1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 284961fc4SMatthew G. Knepley #include <petscsf.h> 384961fc4SMatthew G. Knepley 484961fc4SMatthew G. Knepley /*@ 5b5a892a1SMatthew G. Knepley DMPlexOrientPoint - Act with the given orientation on the cone points of this mesh point, and update its use in the mesh. 627d0e99aSVaclav Hapla 727d0e99aSVaclav Hapla Not Collective 827d0e99aSVaclav Hapla 927d0e99aSVaclav Hapla Input Parameters: 1027d0e99aSVaclav Hapla + dm - The DM 11b5a892a1SMatthew G. Knepley . p - The mesh point 12b5a892a1SMatthew G. Knepley - o - The orientation 1327d0e99aSVaclav Hapla 1427d0e99aSVaclav Hapla Level: intermediate 1527d0e99aSVaclav Hapla 1627d0e99aSVaclav Hapla .seealso: DMPlexOrient(), DMPlexGetCone(), DMPlexGetConeOrientation(), DMPlexInterpolate(), DMPlexGetChart() 1727d0e99aSVaclav Hapla @*/ 18b5a892a1SMatthew G. Knepley PetscErrorCode DMPlexOrientPoint(DM dm, PetscInt p, PetscInt o) 1927d0e99aSVaclav Hapla { 20b5a892a1SMatthew G. Knepley DMPolytopeType ct; 21b5a892a1SMatthew G. Knepley const PetscInt *arr, *cone, *ornt, *support; 22b5a892a1SMatthew G. Knepley PetscInt *newcone, *newornt; 23b5a892a1SMatthew G. Knepley PetscInt coneSize, c, supportSize, s; 2427d0e99aSVaclav Hapla 2527d0e99aSVaclav Hapla PetscFunctionBegin; 2627d0e99aSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 28b5a892a1SMatthew G. Knepley arr = DMPolytopeTypeGetArrangment(ct, o); 29*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 30*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 31*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &ornt)); 32*9566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, coneSize, MPIU_INT, &newcone)); 33*9566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, coneSize, MPIU_INT, &newornt)); 34b5a892a1SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 35b5a892a1SMatthew G. Knepley DMPolytopeType ft; 36b5a892a1SMatthew G. Knepley PetscInt nO; 3727d0e99aSVaclav Hapla 38*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cone[c], &ft)); 39b5a892a1SMatthew G. Knepley nO = DMPolytopeTypeGetNumArrangments(ft)/2; 40b5a892a1SMatthew G. Knepley newcone[c] = cone[arr[c*2+0]]; 41b5a892a1SMatthew G. Knepley newornt[c] = DMPolytopeTypeComposeOrientation(ft, arr[c*2+1], ornt[arr[c*2+0]]); 422c71b3e2SJacob Faibussowitsch PetscCheckFalse(newornt[c] && (newornt[c] >= nO || newornt[c] < -nO),PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid orientation %D not in [%D,%D) for %s %D", newornt[c], -nO, nO, DMPolytopeTypes[ft], cone[c]); 4327d0e99aSVaclav Hapla } 44*9566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dm, p, newcone)); 45*9566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dm, p, newornt)); 46*9566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, coneSize, MPIU_INT, &newcone)); 47*9566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, coneSize, MPIU_INT, &newornt)); 48b5a892a1SMatthew G. Knepley /* Update orientation of this point in the support points */ 49*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &supportSize)); 50*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &support)); 51b5a892a1SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 52*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 53*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 54*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[s], &ornt)); 55b5a892a1SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 56b5a892a1SMatthew G. Knepley PetscInt po; 5727d0e99aSVaclav Hapla 58b5a892a1SMatthew G. Knepley if (cone[c] != p) continue; 59b5a892a1SMatthew G. Knepley /* ornt[c] * 0 = target = po * o so that po = ornt[c] * o^{-1} */ 60b5a892a1SMatthew G. Knepley po = DMPolytopeTypeComposeOrientationInv(ct, ornt[c], o); 61*9566063dSJacob Faibussowitsch PetscCall(DMPlexInsertConeOrientation(dm, support[s], c, po)); 6284961fc4SMatthew G. Knepley } 6384961fc4SMatthew G. Knepley } 6484961fc4SMatthew G. Knepley PetscFunctionReturn(0); 6584961fc4SMatthew G. Knepley } 6684961fc4SMatthew G. Knepley 677b310ce2SMatthew G. Knepley /* 687b310ce2SMatthew G. Knepley - Checks face match 697b310ce2SMatthew G. Knepley - Flips non-matching 707b310ce2SMatthew G. Knepley - Inserts faces of support cells in FIFO 717b310ce2SMatthew G. Knepley */ 