xref: /petsc/src/dm/impls/plex/plexsubmesh.c (revision c6a7a37075f8bf8d34d92c4910d42445b7a3482d)
1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h>  /*I      "petscdmplex.h"    I*/
2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"   I*/
30c312b8eSJed Brown #include <petscsf.h>
4e6ccafaeSMatthew G Knepley 
5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid)
6d71ae5a4SJacob Faibussowitsch {
7412e9a14SMatthew G. Knepley   DMPolytopeType ct;
8412e9a14SMatthew G. Knepley 
9412e9a14SMatthew G. Knepley   PetscFunctionBegin;
109566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, p, &ct));
11412e9a14SMatthew G. Knepley   switch (ct) {
12412e9a14SMatthew G. Knepley   case DM_POLYTOPE_POINT_PRISM_TENSOR:
13412e9a14SMatthew G. Knepley   case DM_POLYTOPE_SEG_PRISM_TENSOR:
14412e9a14SMatthew G. Knepley   case DM_POLYTOPE_TRI_PRISM_TENSOR:
15d71ae5a4SJacob Faibussowitsch   case DM_POLYTOPE_QUAD_PRISM_TENSOR:
16d71ae5a4SJacob Faibussowitsch     *isHybrid = PETSC_TRUE;
17d71ae5a4SJacob Faibussowitsch     break;
18d71ae5a4SJacob Faibussowitsch   default:
19d71ae5a4SJacob Faibussowitsch     *isHybrid = PETSC_FALSE;
20d71ae5a4SJacob Faibussowitsch     break;
21412e9a14SMatthew G. Knepley   }
223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23412e9a14SMatthew G. Knepley }
24412e9a14SMatthew G. Knepley 
25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd)
26d71ae5a4SJacob Faibussowitsch {
27412e9a14SMatthew G. Knepley   DMLabel ctLabel;
28412e9a14SMatthew G. Knepley 
29412e9a14SMatthew G. Knepley   PetscFunctionBegin;
30412e9a14SMatthew G. Knepley   if (cStart) *cStart = -1;
31412e9a14SMatthew G. Knepley   if (cEnd) *cEnd = -1;
329566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel));
33412e9a14SMatthew G. Knepley   switch (dim) {
34d71ae5a4SJacob Faibussowitsch   case 1:
35d71ae5a4SJacob Faibussowitsch     PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));
36d71ae5a4SJacob Faibussowitsch     break;
37d71ae5a4SJacob Faibussowitsch   case 2:
38d71ae5a4SJacob Faibussowitsch     PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));
39d71ae5a4SJacob Faibussowitsch     break;
40412e9a14SMatthew G. Knepley   case 3:
419566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd));
429566063dSJacob Faibussowitsch     if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd));
43412e9a14SMatthew G. Knepley     break;
44d71ae5a4SJacob Faibussowitsch   default:
453ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
46412e9a14SMatthew G. Knepley   }
473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48412e9a14SMatthew G. Knepley }
49412e9a14SMatthew G. Knepley 
50d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label)
51d71ae5a4SJacob Faibussowitsch {
52429fa399SMatthew G. Knepley   PetscSF         sf;
53429fa399SMatthew G. Knepley   const PetscInt *rootdegree, *leaves;
54429fa399SMatthew G. Knepley   PetscInt        overlap, Nr = -1, Nl, pStart, fStart, fEnd;
5530560a7bSMatthew G. Knepley 
5630560a7bSMatthew G. Knepley   PetscFunctionBegin;
57429fa399SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &sf));
58429fa399SMatthew G. Knepley   PetscCall(DMPlexGetOverlap(dm, &overlap));
59429fa399SMatthew G. Knepley   if (sf && !overlap) PetscCall(PetscSFGetGraph(sf, &Nr, &Nl, &leaves, NULL));
60429fa399SMatthew G. Knepley   if (Nr > 0) {
61429fa399SMatthew G. Knepley     PetscCall(PetscSFComputeDegreeBegin(sf, &rootdegree));
62429fa399SMatthew G. Knepley     PetscCall(PetscSFComputeDegreeEnd(sf, &rootdegree));
63429fa399SMatthew G. Knepley   } else rootdegree = NULL;
64429fa399SMatthew G. Knepley   PetscCall(DMPlexGetChart(dm, &pStart, NULL));
659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd));
66429fa399SMatthew G. Knepley   for (PetscInt f = fStart; f < fEnd; ++f) {
67429fa399SMatthew G. Knepley     PetscInt supportSize, loc = -1;
6830560a7bSMatthew G. Knepley 
699566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, f, &supportSize));
70e752be1aSMatthew G. Knepley     if (supportSize == 1) {
71429fa399SMatthew G. Knepley       /* Do not mark faces which are shared, meaning
72429fa399SMatthew G. Knepley            they are  present in the pointSF, or
73429fa399SMatthew G. Knepley            they have rootdegree > 0
74429fa399SMatthew G. Knepley          since they presumably have cells on the other side */
75429fa399SMatthew G. Knepley       if (Nr > 0) {
76429fa399SMatthew G. Knepley         PetscCall(PetscFindInt(f, Nl, leaves, &loc));
77429fa399SMatthew G. Knepley         if (rootdegree[f - pStart] || loc >= 0) continue;
78429fa399SMatthew G. Knepley       }
79e752be1aSMatthew G. Knepley       if (val < 0) {
80e752be1aSMatthew G. Knepley         PetscInt *closure = NULL;
81e752be1aSMatthew G. Knepley         PetscInt  clSize, cl, cval;
82e752be1aSMatthew G. Knepley 
839566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
84e752be1aSMatthew G. Knepley         for (cl = 0; cl < clSize * 2; cl += 2) {
859566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, closure[cl], &cval));
86e752be1aSMatthew G. Knepley           if (cval < 0) continue;
879566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(label, f, cval));
88e752be1aSMatthew G. Knepley           break;
89e752be1aSMatthew G. Knepley         }
909566063dSJacob Faibussowitsch         if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1));
919566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure));
92e752be1aSMatthew G. Knepley       } else {
939566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, f, val));
94e752be1aSMatthew G. Knepley       }
95e752be1aSMatthew G. Knepley     }
9630560a7bSMatthew G. Knepley   }
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9830560a7bSMatthew G. Knepley }
9930560a7bSMatthew G. Knepley 
100cd0c2139SMatthew G Knepley /*@
101cd0c2139SMatthew G Knepley   DMPlexMarkBoundaryFaces - Mark all faces on the boundary
102cd0c2139SMatthew G Knepley 
103cd0c2139SMatthew G Knepley   Not Collective
104cd0c2139SMatthew G Knepley 
105d8d19677SJose E. Roman   Input Parameters:
106429fa399SMatthew G. Knepley + dm - The original `DM`
107e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found)
108cd0c2139SMatthew G Knepley 
109cd0c2139SMatthew G Knepley   Output Parameter:
110e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value
111cd0c2139SMatthew G Knepley 
112429fa399SMatthew G. Knepley   Note:
113429fa399SMatthew G. Knepley   This function will use the point `PetscSF` from the input `DM` to exclude points on the partition boundary from being marked, unless the partition overlap is greater than zero. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to NULL, and then reset it to the original object after the call.
114429fa399SMatthew G. Knepley 
115cd0c2139SMatthew G Knepley   Level: developer
116cd0c2139SMatthew G Knepley 
117db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()`
11809f723d9SJed Brown @*/
119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label)
120d71ae5a4SJacob Faibussowitsch {
121827c4036SVaclav Hapla   DMPlexInterpolatedFlag flg;
122cd0c2139SMatthew G Knepley 
123cd0c2139SMatthew G Knepley   PetscFunctionBegin;
124827c4036SVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1259566063dSJacob Faibussowitsch   PetscCall(DMPlexIsInterpolated(dm, &flg));
12608401ef6SPierre Jolivet   PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank");
1279566063dSJacob Faibussowitsch   PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label));
1283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
129cd0c2139SMatthew G Knepley }
130cd0c2139SMatthew G Knepley 
131d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells)
132d71ae5a4SJacob Faibussowitsch {
133b0bf5782SToby Isaac   IS              valueIS;
134ac51f24eSSander Arens   PetscSF         sfPoint;
135b0bf5782SToby Isaac   const PetscInt *values;
136ac51f24eSSander Arens   PetscInt        numValues, v, cStart, cEnd, nroots;
137b0bf5782SToby Isaac 
138b0bf5782SToby Isaac   PetscFunctionBegin;
1399566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
1409566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
1419566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
1429566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
143b0bf5782SToby Isaac   for (v = 0; v < numValues; ++v) {
144b0bf5782SToby Isaac     IS              pointIS;
145b0bf5782SToby Isaac     const PetscInt *points;
146b0bf5782SToby Isaac     PetscInt        numPoints, p;
147b0bf5782SToby Isaac 
1489566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
1499566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
1509566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
151b0bf5782SToby Isaac     for (p = 0; p < numPoints; ++p) {
152b0bf5782SToby Isaac       PetscInt  q       = points[p];
153b0bf5782SToby Isaac       PetscInt *closure = NULL;
154b0bf5782SToby Isaac       PetscInt  closureSize, c;
155b0bf5782SToby Isaac 
156b0bf5782SToby Isaac       if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */
157b0bf5782SToby Isaac         continue;
158b0bf5782SToby Isaac       }
1599566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
16048a46eb9SPierre Jolivet       for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v]));
1619566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure));
162b0bf5782SToby Isaac     }
1639566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
1649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
165b0bf5782SToby Isaac   }
1669566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
1679566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
1689566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
1699566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL));
170ac51f24eSSander Arens   if (nroots >= 0) {
17126279d81SSanderA     DMLabel         lblRoots, lblLeaves;
17226279d81SSanderA     IS              valueIS, pointIS;
17326279d81SSanderA     const PetscInt *values;
17426279d81SSanderA     PetscInt        numValues, v;
17526279d81SSanderA 
17626279d81SSanderA     /* Pull point contributions from remote leaves into local roots */
1779566063dSJacob Faibussowitsch     PetscCall(DMLabelGather(label, sfPoint, &lblLeaves));
1789566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS));
1799566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
1809566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
18126279d81SSanderA     for (v = 0; v < numValues; ++v) {
18226279d81SSanderA       const PetscInt value = values[v];
18326279d81SSanderA 
1849566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS));
1859566063dSJacob Faibussowitsch       PetscCall(DMLabelInsertIS(label, pointIS, value));
1869566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
18726279d81SSanderA     }
1889566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
1899566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
1909566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&lblLeaves));
19126279d81SSanderA     /* Push point contributions from roots into remote leaves */
1929566063dSJacob Faibussowitsch     PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots));
1939566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(lblRoots, &valueIS));
1949566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
1959566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
19626279d81SSanderA     for (v = 0; v < numValues; ++v) {
19726279d81SSanderA       const PetscInt value = values[v];
19826279d81SSanderA 
1999566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS));
2009566063dSJacob Faibussowitsch       PetscCall(DMLabelInsertIS(label, pointIS, value));
2019566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
20226279d81SSanderA     }
2039566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
2049566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
2059566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&lblRoots));
20626279d81SSanderA   }
2073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208b0bf5782SToby Isaac }
209b0bf5782SToby Isaac 
2102be2b188SMatthew G Knepley /*@
2112be2b188SMatthew G Knepley   DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface
2122be2b188SMatthew G Knepley 
2132be2b188SMatthew G Knepley   Input Parameters:
2142be2b188SMatthew G Knepley + dm - The DM
2152be2b188SMatthew G Knepley - label - A DMLabel marking the surface points
2162be2b188SMatthew G Knepley 
2172be2b188SMatthew G Knepley   Output Parameter:
2182be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure
2192be2b188SMatthew G Knepley 
2202be2b188SMatthew G Knepley   Level: developer
2212be2b188SMatthew G Knepley 
222db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()`
2232be2b188SMatthew G Knepley @*/
224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label)
225d71ae5a4SJacob Faibussowitsch {
2262be2b188SMatthew G Knepley   PetscFunctionBegin;
2279566063dSJacob Faibussowitsch   PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE));
2283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2292be2b188SMatthew G Knepley }
2302be2b188SMatthew G Knepley 
2316cf0e42fSMatthew G. Knepley /*@
232a6e0b375SMatthew G. Knepley   DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point
2336cf0e42fSMatthew G. Knepley 
2346cf0e42fSMatthew G. Knepley   Input Parameters:
2356cf0e42fSMatthew G. Knepley + dm - The DM
2366cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points
2376cf0e42fSMatthew G. Knepley 
2386cf0e42fSMatthew G. Knepley   Output Parameter:
2396cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells
2406cf0e42fSMatthew G. Knepley 
2416cf0e42fSMatthew G. Knepley   Level: developer
2426cf0e42fSMatthew G. Knepley 
2436cf0e42fSMatthew G. Knepley   Note: The cells allow FEM boundary conditions to be applied using the cell geometry
2446cf0e42fSMatthew G. Knepley 
245db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
2466cf0e42fSMatthew G. Knepley @*/
247d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label)
248d71ae5a4SJacob Faibussowitsch {
2496cf0e42fSMatthew G. Knepley   IS              valueIS;
2506cf0e42fSMatthew G. Knepley   const PetscInt *values;
2519df54392SMatthew G. Knepley   PetscInt        numValues, v, csStart, csEnd, chStart, chEnd;
2526cf0e42fSMatthew G. Knepley 
2536cf0e42fSMatthew G. Knepley   PetscFunctionBegin;
2549df54392SMatthew G. Knepley   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &csStart, &csEnd));
2559df54392SMatthew G. Knepley   PetscCall(DMPlexGetHeightStratum(dm, 0, &chStart, &chEnd));
2569566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
2579566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
2589566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
2596cf0e42fSMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
2606cf0e42fSMatthew G. Knepley     IS              pointIS;
2616cf0e42fSMatthew G. Knepley     const PetscInt *points;
2626cf0e42fSMatthew G. Knepley     PetscInt        numPoints, p;
2636cf0e42fSMatthew G. Knepley 
2649566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
2659566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
2669566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
2676cf0e42fSMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2689df54392SMatthew G. Knepley       const PetscInt point   = points[p];
2696cf0e42fSMatthew G. Knepley       PetscInt      *closure = NULL;
2709df54392SMatthew G. Knepley       PetscInt       closureSize, cl, h, pStart, pEnd, cStart, cEnd;
2719df54392SMatthew G. Knepley 
2729df54392SMatthew G. Knepley       // If the point is a hybrid, allow hybrid cells
2739df54392SMatthew G. Knepley       PetscCall(DMPlexGetPointHeight(dm, point, &h));
2749df54392SMatthew G. Knepley       PetscCall(DMPlexGetSimplexOrBoxCells(dm, h, &pStart, &pEnd));
2759df54392SMatthew G. Knepley       if (point >= pStart && point < pEnd) {
2769df54392SMatthew G. Knepley         cStart = csStart;
2779df54392SMatthew G. Knepley         cEnd   = csEnd;
2789df54392SMatthew G. Knepley       } else {
2799df54392SMatthew G. Knepley         cStart = chStart;
2809df54392SMatthew G. Knepley         cEnd   = chEnd;
2819df54392SMatthew G. Knepley       }
2826cf0e42fSMatthew G. Knepley 
2839566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
28422eabd52SMatthew G. Knepley       for (cl = closureSize - 1; cl > 0; --cl) {
285a6e0b375SMatthew G. Knepley         const PetscInt cell = closure[cl * 2];
2869371c9d4SSatish Balay         if ((cell >= cStart) && (cell < cEnd)) {
2879371c9d4SSatish Balay           PetscCall(DMLabelSetValue(label, cell, values[v]));
2889371c9d4SSatish Balay           break;
2899371c9d4SSatish Balay         }
29022eabd52SMatthew G. Knepley       }
2919566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure));
2926cf0e42fSMatthew G. Knepley     }
2939566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
2949566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
2956cf0e42fSMatthew G. Knepley   }
2969566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
2979566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2996cf0e42fSMatthew G. Knepley }
3006cf0e42fSMatthew G. Knepley 
301f402d5e4SToby Isaac /*@
302a6e0b375SMatthew G. Knepley   DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face
303a6e0b375SMatthew G. Knepley 
304a6e0b375SMatthew G. Knepley   Input Parameters:
305a6e0b375SMatthew G. Knepley + dm - The DM
306a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points
307a6e0b375SMatthew G. Knepley 
308a6e0b375SMatthew G. Knepley   Output Parameter:
309a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells
310a6e0b375SMatthew G. Knepley 
311a6e0b375SMatthew G. Knepley   Level: developer
312a6e0b375SMatthew G. Knepley 
313a6e0b375SMatthew G. Knepley   Note: The cells allow FEM boundary conditions to be applied using the cell geometry
314a6e0b375SMatthew G. Knepley 
315db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`
316a6e0b375SMatthew G. Knepley @*/
317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label)
318d71ae5a4SJacob Faibussowitsch {
319a6e0b375SMatthew G. Knepley   IS              valueIS;
320a6e0b375SMatthew G. Knepley   const PetscInt *values;
321a6e0b375SMatthew G. Knepley   PetscInt        numValues, v, cStart, cEnd, fStart, fEnd;
322a6e0b375SMatthew G. Knepley 
323a6e0b375SMatthew G. Knepley   PetscFunctionBegin;
3249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
3259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
3269566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
3279566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
3289566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
329a6e0b375SMatthew G. Knepley   for (v = 0; v < numValues; ++v) {
330a6e0b375SMatthew G. Knepley     IS              pointIS;
331a6e0b375SMatthew G. Knepley     const PetscInt *points;
332a6e0b375SMatthew G. Knepley     PetscInt        numPoints, p;
333a6e0b375SMatthew G. Knepley 
3349566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
3359566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
3369566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
337a6e0b375SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
338a6e0b375SMatthew G. Knepley       const PetscInt face    = points[p];
339a6e0b375SMatthew G. Knepley       PetscInt      *closure = NULL;
340a6e0b375SMatthew G. Knepley       PetscInt       closureSize, cl;
341a6e0b375SMatthew G. Knepley 
342a6e0b375SMatthew G. Knepley       if ((face < fStart) || (face >= fEnd)) continue;
3439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
344a6e0b375SMatthew G. Knepley       for (cl = closureSize - 1; cl > 0; --cl) {
345a6e0b375SMatthew G. Knepley         const PetscInt cell = closure[cl * 2];
3469371c9d4SSatish Balay         if ((cell >= cStart) && (cell < cEnd)) {
3479371c9d4SSatish Balay           PetscCall(DMLabelSetValue(label, cell, values[v]));
3489371c9d4SSatish Balay           break;
3499371c9d4SSatish Balay         }
350a6e0b375SMatthew G. Knepley       }
3519566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure));
352a6e0b375SMatthew G. Knepley     }
3539566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
3549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
355a6e0b375SMatthew G. Knepley   }
3569566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
3579566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
3583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
359a6e0b375SMatthew G. Knepley }
360a6e0b375SMatthew G. Knepley 
361a6e0b375SMatthew G. Knepley /*@
362f402d5e4SToby Isaac   DMPlexLabelClearCells - Remove cells from a label
363f402d5e4SToby Isaac 
364f402d5e4SToby Isaac   Input Parameters:
365f402d5e4SToby Isaac + dm - The DM
366f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells
367f402d5e4SToby Isaac 
368f402d5e4SToby Isaac   Output Parameter:
369f402d5e4SToby Isaac . label - A DMLabel without cells
370f402d5e4SToby Isaac 
371f402d5e4SToby Isaac   Level: developer
372f402d5e4SToby Isaac 
373a6e0b375SMatthew G. Knepley   Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells()
374f402d5e4SToby Isaac 
375db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()`
376f402d5e4SToby Isaac @*/
377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label)
378d71ae5a4SJacob Faibussowitsch {
379f402d5e4SToby Isaac   IS              valueIS;
380f402d5e4SToby Isaac   const PetscInt *values;
381485ad865SMatthew G. Knepley   PetscInt        numValues, v, cStart, cEnd;
382f402d5e4SToby Isaac 
383f402d5e4SToby Isaac   PetscFunctionBegin;
3849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd));
3859566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, &numValues));
3869566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
3879566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
388f402d5e4SToby Isaac   for (v = 0; v < numValues; ++v) {
389f402d5e4SToby Isaac     IS              pointIS;
390f402d5e4SToby Isaac     const PetscInt *points;
391f402d5e4SToby Isaac     PetscInt        numPoints, p;
392f402d5e4SToby Isaac 
3939566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints));
3949566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
3959566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pointIS, &points));
396f402d5e4SToby Isaac     for (p = 0; p < numPoints; ++p) {
397f402d5e4SToby Isaac       PetscInt point = points[p];
398f402d5e4SToby Isaac 
39948a46eb9SPierre Jolivet       if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v]));
400f402d5e4SToby Isaac     }
4019566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pointIS, &points));
4029566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
403f402d5e4SToby Isaac   }
4049566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
4059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
4063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
407f402d5e4SToby Isaac }
408f402d5e4SToby Isaac 
40959eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending
41059eef20bSToby Isaac  * index (skipping first, which is (0,0)) */
411d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[])
412d71ae5a4SJacob Faibussowitsch {
