120282da2SJoe Wallwork #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 220282da2SJoe Wallwork #include <petscblaslapack.h> 320282da2SJoe Wallwork 4fe902aceSJoe Wallwork PetscLogEvent DMPLEX_MetricEnforceSPD, DMPLEX_MetricNormalize, DMPLEX_MetricAverage, DMPLEX_MetricIntersection; 5fe902aceSJoe Wallwork 6d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetFromOptions(DM dm) 7d71ae5a4SJacob Faibussowitsch { 8bc00d7afSJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 931b70465SJoe Wallwork MPI_Comm comm; 1093520041SJoe Wallwork PetscBool isotropic = PETSC_FALSE, uniform = PETSC_FALSE, restrictAnisotropyFirst = PETSC_FALSE; 1176f360caSJoe Wallwork PetscBool noInsert = PETSC_FALSE, noSwap = PETSC_FALSE, noMove = PETSC_FALSE, noSurf = PETSC_FALSE; 12cc2eee55SJoe Wallwork PetscInt verbosity = -1, numIter = 3; 13ae8b063eSJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 1.0e+05, p = 1.0, target = 1000.0, beta = 1.3, hausd = 0.01; 1431b70465SJoe Wallwork 1531b70465SJoe Wallwork PetscFunctionBegin; 16bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(PetscNew(&plex->metricCtx)); 179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 18d0609cedSBarry Smith PetscOptionsBegin(comm, "", "Riemannian metric options", "DMPlexMetric"); 199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_isotropic", "Is the metric isotropic?", "DMPlexMetricCreateIsotropic", isotropic, &isotropic, NULL)); 209566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetIsotropic(dm, isotropic)); 219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_uniform", "Is the metric uniform?", "DMPlexMetricCreateUniform", uniform, &uniform, NULL)); 229566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetUniform(dm, uniform)); 239566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_restrict_anisotropy_first", "Should anisotropy be restricted before normalization?", "DMPlexNormalize", restrictAnisotropyFirst, &restrictAnisotropyFirst, NULL)); 249566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetRestrictAnisotropyFirst(dm, restrictAnisotropyFirst)); 259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_insert", "Turn off node insertion and deletion", "DMAdaptMetric", noInsert, &noInsert, NULL)); 269566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoInsertion(dm, noInsert)); 279566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_swap", "Turn off facet swapping", "DMAdaptMetric", noSwap, &noSwap, NULL)); 289566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoSwapping(dm, noSwap)); 299566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_move", "Turn off facet node movement", "DMAdaptMetric", noMove, &noMove, NULL)); 309566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoMovement(dm, noMove)); 319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_plex_metric_no_surf", "Turn off surface modification", "DMAdaptMetric", noSurf, &noSurf, NULL)); 329566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNoSurf(dm, noSurf)); 339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-dm_plex_metric_num_iterations", "Number of ParMmg adaptation iterations", "DMAdaptMetric", numIter, &numIter, NULL, 0)); 349566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNumIterations(dm, numIter)); 359566063dSJacob Faibussowitsch PetscCall(PetscOptionsRangeInt("-dm_plex_metric_verbosity", "Verbosity of metric-based mesh adaptation package (-1 = silent, 10 = maximum)", "DMAdaptMetric", verbosity, &verbosity, NULL, -1, 10)); 369566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetVerbosity(dm, verbosity)); 379566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_h_min", "Minimum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_min, &h_min, NULL)); 389566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMinimumMagnitude(dm, h_min)); 399566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_h_max", "Maximum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_max, &h_max, NULL)); 409566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMaximumMagnitude(dm, h_max)); 419566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_a_max", "Maximum tolerated anisotropy", "DMPlexMetricEnforceSPD", a_max, &a_max, NULL)); 429566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetMaximumAnisotropy(dm, a_max)); 439566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_p", "L-p normalization order", "DMPlexMetricNormalize", p, &p, NULL)); 449566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetNormalizationOrder(dm, p)); 459566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_target_complexity", "Target metric complexity", "DMPlexMetricNormalize", target, &target, NULL)); 469566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetTargetComplexity(dm, target)); 479566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_gradation_factor", "Metric gradation factor", "DMAdaptMetric", beta, &beta, NULL)); 489566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetGradationFactor(dm, beta)); 499566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-dm_plex_metric_hausdorff_number", "Metric Hausdorff number", "DMAdaptMetric", hausd, &hausd, NULL)); 509566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetHausdorffNumber(dm, hausd)); 51d0609cedSBarry Smith PetscOptionsEnd(); 52*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5331b70465SJoe Wallwork } 5431b70465SJoe Wallwork 55cb7bfe8cSJoe Wallwork /*@ 5631b70465SJoe Wallwork DMPlexMetricSetIsotropic - Record whether a metric is isotropic 5731b70465SJoe Wallwork 5831b70465SJoe Wallwork Input parameters: 5931b70465SJoe Wallwork + dm - The DM 6031b70465SJoe Wallwork - isotropic - Is the metric isotropic? 6131b70465SJoe Wallwork 6231b70465SJoe Wallwork Level: beginner 6331b70465SJoe Wallwork 64db781477SPatrick Sanan .seealso: `DMPlexMetricIsIsotropic()`, `DMPlexMetricSetUniform()`, `DMPlexMetricSetRestrictAnisotropyFirst()` 65cb7bfe8cSJoe Wallwork @*/ 66d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetIsotropic(DM dm, PetscBool isotropic) 67d71ae5a4SJacob Faibussowitsch { 6831b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 6931b70465SJoe Wallwork 7031b70465SJoe Wallwork PetscFunctionBegin; 71bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 7231b70465SJoe Wallwork plex->metricCtx->isotropic = isotropic; 73*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7431b70465SJoe Wallwork } 7531b70465SJoe Wallwork 76cb7bfe8cSJoe Wallwork /*@ 7793520041SJoe Wallwork DMPlexMetricIsIsotropic - Is a metric isotropic? 7831b70465SJoe Wallwork 7931b70465SJoe Wallwork Input parameters: 8031b70465SJoe Wallwork . dm - The DM 8131b70465SJoe Wallwork 8231b70465SJoe Wallwork Output parameters: 8331b70465SJoe Wallwork . isotropic - Is the metric isotropic? 8431b70465SJoe Wallwork 8531b70465SJoe Wallwork Level: beginner 8631b70465SJoe Wallwork 87db781477SPatrick Sanan .seealso: `DMPlexMetricSetIsotropic()`, `DMPlexMetricIsUniform()`, `DMPlexMetricRestrictAnisotropyFirst()` 88cb7bfe8cSJoe Wallwork @*/ 89d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricIsIsotropic(DM dm, PetscBool *isotropic) 90d71ae5a4SJacob Faibussowitsch { 9131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 9231b70465SJoe Wallwork 9331b70465SJoe Wallwork PetscFunctionBegin; 94bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 9531b70465SJoe Wallwork *isotropic = plex->metricCtx->isotropic; 96*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9731b70465SJoe Wallwork } 9831b70465SJoe Wallwork 99cb7bfe8cSJoe Wallwork /*@ 10093520041SJoe Wallwork DMPlexMetricSetUniform - Record whether a metric is uniform 10193520041SJoe Wallwork 10293520041SJoe Wallwork Input parameters: 10393520041SJoe Wallwork + dm - The DM 10493520041SJoe Wallwork - uniform - Is the metric uniform? 10593520041SJoe Wallwork 10693520041SJoe Wallwork Level: beginner 10793520041SJoe Wallwork 10893520041SJoe Wallwork Notes: 10993520041SJoe Wallwork 11093520041SJoe Wallwork If the metric is specified as uniform then it is assumed to be isotropic, too. 11193520041SJoe Wallwork 112db781477SPatrick Sanan .seealso: `DMPlexMetricIsUniform()`, `DMPlexMetricSetIsotropic()`, `DMPlexMetricSetRestrictAnisotropyFirst()` 11393520041SJoe Wallwork @*/ 114d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetUniform(DM dm, PetscBool uniform) 115d71ae5a4SJacob Faibussowitsch { 11693520041SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 11793520041SJoe Wallwork 11893520041SJoe Wallwork PetscFunctionBegin; 119bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 12093520041SJoe Wallwork plex->metricCtx->uniform = uniform; 12193520041SJoe Wallwork if (uniform) plex->metricCtx->isotropic = uniform; 122*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12393520041SJoe Wallwork } 12493520041SJoe Wallwork 12593520041SJoe Wallwork /*@ 12693520041SJoe Wallwork DMPlexMetricIsUniform - Is a metric uniform? 12793520041SJoe Wallwork 12893520041SJoe Wallwork Input parameters: 12993520041SJoe Wallwork . dm - The DM 13093520041SJoe Wallwork 13193520041SJoe Wallwork Output parameters: 13293520041SJoe Wallwork . uniform - Is the metric uniform? 13393520041SJoe Wallwork 13493520041SJoe Wallwork Level: beginner 13593520041SJoe Wallwork 136db781477SPatrick Sanan .seealso: `DMPlexMetricSetUniform()`, `DMPlexMetricIsIsotropic()`, `DMPlexMetricRestrictAnisotropyFirst()` 13793520041SJoe Wallwork @*/ 138d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricIsUniform(DM dm, PetscBool *uniform) 139d71ae5a4SJacob Faibussowitsch { 14093520041SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 14193520041SJoe Wallwork 14293520041SJoe Wallwork PetscFunctionBegin; 143bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 14493520041SJoe Wallwork *uniform = plex->metricCtx->uniform; 145*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14693520041SJoe Wallwork } 14793520041SJoe Wallwork 14893520041SJoe Wallwork /*@ 14931b70465SJoe Wallwork DMPlexMetricSetRestrictAnisotropyFirst - Record whether anisotropy should be restricted before normalization 15031b70465SJoe Wallwork 15131b70465SJoe Wallwork Input parameters: 15231b70465SJoe Wallwork + dm - The DM 15331b70465SJoe Wallwork - restrictAnisotropyFirst - Should anisotropy be normalized first? 15431b70465SJoe Wallwork 15531b70465SJoe Wallwork Level: beginner 15631b70465SJoe Wallwork 157db781477SPatrick Sanan .seealso: `DMPlexMetricSetIsotropic()`, `DMPlexMetricRestrictAnisotropyFirst()` 158cb7bfe8cSJoe Wallwork @*/ 159d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetRestrictAnisotropyFirst(DM dm, PetscBool restrictAnisotropyFirst) 160d71ae5a4SJacob Faibussowitsch { 16131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 16231b70465SJoe Wallwork 16331b70465SJoe Wallwork PetscFunctionBegin; 164bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 16531b70465SJoe Wallwork plex->metricCtx->restrictAnisotropyFirst = restrictAnisotropyFirst; 166*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16731b70465SJoe Wallwork } 16831b70465SJoe Wallwork 169cb7bfe8cSJoe Wallwork /*@ 17031b70465SJoe Wallwork DMPlexMetricRestrictAnisotropyFirst - Is anisotropy restricted before normalization or after? 17131b70465SJoe Wallwork 17231b70465SJoe Wallwork Input parameters: 17331b70465SJoe Wallwork . dm - The DM 17431b70465SJoe Wallwork 17531b70465SJoe Wallwork Output parameters: 17631b70465SJoe Wallwork . restrictAnisotropyFirst - Is anisotropy be normalized first? 