120282da2SJoe Wallwork #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 220282da2SJoe Wallwork #include <petscblaslapack.h> 320282da2SJoe Wallwork 431b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetFromOptions(DM dm) 531b70465SJoe Wallwork { 631b70465SJoe Wallwork MPI_Comm comm; 731b70465SJoe Wallwork PetscBool isotropic = PETSC_FALSE, restrictAnisotropyFirst = PETSC_FALSE; 8cc2eee55SJoe Wallwork PetscBool noInsert = PETSC_FALSE, noSwap = PETSC_FALSE, noMove = PETSC_FALSE; 931b70465SJoe Wallwork PetscErrorCode ierr; 10cc2eee55SJoe Wallwork PetscInt verbosity = -1, numIter = 3; 11cc2eee55SJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 1.0e+05, p = 1.0, target = 1000.0, beta = 1.3; 1231b70465SJoe Wallwork 1331b70465SJoe Wallwork PetscFunctionBegin; 1431b70465SJoe Wallwork ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 1531b70465SJoe Wallwork ierr = PetscOptionsBegin(comm, "", "Riemannian metric options", "DMPlexMetric");CHKERRQ(ierr); 1631b70465SJoe Wallwork ierr = PetscOptionsBool("-dm_plex_metric_isotropic", "Is the metric isotropic?", "DMPlexMetricCreateIsotropic", isotropic, &isotropic, NULL);CHKERRQ(ierr); 17cc2eee55SJoe Wallwork ierr = DMPlexMetricSetIsotropic(dm, isotropic);CHKERRQ(ierr); 1831b70465SJoe Wallwork ierr = PetscOptionsBool("-dm_plex_metric_restrict_anisotropy_first", "Should anisotropy be restricted before normalization?", "DMPlexNormalize", restrictAnisotropyFirst, &restrictAnisotropyFirst, NULL);CHKERRQ(ierr); 19cc2eee55SJoe Wallwork ierr = DMPlexMetricSetRestrictAnisotropyFirst(dm, restrictAnisotropyFirst);CHKERRQ(ierr); 20cc2eee55SJoe Wallwork ierr = PetscOptionsBool("-dm_plex_metric_no_insert", "Turn off node insertion and deletion", "DMAdaptMetric", noInsert, &noInsert, NULL);CHKERRQ(ierr); 21cc2eee55SJoe Wallwork ierr = DMPlexMetricSetNoInsertion(dm, noInsert);CHKERRQ(ierr); 22cc2eee55SJoe Wallwork ierr = PetscOptionsBool("-dm_plex_metric_no_swap", "Turn off facet swapping", "DMAdaptMetric", noSwap, &noSwap, NULL);CHKERRQ(ierr); 23cc2eee55SJoe Wallwork ierr = DMPlexMetricSetNoSwapping(dm, noSwap);CHKERRQ(ierr); 24cc2eee55SJoe Wallwork ierr = PetscOptionsBool("-dm_plex_metric_no_move", "Turn off facet node movement", "DMAdaptMetric", noMove, &noMove, NULL);CHKERRQ(ierr); 25cc2eee55SJoe Wallwork ierr = DMPlexMetricSetNoMovement(dm, noMove);CHKERRQ(ierr); 26cc2eee55SJoe Wallwork ierr = PetscOptionsBoundedInt("-dm_plex_metric_num_iterations", "Number of ParMmg adaptation iterations", "DMAdaptMetric", numIter, &numIter, NULL, 0);CHKERRQ(ierr); 27cc2eee55SJoe Wallwork ierr = DMPlexMetricSetNumIterations(dm, numIter);CHKERRQ(ierr); 28cc2eee55SJoe Wallwork ierr = PetscOptionsRangeInt("-dm_plex_metric_verbosity", "Verbosity of metric-based mesh adaptation package (-1 = silent, 10 = maximum)", "DMAdaptMetric", verbosity, &verbosity, NULL, -1, 10);CHKERRQ(ierr); 29cc2eee55SJoe Wallwork ierr = DMPlexMetricSetVerbosity(dm, verbosity);CHKERRQ(ierr); 3031b70465SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_h_min", "Minimum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_min, &h_min, NULL);CHKERRQ(ierr); 3131b70465SJoe Wallwork ierr = DMPlexMetricSetMinimumMagnitude(dm, h_min);CHKERRQ(ierr); 3231b70465SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_h_max", "Maximum tolerated metric magnitude", "DMPlexMetricEnforceSPD", h_max, &h_max, NULL);CHKERRQ(ierr); 3331b70465SJoe Wallwork ierr = DMPlexMetricSetMaximumMagnitude(dm, h_max);CHKERRQ(ierr); 3431b70465SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_a_max", "Maximum tolerated anisotropy", "DMPlexMetricEnforceSPD", a_max, &a_max, NULL);CHKERRQ(ierr); 3531b70465SJoe Wallwork ierr = DMPlexMetricSetMaximumAnisotropy(dm, a_max);CHKERRQ(ierr); 3631b70465SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_p", "L-p normalization order", "DMPlexMetricNormalize", p, &p, NULL);CHKERRQ(ierr); 3731b70465SJoe Wallwork ierr = DMPlexMetricSetNormalizationOrder(dm, p);CHKERRQ(ierr); 3831b70465SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_target_complexity", "Target metric complexity", "DMPlexMetricNormalize", target, &target, NULL);CHKERRQ(ierr); 3931b70465SJoe Wallwork ierr = DMPlexMetricSetTargetComplexity(dm, target);CHKERRQ(ierr); 40cc2eee55SJoe Wallwork ierr = PetscOptionsReal("-dm_plex_metric_gradation_factor", "Metric gradation factor", "DMAdaptMetric", beta, &beta, NULL);CHKERRQ(ierr); 41cc2eee55SJoe Wallwork ierr = DMPlexMetricSetGradationFactor(dm, beta);CHKERRQ(ierr); 4231b70465SJoe Wallwork ierr = PetscOptionsEnd();CHKERRQ(ierr); 4331b70465SJoe Wallwork PetscFunctionReturn(0); 4431b70465SJoe Wallwork } 4531b70465SJoe Wallwork 46*cb7bfe8cSJoe Wallwork /*@ 4731b70465SJoe Wallwork DMPlexMetricSetIsotropic - Record whether a metric is isotropic 4831b70465SJoe Wallwork 4931b70465SJoe Wallwork Input parameters: 5031b70465SJoe Wallwork + dm - The DM 5131b70465SJoe Wallwork - isotropic - Is the metric isotropic? 5231b70465SJoe Wallwork 5331b70465SJoe Wallwork Level: beginner 5431b70465SJoe Wallwork 5531b70465SJoe Wallwork .seealso: DMPlexMetricIsIsotropic(), DMPlexMetricSetRestrictAnisotropyFirst() 56*cb7bfe8cSJoe Wallwork @*/ 5731b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetIsotropic(DM dm, PetscBool isotropic) 5831b70465SJoe Wallwork { 5931b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 6031b70465SJoe Wallwork PetscErrorCode ierr; 6131b70465SJoe Wallwork 6231b70465SJoe Wallwork PetscFunctionBegin; 6331b70465SJoe Wallwork if (!plex->metricCtx) { 6431b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 6531b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 6631b70465SJoe Wallwork } 6731b70465SJoe Wallwork plex->metricCtx->isotropic = isotropic; 6831b70465SJoe Wallwork PetscFunctionReturn(0); 6931b70465SJoe Wallwork } 7031b70465SJoe Wallwork 71*cb7bfe8cSJoe Wallwork /*@ 7231b70465SJoe Wallwork DMPlexMetricIsIsotropic - Is a metric is isotropic? 7331b70465SJoe Wallwork 7431b70465SJoe Wallwork Input parameters: 7531b70465SJoe Wallwork . dm - The DM 7631b70465SJoe Wallwork 7731b70465SJoe Wallwork Output parameters: 7831b70465SJoe Wallwork . isotropic - Is the metric isotropic? 7931b70465SJoe Wallwork 8031b70465SJoe Wallwork Level: beginner 8131b70465SJoe Wallwork 8231b70465SJoe Wallwork .seealso: DMPlexMetricSetIsotropic(), DMPlexMetricRestrictAnisotropyFirst() 83*cb7bfe8cSJoe Wallwork @*/ 8431b70465SJoe Wallwork PetscErrorCode DMPlexMetricIsIsotropic(DM dm, PetscBool *isotropic) 8531b70465SJoe Wallwork { 8631b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 8731b70465SJoe Wallwork PetscErrorCode ierr; 8831b70465SJoe Wallwork 8931b70465SJoe Wallwork PetscFunctionBegin; 9031b70465SJoe Wallwork if (!plex->metricCtx) { 9131b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 9231b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 9331b70465SJoe Wallwork } 9431b70465SJoe Wallwork *isotropic = plex->metricCtx->isotropic; 9531b70465SJoe Wallwork PetscFunctionReturn(0); 9631b70465SJoe Wallwork } 9731b70465SJoe Wallwork 98*cb7bfe8cSJoe Wallwork /*@ 9931b70465SJoe Wallwork DMPlexMetricSetRestrictAnisotropyFirst - Record whether anisotropy should be restricted before normalization 10031b70465SJoe Wallwork 10131b70465SJoe Wallwork Input parameters: 10231b70465SJoe Wallwork + dm - The DM 10331b70465SJoe Wallwork - restrictAnisotropyFirst - Should anisotropy be normalized first? 10431b70465SJoe Wallwork 10531b70465SJoe Wallwork Level: beginner 10631b70465SJoe Wallwork 10731b70465SJoe Wallwork .seealso: DMPlexMetricSetIsotropic(), DMPlexMetricRestrictAnisotropyFirst() 108*cb7bfe8cSJoe Wallwork @*/ 10931b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetRestrictAnisotropyFirst(DM dm, PetscBool restrictAnisotropyFirst) 11031b70465SJoe Wallwork { 11131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 11231b70465SJoe Wallwork PetscErrorCode ierr; 11331b70465SJoe Wallwork 11431b70465SJoe Wallwork PetscFunctionBegin; 11531b70465SJoe Wallwork if (!plex->metricCtx) { 11631b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 11731b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 11831b70465SJoe Wallwork } 11931b70465SJoe Wallwork plex->metricCtx->restrictAnisotropyFirst = restrictAnisotropyFirst; 12031b70465SJoe Wallwork PetscFunctionReturn(0); 12131b70465SJoe Wallwork } 12231b70465SJoe Wallwork 123*cb7bfe8cSJoe Wallwork /*@ 12431b70465SJoe Wallwork DMPlexMetricRestrictAnisotropyFirst - Is anisotropy restricted before normalization or after? 12531b70465SJoe Wallwork 12631b70465SJoe Wallwork Input parameters: 12731b70465SJoe Wallwork . dm - The DM 12831b70465SJoe Wallwork 12931b70465SJoe Wallwork Output parameters: 13031b70465SJoe Wallwork . restrictAnisotropyFirst - Is anisotropy be normalized first? 13131b70465SJoe Wallwork 13231b70465SJoe Wallwork Level: beginner 13331b70465SJoe Wallwork 13431b70465SJoe Wallwork .seealso: DMPlexMetricIsIsotropic(), DMPlexMetricSetRestrictAnisotropyFirst() 135*cb7bfe8cSJoe Wallwork @*/ 13631b70465SJoe Wallwork PetscErrorCode DMPlexMetricRestrictAnisotropyFirst(DM dm, PetscBool *restrictAnisotropyFirst) 13731b70465SJoe Wallwork { 13831b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 13931b70465SJoe Wallwork PetscErrorCode ierr; 14031b70465SJoe Wallwork 14131b70465SJoe Wallwork PetscFunctionBegin; 14231b70465SJoe Wallwork if (!plex->metricCtx) { 14331b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 14431b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 14531b70465SJoe Wallwork } 14631b70465SJoe Wallwork *restrictAnisotropyFirst = plex->metricCtx->restrictAnisotropyFirst; 14731b70465SJoe Wallwork PetscFunctionReturn(0); 14831b70465SJoe Wallwork } 14931b70465SJoe Wallwork 150*cb7bfe8cSJoe Wallwork /*@ 151cc2eee55SJoe Wallwork DMPlexMetricSetNoInsertion - Should node insertion and deletion be turned off? 152cc2eee55SJoe Wallwork 153cc2eee55SJoe Wallwork Input parameters: 154cc2eee55SJoe Wallwork + dm - The DM 155cc2eee55SJoe Wallwork - noInsert - Should node insertion and deletion be turned off? 156cc2eee55SJoe Wallwork 157cc2eee55SJoe Wallwork Level: beginner 158cc2eee55SJoe Wallwork 159*cb7bfe8cSJoe Wallwork Notes: 160*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 161*cb7bfe8cSJoe Wallwork 162cc2eee55SJoe Wallwork .seealso: DMPlexMetricNoInsertion(), DMPlexMetricSetNoSwapping(), DMPlexMetricSetNoMovement() 163*cb7bfe8cSJoe Wallwork @*/ 164cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoInsertion(DM dm, PetscBool noInsert) 165cc2eee55SJoe Wallwork { 166cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 