Knepley } 1659f074e33SMatthew G Knepley 16699836e0eSStefano Zampini /* 16799836e0eSStefano Zampini DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms) 16899836e0eSStefano Zampini */ 16999836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 17099836e0eSStefano Zampini { 17199836e0eSStefano Zampini PetscInt *facesTmp; 17299836e0eSStefano Zampini PetscInt maxConeSize, maxSupportSize; 17399836e0eSStefano Zampini PetscErrorCode ierr; 17499836e0eSStefano Zampini 17599836e0eSStefano Zampini PetscFunctionBegin; 17699836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17799836e0eSStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 17899836e0eSStefano Zampini ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 17999836e0eSStefano Zampini if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 18099836e0eSStefano Zampini switch (dim) { 18199836e0eSStefano Zampini case 1: 18299836e0eSStefano Zampini switch (coneSize) { 18399836e0eSStefano Zampini case 2: 18499836e0eSStefano Zampini if (faces) { 18599836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 18699836e0eSStefano Zampini *faces = facesTmp; 18799836e0eSStefano Zampini } 18899836e0eSStefano Zampini if (numFaces) *numFaces = 2; 18999836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 19099836e0eSStefano Zampini if (faceSize) *faceSize = 1; 19199836e0eSStefano Zampini break; 19299836e0eSStefano Zampini default: 19399836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 19499836e0eSStefano Zampini } 19599836e0eSStefano Zampini break; 19699836e0eSStefano Zampini case 2: 19799836e0eSStefano Zampini switch (coneSize) { 19899836e0eSStefano Zampini case 4: 19999836e0eSStefano Zampini if (faces) { 20099836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 20199836e0eSStefano Zampini facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; 20299836e0eSStefano Zampini facesTmp[4] = cone[0]; facesTmp[5] = cone[2]; 20399836e0eSStefano Zampini facesTmp[6] = cone[1]; facesTmp[7] = cone[3]; 20499836e0eSStefano Zampini *faces = facesTmp; 20599836e0eSStefano Zampini } 20699836e0eSStefano Zampini if (numFaces) *numFaces = 4; 20799836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 20899836e0eSStefano Zampini if (faceSize) *faceSize = 2; 20999836e0eSStefano Zampini break; 21099836e0eSStefano Zampini default: 21199836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 21299836e0eSStefano Zampini } 21399836e0eSStefano Zampini break; 21499836e0eSStefano Zampini case 3: 21599836e0eSStefano Zampini switch (coneSize) { 21699836e0eSStefano Zampini case 6: /* triangular prism */ 21799836e0eSStefano Zampini if (faces) { 21899836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = -1; /* Bottom */ 21999836e0eSStefano Zampini facesTmp[4] = cone[3]; facesTmp[5] = cone[4]; facesTmp[6] = cone[5]; facesTmp[7] = -1; /* Top */ 22099836e0eSStefano Zampini facesTmp[8] = cone[0]; facesTmp[9] = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */ 22199836e0eSStefano Zampini facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */ 22299836e0eSStefano Zampini facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */ 22399836e0eSStefano Zampini *faces = facesTmp; 22499836e0eSStefano Zampini } 22599836e0eSStefano Zampini if (numFaces) *numFaces = 5; 22699836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 22799836e0eSStefano Zampini if (faceSize) *faceSize = -4; 22899836e0eSStefano Zampini break; 22999836e0eSStefano Zampini default: 23099836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 23199836e0eSStefano Zampini } 23299836e0eSStefano Zampini break; 23399836e0eSStefano Zampini default: 23499836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 23599836e0eSStefano Zampini } 23699836e0eSStefano Zampini PetscFunctionReturn(0); 23799836e0eSStefano Zampini } 23899836e0eSStefano Zampini 23999836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24099836e0eSStefano Zampini { 24199836e0eSStefano Zampini PetscErrorCode ierr; 24299836e0eSStefano Zampini 24399836e0eSStefano Zampini PetscFunctionBegin; 24499836e0eSStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 24599836e0eSStefano Zampini PetscFunctionReturn(0); 24699836e0eSStefano Zampini } 24799836e0eSStefano Zampini 24899836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24999836e0eSStefano Zampini { 25099836e0eSStefano Zampini const PetscInt *cone = NULL; 25199836e0eSStefano Zampini PetscInt coneSize; 25299836e0eSStefano Zampini PetscErrorCode ierr; 25399836e0eSStefano Zampini 25499836e0eSStefano Zampini PetscFunctionBegin; 25599836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25799836e0eSStefano Zampini ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 25899836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr); 25999836e0eSStefano Zampini PetscFunctionReturn(0); 26099836e0eSStefano Zampini } 26199836e0eSStefano Zampini 2629a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */ 2639a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm) 2649f074e33SMatthew G Knepley { 265d4efc6f1SMatthew G. Knepley DMLabel subpointMap; 2669a5b13a2SMatthew G Knepley PetscHashIJKL faceTable; 2679a5b13a2SMatthew G Knepley PetscInt *pStart, *pEnd; 2689a5b13a2SMatthew G Knepley PetscInt cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d; 269e9fa77a1SMatthew G. Knepley PetscInt coneSizeH = 0, faceSizeAllH = 0, faceSizeAllT = 0, numCellFacesH = 0, faceT = 0, faceH, pMax = -1, dim, outerloop; 27099836e0eSStefano Zampini PetscInt cMax, fMax, eMax, vMax; 2719f074e33SMatthew G Knepley PetscErrorCode ierr; 2729f074e33SMatthew G Knepley 2739f074e33SMatthew G Knepley PetscFunctionBegin; 274c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 275d4efc6f1SMatthew G. Knepley /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */ 276d4efc6f1SMatthew G. Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 277d4efc6f1SMatthew G. Knepley if (subpointMap) ++cellDim; 2789a5b13a2SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2799a5b13a2SMatthew G Knepley ++depth; 2809a5b13a2SMatthew G Knepley ++cellDepth; 2819a5b13a2SMatthew G Knepley cellDim -= depth - cellDepth; 282dcca6d9dSJed Brown ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr); 2839a5b13a2SMatthew G Knepley for (d = depth-1; d >= faceDepth; --d) { 2849a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr); 2859f074e33SMatthew G Knepley } 2869a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr); 2879a5b13a2SMatthew G Knepley pEnd[faceDepth] = pStart[faceDepth]; 2889a5b13a2SMatthew G Knepley for (d = faceDepth-1; d >= 0; --d) { 2899a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2909f074e33SMatthew G Knepley } 29199836e0eSStefano Zampini cMax = fMax = eMax = vMax = PETSC_DETERMINE; 29299836e0eSStefano Zampini ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 29399836e0eSStefano Zampini if (cellDim == dim) { 29499836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 29599836e0eSStefano Zampini pMax = cMax; 29699836e0eSStefano Zampini } else if (cellDim == dim -1) { 29799836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr); 29899836e0eSStefano Zampini pMax = fMax; 29999836e0eSStefano Zampini } 30099836e0eSStefano Zampini pMax = pMax < 0 ? pEnd[cellDepth] : pMax; 30199836e0eSStefano Zampini if (pMax < pEnd[cellDepth]) { 30299836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 30399836e0eSStefano Zampini PetscInt numCellFacesT, faceSize, cf; 3049f074e33SMatthew G Knepley 305e9fa77a1SMatthew G. Knepley /* First get normal cell face size (we now allow hybrid cells to meet normal cells on either hybrid or normal faces */ 3065ebdaad1SMatthew G. Knepley if (pStart[cellDepth] < pMax) {ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);} 307e9fa77a1SMatthew G. Knepley 30899836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr); 30999836e0eSStefano Zampini ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr); 31099836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 31199836e0eSStefano Zampini if (faceSize < 0) { 31299836e0eSStefano Zampini PetscInt *sizes, minv, maxv; 31399836e0eSStefano Zampini 31499836e0eSStefano Zampini /* count vertices of hybrid and non-hybrid faces */ 31599836e0eSStefano Zampini ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr); 31699836e0eSStefano Zampini for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */ 31799836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 31899836e0eSStefano Zampini PetscInt f; 31999836e0eSStefano Zampini 32099836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0); 32199836e0eSStefano Zampini } 32299836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr); 32399836e0eSStefano Zampini minv = sizes[0]; 32499836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesT-1, 0)]; 32599836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv); 326e9fa77a1SMatthew G. Knepley faceSizeAllT = minv; 327580bdb30SBarry Smith ierr = PetscArrayzero(sizes, numCellFacesH);CHKERRQ(ierr); 32899836e0eSStefano Zampini for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */ 32999836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 33099836e0eSStefano Zampini PetscInt f; 33199836e0eSStefano Zampini 33299836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0); 33399836e0eSStefano Zampini } 33499836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr); 33599836e0eSStefano Zampini minv = sizes[0]; 33699836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)]; 33799836e0eSStefano Zampini ierr = PetscFree(sizes);CHKERRQ(ierr); 33899836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv); 33999836e0eSStefano Zampini faceSizeAllH = minv; 3405ebdaad1SMatthew G. Knepley if (!faceSizeAll) faceSizeAll = faceSizeAllT; 34199836e0eSStefano Zampini } else { /* the size of the faces in hybrid cells is the same */ 342e9fa77a1SMatthew G. Knepley faceSizeAll = faceSizeAllH = faceSizeAllT = faceSize; 34399836e0eSStefano Zampini } 34499836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 34599836e0eSStefano Zampini } else if (pEnd[cellDepth] > pStart[cellDepth]) { 34699836e0eSStefano Zampini ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr); 347a1bcd873SMatthew G. Knepley faceSizeAllH = faceSizeAllT = faceSizeAll; 34899836e0eSStefano Zampini } 34999836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 35099836e0eSStefano Zampini 351b135d7daSStefano Zampini /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid faces 35299836e0eSStefano Zampini Then, faces for non-hybrid cells are numbered. 