4132582d50cSToby Isaac   PetscInt d, off = 0;
4142582d50cSToby Isaac 
4152582d50cSToby Isaac   PetscFunctionBegin;
41659eef20bSToby Isaac   /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */
4170974a383SToby Isaac   for (d = 0; d < depth; d++) {
4182582d50cSToby Isaac     PetscInt firstd     = d;
4190974a383SToby Isaac     PetscInt firstStart = depthShift[2 * d];
4202582d50cSToby Isaac     PetscInt e;
4212582d50cSToby Isaac 
4222582d50cSToby Isaac     for (e = d + 1; e <= depth; e++) {
4232582d50cSToby Isaac       if (depthShift[2 * e] < firstStart) {
4242582d50cSToby Isaac         firstd     = e;
4252582d50cSToby Isaac         firstStart = depthShift[2 * d];
4262582d50cSToby Isaac       }
4272582d50cSToby Isaac     }
4282582d50cSToby Isaac     if (firstd != d) {
4292582d50cSToby Isaac       PetscInt swap[2];
4302582d50cSToby Isaac 
4312582d50cSToby Isaac       e                     = firstd;
4322582d50cSToby Isaac       swap[0]               = depthShift[2 * d];
4332582d50cSToby Isaac       swap[1]               = depthShift[2 * d + 1];
4342582d50cSToby Isaac       depthShift[2 * d]     = depthShift[2 * e];
4352582d50cSToby Isaac       depthShift[2 * d + 1] = depthShift[2 * e + 1];
4362582d50cSToby Isaac       depthShift[2 * e]     = swap[0];
4372582d50cSToby Isaac       depthShift[2 * e + 1] = swap[1];
4382582d50cSToby Isaac     }
4392582d50cSToby Isaac   }
4402582d50cSToby Isaac   /* convert (oldstart, added) to (oldstart, newstart) */
4410974a383SToby Isaac   for (d = 0; d <= depth; d++) {
4422582d50cSToby Isaac     off += depthShift[2 * d + 1];
44359eef20bSToby Isaac     depthShift[2 * d + 1] = depthShift[2 * d] + off;
4442582d50cSToby Isaac   }
4453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4462582d50cSToby Isaac }
4472582d50cSToby Isaac 
4482582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
449d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
450d71ae5a4SJacob Faibussowitsch {
4512582d50cSToby Isaac   PetscInt d;
4522582d50cSToby Isaac   PetscInt newOff = 0;
4532582d50cSToby Isaac 
4542582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
4552582d50cSToby Isaac     if (p < depthShift[2 * d]) return p + newOff;
4562582d50cSToby Isaac     else newOff = depthShift[2 * d + 1] - depthShift[2 * d];
4572582d50cSToby Isaac   }
4580974a383SToby Isaac   return p + newOff;
4592582d50cSToby Isaac }
4602582d50cSToby Isaac 
4612582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */
462d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[])
463d71ae5a4SJacob Faibussowitsch {
4642582d50cSToby Isaac   PetscInt d;
4652582d50cSToby Isaac   PetscInt newOff = 0;
4662582d50cSToby Isaac 
4672582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
4682582d50cSToby Isaac     if (p < depthShift[2 * d + 1]) return p + newOff;
4692582d50cSToby Isaac     else newOff = depthShift[2 * d] - depthShift[2 * d + 1];
4702582d50cSToby Isaac   }
4710974a383SToby Isaac   return p + newOff;
472cd0c2139SMatthew G Knepley }
473cd0c2139SMatthew G Knepley 
474d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew)
475d71ae5a4SJacob Faibussowitsch {
476cd0c2139SMatthew G Knepley   PetscInt depth = 0, d, pStart, pEnd, p;
477fa8e8ae5SToby Isaac   DMLabel  depthLabel;
478cd0c2139SMatthew G Knepley 
479cd0c2139SMatthew G Knepley   PetscFunctionBegin;
4809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
4813ba16761SJacob Faibussowitsch   if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS);
482cd0c2139SMatthew G Knepley   /* Step 1: Expand chart */
4839566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
4840974a383SToby Isaac   pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
4859566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(dmNew, pStart, pEnd));
4869566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew, "depth"));
4879566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel));
4889566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew, "celltype"));
489cd0c2139SMatthew G Knepley   /* Step 2: Set cone and support sizes */
490cd0c2139SMatthew G Knepley   for (d = 0; d <= depth; ++d) {
491fa8e8ae5SToby Isaac     PetscInt pStartNew, pEndNew;
492fa8e8ae5SToby Isaac     IS       pIS;
493fa8e8ae5SToby Isaac 
4949566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd));
495fa8e8ae5SToby Isaac     pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift);
496fa8e8ae5SToby Isaac     pEndNew   = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
4979566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS));
4989566063dSJacob Faibussowitsch     PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS));
4999566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pIS));
500cd0c2139SMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
5012582d50cSToby Isaac       PetscInt       newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
502cd0c2139SMatthew G Knepley       PetscInt       size;
503412e9a14SMatthew G. Knepley       DMPolytopeType ct;
504cd0c2139SMatthew G Knepley 
5059566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, p, &size));
5069566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeSize(dmNew, newp, size));
5079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, p, &size));
5089566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(dmNew, newp, size));
5099566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, p, &ct));
5109566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCellType(dmNew, newp, ct));
511cd0c2139SMatthew G Knepley     }
512cd0c2139SMatthew G Knepley   }
5133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
514cd0c2139SMatthew G Knepley }
515cd0c2139SMatthew G Knepley 
516d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew)
517d71ae5a4SJacob Faibussowitsch {
5182582d50cSToby Isaac   PetscInt *newpoints;
5192582d50cSToby Isaac   PetscInt  depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p;
520cd0c2139SMatthew G Knepley 
521cd0c2139SMatthew G Knepley   PetscFunctionBegin;
5229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
5233ba16761SJacob Faibussowitsch   if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS);
5249566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
5259566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew));
5269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints));
527cd0c2139SMatthew G Knepley   /* Step 5: Set cones and supports */
5289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
529cd0c2139SMatthew G Knepley   for (p = pStart; p < pEnd; ++p) {
530cd0c2139SMatthew G Knepley     const PetscInt *points = NULL, *orientations = NULL;
5312582d50cSToby Isaac     PetscInt        size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift);
532cd0c2139SMatthew G Knepley 
5339566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, p, &size));
5349566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, p, &points));
5359566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeOrientation(dm, p, &orientations));
536ad540459SPierre Jolivet     for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
5379566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(dmNew, newp, newpoints));
5389566063dSJacob Faibussowitsch     PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations));
5399566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, p, &size));
5409566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew));
5419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, p, &points));
542ad540459SPierre Jolivet     for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift);
543dcbb62e8SMatthew G. Knepley     for (i = size; i < sizeNew; ++i) newpoints[i] = 0;
5449566063dSJacob Faibussowitsch     PetscCall(DMPlexSetSupport(dmNew, newp, newpoints));
545cd0c2139SMatthew G Knepley   }
5469566063dSJacob Faibussowitsch   PetscCall(PetscFree(newpoints));
5473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548cd0c2139SMatthew G Knepley }
549cd0c2139SMatthew G Knepley 
550d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew)
551d71ae5a4SJacob Faibussowitsch {
552cd0c2139SMatthew G Knepley   PetscSection coordSection, newCoordSection;
553cd0c2139SMatthew G Knepley   Vec          coordinates, newCoordinates;
554cd0c2139SMatthew G Knepley   PetscScalar *coords, *newCoords;
555f2b8cce1SMatthew G. Knepley   PetscInt     coordSize, sStart, sEnd;
556f2b8cce1SMatthew G. Knepley   PetscInt     dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v;
557f2b8cce1SMatthew G. Knepley   PetscBool    hasCells;
558cd0c2139SMatthew G Knepley 
559cd0c2139SMatthew G Knepley   PetscFunctionBegin;
5609566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dim));
5619566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(dmNew, dim));
5629566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
563cd0c2139SMatthew G Knepley   /* Step 8: Convert coordinates */
5649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
5659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
5669566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew));
5679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew));
5689566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(dm, &coordSection));
5699566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection));
5709566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(newCoordSection, 1));
5719566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim));
5729566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd));
573f2b8cce1SMatthew G. Knepley   hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE;
5749566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew));
575f2b8cce1SMatthew G. Knepley   if (hasCells) {
576f2b8cce1SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
577f2b8cce1SMatthew G. Knepley       PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof;
578f2b8cce1SMatthew G. Knepley 
5799566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, c, &dof));
5809566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof));
5819566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof));
582f2b8cce1SMatthew G. Knepley     }
583f2b8cce1SMatthew G. Knepley   }
584cd0c2139SMatthew G Knepley   for (v = vStartNew; v < vEndNew; ++v) {
5859566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetDof(newCoordSection, v, dim));
5869566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim));
587cd0c2139SMatthew G Knepley   }
5889566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(newCoordSection));
5899566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection));
5909566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize));
5919566063dSJacob Faibussowitsch   PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates));
5929566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates"));
5939566063dSJacob Faibussowitsch   PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE));
5949566063dSJacob Faibussowitsch   PetscCall(VecSetBlockSize(newCoordinates, dim));
5959566063dSJacob Faibussowitsch   PetscCall(VecSetType(newCoordinates, VECSTANDARD));
5969566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates));
5979566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
5989566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordinates, &coords));
5999566063dSJacob Faibussowitsch   PetscCall(VecGetArray(newCoordinates, &newCoords));
600f2b8cce1SMatthew G. Knepley   if (hasCells) {
601f2b8cce1SMatthew G. Knepley     for (c = cStart; c < cEnd; ++c) {
602f2b8cce1SMatthew G. Knepley       PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d;
603f2b8cce1SMatthew G. Knepley 
6049566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, c, &dof));
6059566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, c, &off));
6069566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff));
607f2b8cce1SMatthew G. Knepley       for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d];
608f2b8cce1SMatthew G. Knepley     }
609f2b8cce1SMatthew G. Knepley   }
610cd0c2139SMatthew G Knepley   for (v = vStart; v < vEnd; ++v) {
611cd0c2139SMatthew G Knepley     PetscInt dof, off, noff, d;
612cd0c2139SMatthew G Knepley 
6139566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(coordSection, v, &dof));
6149566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, v, &off));
6159566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff));
616f2b8cce1SMatthew G. Knepley     for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d];
617cd0c2139SMatthew G Knepley   }
6189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordinates, &coords));
6199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(newCoordinates, &newCoords));
6209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&newCoordinates));
6219566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&newCoordSection));
6223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
623cd0c2139SMatthew G Knepley }
624cd0c2139SMatthew G Knepley 
625d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew)
626d71ae5a4SJacob Faibussowitsch {
627cd0c2139SMatthew G Knepley   const PetscSFNode *remotePoints;
628cd0c2139SMatthew G Knepley   PetscSFNode       *gremotePoints;
629cd0c2139SMatthew G Knepley   const PetscInt    *localPoints;
630cd0c2139SMatthew G Knepley   PetscInt          *glocalPoints, *newLocation, *newRemoteLocation;
6310e33faafSMatthew G. Knepley   PetscInt           numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0;
632cd0c2139SMatthew G Knepley 
633cd0c2139SMatthew G Knepley   PetscFunctionBegin;
6349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
6359566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
6369566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints));
6376e21efdcSToby Isaac   totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd;
638cd0c2139SMatthew G Knepley   if (numRoots >= 0) {
6399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation));
6400e33faafSMatthew G. Knepley     for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift);
6419566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
6429566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE));
6439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeaves, &glocalPoints));
6449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeaves, &gremotePoints));
645cd0c2139SMatthew G Knepley     for (l = 0; l < numLeaves; ++l) {
6462582d50cSToby Isaac       glocalPoints[l]        = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift);
647cd0c2139SMatthew G Knepley       gremotePoints[l].rank  = remotePoints[l].rank;
648cd0c2139SMatthew G Knepley       gremotePoints[l].index = newRemoteLocation[localPoints[l]];
649cd0c2139SMatthew G Knepley     }
6509566063dSJacob Faibussowitsch     PetscCall(PetscFree2(newLocation, newRemoteLocation));
6519566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER));
6520e33faafSMatthew G. Knepley   }
6533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6540e33faafSMatthew G. Knepley }
6550e33faafSMatthew G. Knepley 
656d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew)
657d71ae5a4SJacob Faibussowitsch {
6580e33faafSMatthew G. Knepley   PetscSF   sfPoint, sfPointNew;
6590e33faafSMatthew G. Knepley   PetscBool useNatural;
6600e33faafSMatthew G. Knepley 
6610e33faafSMatthew G. Knepley   PetscFunctionBegin;
6620e33faafSMatthew G. Knepley   /* Step 9: Convert pointSF */
6639566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
6649566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dmNew, &sfPointNew));
6659566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew));
6660e33faafSMatthew G. Knepley   /* Step 9b: Convert naturalSF */
6679566063dSJacob Faibussowitsch   PetscCall(DMGetUseNatural(dm, &useNatural));
6680e33faafSMatthew G. Knepley   if (useNatural) {
6690e33faafSMatthew G. Knepley     PetscSF sfNat, sfNatNew;
6700e33faafSMatthew G. Knepley 
6719566063dSJacob Faibussowitsch     PetscCall(DMSetUseNatural(dmNew, useNatural));
6729566063dSJacob Faibussowitsch     PetscCall(DMGetNaturalSF(dm, &sfNat));
6739566063dSJacob Faibussowitsch     PetscCall(DMGetNaturalSF(dmNew, &sfNatNew));
6749566063dSJacob Faibussowitsch     PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew));
675cd0c2139SMatthew G Knepley   }
6763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
677cd0c2139SMatthew G Knepley }
678cd0c2139SMatthew G Knepley 
679d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew)
680d71ae5a4SJacob Faibussowitsch {
681d56405f8SMatthew G. Knepley   PetscInt depth = 0, numLabels, l;
682cd0c2139SMatthew G Knepley 
683cd0c2139SMatthew G Knepley   PetscFunctionBegin;
6849566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
685cd0c2139SMatthew G Knepley   /* Step 10: Convert labels */
6869566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &numLabels));
687cd0c2139SMatthew G Knepley   for (l = 0; l < numLabels; ++l) {
688cd0c2139SMatthew G Knepley     DMLabel         label, newlabel;
689cd0c2139SMatthew G Knepley     const char     *lname;
690fa8e8ae5SToby Isaac     PetscBool       isDepth, isDim;
691cd0c2139SMatthew G Knepley     IS              valueIS;
692cd0c2139SMatthew G Knepley     const PetscInt *values;
693cd0c2139SMatthew G Knepley     PetscInt        numValues, val;
694cd0c2139SMatthew G Knepley 
6959566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &lname));
6969566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "depth", &isDepth));
697cd0c2139SMatthew G Knepley     if (isDepth) continue;
6989566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "dim", &isDim));
699fa8e8ae5SToby Isaac     if (isDim) continue;
7009566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dmNew, lname));
7019566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, lname, &label));
7029566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmNew, lname, &newlabel));
7039566063dSJacob Faibussowitsch     PetscCall(DMLabelGetDefaultValue(label, &val));
7049566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(newlabel, val));
7059566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
7069566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numValues));
7079566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
708cd0c2139SMatthew G Knepley     for (val = 0; val < numValues; ++val) {
709cd0c2139SMatthew G Knepley       IS              pointIS;
710cd0c2139SMatthew G Knepley       const PetscInt *points;
711cd0c2139SMatthew G Knepley       PetscInt        numPoints, p;
712cd0c2139SMatthew G Knepley 
7139566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS));
7149566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &numPoints));
7159566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
716cd0c2139SMatthew G Knepley       for (p = 0; p < numPoints; ++p) {
7172582d50cSToby Isaac         const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift);
718cd0c2139SMatthew G Knepley 
7199566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(newlabel, newpoint, values[val]));
720cd0c2139SMatthew G Knepley       }
7219566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
7229566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
723cd0c2139SMatthew G Knepley     }
7249566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
7259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
726cd0c2139SMatthew G Knepley   }
7273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
728d56405f8SMatthew G. Knepley }
729d56405f8SMatthew G. Knepley 
730d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew)
731d71ae5a4SJacob Faibussowitsch {
732d56405f8SMatthew G. Knepley   PetscSF            sfPoint;
733d56405f8SMatthew G. Knepley   DMLabel            vtkLabel, ghostLabel = NULL;
734d56405f8SMatthew G. Knepley   const PetscSFNode *leafRemote;
735d56405f8SMatthew G. Knepley   const PetscInt    *leafLocal;
736d56405f8SMatthew G. Knepley   PetscInt           cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l;
737d56405f8SMatthew G. Knepley   PetscMPIInt        rank;
738d56405f8SMatthew G. Knepley 
739d56405f8SMatthew G. Knepley   PetscFunctionBegin;
740cd0c2139SMatthew G Knepley   /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */
7419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
7429566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sfPoint));
7439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight));
7449566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd));
7459566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote));
7469566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(dmNew, "vtk"));
7479566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel));
748d56405f8SMatthew G. Knepley   if (createGhostLabel) {
7499566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dmNew, "ghost"));
7509566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel));
751d56405f8SMatthew G. Knepley   }
752cd0c2139SMatthew G Knepley   for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) {
75348a46eb9SPierre Jolivet     for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1));
754cd0c2139SMatthew G Knepley     if (leafLocal[l] >= cEnd) break;
755cd0c2139SMatthew G Knepley     if (leafRemote[l].rank == rank) {
7569566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(vtkLabel, c, 1));
7571baa6e33SBarry Smith     } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2));
758cd0c2139SMatthew G Knepley   }
75948a46eb9SPierre Jolivet   for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1));
760d56405f8SMatthew G. Knepley   if (ghostLabel) {
7619566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd));
762cd0c2139SMatthew G Knepley     for (f = fStart; f < fEnd; ++f) {
763cd0c2139SMatthew G Knepley       PetscInt numCells;
764cd0c2139SMatthew G Knepley 
7659566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells));
766cd0c2139SMatthew G Knepley       if (numCells < 2) {
7679566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(ghostLabel, f, 1));
768cd0c2139SMatthew G Knepley       } else {
769cd0c2139SMatthew G Knepley         const PetscInt *cells = NULL;
770cd0c2139SMatthew G Knepley         PetscInt        vA, vB;
771cd0c2139SMatthew G Knepley 
7729566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dmNew, f, &cells));
7739566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA));
7749566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB));
7759566063dSJacob Faibussowitsch         if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1));
776cd0c2139SMatthew G Knepley       }
777cd0c2139SMatthew G Knepley     }
778d56405f8SMatthew G. Knepley   }
7793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
780cd0c2139SMatthew G Knepley }
781cd0c2139SMatthew G Knepley 
782d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew)
783d71ae5a4SJacob Faibussowitsch {
784ca04dac2SToby Isaac   DM           refTree;
785ca04dac2SToby Isaac   PetscSection pSec;
786ca04dac2SToby Isaac   PetscInt    *parents, *childIDs;
787ca04dac2SToby Isaac 
788ca04dac2SToby Isaac   PetscFunctionBegin;
7899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetReferenceTree(dm, &refTree));