167cc2eee55SJoe Wallwork PetscErrorCode ierr; 168cc2eee55SJoe Wallwork 169cc2eee55SJoe Wallwork PetscFunctionBegin; 170cc2eee55SJoe Wallwork if (!plex->metricCtx) { 171cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 172cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 173cc2eee55SJoe Wallwork } 174cc2eee55SJoe Wallwork plex->metricCtx->noInsert = noInsert; 175cc2eee55SJoe Wallwork PetscFunctionReturn(0); 176cc2eee55SJoe Wallwork } 177cc2eee55SJoe Wallwork 178*cb7bfe8cSJoe Wallwork /*@ 179cc2eee55SJoe Wallwork DMPlexMetricNoInsertion - Are node insertion and deletion turned off? 180cc2eee55SJoe Wallwork 181cc2eee55SJoe Wallwork Input parameters: 182cc2eee55SJoe Wallwork . dm - The DM 183cc2eee55SJoe Wallwork 184cc2eee55SJoe Wallwork Output parameters: 185cc2eee55SJoe Wallwork . noInsert - Are node insertion and deletion turned off? 186cc2eee55SJoe Wallwork 187cc2eee55SJoe Wallwork Level: beginner 188cc2eee55SJoe Wallwork 189*cb7bfe8cSJoe Wallwork Notes: 190*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 191*cb7bfe8cSJoe Wallwork 192cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetNoInsertion(), DMPlexMetricNoSwapping(), DMPlexMetricNoMovement() 193*cb7bfe8cSJoe Wallwork @*/ 194cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoInsertion(DM dm, PetscBool *noInsert) 195cc2eee55SJoe Wallwork { 196cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 197cc2eee55SJoe Wallwork PetscErrorCode ierr; 198cc2eee55SJoe Wallwork 199cc2eee55SJoe Wallwork PetscFunctionBegin; 200cc2eee55SJoe Wallwork if (!plex->metricCtx) { 201cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 202cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 203cc2eee55SJoe Wallwork } 204cc2eee55SJoe Wallwork *noInsert = plex->metricCtx->noInsert; 205cc2eee55SJoe Wallwork PetscFunctionReturn(0); 206cc2eee55SJoe Wallwork } 207cc2eee55SJoe Wallwork 208*cb7bfe8cSJoe Wallwork /*@ 209cc2eee55SJoe Wallwork DMPlexMetricSetNoSwapping - Should facet swapping be turned off? 210cc2eee55SJoe Wallwork 211cc2eee55SJoe Wallwork Input parameters: 212cc2eee55SJoe Wallwork + dm - The DM 213cc2eee55SJoe Wallwork - noSwap - Should facet swapping be turned off? 214cc2eee55SJoe Wallwork 215cc2eee55SJoe Wallwork Level: beginner 216cc2eee55SJoe Wallwork 217*cb7bfe8cSJoe Wallwork Notes: 218*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 219*cb7bfe8cSJoe Wallwork 220cc2eee55SJoe Wallwork .seealso: DMPlexMetricNoSwapping(), DMPlexMetricSetNoInsertion(), DMPlexMetricSetNoMovement() 221*cb7bfe8cSJoe Wallwork @*/ 222cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoSwapping(DM dm, PetscBool noSwap) 223cc2eee55SJoe Wallwork { 224cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 225cc2eee55SJoe Wallwork PetscErrorCode ierr; 226cc2eee55SJoe Wallwork 227cc2eee55SJoe Wallwork PetscFunctionBegin; 228cc2eee55SJoe Wallwork if (!plex->metricCtx) { 229cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 230cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 231cc2eee55SJoe Wallwork } 232cc2eee55SJoe Wallwork plex->metricCtx->noSwap = noSwap; 233cc2eee55SJoe Wallwork PetscFunctionReturn(0); 234cc2eee55SJoe Wallwork } 235cc2eee55SJoe Wallwork 236*cb7bfe8cSJoe Wallwork /*@ 237cc2eee55SJoe Wallwork DMPlexMetricNoSwapping - Is facet swapping turned off? 238cc2eee55SJoe Wallwork 239cc2eee55SJoe Wallwork Input parameters: 240cc2eee55SJoe Wallwork . dm - The DM 241cc2eee55SJoe Wallwork 242cc2eee55SJoe Wallwork Output parameters: 243cc2eee55SJoe Wallwork . noSwap - Is facet swapping turned off? 244cc2eee55SJoe Wallwork 245cc2eee55SJoe Wallwork Level: beginner 246cc2eee55SJoe Wallwork 247*cb7bfe8cSJoe Wallwork Notes: 248*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 249*cb7bfe8cSJoe Wallwork 250cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetNoSwapping(), DMPlexMetricNoInsertion(), DMPlexMetricNoMovement() 251*cb7bfe8cSJoe Wallwork @*/ 252cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoSwapping(DM dm, PetscBool *noSwap) 253cc2eee55SJoe Wallwork { 254cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 255cc2eee55SJoe Wallwork PetscErrorCode ierr; 256cc2eee55SJoe Wallwork 257cc2eee55SJoe Wallwork PetscFunctionBegin; 258cc2eee55SJoe Wallwork if (!plex->metricCtx) { 259cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 260cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 261cc2eee55SJoe Wallwork } 262cc2eee55SJoe Wallwork *noSwap = plex->metricCtx->noSwap; 263cc2eee55SJoe Wallwork PetscFunctionReturn(0); 264cc2eee55SJoe Wallwork } 265cc2eee55SJoe Wallwork 266*cb7bfe8cSJoe Wallwork /*@ 267cc2eee55SJoe Wallwork DMPlexMetricSetNoMovement - Should node movement be turned off? 268cc2eee55SJoe Wallwork 269cc2eee55SJoe Wallwork Input parameters: 270cc2eee55SJoe Wallwork + dm - The DM 271cc2eee55SJoe Wallwork - noMove - Should node movement be turned off? 272cc2eee55SJoe Wallwork 273cc2eee55SJoe Wallwork Level: beginner 274cc2eee55SJoe Wallwork 275*cb7bfe8cSJoe Wallwork Notes: 276*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 277*cb7bfe8cSJoe Wallwork 278cc2eee55SJoe Wallwork .seealso: DMPlexMetricNoMovement(), DMPlexMetricSetNoInsertion(), DMPlexMetricSetNoSwapping() 279*cb7bfe8cSJoe Wallwork @*/ 280cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNoMovement(DM dm, PetscBool noMove) 281cc2eee55SJoe Wallwork { 282cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 283cc2eee55SJoe Wallwork PetscErrorCode ierr; 284cc2eee55SJoe Wallwork 285cc2eee55SJoe Wallwork PetscFunctionBegin; 286cc2eee55SJoe Wallwork if (!plex->metricCtx) { 287cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 288cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 289cc2eee55SJoe Wallwork } 290cc2eee55SJoe Wallwork plex->metricCtx->noMove = noMove; 291cc2eee55SJoe Wallwork PetscFunctionReturn(0); 292cc2eee55SJoe Wallwork } 293cc2eee55SJoe Wallwork 294*cb7bfe8cSJoe Wallwork /*@ 295cc2eee55SJoe Wallwork DMPlexMetricNoMovement - Is node movement turned off? 296cc2eee55SJoe Wallwork 297cc2eee55SJoe Wallwork Input parameters: 298cc2eee55SJoe Wallwork . dm - The DM 299cc2eee55SJoe Wallwork 300cc2eee55SJoe Wallwork Output parameters: 301cc2eee55SJoe Wallwork . noMove - Is node movement turned off? 302cc2eee55SJoe Wallwork 303cc2eee55SJoe Wallwork Level: beginner 304cc2eee55SJoe Wallwork 305*cb7bfe8cSJoe Wallwork Notes: 306*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 307*cb7bfe8cSJoe Wallwork 308cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetNoMovement(), DMPlexMetricNoInsertion(), DMPlexMetricNoSwapping() 309*cb7bfe8cSJoe Wallwork @*/ 310cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricNoMovement(DM dm, PetscBool *noMove) 311cc2eee55SJoe Wallwork { 312cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 313cc2eee55SJoe Wallwork PetscErrorCode ierr; 314cc2eee55SJoe Wallwork 315cc2eee55SJoe Wallwork PetscFunctionBegin; 316cc2eee55SJoe Wallwork if (!plex->metricCtx) { 317cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 318cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 319cc2eee55SJoe Wallwork } 320cc2eee55SJoe Wallwork *noMove = plex->metricCtx->noMove; 321cc2eee55SJoe Wallwork PetscFunctionReturn(0); 322cc2eee55SJoe Wallwork } 323cc2eee55SJoe Wallwork 324*cb7bfe8cSJoe Wallwork /*@ 32531b70465SJoe Wallwork DMPlexMetricSetMinimumMagnitude - Set the minimum tolerated metric magnitude 32631b70465SJoe Wallwork 32731b70465SJoe Wallwork Input parameters: 32831b70465SJoe Wallwork + dm - The DM 32931b70465SJoe Wallwork - h_min - The minimum tolerated metric magnitude 33031b70465SJoe Wallwork 33131b70465SJoe Wallwork Level: beginner 33231b70465SJoe Wallwork 33331b70465SJoe Wallwork .seealso: DMPlexMetricGetMinimumMagnitude(), DMPlexMetricSetMaximumMagnitude() 334*cb7bfe8cSJoe Wallwork @*/ 33531b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMinimumMagnitude(DM dm, PetscReal h_min) 33631b70465SJoe Wallwork { 33731b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 33831b70465SJoe Wallwork PetscErrorCode ierr; 33931b70465SJoe Wallwork 34031b70465SJoe Wallwork PetscFunctionBegin; 34131b70465SJoe Wallwork if (!plex->metricCtx) { 34231b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 34331b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 34431b70465SJoe Wallwork } 34531b70465SJoe Wallwork if (h_min <= 0.0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Metric magnitudes must be positive, not %.4e", h_min); 34631b70465SJoe Wallwork plex->metricCtx->h_min = h_min; 34731b70465SJoe Wallwork PetscFunctionReturn(0); 34831b70465SJoe Wallwork } 34931b70465SJoe Wallwork 350*cb7bfe8cSJoe Wallwork /*@ 35131b70465SJoe Wallwork DMPlexMetricGetMinimumMagnitude - Get the minimum tolerated metric magnitude 35231b70465SJoe Wallwork 35331b70465SJoe Wallwork Input parameters: 35431b70465SJoe Wallwork . dm - The DM 35531b70465SJoe Wallwork 356cc2eee55SJoe Wallwork Output parameters: 35731b70465SJoe Wallwork . h_min - The minimum tolerated metric magnitude 35831b70465SJoe Wallwork 35931b70465SJoe Wallwork Level: beginner 36031b70465SJoe Wallwork 36131b70465SJoe Wallwork .seealso: DMPlexMetricSetMinimumMagnitude(), DMPlexMetricGetMaximumMagnitude() 362*cb7bfe8cSJoe Wallwork @*/ 36331b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMinimumMagnitude(DM dm, PetscReal *h_min) 36431b70465SJoe Wallwork { 36531b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 36631b70465SJoe Wallwork PetscErrorCode ierr; 36731b70465SJoe Wallwork 36831b70465SJoe Wallwork PetscFunctionBegin; 36931b70465SJoe Wallwork if (!plex->metricCtx) { 37031b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 37131b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 37231b70465SJoe Wallwork } 37331b70465SJoe Wallwork *h_min = plex->metricCtx->h_min; 37431b70465SJoe Wallwork PetscFunctionReturn(0); 37531b70465SJoe Wallwork } 37631b70465SJoe Wallwork 377*cb7bfe8cSJoe Wallwork /*@ 37831b70465SJoe Wallwork DMPlexMetricSetMaximumMagnitude - Set the maximum tolerated metric magnitude 37931b70465SJoe Wallwork 38031b70465SJoe Wallwork Input parameters: 38131b70465SJoe Wallwork + dm - The DM 38231b70465SJoe Wallwork - h_max - The maximum tolerated metric magnitude 38331b70465SJoe Wallwork 38431b70465SJoe Wallwork Level: beginner 38531b70465SJoe Wallwork 38631b70465SJoe Wallwork .seealso: DMPlexMetricGetMaximumMagnitude(), DMPlexMetricSetMinimumMagnitude() 387*cb7bfe8cSJoe Wallwork @*/ 38831b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMaximumMagnitude(DM dm, PetscReal h_max) 38931b70465SJoe