35399836e0eSStefano Zampini This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */ 35499836e0eSStefano Zampini ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 35599836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 35699836e0eSStefano Zampini PetscInt start, end; 35799836e0eSStefano Zampini 35899836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 35999836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 36099836e0eSStefano Zampini for (c = start; c < end; ++c) { 36199836e0eSStefano Zampini const PetscInt *cellFaces; 362e9fa77a1SMatthew G. Knepley PetscInt numCellFaces, faceSize, faceSizeInc, faceSizeCheck, cf; 36399836e0eSStefano Zampini 36499836e0eSStefano Zampini if (c < pMax) { 3659a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 3669a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 367e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAll; 36899836e0eSStefano Zampini } else { /* Hybrid cell */ 36999836e0eSStefano Zampini const PetscInt *cone; 37099836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 37199836e0eSStefano Zampini 37299836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 37399836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 37499836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 37599836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 37699836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 37799836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 37899836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 37999836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 380e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAllT; 38199836e0eSStefano Zampini } 38299836e0eSStefano Zampini faceSizeInc = faceSize; 3839f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 38499836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 38599836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 3869a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 387e8f14785SLisandro Dalcin PetscHashIter iter; 388e8f14785SLisandro Dalcin PetscBool missing; 3899f074e33SMatthew G Knepley 39099836e0eSStefano Zampini if (faceSizeInc == 2) { 3919a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 3929a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 39399836e0eSStefano Zampini key.k = PETSC_MAX_INT; 39499836e0eSStefano Zampini key.l = PETSC_MAX_INT; 3959a5b13a2SMatthew G Knepley } else { 39699836e0eSStefano Zampini key.i = cellFace[0]; 39799836e0eSStefano Zampini key.j = cellFace[1]; 39899836e0eSStefano Zampini key.k = cellFace[2]; 39999836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 400302440fdSBarry Smith ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 4019f074e33SMatthew G Knepley } 40299836e0eSStefano Zampini /* this check is redundant for non-hybrid meshes */ 403e9fa77a1SMatthew G. Knepley if (faceSizeH != faceSizeCheck) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeCheck); 404e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 405e9fa77a1SMatthew G. Knepley if (missing) { 406e9fa77a1SMatthew G. Knepley ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr); 407e9fa77a1SMatthew G. Knepley if (c >= pMax) ++faceT; 408e9fa77a1SMatthew G. Knepley } 4099a5b13a2SMatthew G Knepley } 41099836e0eSStefano Zampini if (c < pMax) { 411439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 41299836e0eSStefano Zampini } else { 41399836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 41499836e0eSStefano Zampini } 41599836e0eSStefano Zampini } 41699836e0eSStefano Zampini } 41799836e0eSStefano Zampini pEnd[faceDepth] = face; 41899836e0eSStefano Zampini 41999836e0eSStefano Zampini /* Second pass for hybrid meshes: number hybrid faces */ 42099836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 42199836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 42299836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 42399836e0eSStefano Zampini 42499836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 42599836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 42699836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 42799836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 42899836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 42999836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 43099836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 43199836e0eSStefano Zampini PetscHashIJKLKey key; 43299836e0eSStefano Zampini PetscHashIter iter; 43399836e0eSStefano Zampini PetscBool missing; 43499836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 43599836e0eSStefano Zampini 43699836e0eSStefano Zampini if (faceSize == 2) { 43799836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 43899836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 43999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 44099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 44199836e0eSStefano Zampini } else { 44299836e0eSStefano Zampini key.i = cellFace[0]; 44399836e0eSStefano Zampini key.j = cellFace[1]; 44499836e0eSStefano Zampini key.k = cellFace[2]; 44599836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 44699836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 44799836e0eSStefano Zampini } 44899836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 44999836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 45099836e0eSStefano Zampini if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 45199836e0eSStefano Zampini } 45299836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 45399836e0eSStefano Zampini } 45499836e0eSStefano Zampini faceH = face - pEnd[faceDepth]; 45599836e0eSStefano Zampini if (faceH) { 45699836e0eSStefano Zampini if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth]; 45799836e0eSStefano Zampini else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth]; 45899836e0eSStefano Zampini else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim); 4599a5b13a2SMatthew G Knepley } 4609a5b13a2SMatthew G Knepley pEnd[faceDepth] = face; 4619a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 4629a5b13a2SMatthew G Knepley /* Count new points */ 4639a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4649a5b13a2SMatthew G Knepley numPoints += pEnd[d]-pStart[d]; 4659a5b13a2SMatthew G Knepley } 4669a5b13a2SMatthew G Knepley ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr); 4679a5b13a2SMatthew G Knepley /* Set cone sizes */ 4689a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4699a5b13a2SMatthew G Knepley PetscInt coneSize, p; 4709f074e33SMatthew G Knepley 4719a5b13a2SMatthew G Knepley if (d == faceDepth) { 472e9fa77a1SMatthew G. Knepley /* Now we have two cases: */ 473e9fa77a1SMatthew G. Knepley if (faceSizeAll == faceSizeAllT) { 4749a5b13a2SMatthew G Knepley /* I see no way to do this if we admit faces of different shapes */ 47599836e0eSStefano Zampini for (p = pStart[d]; p < pEnd[d]-faceH; ++p) { 4769a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 4779a5b13a2SMatthew G Knepley } 47899836e0eSStefano Zampini for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 47999836e0eSStefano Zampini ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 48099836e0eSStefano Zampini } 481e9fa77a1SMatthew G. Knepley } else if (faceSizeAll == faceSizeAllH) { 482e9fa77a1SMatthew G. Knepley for (p = pStart[d]; p < pStart[d]+faceT; ++p) { 483e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllT);CHKERRQ(ierr); 484e9fa77a1SMatthew G. Knepley } 485e9fa77a1SMatthew G. Knepley for (p = pStart[d]+faceT; p < pEnd[d]-faceH; ++p) { 486e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 487e9fa77a1SMatthew G. Knepley } 488e9fa77a1SMatthew G. Knepley for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 489e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 490e9fa77a1SMatthew G. Knepley } 491e9fa77a1SMatthew G. Knepley } else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent faces sizes N: %D T: %D H: %D", faceSizeAll, faceSizeAllT, faceSizeAllH); 492a014044eSMatthew G Knepley } else if (d == cellDepth) { 493a014044eSMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 494a014044eSMatthew G Knepley /* Number of cell faces may be different from number of cell vertices*/ 49599836e0eSStefano Zampini if (p < pMax) { 496a014044eSMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr); 49799836e0eSStefano Zampini } else { 49899836e0eSStefano Zampini ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr); 49999836e0eSStefano Zampini } 500a014044eSMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 501a014044eSMatthew G Knepley } 5029a5b13a2SMatthew G Knepley } else { 5039a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5049a5b13a2SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 5059a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 5069f074e33SMatthew G Knepley } 5079f074e33SMatthew G Knepley } 5089f074e33SMatthew G Knepley } 5099f074e33SMatthew G Knepley ierr = DMSetUp(idm);CHKERRQ(ierr); 5109f074e33SMatthew G Knepley /* Get face cones from subsets of cell vertices */ 51199836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 5129a5b13a2SMatthew G Knepley ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 5139a5b13a2SMatthew G Knepley for (d = depth; d > cellDepth; --d) { 5149a5b13a2SMatthew G Knepley const PetscInt *cone; 5159a5b13a2SMatthew G Knepley PetscInt p; 5169a5b13a2SMatthew G Knepley 5179a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5189a5b13a2SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 5199a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr); 5209a5b13a2SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr); 5219a5b13a2SMatthew G Knepley ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr); 5229f074e33SMatthew G Knepley } 5239a5b13a2SMatthew G Knepley } 52499836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 52599836e0eSStefano Zampini PetscInt start, end; 5269f074e33SMatthew G Knepley 52799836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 52899836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 52999836e0eSStefano Zampini for (c = start; c < end; ++c) { 53099836e0eSStefano Zampini const PetscInt *cellFaces; 53199836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 53299836e0eSStefano Zampini 53399836e0eSStefano Zampini if (c < pMax) { 5349a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 5359a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 53699836e0eSStefano Zampini } else { 53799836e0eSStefano Zampini const PetscInt *cone; 53899836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 53999836e0eSStefano Zampini 54099836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 54199836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 54299836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 54399836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 54499836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 54599836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 54699836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 54799836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 54899836e0eSStefano Zampini } 54999836e0eSStefano Zampini faceSizeInc = faceSize; 5509f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 55199836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 5529a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 553e8f14785SLisandro Dalcin PetscHashIter iter; 554e8f14785SLisandro Dalcin PetscBool missing; 5559f074e33SMatthew G Knepley 55699836e0eSStefano Zampini if (faceSizeInc == 2) { 5579a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 5589a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 55999836e0eSStefano Zampini key.k = PETSC_MAX_INT; 56099836e0eSStefano Zampini key.l = PETSC_MAX_INT; 5619a5b13a2SMatthew G Knepley } else { 562e8f14785SLisandro Dalcin key.i = cellFace[0]; 563e8f14785SLisandro Dalcin key.j = cellFace[1]; 564e8f14785SLisandro Dalcin key.k = cellFace[2]; 56599836e0eSStefano Zampini key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 56699836e0eSStefano Zampini ierr = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr); 5679f074e33SMatthew G Knepley } 568e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 569735a0255SMatthew G. Knepley if (missing) { 5709a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 571e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 572735a0255SMatthew G. Knepley ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 5739a5b13a2SMatthew G Knepley } else { 5749a5b13a2SMatthew G Knepley const PetscInt *cone; 575735a0255SMatthew G. Knepley PetscInt coneSize, ornt, i, j, f; 5769f074e33SMatthew G Knepley 577e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 5789a5b13a2SMatthew G Knepley ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 5792e1b13c2SMatthew G. Knepley /* Orient face: Do not allow reverse orientation at the first vertex */ 5809f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 5819f074e33SMatthew G Knepley ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 5829a5b13a2SMatthew G Knepley if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize); 5839a5b13a2SMatthew G Knepley /* - First find the initial vertex */ 5849a5b13a2SMatthew G Knepley for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break; 5859a5b13a2SMatthew G Knepley /* - Try forward comparison */ 5869a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break; 5879a5b13a2SMatthew G Knepley if (j == faceSize) { 5889a5b13a2SMatthew G Knepley if ((faceSize == 2) && (i == 1)) ornt = -2; 5899a5b13a2SMatthew G Knepley else ornt = i; 5909a5b13a2SMatthew G Knepley } else { 5919a5b13a2SMatthew G Knepley /* - Try backward comparison */ 5929a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break; 5932e1b13c2SMatthew G. Knepley if (j == faceSize) { 5942e1b13c2SMatthew G. Knepley if (i == 0) ornt = -faceSize; 595dc1a705cSMatthew G. Knepley else ornt = -i; 596e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 5979a5b13a2SMatthew G Knepley } 5989a5b13a2SMatthew G Knepley ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 5999f074e33SMatthew G Knepley } 6009f074e33SMatthew G Knepley } 60199836e0eSStefano Zampini if (c < pMax) { 602439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 60399836e0eSStefano Zampini } else { 60499836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 6059f074e33SMatthew G Knepley } 60699836e0eSStefano Zampini } 60799836e0eSStefano Zampini } 60899836e0eSStefano Zampini /* Second pass for hybrid meshes: orient hybrid faces */ 60999836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 61099836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 61199836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 61299836e0eSStefano Zampini 61399836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 61499836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 61599836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 61699836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 61799836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 61899836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 61999836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 62099836e0eSStefano Zampini PetscHashIJKLKey key; 62199836e0eSStefano Zampini PetscHashIter iter; 62299836e0eSStefano Zampini PetscBool missing; 62399836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 62499836e0eSStefano Zampini 62599836e0eSStefano Zampini if (faceSize == 2) { 62699836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 62799836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 62899836e0eSStefano Zampini key.k = PETSC_MAX_INT; 62999836e0eSStefano Zampini key.l = PETSC_MAX_INT; 63099836e0eSStefano Zampini } else { 63199836e0eSStefano Zampini key.i = cellFace[0]; 63299836e0eSStefano Zampini key.j = cellFace[1]; 63399836e0eSStefano Zampini key.k = cellFace[2]; 63499836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 63599836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 63699836e0eSStefano Zampini } 63799836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 63899836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 63999836e0eSStefano Zampini if (missing) { 64099836e0eSStefano Zampini ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 64199836e0eSStefano Zampini ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 64299836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 64399836e0eSStefano Zampini } else { 644e9fa77a1SMatthew G. Knepley PetscInt fv[4] = {0, 1, 2, 3}; 64599836e0eSStefano Zampini const PetscInt *cone; 64699836e0eSStefano Zampini PetscInt coneSize, ornt, i, j, f; 647a74221b0SStefano Zampini PetscBool q2h = PETSC_FALSE; 64899836e0eSStefano Zampini 64999836e0eSStefano Zampini ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 65099836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 65199836e0eSStefano Zampini /* Orient face: Do not allow reverse orientation at the first vertex */ 65299836e0eSStefano Zampini ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 65399836e0eSStefano Zampini ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 65499836e0eSStefano Zampini if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH); 655e9fa77a1SMatthew G. Knepley /* Hybrid faces are stored as tensor products of edges, so to compare them to normal faces, we have to flip */ 656a74221b0SStefano Zampini if (faceSize == 4 && c >= pMax && faceSizeAll != faceSizeAllT && f < pEnd[faceDepth] - faceH) {q2h = PETSC_TRUE; fv[2] = 3; fv[3] = 2;} 65799836e0eSStefano Zampini /* - First find the initial vertex */ 658e9fa77a1SMatthew G. Knepley for (i = 0; i < faceSizeH; ++i) if (cellFace[fv[0]] == cone[i]) break; 659a74221b0SStefano Zampini if (q2h) { /* Matt's case: hybrid faces meeting with non-hybrid faces. This is a case that is not (and will not be) supported in general by the refinements */ 66099836e0eSStefano Zampini /* - Try forward comparison */ 661e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+j)%faceSizeH]) break; 66299836e0eSStefano Zampini if (j == faceSizeH) { 66399836e0eSStefano Zampini if ((faceSizeH == 2) && (i == 1)) ornt = -2; 66499836e0eSStefano Zampini else ornt = i; 66599836e0eSStefano Zampini } else { 66699836e0eSStefano Zampini /* - Try backward comparison */ 667e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+faceSizeH-j)%faceSizeH]) break; 66899836e0eSStefano Zampini if (j == faceSizeH) { 66999836e0eSStefano Zampini if (i == 0) ornt = -faceSizeH; 67099836e0eSStefano Zampini else ornt = -i; 671e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 67299836e0eSStefano Zampini } 673a74221b0SStefano Zampini } else { 674a74221b0SStefano Zampini /* when matching hybrid faces in 3D, only few cases are possible. 675a74221b0SStefano Zampini Face traversal however can no longer follow the usual convention, this seems a serious issue to me */ 676a74221b0SStefano Zampini PetscInt tquad_map[4][4] = { {PETSC_MIN_INT, 0,PETSC_MIN_INT,PETSC_MIN_INT}, 677a74221b0SStefano Zampini { -1,PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT}, 678a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT, 1}, 679a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT, -2,PETSC_MIN_INT} }; 680a74221b0SStefano Zampini PetscInt i2; 681a74221b0SStefano Zampini 682a74221b0SStefano Zampini /* find the second vertex */ 683a74221b0SStefano Zampini for (i2 = 0; i2 < faceSizeH; ++i2) if (cellFace[fv[1]] == cone[i2]) break; 684a74221b0SStefano Zampini switch (faceSizeH) { 685a74221b0SStefano Zampini case 2: 686a74221b0SStefano Zampini ornt = i ? -2 : 0; 687a74221b0SStefano Zampini break; 688a74221b0SStefano Zampini case 4: 689a74221b0SStefano Zampini ornt = tquad_map[i][i2]; 690a74221b0SStefano Zampini break; 691a74221b0SStefano Zampini default: 692a74221b0SStefano Zampini SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unhandled face size %D for face %D in cell %D", faceSizeH, f, c); 693a74221b0SStefano Zampini 694a74221b0SStefano Zampini } 695a74221b0SStefano Zampini } 69699836e0eSStefano Zampini ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 69799836e0eSStefano Zampini } 69899836e0eSStefano Zampini } 69999836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 70099836e0eSStefano Zampini } 70199836e0eSStefano Zampini if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]); 702c907b753SJed Brown ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 7039a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 7046551a8c7SMatthew G. Knepley ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 70599836e0eSStefano Zampini ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 7069a5b13a2SMatthew G Knepley ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr); 7079a5b13a2SMatthew G Knepley ierr = DMPlexStratify(idm);CHKERRQ(ierr); 7089f074e33SMatthew G Knepley PetscFunctionReturn(0); 7099f074e33SMatthew G Knepley } 7109f074e33SMatthew G Knepley 711fa01033eSVaclav Hapla PetscErrorCode DMPlexOrientCell(DM dm, PetscInt p, PetscInt masterConeSize, const PetscInt masterCone[]) 712fa01033eSVaclav Hapla { 71367aa0e3dSVaclav Hapla PetscInt coneSize; 71467aa0e3dSVaclav Hapla PetscInt start1=0; 71567aa0e3dSVaclav Hapla PetscBool reverse1=PETSC_FALSE; 716a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 717b8e38d09SVaclav Hapla PetscErrorCode ierr; 718b8e38d09SVaclav Hapla 719b8e38d09SVaclav Hapla PetscFunctionBegin; 720b8e38d09SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 721b8e38d09SVaclav Hapla if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */ 722b8e38d09SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 723b8e38d09SVaclav Hapla ierr = DMPlexFixFaceOrientations_Orient_Private(coneSize, masterConeSize, masterCone, cone, &start1, &reverse1);CHKERRQ(ierr); 724b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG) 725b8e38d09SVaclav Hapla if (PetscUnlikely(cone[start1] != masterCone[0])) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[0]", start1, cone[start1], masterCone[0]); 726b8e38d09SVaclav Hapla #endif 727b8e38d09SVaclav Hapla ierr = DMPlexOrientCell_Internal(dm, p, start1, reverse1);CHKERRQ(ierr); 728b8e38d09SVaclav Hapla #if defined(PETSC_USE_DEBUG) 72967aa0e3dSVaclav Hapla { 73067aa0e3dSVaclav Hapla PetscInt c; 731b8e38d09SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 732b8e38d09SVaclav Hapla for (c = 0; c < 2; c++) { 733b8e38d09SVaclav Hapla if (PetscUnlikely(cone[c] != masterCone[c])) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_PLIB, "The algorithm above is wrong as cone[%d] = %d != %d = masterCone[%d]", c, cone[c], masterCone[c], c); 734b8e38d09SVaclav Hapla } 73567aa0e3dSVaclav Hapla } 736b8e38d09SVaclav Hapla #endif 737b8e38d09SVaclav Hapla PetscFunctionReturn(0); 738b8e38d09SVaclav Hapla } 739b8e38d09SVaclav Hapla 7400fe46fbbSVaclav Hapla PetscErrorCode DMPlexOrientCell_Internal(DM dm, PetscInt p, PetscInt start1, PetscBool reverse1) 741b8e38d09SVaclav Hapla { 742fa01033eSVaclav Hapla PetscInt i, j, k, maxConeSize, coneSize, coneConeSize, supportSize, supportConeSize; 743b8e38d09SVaclav Hapla PetscInt start0, start; 744b8e38d09SVaclav Hapla PetscBool reverse0, reverse; 745fa01033eSVaclav Hapla PetscInt newornt; 746a0d42dbcSVaclav Hapla const PetscInt *cone=NULL, *support=NULL, *supportCone=NULL, *ornts=NULL; 747a0d42dbcSVaclav Hapla PetscInt *newcone=NULL, *newornts=NULL; 748fa01033eSVaclav Hapla PetscErrorCode ierr; 749fa01033eSVaclav Hapla 750fa01033eSVaclav Hapla PetscFunctionBegin; 751b8e38d09SVaclav Hapla if (!start1 && !reverse1) PetscFunctionReturn(0); 752fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 753fa01033eSVaclav Hapla if (!coneSize) PetscFunctionReturn(0); /* do nothing for points with no cone */ 754fa01033eSVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 755b8e38d09SVaclav Hapla ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 756fa01033eSVaclav Hapla /* permute p's cone and orientations */ 757fa01033eSVaclav Hapla ierr = DMPlexGetConeOrientation(dm, p, &ornts);CHKERRQ(ierr); 758fa01033eSVaclav Hapla ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr); 759fa01033eSVaclav Hapla ierr = DMGetWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr); 760fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, cone, start1, reverse1, newcone);CHKERRQ(ierr); 761fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Permute_Private(coneSize, ornts, start1, reverse1, newornts);CHKERRQ(ierr); 762fa01033eSVaclav Hapla /* if direction of p (face) is flipped, flip also p's cone points (edges) */ 763fa01033eSVaclav Hapla if (reverse1) { 764fa01033eSVaclav Hapla for (i=0; i<coneSize; i++) { 765fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, cone[i], &coneConeSize);CHKERRQ(ierr); 766fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Translate_Private(newornts[i], &start0, &reverse0);CHKERRQ(ierr); 767fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Combine_Private(coneConeSize, start0, reverse0, 1, PETSC_FALSE, &start, &reverse);CHKERRQ(ierr); 768fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneConeSize, start, reverse, &newornts[i]);CHKERRQ(ierr); 769fa01033eSVaclav Hapla } 770fa01033eSVaclav Hapla } 771fa01033eSVaclav Hapla ierr = DMPlexSetConeOrientation(dm, p, newornts);CHKERRQ(ierr); 772fa01033eSVaclav Hapla /* fix oriention of p within cones of p's support points */ 773fa01033eSVaclav Hapla ierr = DMPlexGetSupport(dm, p, &support);CHKERRQ(ierr); 774fa01033eSVaclav Hapla ierr = DMPlexGetSupportSize(dm, p, &supportSize);CHKERRQ(ierr); 775fa01033eSVaclav Hapla for (j=0; j<supportSize; j++) { 776fa01033eSVaclav Hapla ierr = DMPlexGetCone(dm, support[j], &supportCone);CHKERRQ(ierr); 777fa01033eSVaclav Hapla ierr = DMPlexGetConeSize(dm, support[j], &supportConeSize);CHKERRQ(ierr); 778fa01033eSVaclav Hapla ierr = DMPlexGetConeOrientation(dm, support[j], &ornts);CHKERRQ(ierr); 779fa01033eSVaclav Hapla for (k=0; k<supportConeSize; k++) { 780fa01033eSVaclav Hapla if (supportCone[k] != p) continue; 781fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Translate_Private(ornts[k], &start0, &reverse0);CHKERRQ(ierr); 782fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_Combine_Private(coneSize, start0, reverse0, start1, reverse1, &start, &reverse);CHKERRQ(ierr); 783fa01033eSVaclav Hapla ierr = DMPlexFixFaceOrientations_TranslateBack_Private(coneSize, start, reverse, &newornt);CHKERRQ(ierr); 784fa01033eSVaclav Hapla ierr = DMPlexInsertConeOrientation(dm, support[j], k, newornt);CHKERRQ(ierr); 785fa01033eSVaclav Hapla } 786fa01033eSVaclav Hapla } 787fa01033eSVaclav Hapla /* rewrite cone */ 788fa01033eSVaclav Hapla ierr = DMPlexSetCone(dm, p, newcone);CHKERRQ(ierr); 789fa01033eSVaclav Hapla ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newcone);CHKERRQ(ierr); 790fa01033eSVaclav Hapla ierr = DMRestoreWorkArray(dm, maxConeSize, MPIU_INT, &newornts);CHKERRQ(ierr); 791fa01033eSVaclav Hapla PetscFunctionReturn(0); 792fa01033eSVaclav Hapla } 793fa01033eSVaclav Hapla 794f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[]) 795f80536cbSVaclav Hapla { 796f80536cbSVaclav Hapla PetscInt nleaves; 797f80536cbSVaclav Hapla PetscInt nranks; 798a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 799a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL, *rmine=NULL, *rremote=NULL; 800f80536cbSVaclav Hapla PetscInt n, o, r; 801f80536cbSVaclav Hapla PetscErrorCode ierr; 802f80536cbSVaclav Hapla 803f80536cbSVaclav Hapla PetscFunctionBegin; 804*dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr); 805f80536cbSVaclav Hapla nleaves = roffset[nranks]; 806f80536cbSVaclav Hapla ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr); 807f80536cbSVaclav Hapla for (r=0; r<nranks; r++) { 808f80536cbSVaclav Hapla /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote 809f80536cbSVaclav Hapla - to unify order with the other side */ 810f80536cbSVaclav Hapla o = roffset[r]; 811f80536cbSVaclav Hapla n = roffset[r+1] - o; 812580bdb30SBarry Smith ierr = PetscArraycpy(&(*rmine1)[o], &rmine[o], n);CHKERRQ(ierr); 813580bdb30SBarry Smith ierr = PetscArraycpy(&(*rremote1)[o], &rremote[o], n);CHKERRQ(ierr); 814f80536cbSVaclav Hapla ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr); 815f80536cbSVaclav Hapla } 816f80536cbSVaclav Hapla PetscFunctionReturn(0); 817f80536cbSVaclav Hapla } 818f80536cbSVaclav Hapla 819bba29ab8SVaclav Hapla PetscErrorCode DMPlexOrientInterface(DM dm) 8202e745bdaSMatthew G. Knepley { 821a0d42dbcSVaclav Hapla PetscSF sf=NULL; 822cae7fe92SVaclav Hapla PetscInt (*roots)[2], (*leaves)[2]; 8238a650c75SVaclav Hapla PetscMPIInt (*rootsRanks)[2], (*leavesRanks)[2]; 824a0d42dbcSVaclav Hapla const PetscInt *locals=NULL; 825a0d42dbcSVaclav Hapla const PetscSFNode *remotes=NULL; 8268a650c75SVaclav Hapla PetscInt nroots, nleaves, p, c; 827f80536cbSVaclav Hapla PetscInt nranks, n, o, r; 828a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 829a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL; 830a0d42dbcSVaclav Hapla PetscInt *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */ 831a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 832adeface4SVaclav Hapla PetscInt coneSize, ind0; 8332e745bdaSMatthew G. Knepley MPI_Comm comm; 8342e745bdaSMatthew G. Knepley PetscMPIInt rank; 8352e745bdaSMatthew G. Knepley PetscInt debug = 0; 8362e745bdaSMatthew G. Knepley PetscErrorCode ierr; 8372e745bdaSMatthew G. Knepley 8382e745bdaSMatthew G. Knepley PetscFunctionBegin; 839df6a9fadSVaclav Hapla ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 8402e745bdaSMatthew G. Knepley ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr); 8413ede9f65SMatthew G. Knepley if (nroots < 0) PetscFunctionReturn(0); 842f80536cbSVaclav Hapla ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 843*dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr); 844dc21a0bfSVaclav Hapla #if defined(PETSC_USE_DEBUG) 845dc21a0bfSVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr); 846dc21a0bfSVaclav Hapla ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr); 847dc21a0bfSVaclav Hapla #endif 848f80536cbSVaclav Hapla ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr); 8498a650c75SVaclav Hapla ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr); 8502e745bdaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 8512e745bdaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8522e745bdaSMatthew G. Knepley if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Roots\n");CHKERRQ(ierr);} 8539e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8549e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8559e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 8562e745bdaSMatthew G. Knepley /* Translate all points to root numbering */ 8578a650c75SVaclav Hapla for (c = 0; c < 2; c++) { 8588a650c75SVaclav Hapla if (coneSize > 1) { 8598a650c75SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 8608a650c75SVaclav Hapla if (ind0 < 0) { 8618a650c75SVaclav Hapla roots[p][c] = cone[c]; 8628a650c75SVaclav Hapla rootsRanks[p][c] = rank; 863c8148b97SVaclav Hapla } else { 8648a650c75SVaclav Hapla roots[p][c] = remotes[ind0].index; 8658a650c75SVaclav Hapla rootsRanks[p][c] = remotes[ind0].rank; 8668a650c75SVaclav Hapla } 8678a650c75SVaclav Hapla } else { 8688a650c75SVaclav Hapla roots[p][c] = -1; 8698a650c75SVaclav Hapla rootsRanks[p][c] = -1; 8702e745bdaSMatthew G. Knepley } 8712e745bdaSMatthew G. Knepley } 8728a650c75SVaclav Hapla } 8738a650c75SVaclav Hapla if (debug) { 8748a650c75SVaclav Hapla for (p = 0; p < nroots; ++p) { 8758a650c75SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8768a650c75SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 8778a650c75SVaclav Hapla if (coneSize > 1) { 8788a650c75SVaclav Hapla ierr = PetscSynchronizedPrintf(comm, "[%d] %D: cone=[%D %D] roots=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], roots[p][0], roots[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr); 8798a650c75SVaclav Hapla } 8808a650c75SVaclav Hapla } 8818a650c75SVaclav Hapla ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8828a650c75SVaclav Hapla } 8839e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8848ccb905dSVaclav Hapla for (c = 0; c < 2; c++) { 8858ccb905dSVaclav Hapla leaves[p][c] = -2; 8868ccb905dSVaclav Hapla leavesRanks[p][c] = -2; 8878ccb905dSVaclav Hapla } 888c8148b97SVaclav Hapla } 8892e745bdaSMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8908a650c75SVaclav Hapla ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 8912e745bdaSMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8928a650c75SVaclav Hapla ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 893c8148b97SVaclav Hapla if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 894c8148b97SVaclav Hapla if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referred leaves\n");CHKERRQ(ierr);} 8959e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8969e24d8a0SVaclav Hapla if (leaves[p][0] < 0) continue; 8979e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8989e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 899ea211068SVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: cone=[%D %D] leaves=[%D %D] roots=[%D %D] leavesRanks=[%D %D] rootsRanks=[%D %D]\n", rank, p, cone[0], cone[1], leaves[p][0], leaves[p][1], roots[p][0], roots[p][1], leavesRanks[p][0], leavesRanks[p][1], rootsRanks[p][0], rootsRanks[p][1]);CHKERRQ(ierr);} 900ea211068SVaclav Hapla if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][0] != rootsRanks[p][0])) { 901f80536cbSVaclav Hapla PetscInt masterCone[2]; 902f80536cbSVaclav Hapla /* Translate these two cone points back to leave numbering */ 903f80536cbSVaclav Hapla for (c = 0; c < 2; c++) { 904def636c8SVaclav Hapla if (leavesRanks[p][c] == rank) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - remote rank of point %D is the same rank",leavesRanks[p][c]); 905f80536cbSVaclav Hapla /* Find index of rank leavesRanks[p][c] among remote ranks */ 906f80536cbSVaclav Hapla /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */ 907f80536cbSVaclav Hapla ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr); 908f80536cbSVaclav Hapla if (PetscUnlikely(r < 0)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "this should never happen - rank %D not found among remote ranks",leavesRanks[p][c]); 909f80536cbSVaclav Hapla /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */ 910f80536cbSVaclav Hapla o = roffset[r]; 911f80536cbSVaclav Hapla n = roffset[r+1] - o; 912f80536cbSVaclav Hapla ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr); 913adeface4SVaclav Hapla if (PetscUnlikely(ind0 < 0)) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "No cone point of %D is connected to (%D, %D) - it seems there is missing connection in point SF!",p,ranks[r],leaves[p][c]); 914f80536cbSVaclav Hapla /* Get the corresponding local point */ 915f80536cbSVaclav Hapla masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr); 916f80536cbSVaclav Hapla } 917f80536cbSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %D: masterCone=[%D %D]\n", rank, p, masterCone[0], masterCone[1]);CHKERRQ(ierr);} 918f80536cbSVaclav Hapla /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 919f80536cbSVaclav Hapla ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr); 92023aaf07bSVaclav Hapla } 9212e745bdaSMatthew G. Knepley } 922adeface4SVaclav Hapla #if