7909566063dSJacob Faibussowitsch   PetscCall(DMPlexSetReferenceTree(dmNew, refTree));
7919566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL));
792ca04dac2SToby Isaac   if (pSec) {
7932582d50cSToby Isaac     PetscInt     p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth;
794fb4630b5SToby Isaac     PetscInt    *childIDsShifted;
795ca04dac2SToby Isaac     PetscSection pSecShifted;
796ca04dac2SToby Isaac 
7979566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd));
7989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(dm, &depth));
7992582d50cSToby Isaac     pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift);
8002582d50cSToby Isaac     pEndShifted   = DMPlexShiftPoint_Internal(pEnd, depth, depthShift);
8019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted));
8029566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted));
8039566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted));
804ca04dac2SToby Isaac     for (p = pStartShifted; p < pEndShifted; p++) {
805fb4630b5SToby Isaac       /* start off assuming no children */
8069566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(pSecShifted, p, 0));
807fb4630b5SToby Isaac     }
808fb4630b5SToby Isaac     for (p = pStart; p < pEnd; p++) {
809fb4630b5SToby Isaac       PetscInt dof;
810fb4630b5SToby Isaac       PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift);
811ca04dac2SToby Isaac 
8129566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(pSec, p, &dof));
8139566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof));
814ca04dac2SToby Isaac     }
8159566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(pSecShifted));
816fb4630b5SToby Isaac     for (p = pStart; p < pEnd; p++) {
817fb4630b5SToby Isaac       PetscInt dof;
818fb4630b5SToby Isaac       PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift);
819fb4630b5SToby Isaac 
8209566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(pSec, p, &dof));
821fb4630b5SToby Isaac       if (dof) {
822fb4630b5SToby Isaac         PetscInt off, offNew;
823fb4630b5SToby Isaac 
8249566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(pSec, p, &off));
8259566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew));
826fb4630b5SToby Isaac         parentsShifted[offNew]  = DMPlexShiftPoint_Internal(parents[off], depth, depthShift);
827fb4630b5SToby Isaac         childIDsShifted[offNew] = childIDs[off];
828fb4630b5SToby Isaac       }
829fb4630b5SToby Isaac     }
8309566063dSJacob Faibussowitsch     PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted));
8319566063dSJacob Faibussowitsch     PetscCall(PetscFree2(parentsShifted, childIDsShifted));
8329566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&pSecShifted));
833ca04dac2SToby Isaac   }
8343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
835ca04dac2SToby Isaac }
836ca04dac2SToby Isaac 
837d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm)
838d71ae5a4SJacob Faibussowitsch {
839da97024aSMatthew G. Knepley   PetscSF          sf;
840cd0c2139SMatthew G Knepley   IS               valueIS;
841da97024aSMatthew G. Knepley   const PetscInt  *values, *leaves;
842cd0c2139SMatthew G Knepley   PetscInt        *depthShift;
8432582d50cSToby Isaac   PetscInt         d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c;
8444fb89dddSMatthew G. Knepley   const PetscReal *maxCell, *Lstart, *L;
845cd0c2139SMatthew G Knepley 
846cd0c2139SMatthew G Knepley   PetscFunctionBegin;
8479566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
8489566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
849da97024aSMatthew G. Knepley   nleaves = PetscMax(0, nleaves);
8509566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
851cd0c2139SMatthew G Knepley   /* Count ghost cells */
8529566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValueIS(label, &valueIS));
8539566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(valueIS, &numFS));
8549566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(valueIS, &values));
8554a6cfa73SMatthew G. Knepley   Ng = 0;
856cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
85746c796b9SMatthew G. Knepley     IS              faceIS;
85846c796b9SMatthew G. Knepley     const PetscInt *faces;
85946c796b9SMatthew G. Knepley     PetscInt        numFaces, f, numBdFaces = 0;
860cd0c2139SMatthew G Knepley 
8619566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
8629566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
8639566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
86446c796b9SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
865ca04dac2SToby Isaac       PetscInt numChildren;
866ca04dac2SToby Isaac 
8679566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
8689566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
869ca04dac2SToby Isaac       /* non-local and ancestors points don't get to register ghosts */
870ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
87146c796b9SMatthew G. Knepley       if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces;
87246c796b9SMatthew G. Knepley     }
8734a6cfa73SMatthew G. Knepley     Ng += numBdFaces;
8749566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
8759566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
876cd0c2139SMatthew G Knepley   }
8779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
8789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift));
8792582d50cSToby Isaac   for (d = 0; d <= depth; d++) {
88059eef20bSToby Isaac     PetscInt dEnd;
8812582d50cSToby Isaac 
8829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd));
88359eef20bSToby Isaac     depthShift[2 * d]     = dEnd;
8842582d50cSToby Isaac     depthShift[2 * d + 1] = 0;
8852582d50cSToby Isaac   }
8862582d50cSToby Isaac   if (depth >= 0) depthShift[2 * depth + 1] = Ng;
8879566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift));
8889566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm));
889cd0c2139SMatthew G Knepley   /* Step 3: Set cone/support sizes for new points */
8909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd));
89148a46eb9SPierre Jolivet   for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1));
892cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
893cd0c2139SMatthew G Knepley     IS              faceIS;
894cd0c2139SMatthew G Knepley     const PetscInt *faces;
895cd0c2139SMatthew G Knepley     PetscInt        numFaces, f;
896cd0c2139SMatthew G Knepley 
8979566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
8989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
8999566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
900cd0c2139SMatthew G Knepley     for (f = 0; f < numFaces; ++f) {
901ca04dac2SToby Isaac       PetscInt size, numChildren;
902cd0c2139SMatthew G Knepley 
9039566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
9049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
905ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
90646c796b9SMatthew G. Knepley       if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
9079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, faces[f], &size));
90863a3b9bcSJacob Faibussowitsch       PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size);
9099566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2));
910cd0c2139SMatthew G Knepley     }
9119566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9129566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
913cd0c2139SMatthew G Knepley   }
914cd0c2139SMatthew G Knepley   /* Step 4: Setup ghosted DM */
9159566063dSJacob Faibussowitsch   PetscCall(DMSetUp(gdm));
9169566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm));
917cd0c2139SMatthew G Knepley   /* Step 6: Set cones and supports for new points */
918cd0c2139SMatthew G Knepley   ghostCell = cEnd;
919cd0c2139SMatthew G Knepley   for (fs = 0; fs < numFS; ++fs) {
920cd0c2139SMatthew G Knepley     IS              faceIS;
921cd0c2139SMatthew G Knepley     const PetscInt *faces;
922cd0c2139SMatthew G Knepley     PetscInt        numFaces, f;
923cd0c2139SMatthew G Knepley 
9249566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS));
9259566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(faceIS, &numFaces));
9269566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(faceIS, &faces));
92746c796b9SMatthew G. Knepley     for (f = 0; f < numFaces; ++f) {
928ca04dac2SToby Isaac       PetscInt newFace = faces[f] + Ng, numChildren;
929cd0c2139SMatthew G Knepley 
9309566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc));
9319566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL));
932ca04dac2SToby Isaac       if (loc >= 0 || numChildren) continue;
93346c796b9SMatthew G. Knepley       if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue;
9349566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace));
9359566063dSJacob Faibussowitsch       PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell));
93646c796b9SMatthew G. Knepley       ++ghostCell;
937cd0c2139SMatthew G Knepley     }
9389566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(faceIS, &faces));
9399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&faceIS));
940cd0c2139SMatthew G Knepley   }
9419566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(valueIS, &values));
9429566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&valueIS));
9439566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm));
9449566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm));
9459566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm));
9469566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm));
9479566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm));
9489566063dSJacob Faibussowitsch   PetscCall(PetscFree(depthShift));
94948a46eb9SPierre Jolivet   for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST));
950966c7b3fSMatthew G. Knepley   /* Step 7: Periodicity */
9514fb89dddSMatthew G. Knepley   PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
9524fb89dddSMatthew G. Knepley   PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L));
9534a6cfa73SMatthew G. Knepley   if (numGhostCells) *numGhostCells = Ng;
9543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
955cd0c2139SMatthew G Knepley }
956cd0c2139SMatthew G Knepley 
957cd0c2139SMatthew G Knepley /*@C
958cd0c2139SMatthew G Knepley   DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face
959cd0c2139SMatthew G Knepley 
960cd0c2139SMatthew G Knepley   Collective on dm
961cd0c2139SMatthew G Knepley 
962cd0c2139SMatthew G Knepley   Input Parameters:
963cd0c2139SMatthew G Knepley + dm - The original DM
964cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL
965cd0c2139SMatthew G Knepley 
966cd0c2139SMatthew G Knepley   Output Parameters:
967cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM
968cd0c2139SMatthew G Knepley - dmGhosted - The new DM
969cd0c2139SMatthew G Knepley 
970cd0c2139SMatthew G Knepley   Note: If no label exists of that name, one will be created marking all boundary faces
971cd0c2139SMatthew G Knepley 
972cd0c2139SMatthew G Knepley   Level: developer
973cd0c2139SMatthew G Knepley 
974db781477SPatrick Sanan .seealso: `DMCreate()`
97531266bc0SMatthew G. Knepley @*/
976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted)
977d71ae5a4SJacob Faibussowitsch {
978cd0c2139SMatthew G Knepley   DM          gdm;
979cd0c2139SMatthew G Knepley   DMLabel     label;
980cd0c2139SMatthew G Knepley   const char *name = labelName ? labelName : "Face Sets";
981412e9a14SMatthew G. Knepley   PetscInt    dim, Ng = 0;
982b0441da4SMatthew G. Knepley   PetscBool   useCone, useClosure;
983cd0c2139SMatthew G Knepley 
984cd0c2139SMatthew G Knepley   PetscFunctionBegin;
985cd0c2139SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
986dadcf809SJacob Faibussowitsch   if (numGhostCells) PetscValidIntPointer(numGhostCells, 3);
987cd0c2139SMatthew G Knepley   PetscValidPointer(dmGhosted, 4);
9889566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm));
9899566063dSJacob Faibussowitsch   PetscCall(DMSetType(gdm, DMPLEX));
9909566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
9919566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(gdm, dim));
9929566063dSJacob Faibussowitsch   PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure));
9939566063dSJacob Faibussowitsch   PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure));
9949566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
995cd0c2139SMatthew G Knepley   if (!label) {
996cd0c2139SMatthew G Knepley     /* Get label for boundary faces */
9979566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
9989566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
9999566063dSJacob Faibussowitsch     PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label));
1000cd0c2139SMatthew G Knepley   }
10019566063dSJacob Faibussowitsch   PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm));
10029566063dSJacob Faibussowitsch   PetscCall(DMCopyDisc(dm, gdm));
10035de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm));
1004cad26855SMatthew G. Knepley   gdm->setfromoptionscalled = dm->setfromoptionscalled;
1005d80ece95SMatthew G. Knepley   if (numGhostCells) *numGhostCells = Ng;
1006cd0c2139SMatthew G Knepley   *dmGhosted = gdm;
10073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1008cd0c2139SMatthew G Knepley }
1009cd0c2139SMatthew G Knepley 
1010d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue)
1011d71ae5a4SJacob Faibussowitsch {
1012accc9626SMatthew G. Knepley   PetscInt dim, d, shift = 100, *pStart, *pEnd;
1013accc9626SMatthew G. Knepley 
1014accc9626SMatthew G. Knepley   PetscFunctionBegin;
1015accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
1016accc9626SMatthew G. Knepley   PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd));
101748a46eb9SPierre Jolivet   for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
1018accc9626SMatthew G. Knepley   while (!DMPlexPointQueueEmpty(queue)) {
1019accc9626SMatthew G. Knepley     PetscInt  cell    = -1;
1020accc9626SMatthew G. Knepley     PetscInt *closure = NULL;
1021accc9626SMatthew G. Knepley     PetscInt  closureSize, cl, cval;
1022accc9626SMatthew G. Knepley 
1023accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueDequeue(queue, &cell));
1024accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, cell, &cval));
1025accc9626SMatthew G. Knepley     PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1026accc9626SMatthew G. Knepley     /* Mark points in the cell closure that touch the fault */
1027accc9626SMatthew G. Knepley     for (d = 0; d < dim; ++d) {
1028accc9626SMatthew G. Knepley       for (cl = 0; cl < closureSize * 2; cl += 2) {
1029accc9626SMatthew G. Knepley         const PetscInt clp = closure[cl];
1030accc9626SMatthew G. Knepley         PetscInt       clval;
1031accc9626SMatthew G. Knepley 
1032accc9626SMatthew G. Knepley         if ((clp < pStart[d]) || (clp >= pEnd[d])) continue;
1033accc9626SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, clp, &clval));
1034accc9626SMatthew G. Knepley         if (clval == -1) {
1035accc9626SMatthew G. Knepley           const PetscInt *cone;
1036accc9626SMatthew G. Knepley           PetscInt        coneSize, c;
1037accc9626SMatthew G. Knepley 
1038accc9626SMatthew G. Knepley           /* If a cone point touches the fault, then this point touches the fault */
1039accc9626SMatthew G. Knepley           PetscCall(DMPlexGetCone(dm, clp, &cone));
1040accc9626SMatthew G. Knepley           PetscCall(DMPlexGetConeSize(dm, clp, &coneSize));
1041accc9626SMatthew G. Knepley           for (c = 0; c < coneSize; ++c) {
1042accc9626SMatthew G. Knepley             PetscInt cpval;
1043accc9626SMatthew G. Knepley 
1044accc9626SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, cone[c], &cpval));
1045accc9626SMatthew G. Knepley             if (cpval != -1) {
1046accc9626SMatthew G. Knepley               PetscInt dep;
1047accc9626SMatthew G. Knepley 
1048accc9626SMatthew G. Knepley               PetscCall(DMPlexGetPointDepth(dm, clp, &dep));
1049accc9626SMatthew G. Knepley               clval = cval < 0 ? -(shift + dep) : shift + dep;
1050accc9626SMatthew G. Knepley               PetscCall(DMLabelSetValue(label, clp, clval));
1051accc9626SMatthew G. Knepley               break;
1052accc9626SMatthew G. Knepley             }
1053accc9626SMatthew G. Knepley           }
1054accc9626SMatthew G. Knepley         }
1055accc9626SMatthew G. Knepley         /* Mark neighbor cells through marked faces (these cells must also touch the fault) */
1056accc9626SMatthew G. Knepley         if (d == dim - 1 && clval != -1) {
1057accc9626SMatthew G. Knepley           const PetscInt *support;
1058accc9626SMatthew G. Knepley           PetscInt        supportSize, s, nval;
1059accc9626SMatthew G. Knepley 
1060accc9626SMatthew G. Knepley           PetscCall(DMPlexGetSupport(dm, clp, &support));
1061accc9626SMatthew G. Knepley           PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize));
1062accc9626SMatthew G. Knepley           for (s = 0; s < supportSize; ++s) {
1063accc9626SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, support[s], &nval));
1064accc9626SMatthew G. Knepley             if (nval == -1) {
1065accc9626SMatthew G. Knepley               PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1));
1066accc9626SMatthew G. Knepley               PetscCall(DMPlexPointQueueEnqueue(queue, support[s]));
1067accc9626SMatthew G. Knepley             }
1068accc9626SMatthew G. Knepley           }
1069accc9626SMatthew G. Knepley         }
1070accc9626SMatthew G. Knepley       }
1071accc9626SMatthew G. Knepley     }
1072accc9626SMatthew G. Knepley     PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
1073accc9626SMatthew G. Knepley   }
1074accc9626SMatthew G. Knepley   PetscCall(PetscFree2(pStart, pEnd));
10753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1076accc9626SMatthew G. Knepley }
1077accc9626SMatthew G. Knepley 
1078accc9626SMatthew G. Knepley typedef struct {
1079accc9626SMatthew G. Knepley   DM               dm;
1080accc9626SMatthew G. Knepley   DMPlexPointQueue queue;
1081accc9626SMatthew G. Knepley } PointDivision;
1082accc9626SMatthew G. Knepley 
1083d71ae5a4SJacob Faibussowitsch static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx)
1084d71ae5a4SJacob Faibussowitsch {
1085accc9626SMatthew G. Knepley   PointDivision  *div  = (PointDivision *)ctx;
1086accc9626SMatthew G. Knepley   PetscInt        cval = val < 0 ? val - 1 : val + 1;
1087accc9626SMatthew G. Knepley   const PetscInt *support;
1088accc9626SMatthew G. Knepley   PetscInt        supportSize, s;
1089accc9626SMatthew G. Knepley 
1090accc9626SMatthew G. Knepley   PetscFunctionBegin;
1091accc9626SMatthew G. Knepley   PetscCall(DMPlexGetSupport(div->dm, p, &support));
1092accc9626SMatthew G. Knepley   PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize));
1093accc9626SMatthew G. Knepley   for (s = 0; s < supportSize; ++s) {
1094accc9626SMatthew G. Knepley     PetscCall(DMLabelSetValue(label, support[s], cval));
1095accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s]));
1096accc9626SMatthew G. Knepley   }
10973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1098accc9626SMatthew G. Knepley }
1099accc9626SMatthew G. Knepley 
1100accc9626SMatthew G. Knepley /* Mark cells by label propagation */
1101d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel)
1102d71ae5a4SJacob Faibussowitsch {
1103accc9626SMatthew G. Knepley   DMPlexPointQueue queue = NULL;
1104accc9626SMatthew G. Knepley   PointDivision    div;
1105accc9626SMatthew G. Knepley   PetscSF          pointSF;
1106accc9626SMatthew G. Knepley   IS               pointIS;
1107accc9626SMatthew G. Knepley   const PetscInt  *points;
1108accc9626SMatthew G. Knepley   PetscBool        empty;
1109accc9626SMatthew G. Knepley   PetscInt         dim, shift = 100, n, i;
1110accc9626SMatthew G. Knepley 
1111accc9626SMatthew G. Knepley   PetscFunctionBegin;
1112accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
1113accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueCreate(1024, &queue));
1114accc9626SMatthew G. Knepley   div.dm    = dm;
1115accc9626SMatthew G. Knepley   div.queue = queue;
1116accc9626SMatthew G. Knepley   /* Enqueue cells on fault */
1117accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS));
1118accc9626SMatthew G. Knepley   if (pointIS) {
1119accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(pointIS, &n));
1120accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(pointIS, &points));
112148a46eb9SPierre Jolivet     for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));
1122accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(pointIS, &points));
1123accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&pointIS));
1124accc9626SMatthew G. Knepley   }
1125accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS));
1126accc9626SMatthew G. Knepley   if (pointIS) {
1127accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(pointIS, &n));
1128accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(pointIS, &points));
112948a46eb9SPierre Jolivet     for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));
1130accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(pointIS, &points));
1131accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&pointIS));
1132accc9626SMatthew G. Knepley   }
1133accc9626SMatthew G. Knepley 
1134accc9626SMatthew G. Knepley   PetscCall(DMGetPointSF(dm, &pointSF));
1135accc9626SMatthew G. Knepley   PetscCall(DMLabelPropagateBegin(faultLabel, pointSF));
1136accc9626SMatthew G. Knepley   /* While edge queue is not empty: */
1137accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty));
1138accc9626SMatthew G. Knepley   while (!empty) {
1139accc9626SMatthew G. Knepley     PetscCall(DivideCells_Private(dm, faultLabel, queue));
1140accc9626SMatthew G. Knepley     PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div));
1141accc9626SMatthew G. Knepley     PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty));
1142accc9626SMatthew G. Knepley   }
1143accc9626SMatthew G. Knepley   PetscCall(DMLabelPropagateEnd(faultLabel, pointSF));
1144accc9626SMatthew G. Knepley   PetscCall(DMPlexPointQueueDestroy(&queue));
11453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1146accc9626SMatthew G. Knepley }
1147accc9626SMatthew G. Knepley 
1148607ab7a9SMatthew G. Knepley /*
1149faedd622SMatthew G. Knepley   We are adding three kinds of points here:
1150607ab7a9SMatthew G. Knepley     Replicated:     Copies of points which exist in the mesh, such as vertices identified across a fault
1151faedd622SMatthew G. Knepley     Non-replicated: Points which exist on the fault, but are not replicated
1152b6dfa339SMatthew G. Knepley     Ghost:          These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate
1153607ab7a9SMatthew G. Knepley     Hybrid:         Entirely new points, such as cohesive cells
1154a6ae58d1SMatthew G. Knepley 
1155a6ae58d1SMatthew G. Knepley   When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at
1156a6ae58d1SMatthew G. Knepley   each depth so that the new split/hybrid points can be inserted as a block.