Wallwork { 39031b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 39131b70465SJoe Wallwork PetscErrorCode ierr; 39231b70465SJoe Wallwork 39331b70465SJoe Wallwork PetscFunctionBegin; 39431b70465SJoe Wallwork if (!plex->metricCtx) { 39531b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 39631b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 39731b70465SJoe Wallwork } 39831b70465SJoe Wallwork if (h_max <= 0.0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Metric magnitudes must be positive, not %.4e", h_max); 39931b70465SJoe Wallwork plex->metricCtx->h_max = h_max; 40031b70465SJoe Wallwork PetscFunctionReturn(0); 40131b70465SJoe Wallwork } 40231b70465SJoe Wallwork 403*cb7bfe8cSJoe Wallwork /*@ 40431b70465SJoe Wallwork DMPlexMetricGetMaximumMagnitude - Get the maximum tolerated metric magnitude 40531b70465SJoe Wallwork 40631b70465SJoe Wallwork Input parameters: 40731b70465SJoe Wallwork . dm - The DM 40831b70465SJoe Wallwork 409cc2eee55SJoe Wallwork Output parameters: 41031b70465SJoe Wallwork . h_max - The maximum tolerated metric magnitude 41131b70465SJoe Wallwork 41231b70465SJoe Wallwork Level: beginner 41331b70465SJoe Wallwork 41431b70465SJoe Wallwork .seealso: DMPlexMetricSetMaximumMagnitude(), DMPlexMetricGetMinimumMagnitude() 415*cb7bfe8cSJoe Wallwork @*/ 41631b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMaximumMagnitude(DM dm, PetscReal *h_max) 41731b70465SJoe Wallwork { 41831b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 41931b70465SJoe Wallwork PetscErrorCode ierr; 42031b70465SJoe Wallwork 42131b70465SJoe Wallwork PetscFunctionBegin; 42231b70465SJoe Wallwork if (!plex->metricCtx) { 42331b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 42431b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 42531b70465SJoe Wallwork } 42631b70465SJoe Wallwork *h_max = plex->metricCtx->h_max; 42731b70465SJoe Wallwork PetscFunctionReturn(0); 42831b70465SJoe Wallwork } 42931b70465SJoe Wallwork 430*cb7bfe8cSJoe Wallwork /*@ 43131b70465SJoe Wallwork DMPlexMetricSetMaximumAnisotropy - Set the maximum tolerated metric anisotropy 43231b70465SJoe Wallwork 43331b70465SJoe Wallwork Input parameters: 43431b70465SJoe Wallwork + dm - The DM 43531b70465SJoe Wallwork - a_max - The maximum tolerated metric anisotropy 43631b70465SJoe Wallwork 43731b70465SJoe Wallwork Level: beginner 43831b70465SJoe Wallwork 43931b70465SJoe Wallwork Note: If the value zero is given then anisotropy will not be restricted. Otherwise, it should be at least one. 44031b70465SJoe Wallwork 44131b70465SJoe Wallwork .seealso: DMPlexMetricGetMaximumAnisotropy(), DMPlexMetricSetMaximumMagnitude() 442*cb7bfe8cSJoe Wallwork @*/ 44331b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetMaximumAnisotropy(DM dm, PetscReal a_max) 44431b70465SJoe Wallwork { 44531b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 44631b70465SJoe Wallwork PetscErrorCode ierr; 44731b70465SJoe Wallwork 44831b70465SJoe Wallwork PetscFunctionBegin; 44931b70465SJoe Wallwork if (!plex->metricCtx) { 45031b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 45131b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 45231b70465SJoe Wallwork } 45331b70465SJoe Wallwork if (a_max < 1.0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Anisotropy must be at least one, not %.4e", a_max); 45431b70465SJoe Wallwork plex->metricCtx->a_max = a_max; 45531b70465SJoe Wallwork PetscFunctionReturn(0); 45631b70465SJoe Wallwork } 45731b70465SJoe Wallwork 458*cb7bfe8cSJoe Wallwork /*@ 45931b70465SJoe Wallwork DMPlexMetricGetMaximumAnisotropy - Get the maximum tolerated metric anisotropy 46031b70465SJoe Wallwork 46131b70465SJoe Wallwork Input parameters: 46231b70465SJoe Wallwork . dm - The DM 46331b70465SJoe Wallwork 464cc2eee55SJoe Wallwork Output parameters: 46531b70465SJoe Wallwork . a_max - The maximum tolerated metric anisotropy 46631b70465SJoe Wallwork 46731b70465SJoe Wallwork Level: beginner 46831b70465SJoe Wallwork 46931b70465SJoe Wallwork .seealso: DMPlexMetricSetMaximumAnisotropy(), DMPlexMetricGetMaximumMagnitude() 470*cb7bfe8cSJoe Wallwork @*/ 47131b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetMaximumAnisotropy(DM dm, PetscReal *a_max) 47231b70465SJoe Wallwork { 47331b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 47431b70465SJoe Wallwork PetscErrorCode ierr; 47531b70465SJoe Wallwork 47631b70465SJoe Wallwork PetscFunctionBegin; 47731b70465SJoe Wallwork if (!plex->metricCtx) { 47831b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 47931b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 48031b70465SJoe Wallwork } 48131b70465SJoe Wallwork *a_max = plex->metricCtx->a_max; 48231b70465SJoe Wallwork PetscFunctionReturn(0); 48331b70465SJoe Wallwork } 48431b70465SJoe Wallwork 485*cb7bfe8cSJoe Wallwork /*@ 48631b70465SJoe Wallwork DMPlexMetricSetTargetComplexity - Set the target metric complexity 48731b70465SJoe Wallwork 48831b70465SJoe Wallwork Input parameters: 48931b70465SJoe Wallwork + dm - The DM 49031b70465SJoe Wallwork - targetComplexity - The target metric complexity 49131b70465SJoe Wallwork 49231b70465SJoe Wallwork Level: beginner 49331b70465SJoe Wallwork 49431b70465SJoe Wallwork .seealso: DMPlexMetricGetTargetComplexity(), DMPlexMetricSetNormalizationOrder() 495*cb7bfe8cSJoe Wallwork @*/ 49631b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetTargetComplexity(DM dm, PetscReal targetComplexity) 49731b70465SJoe Wallwork { 49831b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 49931b70465SJoe Wallwork PetscErrorCode ierr; 50031b70465SJoe Wallwork 50131b70465SJoe Wallwork PetscFunctionBegin; 50231b70465SJoe Wallwork if (!plex->metricCtx) { 50331b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 50431b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 50531b70465SJoe Wallwork } 50631b70465SJoe Wallwork if (targetComplexity <= 0.0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Metric complexity must be positive"); 50731b70465SJoe Wallwork plex->metricCtx->targetComplexity = targetComplexity; 50831b70465SJoe Wallwork PetscFunctionReturn(0); 50931b70465SJoe Wallwork } 51031b70465SJoe Wallwork 511*cb7bfe8cSJoe Wallwork /*@ 51231b70465SJoe Wallwork DMPlexMetricGetTargetComplexity - Get the target metric complexity 51331b70465SJoe Wallwork 51431b70465SJoe Wallwork Input parameters: 51531b70465SJoe Wallwork . dm - The DM 51631b70465SJoe Wallwork 517cc2eee55SJoe Wallwork Output parameters: 51831b70465SJoe Wallwork . targetComplexity - The target metric complexity 51931b70465SJoe Wallwork 52031b70465SJoe Wallwork Level: beginner 52131b70465SJoe Wallwork 52231b70465SJoe Wallwork .seealso: DMPlexMetricSetTargetComplexity(), DMPlexMetricGetNormalizationOrder() 523*cb7bfe8cSJoe Wallwork @*/ 52431b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetTargetComplexity(DM dm, PetscReal *targetComplexity) 52531b70465SJoe Wallwork { 52631b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 52731b70465SJoe Wallwork PetscErrorCode ierr; 52831b70465SJoe Wallwork 52931b70465SJoe Wallwork PetscFunctionBegin; 53031b70465SJoe Wallwork if (!plex->metricCtx) { 53131b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 53231b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 53331b70465SJoe Wallwork } 53431b70465SJoe Wallwork *targetComplexity = plex->metricCtx->targetComplexity; 53531b70465SJoe Wallwork PetscFunctionReturn(0); 53631b70465SJoe Wallwork } 53731b70465SJoe Wallwork 538*cb7bfe8cSJoe Wallwork /*@ 53931b70465SJoe Wallwork DMPlexMetricSetNormalizationOrder - Set the order p for L-p normalization 54031b70465SJoe Wallwork 54131b70465SJoe Wallwork Input parameters: 54231b70465SJoe Wallwork + dm - The DM 54331b70465SJoe Wallwork - p - The normalization order 54431b70465SJoe Wallwork 54531b70465SJoe Wallwork Level: beginner 54631b70465SJoe Wallwork 54731b70465SJoe Wallwork .seealso: DMPlexMetricGetNormalizationOrder(), DMPlexMetricSetTargetComplexity() 548*cb7bfe8cSJoe Wallwork @*/ 54931b70465SJoe Wallwork PetscErrorCode DMPlexMetricSetNormalizationOrder(DM dm, PetscReal p) 55031b70465SJoe Wallwork { 55131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 55231b70465SJoe Wallwork PetscErrorCode ierr; 55331b70465SJoe Wallwork 55431b70465SJoe Wallwork PetscFunctionBegin; 55531b70465SJoe Wallwork if (!plex->metricCtx) { 55631b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 55731b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 55831b70465SJoe Wallwork } 55931b70465SJoe Wallwork if (p < 1.0) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Normalization order must be one or greater"); 56031b70465SJoe Wallwork plex->metricCtx->p = p; 56131b70465SJoe Wallwork PetscFunctionReturn(0); 56231b70465SJoe Wallwork } 56331b70465SJoe Wallwork 564*cb7bfe8cSJoe Wallwork /*@ 56531b70465SJoe Wallwork DMPlexMetricGetNormalizationOrder - Get the order p for L-p normalization 56631b70465SJoe Wallwork 56731b70465SJoe Wallwork Input parameters: 56831b70465SJoe Wallwork . dm - The DM 56931b70465SJoe Wallwork 570cc2eee55SJoe Wallwork Output parameters: 57131b70465SJoe Wallwork . p - The normalization order 57231b70465SJoe Wallwork 57331b70465SJoe Wallwork Level: beginner 57431b70465SJoe Wallwork 57531b70465SJoe Wallwork .seealso: DMPlexMetricSetNormalizationOrder(), DMPlexMetricGetTargetComplexity() 576*cb7bfe8cSJoe Wallwork @*/ 57731b70465SJoe Wallwork PetscErrorCode DMPlexMetricGetNormalizationOrder(DM dm, PetscReal *p) 57831b70465SJoe Wallwork { 57931b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 58031b70465SJoe Wallwork PetscErrorCode ierr; 58131b70465SJoe Wallwork 58231b70465SJoe Wallwork PetscFunctionBegin; 58331b70465SJoe Wallwork if (!plex->metricCtx) { 58431b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 58531b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 58631b70465SJoe Wallwork } 58731b70465SJoe Wallwork *p = plex->metricCtx->p; 58831b70465SJoe Wallwork PetscFunctionReturn(0); 58931b70465SJoe Wallwork } 59031b70465SJoe Wallwork 591*cb7bfe8cSJoe Wallwork /*@ 592cc2eee55SJoe Wallwork DMPlexMetricSetGradationFactor - Set the metric gradation factor 593cc2eee55SJoe Wallwork 594cc2eee55SJoe Wallwork Input parameters: 595cc2eee55SJoe Wallwork + dm - The DM 596cc2eee55SJoe Wallwork - beta - The metric gradation factor 597cc2eee55SJoe Wallwork 598cc2eee55SJoe Wallwork Level: beginner 599cc2eee55SJoe Wallwork 600cc2eee55SJoe Wallwork Notes: 601cc2eee55SJoe Wallwork 602cc2eee55SJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 603cc2eee55SJoe Wallwork 604cc2eee55SJoe Wallwork Turn off gradation by passing the value -1. Otherwise, pass a positive value. 