17731b70465SJoe Wallwork 17831b70465SJoe Wallwork Level: beginner 17931b70465SJoe Wallwork 180db781477SPatrick Sanan .seealso: `DMPlexMetricIsIsotropic()`, `DMPlexMetricSetRestrictAnisotropyFirst()` 181cb7bfe8cSJoe Wallwork @*/ 182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricRestrictAnisotropyFirst(DM dm, PetscBool *restrictAnisotropyFirst) 183d71ae5a4SJacob Faibussowitsch { 18431b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 18531b70465SJoe Wallwork 18631b70465SJoe Wallwork PetscFunctionBegin; 187bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 18831b70465SJoe Wallwork *restrictAnisotropyFirst = plex->metricCtx->restrictAnisotropyFirst; 189*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19031b70465SJoe Wallwork } 19131b70465SJoe Wallwork 192cb7bfe8cSJoe Wallwork /*@ 193cc2eee55SJoe Wallwork DMPlexMetricSetNoInsertion - Should node insertion and deletion be turned off? 194cc2eee55SJoe Wallwork 195cc2eee55SJoe Wallwork Input parameters: 196cc2eee55SJoe Wallwork + dm - The DM 197cc2eee55SJoe Wallwork - noInsert - Should node insertion and deletion be turned off? 198cc2eee55SJoe Wallwork 199cc2eee55SJoe Wallwork Level: beginner 200cc2eee55SJoe Wallwork 201cb7bfe8cSJoe Wallwork Notes: 202cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 203cb7bfe8cSJoe Wallwork 204db781477SPatrick Sanan .seealso: `DMPlexMetricNoInsertion()`, `DMPlexMetricSetNoSwapping()`, `DMPlexMetricSetNoMovement()`, `DMPlexMetricSetNoSurf()` 205cb7bfe8cSJoe Wallwork @*/ 206d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNoInsertion(DM dm, PetscBool noInsert) 207d71ae5a4SJacob Faibussowitsch { 208cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 209cc2eee55SJoe Wallwork 210cc2eee55SJoe Wallwork PetscFunctionBegin; 211bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 212cc2eee55SJoe Wallwork plex->metricCtx->noInsert = noInsert; 213*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214cc2eee55SJoe Wallwork } 215cc2eee55SJoe Wallwork 216cb7bfe8cSJoe Wallwork /*@ 217cc2eee55SJoe Wallwork DMPlexMetricNoInsertion - Are node insertion and deletion turned off? 218cc2eee55SJoe Wallwork 219cc2eee55SJoe Wallwork Input parameters: 220cc2eee55SJoe Wallwork . dm - The DM 221cc2eee55SJoe Wallwork 222cc2eee55SJoe Wallwork Output parameters: 223cc2eee55SJoe Wallwork . noInsert - Are node insertion and deletion turned off? 224cc2eee55SJoe Wallwork 225cc2eee55SJoe Wallwork Level: beginner 226cc2eee55SJoe Wallwork 227cb7bfe8cSJoe Wallwork Notes: 228cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 229cb7bfe8cSJoe Wallwork 230db781477SPatrick Sanan .seealso: `DMPlexMetricSetNoInsertion()`, `DMPlexMetricNoSwapping()`, `DMPlexMetricNoMovement()`, `DMPlexMetricNoSurf()` 231cb7bfe8cSJoe Wallwork @*/ 232d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricNoInsertion(DM dm, PetscBool *noInsert) 233d71ae5a4SJacob Faibussowitsch { 234cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 235cc2eee55SJoe Wallwork 236cc2eee55SJoe Wallwork PetscFunctionBegin; 237bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 238cc2eee55SJoe Wallwork *noInsert = plex->metricCtx->noInsert; 239*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 240cc2eee55SJoe Wallwork } 241cc2eee55SJoe Wallwork 242cb7bfe8cSJoe Wallwork /*@ 243cc2eee55SJoe Wallwork DMPlexMetricSetNoSwapping - Should facet swapping be turned off? 244cc2eee55SJoe Wallwork 245cc2eee55SJoe Wallwork Input parameters: 246cc2eee55SJoe Wallwork + dm - The DM 247cc2eee55SJoe Wallwork - noSwap - Should facet swapping be turned off? 248cc2eee55SJoe Wallwork 249cc2eee55SJoe Wallwork Level: beginner 250cc2eee55SJoe Wallwork 251cb7bfe8cSJoe Wallwork Notes: 252cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 253cb7bfe8cSJoe Wallwork 254db781477SPatrick Sanan .seealso: `DMPlexMetricNoSwapping()`, `DMPlexMetricSetNoInsertion()`, `DMPlexMetricSetNoMovement()`, `DMPlexMetricSetNoSurf()` 255cb7bfe8cSJoe Wallwork @*/ 256d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNoSwapping(DM dm, PetscBool noSwap) 257d71ae5a4SJacob Faibussowitsch { 258cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 259cc2eee55SJoe Wallwork 260cc2eee55SJoe Wallwork PetscFunctionBegin; 261bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 262cc2eee55SJoe Wallwork plex->metricCtx->noSwap = noSwap; 263*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 264cc2eee55SJoe Wallwork } 265cc2eee55SJoe Wallwork 266cb7bfe8cSJoe Wallwork /*@ 267cc2eee55SJoe Wallwork DMPlexMetricNoSwapping - Is facet swapping turned off? 268cc2eee55SJoe Wallwork 269cc2eee55SJoe Wallwork Input parameters: 270cc2eee55SJoe Wallwork . dm - The DM 271cc2eee55SJoe Wallwork 272cc2eee55SJoe Wallwork Output parameters: 273cc2eee55SJoe Wallwork . noSwap - Is facet swapping turned off? 274cc2eee55SJoe Wallwork 275cc2eee55SJoe Wallwork Level: beginner 276cc2eee55SJoe Wallwork 277cb7bfe8cSJoe Wallwork Notes: 278cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 279cb7bfe8cSJoe Wallwork 280db781477SPatrick Sanan .seealso: `DMPlexMetricSetNoSwapping()`, `DMPlexMetricNoInsertion()`, `DMPlexMetricNoMovement()`, `DMPlexMetricNoSurf()` 281cb7bfe8cSJoe Wallwork @*/ 282d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricNoSwapping(DM dm, PetscBool *noSwap) 283d71ae5a4SJacob Faibussowitsch { 284cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 285cc2eee55SJoe Wallwork 286cc2eee55SJoe Wallwork PetscFunctionBegin; 287bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 288cc2eee55SJoe Wallwork *noSwap = plex->metricCtx->noSwap; 289*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 290cc2eee55SJoe Wallwork } 291cc2eee55SJoe Wallwork 292cb7bfe8cSJoe Wallwork /*@ 293cc2eee55SJoe Wallwork DMPlexMetricSetNoMovement - Should node movement be turned off? 294cc2eee55SJoe Wallwork 295cc2eee55SJoe Wallwork Input parameters: 296cc2eee55SJoe Wallwork + dm - The DM 297cc2eee55SJoe Wallwork - noMove - Should node movement be turned off? 298cc2eee55SJoe Wallwork 299cc2eee55SJoe Wallwork Level: beginner 300cc2eee55SJoe Wallwork 301cb7bfe8cSJoe Wallwork Notes: 302cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 303cb7bfe8cSJoe Wallwork 304db781477SPatrick Sanan .seealso: `DMPlexMetricNoMovement()`, `DMPlexMetricSetNoInsertion()`, `DMPlexMetricSetNoSwapping()`, `DMPlexMetricSetNoSurf()` 305cb7bfe8cSJoe Wallwork @*/ 306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNoMovement(DM dm, PetscBool noMove) 307d71ae5a4SJacob Faibussowitsch { 308cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 309cc2eee55SJoe Wallwork 310cc2eee55SJoe Wallwork PetscFunctionBegin; 311bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 312cc2eee55SJoe Wallwork plex->metricCtx->noMove = noMove; 313*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 314cc2eee55SJoe Wallwork } 315cc2eee55SJoe Wallwork 316cb7bfe8cSJoe Wallwork /*@ 317cc2eee55SJoe Wallwork DMPlexMetricNoMovement - Is node movement turned off? 318cc2eee55SJoe Wallwork 319cc2eee55SJoe Wallwork Input parameters: 320cc2eee55SJoe Wallwork . dm - The DM 321cc2eee55SJoe Wallwork 322cc2eee55SJoe Wallwork Output parameters: 323cc2eee55SJoe Wallwork . noMove - Is node movement turned off? 324cc2eee55SJoe Wallwork 325cc2eee55SJoe Wallwork Level: beginner 326cc2eee55SJoe Wallwork 327cb7bfe8cSJoe Wallwork Notes: 328cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 329cb7bfe8cSJoe Wallwork 330db781477SPatrick Sanan .seealso: `DMPlexMetricSetNoMovement()`, `DMPlexMetricNoInsertion()`, `DMPlexMetricNoSwapping()`, `DMPlexMetricNoSurf()` 331cb7bfe8cSJoe Wallwork @*/ 332d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricNoMovement(DM dm, PetscBool *noMove) 333d71ae5a4SJacob Faibussowitsch { 334cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 335cc2eee55SJoe Wallwork 336cc2eee55SJoe Wallwork PetscFunctionBegin; 337bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 338cc2eee55SJoe Wallwork *noMove = plex->metricCtx->noMove; 339*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 340cc2eee55SJoe Wallwork } 341cc2eee55SJoe Wallwork 342cb7bfe8cSJoe Wallwork /*@ 34376f360caSJoe Wallwork DMPlexMetricSetNoSurf - Should surface modification be turned off? 34476f360caSJoe Wallwork 34576f360caSJoe Wallwork Input parameters: 34676f360caSJoe Wallwork + dm - The DM 34776f360caSJoe Wallwork - noSurf - Should surface modification be turned off? 34876f360caSJoe Wallwork 34976f360caSJoe Wallwork Level: beginner 35076f360caSJoe Wallwork 35176f360caSJoe Wallwork Notes: 35276f360caSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 35376f360caSJoe Wallwork 354db781477SPatrick Sanan .seealso: `DMPlexMetricNoSurf()`, `DMPlexMetricSetNoMovement()`, `DMPlexMetricSetNoInsertion()`, `DMPlexMetricSetNoSwapping()` 35576f360caSJoe Wallwork @*/ 356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNoSurf(DM dm, PetscBool noSurf) 357d71ae5a4SJacob Faibussowitsch { 35876f360caSJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 35976f360caSJoe Wallwork 36076f360caSJoe Wallwork PetscFunctionBegin; 361bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 36276f360caSJoe Wallwork plex->metricCtx->noSurf = noSurf; 363*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36476f360caSJoe Wallwork } 36576f360caSJoe Wallwork 36676f360caSJoe Wallwork /*@ 36776f360caSJoe Wallwork DMPlexMetricNoSurf - Is surface modification turned off? 36876f360caSJoe Wallwork 36976f360caSJoe Wallwork Input parameters: 37076f360caSJoe Wallwork . dm - The DM 37176f360caSJoe Wallwork 37276f360caSJoe Wallwork Output parameters: 37376f360caSJoe Wallwork . noSurf - Is surface modification turned off? 37476f360caSJoe Wallwork 37576f360caSJoe Wallwork Level: beginner 37676f360caSJoe Wallwork 37776f360caSJoe Wallwork Notes: 37876f360caSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 37976f360caSJoe Wallwork 380db781477SPatrick Sanan .seealso: `DMPlexMetricSetNoSurf()`, `DMPlexMetricNoMovement()`, `DMPlexMetricNoInsertion()`, `DMPlexMetricNoSwapping()` 38176f360caSJoe Wallwork @*/ 382d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricNoSurf(DM dm, PetscBool *noSurf) 383d71ae5a4SJacob Faibussowitsch { 38476f360caSJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 38576f360caSJoe Wallwork 38676f360caSJoe Wallwork PetscFunctionBegin; 387bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 38876f360caSJoe Wallwork *noSurf = plex->metricCtx->noSurf; 389*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39076f360caSJoe Wallwork } 39176f360caSJoe Wallwork 39276f360caSJoe Wallwork /*@ 39331b70465SJoe Wallwork DMPlexMetricSetMinimumMagnitude - Set the minimum tolerated metric magnitude 39431b70465SJoe Wallwork 39531b70465SJoe Wallwork Input parameters: 39631b70465SJoe Wallwork + dm - The DM 39731b70465SJoe Wallwork - h_min - The minimum tolerated metric magnitude 39831b70465SJoe Wallwork 39931b70465SJoe Wallwork Level: beginner 40031b70465SJoe Wallwork 401db781477SPatrick Sanan .seealso: `DMPlexMetricGetMinimumMagnitude()`, `DMPlexMetricSetMaximumMagnitude()` 402cb7bfe8cSJoe Wallwork @*/ 403d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetMinimumMagnitude(DM dm, PetscReal h_min) 404d71ae5a4SJacob Faibussowitsch { 40531b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 40631b70465SJoe Wallwork 40731b70465SJoe Wallwork PetscFunctionBegin; 408bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 409bc00d7afSJoe Wallwork PetscCheck(h_min > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric magnitudes must be in (0, inf)"); 41031b70465SJoe Wallwork plex->metricCtx->h_min = h_min; 411*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41231b70465SJoe Wallwork } 41331b70465SJoe Wallwork 414cb7bfe8cSJoe Wallwork /*@ 41531b70465SJoe Wallwork DMPlexMetricGetMinimumMagnitude - Get the minimum tolerated metric magnitude 41631b70465SJoe Wallwork 41731b70465SJoe Wallwork Input parameters: 41831b70465SJoe Wallwork . dm - The DM 41931b70465SJoe Wallwork 420cc2eee55SJoe Wallwork Output parameters: 42131b70465SJoe Wallwork . h_min - The minimum tolerated metric magnitude 42231b70465SJoe Wallwork 42331b70465SJoe Wallwork Level: beginner 42431b70465SJoe Wallwork 425db781477SPatrick Sanan .seealso: `DMPlexMetricSetMinimumMagnitude()`, `DMPlexMetricGetMaximumMagnitude()` 426cb7bfe8cSJoe Wallwork @*/ 427d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetMinimumMagnitude(DM dm, PetscReal *h_min) 428d71ae5a4SJacob Faibussowitsch { 42931b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 43031b70465SJoe Wallwork 43131b70465SJoe Wallwork