1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapij.h> 4e8f14785SLisandro Dalcin 5a7748839SVaclav Hapla const char * const DMPlexInterpolatedFlags[] = {"none", "partial", "mixed", "full", "DMPlexInterpolatedFlag", "DMPLEX_INTERPOLATED_", 0}; 6a7748839SVaclav Hapla 7e8f14785SLisandro Dalcin /* HashIJKL */ 8e8f14785SLisandro Dalcin 9e8f14785SLisandro Dalcin #include <petsc/private/hashmap.h> 10e8f14785SLisandro Dalcin 11e8f14785SLisandro Dalcin typedef struct _PetscHashIJKLKey { PetscInt i, j, k, l; } PetscHashIJKLKey; 12e8f14785SLisandro Dalcin 13e8f14785SLisandro Dalcin #define PetscHashIJKLKeyHash(key) \ 14e8f14785SLisandro Dalcin PetscHashCombine(PetscHashCombine(PetscHashInt((key).i),PetscHashInt((key).j)), \ 15e8f14785SLisandro Dalcin PetscHashCombine(PetscHashInt((key).k),PetscHashInt((key).l))) 16e8f14785SLisandro Dalcin 17e8f14785SLisandro Dalcin #define PetscHashIJKLKeyEqual(k1,k2) \ 18e8f14785SLisandro Dalcin (((k1).i==(k2).i) ? ((k1).j==(k2).j) ? ((k1).k==(k2).k) ? ((k1).l==(k2).l) : 0 : 0 : 0) 19e8f14785SLisandro Dalcin 20e8f14785SLisandro Dalcin PETSC_HASH_MAP(HashIJKL, PetscHashIJKLKey, PetscInt, PetscHashIJKLKeyHash, PetscHashIJKLKeyEqual, -1) 21e8f14785SLisandro Dalcin 229f074e33SMatthew G Knepley 239f074e33SMatthew G Knepley /* 249a5b13a2SMatthew G Knepley DMPlexGetFaces_Internal - Gets groups of vertices that correspond to faces for the given cell 25cd921712SStefano Zampini This assumes that the mesh is not interpolated from the depth of point p to the vertices 269f074e33SMatthew G Knepley */ 27439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 289f074e33SMatthew G Knepley { 299f074e33SMatthew G Knepley const PetscInt *cone = NULL; 30cd921712SStefano Zampini PetscInt coneSize; 319f074e33SMatthew G Knepley PetscErrorCode ierr; 329f074e33SMatthew G Knepley 339f074e33SMatthew G Knepley PetscFunctionBegin; 349f074e33SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 359f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 369f074e33SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 37439ece16SMatthew G. Knepley ierr = DMPlexGetRawFaces_Internal(dm, dim, coneSize, cone, numFaces, faceSize, faces);CHKERRQ(ierr); 38439ece16SMatthew G. Knepley PetscFunctionReturn(0); 39439ece16SMatthew G. Knepley } 40439ece16SMatthew G. Knepley 41439ece16SMatthew G. Knepley /* 42439ece16SMatthew G. Knepley DMPlexRestoreFaces_Internal - Restores the array 43439ece16SMatthew G. Knepley */ 44439ece16SMatthew G. Knepley PetscErrorCode DMPlexRestoreFaces_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 45439ece16SMatthew G. Knepley { 46439ece16SMatthew G. Knepley PetscErrorCode ierr; 47439ece16SMatthew G. Knepley 48439ece16SMatthew G. Knepley PetscFunctionBegin; 49cd921712SStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 50439ece16SMatthew G. Knepley PetscFunctionReturn(0); 51439ece16SMatthew G. Knepley } 52439ece16SMatthew G. Knepley 53439ece16SMatthew G. Knepley /* 54439ece16SMatthew G. Knepley DMPlexGetRawFaces_Internal - Gets groups of vertices that correspond to faces for the given cone 55439ece16SMatthew G. Knepley */ 56439ece16SMatthew G. Knepley PetscErrorCode DMPlexGetRawFaces_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *faceSize, const PetscInt *faces[]) 57439ece16SMatthew G. Knepley { 58439ece16SMatthew G. Knepley PetscInt *facesTmp; 59439ece16SMatthew G. Knepley PetscInt maxConeSize, maxSupportSize; 60439ece16SMatthew G. Knepley PetscErrorCode ierr; 61439ece16SMatthew G. Knepley 62439ece16SMatthew G. Knepley PetscFunctionBegin; 63439ece16SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64cd921712SStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 65439ece16SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 6669291d52SBarry Smith if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 679f074e33SMatthew G Knepley switch (dim) { 68c49d9212SMatthew G. Knepley case 1: 69c49d9212SMatthew G. Knepley switch (coneSize) { 70c49d9212SMatthew G. Knepley case 2: 71c49d9212SMatthew G. Knepley if (faces) { 72c49d9212SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 73c49d9212SMatthew G. Knepley *faces = facesTmp; 74c49d9212SMatthew G. Knepley } 75c49d9212SMatthew G. Knepley if (numFaces) *numFaces = 2; 76c49d9212SMatthew G. Knepley if (faceSize) *faceSize = 1; 77c49d9212SMatthew G. Knepley break; 78c49d9212SMatthew G. Knepley default: 7999836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 80c49d9212SMatthew G. Knepley } 81c49d9212SMatthew G. Knepley break; 829f074e33SMatthew G Knepley case 2: 839f074e33SMatthew G Knepley switch (coneSize) { 849f074e33SMatthew G Knepley case 3: 859a5b13a2SMatthew G Knepley if (faces) { 869a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 879a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 889a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 899a5b13a2SMatthew G Knepley *faces = facesTmp; 909a5b13a2SMatthew G Knepley } 919a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 929a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 939f074e33SMatthew G Knepley break; 949f074e33SMatthew G Knepley case 4: 959a5b13a2SMatthew G Knepley /* Vertices follow right hand rule */ 969a5b13a2SMatthew G Knepley if (faces) { 979a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 989a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 999a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[3]; 1009a5b13a2SMatthew G Knepley facesTmp[6] = cone[3]; facesTmp[7] = cone[0]; 1019a5b13a2SMatthew G Knepley *faces = facesTmp; 1029a5b13a2SMatthew G Knepley } 1039a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1049a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1059f074e33SMatthew G Knepley break; 1069f074e33SMatthew G Knepley default: 10799836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1089f074e33SMatthew G Knepley } 1099f074e33SMatthew G Knepley break; 1109f074e33SMatthew G Knepley case 3: 1119f074e33SMatthew G Knepley switch (coneSize) { 1129f074e33SMatthew G Knepley case 3: 1139a5b13a2SMatthew G Knepley if (faces) { 1149a5b13a2SMatthew G Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 1159a5b13a2SMatthew G Knepley facesTmp[2] = cone[1]; facesTmp[3] = cone[2]; 1169a5b13a2SMatthew G Knepley facesTmp[4] = cone[2]; facesTmp[5] = cone[0]; 1179a5b13a2SMatthew G Knepley *faces = facesTmp; 1189a5b13a2SMatthew G Knepley } 1199a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 3; 1209a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 2; 1219f074e33SMatthew G Knepley break; 1229f074e33SMatthew G Knepley case 4: 1232e1b13c2SMatthew G. Knepley /* Vertices of first face follow right hand rule and normal points away from last vertex */ 1249a5b13a2SMatthew G Knepley if (faces) { 1252e1b13c2SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; 1262e1b13c2SMatthew G. Knepley facesTmp[3] = cone[0]; facesTmp[4] = cone[3]; facesTmp[5] = cone[1]; 1272e1b13c2SMatthew G. Knepley facesTmp[6] = cone[0]; facesTmp[7] = cone[2]; facesTmp[8] = cone[3]; 1282e1b13c2SMatthew G. Knepley facesTmp[9] = cone[2]; facesTmp[10] = cone[1]; facesTmp[11] = cone[3]; 1299a5b13a2SMatthew G Knepley *faces = facesTmp; 1309a5b13a2SMatthew G Knepley } 1319a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 4; 1329a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 3; 1339a5b13a2SMatthew G Knepley break; 1349a5b13a2SMatthew G Knepley case 8: 135e368ef20SMatthew G. Knepley /* 7--------6 136e368ef20SMatthew G. Knepley /| /| 137e368ef20SMatthew G. Knepley / | / | 138e368ef20SMatthew G. Knepley 4--------5 | 139e368ef20SMatthew G. Knepley | | | | 140e368ef20SMatthew G. Knepley | | | | 141e368ef20SMatthew G. Knepley | 1--------2 142e368ef20SMatthew G. Knepley | / | / 143e368ef20SMatthew G. Knepley |/ |/ 144e368ef20SMatthew G. Knepley 0--------3 145e368ef20SMatthew G. Knepley */ 1469a5b13a2SMatthew G Knepley if (faces) { 14751cfd6a4SMatthew G. Knepley facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; /* Bottom */ 14851cfd6a4SMatthew G. Knepley facesTmp[4] = cone[4]; facesTmp[5] = cone[5]; facesTmp[6] = cone[6]; facesTmp[7] = cone[7]; /* Top */ 14951cfd6a4SMatthew G. Knepley facesTmp[8] = cone[0]; facesTmp[9] = cone[3]; facesTmp[10] = cone[5]; facesTmp[11] = cone[4]; /* Front */ 15051cfd6a4SMatthew G. Knepley facesTmp[12] = cone[2]; facesTmp[13] = cone[1]; facesTmp[14] = cone[7]; facesTmp[15] = cone[6]; /* Back */ 15151cfd6a4SMatthew G. Knepley facesTmp[16] = cone[3]; facesTmp[17] = cone[2]; facesTmp[18] = cone[6]; facesTmp[19] = cone[5]; /* Right */ 15251cfd6a4SMatthew G. Knepley facesTmp[20] = cone[0]; facesTmp[21] = cone[4]; facesTmp[22] = cone[7]; facesTmp[23] = cone[1]; /* Left */ 1539a5b13a2SMatthew G Knepley *faces = facesTmp; 1549a5b13a2SMatthew G Knepley } 1559a5b13a2SMatthew G Knepley if (numFaces) *numFaces = 6; 1569a5b13a2SMatthew G Knepley if (faceSize) *faceSize = 4; 1579f074e33SMatthew G Knepley break; 1589f074e33SMatthew G Knepley default: 15999836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 1609f074e33SMatthew G Knepley } 1619f074e33SMatthew G Knepley break; 1629f074e33SMatthew G Knepley default: 16399836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 1649f074e33SMatthew G Knepley } 1659f074e33SMatthew G Knepley PetscFunctionReturn(0); 1669f074e33SMatthew G Knepley } 1679f074e33SMatthew G Knepley 16899836e0eSStefano Zampini /* 16999836e0eSStefano Zampini DMPlexGetRawFacesHybrid_Internal - Gets groups of vertices that correspond to faces for the given cone using hybrid ordering (prisms) 17099836e0eSStefano Zampini */ 17199836e0eSStefano Zampini static PetscErrorCode DMPlexGetRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 17299836e0eSStefano Zampini { 17399836e0eSStefano Zampini PetscInt *facesTmp; 17499836e0eSStefano Zampini PetscInt maxConeSize, maxSupportSize; 17599836e0eSStefano Zampini PetscErrorCode ierr; 17699836e0eSStefano Zampini 17799836e0eSStefano Zampini PetscFunctionBegin; 17899836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17999836e0eSStefano Zampini if (faces && coneSize) PetscValidIntPointer(cone,4); 18099836e0eSStefano Zampini ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 18199836e0eSStefano Zampini if (faces) {ierr = DMGetWorkArray(dm, PetscSqr(PetscMax(maxConeSize, maxSupportSize)), MPIU_INT, &facesTmp);CHKERRQ(ierr);} 18299836e0eSStefano Zampini switch (dim) { 18399836e0eSStefano Zampini case 1: 18499836e0eSStefano Zampini switch (coneSize) { 18599836e0eSStefano Zampini case 2: 18699836e0eSStefano Zampini if (faces) { 18799836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 18899836e0eSStefano Zampini *faces = facesTmp; 18999836e0eSStefano Zampini } 19099836e0eSStefano Zampini if (numFaces) *numFaces = 2; 19199836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 19299836e0eSStefano Zampini if (faceSize) *faceSize = 1; 19399836e0eSStefano Zampini break; 19499836e0eSStefano Zampini default: 19599836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 19699836e0eSStefano Zampini } 19799836e0eSStefano Zampini break; 19899836e0eSStefano Zampini case 2: 19999836e0eSStefano Zampini switch (coneSize) { 20099836e0eSStefano Zampini case 4: 20199836e0eSStefano Zampini if (faces) { 20299836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; 20399836e0eSStefano Zampini facesTmp[2] = cone[2]; facesTmp[3] = cone[3]; 20499836e0eSStefano Zampini facesTmp[4] = cone[0]; facesTmp[5] = cone[2]; 20599836e0eSStefano Zampini facesTmp[6] = cone[1]; facesTmp[7] = cone[3]; 20699836e0eSStefano Zampini *faces = facesTmp; 20799836e0eSStefano Zampini } 20899836e0eSStefano Zampini if (numFaces) *numFaces = 4; 20999836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 21099836e0eSStefano Zampini if (faceSize) *faceSize = 2; 21199836e0eSStefano Zampini break; 21299836e0eSStefano Zampini default: 21399836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 21499836e0eSStefano Zampini } 21599836e0eSStefano Zampini break; 21699836e0eSStefano Zampini case 3: 21799836e0eSStefano Zampini switch (coneSize) { 21899836e0eSStefano Zampini case 6: /* triangular prism */ 21999836e0eSStefano Zampini if (faces) { 22099836e0eSStefano Zampini facesTmp[0] = cone[0]; facesTmp[1] = cone[1]; facesTmp[2] = cone[2]; facesTmp[3] = -1; /* Bottom */ 22199836e0eSStefano Zampini facesTmp[4] = cone[3]; facesTmp[5] = cone[4]; facesTmp[6] = cone[5]; facesTmp[7] = -1; /* Top */ 22299836e0eSStefano Zampini facesTmp[8] = cone[0]; facesTmp[9] = cone[1]; facesTmp[10] = cone[3]; facesTmp[11] = cone[4]; /* Back left */ 22399836e0eSStefano Zampini facesTmp[12] = cone[1]; facesTmp[13] = cone[2]; facesTmp[14] = cone[4]; facesTmp[15] = cone[5]; /* Back right */ 22499836e0eSStefano Zampini facesTmp[16] = cone[2]; facesTmp[17] = cone[0]; facesTmp[18] = cone[5]; facesTmp[19] = cone[3]; /* Front */ 22599836e0eSStefano Zampini *faces = facesTmp; 22699836e0eSStefano Zampini } 22799836e0eSStefano Zampini if (numFaces) *numFaces = 5; 22899836e0eSStefano Zampini if (numFacesNotH) *numFacesNotH = 2; 22999836e0eSStefano Zampini if (faceSize) *faceSize = -4; 23099836e0eSStefano Zampini break; 23199836e0eSStefano Zampini default: 23299836e0eSStefano Zampini SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cone size %D not supported for dimension %D", coneSize, dim); 23399836e0eSStefano Zampini } 23499836e0eSStefano Zampini break; 23599836e0eSStefano Zampini default: 23699836e0eSStefano Zampini SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Dimension %D not supported", dim); 23799836e0eSStefano Zampini } 23899836e0eSStefano Zampini PetscFunctionReturn(0); 23999836e0eSStefano Zampini } 24099836e0eSStefano Zampini 24199836e0eSStefano Zampini static PetscErrorCode DMPlexRestoreRawFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt coneSize, const PetscInt cone[], PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 24299836e0eSStefano Zampini { 24399836e0eSStefano Zampini PetscErrorCode ierr; 24499836e0eSStefano Zampini 24599836e0eSStefano Zampini PetscFunctionBegin; 24699836e0eSStefano Zampini if (faces) { ierr = DMRestoreWorkArray(dm, 0, MPIU_INT, (void *) faces);CHKERRQ(ierr); } 24799836e0eSStefano Zampini PetscFunctionReturn(0); 