605cc2eee55SJoe Wallwork 606*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 607*cb7bfe8cSJoe Wallwork 608cc2eee55SJoe Wallwork .seealso: DMPlexMetricGetGradationFactor() 609*cb7bfe8cSJoe Wallwork @*/ 610cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetGradationFactor(DM dm, PetscReal beta) 611cc2eee55SJoe Wallwork { 612cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 613cc2eee55SJoe Wallwork PetscErrorCode ierr; 614cc2eee55SJoe Wallwork 615cc2eee55SJoe Wallwork PetscFunctionBegin; 616cc2eee55SJoe Wallwork if (!plex->metricCtx) { 617cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 618cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 619cc2eee55SJoe Wallwork } 620cc2eee55SJoe Wallwork plex->metricCtx->gradationFactor = beta; 621cc2eee55SJoe Wallwork PetscFunctionReturn(0); 622cc2eee55SJoe Wallwork } 623cc2eee55SJoe Wallwork 624*cb7bfe8cSJoe Wallwork /*@ 625cc2eee55SJoe Wallwork DMPlexMetricGetGradationFactor - Get the metric gradation factor 626cc2eee55SJoe Wallwork 627cc2eee55SJoe Wallwork Input parameters: 628cc2eee55SJoe Wallwork . dm - The DM 629cc2eee55SJoe Wallwork 630cc2eee55SJoe Wallwork Output parameters: 631cc2eee55SJoe Wallwork . beta - The metric gradation factor 632cc2eee55SJoe Wallwork 633cc2eee55SJoe Wallwork Level: beginner 634cc2eee55SJoe Wallwork 635*cb7bfe8cSJoe Wallwork Notes: 636*cb7bfe8cSJoe Wallwork 637*cb7bfe8cSJoe Wallwork The gradation factor is the maximum tolerated length ratio between adjacent edges. 638*cb7bfe8cSJoe Wallwork 639*cb7bfe8cSJoe Wallwork The value -1 implies that gradation is turned off. 640*cb7bfe8cSJoe Wallwork 641*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 642cc2eee55SJoe Wallwork 643cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetGradationFactor() 644*cb7bfe8cSJoe Wallwork @*/ 645cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetGradationFactor(DM dm, PetscReal *beta) 646cc2eee55SJoe Wallwork { 647cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 648cc2eee55SJoe Wallwork PetscErrorCode ierr; 649cc2eee55SJoe Wallwork 650cc2eee55SJoe Wallwork PetscFunctionBegin; 651cc2eee55SJoe Wallwork if (!plex->metricCtx) { 652cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 653cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 654cc2eee55SJoe Wallwork } 655cc2eee55SJoe Wallwork *beta = plex->metricCtx->gradationFactor; 656cc2eee55SJoe Wallwork PetscFunctionReturn(0); 657cc2eee55SJoe Wallwork } 658cc2eee55SJoe Wallwork 659*cb7bfe8cSJoe Wallwork /*@ 660cc2eee55SJoe Wallwork DMPlexMetricSetVerbosity - Set the verbosity of the mesh adaptation package 661cc2eee55SJoe Wallwork 662cc2eee55SJoe Wallwork Input parameters: 663cc2eee55SJoe Wallwork + dm - The DM 664cc2eee55SJoe Wallwork - verbosity - The verbosity, where -1 is silent and 10 is maximum 665cc2eee55SJoe Wallwork 666*cb7bfe8cSJoe Wallwork Level: beginner 667*cb7bfe8cSJoe Wallwork 668*cb7bfe8cSJoe Wallwork Notes: 669*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 670*cb7bfe8cSJoe Wallwork 671cc2eee55SJoe Wallwork .seealso: DMPlexMetricGetVerbosity(), DMPlexMetricSetNumIterations() 672*cb7bfe8cSJoe Wallwork @*/ 673cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetVerbosity(DM dm, PetscInt verbosity) 674cc2eee55SJoe Wallwork { 675cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 676cc2eee55SJoe Wallwork PetscErrorCode ierr; 677cc2eee55SJoe Wallwork 678cc2eee55SJoe Wallwork PetscFunctionBegin; 679cc2eee55SJoe Wallwork if (!plex->metricCtx) { 680cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 681cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 682cc2eee55SJoe Wallwork } 683cc2eee55SJoe Wallwork plex->metricCtx->verbosity = verbosity; 684cc2eee55SJoe Wallwork PetscFunctionReturn(0); 685cc2eee55SJoe Wallwork } 686cc2eee55SJoe Wallwork 687*cb7bfe8cSJoe Wallwork /*@ 688cc2eee55SJoe Wallwork DMPlexMetricGetVerbosity - Get the verbosity of the mesh adaptation package 689cc2eee55SJoe Wallwork 690cc2eee55SJoe Wallwork Input parameters: 691cc2eee55SJoe Wallwork . dm - The DM 692cc2eee55SJoe Wallwork 693cc2eee55SJoe Wallwork Output parameters: 694cc2eee55SJoe Wallwork . verbosity - The verbosity, where -1 is silent and 10 is maximum 695cc2eee55SJoe Wallwork 696*cb7bfe8cSJoe Wallwork Level: beginner 697*cb7bfe8cSJoe Wallwork 698*cb7bfe8cSJoe Wallwork Notes: 699*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic). 700*cb7bfe8cSJoe Wallwork 701cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetVerbosity(), DMPlexMetricGetNumIterations() 702*cb7bfe8cSJoe Wallwork @*/ 703cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetVerbosity(DM dm, PetscInt *verbosity) 704cc2eee55SJoe Wallwork { 705cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 706cc2eee55SJoe Wallwork PetscErrorCode ierr; 707cc2eee55SJoe Wallwork 708cc2eee55SJoe Wallwork PetscFunctionBegin; 709cc2eee55SJoe Wallwork if (!plex->metricCtx) { 710cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 711cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 712cc2eee55SJoe Wallwork } 713cc2eee55SJoe Wallwork *verbosity = plex->metricCtx->verbosity; 714cc2eee55SJoe Wallwork PetscFunctionReturn(0); 715cc2eee55SJoe Wallwork } 716cc2eee55SJoe Wallwork 717*cb7bfe8cSJoe Wallwork /*@ 718cc2eee55SJoe Wallwork DMPlexMetricSetNumIterations - Set the number of parallel adaptation iterations 719cc2eee55SJoe Wallwork 720cc2eee55SJoe Wallwork Input parameters: 721cc2eee55SJoe Wallwork + dm - The DM 722cc2eee55SJoe Wallwork - numIter - the number of parallel adaptation iterations 723cc2eee55SJoe Wallwork 724*cb7bfe8cSJoe Wallwork Level: beginner 725*cb7bfe8cSJoe Wallwork 726*cb7bfe8cSJoe Wallwork Notes: 727*cb7bfe8cSJoe Wallwork This is only used by ParMmg (not Pragmatic or Mmg). 728cc2eee55SJoe Wallwork 729cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetVerbosity(), DMPlexMetricGetNumIterations() 730*cb7bfe8cSJoe Wallwork @*/ 731cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricSetNumIterations(DM dm, PetscInt numIter) 732cc2eee55SJoe Wallwork { 733cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 734cc2eee55SJoe Wallwork PetscErrorCode ierr; 735cc2eee55SJoe Wallwork 736cc2eee55SJoe Wallwork PetscFunctionBegin; 737cc2eee55SJoe Wallwork if (!plex->metricCtx) { 738cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 739cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 740cc2eee55SJoe Wallwork } 741cc2eee55SJoe Wallwork plex->metricCtx->numIter = numIter; 742cc2eee55SJoe Wallwork PetscFunctionReturn(0); 743cc2eee55SJoe Wallwork } 744cc2eee55SJoe Wallwork 745*cb7bfe8cSJoe Wallwork /*@ 746cc2eee55SJoe Wallwork DMPlexMetricGetNumIterations - Get the number of parallel adaptation iterations 747cc2eee55SJoe Wallwork 748cc2eee55SJoe Wallwork Input parameters: 749cc2eee55SJoe Wallwork . dm - The DM 750cc2eee55SJoe Wallwork 751cc2eee55SJoe Wallwork Output parameters: 752cc2eee55SJoe Wallwork . numIter - the number of parallel adaptation iterations 753cc2eee55SJoe Wallwork 754*cb7bfe8cSJoe Wallwork Level: beginner 755*cb7bfe8cSJoe Wallwork 756*cb7bfe8cSJoe Wallwork Notes: 757*cb7bfe8cSJoe Wallwork This is only used by Mmg and ParMmg (not Pragmatic or Mmg). 758cc2eee55SJoe Wallwork 759cc2eee55SJoe Wallwork .seealso: DMPlexMetricSetNumIterations(), DMPlexMetricGetVerbosity() 760*cb7bfe8cSJoe Wallwork @*/ 761cc2eee55SJoe Wallwork PetscErrorCode DMPlexMetricGetNumIterations(DM dm, PetscInt *numIter) 762cc2eee55SJoe Wallwork { 763cc2eee55SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 764cc2eee55SJoe Wallwork PetscErrorCode ierr; 765cc2eee55SJoe Wallwork 766cc2eee55SJoe Wallwork PetscFunctionBegin; 767cc2eee55SJoe Wallwork if (!plex->metricCtx) { 768cc2eee55SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 769cc2eee55SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 770cc2eee55SJoe Wallwork } 771cc2eee55SJoe Wallwork *numIter = plex->metricCtx->numIter; 772cc2eee55SJoe Wallwork PetscFunctionReturn(0); 773cc2eee55SJoe Wallwork } 774cc2eee55SJoe Wallwork 77520282da2SJoe Wallwork PetscErrorCode DMPlexP1FieldCreate_Private(DM dm, PetscInt f, PetscInt size, Vec *metric) 77620282da2SJoe Wallwork { 77720282da2SJoe Wallwork MPI_Comm comm; 77820282da2SJoe Wallwork PetscErrorCode ierr; 77920282da2SJoe Wallwork PetscFE fe; 78020282da2SJoe Wallwork PetscInt dim; 78120282da2SJoe Wallwork 78220282da2SJoe Wallwork PetscFunctionBegin; 78320282da2SJoe Wallwork 78420282da2SJoe Wallwork /* Extract metadata from dm */ 78520282da2SJoe Wallwork ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 78620282da2SJoe Wallwork ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 78720282da2SJoe Wallwork 78820282da2SJoe Wallwork /* Create a P1 field of the requested size */ 78920282da2SJoe Wallwork ierr = PetscFECreateLagrange(comm, dim, size, PETSC_TRUE, 1, PETSC_DETERMINE, &fe);CHKERRQ(ierr); 79020282da2SJoe Wallwork ierr = DMSetField(dm, f, NULL, (PetscObject)fe);CHKERRQ(ierr); 79120282da2SJoe Wallwork ierr = DMCreateDS(dm);CHKERRQ(ierr); 79220282da2SJoe Wallwork ierr = PetscFEDestroy(&fe);CHKERRQ(ierr); 79320282da2SJoe Wallwork ierr = DMCreateLocalVector(dm, metric);CHKERRQ(ierr); 79420282da2SJoe Wallwork 79520282da2SJoe Wallwork PetscFunctionReturn(0); 79620282da2SJoe Wallwork } 79720282da2SJoe Wallwork 798*cb7bfe8cSJoe Wallwork /*@ 79920282da2SJoe Wallwork DMPlexMetricCreate - Create a Riemannian metric field 80020282da2SJoe Wallwork 80120282da2SJoe Wallwork Input parameters: 80220282da2SJoe Wallwork + dm - The DM 80320282da2SJoe Wallwork - f - The field number to use 80420282da2SJoe Wallwork 80520282da2SJoe Wallwork Output parameter: 80620282da2SJoe Wallwork . metric - The metric 80720282da2SJoe Wallwork 80820282da2SJoe Wallwork Level: beginner 80920282da2SJoe Wallwork 81031b70465SJoe Wallwork Notes: 81131b70465SJoe Wallwork 81231b70465SJoe Wallwork It is assumed that the DM is comprised of simplices. 81331b70465SJoe Wallwork 81431b70465SJoe Wallwork Command line options for Riemannian metrics: 81531b70465SJoe Wallwork 816*cb7bfe8cSJoe Wallwork + -dm_plex_metric_isotropic - Is the metric isotropic? 