PetscFunctionBegin; 432bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 43331b70465SJoe Wallwork *h_min = plex->metricCtx->h_min; 434*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43531b70465SJoe Wallwork } 43631b70465SJoe Wallwork 437cb7bfe8cSJoe Wallwork /*@ 43831b70465SJoe Wallwork DMPlexMetricSetMaximumMagnitude - Set the maximum tolerated metric magnitude 43931b70465SJoe Wallwork 44031b70465SJoe Wallwork Input parameters: 44131b70465SJoe Wallwork + dm - The DM 44231b70465SJoe Wallwork - h_max - The maximum tolerated metric magnitude 44331b70465SJoe Wallwork 44431b70465SJoe Wallwork Level: beginner 44531b70465SJoe Wallwork 446db781477SPatrick Sanan .seealso: `DMPlexMetricGetMaximumMagnitude()`, `DMPlexMetricSetMinimumMagnitude()` 447cb7bfe8cSJoe Wallwork @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetMaximumMagnitude(DM dm, PetscReal h_max) 449d71ae5a4SJacob Faibussowitsch { 45031b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 45131b70465SJoe Wallwork 45231b70465SJoe Wallwork PetscFunctionBegin; 453bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 454bc00d7afSJoe Wallwork PetscCheck(h_max > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric magnitudes must be in (0, inf)"); 45531b70465SJoe Wallwork plex->metricCtx->h_max = h_max; 456*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45731b70465SJoe Wallwork } 45831b70465SJoe Wallwork 459cb7bfe8cSJoe Wallwork /*@ 46031b70465SJoe Wallwork DMPlexMetricGetMaximumMagnitude - Get the maximum tolerated metric magnitude 46131b70465SJoe Wallwork 46231b70465SJoe Wallwork Input parameters: 46331b70465SJoe Wallwork . dm - The DM 46431b70465SJoe Wallwork 465cc2eee55SJoe Wallwork Output parameters: 46631b70465SJoe Wallwork . h_max - The maximum tolerated metric magnitude 46731b70465SJoe Wallwork 46831b70465SJoe Wallwork Level: beginner 46931b70465SJoe Wallwork 470db781477SPatrick Sanan .seealso: `DMPlexMetricSetMaximumMagnitude()`, `DMPlexMetricGetMinimumMagnitude()` 471cb7bfe8cSJoe Wallwork @*/ 472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetMaximumMagnitude(DM dm, PetscReal *h_max) 473d71ae5a4SJacob Faibussowitsch { 47431b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 47531b70465SJoe Wallwork 47631b70465SJoe Wallwork PetscFunctionBegin; 477bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 47831b70465SJoe Wallwork *h_max = plex->metricCtx->h_max; 479*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48031b70465SJoe Wallwork } 48131b70465SJoe Wallwork 482cb7bfe8cSJoe Wallwork /*@ 48331b70465SJoe Wallwork DMPlexMetricSetMaximumAnisotropy - Set the maximum tolerated metric anisotropy 48431b70465SJoe Wallwork 48531b70465SJoe Wallwork Input parameters: 48631b70465SJoe Wallwork + dm - The DM 48731b70465SJoe Wallwork - a_max - The maximum tolerated metric anisotropy 48831b70465SJoe Wallwork 48931b70465SJoe Wallwork Level: beginner 49031b70465SJoe Wallwork 49131b70465SJoe Wallwork Note: If the value zero is given then anisotropy will not be restricted. Otherwise, it should be at least one. 49231b70465SJoe Wallwork 493db781477SPatrick Sanan .seealso: `DMPlexMetricGetMaximumAnisotropy()`, `DMPlexMetricSetMaximumMagnitude()` 494cb7bfe8cSJoe Wallwork @*/ 495d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetMaximumAnisotropy(DM dm, PetscReal a_max) 496d71ae5a4SJacob Faibussowitsch { 49731b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 49831b70465SJoe Wallwork 49931b70465SJoe Wallwork PetscFunctionBegin; 500bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 501bc00d7afSJoe Wallwork PetscCheck(a_max >= 1.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Anisotropy must be in [1, inf)"); 50231b70465SJoe Wallwork plex->metricCtx->a_max = a_max; 503*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50431b70465SJoe Wallwork } 50531b70465SJoe Wallwork 506cb7bfe8cSJoe Wallwork /*@ 50731b70465SJoe Wallwork DMPlexMetricGetMaximumAnisotropy - Get the maximum tolerated metric anisotropy 50831b70465SJoe Wallwork 50931b70465SJoe Wallwork Input parameters: 51031b70465SJoe Wallwork . dm - The DM 51131b70465SJoe Wallwork 512cc2eee55SJoe Wallwork Output parameters: 51331b70465SJoe Wallwork . a_max - The maximum tolerated metric anisotropy 51431b70465SJoe Wallwork 51531b70465SJoe Wallwork Level: beginner 51631b70465SJoe Wallwork 517db781477SPatrick Sanan .seealso: `DMPlexMetricSetMaximumAnisotropy()`, `DMPlexMetricGetMaximumMagnitude()` 518cb7bfe8cSJoe Wallwork @*/ 519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetMaximumAnisotropy(DM dm, PetscReal *a_max) 520d71ae5a4SJacob Faibussowitsch { 52131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 52231b70465SJoe Wallwork 52331b70465SJoe Wallwork PetscFunctionBegin; 524bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 52531b70465SJoe Wallwork *a_max = plex->metricCtx->a_max; 526*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52731b70465SJoe Wallwork } 52831b70465SJoe Wallwork 529cb7bfe8cSJoe Wallwork /*@ 53031b70465SJoe Wallwork DMPlexMetricSetTargetComplexity - Set the target metric complexity 53131b70465SJoe Wallwork 53231b70465SJoe Wallwork Input parameters: 53331b70465SJoe Wallwork + dm - The DM 53431b70465SJoe Wallwork - targetComplexity - The target metric complexity 53531b70465SJoe Wallwork 53631b70465SJoe Wallwork Level: beginner 53731b70465SJoe Wallwork 538db781477SPatrick Sanan .seealso: `DMPlexMetricGetTargetComplexity()`, `DMPlexMetricSetNormalizationOrder()` 539cb7bfe8cSJoe Wallwork @*/ 540d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetTargetComplexity(DM dm, PetscReal targetComplexity) 541d71ae5a4SJacob Faibussowitsch { 54231b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 54331b70465SJoe Wallwork 54431b70465SJoe Wallwork PetscFunctionBegin; 545bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 546bc00d7afSJoe Wallwork PetscCheck(targetComplexity > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric complexity must be in (0, inf)"); 54731b70465SJoe Wallwork plex->metricCtx->targetComplexity = targetComplexity; 548*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54931b70465SJoe Wallwork } 55031b70465SJoe Wallwork 551cb7bfe8cSJoe Wallwork /*@ 55231b70465SJoe Wallwork DMPlexMetricGetTargetComplexity - Get the target metric complexity 55331b70465SJoe Wallwork 55431b70465SJoe Wallwork Input parameters: 55531b70465SJoe Wallwork . dm - The DM 55631b70465SJoe Wallwork 557cc2eee55SJoe Wallwork Output parameters: 55831b70465SJoe Wallwork . targetComplexity - The target metric complexity 55931b70465SJoe Wallwork 56031b70465SJoe Wallwork Level: beginner 56131b70465SJoe Wallwork 562db781477SPatrick Sanan .seealso: `DMPlexMetricSetTargetComplexity()`, `DMPlexMetricGetNormalizationOrder()` 563cb7bfe8cSJoe Wallwork @*/ 564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetTargetComplexity(DM dm, PetscReal *targetComplexity) 565d71ae5a4SJacob Faibussowitsch { 56631b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 56731b70465SJoe Wallwork 56831b70465SJoe Wallwork PetscFunctionBegin; 569bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 57031b70465SJoe Wallwork *targetComplexity = plex->metricCtx->targetComplexity; 571*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57231b70465SJoe Wallwork } 57331b70465SJoe Wallwork 574cb7bfe8cSJoe Wallwork /*@ 57531b70465SJoe Wallwork DMPlexMetricSetNormalizationOrder - Set the order p for L-p normalization 57631b70465SJoe Wallwork 57731b70465SJoe Wallwork Input parameters: 57831b70465SJoe Wallwork + dm - The DM 57931b70465SJoe Wallwork - p - The normalization order 58031b70465SJoe Wallwork 58131b70465SJoe Wallwork Level: beginner 58231b70465SJoe Wallwork 583db781477SPatrick Sanan .seealso: `DMPlexMetricGetNormalizationOrder()`, `DMPlexMetricSetTargetComplexity()` 584cb7bfe8cSJoe Wallwork @*/ 585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNormalizationOrder(DM dm, PetscReal p) 586d71ae5a4SJacob Faibussowitsch { 58731b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 58831b70465SJoe Wallwork 58931b70465SJoe Wallwork PetscFunctionBegin; 590bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 591bc00d7afSJoe Wallwork PetscCheck(p >= 1.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Normalization order must be in [1, inf)"); 59231b70465SJoe Wallwork plex->metricCtx->p = p; 593*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59431b70465SJoe Wallwork } 59531b70465SJoe Wallwork 596cb7bfe8cSJoe Wallwork /*@ 59731b70465SJoe Wallwork DMPlexMetricGetNormalizationOrder - Get the order p for L-p normalization 59831b70465SJoe Wallwork 59931b70465SJoe Wallwork Input parameters: 60031b70465SJoe Wallwork . dm - The DM 60131b70465SJoe Wallwork 602cc2eee55SJoe Wallwork Output parameters: 60331b70465SJoe Wallwork . p - The normalization order 60431b70465SJoe Wallwork 60531b70465SJoe Wallwork Level: beginner 60631b70465SJoe Wallwork 607db781477SPatrick Sanan .seealso: `DMPlexMetricSetNormalizationOrder()`, `DMPlexMetricGetTargetComplexity()` 608cb7bfe8cSJoe Wallwork @*/ 609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetNormalizationOrder(DM dm, PetscReal *p) 610d71ae5a4SJacob Faibussowitsch { 61131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 61231b70465SJoe Wallwork 61331b70465SJoe Wallwork PetscFunctionBegin; 614bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 61531b70465SJoe Wallwork *p = plex->metricCtx->p; 616*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61731b70465SJoe Wallwork } 61831b70465SJoe Wallwork 619cb7bfe8cSJoe Wallwork /*@ 620cc2eee55SJoe Wallwork DMPlexMetricSetGradationFactor - Set the metric gradation factor 621cc2eee55SJoe Wallwork 622cc2eee55SJoe Wallwork Input parameters: 623cc2eee55SJoe Wallwork + dm - The DM 624cc2eee55SJoe Wallwork - beta - The metric gradation factor 625cc2eee55SJoe Wallwork 626cc2eee55SJoe Wallwork Level: beginner 627cc2eee55SJoe Wallwork 628cc2eee55SJoe Wallwork Notes: 629cc2eee55SJoe Wallwork 630cc2eee55SJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 631cc2eee55SJoe Wallwork 632cc2eee55SJoe Wallwork Turn off gradation by passing the value -1. Otherwise, pass a positive value. 633cc2eee55SJoe Wallwork 634cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 635cb7bfe8cSJoe Wallwork 636db781477SPatrick Sanan .seealso: `DMPlexMetricGetGradationFactor()`, `DMPlexMetricSetHausdorffNumber()` 637cb7bfe8cSJoe Wallwork @*/ 638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetGradationFactor(DM dm, PetscReal beta) 639d71ae5a4SJacob Faibussowitsch { 640cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 641cc2eee55SJoe Wallwork 642cc2eee55SJoe Wallwork PetscFunctionBegin; 643bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 644bc00d7afSJoe Wallwork PetscCheck(beta > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric gradation factor must be in (0, inf)"); 645cc2eee55SJoe Wallwork plex->metricCtx->gradationFactor = beta; 646*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 647cc2eee55SJoe Wallwork } 648cc2eee55SJoe Wallwork 649cb7bfe8cSJoe Wallwork /*@ 650cc2eee55SJoe Wallwork DMPlexMetricGetGradationFactor - Get the metric gradation factor 651cc2eee55SJoe Wallwork 652cc2eee55SJoe Wallwork Input parameters: 653cc2eee55SJoe Wallwork . dm - The DM 654cc2eee55SJoe Wallwork 655cc2eee55SJoe Wallwork Output parameters: 656cc2eee55SJoe Wallwork . beta - The metric gradation factor 657cc2eee55SJoe Wallwork 658cc2eee55SJoe Wallwork Level: beginner 659cc2eee55SJoe Wallwork 660cb7bfe8cSJoe Wallwork Notes: 661cb7bfe8cSJoe Wallwork 662cb7bfe8cSJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 663cb7bfe8cSJoe Wallwork 664cb7bfe8cSJoe Wallwork The value -1 implies that gradation is turned off. 665cb7bfe8cSJoe Wallwork 666cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 667cc2eee55SJoe Wallwork 668db781477SPatrick Sanan .seealso: `DMPlexMetricSetGradationFactor()`, `DMPlexMetricGetHausdorffNumber()` 669cb7bfe8cSJoe Wallwork @*/ 670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetGradationFactor(DM dm, PetscReal *beta) 671d71ae5a4SJacob Faibussowitsch { 672cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 673cc2eee55SJoe Wallwork 674cc2eee55SJoe Wallwork PetscFunctionBegin; 675bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 676cc2eee55SJoe Wallwork *beta = plex->metricCtx->gradationFactor; 677*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 678cc2eee55SJoe Wallwork } 679cc2eee55SJoe Wallwork 680cb7bfe8cSJoe Wallwork /*@ 681ae8b063eSJoe Wallwork DMPlexMetricSetHausdorffNumber - Set the metric Hausdorff number 682ae8b063eSJoe Wallwork 683ae8b063eSJoe Wallwork Input parameters: 684ae8b063eSJoe Wallwork + dm - The DM 685ae8b063eSJoe Wallwork - hausd - The metric Hausdorff number 686ae8b063eSJoe Wallwork 687ae8b063eSJoe Wallwork Level: beginner 688ae8b063eSJoe Wallwork 689ae8b063eSJoe Wallwork Notes: 690ae8b063eSJoe Wallwork 691ae8b063eSJoe Wallwork The Hausdorff number imposes the maximal distance between the piecewise linear approximation of the 692ae8b063eSJoe Wallwork boundary and the reconstructed ideal boundary. Thus, a low Hausdorff parameter leads to refine the 693ae8b063eSJoe Wallwork high curvature areas. By default, the Hausdorff value is set to 0.01, which is a suitable value for 694ae8b063eSJoe Wallwork an object of size 1 in each direction. For smaller (resp. larger) objects, you may need to decrease 695ae8b063eSJoe Wallwork (resp. increase) the Hausdorff parameter. (Taken from 696ae8b063eSJoe Wallwork https://www.mmgtools.org/mmg-remesher-try-mmg/mmg-remesher-options/mmg-remesher-option-hausd). 