727b2de0fdSMatthew G. Knepley static PetscErrorCode DMPlexCheckFace_Internal(DM dm, PetscInt *faceFIFO, PetscInt *fTop, PetscInt *fBottom, PetscInt cStart, PetscInt fStart, PetscInt fEnd, PetscBT seenCells, PetscBT flippedCells, PetscBT seenFaces) 737b310ce2SMatthew G. Knepley { 747b310ce2SMatthew G. Knepley const PetscInt *support, *coneA, *coneB, *coneOA, *coneOB; 757b310ce2SMatthew G. Knepley PetscInt supportSize, coneSizeA, coneSizeB, posA = -1, posB = -1; 767b2de0fdSMatthew G. Knepley PetscInt face, dim, seenA, flippedA, seenB, flippedB, mismatch, c; 777b310ce2SMatthew G. Knepley 787b310ce2SMatthew G. Knepley PetscFunctionBegin; 797b310ce2SMatthew G. Knepley face = faceFIFO[(*fTop)++]; 80*9566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 81*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 82*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 837b310ce2SMatthew G. Knepley if (supportSize < 2) PetscFunctionReturn(0); 842c71b3e2SJacob Faibussowitsch PetscCheckFalse(supportSize != 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Faces should separate only two cells, not %d", supportSize); 857b310ce2SMatthew G. Knepley seenA = PetscBTLookup(seenCells, support[0]-cStart); 867b310ce2SMatthew G. Knepley flippedA = PetscBTLookup(flippedCells, support[0]-cStart) ? 1 : 0; 877b310ce2SMatthew G. Knepley seenB = PetscBTLookup(seenCells, support[1]-cStart); 887b310ce2SMatthew G. Knepley flippedB = PetscBTLookup(flippedCells, support[1]-cStart) ? 1 : 0; 897b310ce2SMatthew G. Knepley 90*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[0], &coneSizeA)); 91*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[1], &coneSizeB)); 92*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[0], &coneA)); 93*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[1], &coneB)); 94*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[0], &coneOA)); 95*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[1], &coneOB)); 967b310ce2SMatthew G. Knepley for (c = 0; c < coneSizeA; ++c) { 977b310ce2SMatthew G. Knepley if (!PetscBTLookup(seenFaces, coneA[c]-fStart)) { 987b310ce2SMatthew G. Knepley faceFIFO[(*fBottom)++] = coneA[c]; 99*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenFaces, coneA[c]-fStart)); 1007b310ce2SMatthew G. Knepley } 1017b310ce2SMatthew G. Knepley if (coneA[c] == face) posA = c; 1022c71b3e2SJacob Faibussowitsch PetscCheckFalse(*fBottom > fEnd-fStart,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Face %d was pushed exceeding capacity %d > %d", coneA[c], *fBottom, fEnd-fStart); 1037b310ce2SMatthew G. Knepley } 1042c71b3e2SJacob Faibussowitsch PetscCheckFalse(posA < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %d could not be located in cell %d", face, support[0]); 1057b310ce2SMatthew G. Knepley for (c = 0; c < coneSizeB; ++c) { 1067b310ce2SMatthew G. Knepley if (!PetscBTLookup(seenFaces, coneB[c]-fStart)) { 1077b310ce2SMatthew G. Knepley faceFIFO[(*fBottom)++] = coneB[c]; 108*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenFaces, coneB[c]-fStart)); 1097b310ce2SMatthew G. Knepley } 1107b310ce2SMatthew G. Knepley if (coneB[c] == face) posB = c; 1112c71b3e2SJacob Faibussowitsch PetscCheckFalse(*fBottom > fEnd-fStart,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Face %d was pushed exceeding capacity %d > %d", coneA[c], *fBottom, fEnd-fStart); 1127b310ce2SMatthew G. Knepley } 1132c71b3e2SJacob Faibussowitsch PetscCheckFalse(posB < 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Face %d could not be located in cell %d", face, support[1]); 1147b310ce2SMatthew G. Knepley 1157b310ce2SMatthew G. Knepley if (dim == 1) { 1167b310ce2SMatthew G. Knepley mismatch = posA == posB; 1177b310ce2SMatthew G. Knepley } else { 1187b310ce2SMatthew G. Knepley mismatch = coneOA[posA] == coneOB[posB]; 1197b310ce2SMatthew G. Knepley } 1207b310ce2SMatthew G. Knepley 1217b310ce2SMatthew G. Knepley if (mismatch ^ (flippedA ^ flippedB)) { 1222c71b3e2SJacob Faibussowitsch PetscCheckFalse(seenA && seenB,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Previously seen cells %d and %d do not match: Fault mesh is non-orientable", support[0], support[1]); 1237b310ce2SMatthew G. Knepley if (!seenA && !flippedA) { 124*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(flippedCells, support[0]-cStart)); 