817*cb7bfe8cSJoe Wallwork . -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 818*cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 819*cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 820*cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 821*cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 822*cb7bfe8cSJoe Wallwork . -dm_plex_metric_target_complexity - Target metric complexity 823*cb7bfe8cSJoe Wallwork 824*cb7bfe8cSJoe Wallwork Switching between remeshers can be achieved using 825*cb7bfe8cSJoe Wallwork 826*cb7bfe8cSJoe Wallwork . -dm_adaptor <pragmatic/mmg/parmmg> 827*cb7bfe8cSJoe Wallwork 828*cb7bfe8cSJoe Wallwork Further options that are only relevant to Mmg and ParMmg: 829*cb7bfe8cSJoe Wallwork 830*cb7bfe8cSJoe Wallwork + -dm_plex_metric_gradation_factor - Maximum ratio by which edge lengths may grow during gradation 831*cb7bfe8cSJoe Wallwork . -dm_plex_metric_num_iterations - Number of parallel mesh adaptation iterations for ParMmg 832*cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_insert - Should node insertion/deletion be turned off? 833*cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_swap - Should facet swapping be turned off? 834*cb7bfe8cSJoe Wallwork . -dm_plex_metric_no_move - Should node movement be turned off? 835*cb7bfe8cSJoe Wallwork - -dm_plex_metric_verbosity - Choose a verbosity level from -1 (silent) to 10 (maximum). 83620282da2SJoe Wallwork 83720282da2SJoe Wallwork .seealso: DMPlexMetricCreateUniform(), DMPlexMetricCreateIsotropic() 838*cb7bfe8cSJoe Wallwork @*/ 83920282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreate(DM dm, PetscInt f, Vec *metric) 84020282da2SJoe Wallwork { 84131b70465SJoe Wallwork DM_Plex *plex = (DM_Plex *) dm->data; 84220282da2SJoe Wallwork PetscErrorCode ierr; 84320282da2SJoe Wallwork PetscInt coordDim, Nd; 84420282da2SJoe Wallwork 84520282da2SJoe Wallwork PetscFunctionBegin; 84631b70465SJoe Wallwork if (!plex->metricCtx) { 84731b70465SJoe Wallwork ierr = PetscNew(&plex->metricCtx);CHKERRQ(ierr); 84831b70465SJoe Wallwork ierr = DMPlexMetricSetFromOptions(dm);CHKERRQ(ierr); 84931b70465SJoe Wallwork } 85020282da2SJoe Wallwork ierr = DMGetCoordinateDim(dm, &coordDim);CHKERRQ(ierr); 85120282da2SJoe Wallwork Nd = coordDim*coordDim; 85220282da2SJoe Wallwork ierr = DMPlexP1FieldCreate_Private(dm, f, Nd, metric);CHKERRQ(ierr); 85320282da2SJoe Wallwork PetscFunctionReturn(0); 85420282da2SJoe Wallwork } 85520282da2SJoe Wallwork 85620282da2SJoe Wallwork typedef struct { 85720282da2SJoe Wallwork PetscReal scaling; /* Scaling for uniform metric diagonal */ 85820282da2SJoe Wallwork } DMPlexMetricUniformCtx; 85920282da2SJoe Wallwork 86020282da2SJoe Wallwork static PetscErrorCode diagonal(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx) 86120282da2SJoe Wallwork { 86220282da2SJoe Wallwork DMPlexMetricUniformCtx *user = (DMPlexMetricUniformCtx*)ctx; 86320282da2SJoe Wallwork PetscInt i, j; 86420282da2SJoe Wallwork 86520282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 86620282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 86720282da2SJoe Wallwork if (i == j) u[i+dim*j] = user->scaling; 86820282da2SJoe Wallwork else u[i+dim*j] = 0.0; 86920282da2SJoe Wallwork } 87020282da2SJoe Wallwork } 87120282da2SJoe Wallwork return 0; 87220282da2SJoe Wallwork } 87320282da2SJoe Wallwork 874*cb7bfe8cSJoe Wallwork /*@ 87520282da2SJoe Wallwork DMPlexMetricCreateUniform - Construct a uniform isotropic metric 87620282da2SJoe Wallwork 87720282da2SJoe Wallwork Input parameters: 87820282da2SJoe Wallwork + dm - The DM 87920282da2SJoe Wallwork . f - The field number to use 88020282da2SJoe Wallwork - alpha - Scaling parameter for the diagonal 88120282da2SJoe Wallwork 88220282da2SJoe Wallwork Output parameter: 88320282da2SJoe Wallwork . metric - The uniform metric 88420282da2SJoe Wallwork 88520282da2SJoe Wallwork Level: beginner 88620282da2SJoe Wallwork 88720282da2SJoe Wallwork Note: It is assumed that the DM is comprised of simplices. 88820282da2SJoe Wallwork 88920282da2SJoe Wallwork .seealso: DMPlexMetricCreate(), DMPlexMetricCreateIsotropic() 890*cb7bfe8cSJoe Wallwork @*/ 89120282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreateUniform(DM dm, PetscInt f, PetscReal alpha, Vec *metric) 89220282da2SJoe Wallwork { 89320282da2SJoe Wallwork DMPlexMetricUniformCtx user; 89420282da2SJoe Wallwork PetscErrorCode (*funcs[1])(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *); 89520282da2SJoe Wallwork PetscErrorCode ierr; 89620282da2SJoe Wallwork void *ctxs[1]; 89720282da2SJoe Wallwork 89820282da2SJoe Wallwork PetscFunctionBegin; 89920282da2SJoe Wallwork ierr = DMPlexMetricCreate(dm, f, metric);CHKERRQ(ierr); 90020282da2SJoe Wallwork if (!alpha) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform metric scaling is undefined"); 90120282da2SJoe Wallwork if (alpha < 1.0e-30) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Uniform metric scaling %e should be positive", alpha); 90220282da2SJoe Wallwork else user.scaling = alpha; 90320282da2SJoe Wallwork funcs[0] = diagonal; 90420282da2SJoe Wallwork ctxs[0] = &user; 90520282da2SJoe Wallwork ierr = DMProjectFunctionLocal(dm, 0.0, funcs, ctxs, INSERT_ALL_VALUES, *metric);CHKERRQ(ierr); 90620282da2SJoe Wallwork PetscFunctionReturn(0); 90720282da2SJoe Wallwork } 90820282da2SJoe Wallwork 909*cb7bfe8cSJoe Wallwork /*@ 91020282da2SJoe Wallwork DMPlexMetricCreateIsotropic - Construct an isotropic metric from an error indicator 91120282da2SJoe Wallwork 91220282da2SJoe Wallwork Input parameters: 91320282da2SJoe Wallwork + dm - The DM 91420282da2SJoe Wallwork . f - The field number to use 91520282da2SJoe Wallwork - indicator - The error indicator 91620282da2SJoe Wallwork 91720282da2SJoe Wallwork Output parameter: 91820282da2SJoe Wallwork . metric - The isotropic metric 91920282da2SJoe Wallwork 92020282da2SJoe Wallwork Level: beginner 92120282da2SJoe Wallwork 92220282da2SJoe Wallwork Notes: 92320282da2SJoe Wallwork 92420282da2SJoe Wallwork It is assumed that the DM is comprised of simplices. 92520282da2SJoe Wallwork 92620282da2SJoe Wallwork The indicator needs to be a scalar field defined at *vertices*. 92720282da2SJoe Wallwork 92820282da2SJoe Wallwork .seealso: DMPlexMetricCreate(), DMPlexMetricCreateUniform() 929*cb7bfe8cSJoe Wallwork @*/ 93020282da2SJoe Wallwork PetscErrorCode DMPlexMetricCreateIsotropic(DM dm, PetscInt f, Vec indicator, Vec *metric) 93120282da2SJoe Wallwork { 93220282da2SJoe Wallwork DM dmIndi; 93320282da2SJoe Wallwork PetscErrorCode ierr; 93420282da2SJoe Wallwork PetscInt dim, d, vStart, vEnd, v; 93520282da2SJoe Wallwork const PetscScalar *indi; 93620282da2SJoe Wallwork PetscScalar *met; 93720282da2SJoe Wallwork 93820282da2SJoe Wallwork PetscFunctionBegin; 93920282da2SJoe Wallwork ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 94020282da2SJoe Wallwork ierr = DMPlexMetricCreate(dm, f, metric);CHKERRQ(ierr); 94120282da2SJoe Wallwork ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 94220282da2SJoe Wallwork ierr = VecGetArrayRead(indicator, &indi);CHKERRQ(ierr); 94320282da2SJoe Wallwork ierr = VecGetArrayWrite(*metric, &met);CHKERRQ(ierr); 94420282da2SJoe Wallwork ierr = VecGetDM(indicator, &dmIndi);CHKERRQ(ierr); 94520282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 94620282da2SJoe Wallwork PetscScalar *vindi, *vmet; 94720282da2SJoe Wallwork ierr = DMPlexPointLocalRead(dmIndi, v, indi, &vindi);CHKERRQ(ierr); 94820282da2SJoe Wallwork ierr = DMPlexPointLocalRef(dm, v, met, &vmet);CHKERRQ(ierr); 94920282da2SJoe Wallwork for (d = 0; d < dim; ++d) vmet[d*(dim+1)] = vindi[0]; 95020282da2SJoe Wallwork } 95120282da2SJoe Wallwork ierr = VecRestoreArrayWrite(*metric, &met);CHKERRQ(ierr); 95220282da2SJoe Wallwork ierr = VecRestoreArrayRead(indicator, &indi);CHKERRQ(ierr); 95320282da2SJoe Wallwork PetscFunctionReturn(0); 95420282da2SJoe Wallwork } 95520282da2SJoe Wallwork 95682490253SJoe Wallwork static PetscErrorCode LAPACKsyevFail(PetscInt dim, PetscScalar Mpos[]) 95782490253SJoe Wallwork { 95882490253SJoe Wallwork PetscInt i, j; 95982490253SJoe Wallwork 96082490253SJoe Wallwork PetscFunctionBegin; 96182490253SJoe Wallwork PetscPrintf(PETSC_COMM_SELF, "Failed to apply LAPACKsyev to the matrix\n"); 96282490253SJoe Wallwork for (i = 0; i < dim; ++i) { 96382490253SJoe Wallwork if (i == 0) PetscPrintf(PETSC_COMM_SELF, " [["); 96482490253SJoe Wallwork else PetscPrintf(PETSC_COMM_SELF, " ["); 96582490253SJoe Wallwork for (j = 0; j < dim; ++j) { 96682490253SJoe Wallwork if (j < dim-1) PetscPrintf(PETSC_COMM_SELF, "%15.8e, ", Mpos[i*dim+j]); 96782490253SJoe Wallwork else PetscPrintf(PETSC_COMM_SELF, "%15.8e", Mpos[i*dim+j]); 96882490253SJoe Wallwork } 96982490253SJoe Wallwork if (i < dim-1) PetscPrintf(PETSC_COMM_SELF, "]\n"); 97082490253SJoe Wallwork else PetscPrintf(PETSC_COMM_SELF, "]]\n"); 97182490253SJoe Wallwork } 97282490253SJoe Wallwork PetscFunctionReturn(0); 97382490253SJoe Wallwork } 97482490253SJoe Wallwork 9753f07679eSJoe Wallwork static PetscErrorCode DMPlexMetricModify_Private(PetscInt dim, PetscReal h_min, PetscReal h_max, PetscReal a_max, PetscScalar Mp[], PetscScalar *detMp) 97620282da2SJoe Wallwork { 97720282da2SJoe Wallwork PetscErrorCode ierr; 97820282da2SJoe Wallwork PetscInt i, j, k; 97920282da2SJoe Wallwork PetscReal *eigs, max_eig, l_min = 1.0/(h_max*h_max), l_max = 1.0/(h_min*h_min), la_min = 1.0/(a_max*a_max); 98020282da2SJoe Wallwork PetscScalar *Mpos; 98120282da2SJoe Wallwork 98220282da2SJoe Wallwork PetscFunctionBegin; 98320282da2SJoe Wallwork ierr = PetscMalloc2(dim*dim, &Mpos, dim, &eigs);CHKERRQ(ierr); 98420282da2SJoe Wallwork 98520282da2SJoe Wallwork /* Symmetrize */ 98620282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 98720282da2SJoe Wallwork Mpos[i*dim+i] = Mp[i*dim+i]; 98820282da2SJoe Wallwork for (j = i+1; j < dim; ++j) { 98920282da2SJoe Wallwork Mpos[i*dim+j] = 0.5*(Mp[i*dim+j] + Mp[j*dim+i]); 99020282da2SJoe Wallwork Mpos[j*dim+i] = Mpos[i*dim+j]; 99120282da2SJoe Wallwork } 99220282da2SJoe Wallwork } 99320282da2SJoe Wallwork 99420282da2SJoe Wallwork /* Compute eigendecomposition */ 99520282da2SJoe Wallwork { 99620282da2SJoe Wallwork PetscScalar *work; 99720282da2SJoe Wallwork PetscBLASInt lwork; 99820282da2SJoe Wallwork 99920282da2SJoe Wallwork lwork = 5*dim; 100020282da2SJoe Wallwork ierr = PetscMalloc1(5*dim, &work);CHKERRQ(ierr); 100120282da2SJoe Wallwork { 100220282da2SJoe Wallwork PetscBLASInt lierr; 100320282da2SJoe Wallwork PetscBLASInt nb; 100420282da2SJoe Wallwork 100520282da2SJoe Wallwork ierr = PetscBLASIntCast(dim, &nb);CHKERRQ(ierr); 100620282da2SJoe Wallwork ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 100720282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 100820282da2SJoe Wallwork { 100920282da2SJoe Wallwork PetscReal *rwork; 101020282da2SJoe Wallwork ierr = PetscMalloc1(3*dim, &rwork);CHKERRQ(ierr); 101120282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&nb,Mpos,&nb,eigs,work,&lwork,rwork,&lierr)); 