697ae8b063eSJoe Wallwork 698ae8b063eSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 699ae8b063eSJoe Wallwork 700db781477SPatrick Sanan .seealso: `DMPlexMetricSetGradationFactor()`, `DMPlexMetricGetHausdorffNumber()` 701ae8b063eSJoe Wallwork @*/ 702d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetHausdorffNumber(DM dm, PetscReal hausd) 703d71ae5a4SJacob Faibussowitsch { 704ae8b063eSJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 705ae8b063eSJoe Wallwork 706ae8b063eSJoe Wallwork PetscFunctionBegin; 707bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 708bc00d7afSJoe Wallwork PetscCheck(hausd > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Metric Hausdorff number must be in (0, inf)"); 709ae8b063eSJoe Wallwork plex->metricCtx->hausdorffNumber = hausd; 710*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 711ae8b063eSJoe Wallwork } 712ae8b063eSJoe Wallwork 713ae8b063eSJoe Wallwork /*@ 714ae8b063eSJoe Wallwork DMPlexMetricGetHausdorffNumber - Get the metric Hausdorff number 715ae8b063eSJoe Wallwork 716ae8b063eSJoe Wallwork Input parameters: 717ae8b063eSJoe Wallwork . dm - The DM 718ae8b063eSJoe Wallwork 719ae8b063eSJoe Wallwork Output parameters: 720ae8b063eSJoe Wallwork . hausd - The metric Hausdorff number 721ae8b063eSJoe Wallwork 722ae8b063eSJoe Wallwork Level: beginner 723ae8b063eSJoe Wallwork 724ae8b063eSJoe Wallwork Notes: 725ae8b063eSJoe Wallwork 726ae8b063eSJoe Wallwork The Hausdorff number imposes the maximal distance between the piecewise linear approximation of the 727ae8b063eSJoe Wallwork boundary and the reconstructed ideal boundary. Thus, a low Hausdorff parameter leads to refine the 728ae8b063eSJoe Wallwork high curvature areas. By default, the Hausdorff value is set to 0.01, which is a suitable value for 729ae8b063eSJoe Wallwork an object of size 1 in each direction. For smaller (resp. larger) objects, you may need to decrease 730ae8b063eSJoe Wallwork (resp. increase) the Hausdorff parameter. (Taken from 731ae8b063eSJoe Wallwork https://www.mmgtools.org/mmg-remesher-try-mmg/mmg-remesher-options/mmg-remesher-option-hausd). 732ae8b063eSJoe Wallwork 733ae8b063eSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 734ae8b063eSJoe Wallwork 735db781477SPatrick Sanan .seealso: `DMPlexMetricGetGradationFactor()`, `DMPlexMetricSetHausdorffNumber()` 736ae8b063eSJoe Wallwork @*/ 737d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetHausdorffNumber(DM dm, PetscReal *hausd) 738d71ae5a4SJacob Faibussowitsch { 739ae8b063eSJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 740ae8b063eSJoe Wallwork 741ae8b063eSJoe Wallwork PetscFunctionBegin; 742bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 743ae8b063eSJoe Wallwork *hausd = plex->metricCtx->hausdorffNumber; 744*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 745ae8b063eSJoe Wallwork } 746ae8b063eSJoe Wallwork 747ae8b063eSJoe Wallwork /*@ 748cc2eee55SJoe Wallwork DMPlexMetricSetVerbosity - Set the verbosity of the mesh adaptation package 749cc2eee55SJoe Wallwork 750cc2eee55SJoe Wallwork Input parameters: 751cc2eee55SJoe Wallwork + dm - The DM 752cc2eee55SJoe Wallwork - verbosity - The verbosity, where -1 is silent and 10 is maximum 753cc2eee55SJoe Wallwork 754cb7bfe8cSJoe Wallwork Level: beginner 755cb7bfe8cSJoe Wallwork 756cb7bfe8cSJoe Wallwork Notes: 757cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 758cb7bfe8cSJoe Wallwork 759db781477SPatrick Sanan .seealso: `DMPlexMetricGetVerbosity()`, `DMPlexMetricSetNumIterations()` 760cb7bfe8cSJoe Wallwork @*/ 761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetVerbosity(DM dm, PetscInt verbosity) 762d71ae5a4SJacob Faibussowitsch { 763cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 764cc2eee55SJoe Wallwork 765cc2eee55SJoe Wallwork PetscFunctionBegin; 766bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 767cc2eee55SJoe Wallwork plex->metricCtx->verbosity = verbosity; 768*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769cc2eee55SJoe Wallwork } 770cc2eee55SJoe Wallwork 771cb7bfe8cSJoe Wallwork /*@ 772cc2eee55SJoe Wallwork DMPlexMetricGetVerbosity - Get the verbosity of the mesh adaptation package 773cc2eee55SJoe Wallwork 774cc2eee55SJoe Wallwork Input parameters: 775cc2eee55SJoe Wallwork . dm - The DM 776cc2eee55SJoe Wallwork 777cc2eee55SJoe Wallwork Output parameters: 778cc2eee55SJoe Wallwork . verbosity - The verbosity, where -1 is silent and 10 is maximum 779cc2eee55SJoe Wallwork 780cb7bfe8cSJoe Wallwork Level: beginner 781cb7bfe8cSJoe Wallwork 782cb7bfe8cSJoe Wallwork Notes: 783cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 784cb7bfe8cSJoe Wallwork 785db781477SPatrick Sanan .seealso: `DMPlexMetricSetVerbosity()`, `DMPlexMetricGetNumIterations()` 786cb7bfe8cSJoe Wallwork @*/ 787d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetVerbosity(DM dm, PetscInt *verbosity) 788d71ae5a4SJacob Faibussowitsch { 789cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 790cc2eee55SJoe Wallwork 791cc2eee55SJoe Wallwork PetscFunctionBegin; 792bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 793cc2eee55SJoe Wallwork *verbosity = plex->metricCtx->verbosity; 794*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 795cc2eee55SJoe Wallwork } 796cc2eee55SJoe Wallwork 797cb7bfe8cSJoe Wallwork /*@ 798cc2eee55SJoe Wallwork DMPlexMetricSetNumIterations - Set the number of parallel adaptation iterations 799cc2eee55SJoe Wallwork 800cc2eee55SJoe Wallwork Input parameters: 801cc2eee55SJoe Wallwork + dm - The DM 802cc2eee55SJoe Wallwork - numIter - the number of parallel adaptation iterations 803cc2eee55SJoe Wallwork 804cb7bfe8cSJoe Wallwork Level: beginner 805cb7bfe8cSJoe Wallwork 806cb7bfe8cSJoe Wallwork Notes: 807cb7bfe8cSJoe Wallwork This is only used by ParMmg (not Pragmatic or Mmg). 808cc2eee55SJoe Wallwork 809db781477SPatrick Sanan .seealso: `DMPlexMetricSetVerbosity()`, `DMPlexMetricGetNumIterations()` 810cb7bfe8cSJoe Wallwork @*/ 811d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricSetNumIterations(DM dm, PetscInt numIter) 812d71ae5a4SJacob Faibussowitsch { 813cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 814cc2eee55SJoe Wallwork 815cc2eee55SJoe Wallwork PetscFunctionBegin; 816bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 817cc2eee55SJoe Wallwork plex->metricCtx->numIter = numIter; 818*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 819cc2eee55SJoe Wallwork } 820cc2eee55SJoe Wallwork 821cb7bfe8cSJoe Wallwork /*@ 822cc2eee55SJoe Wallwork DMPlexMetricGetNumIterations - Get the number of parallel adaptation iterations 823cc2eee55SJoe Wallwork 824cc2eee55SJoe Wallwork Input parameters: 825cc2eee55SJoe Wallwork . dm - The DM 826cc2eee55SJoe Wallwork 827cc2eee55SJoe Wallwork Output parameters: 828cc2eee55SJoe Wallwork . numIter - the number of parallel adaptation iterations 829cc2eee55SJoe Wallwork 830cb7bfe8cSJoe Wallwork Level: beginner 831cb7bfe8cSJoe Wallwork 832cb7bfe8cSJoe Wallwork Notes: 833cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic or Mmg). 834cc2eee55SJoe Wallwork 835db781477SPatrick Sanan .seealso: `DMPlexMetricSetNumIterations()`, `DMPlexMetricGetVerbosity()` 836cb7bfe8cSJoe Wallwork @*/ 837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricGetNumIterations(DM dm, PetscInt *numIter) 838d71ae5a4SJacob Faibussowitsch { 839cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *)dm->data; 840cc2eee55SJoe Wallwork 841cc2eee55SJoe Wallwork PetscFunctionBegin; 842bc00d7afSJoe Wallwork if (!plex->metricCtx) PetscCall(DMPlexMetricSetFromOptions(dm)); 843cc2eee55SJoe Wallwork *numIter = plex->metricCtx->numIter; 844*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 845cc2eee55SJoe Wallwork } 846cc2eee55SJoe Wallwork 847d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexP1FieldCreate_Private(DM dm, PetscInt f, PetscInt size, Vec *metric) 848d71ae5a4SJacob Faibussowitsch { 84920282da2SJoe Wallwork MPI_Comm comm; 85020282da2SJoe Wallwork PetscFE fe; 85120282da2SJoe Wallwork PetscInt dim; 85220282da2SJoe Wallwork 85320282da2SJoe Wallwork PetscFunctionBegin; 85420282da2SJoe Wallwork 85520282da2SJoe Wallwork /* Extract metadata from dm */ 8569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 8579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 85820282da2SJoe Wallwork 85920282da2SJoe Wallwork /* Create a P1 field of the requested size */ 8609566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(comm, dim, size, PETSC_TRUE, 1, PETSC_DETERMINE, &fe)); 8619566063dSJacob Faibussowitsch PetscCall(DMSetField(dm, f, NULL, (PetscObject)fe)); 8629566063dSJacob Faibussowitsch PetscCall(DMCreateDS(dm)); 8639566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 8649566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm, metric)); 86520282da2SJoe Wallwork 866*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86720282da2SJoe Wallwork } 86820282da2SJoe Wallwork 869cb7bfe8cSJoe Wallwork /*@ 87020282da2SJoe Wallwork DMPlexMetricCreate - Create a Riemannian metric field 87120282da2SJoe Wallwork 87220282da2SJoe Wallwork Input parameters: 87320282da2SJoe Wallwork + dm - The DM 87420282da2SJoe Wallwork - f - The field number to use 87520282da2SJoe Wallwork 87620282da2SJoe Wallwork Output parameter: 87720282da2SJoe Wallwork . metric - The metric 87820282da2SJoe Wallwork 87920282da2SJoe Wallwork Level: beginner 88020282da2SJoe Wallwork 88131b70465SJoe Wallwork Notes: 88231b70465SJoe Wallwork 88331b70465SJoe Wallwork It is assumed that the DM is comprised of simplices. 88431b70465SJoe Wallwork 88531b70465SJoe Wallwork Command line options for Riemannian metrics: 88631b70465SJoe Wallwork 887cb7bfe8cSJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 88893520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 889cb7bfe8cSJoe Wallwork . -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 890cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 891cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 892cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 893cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 89467b8a455SSatish Balay - -dm_plex_metric_target_complexity - Target metric complexity 895cb7bfe8cSJoe Wallwork 896cb7bfe8cSJoe Wallwork Switching between remeshers can be achieved using 897cb7bfe8cSJoe Wallwork 89867b8a455SSatish Balay . -dm_adaptor <pragmatic/mmg/parmmg> - specify dm adaptor to use 899cb7bfe8cSJoe Wallwork 900cb7bfe8cSJoe Wallwork Further options that are only relevant to Mmg and ParMmg: 901cb7bfe8cSJoe Wallwork 902cb7bfe8cSJoe Wallwork + -dm_plex_metric_gradation_factor - Maximum ratio by which edge lengths may grow during gradation 903cb7bfe8cSJoe Wallwork . -dm_plex_metric_num_iterations - Number of parallel mesh adaptation iterations for ParMmg 904cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_insert - Should node insertion/deletion be turned off? 905cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_swap - Should facet swapping be turned off? 906cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_move - Should node movement be turned off? 907cb7bfe8cSJoe Wallwork - -dm_plex_metric_verbosity - Choose a verbosity level from -1 (silent) to 10 (maximum). 