1257b310ce2SMatthew G. Knepley } else if (!seenB && !flippedB) { 126*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(flippedCells, support[1]-cStart)); 1277b310ce2SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent mesh orientation: Fault mesh is non-orientable"); 1282c71b3e2SJacob Faibussowitsch } else PetscCheckFalse(mismatch && flippedA && flippedB,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Attempt to flip already flipped cell: Fault mesh is non-orientable"); 129*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenCells, support[0]-cStart)); 130*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenCells, support[1]-cStart)); 1317b310ce2SMatthew G. Knepley PetscFunctionReturn(0); 1327b310ce2SMatthew G. Knepley } 1337b310ce2SMatthew G. Knepley 13484961fc4SMatthew G. Knepley /*@ 13584961fc4SMatthew G. Knepley DMPlexOrient - Give a consistent orientation to the input mesh 13684961fc4SMatthew G. Knepley 13784961fc4SMatthew G. Knepley Input Parameters: 13884961fc4SMatthew G. Knepley . dm - The DM 13984961fc4SMatthew G. Knepley 14084961fc4SMatthew G. Knepley Note: The orientation data for the DM are change in-place. 14184961fc4SMatthew G. Knepley $ This routine will fail for non-orientable surfaces, such as the Moebius strip. 14284961fc4SMatthew G. Knepley 14384961fc4SMatthew G. Knepley Level: advanced 14484961fc4SMatthew G. Knepley 14584961fc4SMatthew G. Knepley .seealso: DMCreate(), DMPLEX 14684961fc4SMatthew G. Knepley @*/ 14784961fc4SMatthew G. Knepley PetscErrorCode DMPlexOrient(DM dm) 14884961fc4SMatthew G. Knepley { 14984961fc4SMatthew G. Knepley MPI_Comm comm; 150e1d83109SMatthew G. Knepley PetscSF sf; 151e1d83109SMatthew G. Knepley const PetscInt *lpoints; 152e1d83109SMatthew G. Knepley const PetscSFNode *rpoints; 153e1d83109SMatthew G. Knepley PetscSFNode *rorntComp = NULL, *lorntComp = NULL; 154e1d83109SMatthew G. Knepley PetscInt *numNeighbors, **neighbors; 155e1d83109SMatthew G. Knepley PetscSFNode *nrankComp; 156e1d83109SMatthew G. Knepley PetscBool *match, *flipped; 15784961fc4SMatthew G. Knepley PetscBT seenCells, flippedCells, seenFaces; 158e1d83109SMatthew G. Knepley PetscInt *faceFIFO, fTop, fBottom, *cellComp, *faceComp; 1597cadcfe8SMatthew G. Knepley PetscInt numLeaves, numRoots, dim, h, cStart, cEnd, c, cell, fStart, fEnd, face, off, totNeighbors = 0; 16039526728SToby Isaac PetscMPIInt rank, size, numComponents, comp = 0; 16139526728SToby Isaac PetscBool flg, flg2; 162a17aa47eSToby Isaac PetscViewer viewer = NULL, selfviewer = NULL; 16384961fc4SMatthew G. Knepley 16484961fc4SMatthew G. Knepley PetscFunctionBegin; 165*9566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 166*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 167*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 168*9566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-orientation_view", &flg)); 169*9566063dSJacob Faibussowitsch PetscCall(PetscOptionsHasName(((PetscObject) dm)->options,((PetscObject) dm)->prefix, "-orientation_view_synchronized", &flg2)); 170*9566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 171*9566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &lpoints, &rpoints)); 17284961fc4SMatthew G. Knepley /* Truth Table 17384961fc4SMatthew G. Knepley mismatch flips do action mismatch flipA ^ flipB action 17484961fc4SMatthew G. Knepley F 0 flips no F F F 17584961fc4SMatthew G. Knepley F 1 flip yes F T T 17684961fc4SMatthew G. Knepley F 2 flips no T F T 17784961fc4SMatthew G. Knepley T 0 flips yes T T F 17884961fc4SMatthew G. Knepley T 1 flip no 17984961fc4SMatthew G. Knepley T 2 flips yes 18084961fc4SMatthew G. Knepley */ 181*9566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 182*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dm, &h)); 183*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h, &cStart, &cEnd)); 184*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, h+1, &fStart, &fEnd)); 185*9566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(cEnd - cStart, &seenCells)); 186*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(cEnd - cStart, seenCells)); 187*9566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(cEnd - cStart, &flippedCells)); 188*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(cEnd - cStart, flippedCells)); 189*9566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(fEnd - fStart, &seenFaces)); 190*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(fEnd - fStart, seenFaces)); 191*9566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(fEnd - fStart, &faceFIFO, cEnd-cStart, &cellComp, fEnd-fStart, &faceComp)); 192e1d83109SMatthew G. Knepley /* 193e1d83109SMatthew G. Knepley OLD STYLE 194e1d83109SMatthew G. Knepley - Add an integer array over cells and faces (component) for connected component number 195e1d83109SMatthew G. Knepley Foreach component 196e1d83109SMatthew G. Knepley - Mark the initial cell as seen 197e1d83109SMatthew G. Knepley - Process component as usual 198e1d83109SMatthew G. Knepley - Set component for all seenCells 199e1d83109SMatthew G. Knepley - Wipe seenCells and seenFaces (flippedCells can stay) 200e1d83109SMatthew G. Knepley - Generate parallel adjacency for component using SF and seenFaces 201e1d83109SMatthew G. Knepley - Collect numComponents adj data from each proc to 0 202e1d83109SMatthew G. Knepley - Build same serial graph 203e1d83109SMatthew G. Knepley - Use same solver 204e1d83109SMatthew G. Knepley - Use Scatterv to to send back flipped flags for each component 205e1d83109SMatthew G. Knepley - Negate flippedCells by component 206e1d83109SMatthew G. Knepley 207e1d83109SMatthew G. Knepley NEW STYLE 208e1d83109SMatthew G. Knepley - Create the adj on each process 209e1d83109SMatthew G. Knepley - Bootstrap to complete graph on proc 0 210e1d83109SMatthew G. Knepley */ 211e1d83109SMatthew G. Knepley /* Loop over components */ 212e1d83109SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) cellComp[cell-cStart] = -1; 213e1d83109SMatthew G. Knepley do { 214e1d83109SMatthew G. Knepley /* Look for first unmarked cell */ 215e1d83109SMatthew G. Knepley for (cell = cStart; cell < cEnd; ++cell) if (cellComp[cell-cStart] < 0) break; 216e1d83109SMatthew G. Knepley if (cell >= cEnd) break; 217e1d83109SMatthew G. Knepley /* Initialize FIFO with first cell in component */ 218e1d83109SMatthew G. Knepley { 21984961fc4SMatthew G. Knepley const PetscInt *cone; 22084961fc4SMatthew G. Knepley PetscInt coneSize; 22184961fc4SMatthew G. Knepley 222e1d83109SMatthew G. Knepley fTop = fBottom = 0; 223*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 224*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 22584961fc4SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 22684961fc4SMatthew G. Knepley faceFIFO[fBottom++] = cone[c]; 227*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenFaces, cone[c]-fStart)); 22884961fc4SMatthew G. Knepley } 229*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenCells, cell-cStart)); 23084961fc4SMatthew G. Knepley } 23184961fc4SMatthew G. Knepley /* Consider each face in FIFO */ 23284961fc4SMatthew G. Knepley while (fTop < fBottom) { 233*9566063dSJacob Faibussowitsch PetscCall(DMPlexCheckFace_Internal(dm, faceFIFO, &fTop, &fBottom, cStart, fStart, fEnd, seenCells, flippedCells, seenFaces)); 23484961fc4SMatthew G. Knepley } 235e1d83109SMatthew G. Knepley /* Set component for cells and faces */ 236e1d83109SMatthew G. Knepley for (cell = 0; cell < cEnd-cStart; ++cell) { 237e1d83109SMatthew G. Knepley if (PetscBTLookup(seenCells, cell)) cellComp[cell] = comp; 238e1d83109SMatthew G. Knepley } 239e1d83109SMatthew G. Knepley for (face = 0; face < fEnd-fStart; ++face) { 240e1d83109SMatthew G. Knepley if (PetscBTLookup(seenFaces, face)) faceComp[face] = comp; 241e1d83109SMatthew G. Knepley } 242e1d83109SMatthew G. Knepley /* Wipe seenCells and seenFaces for next component */ 243*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(fEnd - fStart, seenFaces)); 244*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(cEnd - cStart, seenCells)); 245e1d83109SMatthew G. Knepley ++comp; 246e1d83109SMatthew G. Knepley } while (1); 247e1d83109SMatthew G. Knepley numComponents = comp; 24884961fc4SMatthew G. Knepley if (flg) { 24984961fc4SMatthew G. Knepley PetscViewer v; 25084961fc4SMatthew G. Knepley 251*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(comm, &v)); 252*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(v)); 253*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(v, "[%d]BT for serial flipped cells:\n", rank)); 254*9566063dSJacob