101220282da2SJoe Wallwork ierr = PetscFree(rwork);CHKERRQ(ierr); 101320282da2SJoe Wallwork } 101420282da2SJoe Wallwork #else 101520282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev",LAPACKsyev_("V","U",&nb,Mpos,&nb,eigs,work,&lwork,&lierr)); 101620282da2SJoe Wallwork #endif 101782490253SJoe Wallwork if (lierr) { 101882490253SJoe Wallwork for (i = 0; i < dim; ++i) { 101982490253SJoe Wallwork Mpos[i*dim+i] = Mp[i*dim+i]; 102082490253SJoe Wallwork for (j = i+1; j < dim; ++j) { 102182490253SJoe Wallwork Mpos[i*dim+j] = 0.5*(Mp[i*dim+j] + Mp[j*dim+i]); 102282490253SJoe Wallwork Mpos[j*dim+i] = Mpos[i*dim+j]; 102382490253SJoe Wallwork } 102482490253SJoe Wallwork } 102582490253SJoe Wallwork LAPACKsyevFail(dim, Mpos); 102682490253SJoe Wallwork SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 102782490253SJoe Wallwork } 102820282da2SJoe Wallwork ierr = PetscFPTrapPop();CHKERRQ(ierr); 102920282da2SJoe Wallwork } 103020282da2SJoe Wallwork ierr = PetscFree(work);CHKERRQ(ierr); 103120282da2SJoe Wallwork } 103220282da2SJoe Wallwork 103320282da2SJoe Wallwork /* Reflect to positive orthant and enforce maximum and minimum size */ 103420282da2SJoe Wallwork max_eig = 0.0; 103520282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 103620282da2SJoe Wallwork eigs[i] = PetscMin(l_max, PetscMax(l_min, PetscAbsReal(eigs[i]))); 103720282da2SJoe Wallwork max_eig = PetscMax(eigs[i], max_eig); 103820282da2SJoe Wallwork } 103920282da2SJoe Wallwork 10403f07679eSJoe Wallwork /* Enforce maximum anisotropy and compute determinant */ 10413f07679eSJoe Wallwork *detMp = 1.0; 104220282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 104320282da2SJoe Wallwork if (a_max > 1.0) eigs[i] = PetscMax(eigs[i], max_eig*la_min); 10443f07679eSJoe Wallwork *detMp *= eigs[i]; 104520282da2SJoe Wallwork } 104620282da2SJoe Wallwork 104720282da2SJoe Wallwork /* Reconstruct Hessian */ 104820282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 104920282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 105020282da2SJoe Wallwork Mp[i*dim+j] = 0.0; 105120282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 105220282da2SJoe Wallwork Mp[i*dim+j] += Mpos[k*dim+i] * eigs[k] * Mpos[k*dim+j]; 105320282da2SJoe Wallwork } 105420282da2SJoe Wallwork } 105520282da2SJoe Wallwork } 105620282da2SJoe Wallwork ierr = PetscFree2(Mpos, eigs);CHKERRQ(ierr); 105720282da2SJoe Wallwork 105820282da2SJoe Wallwork PetscFunctionReturn(0); 105920282da2SJoe Wallwork } 106020282da2SJoe Wallwork 1061*cb7bfe8cSJoe Wallwork /*@ 106220282da2SJoe Wallwork DMPlexMetricEnforceSPD - Enforce symmetric positive-definiteness of a metric 106320282da2SJoe Wallwork 106420282da2SJoe Wallwork Input parameters: 106520282da2SJoe Wallwork + dm - The DM 10663f07679eSJoe Wallwork . metricIn - The metric 106799abec2bSJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 10683f07679eSJoe Wallwork - restrictAnisotropy - Should maximum anisotropy be enforced? 106920282da2SJoe Wallwork 107020282da2SJoe Wallwork Output parameter: 10713f07679eSJoe Wallwork + metricOut - The metric 10723f07679eSJoe Wallwork - determinant - Its determinant 107320282da2SJoe Wallwork 107420282da2SJoe Wallwork Level: beginner 107520282da2SJoe Wallwork 1076*cb7bfe8cSJoe Wallwork Notes: 1077*cb7bfe8cSJoe Wallwork 1078*cb7bfe8cSJoe Wallwork Relevant command line options: 1079*cb7bfe8cSJoe Wallwork 1080*cb7bfe8cSJoe Wallwork + -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1081*cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1082*cb7bfe8cSJoe Wallwork - -dm_plex_metric_a_max - Maximum tolerated anisotropy 1083*cb7bfe8cSJoe Wallwork 108420282da2SJoe Wallwork .seealso: DMPlexMetricNormalize(), DMPlexMetricIntersection() 1085*cb7bfe8cSJoe Wallwork @*/ 10863f07679eSJoe Wallwork PetscErrorCode DMPlexMetricEnforceSPD(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec *metricOut, Vec *determinant) 108720282da2SJoe Wallwork { 10883f07679eSJoe Wallwork DM dmDet; 108920282da2SJoe Wallwork PetscErrorCode ierr; 109020282da2SJoe Wallwork PetscInt dim, vStart, vEnd, v; 10913f07679eSJoe Wallwork PetscScalar *met, *det; 109220282da2SJoe Wallwork PetscReal h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0; 109320282da2SJoe Wallwork 109420282da2SJoe Wallwork PetscFunctionBegin; 109520282da2SJoe Wallwork 109620282da2SJoe Wallwork /* Extract metadata from dm */ 109720282da2SJoe Wallwork ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 109820282da2SJoe Wallwork if (restrictSizes) { 109999abec2bSJoe Wallwork ierr = DMPlexMetricGetMinimumMagnitude(dm, &h_min);CHKERRQ(ierr); 110099abec2bSJoe Wallwork ierr = DMPlexMetricGetMaximumMagnitude(dm, &h_max);CHKERRQ(ierr); 110199abec2bSJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 110299abec2bSJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 110399abec2bSJoe Wallwork if (h_min >= h_max) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Incompatible min/max metric magnitudes (%.4e not smaller than %.4e)", h_min, h_max); 110499abec2bSJoe Wallwork } 110599abec2bSJoe Wallwork if (restrictAnisotropy) { 110699abec2bSJoe Wallwork ierr = DMPlexMetricGetMaximumAnisotropy(dm, &a_max);CHKERRQ(ierr); 110799abec2bSJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 110820282da2SJoe Wallwork } 110920282da2SJoe Wallwork 11103f07679eSJoe Wallwork /* Setup output metric and determinant */ 11113f07679eSJoe Wallwork ierr = DMPlexMetricCreate(dm, 0, metricOut);CHKERRQ(ierr); 11123f07679eSJoe Wallwork ierr = VecCopy(metricIn, *metricOut);CHKERRQ(ierr); 11133f07679eSJoe Wallwork ierr = DMClone(dm, &dmDet);CHKERRQ(ierr); 11143f07679eSJoe Wallwork ierr = DMPlexP1FieldCreate_Private(dmDet, 0, 1, determinant);CHKERRQ(ierr); 11153f07679eSJoe Wallwork 111620282da2SJoe Wallwork /* Enforce SPD */ 111720282da2SJoe Wallwork ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 11183f07679eSJoe Wallwork ierr = VecGetArray(*metricOut, &met);CHKERRQ(ierr); 11193f07679eSJoe Wallwork ierr = VecGetArray(*determinant, &det);CHKERRQ(ierr); 112020282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 11213f07679eSJoe Wallwork PetscScalar *vmet, *vdet; 112220282da2SJoe Wallwork ierr = DMPlexPointLocalRef(dm, v, met, &vmet);CHKERRQ(ierr); 11233f07679eSJoe Wallwork ierr = DMPlexPointLocalRef(dmDet, v, det, &vdet);CHKERRQ(ierr); 11243f07679eSJoe Wallwork ierr = DMPlexMetricModify_Private(dim, h_min, h_max, a_max, vmet, vdet);CHKERRQ(ierr); 112520282da2SJoe Wallwork } 11263f07679eSJoe Wallwork ierr = VecRestoreArray(*determinant, &det);CHKERRQ(ierr); 11273f07679eSJoe Wallwork ierr = VecRestoreArray(*metricOut, &met);CHKERRQ(ierr); 112820282da2SJoe Wallwork 112920282da2SJoe Wallwork PetscFunctionReturn(0); 113020282da2SJoe Wallwork } 113120282da2SJoe Wallwork 113220282da2SJoe Wallwork static void detMFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 113320282da2SJoe Wallwork const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 113420282da2SJoe Wallwork const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 113520282da2SJoe Wallwork PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 113620282da2SJoe Wallwork { 113720282da2SJoe Wallwork const PetscScalar p = constants[0]; 113820282da2SJoe Wallwork 11393f07679eSJoe Wallwork f0[0] = PetscPowReal(u[0], p/(2.0*p + dim)); 114020282da2SJoe Wallwork } 114120282da2SJoe Wallwork 1142*cb7bfe8cSJoe Wallwork /*@ 114320282da2SJoe Wallwork DMPlexMetricNormalize - Apply L-p normalization to a metric 114420282da2SJoe Wallwork 114520282da2SJoe Wallwork Input parameters: 114620282da2SJoe Wallwork + dm - The DM 114720282da2SJoe Wallwork . metricIn - The unnormalized metric 114816522936SJoe Wallwork . restrictSizes - Should maximum/minimum metric magnitudes be enforced? 114916522936SJoe Wallwork - restrictAnisotropy - Should maximum metric anisotropy be enforced? 115020282da2SJoe Wallwork 115120282da2SJoe Wallwork Output parameter: 115220282da2SJoe Wallwork . metricOut - The normalized metric 115320282da2SJoe Wallwork 115420282da2SJoe Wallwork Level: beginner 115520282da2SJoe Wallwork 1156*cb7bfe8cSJoe Wallwork Notes: 1157*cb7bfe8cSJoe Wallwork 1158*cb7bfe8cSJoe Wallwork Relevant command line options: 1159*cb7bfe8cSJoe Wallwork 1160*cb7bfe8cSJoe Wallwork + -dm_plex_metric_restrict_anisotropy_first - Should anisotropy be restricted before normalization? 1161*cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_min - Minimum tolerated metric magnitude 1162*cb7bfe8cSJoe Wallwork . -dm_plex_metric_h_max - Maximum tolerated metric magnitude 1163*cb7bfe8cSJoe Wallwork . -dm_plex_metric_a_max - Maximum tolerated anisotropy 1164*cb7bfe8cSJoe Wallwork . -dm_plex_metric_p - L-p normalization order 1165*cb7bfe8cSJoe Wallwork - -dm_plex_metric_target_complexity - Target metric complexity 1166*cb7bfe8cSJoe Wallwork 116720282da2SJoe Wallwork .seealso: DMPlexMetricEnforceSPD(), DMPlexMetricIntersection() 1168*cb7bfe8cSJoe Wallwork @*/ 116916522936SJoe Wallwork PetscErrorCode DMPlexMetricNormalize(DM dm, Vec metricIn, PetscBool restrictSizes, PetscBool restrictAnisotropy, Vec *metricOut) 117020282da2SJoe Wallwork { 11713f07679eSJoe Wallwork DM dmDet; 117220282da2SJoe Wallwork MPI_Comm comm; 117316522936SJoe Wallwork PetscBool restrictAnisotropyFirst; 117420282da2SJoe Wallwork PetscDS ds; 117520282da2SJoe Wallwork PetscErrorCode ierr; 117620282da2SJoe Wallwork PetscInt dim, Nd, vStart, vEnd, v, i; 11773f07679eSJoe Wallwork PetscScalar *met, *det, integral, constants[1]; 11783f07679eSJoe Wallwork PetscReal p, h_min = 1.0e-30, h_max = 1.0e+30, a_max = 0.0, factGlob, target, realIntegral; 11793f07679eSJoe Wallwork Vec determinant; 118020282da2SJoe Wallwork 118120282da2SJoe Wallwork PetscFunctionBegin; 118220282da2SJoe Wallwork 118320282da2SJoe Wallwork /* Extract metadata from dm */ 118420282da2SJoe Wallwork ierr = PetscObjectGetComm((PetscObject) dm, &comm);CHKERRQ(ierr); 118520282da2SJoe Wallwork ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 118620282da2SJoe Wallwork Nd = dim*dim; 118720282da2SJoe Wallwork 118820282da2SJoe Wallwork /* Set up metric and ensure it is SPD */ 118916522936SJoe Wallwork ierr = DMPlexMetricRestrictAnisotropyFirst(dm, &restrictAnisotropyFirst);CHKERRQ(ierr); 11903f07679eSJoe Wallwork ierr = DMPlexMetricEnforceSPD(dm, metricIn, PETSC_FALSE, (PetscBool)(restrictAnisotropy && restrictAnisotropyFirst), metricOut, &determinant);CHKERRQ(ierr); 119120282da2SJoe Wallwork 119220282da2SJoe Wallwork /* Compute global normalization factor */ 119316522936SJoe Wallwork