90820282da2SJoe Wallwork 909db781477SPatrick Sanan .seealso: `DMPlexMetricCreateUniform()`, `DMPlexMetricCreateIsotropic()` 910cb7bfe8cSJoe Wallwork @*/ 911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricCreate(DM dm, PetscInt f, Vec *metric) 912d71ae5a4SJacob Faibussowitsch { 91393520041SJoe Wallwork PetscBool isotropic, uniform; 91420282da2SJoe Wallwork PetscInt coordDim, Nd; 91520282da2SJoe Wallwork 91620282da2SJoe Wallwork PetscFunctionBegin; 9179566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 91820282da2SJoe Wallwork Nd = coordDim * coordDim; 9199566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 9209566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 92193520041SJoe Wallwork if (uniform) { 92293520041SJoe Wallwork MPI_Comm comm; 92393520041SJoe Wallwork 9249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 925bc00d7afSJoe Wallwork PetscCheck(isotropic, comm, PETSC_ERR_SUP, "Uniform anisotropic metrics not supported"); 9269566063dSJacob Faibussowitsch PetscCall(VecCreate(comm, metric)); 9279566063dSJacob Faibussowitsch PetscCall(VecSetSizes(*metric, 1, PETSC_DECIDE)); 9289566063dSJacob Faibussowitsch PetscCall(VecSetFromOptions(*metric)); 929f6db075bSJoe Wallwork } else if (isotropic) PetscCall(DMPlexP1FieldCreate_Private(dm, f, 1, metric)); 930f6db075bSJoe Wallwork else PetscCall(DMPlexP1FieldCreate_Private(dm, f, Nd, metric)); 931*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93220282da2SJoe Wallwork } 93320282da2SJoe Wallwork 934cb7bfe8cSJoe Wallwork /*@ 93520282da2SJoe Wallwork DMPlexMetricCreateUniform - Construct a uniform isotropic metric 93620282da2SJoe Wallwork 93720282da2SJoe Wallwork Input parameters: 93820282da2SJoe Wallwork + dm - The DM 93920282da2SJoe Wallwork . f - The field number to use 94020282da2SJoe Wallwork - alpha - Scaling parameter for the diagonal 94120282da2SJoe Wallwork 94220282da2SJoe Wallwork Output parameter: 94320282da2SJoe Wallwork . metric - The uniform metric 94420282da2SJoe Wallwork 94520282da2SJoe Wallwork Level: beginner 94620282da2SJoe Wallwork 94793520041SJoe Wallwork Note: In this case, the metric is constant in space and so is only specified for a single vertex. 94820282da2SJoe Wallwork 949db781477SPatrick Sanan .seealso: `DMPlexMetricCreate()`, `DMPlexMetricCreateIsotropic()` 950cb7bfe8cSJoe Wallwork @*/ 951d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricCreateUniform(DM dm, PetscInt f, PetscReal alpha, Vec *metric) 952d71ae5a4SJacob Faibussowitsch { 95320282da2SJoe Wallwork PetscFunctionBegin; 9549566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetUniform(dm, PETSC_TRUE)); 9559566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, f, metric)); 9562c71b3e2SJacob Faibussowitsch PetscCheck(alpha, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform metric scaling is undefined"); 957bc00d7afSJoe Wallwork PetscCheck(alpha > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Uniform metric scaling should be in (0, inf)"); 9589566063dSJacob Faibussowitsch PetscCall(VecSet(*metric, alpha)); 9599566063dSJacob Faibussowitsch PetscCall(VecAssemblyBegin(*metric)); 9609566063dSJacob Faibussowitsch PetscCall(VecAssemblyEnd(*metric)); 961*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 96220282da2SJoe Wallwork } 96320282da2SJoe Wallwork 964d71ae5a4SJacob Faibussowitsch static void identity(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 965d71ae5a4SJacob Faibussowitsch { 96693520041SJoe Wallwork f0[0] = u[0]; 96793520041SJoe Wallwork } 96893520041SJoe Wallwork 969cb7bfe8cSJoe Wallwork /*@ 97020282da2SJoe Wallwork DMPlexMetricCreateIsotropic - Construct an isotropic metric from an error indicator 97120282da2SJoe Wallwork 97220282da2SJoe Wallwork Input parameters: 97320282da2SJoe Wallwork + dm - The DM 97420282da2SJoe Wallwork . f - The field number to use 97520282da2SJoe Wallwork - indicator - The error indicator 97620282da2SJoe Wallwork 97720282da2SJoe Wallwork Output parameter: 97820282da2SJoe Wallwork . metric - The isotropic metric 97920282da2SJoe Wallwork 98020282da2SJoe Wallwork Level: beginner 98120282da2SJoe Wallwork 98220282da2SJoe Wallwork Notes: 98320282da2SJoe Wallwork 98420282da2SJoe Wallwork It is assumed that the DM is comprised of simplices. 98520282da2SJoe Wallwork 98693520041SJoe Wallwork The indicator needs to be a scalar field. If it is not defined vertex-wise, then it is projected appropriately. 98720282da2SJoe Wallwork 988db781477SPatrick Sanan .seealso: `DMPlexMetricCreate()`, `DMPlexMetricCreateUniform()` 989cb7bfe8cSJoe Wallwork @*/ 990d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricCreateIsotropic(DM dm, PetscInt f, Vec indicator, Vec *metric) 991d71ae5a4SJacob Faibussowitsch { 99293520041SJoe Wallwork PetscInt m, n; 99320282da2SJoe Wallwork 99420282da2SJoe Wallwork PetscFunctionBegin; 9959566063dSJacob Faibussowitsch PetscCall(DMPlexMetricSetIsotropic(dm, PETSC_TRUE)); 9969566063dSJacob Faibussowitsch PetscCall(DMPlexMetricCreate(dm, f, metric)); 9979566063dSJacob Faibussowitsch PetscCall(VecGetSize(indicator, &m)); 9989566063dSJacob Faibussowitsch PetscCall(VecGetSize(*metric, &n)); 9999566063dSJacob Faibussowitsch if (m == n) PetscCall(VecCopy(indicator, *metric)); 100093520041SJoe Wallwork else { 100193520041SJoe Wallwork DM dmIndi; 10029371c9d4SSatish Balay void (*funcs[1])(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]); 100393520041SJoe Wallwork 10049566063dSJacob Faibussowitsch PetscCall(VecGetDM(indicator, &dmIndi)); 100593520041SJoe Wallwork funcs[0] = identity; 10069566063dSJacob Faibussowitsch PetscCall(DMProjectFieldLocal(dmIndi, 0.0, indicator, funcs, INSERT_VALUES, *metric)); 100720282da2SJoe Wallwork } 1008*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100920282da2SJoe Wallwork } 101020282da2SJoe Wallwork 1011f6db075bSJoe Wallwork /*@ 1012f6db075bSJoe Wallwork DMPlexMetricDeterminantCreate - Create the determinant field for a Riemannian metric 1013f6db075bSJoe Wallwork 1014f6db075bSJoe Wallwork Input parameters: 1015f6db075bSJoe Wallwork + dm - The DM of the metric field 1016f6db075bSJoe Wallwork - f - The field number to use 1017f6db075bSJoe Wallwork 1018f6db075bSJoe Wallwork Output parameter: 1019f6db075bSJoe Wallwork + determinant - The determinant field 1020f6db075bSJoe Wallwork - dmDet - The corresponding DM 1021f6db075bSJoe Wallwork 1022f6db075bSJoe Wallwork Level: beginner 1023f6db075bSJoe Wallwork 1024f6db075bSJoe Wallwork .seealso: DMPlexMetricCreateUniform(), DMPlexMetricCreateIsotropic(), DMPlexMetricCreate() 1025f6db075bSJoe Wallwork @*/ 1026d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricDeterminantCreate(DM dm, PetscInt f, Vec *determinant, DM *dmDet) 1027d71ae5a4SJacob Faibussowitsch { 1028f6db075bSJoe Wallwork PetscBool uniform; 1029f6db075bSJoe Wallwork 1030f6db075bSJoe Wallwork PetscFunctionBegin; 1031f6db075bSJoe Wallwork PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 1032f6db075bSJoe Wallwork PetscCall(DMClone(dm, dmDet)); 1033f6db075bSJoe Wallwork if (uniform) { 1034f6db075bSJoe Wallwork MPI_Comm comm; 1035f6db075bSJoe Wallwork 1036f6db075bSJoe Wallwork PetscCall(PetscObjectGetComm((PetscObject)*dmDet, &comm)); 1037f6db075bSJoe Wallwork PetscCall(VecCreate(comm, determinant)); 1038f6db075bSJoe Wallwork PetscCall(VecSetSizes(*determinant, 1, PETSC_DECIDE)); 1039f6db075bSJoe Wallwork PetscCall(VecSetFromOptions(*determinant)); 1040f6db075bSJoe Wallwork } else PetscCall(DMPlexP1FieldCreate_Private(*dmDet, f, 1, determinant)); 1041*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1042f6db075bSJoe Wallwork } 1043f6db075bSJoe Wallwork 1044d71ae5a4SJacob Faibussowitsch static PetscErrorCode LAPACKsyevFail(PetscInt dim, PetscScalar Mpos[]) 1045d71ae5a4SJacob Faibussowitsch { 104682490253SJoe Wallwork PetscInt i, j; 104782490253SJoe Wallwork 104882490253SJoe Wallwork PetscFunctionBegin; 1049*3ba16761SJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Failed to apply LAPACKsyev to the matrix\n")); 105082490253SJoe Wallwork for (i = 0; i < dim; ++i) { 1051*3ba16761SJacob Faibussowitsch if (i == 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, " [[")); 1052*3ba16761SJacob Faibussowitsch else PetscCall(PetscPrintf(PETSC_COMM_SELF, " [")); 105382490253SJoe Wallwork for (j = 0; j < dim; ++j) { 1054*3ba16761SJacob Faibussowitsch if (j < dim - 1) PetscCall(PetscPrintf(PETSC_COMM_SELF, "%15.8e, ", (double)PetscAbsScalar(Mpos[i * dim + j]))); 1055*3ba16761SJacob Faibussowitsch else PetscCall(PetscPrintf(PETSC_COMM_SELF, "%15.8e", (double)PetscAbsScalar(Mpos[i * dim + j]))); 105682490253SJoe Wallwork } 1057*3ba16761SJacob Faibussowitsch if (i < dim - 1) PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 1058*3ba16761SJacob Faibussowitsch else PetscCall(PetscPrintf(PETSC_COMM_SELF, "]]\n")); 105982490253SJoe Wallwork } 1060*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106182490253SJoe Wallwork } 106282490253SJoe Wallwork 1063d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMetricModify_Private(PetscInt dim, PetscReal h_min, PetscReal h_max, PetscReal a_max, PetscScalar Mp[], PetscScalar *detMp) 1064d71ae5a4SJacob Faibussowitsch { 106520282da2SJoe Wallwork PetscInt i, j, k; 106620282da2SJoe Wallwork PetscReal *eigs, max_eig, l_min = 1.0 / (h_max * h_max), l_max = 1.0 / (h_min * h_min), la_min = 1.0 / (a_max * a_max); 106720282da2SJoe Wallwork PetscScalar *Mpos; 106820282da2SJoe Wallwork 106920282da2SJoe Wallwork PetscFunctionBegin; 10709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim * dim, &Mpos, dim, &eigs)); 107120282da2SJoe Wallwork 107220282da2SJoe Wallwork /* Symmetrize */ 107320282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 107420282da2SJoe Wallwork Mpos[i * dim + i] = Mp[i * dim + i]; 107520282da2SJoe Wallwork for (j = i + 1; j < dim; ++j) { 107620282da2SJoe Wallwork Mpos[i * dim + j] = 0.5 * (Mp[i * dim + j] + Mp[j * dim + i]); 107720282da2SJoe Wallwork Mpos[j * dim + i] = Mpos[i * dim + j]; 107820282da2SJoe Wallwork } 107920282da2SJoe Wallwork } 108020282da2SJoe Wallwork 108120282da2SJoe Wallwork /* Compute eigendecomposition */ 108293520041SJoe Wallwork if (dim == 1) { 108393520041SJoe Wallwork /* Isotropic case */ 108493520041SJoe Wallwork eigs[0] = PetscRealPart(Mpos[0]); 108593520041SJoe Wallwork Mpos[0] = 1.0; 108693520041SJoe Wallwork } else { 108793520041SJoe Wallwork /* Anisotropic case */ 108820282da2SJoe Wallwork PetscScalar *work; 108920282da2SJoe Wallwork PetscBLASInt lwork; 109020282da2SJoe Wallwork 109120282da2SJoe Wallwork lwork = 5 * dim; 10929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(5 * dim, &work)); 109320282da2SJoe Wallwork { 109420282da2SJoe Wallwork PetscBLASInt lierr; 109520282da2SJoe Wallwork PetscBLASInt nb; 109620282da2SJoe Wallwork 10979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(dim, &nb)); 10989566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 109920282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 110020282da2SJoe Wallwork { 110120282da2SJoe Wallwork PetscReal *rwork; 11029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3 * dim, &rwork)); 1103792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, Mpos, &nb, eigs, work, &lwork, rwork, &lierr)); 