Faibussowitsch PetscCall(PetscBTView(cEnd-cStart, flippedCells, v)); 255*9566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(v)); 256*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(v)); 25784961fc4SMatthew G. Knepley } 25884961fc4SMatthew G. Knepley /* Now all subdomains are oriented, but we need a consistent parallel orientation */ 25984961fc4SMatthew G. Knepley if (numLeaves >= 0) { 260e1d83109SMatthew G. Knepley /* Store orientations of boundary faces*/ 261*9566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(numRoots,&rorntComp,numRoots,&lorntComp)); 26284961fc4SMatthew G. Knepley for (face = fStart; face < fEnd; ++face) { 263e1d83109SMatthew G. Knepley const PetscInt *cone, *support, *ornt; 264e1d83109SMatthew G. Knepley PetscInt coneSize, supportSize; 265e1d83109SMatthew G. Knepley 266*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 26784961fc4SMatthew G. Knepley if (supportSize != 1) continue; 268*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 26984961fc4SMatthew G. Knepley 270*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[0], &cone)); 271*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[0], &coneSize)); 272*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, support[0], &ornt)); 27384961fc4SMatthew G. Knepley for (c = 0; c < coneSize; ++c) if (cone[c] == face) break; 27484961fc4SMatthew G. Knepley if (dim == 1) { 27584961fc4SMatthew G. Knepley /* Use cone position instead, shifted to -1 or 1 */ 2766e1eb25cSMatthew G. Knepley if (PetscBTLookup(flippedCells, support[0]-cStart)) rorntComp[face].rank = 1-c*2; 2776e1eb25cSMatthew G. Knepley else rorntComp[face].rank = c*2-1; 27884961fc4SMatthew G. Knepley } else { 279e1d83109SMatthew G. Knepley if (PetscBTLookup(flippedCells, support[0]-cStart)) rorntComp[face].rank = ornt[c] < 0 ? -1 : 1; 280e1d83109SMatthew G. Knepley else rorntComp[face].rank = ornt[c] < 0 ? 1 : -1; 28184961fc4SMatthew G. Knepley } 282e1d83109SMatthew G. Knepley rorntComp[face].index = faceComp[face-fStart]; 28384961fc4SMatthew G. Knepley } 284e1d83109SMatthew G. Knepley /* Communicate boundary edge orientations */ 285*9566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, rorntComp, lorntComp,MPI_REPLACE)); 286*9566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, rorntComp, lorntComp,MPI_REPLACE)); 287e1d83109SMatthew G. Knepley } 288e1d83109SMatthew G. Knepley /* Get process adjacency */ 289*9566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numComponents, &numNeighbors, numComponents, &neighbors)); 290a17aa47eSToby Isaac viewer = PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)); 291*9566063dSJacob Faibussowitsch if (flg2) PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 292*9566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&selfviewer)); 293e1d83109SMatthew G. Knepley for (comp = 0; comp < numComponents; ++comp) { 294e1d83109SMatthew G. Knepley PetscInt l, n; 29584961fc4SMatthew G. Knepley 296e1d83109SMatthew G. Knepley numNeighbors[comp] = 0; 297*9566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(numLeaves, 0), &neighbors[comp])); 298e1d83109SMatthew G. Knepley /* I know this is p^2 time in general, but for bounded degree its alright */ 299e1d83109SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 300e1d83109SMatthew G. Knepley const PetscInt face = lpoints[l]; 301e1d83109SMatthew G. Knepley 302e1d83109SMatthew G. Knepley /* Find a representative face (edge) separating pairs of procs */ 303e1d83109SMatthew G. Knepley if ((face >= fStart) && (face < fEnd) && (faceComp[face-fStart] == comp)) { 304269a49d5SMatthew G. Knepley const PetscInt rrank = rpoints[l].rank; 305e1d83109SMatthew G. Knepley const PetscInt rcomp = lorntComp[face].index; 306e1d83109SMatthew G. Knepley 307269a49d5SMatthew G. Knepley for (n = 0; n < numNeighbors[comp]; ++n) if ((rrank == rpoints[neighbors[comp][n]].rank) && (rcomp == lorntComp[lpoints[neighbors[comp][n]]].index)) break; 308e1d83109SMatthew G. Knepley if (n >= numNeighbors[comp]) { 309e1d83109SMatthew G. Knepley PetscInt supportSize; 310e1d83109SMatthew G. Knepley 311*9566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 3122c71b3e2SJacob Faibussowitsch PetscCheckFalse(supportSize != 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Boundary