24899836e0eSStefano Zampini } 24999836e0eSStefano Zampini 25099836e0eSStefano Zampini static PetscErrorCode DMPlexGetFacesHybrid_Internal(DM dm, PetscInt dim, PetscInt p, PetscInt *numFaces, PetscInt *numFacesNotH, PetscInt *faceSize, const PetscInt *faces[]) 25199836e0eSStefano Zampini { 25299836e0eSStefano Zampini const PetscInt *cone = NULL; 25399836e0eSStefano Zampini PetscInt coneSize; 25499836e0eSStefano Zampini PetscErrorCode ierr; 25599836e0eSStefano Zampini 25699836e0eSStefano Zampini PetscFunctionBegin; 25799836e0eSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25899836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 25999836e0eSStefano Zampini ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 26099836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, dim, coneSize, cone, numFaces, numFacesNotH, faceSize, faces);CHKERRQ(ierr); 26199836e0eSStefano Zampini PetscFunctionReturn(0); 26299836e0eSStefano Zampini } 26399836e0eSStefano Zampini 2649a5b13a2SMatthew G Knepley /* This interpolates faces for cells at some stratum */ 2659a5b13a2SMatthew G Knepley static PetscErrorCode DMPlexInterpolateFaces_Internal(DM dm, PetscInt cellDepth, DM idm) 2669f074e33SMatthew G Knepley { 267d4efc6f1SMatthew G. Knepley DMLabel subpointMap; 2689a5b13a2SMatthew G Knepley PetscHashIJKL faceTable; 2699a5b13a2SMatthew G Knepley PetscInt *pStart, *pEnd; 2709a5b13a2SMatthew G Knepley PetscInt cellDim, depth, faceDepth = cellDepth, numPoints = 0, faceSizeAll = 0, face, c, d; 271e9fa77a1SMatthew G. Knepley PetscInt coneSizeH = 0, faceSizeAllH = 0, faceSizeAllT = 0, numCellFacesH = 0, faceT = 0, faceH, pMax = -1, dim, outerloop; 27299836e0eSStefano Zampini PetscInt cMax, fMax, eMax, vMax; 2739f074e33SMatthew G Knepley PetscErrorCode ierr; 2749f074e33SMatthew G Knepley 2759f074e33SMatthew G Knepley PetscFunctionBegin; 276c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 277d4efc6f1SMatthew G. Knepley /* HACK: I need a better way to determine face dimension, or an alternative to GetFaces() */ 278d4efc6f1SMatthew G. Knepley ierr = DMPlexGetSubpointMap(dm, &subpointMap);CHKERRQ(ierr); 279d4efc6f1SMatthew G. Knepley if (subpointMap) ++cellDim; 2809a5b13a2SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2819a5b13a2SMatthew G Knepley ++depth; 2829a5b13a2SMatthew G Knepley ++cellDepth; 2839a5b13a2SMatthew G Knepley cellDim -= depth - cellDepth; 284dcca6d9dSJed Brown ierr = PetscMalloc2(depth+1,&pStart,depth+1,&pEnd);CHKERRQ(ierr); 2859a5b13a2SMatthew G Knepley for (d = depth-1; d >= faceDepth; --d) { 2869a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d+1], &pEnd[d+1]);CHKERRQ(ierr); 2879f074e33SMatthew G Knepley } 2889a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, -1, NULL, &pStart[faceDepth]);CHKERRQ(ierr); 2899a5b13a2SMatthew G Knepley pEnd[faceDepth] = pStart[faceDepth]; 2909a5b13a2SMatthew G Knepley for (d = faceDepth-1; d >= 0; --d) { 2919a5b13a2SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2929f074e33SMatthew G Knepley } 29399836e0eSStefano Zampini cMax = fMax = eMax = vMax = PETSC_DETERMINE; 29499836e0eSStefano Zampini ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 29599836e0eSStefano Zampini if (cellDim == dim) { 29699836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 29799836e0eSStefano Zampini pMax = cMax; 29899836e0eSStefano Zampini } else if (cellDim == dim -1) { 29999836e0eSStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, &fMax, NULL, NULL);CHKERRQ(ierr); 30099836e0eSStefano Zampini pMax = fMax; 30199836e0eSStefano Zampini } 30299836e0eSStefano Zampini pMax = pMax < 0 ? pEnd[cellDepth] : pMax; 30399836e0eSStefano Zampini if (pMax < pEnd[cellDepth]) { 30499836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 30599836e0eSStefano Zampini PetscInt numCellFacesT, faceSize, cf; 3069f074e33SMatthew G Knepley 307e9fa77a1SMatthew G. Knepley /* First get normal cell face size (we now allow hybrid cells to meet normal cells on either hybrid or normal faces */ 3085ebdaad1SMatthew G. Knepley if (pStart[cellDepth] < pMax) {ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr);} 309e9fa77a1SMatthew G. Knepley 31099836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, pMax, &coneSizeH);CHKERRQ(ierr); 31199836e0eSStefano Zampini ierr = DMPlexGetCone(dm, pMax, &cone);CHKERRQ(ierr); 31299836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 31399836e0eSStefano Zampini if (faceSize < 0) { 31499836e0eSStefano Zampini PetscInt *sizes, minv, maxv; 31599836e0eSStefano Zampini 31699836e0eSStefano Zampini /* count vertices of hybrid and non-hybrid faces */ 31799836e0eSStefano Zampini ierr = PetscCalloc1(numCellFacesH, &sizes);CHKERRQ(ierr); 31899836e0eSStefano Zampini for (cf = 0; cf < numCellFacesT; ++cf) { /* These are the non-hybrid faces */ 31999836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 32099836e0eSStefano Zampini PetscInt f; 32199836e0eSStefano Zampini 32299836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf] += (cellFace[f] >= 0 ? 1 : 0); 32399836e0eSStefano Zampini } 32499836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesT, sizes);CHKERRQ(ierr); 32599836e0eSStefano Zampini minv = sizes[0]; 32699836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesT-1, 0)]; 32799836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for non-hybrid face %D != %D", minv, maxv); 328e9fa77a1SMatthew G. Knepley faceSizeAllT = minv; 329580bdb30SBarry Smith ierr = PetscArrayzero(sizes, numCellFacesH);CHKERRQ(ierr); 33099836e0eSStefano Zampini for (cf = numCellFacesT; cf < numCellFacesH; ++cf) { /* These are the hybrid faces */ 33199836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[-cf*faceSize]; 33299836e0eSStefano Zampini PetscInt f; 33399836e0eSStefano Zampini 33499836e0eSStefano Zampini for (f = 0; f < -faceSize; ++f) sizes[cf-numCellFacesT] += (cellFace[f] >= 0 ? 1 : 0); 33599836e0eSStefano Zampini } 33699836e0eSStefano Zampini ierr = PetscSortInt(numCellFacesH - numCellFacesT, sizes);CHKERRQ(ierr); 33799836e0eSStefano Zampini minv = sizes[0]; 33899836e0eSStefano Zampini maxv = sizes[PetscMax(numCellFacesH - numCellFacesT-1, 0)]; 33999836e0eSStefano Zampini ierr = PetscFree(sizes);CHKERRQ(ierr); 34099836e0eSStefano Zampini if (minv != maxv) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Different number of vertices for hybrid face %D != %D", minv, maxv); 34199836e0eSStefano Zampini faceSizeAllH = minv; 3425ebdaad1SMatthew G. Knepley if (!faceSizeAll) faceSizeAll = faceSizeAllT; 34399836e0eSStefano Zampini } else { /* the size of the faces in hybrid cells is the same */ 344e9fa77a1SMatthew G. Knepley faceSizeAll = faceSizeAllH = faceSizeAllT = faceSize; 34599836e0eSStefano Zampini } 34699836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, cone, &numCellFacesH, &numCellFacesT, &faceSize, &cellFaces);CHKERRQ(ierr); 34799836e0eSStefano Zampini } else if (pEnd[cellDepth] > pStart[cellDepth]) { 34899836e0eSStefano Zampini ierr = DMPlexGetFaces_Internal(dm, cellDim, pStart[cellDepth], NULL, &faceSizeAll, NULL);CHKERRQ(ierr); 349a1bcd873SMatthew G. Knepley faceSizeAllH = faceSizeAllT = faceSizeAll; 35099836e0eSStefano Zampini } 35199836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 35299836e0eSStefano Zampini 353b135d7daSStefano Zampini /* With hybrid grids, we first iterate on hybrid cells and start numbering the non-hybrid faces 35499836e0eSStefano Zampini Then, faces for non-hybrid cells are numbered. 35599836e0eSStefano Zampini This is to guarantee consistent orientations (all 0) of all the points in the cone of the hybrid cells */ 35699836e0eSStefano Zampini ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 35799836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 35899836e0eSStefano Zampini PetscInt start, end; 35999836e0eSStefano Zampini 36099836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 36199836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 36299836e0eSStefano Zampini for (c = start; c < end; ++c) { 36399836e0eSStefano Zampini const PetscInt *cellFaces; 364e9fa77a1SMatthew G. Knepley PetscInt numCellFaces, faceSize, faceSizeInc, faceSizeCheck, cf; 36599836e0eSStefano Zampini 36699836e0eSStefano Zampini if (c < pMax) { 3679a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 3689a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 369e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAll; 37099836e0eSStefano Zampini } else { /* Hybrid cell */ 37199836e0eSStefano Zampini const PetscInt *cone; 37299836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 37399836e0eSStefano Zampini 37499836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 37599836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 37699836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 37799836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 37899836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 37999836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 38099836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 38199836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 382e9fa77a1SMatthew G. Knepley faceSizeCheck = faceSizeAllT; 38399836e0eSStefano Zampini } 38499836e0eSStefano Zampini faceSizeInc = faceSize; 3859f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 38699836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 38799836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 3889a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 389e8f14785SLisandro Dalcin PetscHashIter iter; 390e8f14785SLisandro Dalcin PetscBool missing; 3919f074e33SMatthew G Knepley 39299836e0eSStefano Zampini if (faceSizeInc == 2) { 3939a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 3949a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 39599836e0eSStefano Zampini key.k = PETSC_MAX_INT; 39699836e0eSStefano Zampini key.l = PETSC_MAX_INT; 3979a5b13a2SMatthew G Knepley } else { 39899836e0eSStefano Zampini key.i = cellFace[0]; 39999836e0eSStefano Zampini key.j = cellFace[1]; 40099836e0eSStefano Zampini key.k = cellFace[2]; 40199836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 402302440fdSBarry Smith ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 4039f074e33SMatthew G Knepley } 40499836e0eSStefano Zampini /* this check is redundant for non-hybrid meshes */ 405e9fa77a1SMatthew G. Knepley if (faceSizeH != faceSizeCheck) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeCheck); 406e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 407e9fa77a1SMatthew G. Knepley if (missing) { 408e9fa77a1SMatthew G. Knepley ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr); 409e9fa77a1SMatthew G. Knepley if (c >= pMax) ++faceT; 410e9fa77a1SMatthew G. Knepley } 4119a5b13a2SMatthew G Knepley } 41299836e0eSStefano Zampini if (c < pMax) { 413439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 41499836e0eSStefano Zampini } else { 41599836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 41699836e0eSStefano Zampini } 41799836e0eSStefano Zampini } 41899836e0eSStefano Zampini } 41999836e0eSStefano Zampini pEnd[faceDepth] = face; 42099836e0eSStefano Zampini 42199836e0eSStefano Zampini /* Second pass for hybrid meshes: number hybrid faces */ 42299836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 42399836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 42499836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 42599836e0eSStefano Zampini 42699836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 42799836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 42899836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 42999836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 43099836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 43199836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 43299836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 43399836e0eSStefano Zampini PetscHashIJKLKey key; 43499836e0eSStefano Zampini PetscHashIter iter; 43599836e0eSStefano Zampini PetscBool missing; 43699836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 43799836e0eSStefano Zampini 43899836e0eSStefano Zampini if (faceSize == 2) { 43999836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 44099836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 44199836e0eSStefano Zampini key.k = PETSC_MAX_INT; 44299836e0eSStefano Zampini key.l = PETSC_MAX_INT; 44399836e0eSStefano Zampini } else { 44499836e0eSStefano Zampini key.i = cellFace[0]; 44599836e0eSStefano Zampini key.j = cellFace[1]; 44699836e0eSStefano Zampini key.k = cellFace[2]; 44799836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 44899836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 44999836e0eSStefano Zampini } 45099836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 45199836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 45299836e0eSStefano Zampini if (missing) {ierr = PetscHashIJKLIterSet(faceTable, iter, face++);CHKERRQ(ierr);} 45399836e0eSStefano Zampini } 45499836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 45599836e0eSStefano Zampini } 45699836e0eSStefano Zampini faceH = face - pEnd[faceDepth]; 45799836e0eSStefano Zampini if (faceH) { 45899836e0eSStefano Zampini if (fMax == PETSC_DETERMINE) fMax = pEnd[faceDepth]; 45999836e0eSStefano Zampini else if (eMax == PETSC_DETERMINE) eMax = pEnd[faceDepth]; 46099836e0eSStefano Zampini else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of unassigned hybrid facets %D for cellDim %D and dimension %D", faceH, cellDim, dim); 4619a5b13a2SMatthew G Knepley } 4629a5b13a2SMatthew G Knepley pEnd[faceDepth] = face; 4639a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 4649a5b13a2SMatthew G Knepley /* Count new points */ 4659a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4669a5b13a2SMatthew G Knepley numPoints += pEnd[d]-pStart[d]; 4679a5b13a2SMatthew G Knepley } 4689a5b13a2SMatthew G Knepley ierr = DMPlexSetChart(idm, 0, numPoints);CHKERRQ(ierr); 4699a5b13a2SMatthew G Knepley /* Set cone sizes */ 4709a5b13a2SMatthew G Knepley for (d = 0; d <= depth; ++d) { 4719a5b13a2SMatthew G Knepley PetscInt coneSize, p; 4729f074e33SMatthew G Knepley 