11049566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 110520282da2SJoe Wallwork } 110620282da2SJoe Wallwork #else 1107792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, Mpos, &nb, eigs, work, &lwork, &lierr)); 110820282da2SJoe Wallwork #endif 110982490253SJoe Wallwork if (lierr) { 111082490253SJoe Wallwork for (i = 0; i < dim; ++i) { 111182490253SJoe Wallwork Mpos[i * dim + i] = Mp[i * dim + i]; 111282490253SJoe Wallwork for (j = i + 1; j < dim; ++j) { 111382490253SJoe Wallwork Mpos[i * dim + j] = 0.5 * (Mp[i * dim + j] + Mp[j * dim + i]); 111482490253SJoe Wallwork Mpos[j * dim + i] = Mpos[i * dim + j]; 111582490253SJoe Wallwork } 111682490253SJoe Wallwork } 1117*3ba16761SJacob Faibussowitsch PetscCall(LAPACKsyevFail(dim, Mpos)); 111898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int)lierr); 111982490253SJoe Wallwork } 11209566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 112120282da2SJoe Wallwork } 11229566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 112320282da2SJoe Wallwork } 112420282da2SJoe Wallwork 112520282da2SJoe Wallwork /* Reflect to positive orthant and enforce maximum and minimum size */ 112620282da2SJoe Wallwork max_eig = 0.0; 112720282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 112820282da2SJoe Wallwork eigs[i] = PetscMin(l_max, PetscMax(l_min, PetscAbsReal(eigs[i]))); 112920282da2SJoe Wallwork max_eig = PetscMax(eigs[i], max_eig); 113020282da2SJoe Wallwork } 113120282da2SJoe Wallwork 11323f07679eSJoe Wallwork /* Enforce maximum anisotropy and compute determinant */ 11333f07679eSJoe Wallwork *detMp = 1.0; 113420282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 113520282da2SJoe Wallwork if (a_max > 1.0) eigs[i] = PetscMax(eigs[i], max_eig * la_min); 11363f07679eSJoe Wallwork *detMp *= eigs[i]; 113720282da2SJoe Wallwork } 113820282da2SJoe Wallwork 113920282da2SJoe Wallwork /* Reconstruct Hessian */ 114020282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 114120282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 114220282da2SJoe Wallwork Mp[i * dim + j] = 0.0; 1143ad540459SPierre Jolivet for (k = 0; k < dim; ++k) Mp[i * dim + j] += Mpos[k * dim + i] * eigs[k] * Mpos[k * dim + j]; 114420282da2SJoe Wallwork } 114520282da2SJoe Wallwork } 11469566063dSJacob Faibussowitsch PetscCall(PetscFree2(Mpos, eigs)); 114720282da2SJoe Wallwork 1148*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114920282da2SJoe Wallwork } 115020282da2SJoe Wallwork 1151cb7bfe8cSJoe Wallwork /*@ 115220282da2SJoe Wallwork DMPlexMetricEnforceSPD - Enforce symmetric positive-definiteness of a metric 115320282da2SJoe Wallwork 115420282da2SJoe Wallwork Input parameters: 115520282da2SJoe Wallwork + dm - The DM 11563f07679eSJoe Wallwork . metricIn - The metric 115799abec2bSJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 11583f07679eSJoe Wallwork - restrictAnisotropy - Should maximum anisotropy be enforced? 115920282da2SJoe Wallwork 116020282da2SJoe Wallwork Output parameter: 11613f07679eSJoe Wallwork + metricOut - The metric 11623f07679eSJoe Wallwork - determinant - Its determinant 116320282da2SJoe Wallwork 116420282da2SJoe Wallwork Level: beginner 116520282da2SJoe Wallwork 1166cb7bfe8cSJoe Wallwork Notes: 1167cb7bfe8cSJoe Wallwork 1168cb7bfe8cSJoe Wallwork Relevant command line options: 1169cb7bfe8cSJoe Wallwork 117093520041SJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 117193520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 117293520041SJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1173cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1174cb7bfe8cSJoe Wallwork - -dm_plex_metric_a_max - Maximum tolerated anisotropy 1175cb7bfe8cSJoe Wallwork 1176db781477SPatrick Sanan .seealso: `DMPlexMetricNormalize()`, `DMPlexMetricIntersection()` 1177cb7bfe8cSJoe Wallwork @*/ 1178d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricEnforceSPD(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec metricOut, Vec determinant) 1179d71ae5a4SJacob Faibussowitsch { 11803f07679eSJoe Wallwork DM dmDet; 118193520041SJoe Wallwork PetscBool isotropic, uniform; 118220282da2SJoe Wallwork PetscInt dim, vStart, vEnd, v; 11833f07679eSJoe Wallwork PetscScalar *met, *det; 118420282da2SJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0; 118520282da2SJoe Wallwork 118620282da2SJoe Wallwork PetscFunctionBegin; 11879566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricEnforceSPD, 0, 0, 0, 0)); 118820282da2SJoe Wallwork 118920282da2SJoe Wallwork /* Extract metadata from dm */ 11909566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 119120282da2SJoe Wallwork if (restrictSizes) { 11929566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMinimumMagnitude(dm, &h_min)); 11939566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumMagnitude(dm, &h_max)); 119499abec2bSJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 119599abec2bSJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 1196bc00d7afSJoe Wallwork PetscCheck(h_min < h_max, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Minimum metric magnitude should be smaller than maximum metric magnitude"); 119799abec2bSJoe Wallwork } 119899abec2bSJoe Wallwork if (restrictAnisotropy) { 11999566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumAnisotropy(dm, &a_max)); 120099abec2bSJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 120120282da2SJoe Wallwork } 120220282da2SJoe Wallwork 120393520041SJoe Wallwork /* Setup output metric */ 12045241a91fSJoe Wallwork PetscCall(VecCopy(metricIn, metricOut)); 120593520041SJoe Wallwork 120693520041SJoe Wallwork /* Enforce SPD and extract determinant */ 12075241a91fSJoe Wallwork PetscCall(VecGetArray(metricOut, &met)); 12089566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 12099566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 121093520041SJoe Wallwork if (uniform) { 1211d1a5b989SMatthew G. Knepley PetscCheck(isotropic, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform anisotropic metrics cannot exist"); 121293520041SJoe Wallwork 121393520041SJoe Wallwork /* Uniform case */ 12145241a91fSJoe Wallwork PetscCall(VecGetArray(determinant, &det)); 12159566063dSJacob Faibussowitsch PetscCall(DMPlexMetricModify_Private(1, h_min, h_max, a_max, met, det)); 12165241a91fSJoe Wallwork PetscCall(VecRestoreArray(determinant, &det)); 121793520041SJoe Wallwork } else { 121893520041SJoe Wallwork /* Spatially varying case */ 121993520041SJoe Wallwork PetscInt nrow; 122093520041SJoe Wallwork 122193520041SJoe Wallwork if (isotropic) nrow = 1; 122293520041SJoe Wallwork else nrow = dim; 12235241a91fSJoe Wallwork PetscCall(VecGetDM(determinant, &dmDet)); 12249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 12255241a91fSJoe Wallwork PetscCall(VecGetArray(determinant, &det)); 122620282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 12273f07679eSJoe Wallwork PetscScalar *vmet, *vdet; 12289566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &vmet)); 12299566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dmDet, v, det, &vdet)); 12309566063dSJacob Faibussowitsch PetscCall(DMPlexMetricModify_Private(nrow, h_min, h_max, a_max, vmet, vdet)); 123120282da2SJoe Wallwork } 12325241a91fSJoe Wallwork PetscCall(VecRestoreArray(determinant, &det)); 123393520041SJoe Wallwork } 12345241a91fSJoe Wallwork PetscCall(VecRestoreArray(metricOut, &met)); 1235fe902aceSJoe Wallwork 12369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricEnforceSPD, 0, 0, 0, 0)); 1237*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123820282da2SJoe Wallwork } 123920282da2SJoe Wallwork 1240d71ae5a4SJacob Faibussowitsch static void detMFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 1241d71ae5a4SJacob Faibussowitsch { 124220282da2SJoe Wallwork const PetscScalar p = constants[0]; 124320282da2SJoe Wallwork 1244985ad86eSJose E. Roman f0[0] = PetscPowScalar(u[0], p / (2.0 * p + dim)); 124520282da2SJoe Wallwork } 124620282da2SJoe Wallwork 1247cb7bfe8cSJoe Wallwork /*@ 124820282da2SJoe Wallwork DMPlexMetricNormalize - Apply L-p normalization to a metric 124920282da2SJoe Wallwork 125020282da2SJoe Wallwork Input parameters: 125120282da2SJoe Wallwork + dm - The DM 125220282da2SJoe Wallwork . metricIn - The unnormalized metric 125316522936SJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 125416522936SJoe Wallwork - restrictAnisotropy - Should maximum metric anisotropy be enforced? 125520282da2SJoe Wallwork 125620282da2SJoe Wallwork Output parameter: 125720282da2SJoe Wallwork . metricOut - The normalized metric 125820282da2SJoe Wallwork 125920282da2SJoe Wallwork Level: beginner 126020282da2SJoe Wallwork 1261cb7bfe8cSJoe Wallwork Notes: 1262cb7bfe8cSJoe Wallwork 1263cb7bfe8cSJoe Wallwork Relevant command line options: 1264cb7bfe8cSJoe Wallwork 126593520041SJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 126693520041SJoe Wallwork . -dm_plex_metric_uniform - Is the metric uniform? 126793520041SJoe Wallwork . -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 1268cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1269cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1270cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 1271cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 1272cb7bfe8cSJoe Wallwork - -dm_plex_metric_target_complexity - Target metric complexity 1273cb7bfe8cSJoe Wallwork 1274db781477SPatrick Sanan .seealso: `DMPlexMetricEnforceSPD()`, `DMPlexMetricIntersection()` 1275cb7bfe8cSJoe Wallwork @*/ 1276d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricNormalize(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec metricOut, Vec determinant) 1277d71ae5a4SJacob Faibussowitsch { 12783f07679eSJoe Wallwork DM dmDet; 127920282da2SJoe Wallwork MPI_Comm comm; 128093520041SJoe Wallwork PetscBool restrictAnisotropyFirst, isotropic, uniform; 128120282da2SJoe Wallwork PetscDS ds; 128220282da2SJoe Wallwork PetscInt dim, Nd, vStart, vEnd, v, i; 12833f07679eSJoe Wallwork PetscScalar *met, *det, integral, constants[1]; 128493520041SJoe Wallwork PetscReal p, h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0, factGlob, fact, target, realIntegral; 128520282da2SJoe Wallwork 128620282da2SJoe Wallwork PetscFunctionBegin; 12879566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricNormalize, 0, 0, 0, 0)); 128820282da2SJoe Wallwork 128920282da2SJoe Wallwork /* Extract metadata from dm */ 12909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 12919566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 12929566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 12939566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 129493520041SJoe Wallwork if (isotropic) Nd = 1; 129593520041SJoe Wallwork else Nd = dim * dim; 129620282da2SJoe Wallwork 129720282da2SJoe Wallwork /* Set up metric and ensure it is SPD */ 12989566063dSJacob Faibussowitsch PetscCall(DMPlexMetricRestrictAnisotropyFirst(dm, &restrictAnisotropyFirst)); 12995241a91fSJoe Wallwork PetscCall(DMPlexMetricEnforceSPD(dm, metricIn, PETSC_FALSE, (PetscBool)(restrictAnisotropy && restrictAnisotropyFirst), metricOut, determinant)); 130020282da2SJoe Wallwork 130120282da2SJoe Wallwork /* Compute global normalization factor */ 13029566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetTargetComplexity(dm, &target)); 13039566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetNormalizationOrder(dm, &p)); 130416522936SJoe Wallwork constants[0] = p; 130593520041SJoe Wallwork if (uniform) { 1306bc00d7afSJoe Wallwork PetscCheck(isotropic, comm, PETSC_ERR_SUP, "Uniform anisotropic metrics not supported"); 130793520041SJoe Wallwork DM dmTmp; 130893520041SJoe Wallwork Vec tmp; 130993520041SJoe Wallwork 13109566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dmTmp)); 13119566063dSJacob Faibussowitsch PetscCall(DMPlexP1FieldCreate_Private(dmTmp, 0, 1, &tmp)); 13129566063dSJacob Faibussowitsch PetscCall(VecGetArray(determinant, &det)); 13139566063dSJacob Faibussowitsch