faces should see one cell, not %d", supportSize); 313*9566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerASCIIPrintf(selfviewer, "[%d]: component %d, Found representative leaf %d (face %d) connecting to face %d on (%d, %d) with orientation %d\n", rank, comp, l, face, rpoints[l].index, rrank, rcomp, lorntComp[face].rank)); 314e1d83109SMatthew G. Knepley neighbors[comp][numNeighbors[comp]++] = l; 315e1d83109SMatthew G. Knepley } 316e1d83109SMatthew G. Knepley } 317e1d83109SMatthew G. Knepley } 318e1d83109SMatthew G. Knepley totNeighbors += numNeighbors[comp]; 319e1d83109SMatthew G. Knepley } 320*9566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&selfviewer)); 321*9566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 322*9566063dSJacob Faibussowitsch if (flg2) PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 323*9566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(totNeighbors, &nrankComp, totNeighbors, &match)); 324e1d83109SMatthew G. Knepley for (comp = 0, off = 0; comp < numComponents; ++comp) { 325e1d83109SMatthew G. Knepley PetscInt n; 326e1d83109SMatthew G. Knepley 327e1d83109SMatthew G. Knepley for (n = 0; n < numNeighbors[comp]; ++n, ++off) { 328e1d83109SMatthew G. Knepley const PetscInt face = lpoints[neighbors[comp][n]]; 329e1d83109SMatthew G. Knepley const PetscInt o = rorntComp[face].rank*lorntComp[face].rank; 330e1d83109SMatthew G. Knepley 331e1d83109SMatthew G. Knepley if (o < 0) match[off] = PETSC_TRUE; 332e1d83109SMatthew G. Knepley else if (o > 0) match[off] = PETSC_FALSE; 33398921bdaSJacob Faibussowitsch else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid face %d (%d, %d) neighbor: %d comp: %d", face, rorntComp[face], lorntComp[face], neighbors[comp][n], comp); 334e1d83109SMatthew G. Knepley nrankComp[off].rank = rpoints[neighbors[comp][n]].rank; 335e1d83109SMatthew G. Knepley nrankComp[off].index = lorntComp[lpoints[neighbors[comp][n]]].index; 336e1d83109SMatthew G. Knepley } 337*9566063dSJacob Faibussowitsch PetscCall(PetscFree(neighbors[comp])); 33884961fc4SMatthew G. Knepley } 33984961fc4SMatthew G. Knepley /* Collect the graph on 0 */ 340e1d83109SMatthew G. Knepley if (numLeaves >= 0) { 34184961fc4SMatthew G. Knepley Mat G; 34284961fc4SMatthew G. Knepley PetscBT seenProcs, flippedProcs; 34384961fc4SMatthew G. Knepley PetscInt *procFIFO, pTop, pBottom; 3447cadcfe8SMatthew G. Knepley PetscInt *N = NULL, *Noff; 345e1d83109SMatthew G. Knepley PetscSFNode *adj = NULL; 34684961fc4SMatthew G. Knepley PetscBool *val = NULL; 3477cadcfe8SMatthew G. Knepley PetscMPIInt *recvcounts = NULL, *displs = NULL, *Nc, p, o; 3489852e123SBarry Smith PetscMPIInt size = 0; 34984961fc4SMatthew G. Knepley 350*9566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(numComponents, &flipped)); 351*9566063dSJacob Faibussowitsch if (rank == 0) PetscCallMPI(MPI_Comm_size(comm, &size)); 352*9566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(size, &recvcounts, size+1, &displs, size, &Nc, size+1, &Noff)); 353*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gather(&numComponents, 1, MPI_INT, Nc, 1, MPI_INT, 0, comm)); 3549852e123SBarry Smith for (p = 0; p < size; ++p) { 355e1d83109SMatthew G. Knepley displs[p+1] = displs[p] + Nc[p]; 356e1d83109SMatthew G. Knepley } 357*9566063dSJacob Faibussowitsch if (rank == 0) PetscCall(PetscMalloc1(displs[size],&N)); 358*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gatherv(numNeighbors, numComponents, MPIU_INT, N, Nc, displs, MPIU_INT, 0, comm)); 3599852e123SBarry Smith for (p = 0, o = 0; p < size; ++p) { 360e1d83109SMatthew G. Knepley recvcounts[p] = 0; 361e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c, ++o) recvcounts[p] += N[o]; 36284961fc4SMatthew G. Knepley displs[p+1] = displs[p] + recvcounts[p]; 36384961fc4SMatthew G. Knepley } 364*9566063dSJacob Faibussowitsch if (rank == 0) PetscCall(PetscMalloc2(displs[size], &adj, displs[size], &val)); 365*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gatherv(nrankComp, totNeighbors, MPIU_2INT, adj, recvcounts, displs, MPIU_2INT, 0, comm)); 366*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Gatherv(match, totNeighbors, MPIU_BOOL, val, recvcounts, displs, MPIU_BOOL, 0, comm)); 367*9566063dSJacob Faibussowitsch PetscCall(PetscFree2(numNeighbors, neighbors)); 