1157607ab7a9SMatthew G. Knepley */
1158d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm)
1159d71ae5a4SJacob Faibussowitsch {
1160cd0c2139SMatthew G Knepley   MPI_Comm         comm;
1161607ab7a9SMatthew G. Knepley   IS               valueIS;
1162607ab7a9SMatthew G. Knepley   PetscInt         numSP = 0; /* The number of depths for which we have replicated points */
1163607ab7a9SMatthew G. Knepley   const PetscInt  *values;    /* List of depths for which we have replicated points */
116418c5995bSMatthew G. Knepley   IS              *splitIS;
116518c5995bSMatthew G. Knepley   IS              *unsplitIS;
1166b6dfa339SMatthew G. Knepley   IS               ghostIS;
1167607ab7a9SMatthew G. Knepley   PetscInt        *numSplitPoints;     /* The number of replicated points at each depth */
116818c5995bSMatthew G. Knepley   PetscInt        *numUnsplitPoints;   /* The number of non-replicated points at each depth which still give rise to hybrid points */
116936dbac82SMatthew G. Knepley   PetscInt        *numHybridPoints;    /* The number of new hybrid points at each depth */
117036dbac82SMatthew G. Knepley   PetscInt        *numHybridPointsOld; /* The number of existing hybrid points at each depth */
1171b6dfa339SMatthew G. Knepley   PetscInt         numGhostPoints;     /* The number of unowned, shared fault faces */
1172607ab7a9SMatthew G. Knepley   const PetscInt **splitPoints;        /* Replicated points for each depth */
117318c5995bSMatthew G. Knepley   const PetscInt **unsplitPoints;      /* Non-replicated points for each depth */
1174b6dfa339SMatthew G. Knepley   const PetscInt  *ghostPoints;        /* Ghost fault faces */
1175cd0c2139SMatthew G Knepley   PetscSection     coordSection;
1176cd0c2139SMatthew G Knepley   Vec              coordinates;
1177cd0c2139SMatthew G Knepley   PetscScalar     *coords;
1178a6ae58d1SMatthew G. Knepley   PetscInt        *depthMax;   /* The first hybrid point at each depth in the original mesh */
1179a6ae58d1SMatthew G. Knepley   PetscInt        *depthEnd;   /* The point limit at each depth in the original mesh */
1180607ab7a9SMatthew G. Knepley   PetscInt        *depthShift; /* Number of replicated+hybrid points at each depth */
1181607ab7a9SMatthew G. Knepley   PetscInt        *pMaxNew;    /* The first replicated point at each depth in the new mesh, hybrids come after this */
1182607ab7a9SMatthew G. Knepley   PetscInt        *coneNew, *coneONew, *supportNew;
118318c5995bSMatthew G. Knepley   PetscInt         shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v;
1184cd0c2139SMatthew G Knepley 
1185cd0c2139SMatthew G Knepley   PetscFunctionBegin;
11869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
11879566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
11889566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
11899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
1190412e9a14SMatthew G. Knepley   /* We do not want this label automatically computed, instead we compute it here */
11919566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(sdm, "celltype"));
1192cd0c2139SMatthew G Knepley   /* Count split points and add cohesive cells */
11939566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize));
11949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld));
11959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints));
1196607ab7a9SMatthew G. Knepley   for (d = 0; d <= depth; ++d) {
11979566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]));
11989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL));
1199a6ae58d1SMatthew G. Knepley     depthEnd[d]           = pMaxNew[d];
1200a6ae58d1SMatthew G. Knepley     depthMax[d]           = depthMax[d] < 0 ? depthEnd[d] : depthMax[d];
1201607ab7a9SMatthew G. Knepley     numSplitPoints[d]     = 0;
120218c5995bSMatthew G. Knepley     numUnsplitPoints[d]   = 0;
1203607ab7a9SMatthew G. Knepley     numHybridPoints[d]    = 0;
1204a6ae58d1SMatthew G. Knepley     numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d];
1205607ab7a9SMatthew G. Knepley     splitPoints[d]        = NULL;
120618c5995bSMatthew G. Knepley     unsplitPoints[d]      = NULL;
120718c5995bSMatthew G. Knepley     splitIS[d]            = NULL;
120818c5995bSMatthew G. Knepley     unsplitIS[d]          = NULL;
120959eef20bSToby Isaac     /* we are shifting the existing hybrid points with the stratum behind them, so
121059eef20bSToby Isaac      * the split comes at the end of the normal points, i.e., at depthMax[d] */
121159eef20bSToby Isaac     depthShift[2 * d]     = depthMax[d];
121259eef20bSToby Isaac     depthShift[2 * d + 1] = 0;
1213607ab7a9SMatthew G. Knepley   }
1214b6dfa339SMatthew G. Knepley   numGhostPoints = 0;
1215b6dfa339SMatthew G. Knepley   ghostPoints    = NULL;
1216cd0c2139SMatthew G Knepley   if (label) {
12179566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
12189566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &numSP));
12199566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
1220cd0c2139SMatthew G Knepley   }
1221cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1222cd0c2139SMatthew G Knepley     const PetscInt dep = values[sp];
1223cd0c2139SMatthew G Knepley 
1224cd0c2139SMatthew G Knepley     if ((dep < 0) || (dep > depth)) continue;
12259566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep]));
122618c5995bSMatthew G. Knepley     if (splitIS[dep]) {
12279566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]));
12289566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep]));
122918c5995bSMatthew G. Knepley     }
12309566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep]));
123118c5995bSMatthew G. Knepley     if (unsplitIS[dep]) {
12329566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]));
12339566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]));
1234cd0c2139SMatthew G Knepley     }
1235cd0c2139SMatthew G Knepley   }
1236b6dfa339SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS));
1237b6dfa339SMatthew G. Knepley   if (ghostIS) {
1238b6dfa339SMatthew G. Knepley     PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints));
1239b6dfa339SMatthew G. Knepley     PetscCall(ISGetIndices(ghostIS, &ghostPoints));
1240b6dfa339SMatthew G. Knepley   }
1241607ab7a9SMatthew G. Knepley   /* Calculate number of hybrid points */
124218c5995bSMatthew G. Knepley   for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex   */
12432582d50cSToby Isaac   for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d];
12449566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift));
124559eef20bSToby Isaac   /* the end of the points in this stratum that come before the new points:
124659eef20bSToby Isaac    * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly
124759eef20bSToby Isaac    * added points */
12482582d50cSToby Isaac   for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]);
12499566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm));
1250cd0c2139SMatthew G Knepley   /* Step 3: Set cone/support sizes for new points */
1251cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1252cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
1253cd0c2139SMatthew G Knepley       const PetscInt  oldp   = splitPoints[dep][p];
12542582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
12554c367dbcSMatthew G. Knepley       const PetscInt  splitp = p + pMaxNew[dep];
1256cd0c2139SMatthew G Knepley       const PetscInt *support;
1257394c2f0fSMatthew G. Knepley       DMPolytopeType  ct;
12584c367dbcSMatthew G. Knepley       PetscInt        coneSize, supportSize, qf, qn, qp, e;
1259cd0c2139SMatthew G Knepley 
12609566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
12619566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize));
12629566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
12639566063dSJacob Faibussowitsch       PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize));
12649566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, oldp, &ct));
12659566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCellType(sdm, splitp, ct));
1266cd0c2139SMatthew G Knepley       if (dep == depth - 1) {
12674c367dbcSMatthew G. Knepley         const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
12684c367dbcSMatthew G. Knepley 
1269cd0c2139SMatthew G Knepley         /* Add cohesive cells, they are prisms */
12709566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize));
1271412e9a14SMatthew G. Knepley         switch (coneSize) {
1272d71ae5a4SJacob Faibussowitsch         case 2:
1273d71ae5a4SJacob Faibussowitsch           PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));
1274d71ae5a4SJacob Faibussowitsch           break;
1275d71ae5a4SJacob Faibussowitsch         case 3:
1276d71ae5a4SJacob Faibussowitsch           PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));
1277d71ae5a4SJacob Faibussowitsch           break;
1278d71ae5a4SJacob Faibussowitsch         case 4:
1279d71ae5a4SJacob Faibussowitsch           PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));
1280d71ae5a4SJacob Faibussowitsch           break;
1281412e9a14SMatthew G. Knepley         }
1282b6dfa339SMatthew G. Knepley         /* Shared fault faces with only one support cell now have two with the cohesive cell */
1283b6dfa339SMatthew G. Knepley         /*   TODO Check thaat oldp has rootdegree == 1 */
1284b6dfa339SMatthew G. Knepley         if (supportSize == 1) {
1285b6dfa339SMatthew G. Knepley           const PetscInt *support;
1286b6dfa339SMatthew G. Knepley           PetscInt        val;
1287b6dfa339SMatthew G. Knepley 
1288b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetSupport(dm, oldp, &support));
1289b6dfa339SMatthew G. Knepley           PetscCall(DMLabelGetValue(label, support[0], &val));
1290b6dfa339SMatthew G. Knepley           if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2));
1291b6dfa339SMatthew G. Knepley           else PetscCall(DMPlexSetSupportSize(sdm, newp, 2));
1292b6dfa339SMatthew G. Knepley         }
1293cd0c2139SMatthew G Knepley       } else if (dep == 0) {
12944c367dbcSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1295cd0c2139SMatthew G Knepley 
12969566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, oldp, &support));
12974c367dbcSMatthew G. Knepley         for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1298cd0c2139SMatthew G Knepley           PetscInt val;
1299cd0c2139SMatthew G Knepley 
13009566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
13014c367dbcSMatthew G. Knepley           if (val == 1) ++qf;
13024c367dbcSMatthew G. Knepley           if ((val == 1) || (val == (shift + 1))) ++qn;
13034c367dbcSMatthew G. Knepley           if ((val == 1) || (val == -(shift + 1))) ++qp;
1304cd0c2139SMatthew G Knepley         }
13054c367dbcSMatthew G. Knepley         /* Split old vertex: Edges into original vertex and new cohesive edge */
13069566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1));
13074c367dbcSMatthew G. Knepley         /* Split new vertex: Edges into split vertex and new cohesive edge */
13089566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1));
13094c367dbcSMatthew G. Knepley         /* Add hybrid edge */
13109566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
13119566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
13129566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
1313cd0c2139SMatthew G Knepley       } else if (dep == dim - 2) {
13144c367dbcSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
13154c367dbcSMatthew G. Knepley 
13169566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, oldp, &support));
13174c367dbcSMatthew G. Knepley         for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) {
1318cd0c2139SMatthew G Knepley           PetscInt val;
1319cd0c2139SMatthew G Knepley 
13209566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
13214c367dbcSMatthew G. Knepley           if (val == dim - 1) ++qf;
13224c367dbcSMatthew G. Knepley           if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn;
13234c367dbcSMatthew G. Knepley           if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp;
1324cd0c2139SMatthew G Knepley         }
13254c367dbcSMatthew G. Knepley         /* Split old edge: Faces into original edge and cohesive face (positive side?) */
13269566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1));
13274c367dbcSMatthew G. Knepley         /* Split new edge: Faces into split edge and cohesive face (negative side?) */
13289566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1));
13294c367dbcSMatthew G. Knepley         /* Add hybrid face */
13309566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
13319566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
13329566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1333cd0c2139SMatthew G Knepley       }
1334cd0c2139SMatthew G Knepley     }
1335cd0c2139SMatthew G Knepley   }
133618c5995bSMatthew G. Knepley   for (dep = 0; dep <= depth; ++dep) {
133718c5995bSMatthew G. Knepley     for (p = 0; p < numUnsplitPoints[dep]; ++p) {
133818c5995bSMatthew G. Knepley       const PetscInt  oldp = unsplitPoints[dep][p];
13392582d50cSToby Isaac       const PetscInt  newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
134018c5995bSMatthew G. Knepley       const PetscInt *support;
1341da1dd7e4SMatthew G. Knepley       PetscInt        coneSize, supportSize, qf, e, s;
134218c5995bSMatthew G. Knepley 
13439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
13449566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
13459566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
134618c5995bSMatthew G. Knepley       if (dep == 0) {
134718c5995bSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
134818c5995bSMatthew G. Knepley 
134939254ff6SMatthew G. Knepley         /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */
135039254ff6SMatthew G. Knepley         for (s = 0, qf = 0; s < supportSize; ++s, ++qf) {
13519566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e));
135239254ff6SMatthew G. Knepley           if (e >= 0) ++qf;
135339254ff6SMatthew G. Knepley         }
13549566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2));
135518c5995bSMatthew G. Knepley         /* Add hybrid edge */
13569566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybedge, 2));
1357e1757548SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
1358e1757548SMatthew G. Knepley           PetscInt val;
1359e1757548SMatthew G. Knepley 
13609566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1361e1757548SMatthew G. Knepley           /* Split and unsplit edges produce hybrid faces */
1362da1dd7e4SMatthew G. Knepley           if (val == 1) ++qf;
1363da1dd7e4SMatthew G. Knepley           if (val == (shift2 + 1)) ++qf;
1364e1757548SMatthew G. Knepley         }
13659566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf));
13669566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR));
136718c5995bSMatthew G. Knepley       } else if (dep == dim - 2) {
136818c5995bSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
1369cd0c2139SMatthew G Knepley         PetscInt       val;
1370cd0c2139SMatthew G Knepley 
1371da1dd7e4SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
13729566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1373da1dd7e4SMatthew G. Knepley           if (val == dim - 1) qf += 2;
1374da1dd7e4SMatthew G. Knepley           else ++qf;
1375cd0c2139SMatthew G Knepley         }
137618c5995bSMatthew G. Knepley         /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */
13779566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2));
137818c5995bSMatthew G. Knepley         /* Add hybrid face */
1379da1dd7e4SMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
13809566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1381da1dd7e4SMatthew G. Knepley           if (val == dim - 1) ++qf;
1382da1dd7e4SMatthew G. Knepley         }
13839566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(sdm, hybface, 4));
13849566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupportSize(sdm, hybface, qf));
13859566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR));
1386cd0c2139SMatthew G Knepley       }
1387cd0c2139SMatthew G Knepley     }
1388cd0c2139SMatthew G Knepley   }
1389cd0c2139SMatthew G Knepley   /* Step 4: Setup split DM */
13909566063dSJacob Faibussowitsch   PetscCall(DMSetUp(sdm));
13919566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm));
13929566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew));
13939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew));
1394cd0c2139SMatthew G Knepley   /* Step 6: Set cones and supports for new points */
1395cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1396cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
1397cd0c2139SMatthew G Knepley       const PetscInt  oldp   = splitPoints[dep][p];
13982582d50cSToby Isaac       const PetscInt  newp   = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
13994c367dbcSMatthew G. Knepley       const PetscInt  splitp = p + pMaxNew[dep];
1400cd0c2139SMatthew G Knepley       const PetscInt *cone, *support, *ornt;
1401b5a892a1SMatthew G. Knepley       DMPolytopeType  ct;
14024c367dbcSMatthew G. Knepley       PetscInt        coneSize, supportSize, q, qf, qn, qp, v, e, s;
1403cd0c2139SMatthew G Knepley 
14049566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCellType(dm, oldp, &ct));
14059566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
14069566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, oldp, &cone));
14079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt));
14089566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
14099566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
1410cd0c2139SMatthew G Knepley       if (dep == depth - 1) {
141196a07cd0SMatthew G. Knepley         PetscBool       hasUnsplit = PETSC_FALSE;
14124c367dbcSMatthew G. Knepley         const PetscInt  hybcell    = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1413cd0c2139SMatthew G Knepley         const PetscInt *supportF;
1414cd0c2139SMatthew G Knepley 
1415b6dfa339SMatthew G. Knepley         coneONew[0] = coneONew[1] = -1000;
1416cd0c2139SMatthew G Knepley         /* Split face:       copy in old face to new face to start */
14179566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(sdm, newp, &supportF));
14189566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportF));
1419cd0c2139SMatthew G Knepley         /* Split old face:   old vertices/edges in cone so no change */
1420cd0c2139SMatthew G Knepley         /* Split new face:   new vertices/edges in cone */
1421cd0c2139SMatthew G Knepley         for (q = 0; q < coneSize; ++q) {
14229566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
142318c5995bSMatthew G. Knepley           if (v < 0) {
14249566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
142563a3b9bcSJacob Faibussowitsch             PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1);
14262582d50cSToby Isaac             coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
142796a07cd0SMatthew G. Knepley             hasUnsplit     = PETSC_TRUE;
142818c5995bSMatthew G. Knepley           } else {
14294c367dbcSMatthew G. Knepley             coneNew[2 + q] = v + pMaxNew[dep - 1];
1430163235baSMatthew G. Knepley             if (dep > 1) {
1431163235baSMatthew G. Knepley               const PetscInt *econe;
1432163235baSMatthew G. Knepley               PetscInt        econeSize, r, vs, vu;
1433163235baSMatthew G. Knepley 
14349566063dSJacob Faibussowitsch               PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize));
14359566063dSJacob Faibussowitsch               PetscCall(DMPlexGetCone(dm, cone[q], &econe));
1436163235baSMatthew G. Knepley               for (r = 0; r < econeSize; ++r) {
14379566063dSJacob Faibussowitsch                 PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs));
14389566063dSJacob Faibussowitsch                 PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu));
1439163235baSMatthew G. Knepley                 if (vs >= 0) continue;
144063a3b9bcSJacob Faibussowitsch                 PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2);
1441163235baSMatthew G. Knepley                 hasUnsplit = PETSC_TRUE;
1442163235baSMatthew G. Knepley               }
1443163235baSMatthew G. Knepley             }
1444cd0c2139SMatthew G Knepley           }
1445cd0c2139SMatthew G Knepley         }
14469566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2]));
14479566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt));
1448e537020bSMatthew G. Knepley         /* Face support */
1449b6dfa339SMatthew G. Knepley         PetscInt vals[2];
1450cd0c2139SMatthew G Knepley 
1451b6dfa339SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, support[0], &vals[0]));
1452b6dfa339SMatthew G. Knepley         if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1]));
1453b6dfa339SMatthew G. Knepley         else vals[1] = -vals[0];
1454b6dfa339SMatthew G. Knepley         PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]);
1455b6dfa339SMatthew G. Knepley 
1456b6dfa339SMatthew G. Knepley         for (s = 0; s < 2; ++s) {
1457b6dfa339SMatthew G. Knepley           if (s >= supportSize) {
1458b6dfa339SMatthew G. Knepley             if (vals[s] < 0) {
1459b6dfa339SMatthew G. Knepley               /* Ghost old face:   Replace negative side cell with cohesive cell */
1460accc9626SMatthew G. Knepley               PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell));
1461b6dfa339SMatthew G. Knepley             } else {
1462b6dfa339SMatthew G. Knepley               /* Ghost new face:   Replace positive side cell with cohesive cell */
1463accc9626SMatthew G. Knepley               PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1464b6dfa339SMatthew G. Knepley             }