4739a5b13a2SMatthew G Knepley if (d == faceDepth) { 474e9fa77a1SMatthew G. Knepley /* Now we have two cases: */ 475e9fa77a1SMatthew G. Knepley if (faceSizeAll == faceSizeAllT) { 4769a5b13a2SMatthew G Knepley /* I see no way to do this if we admit faces of different shapes */ 47799836e0eSStefano Zampini for (p = pStart[d]; p < pEnd[d]-faceH; ++p) { 4789a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 4799a5b13a2SMatthew G Knepley } 48099836e0eSStefano Zampini for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 48199836e0eSStefano Zampini ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 48299836e0eSStefano Zampini } 483e9fa77a1SMatthew G. Knepley } else if (faceSizeAll == faceSizeAllH) { 484e9fa77a1SMatthew G. Knepley for (p = pStart[d]; p < pStart[d]+faceT; ++p) { 485e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllT);CHKERRQ(ierr); 486e9fa77a1SMatthew G. Knepley } 487e9fa77a1SMatthew G. Knepley for (p = pStart[d]+faceT; p < pEnd[d]-faceH; ++p) { 488e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAll);CHKERRQ(ierr); 489e9fa77a1SMatthew G. Knepley } 490e9fa77a1SMatthew G. Knepley for (p = pEnd[d]-faceH; p < pEnd[d]; ++p) { 491e9fa77a1SMatthew G. Knepley ierr = DMPlexSetConeSize(idm, p, faceSizeAllH);CHKERRQ(ierr); 492e9fa77a1SMatthew G. Knepley } 493e9fa77a1SMatthew G. Knepley } else SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent faces sizes N: %D T: %D H: %D", faceSizeAll, faceSizeAllT, faceSizeAllH); 494a014044eSMatthew G Knepley } else if (d == cellDepth) { 495a014044eSMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 496a014044eSMatthew G Knepley /* Number of cell faces may be different from number of cell vertices*/ 49799836e0eSStefano Zampini if (p < pMax) { 498a014044eSMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, p, &coneSize, NULL, NULL);CHKERRQ(ierr); 49999836e0eSStefano Zampini } else { 50099836e0eSStefano Zampini ierr = DMPlexGetFacesHybrid_Internal(dm, cellDim, p, &coneSize, NULL, NULL, NULL);CHKERRQ(ierr); 50199836e0eSStefano Zampini } 502a014044eSMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 503a014044eSMatthew G Knepley } 5049a5b13a2SMatthew G Knepley } else { 5059a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5069a5b13a2SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 5079a5b13a2SMatthew G Knepley ierr = DMPlexSetConeSize(idm, p, coneSize);CHKERRQ(ierr); 5089f074e33SMatthew G Knepley } 5099f074e33SMatthew G Knepley } 5109f074e33SMatthew G Knepley } 5119f074e33SMatthew G Knepley ierr = DMSetUp(idm);CHKERRQ(ierr); 5129f074e33SMatthew G Knepley /* Get face cones from subsets of cell vertices */ 51399836e0eSStefano Zampini if (faceSizeAll > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSizeAll); 5149a5b13a2SMatthew G Knepley ierr = PetscHashIJKLCreate(&faceTable);CHKERRQ(ierr); 5159a5b13a2SMatthew G Knepley for (d = depth; d > cellDepth; --d) { 5169a5b13a2SMatthew G Knepley const PetscInt *cone; 5179a5b13a2SMatthew G Knepley PetscInt p; 5189a5b13a2SMatthew G Knepley 5199a5b13a2SMatthew G Knepley for (p = pStart[d]; p < pEnd[d]; ++p) { 5209a5b13a2SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 5219a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, p, cone);CHKERRQ(ierr); 5229a5b13a2SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &cone);CHKERRQ(ierr); 5239a5b13a2SMatthew G Knepley ierr = DMPlexSetConeOrientation(idm, p, cone);CHKERRQ(ierr); 5249f074e33SMatthew G Knepley } 5259a5b13a2SMatthew G Knepley } 52699836e0eSStefano Zampini for (outerloop = 0, face = pStart[faceDepth]; outerloop < 2; outerloop++) { 52799836e0eSStefano Zampini PetscInt start, end; 5289f074e33SMatthew G Knepley 52999836e0eSStefano Zampini start = outerloop == 0 ? pMax : pStart[cellDepth]; 53099836e0eSStefano Zampini end = outerloop == 0 ? pEnd[cellDepth] : pMax; 53199836e0eSStefano Zampini for (c = start; c < end; ++c) { 53299836e0eSStefano Zampini const PetscInt *cellFaces; 53399836e0eSStefano Zampini PetscInt numCellFaces, faceSize, faceSizeInc, cf; 53499836e0eSStefano Zampini 53599836e0eSStefano Zampini if (c < pMax) { 5369a5b13a2SMatthew G Knepley ierr = DMPlexGetFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 5379a5b13a2SMatthew G Knepley if (faceSize != faceSizeAll) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent face for cell %D of size %D != %D", c, faceSize, faceSizeAll); 53899836e0eSStefano Zampini } else { 53999836e0eSStefano Zampini const PetscInt *cone; 54099836e0eSStefano Zampini PetscInt numCellFacesN, coneSize; 54199836e0eSStefano Zampini 54299836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 54399836e0eSStefano Zampini if (coneSize != coneSizeH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid coneSize %D != %D", coneSize, coneSizeH); 54499836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 54599836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 54699836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected numCellFaces %D != %D for hybrid cell %D", numCellFaces, numCellFacesH, c); 54799836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 54899836e0eSStefano Zampini if (faceSize > 4) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Do not support interpolation of meshes with faces of %D vertices", faceSize); 54999836e0eSStefano Zampini numCellFaces = numCellFacesN; /* process only non-hybrid faces */ 55099836e0eSStefano Zampini } 55199836e0eSStefano Zampini faceSizeInc = faceSize; 5529f074e33SMatthew G Knepley for (cf = 0; cf < numCellFaces; ++cf) { 55399836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSizeInc]; 5549a5b13a2SMatthew G Knepley PetscHashIJKLKey key; 555e8f14785SLisandro Dalcin PetscHashIter iter; 556e8f14785SLisandro Dalcin PetscBool missing; 5579f074e33SMatthew G Knepley 55899836e0eSStefano Zampini if (faceSizeInc == 2) { 5599a5b13a2SMatthew G Knepley key.i = PetscMin(cellFace[0], cellFace[1]); 5609a5b13a2SMatthew G Knepley key.j = PetscMax(cellFace[0], cellFace[1]); 56199836e0eSStefano Zampini key.k = PETSC_MAX_INT; 56299836e0eSStefano Zampini key.l = PETSC_MAX_INT; 5639a5b13a2SMatthew G Knepley } else { 564e8f14785SLisandro Dalcin key.i = cellFace[0]; 565e8f14785SLisandro Dalcin key.j = cellFace[1]; 566e8f14785SLisandro Dalcin key.k = cellFace[2]; 56799836e0eSStefano Zampini key.l = faceSizeInc > 3 ? (cellFace[3] < 0 ? faceSize = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 56899836e0eSStefano Zampini ierr = PetscSortInt(faceSizeInc, (PetscInt *) &key);CHKERRQ(ierr); 5699f074e33SMatthew G Knepley } 570e8f14785SLisandro Dalcin ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 571735a0255SMatthew G. Knepley if (missing) { 5729a5b13a2SMatthew G Knepley ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 573e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 574735a0255SMatthew G. Knepley ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 5759a5b13a2SMatthew G Knepley } else { 5769a5b13a2SMatthew G Knepley const PetscInt *cone; 577735a0255SMatthew G. Knepley PetscInt coneSize, ornt, i, j, f; 5789f074e33SMatthew G Knepley 579e8f14785SLisandro Dalcin ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 5809a5b13a2SMatthew G Knepley ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 5812e1b13c2SMatthew G. Knepley /* Orient face: Do not allow reverse orientation at the first vertex */ 5829f074e33SMatthew G Knepley ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 5839f074e33SMatthew G Knepley ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 5849a5b13a2SMatthew G Knepley if (coneSize != faceSize) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSize); 5859a5b13a2SMatthew G Knepley /* - First find the initial vertex */ 5869a5b13a2SMatthew G Knepley for (i = 0; i < faceSize; ++i) if (cellFace[0] == cone[i]) break; 5879a5b13a2SMatthew G Knepley /* - Try forward comparison */ 5889a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+j)%faceSize]) break; 5899a5b13a2SMatthew G Knepley if (j == faceSize) { 5909a5b13a2SMatthew G Knepley if ((faceSize == 2) && (i == 1)) ornt = -2; 5919a5b13a2SMatthew G Knepley else ornt = i; 5929a5b13a2SMatthew G Knepley } else { 5939a5b13a2SMatthew G Knepley /* - Try backward comparison */ 5949a5b13a2SMatthew G Knepley for (j = 0; j < faceSize; ++j) if (cellFace[j] != cone[(i+faceSize-j)%faceSize]) break; 5952e1b13c2SMatthew G. Knepley if (j == faceSize) { 5962e1b13c2SMatthew G. Knepley if (i == 0) ornt = -faceSize; 597dc1a705cSMatthew G. Knepley else ornt = -i; 598e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 5999a5b13a2SMatthew G Knepley } 6009a5b13a2SMatthew G Knepley ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 6019f074e33SMatthew G Knepley } 6029f074e33SMatthew G Knepley } 60399836e0eSStefano Zampini if (c < pMax) { 604439ece16SMatthew G. Knepley ierr = DMPlexRestoreFaces_Internal(dm, cellDim, c, &numCellFaces, &faceSize, &cellFaces);CHKERRQ(ierr); 60599836e0eSStefano Zampini } else { 60699836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSizeH, NULL, NULL, NULL, NULL, &cellFaces);CHKERRQ(ierr); 6079f074e33SMatthew G Knepley } 60899836e0eSStefano Zampini } 60999836e0eSStefano Zampini } 61099836e0eSStefano Zampini /* Second pass for hybrid meshes: orient hybrid faces */ 61199836e0eSStefano Zampini for (c = pMax; c < pEnd[cellDepth]; ++c) { 61299836e0eSStefano Zampini const PetscInt *cellFaces, *cone; 61399836e0eSStefano Zampini PetscInt numCellFaces, numCellFacesN, faceSize, cf, coneSize; 61499836e0eSStefano Zampini 61599836e0eSStefano Zampini ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 61699836e0eSStefano Zampini ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 61799836e0eSStefano Zampini ierr = DMPlexGetRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 61899836e0eSStefano Zampini if (numCellFaces != numCellFacesH) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected hybrid numCellFaces %D != %D", numCellFaces, numCellFacesH); 61999836e0eSStefano Zampini faceSize = PetscMax(faceSize, -faceSize); 62099836e0eSStefano Zampini for (cf = numCellFacesN; cf < numCellFaces; ++cf) { /* These are the hybrid faces */ 62199836e0eSStefano Zampini const PetscInt *cellFace = &cellFaces[cf*faceSize]; 62299836e0eSStefano Zampini PetscHashIJKLKey key; 62399836e0eSStefano Zampini PetscHashIter iter; 62499836e0eSStefano Zampini PetscBool missing; 62599836e0eSStefano Zampini PetscInt faceSizeH = faceSize; 62699836e0eSStefano Zampini 62799836e0eSStefano Zampini if (faceSize == 2) { 62899836e0eSStefano Zampini key.i = PetscMin(cellFace[0], cellFace[1]); 62999836e0eSStefano Zampini key.j = PetscMax(cellFace[0], cellFace[1]); 63099836e0eSStefano Zampini key.k = PETSC_MAX_INT; 63199836e0eSStefano Zampini key.l = PETSC_MAX_INT; 63299836e0eSStefano Zampini } else { 63399836e0eSStefano Zampini key.i = cellFace[0]; 63499836e0eSStefano Zampini key.j = cellFace[1]; 63599836e0eSStefano Zampini key.k = cellFace[2]; 63699836e0eSStefano Zampini key.l = faceSize > 3 ? (cellFace[3] < 0 ? faceSizeH = 3, PETSC_MAX_INT : cellFace[3]) : PETSC_MAX_INT; 63799836e0eSStefano Zampini ierr = PetscSortInt(faceSize, (PetscInt *) &key);CHKERRQ(ierr); 63899836e0eSStefano Zampini } 63999836e0eSStefano Zampini if (faceSizeH != faceSizeAllH) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_SUP, "Unexpected number of vertices for hybrid face %D of point %D -> %D != %D", cf, c, faceSizeH, faceSizeAllH); 64099836e0eSStefano Zampini ierr = PetscHashIJKLPut(faceTable, key, &iter, &missing);CHKERRQ(ierr); 64199836e0eSStefano Zampini if (missing) { 64299836e0eSStefano Zampini ierr = DMPlexSetCone(idm, face, cellFace);CHKERRQ(ierr); 64399836e0eSStefano Zampini ierr = PetscHashIJKLIterSet(faceTable, iter, face);CHKERRQ(ierr); 64499836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, face++);CHKERRQ(ierr); 64599836e0eSStefano Zampini } else { 646e9fa77a1SMatthew G. Knepley PetscInt fv[4] = {0, 1, 2, 3}; 64799836e0eSStefano Zampini const PetscInt *cone; 64899836e0eSStefano Zampini PetscInt coneSize, ornt, i, j, f; 649a74221b0SStefano Zampini PetscBool q2h = PETSC_FALSE; 65099836e0eSStefano Zampini 65199836e0eSStefano Zampini ierr = PetscHashIJKLIterGet(faceTable, iter, &f);CHKERRQ(ierr); 65299836e0eSStefano Zampini ierr = DMPlexInsertCone(idm, c, cf, f);CHKERRQ(ierr); 65399836e0eSStefano Zampini /* Orient face: Do not allow reverse orientation at the first vertex */ 65499836e0eSStefano Zampini ierr = DMPlexGetConeSize(idm, f, &coneSize);CHKERRQ(ierr); 65599836e0eSStefano Zampini ierr = DMPlexGetCone(idm, f, &cone);CHKERRQ(ierr); 65699836e0eSStefano Zampini if (coneSize != faceSizeH) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of face vertices %D for face %D should be %D", coneSize, f, faceSizeH); 657e9fa77a1SMatthew G. Knepley /* Hybrid faces are stored as tensor products of edges, so to compare them to normal faces, we have to flip */ 658a74221b0SStefano Zampini if (faceSize == 4 && c >= pMax && faceSizeAll != faceSizeAllT && f < pEnd[faceDepth] - faceH) {q2h = PETSC_TRUE; fv[2] = 3; fv[3] = 2;} 65999836e0eSStefano Zampini /* - First find the initial vertex */ 660e9fa77a1SMatthew G. Knepley for (i = 0; i < faceSizeH; ++i) if (cellFace[fv[0]] == cone[i]) break; 661a74221b0SStefano Zampini if (q2h) { /* Matt's case: hybrid faces meeting with non-hybrid faces. This is a case that is not (and will not be) supported in general by the refinements */ 66299836e0eSStefano Zampini /* - Try forward comparison */ 663e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+j)%faceSizeH]) break; 66499836e0eSStefano Zampini if (j == faceSizeH) { 66599836e0eSStefano Zampini if ((faceSizeH == 2) && (i == 1)) ornt = -2; 66699836e0eSStefano Zampini else ornt = i; 66799836e0eSStefano Zampini } else { 66899836e0eSStefano Zampini /* - Try backward comparison */ 669e9fa77a1SMatthew G. Knepley for (j = 0; j < faceSizeH; ++j) if (cellFace[fv[j]] != cone[(i+faceSizeH-j)%faceSizeH]) break; 67099836e0eSStefano Zampini if (j == faceSizeH) { 67199836e0eSStefano Zampini if (i == 0) ornt = -faceSizeH; 67299836e0eSStefano Zampini else ornt = -i; 673e9fa77a1SMatthew G. Knepley } else SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not determine orientation of face %D in cell %D", f, c); 67499836e0eSStefano Zampini } 675a74221b0SStefano Zampini } else { 676a74221b0SStefano Zampini /* when matching hybrid faces in 3D, only few cases are possible. 