defined(PETSC_USE_DEBUG) 923adeface4SVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr); 924adeface4SVaclav Hapla for (r = 0; r < nleaves; ++r) { 925adeface4SVaclav Hapla p = locals[r]; 926adeface4SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 927adeface4SVaclav Hapla if (!coneSize) continue; 928adeface4SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 929adeface4SVaclav Hapla for (c = 0; c < 2; c++) { 930adeface4SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 931adeface4SVaclav Hapla if (ind0 < 0) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point SF contains %D but is missing its cone point cone[%D] = %D!", p, c, cone[c]); 932adeface4SVaclav Hapla if (leaves[p][c] != remotes[ind0].index || leavesRanks[p][c] != remotes[ind0].rank) { 933adeface4SVaclav Hapla if (leavesRanks[p][c] == rank) { 934adeface4SVaclav Hapla PetscInt ind1; 935adeface4SVaclav Hapla ierr = PetscFindInt(leaves[p][c], nleaves, locals, &ind1);CHKERRQ(ierr); 936adeface4SVaclav Hapla if (ind1 < 0) { 937adeface4SVaclav Hapla SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). The latter was not even found among the local SF points - it is probably broken!", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]); 938adeface4SVaclav Hapla } else { 939adeface4SVaclav Hapla SETERRQ9(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced %D --> (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leaves[p][c], remotes[ind1].rank, remotes[ind1].index); 940adeface4SVaclav Hapla } 941adeface4SVaclav Hapla } else { 942adeface4SVaclav Hapla SETERRQ8(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D = locals[%d]: cone[%D]=%D --> (%D, %D) differs from the enforced (%D, %D). Is the algorithm above or the point SF broken?", p, r, c, cone[c], remotes[ind0].rank, remotes[ind0].index, leavesRanks[p][c], leaves[p][c]); 943adeface4SVaclav Hapla } 944adeface4SVaclav Hapla } 945adeface4SVaclav Hapla } 946adeface4SVaclav Hapla } 947adeface4SVaclav Hapla #endif 9482e745bdaSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 9498a650c75SVaclav Hapla ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr); 9507c7bb832SVaclav Hapla ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr); 9512e745bdaSMatthew G. Knepley PetscFunctionReturn(0); 9522e745bdaSMatthew G. Knepley } 9532e745bdaSMatthew G. Knepley 9542e72742cSMatthew G. Knepley static PetscErrorCode IntArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], const char valname[], PetscInt n, const PetscInt a[]) 9557bffde78SMichael Lange { 9562e72742cSMatthew G. Knepley PetscInt idx; 9572e72742cSMatthew G. Knepley PetscMPIInt rank; 9582e72742cSMatthew G. Knepley PetscBool flg; 9597bffde78SMichael Lange PetscErrorCode ierr; 9607bffde78SMichael Lange 9617bffde78SMichael Lange PetscFunctionBegin; 9622e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 9632e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 9642e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9652e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 9662e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D %s %D\n", rank, idxname, idx, valname, a[idx]);CHKERRQ(ierr);} 9672e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 9682e72742cSMatthew G. Knepley PetscFunctionReturn(0); 9692e72742cSMatthew G. Knepley } 9702e72742cSMatthew G. Knepley 9712e72742cSMatthew G. Knepley static PetscErrorCode SFNodeArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], PetscInt n, const PetscSFNode a[]) 9722e72742cSMatthew G. Knepley { 9732e72742cSMatthew G. Knepley PetscInt idx; 9742e72742cSMatthew G. Knepley PetscMPIInt rank; 9752e72742cSMatthew G. Knepley PetscBool flg; 9762e72742cSMatthew G. Knepley PetscErrorCode ierr; 9772e72742cSMatthew G. Knepley 9782e72742cSMatthew G. Knepley PetscFunctionBegin; 9792e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 9802e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 9812e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 9822e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 9832e72742cSMatthew G. Knepley if (idxname) { 9842e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D rank %D index %D\n", rank, idxname, idx, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 9852e72742cSMatthew G. Knepley } else { 9862e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]rank %D index %D\n", rank, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 9872e72742cSMatthew G. Knepley } 9882e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 9892e72742cSMatthew G. Knepley PetscFunctionReturn(0); 9902e72742cSMatthew G. Knepley } 9912e72742cSMatthew G. Knepley 9922e72742cSMatthew G. Knepley static PetscErrorCode DMPlexMapToLocalPoint(PetscHMapIJ roothash, const PetscInt localPoints[], PetscMPIInt rank, PetscSFNode remotePoint, PetscInt *localPoint) 9932e72742cSMatthew G. Knepley { 9942e72742cSMatthew G. Knepley PetscErrorCode ierr; 9952e72742cSMatthew G. Knepley 9962e72742cSMatthew G. Knepley PetscFunctionBegin; 9972e72742cSMatthew G. Knepley if (remotePoint.rank == rank) { 9982e72742cSMatthew G. Knepley *localPoint = remotePoint.index; 9992e72742cSMatthew G. Knepley } else { 10002e72742cSMatthew G. Knepley PetscHashIJKey key; 10012e72742cSMatthew G. Knepley PetscInt root; 10022e72742cSMatthew G. Knepley 10032e72742cSMatthew G. Knepley key.i = remotePoint.index; 10042e72742cSMatthew G. Knepley key.j = remotePoint.rank; 10052e72742cSMatthew G. Knepley ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 10062e72742cSMatthew G. Knepley if (root >= 0) { 10072e72742cSMatthew G. Knepley *localPoint = localPoints[root]; 10082e72742cSMatthew G. Knepley } else PetscFunctionReturn(1); 10092e72742cSMatthew G. Knepley } 10102e72742cSMatthew G. Knepley PetscFunctionReturn(0); 10112e72742cSMatthew G. Knepley } 10122e72742cSMatthew G. Knepley 10132e72742cSMatthew G. Knepley /*@ 10142e72742cSMatthew G. Knepley DMPlexInterpolatePointSF - Insert interpolated points in the overlap into the PointSF in parallel, following local interpolation 10152e72742cSMatthew G. Knepley 1016d083f849SBarry Smith Collective on dm 10172e72742cSMatthew G. Knepley 10182e72742cSMatthew G. Knepley Input Parameters: 10192e72742cSMatthew G. Knepley + dm - The interpolated DM 10202e72742cSMatthew G. Knepley - pointSF - The initial SF without interpolated points 10212e72742cSMatthew G. Knepley 10222e72742cSMatthew G. Knepley Output Parameter: 10232e72742cSMatthew G. Knepley . pointSF - The SF including interpolated points 10242e72742cSMatthew G. Knepley 10252e72742cSMatthew G. Knepley Level: intermediate 10262e72742cSMatthew G. Knepley 10272e72742cSMatthew G. Knepley Note: All debugging for this process can be turned on with the options: -dm_interp_pre_view -petscsf_interp_pre_view -petscsection_interp_candidate_view -petscsection_interp_candidate_remote_view -petscsection_interp_claim_view -petscsf_interp_pre_view -dmplex_interp_debug 10282e72742cSMatthew G. Knepley 10292e72742cSMatthew G. Knepley .seealso: DMPlexInterpolate(), DMPlexUninterpolate() 10302e72742cSMatthew G. Knepley @*/ 1031e53487d3SMatthew G. Knepley PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF) 10322e72742cSMatthew G. Knepley { 10332e72742cSMatthew G. Knepley /* 10342e72742cSMatthew G. Knepley Okay, the algorithm is: 10352e72742cSMatthew G. Knepley - Take each point in the overlap (root) 10362e72742cSMatthew G. Knepley - Look at the neighboring points in the overlap (candidates) 10372e72742cSMatthew G. Knepley - Send these candidate points to neighbors 10382e72742cSMatthew G. Knepley - Neighbor checks for edge between root and candidate 10392e72742cSMatthew G. Knepley - If edge is found, it replaces candidate point with edge point 10402e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 10412e72742cSMatthew G. Knepley - Original guy checks for edges, different from original candidate, and gets its own edge 10422e72742cSMatthew G. Knepley - This pair is put into SF 10432e72742cSMatthew G. Knepley 10442e72742cSMatthew G. Knepley We need a new algorithm that tolerates groups larger than 2. 10452e72742cSMatthew G. Knepley - Take each point in the overlap (root) 10462e72742cSMatthew G. Knepley - Find all collections of points in the overlap which make faces (do early join) 10472e72742cSMatthew G. Knepley - Send collections as candidates (add size as first number) 104866aa2a39SMatthew G. Knepley - Make sure to send collection to all owners of all overlap points in collection 10492e72742cSMatthew G. Knepley - Neighbor check for face in collections 10502e72742cSMatthew G. Knepley - If face is found, it replaces candidate point with face point 10512e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 10522e72742cSMatthew G. Knepley - Original guy checks for faces, different from original candidate, and gets its own face 10532e72742cSMatthew G. Knepley - This pair is put into SF 10542e72742cSMatthew G. Knepley */ 10552e72742cSMatthew G. Knepley PetscHMapI leafhash; 10562e72742cSMatthew G. Knepley PetscHMapIJ roothash; 10572e72742cSMatthew G. Knepley const PetscInt *localPoints, *rootdegree; 10582e72742cSMatthew G. Knepley const PetscSFNode *remotePoints; 10592e72742cSMatthew G. Knepley PetscSFNode *candidates, *candidatesRemote, *claims; 10602e72742cSMatthew G. Knepley PetscSection candidateSection, candidateSectionRemote, claimSection; 10612e72742cSMatthew G. Knepley PetscInt numLeaves, l, numRoots, r, candidatesSize, candidatesRemoteSize; 10622e72742cSMatthew G. Knepley PetscMPIInt size, rank; 10632e72742cSMatthew G. Knepley PetscHashIJKey key; 10642e72742cSMatthew G. Knepley PetscBool debug = PETSC_FALSE; 10652e72742cSMatthew G. Knepley PetscErrorCode ierr; 10662e72742cSMatthew G. Knepley 10672e72742cSMatthew G. Knepley PetscFunctionBegin; 10682e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, ((PetscObject) dm)->prefix, "-dmplex_interp_debug", &debug);CHKERRQ(ierr); 10699852e123SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject) dm), &size);CHKERRQ(ierr); 10707bffde78SMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 10717bffde78SMichael Lange ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 10729852e123SBarry Smith if (size < 2 || numRoots < 0) PetscFunctionReturn(0); 10732e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) dm, NULL, "-dm_interp_pre_view");CHKERRQ(ierr); 10742e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) pointSF, NULL, "-petscsf_interp_pre_view");CHKERRQ(ierr); 107525afeb17SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 10767bffde78SMichael Lange /* Build hashes of points in the SF for efficient lookup */ 1077e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr); 1078e8f14785SLisandro Dalcin ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr); 10792e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 10802e72742cSMatthew G. Knepley key.i = remotePoints[l].index; 10812e72742cSMatthew G. Knepley key.j = remotePoints[l].rank; 10822e72742cSMatthew G. Knepley ierr = PetscHMapISet(leafhash, localPoints[l], l);CHKERRQ(ierr); 10832e72742cSMatthew G. Knepley ierr = PetscHMapIJSet(roothash, key, l);CHKERRQ(ierr); 10847bffde78SMichael Lange } 108566aa2a39SMatthew G. Knepley /* Compute root degree to identify shared points */ 10862e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr); 10872e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr); 10882e72742cSMatthew G. Knepley ierr = IntArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-interp_root_degree_view", "Root