1465b6dfa339SMatthew G. Knepley           } else {
1466b6dfa339SMatthew G. Knepley             if (vals[s] < 0) {
1467cd0c2139SMatthew G Knepley               /* Split old face:   Replace negative side cell with cohesive cell */
14689566063dSJacob Faibussowitsch               PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell));
1469cd0c2139SMatthew G Knepley             } else {
1470cd0c2139SMatthew G Knepley               /* Split new face:   Replace positive side cell with cohesive cell */
14719566063dSJacob Faibussowitsch               PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell));
1472b6dfa339SMatthew G. Knepley             }
1473b6dfa339SMatthew G. Knepley           }
1474b6dfa339SMatthew G. Knepley         }
1475b6dfa339SMatthew G. Knepley         /* Get orientation for cohesive face using the positive side cell */
1476e537020bSMatthew G. Knepley         {
1477e537020bSMatthew G. Knepley           const PetscInt *ncone, *nconeO;
1478b6dfa339SMatthew G. Knepley           PetscInt        nconeSize, nc, ocell;
1479accc9626SMatthew G. Knepley           PetscBool       flip = PETSC_FALSE;
1480e537020bSMatthew G. Knepley 
14819371c9d4SSatish Balay           if (supportSize > 1) {
14829371c9d4SSatish Balay             ocell = vals[0] < 0 ? support[1] : support[0];
14839371c9d4SSatish Balay           } else {
14849371c9d4SSatish Balay             ocell = support[0];
14859371c9d4SSatish Balay             flip  = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;
14869371c9d4SSatish Balay           }
1487b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize));
1488b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetCone(dm, ocell, &ncone));
1489e1a13daeSMatthew G. Knepley           PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO));
1490e537020bSMatthew G. Knepley           for (nc = 0; nc < nconeSize; ++nc) {
1491e537020bSMatthew G. Knepley             if (ncone[nc] == oldp) {
1492b6dfa339SMatthew G. Knepley               coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc];
1493e537020bSMatthew G. Knepley               break;
1494cd0c2139SMatthew G Knepley             }
1495cd0c2139SMatthew G Knepley           }
1496b6dfa339SMatthew G. Knepley           PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell);
1497e537020bSMatthew G. Knepley         }
14984c367dbcSMatthew G. Knepley         /* Cohesive cell:    Old and new split face, then new cohesive faces */
1499b6dfa339SMatthew G. Knepley         {
1500b6dfa339SMatthew G. Knepley           const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2;
1501b6dfa339SMatthew G. Knepley           PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]);
1502b6dfa339SMatthew G. Knepley         }
1503b5a892a1SMatthew G. Knepley         const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]);
1504b5a892a1SMatthew G. Knepley 
1505fd4b9f15SMatthew G. Knepley         coneNew[0]  = newp; /* Extracted negative side orientation above */
15064c367dbcSMatthew G. Knepley         coneNew[1]  = splitp;
15074c367dbcSMatthew G. Knepley         coneONew[1] = coneONew[0];
1508e537020bSMatthew G. Knepley         for (q = 0; q < coneSize; ++q) {
1509412e9a14SMatthew G. Knepley           /* Hybrid faces must follow order from oriented end face */
1510b5a892a1SMatthew G. Knepley           const PetscInt qa = arr[q * 2 + 0];
1511b5a892a1SMatthew G. Knepley           const PetscInt qo = arr[q * 2 + 1];
1512b5a892a1SMatthew G. Knepley           DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT;
1513412e9a14SMatthew G. Knepley 
15149566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
151518c5995bSMatthew G. Knepley           if (v < 0) {
15169566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
151718c5995bSMatthew G. Knepley             coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
151818c5995bSMatthew G. Knepley           } else {
151918c5995bSMatthew G. Knepley             coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep];
152018c5995bSMatthew G. Knepley           }
1521b5a892a1SMatthew G. Knepley           coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]);
1522e537020bSMatthew G. Knepley         }
15239566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybcell, coneNew));
15249566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew));
152596a07cd0SMatthew G. Knepley         /* Label the hybrid cells on the boundary of the split */
15269566063dSJacob Faibussowitsch         if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim));
1527cd0c2139SMatthew G Knepley       } else if (dep == 0) {
15284c367dbcSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
1529cd0c2139SMatthew G Knepley 
1530cd0c2139SMatthew G Knepley         /* Split old vertex: Edges in old split faces and new cohesive edge */
15314c367dbcSMatthew G. Knepley         for (e = 0, qn = 0; e < supportSize; ++e) {
1532cd0c2139SMatthew G Knepley           PetscInt val;
1533cd0c2139SMatthew G Knepley 
15349566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1535ad540459SPierre Jolivet           if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1536cd0c2139SMatthew G Knepley         }
15374c367dbcSMatthew G. Knepley         supportNew[qn] = hybedge;
15389566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1539cd0c2139SMatthew G Knepley         /* Split new vertex: Edges in new split faces and new cohesive edge */
15404c367dbcSMatthew G. Knepley         for (e = 0, qp = 0; e < supportSize; ++e) {
1541cd0c2139SMatthew G Knepley           PetscInt val, edge;
1542cd0c2139SMatthew G Knepley 
15439566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1544cd0c2139SMatthew G Knepley           if (val == 1) {
15459566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
154663a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
15474c367dbcSMatthew G. Knepley             supportNew[qp++] = edge + pMaxNew[dep + 1];
1548cd0c2139SMatthew G Knepley           } else if (val == -(shift + 1)) {
15492582d50cSToby Isaac             supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1550cd0c2139SMatthew G Knepley           }
1551cd0c2139SMatthew G Knepley         }
15524c367dbcSMatthew G. Knepley         supportNew[qp] = hybedge;
15539566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
15544c367dbcSMatthew G. Knepley         /* Hybrid edge:    Old and new split vertex */
1555cd0c2139SMatthew G Knepley         coneNew[0] = newp;
1556cd0c2139SMatthew G Knepley         coneNew[1] = splitp;
15579566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
15584c367dbcSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
15594c367dbcSMatthew G. Knepley           PetscInt val, edge;
15604c367dbcSMatthew G. Knepley 
15619566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
15624c367dbcSMatthew G. Knepley           if (val == 1) {
15639566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
156463a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
15654c367dbcSMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
15664c367dbcSMatthew G. Knepley           }
15674c367dbcSMatthew G. Knepley         }
15689566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1569cd0c2139SMatthew G Knepley       } else if (dep == dim - 2) {
15704c367dbcSMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
15714c367dbcSMatthew G. Knepley 
1572cd0c2139SMatthew G Knepley         /* Split old edge:   old vertices in cone so no change */
1573cd0c2139SMatthew G Knepley         /* Split new edge:   new vertices in cone */
1574cd0c2139SMatthew G Knepley         for (q = 0; q < coneSize; ++q) {
15759566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v));
1576e1757548SMatthew G. Knepley           if (v < 0) {
15779566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
157863a3b9bcSJacob Faibussowitsch             PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1);
15792582d50cSToby Isaac             coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/;
1580e1757548SMatthew G. Knepley           } else {
15814c367dbcSMatthew G. Knepley             coneNew[q] = v + pMaxNew[dep - 1];
1582cd0c2139SMatthew G Knepley           }
1583e1757548SMatthew G. Knepley         }
15849566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, splitp, coneNew));
1585cd0c2139SMatthew G Knepley         /* Split old edge: Faces in positive side cells and old split faces */
1586cd0c2139SMatthew G Knepley         for (e = 0, q = 0; e < supportSize; ++e) {
1587cd0c2139SMatthew G Knepley           PetscInt val;
1588cd0c2139SMatthew G Knepley 
15899566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
15904c367dbcSMatthew G. Knepley           if (val == dim - 1) {
15912582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
15924c367dbcSMatthew G. Knepley           } else if (val == (shift + dim - 1)) {
15932582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1594cd0c2139SMatthew G Knepley           }
1595cd0c2139SMatthew G Knepley         }
1596b279cd2aSMatthew G. Knepley         supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
15979566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1598cd0c2139SMatthew G Knepley         /* Split new edge: Faces in negative side cells and new split faces */
1599cd0c2139SMatthew G Knepley         for (e = 0, q = 0; e < supportSize; ++e) {
1600cd0c2139SMatthew G Knepley           PetscInt val, face;
1601cd0c2139SMatthew G Knepley 
16029566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
1603cd0c2139SMatthew G Knepley           if (val == dim - 1) {
16049566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
160563a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
16064c367dbcSMatthew G. Knepley             supportNew[q++] = face + pMaxNew[dep + 1];
1607cd0c2139SMatthew G Knepley           } else if (val == -(shift + dim - 1)) {
16082582d50cSToby Isaac             supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/;
1609cd0c2139SMatthew G Knepley           }
1610cd0c2139SMatthew G Knepley         }
1611b279cd2aSMatthew G. Knepley         supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1];
16129566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, splitp, supportNew));
16134c367dbcSMatthew G. Knepley         /* Hybrid face */
16144c367dbcSMatthew G. Knepley         coneNew[0] = newp;
16154c367dbcSMatthew G. Knepley         coneNew[1] = splitp;
16164c367dbcSMatthew G. Knepley         for (v = 0; v < coneSize; ++v) {
16174c367dbcSMatthew G. Knepley           PetscInt vertex;
16189566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex));
1619e1757548SMatthew G. Knepley           if (vertex < 0) {
16209566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex));
162163a3b9bcSJacob Faibussowitsch             PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1);
1622e1757548SMatthew G. Knepley             coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
1623e1757548SMatthew G. Knepley           } else {
16244c367dbcSMatthew G. Knepley             coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep];
16254c367dbcSMatthew G. Knepley           }
1626e1757548SMatthew G. Knepley         }
16279566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
16284c367dbcSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
16294c367dbcSMatthew G. Knepley           PetscInt val, face;
16304c367dbcSMatthew G. Knepley 
16319566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
16324c367dbcSMatthew G. Knepley           if (val == dim - 1) {
16339566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
163463a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]);
16354c367dbcSMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
16364c367dbcSMatthew G. Knepley           }
16374c367dbcSMatthew G. Knepley         }
16389566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1639cd0c2139SMatthew G Knepley       }
1640cd0c2139SMatthew G Knepley     }
1641cd0c2139SMatthew G Knepley   }
164218c5995bSMatthew G. Knepley   for (dep = 0; dep <= depth; ++dep) {
164318c5995bSMatthew G. Knepley     for (p = 0; p < numUnsplitPoints[dep]; ++p) {
164418c5995bSMatthew G. Knepley       const PetscInt  oldp = unsplitPoints[dep][p];
16452582d50cSToby Isaac       const PetscInt  newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/;
1646b5a892a1SMatthew G. Knepley       const PetscInt *cone, *support;
1647e1757548SMatthew G. Knepley       PetscInt        coneSize, supportSize, supportSizeNew, q, qf, e, f, s;
164818c5995bSMatthew G. Knepley 
16499566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize));
16509566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, oldp, &cone));
16519566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize));
16529566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, oldp, &support));
165318c5995bSMatthew G. Knepley       if (dep == 0) {
165418c5995bSMatthew G. Knepley         const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
165518c5995bSMatthew G. Knepley 
165618c5995bSMatthew G. Knepley         /* Unsplit vertex */
16579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
165818c5995bSMatthew G. Knepley         for (s = 0, q = 0; s < supportSize; ++s) {
16592582d50cSToby Isaac           supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/;
16609566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e));
1661ad540459SPierre Jolivet           if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1];
166218c5995bSMatthew G. Knepley         }
166318c5995bSMatthew G. Knepley         supportNew[q++] = hybedge;
166418c5995bSMatthew G. Knepley         supportNew[q++] = hybedge;
166563a3b9bcSJacob Faibussowitsch         PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp);
16669566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
166718c5995bSMatthew G. Knepley         /* Hybrid edge */
166818c5995bSMatthew G. Knepley         coneNew[0] = newp;
166918c5995bSMatthew G. Knepley         coneNew[1] = newp;
16709566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybedge, coneNew));
167118c5995bSMatthew G. Knepley         for (e = 0, qf = 0; e < supportSize; ++e) {
167218c5995bSMatthew G. Knepley           PetscInt val, edge;
167318c5995bSMatthew G. Knepley 
16749566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[e], &val));
167518c5995bSMatthew G. Knepley           if (val == 1) {
16769566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge));
167763a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]);
167818c5995bSMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
1679e1757548SMatthew G. Knepley           } else if (val == (shift2 + 1)) {
16809566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge));
168163a3b9bcSJacob Faibussowitsch             PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]);
1682e1757548SMatthew G. Knepley             supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1];
168318c5995bSMatthew G. Knepley           }
168418c5995bSMatthew G. Knepley         }
16859566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew));
1686e1757548SMatthew G. Knepley       } else if (dep == dim - 2) {
1687e1757548SMatthew G. Knepley         const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep];
1688e1757548SMatthew G. Knepley 
1689da1dd7e4SMatthew G. Knepley         /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */
1690e1757548SMatthew G. Knepley         for (f = 0, qf = 0; f < supportSize; ++f) {
1691e1757548SMatthew G. Knepley           PetscInt val, face;
1692e1757548SMatthew G. Knepley 
16939566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[f], &val));
1694e1757548SMatthew G. Knepley           if (val == dim - 1) {
16959566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
169663a3b9bcSJacob Faibussowitsch             PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]);
16972582d50cSToby Isaac             supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1698e1757548SMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep + 1];
1699e1757548SMatthew G. Knepley           } else {
17002582d50cSToby Isaac             supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/;
1701e1757548SMatthew G. Knepley           }
1702e1757548SMatthew G. Knepley         }
1703e1757548SMatthew G. Knepley         supportNew[qf++] = hybface;
1704e1757548SMatthew G. Knepley         supportNew[qf++] = hybface;
17059566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew));
170663a3b9bcSJacob Faibussowitsch         PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew);
17079566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, newp, supportNew));
1708e1757548SMatthew G. Knepley         /* Add hybrid face */
1709e1757548SMatthew G. Knepley         coneNew[0] = newp;
1710212cc919SMatthew G. Knepley         coneNew[1] = newp;
17119566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
171263a3b9bcSJacob Faibussowitsch         PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]);
1713212cc919SMatthew G. Knepley         coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
17149566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v));
171563a3b9bcSJacob Faibussowitsch         PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]);
1716e1757548SMatthew G. Knepley         coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1];
17179566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCone(sdm, hybface, coneNew));
1718da1dd7e4SMatthew G. Knepley         for (f = 0, qf = 0; f < supportSize; ++f) {
1719da1dd7e4SMatthew G. Knepley           PetscInt val, face;
1720da1dd7e4SMatthew G. Knepley 
17219566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(label, support[f], &val));
1722da1dd7e4SMatthew G. Knepley           if (val == dim - 1) {
17239566063dSJacob Faibussowitsch             PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face));
1724da1dd7e4SMatthew G. Knepley             supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2];
1725da1dd7e4SMatthew G. Knepley           }
1726da1dd7e4SMatthew G. Knepley         }
17279566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew));
172863a3b9bcSJacob Faibussowitsch         PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew);
17299566063dSJacob Faibussowitsch         PetscCall(DMPlexSetSupport(sdm, hybface, supportNew));
1730cd0c2139SMatthew G Knepley       }
1731cd0c2139SMatthew G Knepley     }
1732cd0c2139SMatthew G Knepley   }
1733cd0c2139SMatthew G Knepley   /* Step 6b: Replace split points in negative side cones */
1734cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1735cd0c2139SMatthew G Knepley     PetscInt        dep = values[sp];
1736cd0c2139SMatthew G Knepley     IS              pIS;
1737cd0c2139SMatthew G Knepley     PetscInt        numPoints;
1738cd0c2139SMatthew G Knepley     const PetscInt *points;
1739cd0c2139SMatthew G Knepley 
1740cd0c2139SMatthew G Knepley     if (dep >= 0) continue;
17419566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, dep, &pIS));
1742cd0c2139SMatthew G Knepley     if (!pIS) continue;
1743cd0c2139SMatthew G Knepley     dep = -dep - shift;
17449566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(pIS, &numPoints));
17459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(pIS, &points));
1746cd0c2139SMatthew G Knepley     for (p = 0; p < numPoints; ++p) {
1747cd0c2139SMatthew G Knepley       const PetscInt  oldp = points[p];
17482582d50cSToby Isaac       const PetscInt  newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/;
1749cd0c2139SMatthew G Knepley       const PetscInt *cone;
1750cd0c2139SMatthew G Knepley       PetscInt        coneSize, c;
175150cf782dSMatthew G. Knepley       /* PetscBool       replaced = PETSC_FALSE; */
1752cd0c2139SMatthew G Knepley 
1753cd0c2139SMatthew G Knepley       /* Negative edge: replace split vertex */
1754cd0c2139SMatthew G Knepley       /* Negative cell: replace split face */
17559566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize));
17569566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(sdm, newp, &cone));
1757cd0c2139SMatthew G Knepley       for (c = 0; c < coneSize; ++c) {
1758e38fbfedSToby Isaac         const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift);
1759cd0c2139SMatthew G Knepley         PetscInt       csplitp, cp, val;
1760cd0c2139SMatthew G Knepley 
17619566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, coldp, &val));
1762cd0c2139SMatthew G Knepley         if (val == dep - 1) {
17639566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp));
176463a3b9bcSJacob Faibussowitsch           PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1);
1765cd0c2139SMatthew G Knepley           csplitp = pMaxNew[dep - 1] + cp;
17669566063dSJacob Faibussowitsch           PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp));
176750cf782dSMatthew G. Knepley           /* replaced = PETSC_TRUE; */
1768cd0c2139SMatthew G Knepley         }
1769cd0c2139SMatthew G Knepley       }
17704a189a86SMatthew G. Knepley       /* Cells with only a vertex or edge on the submesh have no replacement */
177128b400f6SJacob Faibussowitsch       /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */
1772cd0c2139SMatthew G Knepley     }
17739566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(pIS, &points));
17749566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pIS));
1775cd0c2139SMatthew G Knepley   }
1776fa8e8ae5SToby Isaac   /* Step 7: Coordinates */
17779566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm));
17789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateSection(sdm, &coordSection));
17799566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(sdm, &coordinates));
17809566063dSJacob Faibussowitsch   PetscCall(VecGetArray(coordinates, &coords));
1781cd0c2139SMatthew G Knepley   for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) {