677a74221b0SStefano Zampini Face traversal however can no longer follow the usual convention, this seems a serious issue to me */ 678a74221b0SStefano Zampini PetscInt tquad_map[4][4] = { {PETSC_MIN_INT, 0,PETSC_MIN_INT,PETSC_MIN_INT}, 679a74221b0SStefano Zampini { -1,PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT}, 680a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT,PETSC_MIN_INT, 1}, 681a74221b0SStefano Zampini {PETSC_MIN_INT,PETSC_MIN_INT, -2,PETSC_MIN_INT} }; 682a74221b0SStefano Zampini PetscInt i2; 683a74221b0SStefano Zampini 684a74221b0SStefano Zampini /* find the second vertex */ 685a74221b0SStefano Zampini for (i2 = 0; i2 < faceSizeH; ++i2) if (cellFace[fv[1]] == cone[i2]) break; 686a74221b0SStefano Zampini switch (faceSizeH) { 687a74221b0SStefano Zampini case 2: 688a74221b0SStefano Zampini ornt = i ? -2 : 0; 689a74221b0SStefano Zampini break; 690a74221b0SStefano Zampini case 4: 691a74221b0SStefano Zampini ornt = tquad_map[i][i2]; 692a74221b0SStefano Zampini break; 693a74221b0SStefano Zampini default: 694a74221b0SStefano Zampini SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unhandled face size %D for face %D in cell %D", faceSizeH, f, c); 695a74221b0SStefano Zampini 696a74221b0SStefano Zampini } 697a74221b0SStefano Zampini } 69899836e0eSStefano Zampini ierr = DMPlexInsertConeOrientation(idm, c, cf, ornt);CHKERRQ(ierr); 69999836e0eSStefano Zampini } 70099836e0eSStefano Zampini } 70199836e0eSStefano Zampini ierr = DMPlexRestoreRawFacesHybrid_Internal(dm, cellDim, coneSize, cone, &numCellFaces, &numCellFacesN, &faceSize, &cellFaces);CHKERRQ(ierr); 70299836e0eSStefano Zampini } 70399836e0eSStefano Zampini if (face != pEnd[faceDepth]) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid number of faces %D should be %D", face-pStart[faceDepth], pEnd[faceDepth]-pStart[faceDepth]); 704c907b753SJed Brown ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 7059a5b13a2SMatthew G Knepley ierr = PetscHashIJKLDestroy(&faceTable);CHKERRQ(ierr); 7066551a8c7SMatthew G. Knepley ierr = PetscFree2(pStart,pEnd);CHKERRQ(ierr); 70799836e0eSStefano Zampini ierr = DMPlexSetHybridBounds(idm, cMax, fMax, eMax, vMax);CHKERRQ(ierr); 7089a5b13a2SMatthew G Knepley ierr = DMPlexSymmetrize(idm);CHKERRQ(ierr); 7099a5b13a2SMatthew G Knepley ierr = DMPlexStratify(idm);CHKERRQ(ierr); 7109f074e33SMatthew G Knepley PetscFunctionReturn(0); 7119f074e33SMatthew G Knepley } 7129f074e33SMatthew G Knepley 713f80536cbSVaclav Hapla static PetscErrorCode SortRmineRremoteByRemote_Private(PetscSF sf, PetscInt *rmine1[], PetscInt *rremote1[]) 714f80536cbSVaclav Hapla { 715f80536cbSVaclav Hapla PetscInt nleaves; 716f80536cbSVaclav Hapla PetscInt nranks; 717a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 718a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL, *rmine=NULL, *rremote=NULL; 719f80536cbSVaclav Hapla PetscInt n, o, r; 720f80536cbSVaclav Hapla PetscErrorCode ierr; 721f80536cbSVaclav Hapla 722f80536cbSVaclav Hapla PetscFunctionBegin; 723dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, &rmine, &rremote);CHKERRQ(ierr); 724f80536cbSVaclav Hapla nleaves = roffset[nranks]; 725f80536cbSVaclav Hapla ierr = PetscMalloc2(nleaves, rmine1, nleaves, rremote1);CHKERRQ(ierr); 726f80536cbSVaclav Hapla for (r=0; r<nranks; r++) { 727f80536cbSVaclav Hapla /* simultaneously sort rank-wise portions of rmine & rremote by values in rremote 728f80536cbSVaclav Hapla - to unify order with the other side */ 729f80536cbSVaclav Hapla o = roffset[r]; 730f80536cbSVaclav Hapla n = roffset[r+1] - o; 731580bdb30SBarry Smith ierr = PetscArraycpy(&(*rmine1)[o], &rmine[o], n);CHKERRQ(ierr); 732580bdb30SBarry Smith ierr = PetscArraycpy(&(*rremote1)[o], &rremote[o], n);CHKERRQ(ierr); 733f80536cbSVaclav Hapla ierr = PetscSortIntWithArray(n, &(*rremote1)[o], &(*rmine1)[o]);CHKERRQ(ierr); 734f80536cbSVaclav Hapla } 735f80536cbSVaclav Hapla PetscFunctionReturn(0); 736f80536cbSVaclav Hapla } 737f80536cbSVaclav Hapla 73827d0e99aSVaclav Hapla PetscErrorCode DMPlexOrientInterface_Internal(DM dm) 7392e745bdaSMatthew G. Knepley { 74027d0e99aSVaclav Hapla /* Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 74127d0e99aSVaclav Hapla PetscInt masterCone[2]; 742cae7fe92SVaclav Hapla PetscInt (*roots)[2], (*leaves)[2]; 7438a650c75SVaclav Hapla PetscMPIInt (*rootsRanks)[2], (*leavesRanks)[2]; 74427d0e99aSVaclav Hapla 74527d0e99aSVaclav Hapla PetscSF sf=NULL; 746a0d42dbcSVaclav Hapla const PetscInt *locals=NULL; 747a0d42dbcSVaclav Hapla const PetscSFNode *remotes=NULL; 7488a650c75SVaclav Hapla PetscInt nroots, nleaves, p, c; 749f80536cbSVaclav Hapla PetscInt nranks, n, o, r; 750a0d42dbcSVaclav Hapla const PetscMPIInt *ranks=NULL; 751a0d42dbcSVaclav Hapla const PetscInt *roffset=NULL; 752a0d42dbcSVaclav Hapla PetscInt *rmine1=NULL, *rremote1=NULL; /* rmine and rremote copies simultaneously sorted by rank and rremote */ 753a0d42dbcSVaclav Hapla const PetscInt *cone=NULL; 754adeface4SVaclav Hapla PetscInt coneSize, ind0; 7552e745bdaSMatthew G. Knepley MPI_Comm comm; 75627d0e99aSVaclav Hapla PetscMPIInt rank,size; 7572e745bdaSMatthew G. Knepley PetscInt debug = 0; 7582e745bdaSMatthew G. Knepley PetscErrorCode ierr; 7592e745bdaSMatthew G. Knepley 7602e745bdaSMatthew G. Knepley PetscFunctionBegin; 761df6a9fadSVaclav Hapla ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 7622e745bdaSMatthew G. Knepley ierr = PetscSFGetGraph(sf, &nroots, &nleaves, &locals, &remotes);CHKERRQ(ierr); 7633ede9f65SMatthew G. Knepley if (nroots < 0) PetscFunctionReturn(0); 764f80536cbSVaclav Hapla ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 765dec1416fSJunchao Zhang ierr = PetscSFGetRootRanks(sf, &nranks, &ranks, &roffset, NULL, NULL);CHKERRQ(ierr); 766dc21a0bfSVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-before_fix_dm_view");CHKERRQ(ierr); 76727d0e99aSVaclav Hapla #if defined(PETSC_USE_DEBUG) 768dc21a0bfSVaclav Hapla ierr = DMPlexCheckPointSF(dm);CHKERRQ(ierr); 769dc21a0bfSVaclav Hapla #endif 770f80536cbSVaclav Hapla ierr = SortRmineRremoteByRemote_Private(sf, &rmine1, &rremote1);CHKERRQ(ierr); 7718a650c75SVaclav Hapla ierr = PetscMalloc4(nroots, &roots, nroots, &leaves, nroots, &rootsRanks, nroots, &leavesRanks);CHKERRQ(ierr); 7722e745bdaSMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 7732e745bdaSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 77427d0e99aSVaclav Hapla ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr); 7759e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 7769e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 7779e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 77827d0e99aSVaclav Hapla if (coneSize < 2) { 77927d0e99aSVaclav Hapla for (c = 0; c < 2; c++) { 78027d0e99aSVaclav Hapla roots[p][c] = -1; 78127d0e99aSVaclav Hapla rootsRanks[p][c] = -1; 78227d0e99aSVaclav Hapla } 78327d0e99aSVaclav Hapla continue; 78427d0e99aSVaclav Hapla } 7852e745bdaSMatthew G. Knepley /* Translate all points to root numbering */ 7868a650c75SVaclav Hapla for (c = 0; c < 2; c++) { 7878a650c75SVaclav Hapla ierr = PetscFindInt(cone[c], nleaves, locals, &ind0);CHKERRQ(ierr); 7888a650c75SVaclav Hapla if (ind0 < 0) { 7898a650c75SVaclav Hapla roots[p][c] = cone[c]; 7908a650c75SVaclav Hapla rootsRanks[p][c] = rank; 791c8148b97SVaclav Hapla } else { 7928a650c75SVaclav Hapla roots[p][c] = remotes[ind0].index; 7938a650c75SVaclav Hapla rootsRanks[p][c] = remotes[ind0].rank; 7948a650c75SVaclav Hapla } 7952e745bdaSMatthew G. Knepley } 7962e745bdaSMatthew G. Knepley } 7979e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 7988ccb905dSVaclav Hapla for (c = 0; c < 2; c++) { 7998ccb905dSVaclav Hapla leaves[p][c] = -2; 8008ccb905dSVaclav Hapla leavesRanks[p][c] = -2; 8018ccb905dSVaclav Hapla } 802c8148b97SVaclav Hapla } 8032e745bdaSMatthew G. Knepley ierr = PetscSFBcastBegin(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8048a650c75SVaclav Hapla ierr = PetscSFBcastBegin(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 8052e745bdaSMatthew G. Knepley ierr = PetscSFBcastEnd(sf, MPIU_2INT, roots, leaves);CHKERRQ(ierr); 8068a650c75SVaclav Hapla ierr = PetscSFBcastEnd(sf, MPI_2INT, rootsRanks, leavesRanks);CHKERRQ(ierr); 807c8148b97SVaclav Hapla if (debug) {ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr);} 80827d0e99aSVaclav Hapla if (debug && rank == 0) {ierr = PetscSynchronizedPrintf(comm, "Referenced roots\n");CHKERRQ(ierr);} 8099e24d8a0SVaclav Hapla for (p = 0; p < nroots; ++p) { 8109e24d8a0SVaclav Hapla if (leaves[p][0] < 0) continue; 8119e24d8a0SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 8129e24d8a0SVaclav Hapla ierr = DMPlexGetCone(dm, p, &cone);CHKERRQ(ierr); 81327d0e99aSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, "[%d] %4D: cone=[%4D %4D] roots=[(%d,%4D) (%d,%4D)] leaves=[(%d,%4D) (%d,%4D)]", rank, p, cone[0], cone[1], rootsRanks[p][0], roots[p][0], rootsRanks[p][1], roots[p][1], leavesRanks[p][0], leaves[p][0], leavesRanks[p][1], leaves[p][1]);CHKERRQ(ierr);} 81482f5c0aeSVaclav Hapla if ((leaves[p][0] != roots[p][0]) || (leaves[p][1] != roots[p][1]) || (leavesRanks[p][0] != rootsRanks[p][0]) || (leavesRanks[p][1] != rootsRanks[p][1])) { 81527d0e99aSVaclav Hapla /* Translate these two leaves to my cone points; masterCone means desired order p's cone points */ 816f80536cbSVaclav Hapla for (c = 0; c < 2; c++) { 81727d0e99aSVaclav Hapla if (leavesRanks[p][c] == rank) { 81827d0e99aSVaclav Hapla /* A local leave is just taken as it is */ 81927d0e99aSVaclav Hapla masterCone[c] = leaves[p][c]; 82027d0e99aSVaclav Hapla continue; 82127d0e99aSVaclav Hapla } 822f80536cbSVaclav Hapla /* Find index of rank leavesRanks[p][c] among remote ranks */ 823f80536cbSVaclav Hapla /* No need for PetscMPIIntCast because these integers were originally cast from PetscMPIInt. */ 824f80536cbSVaclav Hapla ierr = PetscFindMPIInt((PetscMPIInt)leavesRanks[p][c], nranks, ranks, &r);CHKERRQ(ierr); 82527d0e99aSVaclav Hapla if (PetscUnlikely(r < 0)) SETERRQ7(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D cone[%D]=%D root (%d,%D) leave (%d,%D): leave rank not found among remote ranks",p,c,cone[c],rootsRanks[p][c],roots[p][c],leavesRanks[p][c],leaves[p][c]); 82627d0e99aSVaclav Hapla if (PetscUnlikely(ranks[r] < 0 || ranks[r] >= size)) SETERRQ5(PETSC_COMM_SELF, PETSC_ERR_PLIB, "p=%D c=%D commsize=%d: ranks[%D] = %d makes no sense",p,c,size,r,ranks[r]); 827f80536cbSVaclav Hapla /* Find point leaves[p][c] among remote points aimed at rank leavesRanks[p][c] */ 828f80536cbSVaclav Hapla o = roffset[r]; 829f80536cbSVaclav Hapla n = roffset[r+1] - o; 830f80536cbSVaclav Hapla ierr = PetscFindInt(leaves[p][c], n, &rremote1[o], &ind0);CHKERRQ(ierr); 83127d0e99aSVaclav Hapla if (PetscUnlikely(ind0 < 0)) SETERRQ7(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %D cone[%D]=%D root (%d,%D) leave (%d,%D): corresponding remote point not found - it seems there is missing connection in point SF!",p,c,cone[c],rootsRanks[p][c],roots[p][c],leavesRanks[p][c],leaves[p][c]); 832f80536cbSVaclav Hapla /* Get the corresponding local point */ 833f80536cbSVaclav Hapla masterCone[c] = rmine1[o+ind0];CHKERRQ(ierr); 834f80536cbSVaclav Hapla } 83527d0e99aSVaclav Hapla if (debug) {ierr = PetscSynchronizedPrintf(comm, " masterCone=[%4D %4D]\n", masterCone[0], masterCone[1]);CHKERRQ(ierr);} 83627d0e99aSVaclav Hapla /* Set the desired order of p's cone points and fix orientations accordingly */ 837f80536cbSVaclav Hapla /* Vaclav's note: Here we only compare first 2 points of the cone. Full cone size would lead to stronger self-checking. */ 838f80536cbSVaclav Hapla ierr = DMPlexOrientCell(dm, p, 2, masterCone);CHKERRQ(ierr); 83927d0e99aSVaclav Hapla } else if (debug) {ierr = PetscSynchronizedPrintf(comm, " ==\n");CHKERRQ(ierr);} 84023aaf07bSVaclav Hapla } 84127d0e99aSVaclav Hapla if (debug) { 84227d0e99aSVaclav Hapla ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 84327d0e99aSVaclav Hapla ierr = MPI_Barrier(comm);CHKERRQ(ierr); 8442e745bdaSMatthew G. Knepley } 845adeface4SVaclav Hapla ierr = DMViewFromOptions(dm, NULL, "-after_fix_dm_view");CHKERRQ(ierr); 8468a650c75SVaclav Hapla ierr = PetscFree4(roots, leaves, rootsRanks, leavesRanks);CHKERRQ(ierr); 8477c7bb832SVaclav Hapla ierr = PetscFree2(rmine1, rremote1);CHKERRQ(ierr); 8482e745bdaSMatthew G. Knepley PetscFunctionReturn(0); 8492e745bdaSMatthew G. Knepley } 8502e745bdaSMatthew G. Knepley 8512e72742cSMatthew G. Knepley static PetscErrorCode IntArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], const char valname[], PetscInt n, const PetscInt a[]) 8527bffde78SMichael Lange { 8532e72742cSMatthew G. Knepley PetscInt idx; 8542e72742cSMatthew G. Knepley PetscMPIInt rank; 8552e72742cSMatthew G. Knepley PetscBool flg; 8567bffde78SMichael Lange PetscErrorCode ierr; 8577bffde78SMichael Lange 8587bffde78SMichael Lange PetscFunctionBegin; 8592e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 8602e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 8612e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8622e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 8632e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D %s %D\n", rank, idxname, idx, valname, a[idx]);CHKERRQ(ierr);} 8642e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8652e72742cSMatthew G. Knepley PetscFunctionReturn(0); 8662e72742cSMatthew G. Knepley } 8672e72742cSMatthew G. Knepley 8682e72742cSMatthew G. Knepley static PetscErrorCode SFNodeArrayViewFromOptions(MPI_Comm comm, const char opt[], const char name[], const char idxname[], PetscInt n, const PetscSFNode a[]) 8692e72742cSMatthew G. Knepley { 8702e72742cSMatthew G. Knepley PetscInt idx; 8712e72742cSMatthew G. Knepley PetscMPIInt rank; 8722e72742cSMatthew G. Knepley PetscBool flg; 8732e72742cSMatthew G. Knepley PetscErrorCode ierr; 8742e72742cSMatthew G. Knepley 8752e72742cSMatthew G. Knepley PetscFunctionBegin; 8762e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, NULL, opt, &flg);CHKERRQ(ierr); 