PetscCall(VecSet(tmp, det[0])); 13149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(determinant, &det)); 13159566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmTmp, &ds)); 13169566063dSJacob Faibussowitsch PetscCall(PetscDSSetConstants(ds, 1, constants)); 13179566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, 0, detMFunc)); 13189566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dmTmp, tmp, &integral, NULL)); 13199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&tmp)); 13209566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dmTmp)); 132193520041SJoe Wallwork } else { 13229566063dSJacob Faibussowitsch PetscCall(VecGetDM(determinant, &dmDet)); 13239566063dSJacob Faibussowitsch PetscCall(DMGetDS(dmDet, &ds)); 13249566063dSJacob Faibussowitsch PetscCall(PetscDSSetConstants(ds, 1, constants)); 13259566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(ds, 0, detMFunc)); 13269566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dmDet, determinant, &integral, NULL)); 132793520041SJoe Wallwork } 13283f07679eSJoe Wallwork realIntegral = PetscRealPart(integral); 1329bc00d7afSJoe Wallwork PetscCheck(realIntegral > 1.0e-30, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Global metric normalization factor must be in (0, inf). Is the input metric positive-definite?"); 13303f07679eSJoe Wallwork factGlob = PetscPowReal(target / realIntegral, 2.0 / dim); 133120282da2SJoe Wallwork 133220282da2SJoe Wallwork /* Apply local scaling */ 133320282da2SJoe Wallwork if (restrictSizes) { 13349566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMinimumMagnitude(dm, &h_min)); 13359566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumMagnitude(dm, &h_max)); 133616522936SJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 133716522936SJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 1338bc00d7afSJoe Wallwork PetscCheck(h_min < h_max, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Minimum metric magnitude should be smaller than maximum metric magnitude"); 133916522936SJoe Wallwork } 134016522936SJoe Wallwork if (restrictAnisotropy && !restrictAnisotropyFirst) { 13419566063dSJacob Faibussowitsch PetscCall(DMPlexMetricGetMaximumAnisotropy(dm, &a_max)); 134216522936SJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 134320282da2SJoe Wallwork } 13445241a91fSJoe Wallwork PetscCall(VecGetArray(metricOut, &met)); 13459566063dSJacob Faibussowitsch PetscCall(VecGetArray(determinant, &det)); 134693520041SJoe Wallwork if (uniform) { 134793520041SJoe Wallwork /* Uniform case */ 134893520041SJoe Wallwork met[0] *= factGlob * PetscPowReal(PetscAbsScalar(det[0]), -1.0 / (2 * p + dim)); 13499566063dSJacob Faibussowitsch if (restrictSizes) PetscCall(DMPlexMetricModify_Private(1, h_min, h_max, a_max, met, det)); 135093520041SJoe Wallwork } else { 135193520041SJoe Wallwork /* Spatially varying case */ 135293520041SJoe Wallwork PetscInt nrow; 135393520041SJoe Wallwork 135493520041SJoe Wallwork if (isotropic) nrow = 1; 135593520041SJoe Wallwork else nrow = dim; 13569566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 13575241a91fSJoe Wallwork PetscCall(VecGetDM(determinant, &dmDet)); 135820282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 13593f07679eSJoe Wallwork PetscScalar *Mp, *detM; 136020282da2SJoe Wallwork 13619566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &Mp)); 13629566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dmDet, v, det, &detM)); 13633f07679eSJoe Wallwork fact = factGlob * PetscPowReal(PetscAbsScalar(detM[0]), -1.0 / (2 * p + dim)); 136420282da2SJoe Wallwork for (i = 0; i < Nd; ++i) Mp[i] *= fact; 13659566063dSJacob Faibussowitsch if (restrictSizes) PetscCall(DMPlexMetricModify_Private(nrow, h_min, h_max, a_max, Mp, detM)); 136693520041SJoe Wallwork } 136720282da2SJoe Wallwork } 13689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(determinant, &det)); 13695241a91fSJoe Wallwork PetscCall(VecRestoreArray(metricOut, &met)); 137020282da2SJoe Wallwork 13719566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricNormalize, 0, 0, 0, 0)); 1372*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 137320282da2SJoe Wallwork } 137420282da2SJoe Wallwork 1375cb7bfe8cSJoe Wallwork /*@ 137620282da2SJoe Wallwork DMPlexMetricAverage - Compute the average of a list of metrics 137720282da2SJoe Wallwork 1378f1a722f8SMatthew G. Knepley Input Parameters: 137920282da2SJoe Wallwork + dm - The DM 138020282da2SJoe Wallwork . numMetrics - The number of metrics to be averaged 138120282da2SJoe Wallwork . weights - Weights for the average 138220282da2SJoe Wallwork - metrics - The metrics to be averaged 138320282da2SJoe Wallwork 138420282da2SJoe Wallwork Output Parameter: 138520282da2SJoe Wallwork . metricAvg - The averaged metric 138620282da2SJoe Wallwork 138720282da2SJoe Wallwork Level: beginner 138820282da2SJoe Wallwork 138920282da2SJoe Wallwork Notes: 139020282da2SJoe Wallwork The weights should sum to unity. 139120282da2SJoe Wallwork 139220282da2SJoe Wallwork If weights are not provided then an unweighted average is used. 139320282da2SJoe Wallwork 1394db781477SPatrick Sanan .seealso: `DMPlexMetricAverage2()`, `DMPlexMetricAverage3()`, `DMPlexMetricIntersection()` 1395cb7bfe8cSJoe Wallwork @*/ 1396d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricAverage(DM dm, PetscInt numMetrics, PetscReal weights[], Vec metrics[], Vec metricAvg) 1397d71ae5a4SJacob Faibussowitsch { 139820282da2SJoe Wallwork PetscBool haveWeights = PETSC_TRUE; 139993520041SJoe Wallwork PetscInt i, m, n; 140020282da2SJoe Wallwork PetscReal sum = 0.0, tol = 1.0e-10; 140120282da2SJoe Wallwork 140220282da2SJoe Wallwork PetscFunctionBegin; 14039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricAverage, 0, 0, 0, 0)); 140463a3b9bcSJacob Faibussowitsch PetscCheck(numMetrics >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot average %" PetscInt_FMT " < 1 metrics", numMetrics); 14055241a91fSJoe Wallwork PetscCall(VecSet(metricAvg, 0.0)); 14065241a91fSJoe Wallwork PetscCall(VecGetSize(metricAvg, &m)); 140793520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) { 14089566063dSJacob Faibussowitsch PetscCall(VecGetSize(metrics[i], &n)); 14095f80ce2aSJacob Faibussowitsch PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Averaging different metric types not implemented"); 141093520041SJoe Wallwork } 141120282da2SJoe Wallwork 141220282da2SJoe Wallwork /* Default to the unweighted case */ 141320282da2SJoe Wallwork if (!weights) { 14149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numMetrics, &weights)); 141520282da2SJoe Wallwork haveWeights = PETSC_FALSE; 1416ad540459SPierre Jolivet for (i = 0; i < numMetrics; ++i) weights[i] = 1.0 / numMetrics; 141720282da2SJoe Wallwork } 141820282da2SJoe Wallwork 141920282da2SJoe Wallwork /* Check weights sum to unity */ 142093520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) sum += weights[i]; 14215f80ce2aSJacob Faibussowitsch PetscCheck(PetscAbsReal(sum - 1) <= tol, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Weights do not sum to unity"); 142220282da2SJoe Wallwork 142320282da2SJoe Wallwork /* Compute metric average */ 14245241a91fSJoe Wallwork for (i = 0; i < numMetrics; ++i) PetscCall(VecAXPY(metricAvg, weights[i], metrics[i])); 14259566063dSJacob Faibussowitsch if (!haveWeights) PetscCall(PetscFree(weights)); 1426fe902aceSJoe Wallwork 14279566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricAverage, 0, 0, 0, 0)); 1428*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142920282da2SJoe Wallwork } 143020282da2SJoe Wallwork 1431cb7bfe8cSJoe Wallwork /*@ 143220282da2SJoe Wallwork DMPlexMetricAverage2 - Compute the unweighted average of two metrics 143320282da2SJoe Wallwork 1434f1a722f8SMatthew G. Knepley Input Parameters: 143520282da2SJoe Wallwork + dm - The DM 143620282da2SJoe Wallwork . metric1 - The first metric to be averaged 143720282da2SJoe Wallwork - metric2 - The second metric to be averaged 143820282da2SJoe Wallwork 143920282da2SJoe Wallwork Output Parameter: 144020282da2SJoe Wallwork . metricAvg - The averaged metric 144120282da2SJoe Wallwork 144220282da2SJoe Wallwork Level: beginner 144320282da2SJoe Wallwork 1444db781477SPatrick Sanan .seealso: `DMPlexMetricAverage()`, `DMPlexMetricAverage3()` 1445cb7bfe8cSJoe Wallwork @*/ 1446d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricAverage2(DM dm, Vec metric1, Vec metric2, Vec metricAvg) 1447d71ae5a4SJacob Faibussowitsch { 144820282da2SJoe Wallwork PetscReal weights[2] = {0.5, 0.5}; 144920282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 145020282da2SJoe Wallwork 145120282da2SJoe Wallwork PetscFunctionBegin; 14529566063dSJacob Faibussowitsch PetscCall(DMPlexMetricAverage(dm, 2, weights, metrics, metricAvg)); 1453*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 145420282da2SJoe Wallwork } 145520282da2SJoe Wallwork 1456cb7bfe8cSJoe Wallwork /*@ 145720282da2SJoe Wallwork DMPlexMetricAverage3 - Compute the unweighted average of three metrics 145820282da2SJoe Wallwork 1459f1a722f8SMatthew G. Knepley Input Parameters: 146020282da2SJoe Wallwork + dm - The DM 146120282da2SJoe Wallwork . metric1 - The first metric to be averaged 146220282da2SJoe Wallwork . metric2 - The second metric to be averaged 146320282da2SJoe Wallwork - metric3 - The third metric to be averaged 146420282da2SJoe Wallwork 146520282da2SJoe Wallwork Output Parameter: 146620282da2SJoe Wallwork . metricAvg - The averaged metric 146720282da2SJoe Wallwork 146820282da2SJoe Wallwork Level: beginner 146920282da2SJoe Wallwork 1470db781477SPatrick Sanan .seealso: `DMPlexMetricAverage()`, `DMPlexMetricAverage2()` 1471cb7bfe8cSJoe Wallwork @*/ 1472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricAverage3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec metricAvg) 1473d71ae5a4SJacob Faibussowitsch { 147420282da2SJoe Wallwork PetscReal weights[3] = {1.0 / 3.0, 1.0 / 3.0, 1.0 / 3.0}; 147520282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 147620282da2SJoe Wallwork 147720282da2SJoe Wallwork PetscFunctionBegin; 14789566063dSJacob Faibussowitsch PetscCall(DMPlexMetricAverage(dm, 3, weights, metrics, metricAvg)); 1479*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 148020282da2SJoe Wallwork } 148120282da2SJoe Wallwork 1482d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMetricIntersection_Private(PetscInt dim, PetscScalar M1[], PetscScalar M2[]) 1483d71ae5a4SJacob Faibussowitsch { 148420282da2SJoe Wallwork PetscInt i, j, k, l, m; 1485e2606525SJoe Wallwork PetscReal *evals; 148620282da2SJoe Wallwork PetscScalar *evecs, *sqrtM1, *isqrtM1; 148720282da2SJoe Wallwork 148820282da2SJoe Wallwork PetscFunctionBegin; 148993520041SJoe Wallwork 149093520041SJoe Wallwork /* Isotropic case */ 149193520041SJoe Wallwork if (dim == 1) { 14926f71502aSJoe Wallwork M2[0] = (PetscScalar)PetscMax(PetscRealPart(M1[0]), PetscRealPart(M2[0])); 1493*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149493520041SJoe Wallwork } 149593520041SJoe Wallwork 149693520041SJoe Wallwork /* Anisotropic case */ 1497e2606525SJoe Wallwork PetscCall(PetscMalloc4(dim * dim, &evecs, dim * dim, &sqrtM1, dim * dim, &isqrtM1, dim, &evals)); 149820282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 1499ad540459SPierre Jolivet for (j = 0; j < dim; ++j) evecs[i * dim + j] = M1[i * dim + j]; 150020282da2SJoe Wallwork } 150120282da2SJoe Wallwork { 150220282da2SJoe Wallwork PetscScalar *work; 150320282da2SJoe Wallwork PetscBLASInt lwork; 150420282da2SJoe Wallwork 150520282da2SJoe Wallwork lwork = 5 * dim; 15069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(5 * dim, &work)); 150720282da2SJoe Wallwork { 150820282da2SJoe Wallwork PetscBLASInt lierr, nb; 1509e2606525SJoe Wallwork PetscReal sqrtj; 151020282da2SJoe Wallwork 151120282da2SJoe Wallwork /* Compute eigendecomposition of M1 */ 15129566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(dim, &nb)); 15139566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 