17822582d50cSToby Isaac     const PetscInt newp   = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/;
1783cd0c2139SMatthew G Knepley     const PetscInt splitp = pMaxNew[0] + v;
1784cd0c2139SMatthew G Knepley     PetscInt       dof, off, soff, d;
1785cd0c2139SMatthew G Knepley 
17869566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(coordSection, newp, &dof));
17879566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, newp, &off));
17889566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff));
1789cd0c2139SMatthew G Knepley     for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d];
1790cd0c2139SMatthew G Knepley   }
17919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(coordinates, &coords));
1792fa8e8ae5SToby Isaac   /* Step 8: SF, if I can figure this out we can split the mesh in parallel */
17939566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm));
1794b6dfa339SMatthew G. Knepley   /*   TODO We need to associate the ghost points with the correct replica */
1795fa8e8ae5SToby Isaac   /* Step 9: Labels */
17969566063dSJacob Faibussowitsch   PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm));
17979566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm));
17989566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(sdm, &numLabels));
1799cd0c2139SMatthew G Knepley   for (dep = 0; dep <= depth; ++dep) {
1800cd0c2139SMatthew G Knepley     for (p = 0; p < numSplitPoints[dep]; ++p) {
18012582d50cSToby Isaac       const PetscInt newp   = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/;
1802cd0c2139SMatthew G Knepley       const PetscInt splitp = pMaxNew[dep] + p;
1803cd0c2139SMatthew G Knepley       PetscInt       l;
1804cd0c2139SMatthew G Knepley 
18057db7e0a7SMatthew G. Knepley       if (splitLabel) {
18067db7e0a7SMatthew G. Knepley         const PetscInt val = 100 + dep;
18077db7e0a7SMatthew G. Knepley 
18089566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(splitLabel, newp, val));
18099566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(splitLabel, splitp, -val));
18107db7e0a7SMatthew G. Knepley       }
1811cd0c2139SMatthew G Knepley       for (l = 0; l < numLabels; ++l) {
1812cd0c2139SMatthew G Knepley         DMLabel     mlabel;
1813cd0c2139SMatthew G Knepley         const char *lname;
1814cd0c2139SMatthew G Knepley         PetscInt    val;
18159a356370SMatthew G. Knepley         PetscBool   isDepth;
1816cd0c2139SMatthew G Knepley 
18179566063dSJacob Faibussowitsch         PetscCall(DMGetLabelName(sdm, l, &lname));
18189566063dSJacob Faibussowitsch         PetscCall(PetscStrcmp(lname, "depth", &isDepth));
18199a356370SMatthew G. Knepley         if (isDepth) continue;
18209566063dSJacob Faibussowitsch         PetscCall(DMGetLabel(sdm, lname, &mlabel));
18219566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(mlabel, newp, &val));
182248a46eb9SPierre Jolivet         if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val));
1823cd0c2139SMatthew G Knepley       }
1824cd0c2139SMatthew G Knepley     }
1825cd0c2139SMatthew G Knepley   }
1826cd0c2139SMatthew G Knepley   for (sp = 0; sp < numSP; ++sp) {
1827cd0c2139SMatthew G Knepley     const PetscInt dep = values[sp];
1828cd0c2139SMatthew G Knepley 
1829cd0c2139SMatthew G Knepley     if ((dep < 0) || (dep > depth)) continue;
18309566063dSJacob Faibussowitsch     if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep]));
18319566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&splitIS[dep]));
18329566063dSJacob Faibussowitsch     if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]));
18339566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&unsplitIS[dep]));
1834cd0c2139SMatthew G Knepley   }
1835b6dfa339SMatthew G. Knepley   if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints));
1836b6dfa339SMatthew G. Knepley   PetscCall(ISDestroy(&ghostIS));
1837cd0c2139SMatthew G Knepley   if (label) {
18389566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
18399566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
1840cd0c2139SMatthew G Knepley   }
18410d4d4d06SMatthew G. Knepley   for (d = 0; d <= depth; ++d) {
18429566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd));
184336dbac82SMatthew G. Knepley     pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d];
18440d4d4d06SMatthew G. Knepley   }
18459566063dSJacob Faibussowitsch   PetscCall(PetscFree3(coneNew, coneONew, supportNew));
18469566063dSJacob Faibussowitsch   PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld));
18479566063dSJacob Faibussowitsch   PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints));
18483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1849cd0c2139SMatthew G Knepley }
1850cd0c2139SMatthew G Knepley 
1851cd0c2139SMatthew G Knepley /*@C
1852cd0c2139SMatthew G Knepley   DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface
1853cd0c2139SMatthew G Knepley 
1854cd0c2139SMatthew G Knepley   Collective on dm
1855cd0c2139SMatthew G Knepley 
1856cd0c2139SMatthew G Knepley   Input Parameters:
1857cd0c2139SMatthew G Knepley + dm - The original DM
185853156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated)
1859cd0c2139SMatthew G Knepley 
1860cd0c2139SMatthew G Knepley   Output Parameters:
18617db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired
1862cd0c2139SMatthew G Knepley - dmSplit - The new DM
1863cd0c2139SMatthew G Knepley 
1864cd0c2139SMatthew G Knepley   Level: developer
1865cd0c2139SMatthew G Knepley 
1866db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()`
1867cd0c2139SMatthew G Knepley @*/
1868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit)
1869d71ae5a4SJacob Faibussowitsch {
1870cd0c2139SMatthew G Knepley   DM       sdm;
1871cd0c2139SMatthew G Knepley   PetscInt dim;
1872cd0c2139SMatthew G Knepley 
1873cd0c2139SMatthew G Knepley   PetscFunctionBegin;
1874cd0c2139SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1875064a246eSJacob Faibussowitsch   PetscValidPointer(dmSplit, 4);
18769566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm));
18779566063dSJacob Faibussowitsch   PetscCall(DMSetType(sdm, DMPLEX));
18789566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
18799566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(sdm, dim));
1880cd0c2139SMatthew G Knepley   switch (dim) {
1881cd0c2139SMatthew G Knepley   case 2:
1882d71ae5a4SJacob Faibussowitsch   case 3:
1883d71ae5a4SJacob Faibussowitsch     PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm));
1884d71ae5a4SJacob Faibussowitsch     break;
1885d71ae5a4SJacob Faibussowitsch   default:
1886d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim);
1887cd0c2139SMatthew G Knepley   }
1888cd0c2139SMatthew G Knepley   *dmSplit = sdm;
18893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1890cd0c2139SMatthew G Knepley }
1891cd0c2139SMatthew G Knepley 
18920f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */
1893d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos)
1894d71ae5a4SJacob Faibussowitsch {
18950f66a230SMatthew G. Knepley   const PetscInt *cone, *ornt;
18960f66a230SMatthew G. Knepley   PetscInt        dim, coneSize, c;
18970f66a230SMatthew G. Knepley 
18980f66a230SMatthew G. Knepley   PetscFunctionBegin;
18990f66a230SMatthew G. Knepley   *pos = PETSC_TRUE;
19009566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
19019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
19029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, cell, &cone));
19039566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt));
19040f66a230SMatthew G. Knepley   for (c = 0; c < coneSize; ++c) {
19050f66a230SMatthew G. Knepley     if (cone[c] == face) {
19060f66a230SMatthew G. Knepley       PetscInt o = ornt[c];
19070f66a230SMatthew G. Knepley 
19080f66a230SMatthew G. Knepley       if (subdm) {
19090f66a230SMatthew G. Knepley         const PetscInt *subcone, *subornt;
19100f66a230SMatthew G. Knepley         PetscInt        subpoint, subface, subconeSize, sc;
19110f66a230SMatthew G. Knepley 
19129566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint));
19139566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface));
19149566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
19159566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(subdm, subpoint, &subcone));
19169566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt));
19170f66a230SMatthew G. Knepley         for (sc = 0; sc < subconeSize; ++sc) {
19180f66a230SMatthew G. Knepley           if (subcone[sc] == subface) {
19190f66a230SMatthew G. Knepley             o = subornt[0];
19200f66a230SMatthew G. Knepley             break;
19210f66a230SMatthew G. Knepley           }
19220f66a230SMatthew G. Knepley         }
192363a3b9bcSJacob Faibussowitsch         PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell);
19240f66a230SMatthew G. Knepley       }
19250f66a230SMatthew G. Knepley       if (o >= 0) *pos = PETSC_TRUE;
19260f66a230SMatthew G. Knepley       else *pos = PETSC_FALSE;
19270f66a230SMatthew G. Knepley       break;
19280f66a230SMatthew G. Knepley     }
19290f66a230SMatthew G. Knepley   }
193063a3b9bcSJacob Faibussowitsch   PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face);
19313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19320f66a230SMatthew G. Knepley }
19330f66a230SMatthew G. Knepley 
1934d71ae5a4SJacob Faibussowitsch static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label)
1935d71ae5a4SJacob Faibussowitsch {
1936accc9626SMatthew G. Knepley   IS              facePosIS, faceNegIS, dimIS;
1937accc9626SMatthew G. Knepley   const PetscInt *points;
1938accc9626SMatthew G. Knepley   PetscInt        dim, numPoints, p, shift = 100, shift2 = 200;
1939accc9626SMatthew G. Knepley 
1940accc9626SMatthew G. Knepley   PetscFunctionBegin;
1941accc9626SMatthew G. Knepley   PetscCall(DMGetDimension(dm, &dim));
1942accc9626SMatthew G. Knepley   /* If any faces touching the fault divide cells on either side, split them */
1943accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS));
1944accc9626SMatthew G. Knepley   PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS));
1945accc9626SMatthew G. Knepley   if (!facePosIS || !faceNegIS) {
1946accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&facePosIS));
1947accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&faceNegIS));
19483ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1949accc9626SMatthew G. Knepley   }
1950accc9626SMatthew G. Knepley   PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS));
1951accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&facePosIS));
1952accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&faceNegIS));
1953accc9626SMatthew G. Knepley   PetscCall(ISGetLocalSize(dimIS, &numPoints));
1954accc9626SMatthew G. Knepley   PetscCall(ISGetIndices(dimIS, &points));
1955accc9626SMatthew G. Knepley   for (p = 0; p < numPoints; ++p) {
1956accc9626SMatthew G. Knepley     const PetscInt  point = points[p];
1957accc9626SMatthew G. Knepley     const PetscInt *support;
1958accc9626SMatthew G. Knepley     PetscInt        supportSize, valA, valB;
1959accc9626SMatthew G. Knepley 
1960accc9626SMatthew G. Knepley     PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
1961accc9626SMatthew G. Knepley     if (supportSize != 2) continue;
1962accc9626SMatthew G. Knepley     PetscCall(DMPlexGetSupport(dm, point, &support));
1963accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, support[0], &valA));
1964accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, support[1], &valB));
1965accc9626SMatthew G. Knepley     if ((valA == -1) || (valB == -1)) continue;
1966accc9626SMatthew G. Knepley     if (valA * valB > 0) continue;
1967e1a13daeSMatthew G. Knepley     /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */
1968e1a13daeSMatthew G. Knepley     {
1969e1a13daeSMatthew G. Knepley       PetscInt *closure = NULL;
1970e1a13daeSMatthew G. Knepley       PetscBool split   = PETSC_FALSE;
1971e1a13daeSMatthew G. Knepley       PetscInt  closureSize, cl;
1972e1a13daeSMatthew G. Knepley 
1973e1a13daeSMatthew G. Knepley       PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1974e1a13daeSMatthew G. Knepley       for (cl = 0; cl < closureSize * 2; cl += 2) {
1975e1a13daeSMatthew G. Knepley         PetscCall(DMLabelGetValue(label, closure[cl], &valA));
19769371c9d4SSatish Balay         if ((valA >= 0) && (valA <= dim)) {
19779371c9d4SSatish Balay           split = PETSC_TRUE;
19789371c9d4SSatish Balay           break;
19799371c9d4SSatish Balay         }
1980e1a13daeSMatthew G. Knepley       }
1981e1a13daeSMatthew G. Knepley       PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1982e1a13daeSMatthew G. Knepley       if (!split) continue;
1983e1a13daeSMatthew G. Knepley     }
1984accc9626SMatthew G. Knepley     /* Split the face */
1985accc9626SMatthew G. Knepley     PetscCall(DMLabelGetValue(label, point, &valA));
1986accc9626SMatthew G. Knepley     PetscCall(DMLabelClearValue(label, point, valA));
1987accc9626SMatthew G. Knepley     PetscCall(DMLabelSetValue(label, point, dim - 1));
1988accc9626SMatthew G. Knepley     /* Label its closure:
1989accc9626SMatthew G. Knepley       unmarked: label as unsplit
1990accc9626SMatthew G. Knepley       incident: relabel as split
1991accc9626SMatthew G. Knepley       split:    do nothing
1992accc9626SMatthew G. Knepley     */
1993accc9626SMatthew G. Knepley     {
1994accc9626SMatthew G. Knepley       PetscInt *closure = NULL;
1995accc9626SMatthew G. Knepley       PetscInt  closureSize, cl, dep;
1996accc9626SMatthew G. Knepley 
1997accc9626SMatthew G. Knepley       PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
1998accc9626SMatthew G. Knepley       for (cl = 0; cl < closureSize * 2; cl += 2) {
1999accc9626SMatthew G. Knepley         PetscCall(DMLabelGetValue(label, closure[cl], &valA));
2000accc9626SMatthew G. Knepley         if (valA == -1) { /* Mark as unsplit */
2001accc9626SMatthew G. Knepley           PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
2002accc9626SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep));
2003accc9626SMatthew G. Knepley         } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) {
2004accc9626SMatthew G. Knepley           PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep));
2005accc9626SMatthew G. Knepley           PetscCall(DMLabelClearValue(label, closure[cl], valA));
2006accc9626SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, closure[cl], dep));
2007accc9626SMatthew G. Knepley         }
2008accc9626SMatthew G. Knepley       }
2009accc9626SMatthew G. Knepley       PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2010accc9626SMatthew G. Knepley     }
2011accc9626SMatthew G. Knepley   }
2012accc9626SMatthew G. Knepley   PetscCall(ISRestoreIndices(dimIS, &points));
2013accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&dimIS));
20143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2015accc9626SMatthew G. Knepley }
2016accc9626SMatthew G. Knepley 
2017cd0c2139SMatthew G Knepley /*@
20180f66a230SMatthew G. Knepley   DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces
2019cd0c2139SMatthew G Knepley   to complete the surface
2020cd0c2139SMatthew G Knepley 
2021cd0c2139SMatthew G Knepley   Input Parameters:
2022cd0c2139SMatthew G Knepley + dm     - The DM
20230f66a230SMatthew G. Knepley . label  - A DMLabel marking the surface
20240f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically
2025caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary
2026bb55d314SMatthew G. Knepley . flip   - Flag to flip the submesh normal and replace points on the other side
202747946fd8SMatthew G. Knepley - subdm  - The subDM associated with the label, or NULL
2028cd0c2139SMatthew G Knepley 
2029cd0c2139SMatthew G Knepley   Output Parameter:
2030cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points
2031cd0c2139SMatthew G Knepley 
20320f66a230SMatthew G. Knepley   Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation.
20330f66a230SMatthew G. Knepley 
2034cd0c2139SMatthew G Knepley   Level: developer
2035cd0c2139SMatthew G Knepley 
2036db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()`
2037cd0c2139SMatthew G Knepley @*/
2038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm)
2039d71ae5a4SJacob Faibussowitsch {
2040d90583fdSMatthew G. Knepley   DMLabel         depthLabel;
2041accc9626SMatthew G. Knepley   IS              dimIS, subpointIS = NULL;
204247946fd8SMatthew G. Knepley   const PetscInt *points, *subpoints;
2043bb55d314SMatthew G. Knepley   const PetscInt  rev   = flip ? -1 : 1;
2044accc9626SMatthew G. Knepley   PetscInt        shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val;
2045cd0c2139SMatthew G Knepley 
2046cd0c2139SMatthew G Knepley   PetscFunctionBegin;
20479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
20489566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
20499566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
205047946fd8SMatthew G. Knepley   if (subdm) {
20519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
205247946fd8SMatthew G. Knepley     if (subpointIS) {
20539566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
20549566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subpointIS, &subpoints));
205547946fd8SMatthew G. Knepley     }
205647946fd8SMatthew G. Knepley   }
2057d7c8f101SMatthew G. Knepley   /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */
20589566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS));
2059accc9626SMatthew G. Knepley   if (!dimIS) goto divide;
20609566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(dimIS, &numPoints));
20619566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(dimIS, &points));
2062d7c8f101SMatthew G. Knepley   for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */
2063cd0c2139SMatthew G Knepley     const PetscInt *support;
2064cd0c2139SMatthew G Knepley     PetscInt        supportSize, s;
2065cd0c2139SMatthew G Knepley 
20669566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize));
2067c4419245SMatthew G. Knepley #if 0
2068c4419245SMatthew G. Knepley     if (supportSize != 2) {
2069c4419245SMatthew G. Knepley       const PetscInt *lp;
2070c4419245SMatthew G. Knepley       PetscInt        Nlp, pind;
2071c4419245SMatthew G. Knepley 
2072c4419245SMatthew G. Knepley       /* Check that for a cell with a single support face, that face is in the SF */
2073c4419245SMatthew G. Knepley       /*   THis check only works for the remote side. We would need root side information */
20749566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL));
20759566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(points[p], Nlp, lp, &pind));
207663a3b9bcSJacob Faibussowitsch       PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize);
2077c4419245SMatthew G. Knepley     }
2078c4419245SMatthew G. Knepley #endif
20799566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSupport(dm, points[p], &support));
2080cd0c2139SMatthew G Knepley     for (s = 0; s < supportSize; ++s) {
20810f66a230SMatthew G. Knepley       const PetscInt *cone;
2082cd0c2139SMatthew G Knepley       PetscInt        coneSize, c;
20830f66a230SMatthew G. Knepley       PetscBool       pos;
2084cd0c2139SMatthew G Knepley 
20859566063dSJacob Faibussowitsch       PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos));
20869566063dSJacob Faibussowitsch       if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim)));
20879566063dSJacob Faibussowitsch       else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim)));
20880f66a230SMatthew G. Knepley       if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE;
20890f66a230SMatthew G. Knepley       /* Put faces touching the fault in the label */
20909566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
20919566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, support[s], &cone));
2092cd0c2139SMatthew G Knepley       for (c = 0; c < coneSize; ++c) {
2093cd0c2139SMatthew G Knepley         const PetscInt point = cone[c];
2094cd0c2139SMatthew G Knepley 
20959566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2096cd0c2139SMatthew G Knepley         if (val == -1) {
2097cd0c2139SMatthew G Knepley           PetscInt *closure = NULL;
2098cd0c2139SMatthew G Knepley           PetscInt  closureSize, cl;
2099cd0c2139SMatthew G Knepley 
21009566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2101cd0c2139SMatthew G Knepley           for (cl = 0; cl < closureSize * 2; cl += 2) {
2102cd0c2139SMatthew G Knepley             const PetscInt clp  = closure[cl];
2103a0541d8aSMatthew G. Knepley             PetscInt       bval = -1;
2104cd0c2139SMatthew G Knepley 
21059566063dSJacob Faibussowitsch             PetscCall(DMLabelGetValue(label, clp, &val));
21069566063dSJacob Faibussowitsch             if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval));
2107a0541d8aSMatthew G. Knepley             if ((val >= 0) && (val < dim - 1) && (bval < 0)) {
21089566063dSJacob Faibussowitsch               PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1)));
2109cd0c2139SMatthew G Knepley               break;
2110cd0c2139SMatthew G Knepley             }
2111cd0c2139SMatthew G Knepley           }
21129566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2113cd0c2139SMatthew G Knepley         }
2114cd0c2139SMatthew G Knepley       }
2115cd0c2139SMatthew G Knepley     }
2116cd0c2139SMatthew G Knepley   }
2117accc9626SMatthew G. Knepley   PetscCall(ISRestoreIndices(dimIS, &points));
2118accc9626SMatthew G. Knepley   PetscCall(ISDestroy(&dimIS));
2119a0541d8aSMatthew G. Knepley   /* Mark boundary points as unsplit */
212086200784SMatthew G. Knepley   if (blabel) {
2121accc9626SMatthew G. Knepley     IS bdIS;
2122accc9626SMatthew G. Knepley 
2123caf9e14dSMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS));