8772e72742cSMatthew G. Knepley if (!flg) PetscFunctionReturn(0); 8782e72742cSMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 8792e72742cSMatthew G. Knepley ierr = PetscSynchronizedPrintf(comm, "[%d]%s:\n", rank, name);CHKERRQ(ierr); 8802e72742cSMatthew G. Knepley if (idxname) { 8812e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]%s %D rank %D index %D\n", rank, idxname, idx, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 8822e72742cSMatthew G. Knepley } else { 8832e72742cSMatthew G. Knepley for (idx = 0; idx < n; ++idx) {ierr = PetscSynchronizedPrintf(comm, "[%d]rank %D index %D\n", rank, a[idx].rank, a[idx].index);CHKERRQ(ierr);} 8842e72742cSMatthew G. Knepley } 8852e72742cSMatthew G. Knepley ierr = PetscSynchronizedFlush(comm, NULL);CHKERRQ(ierr); 8862e72742cSMatthew G. Knepley PetscFunctionReturn(0); 8872e72742cSMatthew G. Knepley } 8882e72742cSMatthew G. Knepley 8892e72742cSMatthew G. Knepley static PetscErrorCode DMPlexMapToLocalPoint(PetscHMapIJ roothash, const PetscInt localPoints[], PetscMPIInt rank, PetscSFNode remotePoint, PetscInt *localPoint) 8902e72742cSMatthew G. Knepley { 8912e72742cSMatthew G. Knepley PetscErrorCode ierr; 8922e72742cSMatthew G. Knepley 8932e72742cSMatthew G. Knepley PetscFunctionBegin; 8942e72742cSMatthew G. Knepley if (remotePoint.rank == rank) { 8952e72742cSMatthew G. Knepley *localPoint = remotePoint.index; 8962e72742cSMatthew G. Knepley } else { 8972e72742cSMatthew G. Knepley PetscHashIJKey key; 8982e72742cSMatthew G. Knepley PetscInt root; 8992e72742cSMatthew G. Knepley 9002e72742cSMatthew G. Knepley key.i = remotePoint.index; 9012e72742cSMatthew G. Knepley key.j = remotePoint.rank; 9022e72742cSMatthew G. Knepley ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 9032e72742cSMatthew G. Knepley if (root >= 0) { 9042e72742cSMatthew G. Knepley *localPoint = localPoints[root]; 9052e72742cSMatthew G. Knepley } else PetscFunctionReturn(1); 9062e72742cSMatthew G. Knepley } 9072e72742cSMatthew G. Knepley PetscFunctionReturn(0); 9082e72742cSMatthew G. Knepley } 9092e72742cSMatthew G. Knepley 9102e72742cSMatthew G. Knepley /*@ 9112e72742cSMatthew G. Knepley DMPlexInterpolatePointSF - Insert interpolated points in the overlap into the PointSF in parallel, following local interpolation 9122e72742cSMatthew G. Knepley 913d083f849SBarry Smith Collective on dm 9142e72742cSMatthew G. Knepley 9152e72742cSMatthew G. Knepley Input Parameters: 9162e72742cSMatthew G. Knepley + dm - The interpolated DM 9172e72742cSMatthew G. Knepley - pointSF - The initial SF without interpolated points 9182e72742cSMatthew G. Knepley 9192e72742cSMatthew G. Knepley Output Parameter: 9202e72742cSMatthew G. Knepley . pointSF - The SF including interpolated points 9212e72742cSMatthew G. Knepley 922*f0cfc026SVaclav Hapla Level: developer 9232e72742cSMatthew G. Knepley 9242e72742cSMatthew G. Knepley Note: All debugging for this process can be turned on with the options: -dm_interp_pre_view -petscsf_interp_pre_view -petscsection_interp_candidate_view -petscsection_interp_candidate_remote_view -petscsection_interp_claim_view -petscsf_interp_pre_view -dmplex_interp_debug 9252e72742cSMatthew G. Knepley 9262e72742cSMatthew G. Knepley .seealso: DMPlexInterpolate(), DMPlexUninterpolate() 9272e72742cSMatthew G. Knepley @*/ 928e53487d3SMatthew G. Knepley PetscErrorCode DMPlexInterpolatePointSF(DM dm, PetscSF pointSF) 9292e72742cSMatthew G. Knepley { 9302e72742cSMatthew G. Knepley /* 9312e72742cSMatthew G. Knepley Okay, the algorithm is: 9322e72742cSMatthew G. Knepley - Take each point in the overlap (root) 9332e72742cSMatthew G. Knepley - Look at the neighboring points in the overlap (candidates) 9342e72742cSMatthew G. Knepley - Send these candidate points to neighbors 9352e72742cSMatthew G. Knepley - Neighbor checks for edge between root and candidate 9362e72742cSMatthew G. Knepley - If edge is found, it replaces candidate point with edge point 9372e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 9382e72742cSMatthew G. Knepley - Original guy checks for edges, different from original candidate, and gets its own edge 9392e72742cSMatthew G. Knepley - This pair is put into SF 9402e72742cSMatthew G. Knepley 9412e72742cSMatthew G. Knepley We need a new algorithm that tolerates groups larger than 2. 9422e72742cSMatthew G. Knepley - Take each point in the overlap (root) 9432e72742cSMatthew G. Knepley - Find all collections of points in the overlap which make faces (do early join) 9442e72742cSMatthew G. Knepley - Send collections as candidates (add size as first number) 94566aa2a39SMatthew G. Knepley - Make sure to send collection to all owners of all overlap points in collection 9462e72742cSMatthew G. Knepley - Neighbor check for face in collections 9472e72742cSMatthew G. Knepley - If face is found, it replaces candidate point with face point 9482e72742cSMatthew G. Knepley - Send back the overwritten candidates (claims) 9492e72742cSMatthew G. Knepley - Original guy checks for faces, different from original candidate, and gets its own face 9502e72742cSMatthew G. Knepley - This pair is put into SF 9512e72742cSMatthew G. Knepley */ 9522e72742cSMatthew G. Knepley PetscHMapI leafhash; 9532e72742cSMatthew G. Knepley PetscHMapIJ roothash; 9542e72742cSMatthew G. Knepley const PetscInt *localPoints, *rootdegree; 9552e72742cSMatthew G. Knepley const PetscSFNode *remotePoints; 9562e72742cSMatthew G. Knepley PetscSFNode *candidates, *candidatesRemote, *claims; 9572e72742cSMatthew G. Knepley PetscSection candidateSection, candidateSectionRemote, claimSection; 9582e72742cSMatthew G. Knepley PetscInt numLeaves, l, numRoots, r, candidatesSize, candidatesRemoteSize; 959*f0cfc026SVaclav Hapla PetscMPIInt rank; 9602e72742cSMatthew G. Knepley PetscHashIJKey key; 961*f0cfc026SVaclav Hapla PetscBool debug = PETSC_FALSE, flg; 9622e72742cSMatthew G. Knepley PetscErrorCode ierr; 9632e72742cSMatthew G. Knepley 9642e72742cSMatthew G. Knepley PetscFunctionBegin; 965*f0cfc026SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 966*f0cfc026SVaclav Hapla PetscValidHeaderSpecific(pointSF, PETSCSF_CLASSID, 2); 9672e72742cSMatthew G. Knepley ierr = PetscOptionsHasName(NULL, ((PetscObject) dm)->prefix, "-dmplex_interp_debug", &debug);CHKERRQ(ierr); 9687bffde78SMichael Lange ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 969*f0cfc026SVaclav Hapla ierr = DMPlexIsDistributed(dm, &flg);CHKERRQ(ierr); 970*f0cfc026SVaclav Hapla if (!flg) PetscFunctionReturn(0); 971f240e3b7SVaclav Hapla ierr = DMPlexGetOverlap(dm, &r);CHKERRQ(ierr); 972f240e3b7SVaclav Hapla if (r) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Interpolation of overlapped DMPlex not implemented yet"); 973*f0cfc026SVaclav Hapla ierr = PetscSFGetGraph(pointSF, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 974*f0cfc026SVaclav Hapla if (numRoots < 0) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "This DMPlex is distributed but its PointSF has no graph set"); 9752e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) dm, NULL, "-dm_interp_pre_view");CHKERRQ(ierr); 9762e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) pointSF, NULL, "-petscsf_interp_pre_view");CHKERRQ(ierr); 97725afeb17SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 9787bffde78SMichael Lange /* Build hashes of points in the SF for efficient lookup */ 979e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&leafhash);CHKERRQ(ierr); 980e8f14785SLisandro Dalcin ierr = PetscHMapIJCreate(&roothash);CHKERRQ(ierr); 9812e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 9822e72742cSMatthew G. Knepley key.i = remotePoints[l].index; 9832e72742cSMatthew G. Knepley key.j = remotePoints[l].rank; 9842e72742cSMatthew G. Knepley ierr = PetscHMapISet(leafhash, localPoints[l], l);CHKERRQ(ierr); 9852e72742cSMatthew G. Knepley ierr = PetscHMapIJSet(roothash, key, l);CHKERRQ(ierr); 9867bffde78SMichael Lange } 98766aa2a39SMatthew G. Knepley /* Compute root degree to identify shared points */ 9882e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeBegin(pointSF, &rootdegree);CHKERRQ(ierr); 9892e72742cSMatthew G. Knepley ierr = PetscSFComputeDegreeEnd(pointSF, &rootdegree);CHKERRQ(ierr); 9902e72742cSMatthew G. Knepley ierr = IntArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-interp_root_degree_view", "Root degree", "point", "degree", numRoots, rootdegree);CHKERRQ(ierr); 99166aa2a39SMatthew G. Knepley /* Build a section / SFNode array of candidate points (face bd points) in the cone(support(leaf)), 99266aa2a39SMatthew G. Knepley where each candidate is defined by a set of remote points (roots) for the other points that define the face. */ 9937bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSection);CHKERRQ(ierr); 9947bffde78SMichael Lange ierr = PetscSectionSetChart(candidateSection, 0, numRoots);CHKERRQ(ierr); 9957bffde78SMichael Lange { 99666aa2a39SMatthew G. Knepley PetscHMapIJ facehash; 9972e72742cSMatthew G. Knepley 99866aa2a39SMatthew G. Knepley ierr = PetscHMapIJCreate(&facehash);CHKERRQ(ierr); 9992e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 10002e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 10012e72742cSMatthew G. Knepley const PetscInt *support; 10022e72742cSMatthew G. Knepley PetscInt supportSize, s; 10032e72742cSMatthew G. Knepley 10042e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 10052e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 10062e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 10072e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 10082e72742cSMatthew G. Knepley const PetscInt face = support[s]; 10092e72742cSMatthew G. Knepley const PetscInt *cone; 10102e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 10112e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 10122e72742cSMatthew G. Knepley 10132e72742cSMatthew G. Knepley /* Only add face once */ 10142e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 101566aa2a39SMatthew G. Knepley key.i = localPoint; 101666aa2a39SMatthew G. Knepley key.j = face; 101766aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 10182e72742cSMatthew G. Knepley if (f >= 0) continue; 10192e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 10202e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 10212e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 10222e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10232e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 10242e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10252e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 10262e72742cSMatthew G. Knepley } 10272e72742cSMatthew G. Knepley if (isFace) { 102866aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found shared face %D\n", rank, face);CHKERRQ(ierr);} 102966aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 10302e72742cSMatthew G. Knepley ierr = PetscSectionAddDof(candidateSection, localPoint, coneSize);CHKERRQ(ierr); 10317bffde78SMichael Lange } 10327bffde78SMichael Lange } 10332e72742cSMatthew G. Knepley } 10342e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 103566aa2a39SMatthew G. Knepley ierr = PetscHMapIJClear(facehash);CHKERRQ(ierr); 10367bffde78SMichael Lange ierr = PetscSectionSetUp(candidateSection);CHKERRQ(ierr); 10377bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSection, &candidatesSize);CHKERRQ(ierr); 10387bffde78SMichael Lange ierr = PetscMalloc1(candidatesSize, &candidates);CHKERRQ(ierr); 10392e72742cSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 10402e72742cSMatthew G. Knepley const PetscInt localPoint = localPoints[l]; 10412e72742cSMatthew G. Knepley const PetscInt *support; 10422e72742cSMatthew G. Knepley PetscInt supportSize, s, offset, idx = 0; 10432e72742cSMatthew G. Knepley 10442e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local point %D\n", rank, localPoint);CHKERRQ(ierr);} 10452e72742cSMatthew G. Knepley ierr = PetscSectionGetOffset(candidateSection, localPoint, &offset);CHKERRQ(ierr); 10462e72742cSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, localPoint, &supportSize);CHKERRQ(ierr); 10472e72742cSMatthew G. Knepley ierr = DMPlexGetSupport(dm, localPoint, &support);CHKERRQ(ierr); 10482e72742cSMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 10492e72742cSMatthew G. Knepley const PetscInt face = support[s]; 10502e72742cSMatthew G. Knepley const PetscInt *cone; 10512e72742cSMatthew G. Knepley PetscInt coneSize, c, f, root; 10522e72742cSMatthew G. Knepley PetscBool isFace = PETSC_TRUE; 10532e72742cSMatthew G. Knepley 10542e72742cSMatthew G. Knepley /* Only add face once */ 10552e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Support point %D\n", rank, face);CHKERRQ(ierr);} 105666aa2a39SMatthew G. Knepley key.i = localPoint; 105766aa2a39SMatthew G. Knepley key.j = face; 105866aa2a39SMatthew G. Knepley ierr = PetscHMapIJGet(facehash, key, &f);CHKERRQ(ierr); 10592e72742cSMatthew G. Knepley if (f >= 0) continue; 10602e72742cSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, face, &coneSize);CHKERRQ(ierr); 10612e72742cSMatthew G. Knepley ierr = DMPlexGetCone(dm, face, &cone);CHKERRQ(ierr); 10622e72742cSMatthew G. Knepley /* If a cone point does not map to leaves on any proc, then do not put face in SF */ 10632e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10642e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Cone point %D\n", rank, cone[c]);CHKERRQ(ierr);} 10652e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10662e72742cSMatthew G. Knepley if (!rootdegree[cone[c]] && (root < 0)) {isFace = PETSC_FALSE; break;} 10672e72742cSMatthew G. Knepley } 10682e72742cSMatthew G. Knepley if (isFace) { 106966aa2a39SMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding shared face %D at idx %D\n", rank, face, idx);CHKERRQ(ierr);} 107066aa2a39SMatthew G. Knepley ierr = PetscHMapIJSet(facehash, key, l);CHKERRQ(ierr); 10712e72742cSMatthew G. Knepley candidates[offset+idx].rank = -1; 10722e72742cSMatthew G. Knepley candidates[offset+idx++].index = coneSize-1; 10732e72742cSMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 10742e72742cSMatthew