ierr = DMPlexMetricGetTargetComplexity(dm, &target);CHKERRQ(ierr); 119416522936SJoe Wallwork ierr = DMPlexMetricGetNormalizationOrder(dm, &p);CHKERRQ(ierr); 119516522936SJoe Wallwork constants[0] = p; 11963f07679eSJoe Wallwork ierr = VecGetDM(determinant, &dmDet);CHKERRQ(ierr); 11973f07679eSJoe Wallwork ierr = DMGetDS(dmDet, &ds);CHKERRQ(ierr); 119820282da2SJoe Wallwork ierr = PetscDSSetConstants(ds, 1, constants);CHKERRQ(ierr); 119920282da2SJoe Wallwork ierr = PetscDSSetObjective(ds, 0, detMFunc);CHKERRQ(ierr); 12003f07679eSJoe Wallwork ierr = DMPlexComputeIntegralFEM(dmDet, determinant, &integral, NULL);CHKERRQ(ierr); 12013f07679eSJoe Wallwork realIntegral = PetscRealPart(integral); 12023f07679eSJoe Wallwork if (realIntegral < 1.0e-30) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Global metric normalization factor should be strictly positive, not %.4e Is the input metric positive-definite?", realIntegral); 12033f07679eSJoe Wallwork factGlob = PetscPowReal(target/realIntegral, 2.0/dim); 120420282da2SJoe Wallwork 120520282da2SJoe Wallwork /* Apply local scaling */ 120620282da2SJoe Wallwork if (restrictSizes) { 120716522936SJoe Wallwork ierr = DMPlexMetricGetMinimumMagnitude(dm, &h_min);CHKERRQ(ierr); 120816522936SJoe Wallwork ierr = DMPlexMetricGetMaximumMagnitude(dm, &h_max);CHKERRQ(ierr); 120916522936SJoe Wallwork h_min = PetscMax(h_min, 1.0e-30); 121016522936SJoe Wallwork h_max = PetscMin(h_max, 1.0e+30); 121116522936SJoe Wallwork if (h_min >= h_max) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Incompatible min/max metric magnitudes (%.4e not smaller than %.4e)", h_min, h_max); 121216522936SJoe Wallwork } 121316522936SJoe Wallwork if (restrictAnisotropy && !restrictAnisotropyFirst) { 121416522936SJoe Wallwork ierr = DMPlexMetricGetMaximumAnisotropy(dm, &a_max);CHKERRQ(ierr); 121516522936SJoe Wallwork a_max = PetscMin(a_max, 1.0e+30); 121620282da2SJoe Wallwork } 121720282da2SJoe Wallwork ierr = VecGetArray(*metricOut, &met);CHKERRQ(ierr); 12183f07679eSJoe Wallwork ierr = VecGetArray(determinant, &det);CHKERRQ(ierr); 121916522936SJoe Wallwork ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 122020282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 12213f07679eSJoe Wallwork PetscScalar *Mp, *detM; 12223f07679eSJoe Wallwork PetscReal fact; 122320282da2SJoe Wallwork 122420282da2SJoe Wallwork ierr = DMPlexPointLocalRef(dm, v, met, &Mp);CHKERRQ(ierr); 12253f07679eSJoe Wallwork ierr = DMPlexPointLocalRef(dmDet, v, det, &detM);CHKERRQ(ierr); 12263f07679eSJoe Wallwork fact = factGlob * PetscPowReal(PetscAbsScalar(detM[0]), -1.0/(2*p+dim)); 122720282da2SJoe Wallwork for (i = 0; i < Nd; ++i) Mp[i] *= fact; 12283f07679eSJoe Wallwork if (restrictSizes) { ierr = DMPlexMetricModify_Private(dim, h_min, h_max, a_max, Mp, detM);CHKERRQ(ierr); } 122920282da2SJoe Wallwork } 12303f07679eSJoe Wallwork ierr = VecRestoreArray(determinant, &det);CHKERRQ(ierr); 123120282da2SJoe Wallwork ierr = VecRestoreArray(*metricOut, &met);CHKERRQ(ierr); 12323f07679eSJoe Wallwork ierr = VecDestroy(&determinant);CHKERRQ(ierr); 12333f07679eSJoe Wallwork ierr = DMDestroy(&dmDet);CHKERRQ(ierr); 123420282da2SJoe Wallwork 123520282da2SJoe Wallwork PetscFunctionReturn(0); 123620282da2SJoe Wallwork } 123720282da2SJoe Wallwork 1238*cb7bfe8cSJoe Wallwork /*@ 123920282da2SJoe Wallwork DMPlexMetricAverage - Compute the average of a list of metrics 124020282da2SJoe Wallwork 124120282da2SJoe Wallwork Input Parameter: 124220282da2SJoe Wallwork + dm - The DM 124320282da2SJoe Wallwork . numMetrics - The number of metrics to be averaged 124420282da2SJoe Wallwork . weights - Weights for the average 124520282da2SJoe Wallwork - metrics - The metrics to be averaged 124620282da2SJoe Wallwork 124720282da2SJoe Wallwork Output Parameter: 124820282da2SJoe Wallwork . metricAvg - The averaged metric 124920282da2SJoe Wallwork 125020282da2SJoe Wallwork Level: beginner 125120282da2SJoe Wallwork 125220282da2SJoe Wallwork Notes: 125320282da2SJoe Wallwork The weights should sum to unity. 125420282da2SJoe Wallwork 125520282da2SJoe Wallwork If weights are not provided then an unweighted average is used. 125620282da2SJoe Wallwork 125720282da2SJoe Wallwork .seealso: DMPlexMetricAverage2(), DMPlexMetricAverage3(), DMPlexMetricIntersection() 1258*cb7bfe8cSJoe Wallwork @*/ 125920282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage(DM dm, PetscInt numMetrics, PetscReal weights[], Vec metrics[], Vec *metricAvg) 126020282da2SJoe Wallwork { 126120282da2SJoe Wallwork PetscBool haveWeights = PETSC_TRUE; 126220282da2SJoe Wallwork PetscErrorCode ierr; 126320282da2SJoe Wallwork PetscInt i; 126420282da2SJoe Wallwork PetscReal sum = 0.0, tol = 1.0e-10; 126520282da2SJoe Wallwork 126620282da2SJoe Wallwork PetscFunctionBegin; 126720282da2SJoe Wallwork if (numMetrics < 1) { SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot average %d < 1 metrics", numMetrics); } 126820282da2SJoe Wallwork ierr = DMPlexMetricCreate(dm, 0, metricAvg);CHKERRQ(ierr); 126920282da2SJoe Wallwork ierr = VecSet(*metricAvg, 0.0);CHKERRQ(ierr); 127020282da2SJoe Wallwork 127120282da2SJoe Wallwork /* Default to the unweighted case */ 127220282da2SJoe Wallwork if (!weights) { 127320282da2SJoe Wallwork ierr = PetscMalloc1(numMetrics, &weights);CHKERRQ(ierr); 127420282da2SJoe Wallwork haveWeights = PETSC_FALSE; 127520282da2SJoe Wallwork for (i = 0; i < numMetrics; ++i) {weights[i] = 1.0/numMetrics; } 127620282da2SJoe Wallwork } 127720282da2SJoe Wallwork 127820282da2SJoe Wallwork /* Check weights sum to unity */ 127920282da2SJoe Wallwork for (i = 0; i < numMetrics; ++i) { sum += weights[i]; } 128020282da2SJoe Wallwork if (PetscAbsReal(sum - 1) > tol) { SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Weights do not sum to unity"); } 128120282da2SJoe Wallwork 128220282da2SJoe Wallwork /* Compute metric average */ 128320282da2SJoe Wallwork for (i = 0; i < numMetrics; ++i) { ierr = VecAXPY(*metricAvg, weights[i], metrics[i]);CHKERRQ(ierr); } 128420282da2SJoe Wallwork if (!haveWeights) {ierr = PetscFree(weights); } 128520282da2SJoe Wallwork PetscFunctionReturn(0); 128620282da2SJoe Wallwork } 128720282da2SJoe Wallwork 1288*cb7bfe8cSJoe Wallwork /*@ 128920282da2SJoe Wallwork DMPlexMetricAverage2 - Compute the unweighted average of two metrics 129020282da2SJoe Wallwork 129120282da2SJoe Wallwork Input Parameter: 129220282da2SJoe Wallwork + dm - The DM 129320282da2SJoe Wallwork . metric1 - The first metric to be averaged 129420282da2SJoe Wallwork - metric2 - The second metric to be averaged 129520282da2SJoe Wallwork 129620282da2SJoe Wallwork Output Parameter: 129720282da2SJoe Wallwork . metricAvg - The averaged metric 129820282da2SJoe Wallwork 129920282da2SJoe Wallwork Level: beginner 130020282da2SJoe Wallwork 130120282da2SJoe Wallwork .seealso: DMPlexMetricAverage(), DMPlexMetricAverage3() 1302*cb7bfe8cSJoe Wallwork @*/ 130320282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage2(DM dm, Vec metric1, Vec metric2, Vec *metricAvg) 130420282da2SJoe Wallwork { 130520282da2SJoe Wallwork PetscErrorCode ierr; 130620282da2SJoe Wallwork PetscReal weights[2] = {0.5, 0.5}; 130720282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 130820282da2SJoe Wallwork 130920282da2SJoe Wallwork PetscFunctionBegin; 131020282da2SJoe Wallwork ierr = DMPlexMetricAverage(dm, 2, weights, metrics, metricAvg);CHKERRQ(ierr); 131120282da2SJoe Wallwork PetscFunctionReturn(0); 131220282da2SJoe Wallwork } 131320282da2SJoe Wallwork 1314*cb7bfe8cSJoe Wallwork /*@ 131520282da2SJoe Wallwork DMPlexMetricAverage3 - Compute the unweighted average of three metrics 131620282da2SJoe Wallwork 131720282da2SJoe Wallwork Input Parameter: 131820282da2SJoe Wallwork + dm - The DM 131920282da2SJoe Wallwork . metric1 - The first metric to be averaged 132020282da2SJoe Wallwork . metric2 - The second metric to be averaged 132120282da2SJoe Wallwork - metric3 - The third metric to be averaged 132220282da2SJoe Wallwork 132320282da2SJoe Wallwork Output Parameter: 132420282da2SJoe Wallwork . metricAvg - The averaged metric 132520282da2SJoe Wallwork 132620282da2SJoe Wallwork Level: beginner 132720282da2SJoe Wallwork 132820282da2SJoe Wallwork .seealso: DMPlexMetricAverage(), DMPlexMetricAverage2() 1329*cb7bfe8cSJoe Wallwork @*/ 133020282da2SJoe Wallwork PetscErrorCode DMPlexMetricAverage3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec *metricAvg) 133120282da2SJoe Wallwork { 133220282da2SJoe Wallwork PetscErrorCode ierr; 133320282da2SJoe Wallwork PetscReal weights[3] = {1.0/3.0, 1.0/3.0, 1.0/3.0}; 133420282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 133520282da2SJoe Wallwork 133620282da2SJoe Wallwork PetscFunctionBegin; 133720282da2SJoe Wallwork ierr = DMPlexMetricAverage(dm, 3, weights, metrics, metricAvg);CHKERRQ(ierr); 133820282da2SJoe Wallwork PetscFunctionReturn(0); 133920282da2SJoe Wallwork } 134020282da2SJoe Wallwork 134120282da2SJoe Wallwork static PetscErrorCode DMPlexMetricIntersection_Private(PetscInt dim, PetscScalar M1[], PetscScalar M2[]) 134220282da2SJoe Wallwork { 134320282da2SJoe Wallwork PetscErrorCode ierr; 134420282da2SJoe Wallwork PetscInt i, j, k, l, m; 134520282da2SJoe Wallwork PetscReal *evals, *evals1; 134620282da2SJoe Wallwork PetscScalar *evecs, *sqrtM1, *isqrtM1; 134720282da2SJoe Wallwork 134820282da2SJoe Wallwork PetscFunctionBegin; 134920282da2SJoe Wallwork ierr = PetscMalloc5(dim*dim, &evecs, dim*dim, &sqrtM1, dim*dim, &isqrtM1, dim, &evals, dim, &evals1);CHKERRQ(ierr); 135020282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 135120282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 135220282da2SJoe Wallwork evecs[i*dim+j] = M1[i*dim+j]; 135320282da2SJoe Wallwork } 135420282da2SJoe Wallwork } 135520282da2SJoe Wallwork { 135620282da2SJoe Wallwork PetscScalar *work; 135720282da2SJoe Wallwork PetscBLASInt lwork; 135820282da2SJoe Wallwork 135920282da2SJoe Wallwork lwork = 5*dim; 136020282da2SJoe Wallwork ierr = PetscMalloc1(5*dim, &work);CHKERRQ(ierr); 136120282da2SJoe Wallwork { 136220282da2SJoe Wallwork PetscBLASInt lierr, nb; 136320282da2SJoe Wallwork PetscReal sqrtk; 136420282da2SJoe Wallwork 136520282da2SJoe Wallwork /* Compute eigendecomposition of M1 */ 136620282da2SJoe Wallwork ierr = PetscBLASIntCast(dim, &nb);CHKERRQ(ierr); 136720282da2SJoe Wallwork ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 136820282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 136920282da2SJoe Wallwork { 137020282da2SJoe Wallwork PetscReal *rwork; 137120282da2SJoe Wallwork ierr = PetscMalloc1(3*dim, &rwork);CHKERRQ(ierr); 137220282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals1, work, &lwork, rwork, &lierr)); 137320282da2SJoe Wallwork ierr = PetscFree(rwork);CHKERRQ(ierr); 137420282da2SJoe Wallwork } 137520282da2SJoe Wallwork #else 137620282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals1, work, &lwork, &lierr)); 137720282da2SJoe Wallwork #endif 137882490253SJoe Wallwork if (lierr) { 137982490253SJoe Wallwork LAPACKsyevFail(dim, M1); 138082490253SJoe Wallwork SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 138182490253SJoe Wallwork } 138220282da2SJoe Wallwork ierr = PetscFPTrapPop(); 138320282da2SJoe Wallwork 138420282da2SJoe Wallwork /* Compute square root and reciprocal */ 138520282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 138620282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 138720282da2SJoe Wallwork sqrtM1[i*dim+j] = 0.0; 138820282da2SJoe Wallwork isqrtM1[i*dim+j] = 0.0; 138920282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 139020282da2SJoe Wallwork sqrtk = PetscSqrtReal(evals1[k]); 139120282da2SJoe Wallwork sqrtM1[i*dim+j] += evecs[k*dim+i] * sqrtk * evecs[k*dim+j]; 139220282da2SJoe Wallwork isqrtM1[i*dim+j] += evecs[k*dim+i] * (1.0/sqrtk) * evecs[k*dim+j]; 139320282da2SJoe Wallwork } 139420282da2SJoe Wallwork } 139520282da2SJoe Wallwork } 139620282da2SJoe Wallwork 139720282da2SJoe Wallwork /* Map into the space spanned by the eigenvectors of M1 */ 139820282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 139920282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 140020282da2SJoe Wallwork evecs[i*dim+j] = 0.0; 140120282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 140220282da2SJoe Wallwork for (l = 0; l < dim; ++l) { 140320282da2SJoe Wallwork evecs[i*dim+j] += isqrtM1[i*dim+k] * M2[l*dim+k] * isqrtM1[j*dim+l]; 140420282da2SJoe Wallwork } 140520282da2SJoe Wallwork } 140620282da2SJoe Wallwork } 140720282da2SJoe Wallwork } 140820282da2SJoe Wallwork 140920282da2SJoe Wallwork /* Compute eigendecomposition */ 141020282da2SJoe Wallwork ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 141120282da2SJoe Wallwork #if defined(PETSC_USE_COMPLEX) 141220282da2SJoe Wallwork { 141320282da2SJoe Wallwork PetscReal *rwork; 141420282da2SJoe Wallwork ierr = PetscMalloc1(3*dim, &rwork);CHKERRQ(ierr); 141520282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, rwork, &lierr)); 141620282da2SJoe Wallwork ierr = PetscFree(rwork);CHKERRQ(ierr); 141720282da2SJoe Wallwork } 141820282da2SJoe Wallwork #else 141920282da2SJoe Wallwork PetscStackCallBLAS("LAPACKsyev", LAPACKsyev_("V", "U", &nb, evecs, &nb, evals, work, &lwork, &lierr)); 142020282da2SJoe Wallwork #endif 142182490253SJoe Wallwork if (lierr) { 142282490253SJoe Wallwork for (i = 0; i < dim; ++i) { 142382490253SJoe Wallwork for (j = 0; j < dim; ++j) { 142482490253SJoe Wallwork evecs[i*dim+j] = 0.0; 142582490253SJoe Wallwork for (k = 0; k < dim; ++k) { 142682490253SJoe Wallwork for (l = 0; l < dim; ++l) { 142782490253SJoe Wallwork evecs[i*dim+j] += isqrtM1[i*dim+k] * M2[l*dim+k] * isqrtM1[j*dim+l]; 142882490253SJoe Wallwork } 142982490253SJoe Wallwork } 143082490253SJoe Wallwork } 143182490253SJoe Wallwork } 143282490253SJoe Wallwork LAPACKsyevFail(dim, evecs); 143382490253SJoe Wallwork SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "Error in LAPACK routine %d", (int) lierr); 143482490253SJoe Wallwork } 143520282da2SJoe Wallwork ierr = PetscFPTrapPop(); 143620282da2SJoe Wallwork 143720282da2SJoe Wallwork /* Modify eigenvalues */ 143820282da2SJoe Wallwork for (i = 0; i < dim; ++i) evals[i] = PetscMin(evals[i], evals1[i]); 143920282da2SJoe Wallwork 144020282da2SJoe Wallwork /* Map back to get the intersection */ 144120282da2SJoe Wallwork for (i = 0; i < dim; ++i) { 144220282da2SJoe Wallwork for (j = 0; j < dim; ++j) { 144320282da2SJoe Wallwork M2[i*dim+j] = 0.0; 144420282da2SJoe Wallwork for (k = 0; k < dim; ++k) { 144520282da2SJoe Wallwork for (l = 0; l < dim; ++l) { 144620282da2SJoe Wallwork for (m = 0; m < dim; ++m) { 144720282da2SJoe Wallwork M2[i*dim+j] += sqrtM1[i*dim+k] * evecs[l*dim+k] * evals[l] * evecs[l*dim+m] * sqrtM1[j*dim+m]; 144820282da2SJoe Wallwork } 144920282da2SJoe Wallwork } 145020282da2SJoe Wallwork } 145120282da2SJoe Wallwork } 145220282da2SJoe Wallwork } 145320282da2SJoe Wallwork } 145420282da2SJoe Wallwork ierr = PetscFree(work);CHKERRQ(ierr); 145520282da2SJoe Wallwork } 145620282da2SJoe Wallwork ierr = PetscFree5(evecs, sqrtM1, isqrtM1, evals, evals1);CHKERRQ(ierr); 145720282da2SJoe Wallwork PetscFunctionReturn(0); 145820282da2SJoe Wallwork } 145920282da2SJoe Wallwork 1460*cb7bfe8cSJoe Wallwork /*@ 146120282da2SJoe Wallwork DMPlexMetricIntersection - Compute the intersection of a list of metrics 146220282da2SJoe Wallwork 146320282da2SJoe Wallwork Input Parameter: 146420282da2SJoe Wallwork + dm - The DM 146520282da2SJoe Wallwork . numMetrics - The number of metrics to be intersected 146620282da2SJoe Wallwork - metrics - The metrics to be intersected 146720282da2SJoe Wallwork 146820282da2SJoe Wallwork Output Parameter: 146920282da2SJoe Wallwork . metricInt - The intersected metric 147020282da2SJoe Wallwork 147120282da2SJoe Wallwork Level: beginner 147220282da2SJoe Wallwork 147320282da2SJoe Wallwork Notes: 147420282da2SJoe Wallwork 147520282da2SJoe Wallwork The intersection of a list of metrics has the maximal ellipsoid which fits within the ellipsoids of the component metrics. 147620282da2SJoe Wallwork 147720282da2SJoe Wallwork The implementation used here is only consistent with the maximal ellipsoid definition in the case numMetrics = 2. 147820282da2SJoe Wallwork 147920282da2SJoe Wallwork .seealso: DMPlexMetricIntersection2(), DMPlexMetricIntersection3(), DMPlexMetricAverage() 1480*cb7bfe8cSJoe Wallwork @*/ 148120282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection(DM dm, PetscInt numMetrics, Vec metrics[], Vec *metricInt) 148220282da2SJoe Wallwork { 148320282da2SJoe Wallwork PetscErrorCode ierr; 148420282da2SJoe Wallwork PetscInt dim, vStart, vEnd, v, i; 148520282da2SJoe Wallwork PetscScalar *met, *meti, *M, *Mi; 148620282da2SJoe Wallwork 148720282da2SJoe Wallwork PetscFunctionBegin; 148820282da2SJoe Wallwork if (numMetrics < 1) { SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Cannot intersect %d < 1 metrics", numMetrics); } 148920282da2SJoe Wallwork 149020282da2SJoe Wallwork /* Extract metadata from dm */ 149120282da2SJoe Wallwork ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 149220282da2SJoe Wallwork ierr = DMPlexMetricCreate(dm, 0, metricInt);CHKERRQ(ierr); 149320282da2SJoe Wallwork ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 149420282da2SJoe Wallwork 149520282da2SJoe Wallwork /* Copy over the first metric */ 149620282da2SJoe Wallwork ierr = VecCopy(metrics[0], *metricInt);CHKERRQ(ierr); 149720282da2SJoe Wallwork 149820282da2SJoe Wallwork /* Intersect subsequent metrics in turn */ 149920282da2SJoe Wallwork if (numMetrics > 1) { 150020282da2SJoe Wallwork ierr = VecGetArray(*metricInt, &met);CHKERRQ(ierr); 150120282da2SJoe Wallwork for (i = 1; i < numMetrics; ++i) { 150220282da2SJoe Wallwork ierr = VecGetArray(metrics[i], &meti);CHKERRQ(ierr); 150320282da2SJoe Wallwork for (v = vStart; v < vEnd; ++v) { 150420282da2SJoe Wallwork ierr = DMPlexPointLocalRef(dm, v, met, &M);CHKERRQ(ierr); 150520282da2SJoe Wallwork ierr = DMPlexPointLocalRef(dm, v, meti, &Mi);CHKERRQ(ierr); 150620282da2SJoe Wallwork ierr = DMPlexMetricIntersection_Private(dim, Mi, M);CHKERRQ(ierr); 150720282da2SJoe Wallwork } 150820282da2SJoe Wallwork ierr = VecRestoreArray(metrics[i], &meti);CHKERRQ(ierr); 150920282da2SJoe Wallwork } 151020282da2SJoe Wallwork ierr = VecRestoreArray(*metricInt, &met);CHKERRQ(ierr); 151120282da2SJoe Wallwork } 151220282da2SJoe Wallwork 151320282da2SJoe Wallwork PetscFunctionReturn(0); 151420282da2SJoe Wallwork } 151520282da2SJoe Wallwork 1516*cb7bfe8cSJoe Wallwork /*@ 151720282da2SJoe Wallwork DMPlexMetricIntersection2 - Compute the intersection of two metrics 151820282da2SJoe Wallwork 151920282da2SJoe Wallwork Input Parameter: 152020282da2SJoe Wallwork + dm - The DM 152120282da2SJoe Wallwork . metric1 - The first metric to be intersected 152220282da2SJoe Wallwork - metric2 - The second metric to be intersected 152320282da2SJoe Wallwork 152420282da2SJoe Wallwork Output Parameter: 152520282da2SJoe Wallwork . metricInt - The intersected metric 152620282da2SJoe Wallwork 152720282da2SJoe Wallwork Level: beginner 152820282da2SJoe Wallwork 152920282da2SJoe Wallwork .seealso: DMPlexMetricIntersection(), DMPlexMetricIntersection3() 1530*cb7bfe8cSJoe Wallwork @*/ 153120282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection2(DM dm, Vec metric1, Vec metric2, Vec *metricInt) 153220282da2SJoe Wallwork { 153320282da2SJoe Wallwork PetscErrorCode ierr; 153420282da2SJoe Wallwork Vec metrics[2] = {metric1, metric2}; 153520282da2SJoe Wallwork 153620282da2SJoe Wallwork PetscFunctionBegin; 153720282da2SJoe Wallwork ierr = DMPlexMetricIntersection(dm, 2, metrics, metricInt);CHKERRQ(ierr); 153820282da2SJoe Wallwork PetscFunctionReturn(0); 153920282da2SJoe Wallwork } 154020282da2SJoe Wallwork 1541*cb7bfe8cSJoe Wallwork /*@ 154220282da2SJoe Wallwork DMPlexMetricIntersection3 - Compute the intersection of three metrics 154320282da2SJoe Wallwork 154420282da2SJoe Wallwork Input Parameter: 154520282da2SJoe Wallwork + dm - The DM 154620282da2SJoe Wallwork . metric1 - The first metric to be intersected 154720282da2SJoe Wallwork . metric2 - The second metric to be intersected 154820282da2SJoe Wallwork - metric3 - The third metric to be intersected 154920282da2SJoe Wallwork 155020282da2SJoe Wallwork Output Parameter: 155120282da2SJoe Wallwork . metricInt - The intersected metric 155220282da2SJoe Wallwork 155320282da2SJoe Wallwork Level: beginner 155420282da2SJoe Wallwork 155520282da2SJoe Wallwork .seealso: DMPlexMetricIntersection(), DMPlexMetricIntersection2() 1556*cb7bfe8cSJoe Wallwork @*/ 155720282da2SJoe Wallwork PetscErrorCode DMPlexMetricIntersection3(DM dm, Vec metric1, Vec metric2, Vec metric3, Vec *metricInt) 155820282da2SJoe Wallwork { 155920282da2SJoe Wallwork PetscErrorCode ierr; 156020282da2SJoe Wallwork Vec metrics[3] = {metric1, metric2, metric3}; 156120282da2SJoe Wallwork 156220282da2SJoe Wallwork PetscFunctionBegin; 156320282da2SJoe Wallwork ierr = DMPlexMetricIntersection(dm, 3, metrics, metricInt);CHKERRQ(ierr); 156420282da2SJoe Wallwork PetscFunctionReturn(0); 156520282da2SJoe Wallwork } 1566