2124accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(bdIS, &numPoints));
2125accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(bdIS, &points));
2126a0541d8aSMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2127a0541d8aSMatthew G. Knepley       const PetscInt point = points[p];
2128a0541d8aSMatthew G. Knepley       PetscInt       val, bval;
2129a0541d8aSMatthew G. Knepley 
21309566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(blabel, point, &bval));
2131a0541d8aSMatthew G. Knepley       if (bval >= 0) {
21329566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2133f7019248SMatthew G. Knepley         if ((val < 0) || (val > dim)) {
2134f7019248SMatthew G. Knepley           /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */
21359566063dSJacob Faibussowitsch           PetscCall(DMLabelClearValue(blabel, point, bval));
2136f7019248SMatthew G. Knepley         }
2137f7019248SMatthew G. Knepley       }
2138f7019248SMatthew G. Knepley     }
2139f7019248SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
2140f7019248SMatthew G. Knepley       const PetscInt point = points[p];
2141f7019248SMatthew G. Knepley       PetscInt       val, bval;
2142f7019248SMatthew G. Knepley 
21439566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(blabel, point, &bval));
2144f7019248SMatthew G. Knepley       if (bval >= 0) {
214586200784SMatthew G. Knepley         const PetscInt *cone, *support;
214686200784SMatthew G. Knepley         PetscInt        coneSize, supportSize, s, valA, valB, valE;
214786200784SMatthew G. Knepley 
2148a0541d8aSMatthew G. Knepley         /* Mark as unsplit */
21499566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(label, point, &val));
2150e1a13daeSMatthew G. Knepley         PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val);
21519566063dSJacob Faibussowitsch         PetscCall(DMLabelClearValue(label, point, val));
21529566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(label, point, shift2 + val));
21532c06a818SMatthew G. Knepley         /* Check for cross-edge
21542c06a818SMatthew G. Knepley              A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */
215586200784SMatthew G. Knepley         if (val != 0) continue;
21569566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
21579566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
215886200784SMatthew G. Knepley         for (s = 0; s < supportSize; ++s) {
21599566063dSJacob Faibussowitsch           PetscCall(DMPlexGetCone(dm, support[s], &cone));
21609566063dSJacob Faibussowitsch           PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize));
216163a3b9bcSJacob Faibussowitsch           PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize);
21629566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, cone[0], &valA));
21639566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, cone[1], &valB));
21649566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(blabel, support[s], &valE));
21659566063dSJacob Faibussowitsch           if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2));
216686200784SMatthew G. Knepley         }
2167a0541d8aSMatthew G. Knepley       }
2168a0541d8aSMatthew G. Knepley     }
2169accc9626SMatthew G. Knepley     PetscCall(ISRestoreIndices(bdIS, &points));
2170accc9626SMatthew G. Knepley     PetscCall(ISDestroy(&bdIS));
2171a0541d8aSMatthew G. Knepley   }
2172b6dfa339SMatthew G. Knepley   /* Mark ghost fault cells */
2173b6dfa339SMatthew G. Knepley   {
2174b6dfa339SMatthew G. Knepley     PetscSF         sf;
2175b6dfa339SMatthew G. Knepley     const PetscInt *leaves;
2176b6dfa339SMatthew G. Knepley     PetscInt        Nl, l;
2177b6dfa339SMatthew G. Knepley 
2178b6dfa339SMatthew G. Knepley     PetscCall(DMGetPointSF(dm, &sf));
2179b6dfa339SMatthew G. Knepley     PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL));
2180accc9626SMatthew G. Knepley     PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS));
2181accc9626SMatthew G. Knepley     if (!dimIS) goto divide;
2182accc9626SMatthew G. Knepley     PetscCall(ISGetLocalSize(dimIS, &numPoints));
2183accc9626SMatthew G. Knepley     PetscCall(ISGetIndices(dimIS, &points));
2184b6dfa339SMatthew G. Knepley     if (Nl > 0) {
2185b6dfa339SMatthew G. Knepley       for (p = 0; p < numPoints; ++p) {
2186b6dfa339SMatthew G. Knepley         const PetscInt point = points[p];
2187b6dfa339SMatthew G. Knepley         PetscInt       val;
2188b6dfa339SMatthew G. Knepley 
2189b6dfa339SMatthew G. Knepley         PetscCall(PetscFindInt(point, Nl, leaves, &l));
2190b6dfa339SMatthew G. Knepley         if (l >= 0) {
2191b6dfa339SMatthew G. Knepley           PetscInt *closure = NULL;
2192b6dfa339SMatthew G. Knepley           PetscInt  closureSize, cl;
2193b6dfa339SMatthew G. Knepley 
2194b6dfa339SMatthew G. Knepley           PetscCall(DMLabelGetValue(label, point, &val));
2195b6dfa339SMatthew G. Knepley           PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val);
2196b6dfa339SMatthew G. Knepley           PetscCall(DMLabelClearValue(label, point, val));
2197b6dfa339SMatthew G. Knepley           PetscCall(DMLabelSetValue(label, point, shift3 + val));
2198b6dfa339SMatthew G. Knepley           PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2199accc9626SMatthew G. Knepley           for (cl = 2; cl < closureSize * 2; cl += 2) {
2200b6dfa339SMatthew G. Knepley             const PetscInt clp = closure[cl];
2201b6dfa339SMatthew G. Knepley 
2202b6dfa339SMatthew G. Knepley             PetscCall(DMLabelGetValue(label, clp, &val));
2203b6dfa339SMatthew G. Knepley             PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point);
2204b6dfa339SMatthew G. Knepley             PetscCall(DMLabelClearValue(label, clp, val));
2205b6dfa339SMatthew G. Knepley             PetscCall(DMLabelSetValue(label, clp, shift3 + val));
2206b6dfa339SMatthew G. Knepley           }
2207b6dfa339SMatthew G. Knepley           PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure));
2208b6dfa339SMatthew G. Knepley         }
2209b6dfa339SMatthew G. Knepley       }
2210b6dfa339SMatthew G. Knepley     }
2211b6dfa339SMatthew G. Knepley     PetscCall(ISRestoreIndices(dimIS, &points));
2212b6dfa339SMatthew G. Knepley     PetscCall(ISDestroy(&dimIS));
2213accc9626SMatthew G. Knepley   }
2214accc9626SMatthew G. Knepley divide:
2215b6dfa339SMatthew G. Knepley   if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints));
2216accc9626SMatthew G. Knepley   PetscCall(DMPlexLabelFaultHalo(dm, label));
2217accc9626SMatthew G. Knepley   PetscCall(CheckFaultEdge_Private(dm, label));
22183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2219cd0c2139SMatthew G Knepley }
2220cd0c2139SMatthew G Knepley 
2221720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */
2222d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm)
2223d71ae5a4SJacob Faibussowitsch {
2224720e594eSMatthew G. Knepley   IS              subpointIS;
2225720e594eSMatthew G. Knepley   const PetscInt *dmpoints;
2226720e594eSMatthew G. Knepley   PetscInt        defaultValue, cStart, cEnd, c, vStart, vEnd;
2227720e594eSMatthew G. Knepley 
2228720e594eSMatthew G. Knepley   PetscFunctionBegin;
22293ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
22309566063dSJacob Faibussowitsch   PetscCall(DMLabelGetDefaultValue(label, &defaultValue));
22319566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS));
22323ba16761SJacob Faibussowitsch   if (!subpointIS) PetscFunctionReturn(PETSC_SUCCESS);
22339566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd));
22349566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
22359566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(subpointIS, &dmpoints));
2236720e594eSMatthew G. Knepley   for (c = cStart; c < cEnd; ++c) {
2237720e594eSMatthew G. Knepley     PetscBool invalidCell = PETSC_TRUE;
2238720e594eSMatthew G. Knepley     PetscInt *closure     = NULL;
2239720e594eSMatthew G. Knepley     PetscInt  closureSize, cl;
2240720e594eSMatthew G. Knepley 
22419566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2242720e594eSMatthew G. Knepley     for (cl = 0; cl < closureSize * 2; cl += 2) {
2243720e594eSMatthew G. Knepley       PetscInt value = 0;
2244720e594eSMatthew G. Knepley 
2245720e594eSMatthew G. Knepley       if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue;
22469566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, closure[cl], &value));
22479371c9d4SSatish Balay       if (value == defaultValue) {
22489371c9d4SSatish Balay         invalidCell = PETSC_FALSE;
22499371c9d4SSatish Balay         break;
22509371c9d4SSatish Balay       }
2251720e594eSMatthew G. Knepley     }
22529566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure));
2253720e594eSMatthew G. Knepley     if (invalidCell) {
22549566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
22559566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&subpointIS));
22569566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&subdm));
225763a3b9bcSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]);
2258720e594eSMatthew G. Knepley     }
2259720e594eSMatthew G. Knepley   }
22609566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(subpointIS, &dmpoints));
22613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2262720e594eSMatthew G. Knepley }
2263720e594eSMatthew G. Knepley 
2264c08575a3SMatthew G. Knepley /*@
22653cf72582SMatthew G. Knepley   DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface
22663cf72582SMatthew G. Knepley 
22673cf72582SMatthew G. Knepley   Collective on dm
22683cf72582SMatthew G. Knepley 
22693cf72582SMatthew G. Knepley   Input Parameters:
22703cf72582SMatthew G. Knepley + dm - The original DM
2271720e594eSMatthew G. Knepley . label - The label specifying the interface vertices
2272caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices
2273caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices
22743cf72582SMatthew G. Knepley 
22753cf72582SMatthew G. Knepley   Output Parameters:
22767db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired
22777db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired
2278720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL
2279720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells
22803cf72582SMatthew G. Knepley 
228140cdb708SMatthew Knepley   Note: The hybridLabel indicates what parts of the original mesh impinged on the division surface. For points
22826eccb800SMatthew Knepley   directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be
22836eccb800SMatthew Knepley   7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with
22846eccb800SMatthew Knepley   one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the
22856eccb800SMatthew Knepley   surface also hits vertex 3, it would be 9 (-101) in hybridLabel.
22866eccb800SMatthew Knepley 
22876eccb800SMatthew Knepley   The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original
228840cdb708SMatthew Knepley   mesh. The label value is $\pm 100+dim$ for each point. For example, if two edges 10 and 14 in the hybrid resulting from
22896eccb800SMatthew Knepley   splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel.
22906eccb800SMatthew Knepley 
22916eccb800SMatthew Knepley   The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using
22926eccb800SMatthew Knepley   DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh.
22936eccb800SMatthew Knepley 
22943cf72582SMatthew G. Knepley   Level: developer
22953cf72582SMatthew G. Knepley 
2296db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()`
22973cf72582SMatthew G. Knepley @*/
2298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid)
2299d71ae5a4SJacob Faibussowitsch {
23003cf72582SMatthew G. Knepley   DM       idm;
23017db7e0a7SMatthew G. Knepley   DMLabel  subpointMap, hlabel, slabel = NULL;
23023cf72582SMatthew G. Knepley   PetscInt dim;
23033cf72582SMatthew G. Knepley 
23043cf72582SMatthew G. Knepley   PetscFunctionBegin;
23053cf72582SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
230692ef8ba2SVaclav Hapla   if (label) PetscValidPointer(label, 2);
2307720e594eSMatthew G. Knepley   if (bdlabel) PetscValidPointer(bdlabel, 3);
230892ef8ba2SVaclav Hapla   if (hybridLabel) PetscValidPointer(hybridLabel, 5);
230992ef8ba2SVaclav Hapla   if (splitLabel) PetscValidPointer(splitLabel, 6);
231092ef8ba2SVaclav Hapla   if (dmInterface) PetscValidPointer(dmInterface, 7);
231192ef8ba2SVaclav Hapla   PetscValidPointer(dmHybrid, 8);
23129566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
23139566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm));
23149566063dSJacob Faibussowitsch   PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm));
23159566063dSJacob Faibussowitsch   PetscCall(DMPlexOrient(idm));
23169566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(idm, &subpointMap));
23179566063dSJacob Faibussowitsch   PetscCall(DMLabelDuplicate(subpointMap, &hlabel));
23189566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(hlabel, dim));
23197db7e0a7SMatthew G. Knepley   if (splitLabel) {
23207db7e0a7SMatthew G. Knepley     const char *name;
23217db7e0a7SMatthew G. Knepley     char        sname[PETSC_MAX_PATH_LEN];
23227db7e0a7SMatthew G. Knepley 
23239566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)hlabel, &name));
2324*c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(sname, name, sizeof(sname)));
2325*c6a7a370SJeremy L Thompson     PetscCall(PetscStrlcat(sname, " split", sizeof(sname)));
23269566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel));
23277db7e0a7SMatthew G. Knepley   }
2328caf9e14dSMatthew G. Knepley   PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm));
23299371c9d4SSatish Balay   if (dmInterface) {
23309371c9d4SSatish Balay     *dmInterface = idm;
23319371c9d4SSatish Balay   } else PetscCall(DMDestroy(&idm));
23329566063dSJacob Faibussowitsch   PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid));
23335de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid));
23343cf72582SMatthew G. Knepley   if (hybridLabel) *hybridLabel = hlabel;
23359566063dSJacob Faibussowitsch   else PetscCall(DMLabelDestroy(&hlabel));
23367db7e0a7SMatthew G. Knepley   if (splitLabel) *splitLabel = slabel;
23374a7ee7d0SMatthew G. Knepley   {
23384a7ee7d0SMatthew G. Knepley     DM      cdm;
23394a7ee7d0SMatthew G. Knepley     DMLabel ctLabel;
23404a7ee7d0SMatthew G. Knepley 
23414a7ee7d0SMatthew G. Knepley     /* We need to somehow share the celltype label with the coordinate dm */
23429566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm));
23439566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel));
23449566063dSJacob Faibussowitsch     PetscCall(DMSetLabel(cdm, ctLabel));
23454a7ee7d0SMatthew G. Knepley   }
23463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2347cd0c2139SMatthew G Knepley }
2348cd0c2139SMatthew G Knepley 
2349efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that:
2350efa14ee0SMatthew G Knepley 
2351efa14ee0SMatthew G Knepley      For any marked cell, the marked vertices constitute a single face
2352efa14ee0SMatthew G Knepley */
2353d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm)
2354d71ae5a4SJacob Faibussowitsch {
2355fed694aaSMatthew G. Knepley   IS              subvertexIS = NULL;
2356efa14ee0SMatthew G Knepley   const PetscInt *subvertices;
2357412e9a14SMatthew G. Knepley   PetscInt       *pStart, *pEnd, pSize;
2358efa14ee0SMatthew G Knepley   PetscInt        depth, dim, d, numSubVerticesInitial = 0, v;
2359efa14ee0SMatthew G Knepley 
2360efa14ee0SMatthew G Knepley   PetscFunctionBegin;
2361efa14ee0SMatthew G Knepley   *numFaces = 0;
2362efa14ee0SMatthew G Knepley   *nFV      = 0;
23639566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
23649566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
236577d178adSMatthew G. Knepley   pSize = PetscMax(depth, dim) + 1;
23669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd));
236748a46eb9SPierre Jolivet   for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d]));
2368efa14ee0SMatthew G Knepley   /* Loop over initial vertices and mark all faces in the collective star() */
23699566063dSJacob Faibussowitsch   if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2370efa14ee0SMatthew G Knepley   if (subvertexIS) {
23719566063dSJacob Faibussowitsch     PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
23729566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subvertexIS, &subvertices));
2373efa14ee0SMatthew G Knepley   }
2374efa14ee0SMatthew G Knepley   for (v = 0; v < numSubVerticesInitial; ++v) {
2375efa14ee0SMatthew G Knepley     const PetscInt vertex = subvertices[v];
23760298fd71SBarry Smith     PetscInt      *star   = NULL;
2377efa14ee0SMatthew G Knepley     PetscInt       starSize, s, numCells = 0, c;
2378efa14ee0SMatthew G Knepley 
23799566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2380efa14ee0SMatthew G Knepley     for (s = 0; s < starSize * 2; s += 2) {
2381efa14ee0SMatthew G Knepley       const PetscInt point = star[s];
2382efa14ee0SMatthew G Knepley       if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point;
2383efa14ee0SMatthew G Knepley     }
2384efa14ee0SMatthew G Knepley     for (c = 0; c < numCells; ++c) {
2385efa14ee0SMatthew G Knepley       const PetscInt cell    = star[c];
23860298fd71SBarry Smith       PetscInt      *closure = NULL;
2387efa14ee0SMatthew G Knepley       PetscInt       closureSize, cl;
2388efa14ee0SMatthew G Knepley       PetscInt       cellLoc, numCorners = 0, faceSize = 0;
2389efa14ee0SMatthew G Knepley 
23909566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc));
239165560c7fSMatthew G Knepley       if (cellLoc == 2) continue;
239263a3b9bcSJacob Faibussowitsch       PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc);
23939566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2394efa14ee0SMatthew G Knepley       for (cl = 0; cl < closureSize * 2; cl += 2) {
2395efa14ee0SMatthew G Knepley         const PetscInt point = closure[cl];
2396efa14ee0SMatthew G Knepley         PetscInt       vertexLoc;
2397efa14ee0SMatthew G Knepley 
2398efa14ee0SMatthew G Knepley         if ((point >= pStart[0]) && (point < pEnd[0])) {
2399efa14ee0SMatthew G Knepley           ++numCorners;
24009566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2401830e53efSMatthew G. Knepley           if (vertexLoc == value) closure[faceSize++] = point;
2402efa14ee0SMatthew G Knepley         }
2403efa14ee0SMatthew G Knepley       }
24049566063dSJacob Faibussowitsch       if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV));
240563a3b9bcSJacob Faibussowitsch       PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
2406efa14ee0SMatthew G Knepley       if (faceSize == *nFV) {
2407007baee2SMatthew G. Knepley         const PetscInt *cells = NULL;
2408007baee2SMatthew G. Knepley         PetscInt        numCells, nc;
2409007baee2SMatthew G. Knepley 
2410efa14ee0SMatthew G Knepley         ++(*numFaces);
241148a46eb9SPierre Jolivet         for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0));
24129566063dSJacob Faibussowitsch         PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells));
241348a46eb9SPierre Jolivet         for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2));
24149566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells));
2415efa14ee0SMatthew G Knepley       }
24169566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
2417efa14ee0SMatthew G Knepley     }
24189566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2419efa14ee0SMatthew G Knepley   }
242048a46eb9SPierre Jolivet   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
24219566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
24229566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
24233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2424efa14ee0SMatthew G Knepley }
2425efa14ee0SMatthew G Knepley 
2426d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm)
2427d71ae5a4SJacob Faibussowitsch {
242834b4c39eSMatthew G. Knepley   IS              subvertexIS = NULL;
2429efa14ee0SMatthew G Knepley   const PetscInt *subvertices;
2430412e9a14SMatthew G. Knepley   PetscInt       *pStart, *pEnd;
2431efa14ee0SMatthew G Knepley   PetscInt        dim, d, numSubVerticesInitial = 0, v;
2432efa14ee0SMatthew G Knepley 
2433efa14ee0SMatthew G Knepley   PetscFunctionBegin;
24349566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
24359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd));
243648a46eb9SPierre Jolivet   for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d]));
2437efa14ee0SMatthew G Knepley   /* Loop over initial vertices and mark all faces in the collective star() */
243834b4c39eSMatthew G. Knepley   if (vertexLabel) {
24399566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS));
2440efa14ee0SMatthew G Knepley     if (subvertexIS) {
24419566063dSJacob Faibussowitsch       PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial));
24429566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subvertexIS, &subvertices));
2443efa14ee0SMatthew G Knepley     }
244434b4c39eSMatthew G. Knepley   }
2445efa14ee0SMatthew G Knepley   for (v = 0; v < numSubVerticesInitial; ++v) {
2446efa14ee0SMatthew G Knepley     const PetscInt vertex = subvertices[v];
24470298fd71SBarry Smith     PetscInt      *star   = NULL;
2448efa14ee0SMatthew G Knepley     PetscInt       starSize, s, numFaces = 0, f;
2449efa14ee0SMatthew G Knepley 
24509566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2451efa14ee0SMatthew G Knepley     for (s = 0; s < starSize * 2; s += 2) {
2452efa14ee0SMatthew G Knepley       const PetscInt point = star[s];
2453158acfadSMatthew G. Knepley       PetscInt       faceLoc;
2454158acfadSMatthew G. Knepley 
2455158acfadSMatthew G. Knepley       if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) {