G. Knepley if (cone[c] == localPoint) continue; 10752e72742cSMatthew G. Knepley if (rootdegree[cone[c]]) { 10762e72742cSMatthew G. Knepley candidates[offset+idx].rank = rank; 10772e72742cSMatthew G. Knepley candidates[offset+idx++].index = cone[c]; 10782e72742cSMatthew G. Knepley } else { 10792e72742cSMatthew G. Knepley ierr = PetscHMapIGet(leafhash, cone[c], &root);CHKERRQ(ierr); 10802e72742cSMatthew G. Knepley if (root < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot locate local point %D in SF", cone[c]); 10812e72742cSMatthew G. Knepley candidates[offset+idx++] = remotePoints[root]; 10827bffde78SMichael Lange } 10837bffde78SMichael Lange } 10842e72742cSMatthew G. Knepley } 10852e72742cSMatthew G. Knepley } 10862e72742cSMatthew G. Knepley } 10872e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 108866aa2a39SMatthew G. Knepley ierr = PetscHMapIJDestroy(&facehash);CHKERRQ(ierr); 10892e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSection, NULL, "-petscsection_interp_candidate_view");CHKERRQ(ierr); 10902e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_view", "Candidates", NULL, candidatesSize, candidates);CHKERRQ(ierr); 10917bffde78SMichael Lange } 10927bffde78SMichael Lange /* Gather candidate section / array pair into the root partition via inverse(multi(pointSF)). */ 10932e72742cSMatthew G. Knepley /* Note that this section is indexed by offsets into leaves, not by point number */ 10947bffde78SMichael Lange { 10957bffde78SMichael Lange PetscSF sfMulti, sfInverse, sfCandidates; 10967bffde78SMichael Lange PetscInt *remoteOffsets; 10972e72742cSMatthew G. Knepley 10987bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 10997bffde78SMichael Lange ierr = PetscSFCreateInverseSF(sfMulti, &sfInverse);CHKERRQ(ierr); 11007bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &candidateSectionRemote);CHKERRQ(ierr); 11017bffde78SMichael Lange ierr = PetscSFDistributeSection(sfInverse, candidateSection, &remoteOffsets, candidateSectionRemote);CHKERRQ(ierr); 11027bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfInverse, candidateSection, remoteOffsets, candidateSectionRemote, &sfCandidates);CHKERRQ(ierr); 11037bffde78SMichael Lange ierr = PetscSectionGetStorageSize(candidateSectionRemote, &candidatesRemoteSize);CHKERRQ(ierr); 11047bffde78SMichael Lange ierr = PetscMalloc1(candidatesRemoteSize, &candidatesRemote);CHKERRQ(ierr); 11057bffde78SMichael Lange ierr = PetscSFBcastBegin(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 11067bffde78SMichael Lange ierr = PetscSFBcastEnd(sfCandidates, MPIU_2INT, candidates, candidatesRemote);CHKERRQ(ierr); 11077bffde78SMichael Lange ierr = PetscSFDestroy(&sfInverse);CHKERRQ(ierr); 11087bffde78SMichael Lange ierr = PetscSFDestroy(&sfCandidates);CHKERRQ(ierr); 11097bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 11102e72742cSMatthew G. Knepley 11112e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) candidateSectionRemote, NULL, "-petscsection_interp_candidate_remote_view");CHKERRQ(ierr); 11122e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_candidate_remote_view", "Remote Candidates", NULL, candidatesRemoteSize, candidatesRemote);CHKERRQ(ierr); 11137bffde78SMichael Lange } 11142e72742cSMatthew G. Knepley /* */ 11157bffde78SMichael Lange { 11162e72742cSMatthew G. Knepley PetscInt idx; 11172e72742cSMatthew G. Knepley /* There is a section point for every leaf attached to a given root point */ 11182e72742cSMatthew G. Knepley for (r = 0, idx = 0; r < numRoots; ++r) { 11192e72742cSMatthew G. Knepley PetscInt deg; 11202e72742cSMatthew G. Knepley for (deg = 0; deg < rootdegree[r]; ++deg, ++idx) { 11212e72742cSMatthew G. Knepley PetscInt offset, dof, d; 11222e72742cSMatthew G. Knepley 11237bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSectionRemote, idx, &dof);CHKERRQ(ierr); 11247bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSectionRemote, idx, &offset);CHKERRQ(ierr); 11252e72742cSMatthew G. Knepley for (d = 0; d < dof; ++d) { 11262e72742cSMatthew G. Knepley const PetscInt sizeInd = offset+d; 11272e72742cSMatthew G. Knepley const PetscInt numPoints = candidatesRemote[sizeInd].index; 11282e72742cSMatthew G. Knepley const PetscInt *join = NULL; 11292e72742cSMatthew G. Knepley PetscInt points[1024], p, joinSize; 11302e72742cSMatthew G. Knepley 11312e72742cSMatthew G. Knepley points[0] = r; 11322e72742cSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 11332e72742cSMatthew G. Knepley ierr = DMPlexMapToLocalPoint(roothash, localPoints, rank, candidatesRemote[offset+(++d)], &points[p+1]); 11342e72742cSMatthew G. Knepley if (ierr) {d += numPoints-1 - p; break;} /* We got a point not in our overlap */ 11352e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking local candidate %D\n", rank, points[p+1]);CHKERRQ(ierr);} 11367bffde78SMichael Lange } 11372e72742cSMatthew G. Knepley if (ierr) continue; 11382e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11397bffde78SMichael Lange if (joinSize == 1) { 11402e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Adding face %D at idx %D\n", rank, join[0], sizeInd);CHKERRQ(ierr);} 11412e72742cSMatthew G. Knepley candidatesRemote[sizeInd].rank = rank; 11422e72742cSMatthew G. Knepley candidatesRemote[sizeInd].index = join[0]; 11437bffde78SMichael Lange } 11442e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11457bffde78SMichael Lange } 11467bffde78SMichael Lange } 11477bffde78SMichael Lange } 11482e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 11497bffde78SMichael Lange } 11507bffde78SMichael Lange /* Push claims back to receiver via the MultiSF and derive new pointSF mapping on receiver */ 11517bffde78SMichael Lange { 11527bffde78SMichael Lange PetscSF sfMulti, sfClaims, sfPointNew; 11537bffde78SMichael Lange PetscSFNode *remotePointsNew; 11542e72742cSMatthew G. Knepley PetscHMapI claimshash; 11552e72742cSMatthew G. Knepley PetscInt *remoteOffsets, *localPointsNew; 11562e72742cSMatthew G. Knepley PetscInt claimsSize, pStart, pEnd, root, numLocalNew, p, d; 11572e72742cSMatthew G. Knepley 11587bffde78SMichael Lange ierr = PetscSFGetMultiSF(pointSF, &sfMulti);CHKERRQ(ierr); 11597bffde78SMichael Lange ierr = PetscSectionCreate(PetscObjectComm((PetscObject) dm), &claimSection);CHKERRQ(ierr); 11607bffde78SMichael Lange ierr = PetscSFDistributeSection(sfMulti, candidateSectionRemote, &remoteOffsets, claimSection);CHKERRQ(ierr); 11617bffde78SMichael Lange ierr = PetscSFCreateSectionSF(sfMulti, candidateSectionRemote, remoteOffsets, claimSection, &sfClaims);CHKERRQ(ierr); 11622e72742cSMatthew G. Knepley ierr = PetscSectionGetStorageSize(claimSection, &claimsSize);CHKERRQ(ierr); 11632e72742cSMatthew G. Knepley ierr = PetscMalloc1(claimsSize, &claims);CHKERRQ(ierr); 11647bffde78SMichael Lange ierr = PetscSFBcastBegin(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 11657bffde78SMichael Lange ierr = PetscSFBcastEnd(sfClaims, MPIU_2INT, candidatesRemote, claims);CHKERRQ(ierr); 11667bffde78SMichael Lange ierr = PetscSFDestroy(&sfClaims);CHKERRQ(ierr); 11677bffde78SMichael Lange ierr = PetscFree(remoteOffsets);CHKERRQ(ierr); 11682e72742cSMatthew G. Knepley ierr = PetscObjectViewFromOptions((PetscObject) claimSection, NULL, "-petscsection_interp_claim_view");CHKERRQ(ierr); 11692e72742cSMatthew G. Knepley ierr = SFNodeArrayViewFromOptions(PetscObjectComm((PetscObject) dm), "-petscsection_interp_claim_view", "Claims", NULL, claimsSize, claims);CHKERRQ(ierr); 11707bffde78SMichael Lange /* Walk the original section of local supports and add an SF entry for each updated item */ 1171e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&claimshash);CHKERRQ(ierr); 11727bffde78SMichael Lange for (p = 0; p < numRoots; ++p) { 11732e72742cSMatthew G. Knepley PetscInt dof, offset; 11742e72742cSMatthew G. Knepley 11752e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Checking root for claims %D\n", rank, p);CHKERRQ(ierr);} 11767bffde78SMichael Lange ierr = PetscSectionGetDof(candidateSection, p, &dof);CHKERRQ(ierr); 11777bffde78SMichael Lange ierr = PetscSectionGetOffset(candidateSection, p, &offset);CHKERRQ(ierr); 11782e72742cSMatthew G. Knepley for (d = 0; d < dof;) { 11792e72742cSMatthew G. Knepley if (claims[offset+d].rank >= 0) { 11802e72742cSMatthew G. Knepley const PetscInt faceInd = offset+d; 11812e72742cSMatthew G. Knepley const PetscInt numPoints = candidates[faceInd].index; 11822e72742cSMatthew G. Knepley const PetscInt *join = NULL; 11832e72742cSMatthew G. Knepley PetscInt joinSize, points[1024], c; 11842e72742cSMatthew G. Knepley 11852e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found claim for remote point (%D, %D)\n", rank, claims[faceInd].rank, claims[faceInd].index);CHKERRQ(ierr);} 11862e72742cSMatthew G. Knepley points[0] = p; 11872e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[0]);CHKERRQ(ierr);} 11882e72742cSMatthew G. Knepley for (c = 0, ++d; c < numPoints; ++c, ++d) { 1189e8f14785SLisandro Dalcin key.i = candidates[offset+d].index; 1190e8f14785SLisandro Dalcin key.j = candidates[offset+d].rank; 1191e8f14785SLisandro Dalcin ierr = PetscHMapIJGet(roothash, key, &root);CHKERRQ(ierr); 11922e72742cSMatthew G. Knepley points[c+1] = localPoints[root]; 11932e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] point %D\n", rank, points[c+1]);CHKERRQ(ierr);} 11942e72742cSMatthew G. Knepley } 11952e72742cSMatthew G. Knepley ierr = DMPlexGetJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 11962e72742cSMatthew G. Knepley if (joinSize == 1) { 11972e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedPrintf(PetscObjectComm((PetscObject) dm), "[%d] Found local face %D\n", rank, join[0]);CHKERRQ(ierr);} 11982e72742cSMatthew G. Knepley ierr = PetscHMapISet(claimshash, join[0], faceInd);CHKERRQ(ierr); 11992e72742cSMatthew G. Knepley } 12002e72742cSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, numPoints+1, points, &joinSize, &join);CHKERRQ(ierr); 12012e72742cSMatthew G. Knepley } else d += claims[offset+d].index+1; 12027bffde78SMichael Lange } 12037bffde78SMichael Lange } 12042e72742cSMatthew G. Knepley if (debug) {ierr = PetscSynchronizedFlush(PetscObjectComm((PetscObject) dm), NULL);CHKERRQ(ierr);} 12057bffde78SMichael Lange /* Create new pointSF from hashed claims */ 1206e8f14785SLisandro Dalcin ierr = PetscHMapIGetSize(claimshash, &numLocalNew);CHKERRQ(ierr); 12077bffde78SMichael Lange ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 12087bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &localPointsNew);CHKERRQ(ierr); 12097bffde78SMichael Lange ierr = PetscMalloc1(numLeaves + numLocalNew, &remotePointsNew);CHKERRQ(ierr); 12107bffde78SMichael Lange for (p = 0; p < numLeaves; ++p) { 12117bffde78SMichael Lange localPointsNew[p] = localPoints[p]; 12127bffde78SMichael Lange remotePointsNew[p].index = remotePoints[p].index; 12137bffde78SMichael Lange remotePointsNew[p].rank = remotePoints[p].rank; 12147bffde78SMichael Lange } 1215f3190fc2SToby Isaac p = numLeaves; 1216e8f14785SLisandro Dalcin ierr = PetscHMapIGetKeys(claimshash, &p, localPointsNew);CHKERRQ(ierr); 1217f3190fc2SToby Isaac ierr = PetscSortInt(numLocalNew, &localPointsNew[numLeaves]);CHKERRQ(ierr); 12187bffde78SMichael Lange for (p = numLeaves; p < numLeaves + numLocalNew; ++p) { 12192e72742cSMatthew G. Knepley PetscInt offset; 1220e8f14785SLisandro Dalcin ierr = PetscHMapIGet(claimshash, localPointsNew[p], &offset);CHKERRQ(ierr); 12217bffde78SMichael Lange remotePointsNew[p] = claims[offset]; 12227bffde78SMichael Lange } 12237bffde78SMichael Lange ierr = PetscSFCreate(PetscObjectComm((PetscObject) dm), &sfPointNew);CHKERRQ(ierr); 12247bffde78SMichael Lange ierr = PetscSFSetGraph(sfPointNew, pEnd-pStart, numLeaves+numLocalNew, localPointsNew, PETSC_OWN_POINTER, remotePointsNew, PETSC_OWN_POINTER);CHKERRQ(ierr); 12257bffde78SMichael Lange ierr = DMSetPointSF(dm, sfPointNew);CHKERRQ(ierr); 12267bffde78SMichael Lange ierr = PetscSFDestroy(&sfPointNew);CHKERRQ(ierr); 1227e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&claimshash);CHKERRQ(ierr); 12287bffde78SMichael Lange } 1229e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&leafhash);CHKERRQ(ierr); 1230e8f14785SLisandro Dalcin ierr = PetscHMapIJDestroy(&roothash);CHKERRQ(ierr); 12317bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSection);CHKERRQ(ierr); 12327bffde78SMichael Lange ierr = PetscSectionDestroy(&candidateSectionRemote);CHKERRQ(ierr); 12337bffde78SMichael Lange ierr = PetscSectionDestroy(&claimSection);CHKERRQ(ierr); 12347bffde78SMichael Lange ierr = PetscFree(candidates);CHKERRQ(ierr); 12357bffde78SMichael Lange ierr = PetscFree(candidatesRemote);CHKERRQ(ierr); 12367bffde78SMichael Lange ierr = PetscFree(claims);CHKERRQ(ierr); 123725afeb17SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_InterpolateSF,dm,0,0,0);CHKERRQ(ierr); 12387bffde78SMichael Lange PetscFunctionReturn(0); 12397bffde78SMichael Lange } 12407bffde78SMichael Lange 1241248eb259SVaclav Hapla /*@ 124280330477SMatthew G. Knepley DMPlexInterpolate - Take in a cell-vertex mesh and return one with all intermediate faces, edges, etc. 124380330477SMatthew G. Knepley 1244d083f849SBarry Smith Collective on dm 124580330477SMatthew G. Knepley 1246e56d480eSMatthew G. Knepley Input Parameters: 1247e56d480eSMatthew G. Knepley + dm - The DMPlex object with only cells and vertices 124810a67516SMatthew G. Knepley - dmInt - The interpolated DM 124980330477SMatthew G. Knepley 125080330477SMatthew G. Knepley Output Parameter: 12514e3744c5SMatthew G. Knepley . dmInt - The complete DMPlex object 125280330477SMatthew G. Knepley 125380330477SMatthew G. Knepley Level: intermediate 125480330477SMatthew G. Knepley 125595452b02SPatrick Sanan Notes: 125695452b02SPatrick Sanan It does not copy over the coordinates. 