368dd400576SPatrick Sanan if (rank == 0) { 3699852e123SBarry Smith for (p = 1; p <= size; ++p) {Noff[p] = Noff[p-1] + Nc[p-1];} 370a83982f3SMatthew G. Knepley if (flg) { 371e1d83109SMatthew G. Knepley PetscInt n; 372e1d83109SMatthew G. Knepley 3739852e123SBarry Smith for (p = 0, off = 0; p < size; ++p) { 374e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c) { 375*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Proc %d Comp %d:\n", p, c)); 376e1d83109SMatthew G. Knepley for (n = 0; n < N[Noff[p]+c]; ++n, ++off) { 377*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " edge (%d, %d) (%d):\n", adj[off].rank, adj[off].index, val[off])); 378e1d83109SMatthew G. Knepley } 37984961fc4SMatthew G. Knepley } 38084961fc4SMatthew G. Knepley } 38184961fc4SMatthew G. Knepley } 38284961fc4SMatthew G. Knepley /* Symmetrize the graph */ 383*9566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &G)); 384*9566063dSJacob Faibussowitsch PetscCall(MatSetSizes(G, Noff[size], Noff[size], Noff[size], Noff[size])); 385*9566063dSJacob Faibussowitsch PetscCall(MatSetUp(G)); 3869852e123SBarry Smith for (p = 0, off = 0; p < size; ++p) { 387e1d83109SMatthew G. Knepley for (c = 0; c < Nc[p]; ++c) { 388e1d83109SMatthew G. Knepley const PetscInt r = Noff[p]+c; 389e1d83109SMatthew G. Knepley PetscInt n; 390e1d83109SMatthew G. Knepley 391e1d83109SMatthew G. Knepley for (n = 0; n < N[r]; ++n, ++off) { 392e1d83109SMatthew G. Knepley const PetscInt q = Noff[adj[off].rank] + adj[off].index; 393e1d83109SMatthew G. Knepley const PetscScalar o = val[off] ? 1.0 : 0.0; 39484961fc4SMatthew G. Knepley 395*9566063dSJacob Faibussowitsch PetscCall(MatSetValues(G, 1, &r, 1, &q, &o, INSERT_VALUES)); 396*9566063dSJacob Faibussowitsch PetscCall(MatSetValues(G, 1, &q, 1, &r, &o, INSERT_VALUES)); 39784961fc4SMatthew G. Knepley } 39884961fc4SMatthew G. Knepley } 399e1d83109SMatthew G. Knepley } 400*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(G, MAT_FINAL_ASSEMBLY)); 401*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(G, MAT_FINAL_ASSEMBLY)); 40284961fc4SMatthew G. Knepley 403*9566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(Noff[size], &seenProcs)); 404*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(Noff[size], seenProcs)); 405*9566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(Noff[size], &flippedProcs)); 406*9566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(Noff[size], flippedProcs)); 407*9566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Noff[size], &procFIFO)); 40884961fc4SMatthew G. Knepley pTop = pBottom = 0; 4099852e123SBarry Smith for (p = 0; p < Noff[size]; ++p) { 41084961fc4SMatthew G. Knepley if (PetscBTLookup(seenProcs, p)) continue; 41184961fc4SMatthew G. Knepley /* Initialize FIFO with next proc */ 41284961fc4SMatthew G. Knepley procFIFO[pBottom++] = p; 413*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenProcs, p)); 41484961fc4SMatthew G. Knepley /* Consider each proc in FIFO */ 41584961fc4SMatthew G. Knepley while (pTop < pBottom) { 41684961fc4SMatthew G. Knepley const PetscScalar *ornt; 41784961fc4SMatthew G. Knepley const PetscInt *neighbors; 418e1d83109SMatthew G. Knepley PetscInt proc, nproc, seen, flippedA, flippedB, mismatch, numNeighbors, n; 41984961fc4SMatthew G. Knepley 42084961fc4SMatthew G. Knepley proc = procFIFO[pTop++]; 42184961fc4SMatthew G. Knepley flippedA = PetscBTLookup(flippedProcs, proc) ? 1 : 0; 422*9566063dSJacob Faibussowitsch PetscCall(MatGetRow(G, proc, &numNeighbors, &neighbors, &ornt)); 42384961fc4SMatthew G. Knepley /* Loop over neighboring procs */ 42484961fc4SMatthew G. Knepley for (n = 0; n < numNeighbors; ++n) { 42584961fc4SMatthew G. Knepley nproc = neighbors[n]; 42684961fc4SMatthew G. Knepley mismatch = PetscRealPart(ornt[n]) > 0.5 ? 0 : 1; 42784961fc4SMatthew G. Knepley seen = PetscBTLookup(seenProcs, nproc); 42884961fc4SMatthew G. Knepley flippedB = PetscBTLookup(flippedProcs, nproc) ? 