degree", "point", "degree", numRoots, rootdegree);CHKERRQ(ierr); 108966aa2a39SMatthew G. Knepley /* Build a section / SFNode array of candidate points (face bd points) in the cone(support(leaf)), 109066aa2a39SMatthew G. Knepley where each candidate is defined by a set of remote points (roots) for the other points that define the face. */ 10917bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr); 10927bffde78SMichael Lange ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr); 10937bffde78SMichael Lange { 109466aa2a39SMatthew G. Knepley PetscHMapIJ facehash; 10952e72742cSMatthew G. Knepley 109666aa2a39SMatthew G. Knepley ierr = PetscHMapIJCreate(&facehash);CHKERRQ(ierr); 10972e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 10982e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 10992e72742cSMatthew G. Knepley const PetscInt *support; 11002e72742cSMatthew G. Knepley PetscInt supportSize, s; 11012e72742cSMatthew G. Knepley 11022e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 11032e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 11042e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 11052e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 11062e72742cSMatthew G. Knepley const PetscInt face = support[s]; 11072e72742cSMatthew G. Knepley const PetscInt *cone; 11082e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 11092e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 11102e72742cSMatthew G. Knepley 11112e72742cSMatthew G. Knepley /* Only add face once */ 11122e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 111366aa2a39SMatthew G. Knepley key.i = localPoint; 111466aa2a39SMatthew G. Knepley key.j = face; 111566aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 11162e72742cSMatthew G. Knepley if (f >= 0) continue; 11172e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 11182e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 11192e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 11202e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 11212e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 11222e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 11232e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 11242e72742cSMatthew G. Knepley } 11252e72742cSMatthew G. Knepley if (isFace) { 112666aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found shared face %D\n", rank, face);CHKERRQ(ierr);} 112766aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 11282e72742cSMatthew G. Knepley ierr = PetscSectionAddDof(candidateSection, localPoint, coneSize);CHKERRQ(ierr); 11297bffde78SMichael Lange } 11307bffde78SMichael Lange } 11312e72742cSMatthew G. Knepley } 11322e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 113366aa2a39SMatthew G. Knepley ierr = PetscHMapIJClear(facehash);CHKERRQ(ierr); 11347bffde78SMichael Lange ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr); 11357bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr); 11367bffde78SMichael Lange ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr); 11372e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 11382e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 11392e72742cSMatthew G. Knepley const PetscInt *support; 11402e72742cSMatthew G. Knepley PetscInt supportSize, s, offset, idx = 0; 11412e72742cSMatthew G. Knepley 11422e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 11432e72742cSMatthew G. Knepley ierr = PetscSectionGetOffset(candidateSection, localPoint, &offset);CHKERRQ(ierr); 11442e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 11452e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 11462e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 11472e72742cSMatthew G. Knepley const PetscInt face = support[s]; 11482e72742cSMatthew G. Knepley const PetscInt *cone; 11492e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 11502e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 11512e72742cSMatthew G. Knepley 11522e72742cSMatthew G. Knepley /* Only add face once */ 11532e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 115466aa2a39SMatthew G. Knepley key.i = localPoint; 115566aa2a39SMatthew G. Knepley key.j = face; 115666aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 11572e72742cSMatthew G. Knepley if (f >= 0) continue; 11582e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 11592e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 11602e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 11612e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 11622e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 11632e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 11642e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 11652e72742cSMatthew G. Knepley } 11662e72742cSMatthew G. Knepley if (isFace) { 116766aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding shared face %D at idx %D\n", rank, face, idx);CHKERRQ(ierr);} 116866aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 11692e72742cSMatthew G. Knepley candidates[offset+idx].rank = -1; 11702e72742cSMatthew G. Knepley candidates[offset+idx++].index = coneSize-1; 11712e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 11722e72742cSMatthew G. Knepley if (cone[c] == localPoint) continue; 11732e72742cSMatthew G. Knepley if (rootdegree[cone[c]]) { 11742e72742cSMatthew G. Knepley candidates[offset+idx].rank = rank; 11752e72742cSMatthew G. Knepley candidates[offset+idx++].index = cone[c]; 11762e72742cSMatthew G. Knepley } else { 11772e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 11782e72742cSMatthew G. Knepley if (root < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot locate local point %D in SF", cone[c]); 11792e72742cSMatthew G. Knepley candidates[offset+idx++] = remotePoints[root]; 11807bffde78SMichael Lange } 11817bffde78SMichael Lange } 11822e72742cSMatthew G. Knepley } 11832e72742cSMatthew G. Knepley } 11842e72742cSMatthew G. Knepley } 11852e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 118666aa2a39SMatthew G. Knepley ierr = PetscHMapIJDestroy(&facehash);CHKERRQ(ierr); 11872e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSection, NULL, "-petscsection_interp_candidate_view");CHKERRQ(ierr); 11882e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_view", "Candidates", NULL, candidatesSize, candidates);CHKERRQ(ierr); 11897bffde78SMichael Lange } 11907bffde78SMichael Lange /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */ 11912e72742cSMatthew G. Knepley /* Note that this section is indexed by offsets into leaves, not by point number */ 11927bffde78SMichael Lange { 11937bffde78SMichael Lange PetscSF sfMulti, sfInverse, sfCandidates; 11947bffde78SMichael Lange PetscInt *remoteOffsets; 11952e72742cSMatthew G. Knepley 11967bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 11977bffde78SMichael Lange ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr); 11987bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr); 11997bffde78SMichael Lange ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr); 12007bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr); 12017bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr); 12027bffde78SMichael Lange ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr); 12037bffde78SMichael Lange ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 12047bffde78SMichael Lange ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 12057bffde78SMichael Lange ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr); 12067bffde78SMichael Lange ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr); 12077bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 12082e72742cSMatthew G. Knepley 12092e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSectionRemote, NULL, "-petscsection_interp_candidate_remote_view");CHKERRQ(ierr); 12102e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_remote_view", "Remote Candidates", NULL, candidatesRemoteSize, candidatesRemote);CHKERRQ(ierr); 12117bffde78SMichael Lange } 12122e72742cSMatthew G. Knepley /* */ 12137bffde78SMichael Lange { 12142e72742cSMatthew G. Knepley PetscInt idx; 12152e72742cSMatthew G. Knepley /* There is a section point for every leaf attached to a given root point */ 12162e72742cSMatthew G. Knepley for (r = 0, idx = 0; r < numRoots; ++r) { 12172e72742cSMatthew G. Knepley PetscInt deg; 12182e72742cSMatthew G. Knepley for (deg = 0; deg < rootdegree[r]; ++deg, ++idx) { 12192e72742cSMatthew G. Knepley PetscInt offset, dof, d; 12202e72742cSMatthew G. Knepley 12217bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr); 12227bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr); 12232e72742cSMatthew G. Knepley for (d = 0; d < dof; ++d) { 12242e72742cSMatthew G. Knepley const PetscInt sizeInd = offset+d; 12252e72742cSMatthew G. Knepley const PetscInt numPoints = candidatesRemote[sizeInd].index; 12262e72742cSMatthew G. Knepley const PetscInt *join = NULL; 12272e72742cSMatthew G. Knepley PetscInt points[1024], p, joinSize; 12282e72742cSMatthew G. Knepley 12292e72742cSMatthew G. Knepley points[0] = r; 12302e72742cSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 12312e72742cSMatthew G. Knepley ierr = DMPlexMapToLocalPoint(roothash, localPoints, rank, candidatesRemote[offset+(++d)], &points[p+1]); 12322e72742cSMatthew G. Knepley if (ierr) {d += numPoints-1 - p; break;} /* We got a point not in our overlap */ 12332e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local candidate %D\n", rank, points[p+1]);CHKERRQ(ierr);} 12347bffde78SMichael Lange } 12352e72742cSMatthew G. Knepley if (ierr) continue; 12362e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 12377bffde78SMichael Lange if (joinSize == 1) { 12382e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding face %D at idx %D\n", rank, join[0], sizeInd);CHKERRQ(ierr);} 12392e72742cSMatthew G. Knepley candidatesRemote[sizeInd].rank = rank; 12402e72742cSMatthew G. Knepley candidatesRemote[sizeInd].index = join[0]; 12417bffde78SMichael Lange } 12422e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 12437bffde78SMichael Lange } 12447bffde78SMichael Lange } 12457bffde78SMichael Lange } 12462e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 12477bffde78SMichael Lange } 12487bffde78SMichael Lange /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */ 12497bffde78SMichael Lange { 12507bffde78SMichael Lange PetscSF sfMulti, sfClaims, sfPointNew; 12517bffde78SMichael Lange PetscSFNode *remotePointsNew; 12522e72742cSMatthew G. Knepley PetscHMapI claimshash; 12532e72742cSMatthew G. Knepley PetscInt *remoteOffsets, *localPointsNew; 12542e72742cSMatthew G. Knepley PetscInt claimsSize, pStart, pEnd, root, numLocalNew, p, d; 12552e72742cSMatthew G. Knepley 12567bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 12577bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr); 12587bffde78SMichael Lange ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr); 12597bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr); 12602e72742cSMatthew G. Knepley ierr = PetscSectionGetStorageSize(claimSection, &claimsSize);CHKERRQ(ierr); 12612e72742cSMatthew G. Knepley ierr = PetscMalloc1(claimsSize, &claims);CHKERRQ(ierr); 12627bffde78SMichael Lange ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 12637bffde78SMichael Lange ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 12647bffde78SMichael Lange ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr); 