125743eeeb2dSStefano Zampini 125843eeeb2dSStefano Zampini .seealso: DMPlexUninterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 125980330477SMatthew G. Knepley @*/ 12609f074e33SMatthew G Knepley PetscErrorCode DMPlexInterpolate(DM dm, DM *dmInt) 12619f074e33SMatthew G Knepley { 1262a7748839SVaclav Hapla DMPlexInterpolatedFlag interpolated; 12639a5b13a2SMatthew G Knepley DM idm, odm = dm; 12647bffde78SMichael Lange PetscSF sfPoint; 12652e1b13c2SMatthew G. Knepley PetscInt depth, dim, d; 126610a67516SMatthew G. Knepley const char *name; 1267b325530aSVaclav Hapla PetscBool flg=PETSC_TRUE; 12689f074e33SMatthew G Knepley PetscErrorCode ierr; 12699f074e33SMatthew G Knepley 12709f074e33SMatthew G Knepley PetscFunctionBegin; 127110a67516SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 127210a67516SMatthew G. Knepley PetscValidPointer(dmInt, 2); 1273a72f3261SMatthew G. Knepley ierr = PetscLogEventBegin(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 12742e1b13c2SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1275c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1276827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); 1277827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_PARTIAL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 1278827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_FULL) { 127976b791aaSMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 128076b791aaSMatthew G. Knepley idm = dm; 1281b21b8912SMatthew G. Knepley } else { 12829a5b13a2SMatthew G Knepley for (d = 1; d < dim; ++d) { 12839a5b13a2SMatthew G Knepley /* Create interpolated mesh */ 128410a67516SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &idm);CHKERRQ(ierr); 12859a5b13a2SMatthew G Knepley ierr = DMSetType(idm, DMPLEX);CHKERRQ(ierr); 1286c73cfb54SMatthew G. Knepley ierr = DMSetDimension(idm, dim);CHKERRQ(ierr); 12877bffde78SMichael Lange if (depth > 0) { 12887bffde78SMichael Lange ierr = DMPlexInterpolateFaces_Internal(odm, 1, idm);CHKERRQ(ierr); 12897bffde78SMichael Lange ierr = DMGetPointSF(odm, &sfPoint);CHKERRQ(ierr); 12902e72742cSMatthew G. Knepley ierr = DMPlexInterpolatePointSF(idm, sfPoint);CHKERRQ(ierr); 12917bffde78SMichael Lange } 12929a5b13a2SMatthew G Knepley if (odm != dm) {ierr = DMDestroy(&odm);CHKERRQ(ierr);} 12939a5b13a2SMatthew G Knepley odm = idm; 12949f074e33SMatthew G Knepley } 129510a67516SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) dm, &name);CHKERRQ(ierr); 129610a67516SMatthew G. Knepley ierr = PetscObjectSetName((PetscObject) idm, name);CHKERRQ(ierr); 129710a67516SMatthew G. Knepley ierr = DMPlexCopyCoordinates(dm, idm);CHKERRQ(ierr); 12985d80c0bfSVaclav Hapla ierr = DMCopyLabels(dm, idm, PETSC_COPY_VALUES, PETSC_FALSE);CHKERRQ(ierr); 1299b325530aSVaclav Hapla ierr = PetscOptionsGetBool(((PetscObject)dm)->options, ((PetscObject)dm)->prefix, "-dm_plex_interpolate_orient_interfaces", &flg, NULL);CHKERRQ(ierr); 130027d0e99aSVaclav Hapla if (flg) {ierr = DMPlexOrientInterface_Internal(idm);CHKERRQ(ierr);} 130184699f70SSatish Balay } 130243eeeb2dSStefano Zampini { 130343eeeb2dSStefano Zampini PetscBool isper; 130443eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 130543eeeb2dSStefano Zampini const DMBoundaryType *bd; 130643eeeb2dSStefano Zampini 130743eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 130843eeeb2dSStefano Zampini ierr = DMSetPeriodicity(idm,isper,maxCell,L,bd);CHKERRQ(ierr); 130943eeeb2dSStefano Zampini } 1310827c4036SVaclav Hapla /* This function makes the mesh fully interpolated on all ranks */ 1311827c4036SVaclav Hapla { 1312827c4036SVaclav Hapla DM_Plex *plex = (DM_Plex *) dm->data; 1313827c4036SVaclav Hapla plex->interpolated = plex->interpolatedCollective = DMPLEX_INTERPOLATED_FULL; 1314827c4036SVaclav Hapla } 13159a5b13a2SMatthew G Knepley *dmInt = idm; 1316a72f3261SMatthew G. Knepley ierr = PetscLogEventEnd(DMPLEX_Interpolate,dm,0,0,0);CHKERRQ(ierr); 13179f074e33SMatthew G Knepley PetscFunctionReturn(0); 13189f074e33SMatthew G Knepley } 131907b0a1fcSMatthew G Knepley 132080330477SMatthew G. Knepley /*@ 132180330477SMatthew G. Knepley DMPlexCopyCoordinates - Copy coordinates from one mesh to another with the same vertices 132280330477SMatthew G. Knepley 1323d083f849SBarry Smith Collective on dmA 132480330477SMatthew G. Knepley 132580330477SMatthew G. Knepley Input Parameter: 132680330477SMatthew G. Knepley . dmA - The DMPlex object with initial coordinates 132780330477SMatthew G. Knepley 132880330477SMatthew G. Knepley Output Parameter: 132980330477SMatthew G. Knepley . dmB - The DMPlex object with copied coordinates 133080330477SMatthew G. Knepley 133180330477SMatthew G. Knepley Level: intermediate 133280330477SMatthew G. Knepley 133380330477SMatthew G. Knepley Note: This is typically used when adding pieces other than vertices to a mesh 133480330477SMatthew G. Knepley 133565f90189SJed Brown .seealso: DMCopyLabels(), DMGetCoordinates(), DMGetCoordinatesLocal(), DMGetCoordinateDM(), DMGetCoordinateSection() 133680330477SMatthew G. Knepley @*/ 133707b0a1fcSMatthew G Knepley PetscErrorCode DMPlexCopyCoordinates(DM dmA, DM dmB) 133807b0a1fcSMatthew G Knepley { 133907b0a1fcSMatthew G Knepley Vec coordinatesA, coordinatesB; 134043eeeb2dSStefano Zampini VecType vtype; 134107b0a1fcSMatthew G Knepley PetscSection coordSectionA, coordSectionB; 134207b0a1fcSMatthew G Knepley PetscScalar *coordsA, *coordsB; 13430bedd6beSMatthew G. Knepley PetscInt spaceDim, Nf, vStartA, vStartB, vEndA, vEndB, coordSizeB, v, d; 134443eeeb2dSStefano Zampini PetscInt cStartA, cEndA, cStartB, cEndB, cS, cE; 134543eeeb2dSStefano Zampini PetscBool lc = PETSC_FALSE; 134607b0a1fcSMatthew G Knepley PetscErrorCode ierr; 134707b0a1fcSMatthew G Knepley 134807b0a1fcSMatthew G Knepley PetscFunctionBegin; 134943eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 135043eeeb2dSStefano Zampini PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 135176b791aaSMatthew G. Knepley if (dmA == dmB) PetscFunctionReturn(0); 135207b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmA, 0, &vStartA, &vEndA);CHKERRQ(ierr); 135307b0a1fcSMatthew G Knepley ierr = DMPlexGetDepthStratum(dmB, 0, &vStartB, &vEndB);CHKERRQ(ierr); 135407b0a1fcSMatthew G Knepley if ((vEndA-vStartA) != (vEndB-vStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of vertices in first DM %d != %d in the second DM", vEndA-vStartA, vEndB-vStartB); 135543eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmA, 0, &cStartA, &cEndA);CHKERRQ(ierr); 135643eeeb2dSStefano Zampini ierr = DMPlexGetHeightStratum(dmB, 0, &cStartB, &cEndB);CHKERRQ(ierr); 135769d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmA, &coordSectionA);CHKERRQ(ierr); 135869d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dmB, &coordSectionB);CHKERRQ(ierr); 1359972bc18aSToby Isaac if (coordSectionA == coordSectionB) PetscFunctionReturn(0); 13600bedd6beSMatthew G. Knepley ierr = PetscSectionGetNumFields(coordSectionA, &Nf);CHKERRQ(ierr); 13610bedd6beSMatthew G. Knepley if (!Nf) PetscFunctionReturn(0); 13620bedd6beSMatthew G. Knepley if (Nf > 1) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of coordinate fields must be 1, not %D", Nf); 1363df26b574SMatthew G. Knepley if (!coordSectionB) { 1364df26b574SMatthew G. Knepley PetscInt dim; 1365df26b574SMatthew G. Knepley 1366df26b574SMatthew G. Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject) coordSectionA), &coordSectionB);CHKERRQ(ierr); 1367df26b574SMatthew G. Knepley ierr = DMGetCoordinateDim(dmA, &dim);CHKERRQ(ierr); 1368df26b574SMatthew G. Knepley ierr = DMSetCoordinateSection(dmB, dim, coordSectionB);CHKERRQ(ierr); 1369df26b574SMatthew G. Knepley ierr = PetscObjectDereference((PetscObject) coordSectionB);CHKERRQ(ierr); 1370df26b574SMatthew G. Knepley } 137107b0a1fcSMatthew G Knepley ierr = PetscSectionSetNumFields(coordSectionB, 1);CHKERRQ(ierr); 137207b0a1fcSMatthew G Knepley ierr = PetscSectionGetFieldComponents(coordSectionA, 0, &spaceDim);CHKERRQ(ierr); 137307b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldComponents(coordSectionB, 0, spaceDim);CHKERRQ(ierr); 137443eeeb2dSStefano Zampini ierr = PetscSectionGetChart(coordSectionA, &cS, &cE);CHKERRQ(ierr); 137543eeeb2dSStefano Zampini if (cStartA <= cS && cS < cEndA) { /* localized coordinates */ 1376367003a6SStefano Zampini if ((cEndA-cStartA) != (cEndB-cStartB)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "The number of cells in first DM %D != %D in the second DM", cEndA-cStartA, cEndB-cStartB); 137743eeeb2dSStefano Zampini cS = cS - cStartA + cStartB; 137843eeeb2dSStefano Zampini cE = vEndB; 137943eeeb2dSStefano Zampini lc = PETSC_TRUE; 138043eeeb2dSStefano Zampini } else { 138143eeeb2dSStefano Zampini cS = vStartB; 138243eeeb2dSStefano Zampini cE = vEndB; 138343eeeb2dSStefano Zampini } 138443eeeb2dSStefano Zampini ierr = PetscSectionSetChart(coordSectionB, cS, cE);CHKERRQ(ierr); 138507b0a1fcSMatthew G Knepley for (v = vStartB; v < vEndB; ++v) { 138607b0a1fcSMatthew G Knepley ierr = PetscSectionSetDof(coordSectionB, v, spaceDim);CHKERRQ(ierr); 138707b0a1fcSMatthew G Knepley ierr = PetscSectionSetFieldDof(coordSectionB, v, 0, spaceDim);CHKERRQ(ierr); 138807b0a1fcSMatthew G Knepley } 138943eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 139043eeeb2dSStefano Zampini PetscInt c; 139143eeeb2dSStefano Zampini 139243eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 139343eeeb2dSStefano Zampini PetscInt dof; 139443eeeb2dSStefano Zampini 139543eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 139643eeeb2dSStefano Zampini ierr = PetscSectionSetDof(coordSectionB, c + cStartB, dof);CHKERRQ(ierr); 139743eeeb2dSStefano Zampini ierr = PetscSectionSetFieldDof(coordSectionB, c + cStartB, 0, dof);CHKERRQ(ierr); 139843eeeb2dSStefano Zampini } 139943eeeb2dSStefano Zampini } 140007b0a1fcSMatthew G Knepley ierr = PetscSectionSetUp(coordSectionB);CHKERRQ(ierr); 140107b0a1fcSMatthew G Knepley ierr = PetscSectionGetStorageSize(coordSectionB, &coordSizeB);CHKERRQ(ierr); 140207b0a1fcSMatthew G Knepley ierr = DMGetCoordinatesLocal(dmA, &coordinatesA);CHKERRQ(ierr); 14038b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &coordinatesB);CHKERRQ(ierr); 140407b0a1fcSMatthew G Knepley ierr = PetscObjectSetName((PetscObject) coordinatesB, "coordinates");CHKERRQ(ierr); 140507b0a1fcSMatthew G Knepley ierr = VecSetSizes(coordinatesB, coordSizeB, PETSC_DETERMINE);CHKERRQ(ierr); 140643eeeb2dSStefano Zampini ierr = VecGetBlockSize(coordinatesA, &d);CHKERRQ(ierr); 140743eeeb2dSStefano Zampini ierr = VecSetBlockSize(coordinatesB, d);CHKERRQ(ierr); 140843eeeb2dSStefano Zampini ierr = VecGetType(coordinatesA, &vtype);CHKERRQ(ierr); 140943eeeb2dSStefano Zampini ierr = VecSetType(coordinatesB, vtype);CHKERRQ(ierr); 141007b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesA, &coordsA);CHKERRQ(ierr); 141107b0a1fcSMatthew G Knepley ierr = VecGetArray(coordinatesB, &coordsB);CHKERRQ(ierr); 141207b0a1fcSMatthew G Knepley for (v = 0; v < vEndB-vStartB; ++v) { 141343eeeb2dSStefano Zampini PetscInt offA, offB; 141443eeeb2dSStefano Zampini 141543eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, v + vStartA, &offA);CHKERRQ(ierr); 141643eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, v + vStartB, &offB);CHKERRQ(ierr); 141707b0a1fcSMatthew G Knepley for (d = 0; d < spaceDim; ++d) { 141843eeeb2dSStefano Zampini coordsB[offB+d] = coordsA[offA+d]; 141943eeeb2dSStefano Zampini } 142043eeeb2dSStefano Zampini } 142143eeeb2dSStefano Zampini if (lc) { /* localized coordinates */ 142243eeeb2dSStefano Zampini PetscInt c; 142343eeeb2dSStefano Zampini 142443eeeb2dSStefano Zampini for (c = cS-cStartB; c < cEndB-cStartB; c++) { 142543eeeb2dSStefano Zampini PetscInt dof, offA, offB; 142643eeeb2dSStefano Zampini 142743eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionA, c + cStartA, &offA);CHKERRQ(ierr); 142843eeeb2dSStefano Zampini ierr = PetscSectionGetOffset(coordSectionB, c + cStartB, &offB);CHKERRQ(ierr); 142943eeeb2dSStefano Zampini ierr = PetscSectionGetDof(coordSectionA, c + cStartA, &dof);CHKERRQ(ierr); 1430580bdb30SBarry Smith ierr = PetscArraycpy(coordsB + offB,coordsA + offA,dof);CHKERRQ(ierr); 143107b0a1fcSMatthew G Knepley } 143207b0a1fcSMatthew G Knepley } 143307b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesA, &coordsA);CHKERRQ(ierr); 143407b0a1fcSMatthew G Knepley ierr = VecRestoreArray(coordinatesB, &coordsB);CHKERRQ(ierr); 143507b0a1fcSMatthew G Knepley ierr = DMSetCoordinatesLocal(dmB, coordinatesB);CHKERRQ(ierr); 143607b0a1fcSMatthew G Knepley ierr = VecDestroy(&coordinatesB);CHKERRQ(ierr); 143707b0a1fcSMatthew G Knepley PetscFunctionReturn(0); 143807b0a1fcSMatthew G Knepley } 14395c386225SMatthew G. Knepley 14404e3744c5SMatthew G. Knepley /*@ 14414e3744c5SMatthew G. Knepley DMPlexUninterpolate - Take in a mesh with all intermediate faces, edges, etc. and return a cell-vertex mesh 14424e3744c5SMatthew G. Knepley 1443d083f849SBarry Smith Collective on dm 14444e3744c5SMatthew G. Knepley 14454e3744c5SMatthew G. Knepley Input Parameter: 14464e3744c5SMatthew G. Knepley . dm - The complete DMPlex object 14474e3744c5SMatthew G. Knepley 14484e3744c5SMatthew G. Knepley Output Parameter: 14494e3744c5SMatthew G. Knepley . dmUnint - The DMPlex object with only cells and vertices 14504e3744c5SMatthew G. Knepley 14514e3744c5SMatthew G. Knepley Level: intermediate 14524e3744c5SMatthew G. Knepley 145395452b02SPatrick Sanan Notes: 145495452b02SPatrick Sanan It does not copy over the coordinates. 