1 : 0; 42984961fc4SMatthew G. Knepley 43084961fc4SMatthew G. Knepley if (mismatch ^ (flippedA ^ flippedB)) { 43128b400f6SJacob Faibussowitsch PetscCheck(!seen,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Previously seen procs %d and %d do not match: Fault mesh is non-orientable", proc, nproc); 43284961fc4SMatthew G. Knepley if (!flippedB) { 433*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(flippedProcs, nproc)); 43484961fc4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Inconsistent mesh orientation: Fault mesh is non-orientable"); 4352c71b3e2SJacob Faibussowitsch } else PetscCheckFalse(mismatch && flippedA && flippedB,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Attempt to flip already flipped cell: Fault mesh is non-orientable"); 43684961fc4SMatthew G. Knepley if (!seen) { 43784961fc4SMatthew G. Knepley procFIFO[pBottom++] = nproc; 438*9566063dSJacob Faibussowitsch PetscCall(PetscBTSet(seenProcs, nproc)); 43984961fc4SMatthew G. Knepley } 44084961fc4SMatthew G. Knepley } 44184961fc4SMatthew G. Knepley } 44284961fc4SMatthew G. Knepley } 443*9566063dSJacob Faibussowitsch PetscCall(PetscFree(procFIFO)); 444*9566063dSJacob Faibussowitsch PetscCall(MatDestroy(&G)); 445*9566063dSJacob Faibussowitsch PetscCall(PetscFree2(adj, val)); 446*9566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&seenProcs)); 44784961fc4SMatthew G. Knepley } 448e1d83109SMatthew G. Knepley /* Scatter flip flags */ 449e1d83109SMatthew G. Knepley { 450e1d83109SMatthew G. Knepley PetscBool *flips = NULL; 451e1d83109SMatthew G. Knepley 452dd400576SPatrick Sanan if (rank == 0) { 453*9566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Noff[size], &flips)); 4549852e123SBarry Smith for (p = 0; p < Noff[size]; ++p) { 455e1d83109SMatthew G. Knepley flips[p] = PetscBTLookup(flippedProcs, p) ? PETSC_TRUE : PETSC_FALSE; 456*9566063dSJacob Faibussowitsch if (flg && flips[p]) PetscCall(PetscPrintf(comm, "Flipping Proc+Comp %d:\n", p)); 457e1d83109SMatthew G. Knepley } 4589852e123SBarry Smith for (p = 0; p < size; ++p) { 459e1d83109SMatthew G. Knepley displs[p+1] = displs[p] + Nc[p]; 460e1d83109SMatthew G. Knepley } 461e1d83109SMatthew G. Knepley } 462*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scatterv(flips, Nc, displs, MPIU_BOOL, flipped, numComponents, MPIU_BOOL, 0, comm)); 463*9566063dSJacob Faibussowitsch PetscCall(PetscFree(flips)); 46484961fc4SMatthew G. Knepley } 465*9566063dSJacob Faibussowitsch if (rank == 0) PetscCall(PetscBTDestroy(&flippedProcs)); 466*9566063dSJacob Faibussowitsch PetscCall(PetscFree(N)); 467*9566063dSJacob Faibussowitsch PetscCall(PetscFree4(recvcounts, displs, Nc, Noff)); 468*9566063dSJacob Faibussowitsch PetscCall(PetscFree2(nrankComp, match)); 469e1d83109SMatthew G. Knepley 470e1d83109SMatthew G. Knepley /* Decide whether to flip cells in each component */ 471*9566063dSJacob Faibussowitsch for (c = 0; c < cEnd-cStart; ++c) {if (flipped[cellComp[c]]) PetscCall(PetscBTNegate(flippedCells, c));} 472*9566063dSJacob Faibussowitsch PetscCall(PetscFree(flipped)); 47384961fc4SMatthew G. Knepley } 47484961fc4SMatthew G. Knepley if (flg) { 47584961fc4SMatthew G. Knepley PetscViewer v; 47684961fc4SMatthew G. Knepley 477*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(comm, &v)); 478*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(v)); 479*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(v, "[%d]BT for parallel flipped cells:\n", rank)); 480*9566063dSJacob Faibussowitsch PetscCall(PetscBTView(cEnd-cStart, flippedCells, v)); 481*9566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(v)); 482*9566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(v)); 48384961fc4SMatthew G. Knepley } 48484961fc4SMatthew G. Knepley /* Reverse flipped cells in the mesh */ 48584961fc4SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 4860d366550SMatthew G. Knepley if (PetscBTLookup(flippedCells, c-cStart)) { 487*9566063dSJacob Faibussowitsch PetscCall(DMPlexOrientPoint(dm, c, -1)); 4880d366550SMatthew G. Knepley } 48984961fc4SMatthew G. Knepley } 490*9566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&seenCells)); 491*9566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&flippedCells)); 492*9566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&seenFaces)); 493*9566063dSJacob Faibussowitsch PetscCall(PetscFree2(numNeighbors, neighbors)); 494*9566063dSJacob Faibussowitsch PetscCall(PetscFree2(rorntComp, lorntComp)); 495*9566063dSJacob Faibussowitsch PetscCall(PetscFree3(faceFIFO, cellComp, faceComp)); 49684961fc4SMatthew G. Knepley PetscFunctionReturn(0); 49784961fc4SMatthew G. Knepley } 498