12657bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 12662e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) claimSection, NULL, "-petscsection_interp_claim_view");CHKERRQ(ierr); 12672e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_claim_view", "Claims", NULL, claimsSize, claims);CHKERRQ(ierr); 12687bffde78SMichael Lange /* Walk the original section of local supports and add an SF entry for each updated item */ 1269e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr); 12707bffde78SMichael Lange for (p = 0; p < numRoots; ++p) { 12712e72742cSMatthew G. Knepley PetscInt dof, offset; 12722e72742cSMatthew G. Knepley 12732e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking root for claims %D\n", rank, p);CHKERRQ(ierr);} 12747bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr); 12757bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr); 12762e72742cSMatthew G. Knepley for (d = 0; d < dof;) { 12772e72742cSMatthew G. Knepley if (claims[offset+d].rank >= 0) { 12782e72742cSMatthew G. Knepley const PetscInt faceInd = offset+d; 12792e72742cSMatthew G. Knepley const PetscInt numPoints = candidates[faceInd].index; 12802e72742cSMatthew G. Knepley const PetscInt *join = NULL; 12812e72742cSMatthew G. Knepley PetscInt joinSize, points[1024], c; 12822e72742cSMatthew G. Knepley 12832e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found claim for remote point (%D, %D)\n", rank, claims[faceInd].rank, claims[faceInd].index);CHKERRQ(ierr);} 12842e72742cSMatthew G. Knepley points[0] = p; 12852e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[0]);CHKERRQ(ierr);} 12862e72742cSMatthew G. Knepley for (c = 0, ++d; c < numPoints; ++c, ++d) { 1287e8f14785SLisandro Dalcin key.i = candidates[offset+d].index; 1288e8f14785SLisandro Dalcin key.j = candidates[offset+d].rank; 1289e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 12902e72742cSMatthew G. Knepley points[c+1] = localPoints[root]; 12912e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[c+1]);CHKERRQ(ierr);} 12922e72742cSMatthew G. Knepley } 12932e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 12942e72742cSMatthew G. Knepley if (joinSize == 1) { 12952e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found local face %D\n", rank, join[0]);CHKERRQ(ierr);} 12962e72742cSMatthew G. Knepley ierr = PetscHMapISet(claimshash, join[0], faceInd);CHKERRQ(ierr); 12972e72742cSMatthew G. Knepley } 12982e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 12992e72742cSMatthew G. Knepley } else d += claims[offset+d].index+1; 13007bffde78SMichael Lange } 13017bffde78SMichael Lange } 13022e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 13037bffde78SMichael Lange /* Create new pointSF from hashed claims */ 1304e8f14785SLisandro Dalcin ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr); 13057bffde78SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 13067bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr); 13077bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr); 13087bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 13097bffde78SMichael Lange localPointsNew[p] = localPoints[p]; 13107bffde78SMichael Lange remotePointsNew[p].index = remotePoints[p].index; 13117bffde78SMichael Lange remotePointsNew[p].rank = remotePoints[p].rank; 13127bffde78SMichael Lange } 1313f3190fc2SToby Isaac p = numLeaves; 1314e8f14785SLisandro Dalcin ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr); 1315f3190fc2SToby Isaac ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr); 13167bffde78SMichael Lange for (p = numLeaves; p < numLeaves + numLocalNew; ++p) { 13172e72742cSMatthew G. Knepley PetscInt offset; 1318e8f14785SLisandro Dalcin ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr); 13197bffde78SMichael Lange remotePointsNew[p] = claims[offset]; 13207bffde78SMichael Lange } 13217bffde78SMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr); 13227bffde78SMichael Lange ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 13237bffde78SMichael Lange ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr); 13247bffde78SMichael Lange ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr); 1325e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr); 13267bffde78SMichael Lange } 1327e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr); 1328e8f14785SLisandro Dalcin ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr); 13297bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr); 13307bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr); 13317bffde78SMichael Lange ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr); 13327bffde78SMichael Lange ierr = PetscFree(candidates);CHKERRQ(ierr); 13337bffde78SMichael Lange ierr = PetscFree(candidatesRemote);CHKERRQ(ierr); 13347bffde78SMichael Lange ierr = PetscFree(claims);CHKERRQ(ierr); 133525afeb17SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 13367bffde78SMichael Lange PetscFunctionReturn(0); 13377bffde78SMichael Lange } 13387bffde78SMichael Lange 13390c795ddcSMatthew G. Knepley /*@C 134080330477SMatthew G. Knepley DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc. 134180330477SMatthew G. Knepley 1342d083f849SBarry Smith Collective on dm 134380330477SMatthew G. Knepley 1344e56d480eSMatthew G. Knepley Input Parameters: 1345e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices 134610a67516SMatthew G. Knepley - dmInt - The interpolated DM 134780330477SMatthew G. Knepley 134880330477SMatthew G. Knepley Output Parameter: 13494e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object 135080330477SMatthew G. Knepley 135180330477SMatthew G. Knepley Level: intermediate 135280330477SMatthew G. Knepley 135395452b02SPatrick Sanan Notes: 135495452b02SPatrick Sanan It does not copy over the coordinates. 135543eeeb2dSStefano Zampini 135643eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 135780330477SMatthew G. Knepley @*/ 13589f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt) 13599f074e33SMatthew G Knepley { 13609a5b13a2SMatthew G Knepley DM idm, odm = dm; 13617bffde78SMichael Lange PetscSF sfPoint; 13622e1b13c2SMatthew G. Knepley PetscInt depth, dim, d; 136310a67516SMatthew G. Knepley const char *name; 1364b325530aSVaclav Hapla PetscBool flg=PETSC_TRUE; 13659f074e33SMatthew G Knepley PetscErrorCode ierr; 13669f074e33SMatthew G Knepley 13679f074e33SMatthew G Knepley PetscFunctionBegin; 136810a67516SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 136910a67516SMatthew G. Knepley PetscValidPointer(dmInt, 2); 1370a72f3261SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 13712e1b13c2SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1372c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1373b21b8912SMatthew G. Knepley if ((depth == dim) || (dim <= 1)) { 137476b791aaSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 137576b791aaSMatthew G. Knepley idm = dm; 1376b21b8912SMatthew G. Knepley } else { 13779a5b13a2SMatthew G Knepley for (d = 1; d < dim; ++d) { 13789a5b13a2SMatthew G Knepley /* Create interpolated mesh */ 137910a67516SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr); 13809a5b13a2SMatthew G Knepley ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr); 1381c73cfb54SMatthew G. Knepley ierr = DMSetDimension(idm, dim);CHKERRQ(ierr); 13827bffde78SMichael Lange if (depth > 0) { 13837bffde78SMichael Lange ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr); 13847bffde78SMichael Lange ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr); 13852e72742cSMatthew G. Knepley ierr = DMPlexInterpolatePointSF(idm, sfPoint);CHKERRQ(ierr); 13867bffde78SMichael Lange } 13879a5b13a2SMatthew G Knepley if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);} 13889a5b13a2SMatthew G Knepley odm = idm; 13899f074e33SMatthew G Knepley } 139010a67516SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) dm, &name);CHKERRQ(ierr); 139110a67516SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) idm, name);CHKERRQ(ierr); 139210a67516SMatthew G. Knepley ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr); 139310a67516SMatthew G. Knepley ierr = DMCopyLabels(dm, idm);CHKERRQ(ierr); 1394b325530aSVaclav Hapla ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr); 1395b325530aSVaclav Hapla if (flg) {ierr = DMPlexOrientInterface(idm);CHKERRQ(ierr);} 139684699f70SSatish Balay } 139743eeeb2dSStefano Zampini { 139843eeeb2dSStefano Zampini PetscBool isper; 139943eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 140043eeeb2dSStefano Zampini const DMBoundaryType *bd; 140143eeeb2dSStefano Zampini 140243eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 140343eeeb2dSStefano Zampini ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr); 140443eeeb2dSStefano Zampini } 14059a5b13a2SMatthew G Knepley *dmInt = idm; 1406a72f3261SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 14079f074e33SMatthew G Knepley PetscFunctionReturn(0); 14089f074e33SMatthew G Knepley } 140907b0a1fcSMatthew G Knepley 141080330477SMatthew G. Knepley /*@ 141180330477SMatthew G. Knepley DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices 141280330477SMatthew G. Knepley 1413d083f849SBarry Smith Collective on dmA 141480330477SMatthew G. Knepley 141580330477SMatthew G. Knepley Input Parameter: 141680330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates 141780330477SMatthew G. Knepley 141880330477SMatthew G. Knepley Output Parameter: 141980330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates 142080330477SMatthew G. Knepley 142180330477SMatthew G. Knepley Level: intermediate 142280330477SMatthew G. Knepley 142380330477SMatthew G. Knepley Note: This is typically used when adding pieces other than vertices to a mesh 142480330477SMatthew G. Knepley 142565f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection() 142680330477SMatthew G. Knepley @*/ 142707b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB) 142807b0a1fcSMatthew G Knepley { 142907b0a1fcSMatthew G Knepley Vec coordinatesA, coordinatesB; 143043eeeb2dSStefano Zampini VecType vtype; 143107b0a1fcSMatthew G Knepley PetscSection coordSectionA, coordSectionB; 143207b0a1fcSMatthew G Knepley PetscScalar *coordsA, *coordsB; 14330bedd6beSMatthew G. Knepley PetscInt spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d; 143443eeeb2dSStefano Zampini PetscInt cStartA, cEndA, cStartB, cEndB, cS, cE; 143543eeeb2dSStefano Zampini PetscBool lc = PETSC_FALSE; 143607b0a1fcSMatthew G Knepley PetscErrorCode ierr; 143707b0a1fcSMatthew G Knepley 143807b0a1fcSMatthew G Knepley PetscFunctionBegin; 143943eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 144043eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 144176b791aaSMatthew G. Knepley if (dmA == dmB) PetscFunctionReturn(0); 144207b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr); 144307b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr); 144407b0a1fcSMatthew G Knepley if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB); 144543eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr); 144643eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr); 144769d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr); 144869d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr); 1449972bc18aSToby Isaac if (coordSectionA == coordSectionB) PetscFunctionReturn(0); 14500bedd6beSMatthew G. Knepley ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr); 14510bedd6beSMatthew G. Knepley if (!Nf) PetscFunctionReturn(0); 14520bedd6beSMatthew G. Knepley if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf); 1453df26b574SMatthew G. Knepley if (!coordSectionB) { 1454df26b574SMatthew G. Knepley PetscInt dim; 1455df26b574SMatthew G. Knepley 1456df26b574SMatthew G. Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr); 1457df26b574SMatthew G. Knepley ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr); 1458df26b574SMatthew G. Knepley ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr); 1459df26b574SMatthew G. Knepley ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr); 1460df26b574SMatthew G. Knepley } 146107b0a1fcSMatthew G Knepley ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr); 146207b0a1fcSMatthew G Knepley ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr); 146307b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr); 146443eeeb2dSStefano Zampini ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr); 146543eeeb2dSStefano Zampini if (cStartA <= cS && cS < cEndA) { /* localized coordinates */ 1466367003a6SStefano Zampini if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB); 146743eeeb2dSStefano Zampini cS = cS - cStartA + cStartB; 146843eeeb2dSStefano Zampini cE = vEndB; 146943eeeb2dSStefano Zampini lc = PETSC_TRUE; 147043eeeb2dSStefano Zampini } else { 147143eeeb2dSStefano Zampini cS = vStartB; 147243eeeb2dSStefano Zampini cE = vEndB; 147343eeeb2dSStefano Zampini } 147443eeeb2dSStefano Zampini ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr); 147507b0a1fcSMatthew G Knepley for (v = vStartB; v < vEndB; ++v) { 147607b0a1fcSMatthew G Knepley ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr); 147707b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr); 147807b0a1fcSMatthew G Knepley } 147943eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 148043eeeb2dSStefano Zampini PetscInt c; 148143eeeb2dSStefano Zampini 148243eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 148343eeeb2dSStefano Zampini PetscInt dof; 148443eeeb2dSStefano Zampini 148543eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 148643eeeb2dSStefano Zampini ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr); 148743eeeb2dSStefano Zampini ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr); 148843eeeb2dSStefano Zampini } 148943eeeb2dSStefano Zampini } 149007b0a1fcSMatthew G Knepley ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr); 149107b0a1fcSMatthew G Knepley ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr); 149207b0a1fcSMatthew G Knepley ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr); 14938b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr); 149407b0a1fcSMatthew G Knepley ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr); 149507b0a1fcSMatthew G Knepley ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr); 149643eeeb2dSStefano Zampini ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr); 149743eeeb2dSStefano Zampini ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr); 149843eeeb2dSStefano Zampini ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr); 149943eeeb2dSStefano Zampini ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr); 150007b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr); 150107b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr); 150207b0a1fcSMatthew G Knepley for (v = 0; v < vEndB-vStartB; ++v) { 150343eeeb2dSStefano Zampini PetscInt offA, offB; 150443eeeb2dSStefano Zampini 150543eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr); 150643eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr); 150707b0a1fcSMatthew G Knepley for (d = 0; d < spaceDim; ++d) { 150843eeeb2dSStefano Zampini coordsB[offB+d] = coordsA[offA+d]; 150943eeeb2dSStefano Zampini } 151043eeeb2dSStefano Zampini } 151143eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 151243eeeb2dSStefano Zampini PetscInt c; 151343eeeb2dSStefano Zampini 151443eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 151543eeeb2dSStefano Zampini PetscInt dof, offA, offB; 151643eeeb2dSStefano Zampini 151743eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr); 151843eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr); 151943eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 1520580bdb30SBarry Smith ierr = PetscArraycpy(coordsB + offB,coordsA + offA,dof);CHKERRQ(ierr); 152107b0a1fcSMatthew G Knepley } 152207b0a1fcSMatthew G Knepley } 152307b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr); 152407b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr); 152507b0a1fcSMatthew G Knepley ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr); 152607b0a1fcSMatthew G Knepley ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr); 152707b0a1fcSMatthew G Knepley PetscFunctionReturn(0); 152807b0a1fcSMatthew G Knepley } 15295c386225SMatthew G. Knepley 15304e3744c5SMatthew G. Knepley /*@ 15314e3744c5SMatthew G. Knepley DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh 15324e3744c5SMatthew G. Knepley 1533d083f849SBarry Smith Collective on dm 15344e3744c5SMatthew G. Knepley 15354e3744c5SMatthew G. Knepley Input Parameter: 15364e3744c5SMatthew G. Knepley . dm - The complete DMPlex object 15374e3744c5SMatthew G. Knepley 15384e3744c5SMatthew G. Knepley Output Parameter: 15394e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices 15404e3744c5SMatthew G. Knepley 15414e3744c5SMatthew G. Knepley Level: intermediate 15424e3744c5SMatthew G. Knepley 154395452b02SPatrick Sanan Notes: 154495452b02SPatrick Sanan It does not copy over the coordinates. 154543eeeb2dSStefano Zampini 154643eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 15474e3744c5SMatthew G. Knepley @*/ 15484e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint) 15494e3744c5SMatthew G. Knepley { 15504e3744c5SMatthew G. Knepley DM udm; 1551c9f63434SStefano Zampini PetscInt dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone; 15524e3744c5SMatthew G. Knepley PetscErrorCode ierr; 15534e3744c5SMatthew G. Knepley 15544e3744c5SMatthew G. Knepley PetscFunctionBegin; 155543eeeb2dSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 155643eeeb2dSStefano Zampini PetscValidPointer(dmUnint, 2); 1557c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 15584e3744c5SMatthew G. Knepley if (dim <= 1) { 15594e3744c5SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 1560595d4abbSMatthew G. Knepley *dmUnint = dm; 1561595d4abbSMatthew G. Knepley PetscFunctionReturn(0); 15624e3744c5SMatthew G. Knepley } 1563595d4abbSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1564595d4abbSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1565c9f63434SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 15664e3744c5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr); 15674e3744c5SMatthew G. Knepley ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr); 1568c73cfb54SMatthew G. Knepley ierr = DMSetDimension(udm, dim);CHKERRQ(ierr); 15694e3744c5SMatthew G. Knepley ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr); 15704e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1571595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 15724e3744c5SMatthew G. Knepley 15734e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15744e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 15754e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 15764e3744c5SMatthew G. Knepley 15774e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++coneSize; 15784e3744c5SMatthew G. Knepley } 15794e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15804e3744c5SMatthew G. Knepley ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr); 1581595d4abbSMatthew G. Knepley maxConeSize = PetscMax(maxConeSize, coneSize); 15824e3744c5SMatthew G. Knepley } 15834e3744c5SMatthew G. Knepley ierr = DMSetUp(udm);CHKERRQ(ierr); 1584785e854fSJed Brown ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr); 15854e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1586595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 15874e3744c5SMatthew G. Knepley 15884e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15894e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 15904e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 15914e3744c5SMatthew G. Knepley 15924e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p; 15934e3744c5SMatthew G. Knepley } 15944e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15954e3744c5SMatthew G. Knepley ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr); 15964e3744c5SMatthew G. Knepley } 15974e3744c5SMatthew G. Knepley ierr = PetscFree(cone);CHKERRQ(ierr); 1598c9f63434SStefano Zampini ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 15994e3744c5SMatthew G. Knepley ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr); 16004e3744c5SMatthew G. Knepley ierr = DMPlexStratify(udm);CHKERRQ(ierr); 16015c7de58aSMatthew G. Knepley /* Reduce SF */ 16025c7de58aSMatthew G. Knepley { 16035c7de58aSMatthew G. Knepley PetscSF sfPoint, sfPointUn; 16045c7de58aSMatthew G. Knepley const PetscSFNode *remotePoints; 16055c7de58aSMatthew G. Knepley const PetscInt *localPoints; 16065c7de58aSMatthew G. Knepley PetscSFNode *remotePointsUn; 16075c7de58aSMatthew G. Knepley PetscInt *localPointsUn; 16085c7de58aSMatthew G. Knepley PetscInt vEnd, numRoots, numLeaves, l; 16095c7de58aSMatthew G. Knepley PetscInt numLeavesUn = 0, n = 0; 16105c7de58aSMatthew G. Knepley PetscErrorCode ierr; 16115c7de58aSMatthew G. Knepley 16125c7de58aSMatthew G. Knepley /* Get original SF information */ 16135c7de58aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 16145c7de58aSMatthew G. Knepley ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr); 16155c7de58aSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr); 16165c7de58aSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 16175c7de58aSMatthew G. Knepley /* Allocate space for cells and vertices */ 16185c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++; 16195c7de58aSMatthew G. Knepley /* Fill in leaves */ 16205c7de58aSMatthew G. Knepley if (vEnd >= 0) { 16215c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr); 16225c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr); 16235c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; l++) { 16245c7de58aSMatthew G. Knepley if (localPoints[l] < vEnd) { 16255c7de58aSMatthew G. Knepley localPointsUn[n] = localPoints[l]; 16265c7de58aSMatthew G. Knepley remotePointsUn[n].rank = remotePoints[l].rank; 16275c7de58aSMatthew G. Knepley remotePointsUn[n].index = remotePoints[l].index; 16285c7de58aSMatthew G. Knepley ++n; 16295c7de58aSMatthew G. Knepley } 16305c7de58aSMatthew G. Knepley } 16315c7de58aSMatthew G. Knepley if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn); 16325c7de58aSMatthew G. Knepley ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr); 16335c7de58aSMatthew G. Knepley } 16345c7de58aSMatthew G. Knepley } 163543eeeb2dSStefano Zampini { 163643eeeb2dSStefano Zampini PetscBool isper; 163743eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 163843eeeb2dSStefano Zampini const DMBoundaryType *bd; 163943eeeb2dSStefano Zampini 164043eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 164143eeeb2dSStefano Zampini ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr); 164243eeeb2dSStefano Zampini } 164343eeeb2dSStefano Zampini 16444e3744c5SMatthew G. Knepley *dmUnint = udm; 16454e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 16464e3744c5SMatthew G. Knepley } 1647