145543eeeb2dSStefano Zampini 145643eeeb2dSStefano Zampini .seealso: DMPlexInterpolate(), DMPlexCreateFromCellList(), DMPlexCopyCoordinates() 14574e3744c5SMatthew G. Knepley @*/ 14584e3744c5SMatthew G. Knepley PetscErrorCode DMPlexUninterpolate(DM dm, DM *dmUnint) 14594e3744c5SMatthew G. Knepley { 1460827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 14614e3744c5SMatthew G. Knepley DM udm; 1462c9f63434SStefano Zampini PetscInt dim, vStart, vEnd, cStart, cEnd, cMax, c, maxConeSize = 0, *cone; 14634e3744c5SMatthew G. Knepley PetscErrorCode ierr; 14644e3744c5SMatthew G. Knepley 14654e3744c5SMatthew G. Knepley PetscFunctionBegin; 146643eeeb2dSStefano Zampini PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 146743eeeb2dSStefano Zampini PetscValidPointer(dmUnint, 2); 1468c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1469827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); 1470827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_PARTIAL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 1471827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_NONE || dim <= 1) { 1472827c4036SVaclav Hapla /* in case dim <= 1 just keep the DMPLEX_INTERPOLATED_FULL flag */ 14734e3744c5SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) dm);CHKERRQ(ierr); 1474595d4abbSMatthew G. Knepley *dmUnint = dm; 1475595d4abbSMatthew G. Knepley PetscFunctionReturn(0); 14764e3744c5SMatthew G. Knepley } 1477595d4abbSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1478595d4abbSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1479c9f63434SStefano Zampini ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 14804e3744c5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), &udm);CHKERRQ(ierr); 14814e3744c5SMatthew G. Knepley ierr = DMSetType(udm, DMPLEX);CHKERRQ(ierr); 1482c73cfb54SMatthew G. Knepley ierr = DMSetDimension(udm, dim);CHKERRQ(ierr); 14834e3744c5SMatthew G. Knepley ierr = DMPlexSetChart(udm, cStart, vEnd);CHKERRQ(ierr); 14844e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1485595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 14864e3744c5SMatthew G. Knepley 14874e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14884e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 14894e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 14904e3744c5SMatthew G. Knepley 14914e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) ++coneSize; 14924e3744c5SMatthew G. Knepley } 14934e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 14944e3744c5SMatthew G. Knepley ierr = DMPlexSetConeSize(udm, c, coneSize);CHKERRQ(ierr); 1495595d4abbSMatthew G. Knepley maxConeSize = PetscMax(maxConeSize, coneSize); 14964e3744c5SMatthew G. Knepley } 14974e3744c5SMatthew G. Knepley ierr = DMSetUp(udm);CHKERRQ(ierr); 1498785e854fSJed Brown ierr = PetscMalloc1(maxConeSize, &cone);CHKERRQ(ierr); 14994e3744c5SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 1500595d4abbSMatthew G. Knepley PetscInt *closure = NULL, closureSize, cl, coneSize = 0; 15014e3744c5SMatthew G. Knepley 15024e3744c5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15034e3744c5SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 15044e3744c5SMatthew G. Knepley const PetscInt p = closure[cl]; 15054e3744c5SMatthew G. Knepley 15064e3744c5SMatthew G. Knepley if ((p >= vStart) && (p < vEnd)) cone[coneSize++] = p; 15074e3744c5SMatthew G. Knepley } 15084e3744c5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 15094e3744c5SMatthew G. Knepley ierr = DMPlexSetCone(udm, c, cone);CHKERRQ(ierr); 15104e3744c5SMatthew G. Knepley } 15114e3744c5SMatthew G. Knepley ierr = PetscFree(cone);CHKERRQ(ierr); 1512c9f63434SStefano Zampini ierr = DMPlexSetHybridBounds(udm, cMax, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_DETERMINE);CHKERRQ(ierr); 15134e3744c5SMatthew G. Knepley ierr = DMPlexSymmetrize(udm);CHKERRQ(ierr); 15144e3744c5SMatthew G. Knepley ierr = DMPlexStratify(udm);CHKERRQ(ierr); 15155c7de58aSMatthew G. Knepley /* Reduce SF */ 15165c7de58aSMatthew G. Knepley { 15175c7de58aSMatthew G. Knepley PetscSF sfPoint, sfPointUn; 15185c7de58aSMatthew G. Knepley const PetscSFNode *remotePoints; 15195c7de58aSMatthew G. Knepley const PetscInt *localPoints; 15205c7de58aSMatthew G. Knepley PetscSFNode *remotePointsUn; 15215c7de58aSMatthew G. Knepley PetscInt *localPointsUn; 15225c7de58aSMatthew G. Knepley PetscInt vEnd, numRoots, numLeaves, l; 15235c7de58aSMatthew G. Knepley PetscInt numLeavesUn = 0, n = 0; 15245c7de58aSMatthew G. Knepley PetscErrorCode ierr; 15255c7de58aSMatthew G. Knepley 15265c7de58aSMatthew G. Knepley /* Get original SF information */ 15275c7de58aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 15285c7de58aSMatthew G. Knepley ierr = DMGetPointSF(udm, &sfPointUn);CHKERRQ(ierr); 15295c7de58aSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, NULL, &vEnd);CHKERRQ(ierr); 15305c7de58aSMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 15315c7de58aSMatthew G. Knepley /* Allocate space for cells and vertices */ 15325c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; ++l) if (localPoints[l] < vEnd) numLeavesUn++; 15335c7de58aSMatthew G. Knepley /* Fill in leaves */ 15345c7de58aSMatthew G. Knepley if (vEnd >= 0) { 15355c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &remotePointsUn);CHKERRQ(ierr); 15365c7de58aSMatthew G. Knepley ierr = PetscMalloc1(numLeavesUn, &localPointsUn);CHKERRQ(ierr); 15375c7de58aSMatthew G. Knepley for (l = 0; l < numLeaves; l++) { 15385c7de58aSMatthew G. Knepley if (localPoints[l] < vEnd) { 15395c7de58aSMatthew G. Knepley localPointsUn[n] = localPoints[l]; 15405c7de58aSMatthew G. Knepley remotePointsUn[n].rank = remotePoints[l].rank; 15415c7de58aSMatthew G. Knepley remotePointsUn[n].index = remotePoints[l].index; 15425c7de58aSMatthew G. Knepley ++n; 15435c7de58aSMatthew G. Knepley } 15445c7de58aSMatthew G. Knepley } 15455c7de58aSMatthew G. Knepley if (n != numLeavesUn) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Inconsistent number of leaves %d != %d", n, numLeavesUn); 15465c7de58aSMatthew G. Knepley ierr = PetscSFSetGraph(sfPointUn, vEnd, numLeavesUn, localPointsUn, PETSC_OWN_POINTER, remotePointsUn, PETSC_OWN_POINTER);CHKERRQ(ierr); 15475c7de58aSMatthew G. Knepley } 15485c7de58aSMatthew G. Knepley } 154943eeeb2dSStefano Zampini { 155043eeeb2dSStefano Zampini PetscBool isper; 155143eeeb2dSStefano Zampini const PetscReal *maxCell, *L; 155243eeeb2dSStefano Zampini const DMBoundaryType *bd; 155343eeeb2dSStefano Zampini 155443eeeb2dSStefano Zampini ierr = DMGetPeriodicity(dm,&isper,&maxCell,&L,&bd);CHKERRQ(ierr); 155543eeeb2dSStefano Zampini ierr = DMSetPeriodicity(udm,isper,maxCell,L,bd);CHKERRQ(ierr); 155643eeeb2dSStefano Zampini } 1557827c4036SVaclav Hapla /* This function makes the mesh fully uninterpolated on all ranks */ 1558827c4036SVaclav Hapla { 1559827c4036SVaclav Hapla DM_Plex *plex = (DM_Plex *) dm->data; 1560827c4036SVaclav Hapla plex->interpolated = plex->interpolatedCollective = DMPLEX_INTERPOLATED_NONE; 1561827c4036SVaclav Hapla } 15624e3744c5SMatthew G. Knepley *dmUnint = udm; 15634e3744c5SMatthew G. Knepley PetscFunctionReturn(0); 15644e3744c5SMatthew G. Knepley } 1565a7748839SVaclav Hapla 1566a7748839SVaclav Hapla static PetscErrorCode DMPlexIsInterpolated_Internal(DM dm, DMPlexInterpolatedFlag *interpolated) 1567a7748839SVaclav Hapla { 1568a7748839SVaclav Hapla PetscInt coneSize, depth, dim, h, p, pStart, pEnd; 1569a7748839SVaclav Hapla MPI_Comm comm; 1570a7748839SVaclav Hapla PetscErrorCode ierr; 1571a7748839SVaclav Hapla 1572a7748839SVaclav Hapla PetscFunctionBegin; 1573a7748839SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1574a7748839SVaclav Hapla ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1575a7748839SVaclav Hapla ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1576a7748839SVaclav Hapla 1577a7748839SVaclav Hapla if (depth == dim) { 1578a7748839SVaclav Hapla *interpolated = DMPLEX_INTERPOLATED_FULL; 1579a7748839SVaclav Hapla if (!dim) goto finish; 1580a7748839SVaclav Hapla 1581a7748839SVaclav Hapla /* Check points at height = dim are vertices (have no cones) */ 1582a7748839SVaclav Hapla ierr = DMPlexGetHeightStratum(dm, dim, &pStart, &pEnd);CHKERRQ(ierr); 1583a7748839SVaclav Hapla for (p=pStart; p<pEnd; p++) { 1584a7748839SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 1585a7748839SVaclav Hapla if (coneSize) { 1586a7748839SVaclav Hapla *interpolated = DMPLEX_INTERPOLATED_PARTIAL; 1587a7748839SVaclav Hapla goto finish; 1588a7748839SVaclav Hapla } 1589a7748839SVaclav Hapla } 1590a7748839SVaclav Hapla 1591a7748839SVaclav Hapla /* Check points at height < dim have cones */ 1592a7748839SVaclav Hapla for (h=0; h<dim; h++) { 1593a7748839SVaclav Hapla ierr = DMPlexGetHeightStratum(dm, h, &pStart, &pEnd);CHKERRQ(ierr); 1594a7748839SVaclav Hapla for (p=pStart; p<pEnd; p++) { 1595a7748839SVaclav Hapla ierr = DMPlexGetConeSize(dm, p, &coneSize);CHKERRQ(ierr); 1596a7748839SVaclav Hapla if (!coneSize) { 1597a7748839SVaclav Hapla *interpolated = DMPLEX_INTERPOLATED_PARTIAL; 1598a7748839SVaclav Hapla goto finish; 1599a7748839SVaclav Hapla } 1600a7748839SVaclav Hapla } 1601a7748839SVaclav Hapla } 1602a7748839SVaclav Hapla } else if (depth == 1) { 1603a7748839SVaclav Hapla *interpolated = DMPLEX_INTERPOLATED_NONE; 1604a7748839SVaclav Hapla } else { 1605a7748839SVaclav Hapla *interpolated = DMPLEX_INTERPOLATED_PARTIAL; 1606a7748839SVaclav Hapla } 1607a7748839SVaclav Hapla finish: 1608a7748839SVaclav Hapla PetscFunctionReturn(0); 1609a7748839SVaclav Hapla } 1610a7748839SVaclav Hapla 1611a7748839SVaclav Hapla /*@ 1612a7748839SVaclav Hapla DMPlexIsInterpolated - Find out whether this DM is interpolated, i.e. number of strata is equal to dimension. 1613a7748839SVaclav Hapla 1614a7748839SVaclav Hapla Not Collective 1615a7748839SVaclav Hapla 1616a7748839SVaclav Hapla Input Parameter: 1617a7748839SVaclav Hapla . dm - The DM object 1618a7748839SVaclav Hapla 1619a7748839SVaclav Hapla Output Parameter: 1620a7748839SVaclav Hapla . interpolated - Flag whether the DM is interpolated 1621a7748839SVaclav Hapla 1622a7748839SVaclav Hapla Level: intermediate 1623a7748839SVaclav Hapla 1624a7748839SVaclav Hapla Notes: 1625a7748839SVaclav Hapla This is NOT collective so the results can be different on different ranks in special cases. 1626a7748839SVaclav Hapla However, DMPlexInterpolate() guarantees the result is the same on all. 1627a7748839SVaclav Hapla Unlike DMPlexIsInterpolatedCollective(), this cannot return DMPLEX_INTERPOLATED_MIXED. 1628a7748839SVaclav Hapla 1629a7748839SVaclav Hapla .seealso: DMPlexInterpolate(), DMPlexIsInterpolatedCollective() 1630a7748839SVaclav Hapla @*/ 1631a7748839SVaclav Hapla PetscErrorCode DMPlexIsInterpolated(DM dm, DMPlexInterpolatedFlag *interpolated) 1632a7748839SVaclav Hapla { 1633a7748839SVaclav Hapla DM_Plex *plex = (DM_Plex *) dm->data; 1634a7748839SVaclav Hapla PetscErrorCode ierr; 1635a7748839SVaclav Hapla 1636a7748839SVaclav Hapla PetscFunctionBegin; 1637a7748839SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1638a7748839SVaclav Hapla PetscValidPointer(interpolated,2); 1639a7748839SVaclav Hapla if (plex->interpolated < 0) { 1640a7748839SVaclav Hapla ierr = DMPlexIsInterpolated_Internal(dm, &plex->interpolated);CHKERRQ(ierr); 1641a7748839SVaclav Hapla } else { 1642a7748839SVaclav Hapla #if defined (PETSC_USE_DEBUG) 1643a7748839SVaclav Hapla DMPlexInterpolatedFlag flg; 1644a7748839SVaclav Hapla 1645a7748839SVaclav Hapla ierr = DMPlexIsInterpolated_Internal(dm, &flg);CHKERRQ(ierr); 1646a7748839SVaclav Hapla if (flg != plex->interpolated) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "stashed DMPlexInterpolatedFlag is inconsistent"); 1647a7748839SVaclav Hapla #endif 1648a7748839SVaclav Hapla } 1649a7748839SVaclav Hapla *interpolated = plex->interpolated; 1650a7748839SVaclav Hapla PetscFunctionReturn(0); 1651a7748839SVaclav Hapla } 1652a7748839SVaclav Hapla 1653a7748839SVaclav Hapla /*@ 1654a7748839SVaclav Hapla DMPlexIsInterpolatedCollective - Find out whether this DM is interpolated, i.e. number of strata is equal to dimension. 1655a7748839SVaclav Hapla 16562666ff3cSVaclav Hapla Collective 1657a7748839SVaclav Hapla 1658a7748839SVaclav Hapla Input Parameter: 1659a7748839SVaclav Hapla . dm - The DM object 1660a7748839SVaclav Hapla 1661a7748839SVaclav Hapla Output Parameter: 1662a7748839SVaclav Hapla . interpolated - Flag whether the DM is interpolated 1663a7748839SVaclav Hapla 1664a7748839SVaclav Hapla Level: intermediate 1665a7748839SVaclav Hapla 1666a7748839SVaclav Hapla Notes: 1667a7748839SVaclav Hapla This is collective so the results are always guaranteed to be the same on all ranks. 1668a7748839SVaclav Hapla Unlike DMPlexIsInterpolated(), this will return DMPLEX_INTERPOLATED_MIXED if the results of DMPlexIsInterpolated() are different on different ranks. 1669a7748839SVaclav Hapla 1670a7748839SVaclav Hapla .seealso: DMPlexInterpolate(), DMPlexIsInterpolated() 1671a7748839SVaclav Hapla @*/ 1672a7748839SVaclav Hapla PetscErrorCode DMPlexIsInterpolatedCollective(DM dm, DMPlexInterpolatedFlag *interpolated) 1673a7748839SVaclav Hapla { 1674a7748839SVaclav Hapla DM_Plex *plex = (DM_Plex *) dm->data; 1675a7748839SVaclav Hapla PetscBool debug=PETSC_FALSE; 1676a7748839SVaclav Hapla PetscErrorCode ierr; 1677a7748839SVaclav Hapla 1678a7748839SVaclav Hapla PetscFunctionBegin; 1679a7748839SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1680a7748839SVaclav Hapla PetscValidPointer(interpolated,2); 1681a7748839SVaclav Hapla ierr = PetscOptionsGetBool(((PetscObject) dm)->options, ((PetscObject) dm)->prefix, "-dm_plex_is_interpolated_collective_debug", &debug, NULL);CHKERRQ(ierr); 1682a7748839SVaclav Hapla if (plex->interpolatedCollective < 0) { 1683a7748839SVaclav Hapla DMPlexInterpolatedFlag min, max; 1684a7748839SVaclav Hapla MPI_Comm comm; 1685a7748839SVaclav Hapla 1686a7748839SVaclav Hapla ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 1687a7748839SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &plex->interpolatedCollective);CHKERRQ(ierr); 1688a7748839SVaclav Hapla ierr = MPI_Allreduce(&plex->interpolatedCollective, &min, 1, MPIU_ENUM, MPI_MIN, comm);CHKERRQ(ierr); 1689a7748839SVaclav Hapla ierr = MPI_Allreduce(&plex->interpolatedCollective, &max, 1, MPIU_ENUM, MPI_MAX, comm);CHKERRQ(ierr); 1690a7748839SVaclav Hapla if (min != max) plex->interpolatedCollective = DMPLEX_INTERPOLATED_MIXED; 1691a7748839SVaclav Hapla if (debug) { 1692a7748839SVaclav Hapla PetscMPIInt rank; 1693a7748839SVaclav Hapla 1694a7748839SVaclav Hapla ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 1695a7748839SVaclav Hapla ierr = PetscSynchronizedPrintf(comm, "[%d] interpolated=%s interpolatedCollective=%s\n", rank, DMPlexInterpolatedFlags[plex->interpolated], DMPlexInterpolatedFlags[plex->interpolatedCollective]);CHKERRQ(ierr); 1696a7748839SVaclav Hapla ierr = PetscSynchronizedFlush(comm, PETSC_STDOUT);CHKERRQ(ierr); 1697a7748839SVaclav Hapla } 1698a7748839SVaclav Hapla } 1699a7748839SVaclav Hapla *interpolated = plex->interpolatedCollective; 1700a7748839SVaclav Hapla PetscFunctionReturn(0); 1701a7748839SVaclav Hapla } 1702