151420282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 151520282da2SJoe Wallwork { 151620282da2SJoe Wallwork PetscReal *rwork; 15179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3 * dim, &rwork)); 1518792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, rwork, &lierr)); 15199566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 152020282da2SJoe Wallwork } 152120282da2SJoe Wallwork #else 1522792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, &lierr)); 152320282da2SJoe Wallwork #endif 152482490253SJoe Wallwork if (lierr) { 1525*3ba16761SJacob Faibussowitsch PetscCall(LAPACKsyevFail(dim, M1)); 152698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int)lierr); 152782490253SJoe Wallwork } 15289566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 152920282da2SJoe Wallwork 1530e2606525SJoe Wallwork /* Compute square root and the reciprocal thereof */ 153120282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 153220282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 1533e2606525SJoe Wallwork sqrtM1[i * dim + k] = 0.0; 1534e2606525SJoe Wallwork isqrtM1[i * dim + k] = 0.0; 1535e2606525SJoe Wallwork for (j = 0; j < dim; ++j) { 1536e2606525SJoe Wallwork sqrtj = PetscSqrtReal(evals[j]); 1537e2606525SJoe Wallwork sqrtM1[i * dim + k] += evecs[j * dim + i] * sqrtj * evecs[j * dim + k]; 1538e2606525SJoe Wallwork isqrtM1[i * dim + k] += evecs[j * dim + i] * (1.0 / sqrtj) * evecs[j * dim + k]; 153920282da2SJoe Wallwork } 154020282da2SJoe Wallwork } 154120282da2SJoe Wallwork } 154220282da2SJoe Wallwork 1543e2606525SJoe Wallwork /* Map M2 into the space spanned by the eigenvectors of M1 */ 154420282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 154520282da2SJoe Wallwork for (l = 0; l < dim; ++l) { 1546e2606525SJoe Wallwork evecs[i * dim + l] = 0.0; 1547e2606525SJoe Wallwork for (j = 0; j < dim; ++j) { 1548ad540459SPierre Jolivet for (k = 0; k < dim; ++k) evecs[i * dim + l] += isqrtM1[j * dim + i] * M2[j * dim + k] * isqrtM1[k * dim + l]; 154920282da2SJoe Wallwork } 155020282da2SJoe Wallwork } 155120282da2SJoe Wallwork } 155220282da2SJoe Wallwork 155320282da2SJoe Wallwork /* Compute eigendecomposition */ 15549566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPush(PETSC_FP_TRAP_OFF)); 155520282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 155620282da2SJoe Wallwork { 155720282da2SJoe Wallwork PetscReal *rwork; 15589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(3 * dim, &rwork)); 1559792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, rwork, &lierr)); 15609566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 156120282da2SJoe Wallwork } 156220282da2SJoe Wallwork #else 1563792fecdfSBarry Smith PetscCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, &lierr)); 156420282da2SJoe Wallwork #endif 156582490253SJoe Wallwork if (lierr) { 156682490253SJoe Wallwork for (i = 0; i < dim; ++i) { 156782490253SJoe Wallwork for (l = 0; l < dim; ++l) { 1568e2606525SJoe Wallwork evecs[i * dim + l] = 0.0; 1569e2606525SJoe Wallwork for (j = 0; j < dim; ++j) { 1570ad540459SPierre Jolivet for (k = 0; k < dim; ++k) evecs[i * dim + l] += isqrtM1[j * dim + i] * M2[j * dim + k] * isqrtM1[k * dim + l]; 157182490253SJoe Wallwork } 157282490253SJoe Wallwork } 157382490253SJoe Wallwork } 1574*3ba16761SJacob Faibussowitsch PetscCall(LAPACKsyevFail(dim, evecs)); 157598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int)lierr); 157682490253SJoe Wallwork } 15779566063dSJacob Faibussowitsch PetscCall(PetscFPTrapPop()); 157820282da2SJoe Wallwork 157920282da2SJoe Wallwork /* Modify eigenvalues */ 1580e2606525SJoe Wallwork for (i = 0; i < dim; ++i) evals[i] = PetscMax(evals[i], 1.0); 158120282da2SJoe Wallwork 158220282da2SJoe Wallwork /* Map back to get the intersection */ 158320282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 1584e2606525SJoe Wallwork for (m = 0; m < dim; ++m) { 1585e2606525SJoe Wallwork M2[i * dim + m] = 0.0; 158620282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 158720282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 1588ad540459SPierre Jolivet for (l = 0; l < dim; ++l) M2[i * dim + m] += sqrtM1[j * dim + i] * evecs[j * dim + k] * evals[k] * evecs[l * dim + k] * sqrtM1[l * dim + m]; 158920282da2SJoe Wallwork } 159020282da2SJoe Wallwork } 159120282da2SJoe Wallwork } 159220282da2SJoe Wallwork } 159320282da2SJoe Wallwork } 15949566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 159520282da2SJoe Wallwork } 1596e2606525SJoe Wallwork PetscCall(PetscFree4(evecs, sqrtM1, isqrtM1, evals)); 1597*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159820282da2SJoe Wallwork } 159920282da2SJoe Wallwork 1600cb7bfe8cSJoe Wallwork /*@ 160120282da2SJoe Wallwork DMPlexMetricIntersection - Compute the intersection of a list of metrics 160220282da2SJoe Wallwork 1603f1a722f8SMatthew G. Knepley Input Parameters: 160420282da2SJoe Wallwork + dm - The DM 160520282da2SJoe Wallwork . numMetrics - The number of metrics to be intersected 160620282da2SJoe Wallwork - metrics - The metrics to be intersected 160720282da2SJoe Wallwork 160820282da2SJoe Wallwork Output Parameter: 160920282da2SJoe Wallwork . metricInt - The intersected metric 161020282da2SJoe Wallwork 161120282da2SJoe Wallwork Level: beginner 161220282da2SJoe Wallwork 161320282da2SJoe Wallwork Notes: 161420282da2SJoe Wallwork 1615e2606525SJoe Wallwork The intersection of a list of metrics has the minimal ellipsoid which fits within the ellipsoids of the component metrics. 161620282da2SJoe Wallwork 1617e2606525SJoe Wallwork The implementation used here is only consistent with the minimal ellipsoid definition in the case numMetrics = 2. 161820282da2SJoe Wallwork 1619db781477SPatrick Sanan .seealso: `DMPlexMetricIntersection2()`, `DMPlexMetricIntersection3()`, `DMPlexMetricAverage()` 1620cb7bfe8cSJoe Wallwork @*/ 1621d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricIntersection(DM dm, PetscInt numMetrics, Vec metrics[], Vec metricInt) 1622d71ae5a4SJacob Faibussowitsch { 162393520041SJoe Wallwork PetscBool isotropic, uniform; 162493520041SJoe Wallwork PetscInt v, i, m, n; 162593520041SJoe Wallwork PetscScalar *met, *meti; 162620282da2SJoe Wallwork 162720282da2SJoe Wallwork PetscFunctionBegin; 16289566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DMPLEX_MetricIntersection, 0, 0, 0, 0)); 162963a3b9bcSJacob Faibussowitsch PetscCheck(numMetrics >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot intersect %" PetscInt_FMT " < 1 metrics", numMetrics); 163020282da2SJoe Wallwork 163120282da2SJoe Wallwork /* Copy over the first metric */ 16325241a91fSJoe Wallwork PetscCall(VecCopy(metrics[0], metricInt)); 1633*3ba16761SJacob Faibussowitsch if (numMetrics == 1) PetscFunctionReturn(PETSC_SUCCESS); 16345241a91fSJoe Wallwork PetscCall(VecGetSize(metricInt, &m)); 163593520041SJoe Wallwork for (i = 0; i < numMetrics; ++i) { 16369566063dSJacob Faibussowitsch PetscCall(VecGetSize(metrics[i], &n)); 163708401ef6SPierre Jolivet PetscCheck(m == n, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Intersecting different metric types not implemented"); 163893520041SJoe Wallwork } 163920282da2SJoe Wallwork 164020282da2SJoe Wallwork /* Intersect subsequent metrics in turn */ 16419566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsUniform(dm, &uniform)); 16429566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIsIsotropic(dm, &isotropic)); 164393520041SJoe Wallwork if (uniform) { 164493520041SJoe Wallwork /* Uniform case */ 16455241a91fSJoe Wallwork PetscCall(VecGetArray(metricInt, &met)); 164693520041SJoe Wallwork for (i = 1; i < numMetrics; ++i) { 16479566063dSJacob Faibussowitsch PetscCall(VecGetArray(metrics[i], &meti)); 16489566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection_Private(1, meti, met)); 16499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(metrics[i], &meti)); 165093520041SJoe Wallwork } 16515241a91fSJoe Wallwork PetscCall(VecRestoreArray(metricInt, &met)); 165293520041SJoe Wallwork } else { 165393520041SJoe Wallwork /* Spatially varying case */ 165493520041SJoe Wallwork PetscInt dim, vStart, vEnd, nrow; 165593520041SJoe Wallwork PetscScalar *M, *Mi; 165693520041SJoe Wallwork 16579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 165893520041SJoe Wallwork if (isotropic) nrow = 1; 165993520041SJoe Wallwork else nrow = dim; 16609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 16615241a91fSJoe Wallwork PetscCall(VecGetArray(metricInt, &met)); 166220282da2SJoe Wallwork for (i = 1; i < numMetrics; ++i) { 16639566063dSJacob Faibussowitsch PetscCall(VecGetArray(metrics[i], &meti)); 166420282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 16659566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, met, &M)); 16669566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalRef(dm, v, meti, &Mi)); 16679566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection_Private(nrow, Mi, M)); 166820282da2SJoe Wallwork } 16699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(metrics[i], &meti)); 167020282da2SJoe Wallwork } 16715241a91fSJoe Wallwork PetscCall(VecRestoreArray(metricInt, &met)); 167220282da2SJoe Wallwork } 1673fe902aceSJoe Wallwork 16749566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DMPLEX_MetricIntersection, 0, 0, 0, 0)); 1675*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167620282da2SJoe Wallwork } 167720282da2SJoe Wallwork 1678cb7bfe8cSJoe Wallwork /*@ 167920282da2SJoe Wallwork DMPlexMetricIntersection2 - Compute the intersection of two metrics 168020282da2SJoe Wallwork 1681f1a722f8SMatthew G. Knepley Input Parameters: 168220282da2SJoe Wallwork + dm - The DM 168320282da2SJoe Wallwork . metric1 - The first metric to be intersected 168420282da2SJoe Wallwork - metric2 - The second metric to be intersected 168520282da2SJoe Wallwork 168620282da2SJoe Wallwork Output Parameter: 168720282da2SJoe Wallwork . metricInt - The intersected metric 168820282da2SJoe Wallwork 168920282da2SJoe Wallwork Level: beginner 169020282da2SJoe Wallwork 1691db781477SPatrick Sanan .seealso: `DMPlexMetricIntersection()`, `DMPlexMetricIntersection3()` 1692cb7bfe8cSJoe Wallwork @*/ 1693d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricIntersection2(DM dm, Vec metric1, Vec metric2, Vec metricInt) 1694d71ae5a4SJacob Faibussowitsch { 169520282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 169620282da2SJoe Wallwork 169720282da2SJoe Wallwork PetscFunctionBegin; 16989566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection(dm, 2, metrics, metricInt)); 1699*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 170020282da2SJoe Wallwork } 170120282da2SJoe Wallwork 1702cb7bfe8cSJoe Wallwork /*@ 170320282da2SJoe Wallwork DMPlexMetricIntersection3 - Compute the intersection of three metrics 170420282da2SJoe Wallwork 1705f1a722f8SMatthew G. Knepley Input Parameters: 170620282da2SJoe Wallwork + dm - The DM 170720282da2SJoe Wallwork . metric1 - The first metric to be intersected 170820282da2SJoe Wallwork . metric2 - The second metric to be intersected 170920282da2SJoe Wallwork - metric3 - The third metric to be intersected 171020282da2SJoe Wallwork 171120282da2SJoe Wallwork Output Parameter: 171220282da2SJoe Wallwork . metricInt - The intersected metric 171320282da2SJoe Wallwork 171420282da2SJoe Wallwork Level: beginner 171520282da2SJoe Wallwork 1716db781477SPatrick Sanan .seealso: `DMPlexMetricIntersection()`, `DMPlexMetricIntersection2()` 1717cb7bfe8cSJoe Wallwork @*/ 1718d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMetricIntersection3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec metricInt) 1719d71ae5a4SJacob Faibussowitsch { 172020282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 172120282da2SJoe Wallwork 172220282da2SJoe Wallwork PetscFunctionBegin; 17239566063dSJacob Faibussowitsch PetscCall(DMPlexMetricIntersection(dm, 3, metrics, metricInt)); 1724*3ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 172520282da2SJoe Wallwork } 1726