2456158acfadSMatthew G. Knepley         if (markedFaces) {
24579566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc));
2458158acfadSMatthew G. Knepley           if (faceLoc < 0) continue;
2459158acfadSMatthew G. Knepley         }
2460158acfadSMatthew G. Knepley         star[numFaces++] = point;
2461158acfadSMatthew G. Knepley       }
2462efa14ee0SMatthew G Knepley     }
2463efa14ee0SMatthew G Knepley     for (f = 0; f < numFaces; ++f) {
2464efa14ee0SMatthew G Knepley       const PetscInt face    = star[f];
24650298fd71SBarry Smith       PetscInt      *closure = NULL;
2466efa14ee0SMatthew G Knepley       PetscInt       closureSize, c;
2467efa14ee0SMatthew G Knepley       PetscInt       faceLoc;
2468efa14ee0SMatthew G Knepley 
24699566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc));
2470efa14ee0SMatthew G Knepley       if (faceLoc == dim - 1) continue;
247163a3b9bcSJacob Faibussowitsch       PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc);
24729566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2473efa14ee0SMatthew G Knepley       for (c = 0; c < closureSize * 2; c += 2) {
2474efa14ee0SMatthew G Knepley         const PetscInt point = closure[c];
2475efa14ee0SMatthew G Knepley         PetscInt       vertexLoc;
2476efa14ee0SMatthew G Knepley 
2477efa14ee0SMatthew G Knepley         if ((point >= pStart[0]) && (point < pEnd[0])) {
24789566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc));
2479830e53efSMatthew G. Knepley           if (vertexLoc != value) break;
2480efa14ee0SMatthew G Knepley         }
2481efa14ee0SMatthew G Knepley       }
2482efa14ee0SMatthew G Knepley       if (c == closureSize * 2) {
2483efa14ee0SMatthew G Knepley         const PetscInt *support;
2484efa14ee0SMatthew G Knepley         PetscInt        supportSize, s;
2485efa14ee0SMatthew G Knepley 
2486efa14ee0SMatthew G Knepley         for (c = 0; c < closureSize * 2; c += 2) {
2487efa14ee0SMatthew G Knepley           const PetscInt point = closure[c];
2488efa14ee0SMatthew G Knepley 
2489efa14ee0SMatthew G Knepley           for (d = 0; d < dim; ++d) {
2490efa14ee0SMatthew G Knepley             if ((point >= pStart[d]) && (point < pEnd[d])) {
24919566063dSJacob Faibussowitsch               PetscCall(DMLabelSetValue(subpointMap, point, d));
2492efa14ee0SMatthew G Knepley               break;
2493efa14ee0SMatthew G Knepley             }
2494efa14ee0SMatthew G Knepley           }
2495efa14ee0SMatthew G Knepley         }
24969566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, face, &supportSize));
24979566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, face, &support));
249848a46eb9SPierre Jolivet         for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2499efa14ee0SMatthew G Knepley       }
25009566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure));
2501efa14ee0SMatthew G Knepley     }
25029566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star));
2503efa14ee0SMatthew G Knepley   }
25049566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices));
25059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
25069566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
25073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2508efa14ee0SMatthew G Knepley }
2509efa14ee0SMatthew G Knepley 
2510d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm)
2511d71ae5a4SJacob Faibussowitsch {
251227c04023SMatthew G. Knepley   DMLabel         label = NULL;
2513766ab985SMatthew G. Knepley   const PetscInt *cone;
25149fc93327SToby Isaac   PetscInt        dim, cMax, cEnd, c, subc = 0, p, coneSize = -1;
2515766ab985SMatthew G. Knepley 
2516812bfc34SJed Brown   PetscFunctionBegin;
2517c0ed958bSJed Brown   *numFaces = 0;
2518c0ed958bSJed Brown   *nFV      = 0;
25199566063dSJacob Faibussowitsch   if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
2520fed694aaSMatthew G. Knepley   *subCells = NULL;
25219566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
25229566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
25233ba16761SJacob Faibussowitsch   if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS);
252427c04023SMatthew G. Knepley   if (label) {
252527c04023SMatthew G. Knepley     for (c = cMax; c < cEnd; ++c) {
252627c04023SMatthew G. Knepley       PetscInt val;
252727c04023SMatthew G. Knepley 
25289566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
252927c04023SMatthew G. Knepley       if (val == value) {
253027c04023SMatthew G. Knepley         ++(*numFaces);
25319566063dSJacob Faibussowitsch         PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
253227c04023SMatthew G. Knepley       }
253327c04023SMatthew G. Knepley     }
253427c04023SMatthew G. Knepley   } else {
2535766ab985SMatthew G. Knepley     *numFaces = cEnd - cMax;
25369566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize));
253727c04023SMatthew G. Knepley   }
25389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(*numFaces * 2, subCells));
25393ba16761SJacob Faibussowitsch   if (!(*numFaces)) PetscFunctionReturn(PETSC_SUCCESS);
25409fc93327SToby Isaac   *nFV = hasLagrange ? coneSize / 3 : coneSize / 2;
2541766ab985SMatthew G. Knepley   for (c = cMax; c < cEnd; ++c) {
2542766ab985SMatthew G. Knepley     const PetscInt *cells;
2543766ab985SMatthew G. Knepley     PetscInt        numCells;
2544766ab985SMatthew G. Knepley 
254527c04023SMatthew G. Knepley     if (label) {
254627c04023SMatthew G. Knepley       PetscInt val;
254727c04023SMatthew G. Knepley 
25489566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
254927c04023SMatthew G. Knepley       if (val != value) continue;
255027c04023SMatthew G. Knepley     }
25519566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, c, &cone));
255248a46eb9SPierre Jolivet     for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0));
2553766ab985SMatthew G. Knepley     /* Negative face */
25549566063dSJacob Faibussowitsch     PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells));
255527234c99SMatthew G. Knepley     /* Not true in parallel
255608401ef6SPierre Jolivet     PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
2557766ab985SMatthew G. Knepley     for (p = 0; p < numCells; ++p) {
25589566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(subpointMap, cells[p], 2));
255927234c99SMatthew G. Knepley       (*subCells)[subc++] = cells[p];
2560766ab985SMatthew G. Knepley     }
25619566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells));
2562766ab985SMatthew G. Knepley     /* Positive face is not included */
2563766ab985SMatthew G. Knepley   }
25643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2565766ab985SMatthew G. Knepley }
2566766ab985SMatthew G. Knepley 
2567d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm)
2568d71ae5a4SJacob Faibussowitsch {
2569766ab985SMatthew G. Knepley   PetscInt *pStart, *pEnd;
2570766ab985SMatthew G. Knepley   PetscInt  dim, cMax, cEnd, c, d;
2571766ab985SMatthew G. Knepley 
2572812bfc34SJed Brown   PetscFunctionBegin;
25739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
25749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd));
25753ba16761SJacob Faibussowitsch   if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS);
25769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd));
25779566063dSJacob Faibussowitsch   for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]));
2578766ab985SMatthew G. Knepley   for (c = cMax; c < cEnd; ++c) {
2579766ab985SMatthew G. Knepley     const PetscInt *cone;
2580766ab985SMatthew G. Knepley     PetscInt       *closure = NULL;
2581b3154360SMatthew G. Knepley     PetscInt        fconeSize, coneSize, closureSize, cl, val;
2582766ab985SMatthew G. Knepley 
258327c04023SMatthew G. Knepley     if (label) {
25849566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, c, &val));
258527c04023SMatthew G. Knepley       if (val != value) continue;
258627c04023SMatthew G. Knepley     }
25879566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, c, &coneSize));
25889566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, c, &cone));
25899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize));
25901dca8a05SBarry Smith     PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells");
2591b3154360SMatthew G. Knepley     /* Negative face */
25929566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2593766ab985SMatthew G. Knepley     for (cl = 0; cl < closureSize * 2; cl += 2) {
2594766ab985SMatthew G. Knepley       const PetscInt point = closure[cl];
2595766ab985SMatthew G. Knepley 
2596766ab985SMatthew G. Knepley       for (d = 0; d <= dim; ++d) {
2597766ab985SMatthew G. Knepley         if ((point >= pStart[d]) && (point < pEnd[d])) {
25989566063dSJacob Faibussowitsch           PetscCall(DMLabelSetValue(subpointMap, point, d));
2599766ab985SMatthew G. Knepley           break;
2600766ab985SMatthew G. Knepley         }
2601766ab985SMatthew G. Knepley       }
2602766ab985SMatthew G. Knepley     }
26039566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure));
2604766ab985SMatthew G. Knepley     /* Cells -- positive face is not included */
2605766ab985SMatthew G. Knepley     for (cl = 0; cl < 1; ++cl) {
2606766ab985SMatthew G. Knepley       const PetscInt *support;
2607766ab985SMatthew G. Knepley       PetscInt        supportSize, s;
2608766ab985SMatthew G. Knepley 
26099566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize));
261008401ef6SPierre Jolivet       /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */
26119566063dSJacob Faibussowitsch       PetscCall(DMPlexGetSupport(dm, cone[cl], &support));
261248a46eb9SPierre Jolivet       for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim));
2613766ab985SMatthew G. Knepley     }
2614766ab985SMatthew G. Knepley   }
26159566063dSJacob Faibussowitsch   PetscCall(PetscFree2(pStart, pEnd));
26163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2617766ab985SMatthew G. Knepley }
2618766ab985SMatthew G. Knepley 
2619d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
2620d71ae5a4SJacob Faibussowitsch {
262182f516ccSBarry Smith   MPI_Comm       comm;
2622e6ccafaeSMatthew G Knepley   PetscBool      posOrient = PETSC_FALSE;
2623e6ccafaeSMatthew G Knepley   const PetscInt debug     = 0;
2624e6ccafaeSMatthew G Knepley   PetscInt       cellDim, faceSize, f;
2625e6ccafaeSMatthew G Knepley 
262682f516ccSBarry Smith   PetscFunctionBegin;
26279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
26289566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &cellDim));
262963a3b9bcSJacob Faibussowitsch   if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners));
2630e6ccafaeSMatthew G Knepley 
2631ddeab2a6SMatthew G. Knepley   if (cellDim == 1 && numCorners == 2) {
2632ddeab2a6SMatthew G. Knepley     /* Triangle */
2633e6ccafaeSMatthew G Knepley     faceSize  = numCorners - 1;
2634e6ccafaeSMatthew G Knepley     posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2635ddeab2a6SMatthew G. Knepley   } else if (cellDim == 2 && numCorners == 3) {
2636ddeab2a6SMatthew G. Knepley     /* Triangle */
2637ddeab2a6SMatthew G. Knepley     faceSize  = numCorners - 1;
2638ddeab2a6SMatthew G. Knepley     posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2639ddeab2a6SMatthew G. Knepley   } else if (cellDim == 3 && numCorners == 4) {
2640ddeab2a6SMatthew G. Knepley     /* Tetrahedron */
2641ddeab2a6SMatthew G. Knepley     faceSize  = numCorners - 1;
2642ddeab2a6SMatthew G. Knepley     posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE;
2643e6ccafaeSMatthew G Knepley   } else if (cellDim == 1 && numCorners == 3) {
2644e6ccafaeSMatthew G Knepley     /* Quadratic line */
2645e6ccafaeSMatthew G Knepley     faceSize  = 1;
2646e6ccafaeSMatthew G Knepley     posOrient = PETSC_TRUE;
2647e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 4) {
2648e6ccafaeSMatthew G Knepley     /* Quads */
2649e6ccafaeSMatthew G Knepley     faceSize = 2;
2650e6ccafaeSMatthew G Knepley     if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) {
2651e6ccafaeSMatthew G Knepley       posOrient = PETSC_TRUE;
2652e6ccafaeSMatthew G Knepley     } else if ((indices[0] == 3) && (indices[1] == 0)) {
2653e6ccafaeSMatthew G Knepley       posOrient = PETSC_TRUE;
2654e6ccafaeSMatthew G Knepley     } else {
2655e6ccafaeSMatthew G Knepley       if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) {
2656e6ccafaeSMatthew G Knepley         posOrient = PETSC_FALSE;
2657e6ccafaeSMatthew G Knepley       } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge");
2658e6ccafaeSMatthew G Knepley     }
2659e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 6) {
2660e6ccafaeSMatthew G Knepley     /* Quadratic triangle (I hate this) */
2661e6ccafaeSMatthew G Knepley     /* Edges are determined by the first 2 vertices (corners of edges) */
2662e6ccafaeSMatthew G Knepley     const PetscInt faceSizeTri = 3;
2663e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[3], i, iFace;
2664e6ccafaeSMatthew G Knepley     PetscBool      found                    = PETSC_FALSE;
2665e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTriSorted[9] = {
2666e6ccafaeSMatthew G Knepley       0, 3, 4, /* bottom */
2667e6ccafaeSMatthew G Knepley       1, 4, 5, /* right */
2668e6ccafaeSMatthew G Knepley       2, 3, 5, /* left */
2669e6ccafaeSMatthew G Knepley     };
2670e6ccafaeSMatthew G Knepley     PetscInt faceVerticesTri[9] = {
2671e6ccafaeSMatthew G Knepley       0, 3, 4, /* bottom */
2672e6ccafaeSMatthew G Knepley       1, 4, 5, /* right */
2673e6ccafaeSMatthew G Knepley       2, 5, 3, /* left */
2674e6ccafaeSMatthew G Knepley     };
2675e6ccafaeSMatthew G Knepley 
2676e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i];
26779566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeTri, sortedIndices));
2678e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 3; ++iFace) {
2679e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace * faceSizeTri;
2680e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2681e6ccafaeSMatthew G Knepley 
26829371c9d4SSatish Balay       if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) {
2683e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) {
2684e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) {
2685e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesTri[ii + fVertex]) {
2686e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2687e6ccafaeSMatthew G Knepley               break;
2688e6ccafaeSMatthew G Knepley             }
2689e6ccafaeSMatthew G Knepley           }
2690e6ccafaeSMatthew G Knepley         }
2691e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2692e6ccafaeSMatthew G Knepley         break;
2693e6ccafaeSMatthew G Knepley       }
2694e6ccafaeSMatthew G Knepley     }
269528b400f6SJacob Faibussowitsch     PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface");
2696e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
26973ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2698e6ccafaeSMatthew G Knepley   } else if (cellDim == 2 && numCorners == 9) {
2699e6ccafaeSMatthew G Knepley     /* Quadratic quad (I hate this) */
2700e6ccafaeSMatthew G Knepley     /* Edges are determined by the first 2 vertices (corners of edges) */
2701e6ccafaeSMatthew G Knepley     const PetscInt faceSizeQuad = 3;
2702e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[3], i, iFace;
2703e6ccafaeSMatthew G Knepley     PetscBool      found                      = PETSC_FALSE;
2704e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuadSorted[12] = {
2705e6ccafaeSMatthew G Knepley       0, 1, 4, /* bottom */
2706e6ccafaeSMatthew G Knepley       1, 2, 5, /* right */
2707e6ccafaeSMatthew G Knepley       2, 3, 6, /* top */
2708e6ccafaeSMatthew G Knepley       0, 3, 7, /* left */
2709e6ccafaeSMatthew G Knepley     };
2710e6ccafaeSMatthew G Knepley     PetscInt faceVerticesQuad[12] = {
2711e6ccafaeSMatthew G Knepley       0, 1, 4, /* bottom */
2712e6ccafaeSMatthew G Knepley       1, 2, 5, /* right */
2713e6ccafaeSMatthew G Knepley       2, 3, 6, /* top */
2714e6ccafaeSMatthew G Knepley       3, 0, 7, /* left */
2715e6ccafaeSMatthew G Knepley     };
2716e6ccafaeSMatthew G Knepley 
2717e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i];
27189566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeQuad, sortedIndices));
2719e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 4; ++iFace) {
2720e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace * faceSizeQuad;
2721e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2722e6ccafaeSMatthew G Knepley 
27239371c9d4SSatish Balay       if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) {
2724e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) {
2725e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) {
2726e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) {
2727e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2728e6ccafaeSMatthew G Knepley               break;
2729e6ccafaeSMatthew G Knepley             }
2730e6ccafaeSMatthew G Knepley           }
2731e6ccafaeSMatthew G Knepley         }
2732e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2733e6ccafaeSMatthew G Knepley         break;
2734e6ccafaeSMatthew G Knepley       }
2735e6ccafaeSMatthew G Knepley     }
273628b400f6SJacob Faibussowitsch     PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface");
2737e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
27383ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2739e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 8) {
2740e6ccafaeSMatthew G Knepley     /* Hexes
2741e6ccafaeSMatthew G Knepley        A hex is two oriented quads with the normal of the first
2742e6ccafaeSMatthew G Knepley        pointing up at the second.
2743e6ccafaeSMatthew G Knepley 
2744e6ccafaeSMatthew G Knepley           7---6
2745e6ccafaeSMatthew G Knepley          /|  /|
2746e6ccafaeSMatthew G Knepley         4---5 |
2747ddeab2a6SMatthew G. Knepley         | 1-|-2
2748e6ccafaeSMatthew G Knepley         |/  |/
2749ddeab2a6SMatthew G. Knepley         0---3
2750e6ccafaeSMatthew G Knepley 
2751e6ccafaeSMatthew G Knepley         Faces are determined by the first 4 vertices (corners of faces) */
2752e6ccafaeSMatthew G Knepley     const PetscInt faceSizeHex = 4;
2753e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[4], i, iFace;
2754e6ccafaeSMatthew G Knepley     PetscBool      found                     = PETSC_FALSE;
2755e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesHexSorted[24] = {
2756e6ccafaeSMatthew G Knepley       0, 1, 2, 3, /* bottom */
2757e6ccafaeSMatthew G Knepley       4, 5, 6, 7, /* top */
2758ddeab2a6SMatthew G. Knepley       0, 3, 4, 5, /* front */
2759ddeab2a6SMatthew G. Knepley       2, 3, 5, 6, /* right */
2760ddeab2a6SMatthew G. Knepley       1, 2, 6, 7, /* back */
2761ddeab2a6SMatthew G. Knepley       0, 1, 4, 7, /* left */
2762e6ccafaeSMatthew G Knepley     };
2763e6ccafaeSMatthew G Knepley     PetscInt faceVerticesHex[24] = {
2764ddeab2a6SMatthew G. Knepley       1, 2, 3, 0, /* bottom */
2765e6ccafaeSMatthew G Knepley       4, 5, 6, 7, /* top */
2766ddeab2a6SMatthew G. Knepley       0, 3, 5, 4, /* front */
2767ddeab2a6SMatthew G. Knepley       3, 2, 6, 5, /* right */
2768ddeab2a6SMatthew G. Knepley       2, 1, 7, 6, /* back */
2769ddeab2a6SMatthew G. Knepley       1, 0, 4, 7, /* left */
2770e6ccafaeSMatthew G Knepley     };
2771e6ccafaeSMatthew G Knepley 
2772e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i];
27739566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeHex, sortedIndices));
2774e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 6; ++iFace) {
2775e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace * faceSizeHex;
2776e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2777e6ccafaeSMatthew G Knepley 
27789371c9d4SSatish Balay       if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) {
2779e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) {
2780e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) {
2781e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesHex[ii + fVertex]) {
2782e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2783e6ccafaeSMatthew G Knepley               break;
2784e6ccafaeSMatthew G Knepley             }
2785e6ccafaeSMatthew G Knepley           }
2786e6ccafaeSMatthew G Knepley         }
2787e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2788e6ccafaeSMatthew G Knepley         break;
2789e6ccafaeSMatthew G Knepley       }
2790e6ccafaeSMatthew G Knepley     }
279128b400f6SJacob Faibussowitsch     PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
2792e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
27933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2794e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 10) {
2795e6ccafaeSMatthew G Knepley     /* Quadratic tet */
2796e6ccafaeSMatthew G Knepley     /* Faces are determined by the first 3 vertices (corners of faces) */
2797e6ccafaeSMatthew G Knepley     const PetscInt faceSizeTet = 6;
2798e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[6], i, iFace;
2799e6ccafaeSMatthew G Knepley     PetscBool      found                     = PETSC_FALSE;
2800e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesTetSorted[24] = {
2801e6ccafaeSMatthew G Knepley       0, 1, 2, 6, 7, 8, /* bottom */
2802e6ccafaeSMatthew G Knepley       0, 3, 4, 6, 7, 9, /* front */
2803e6ccafaeSMatthew G Knepley       1, 4, 5, 7, 8, 9, /* right */
2804e6ccafaeSMatthew G Knepley       2, 3, 5, 6, 8, 9, /* left */
2805e6ccafaeSMatthew G Knepley     };
2806e6ccafaeSMatthew G Knepley     PetscInt faceVerticesTet[24] = {
2807e6ccafaeSMatthew G Knepley       0, 1, 2, 6, 7, 8, /* bottom */
2808e6ccafaeSMatthew G Knepley       0, 4, 3, 6, 7, 9, /* front */
2809e6ccafaeSMatthew G Knepley       1, 5, 4, 7, 8, 9, /* right */
2810e6ccafaeSMatthew G Knepley       2, 3, 5, 8, 6, 9, /* left */
2811e6ccafaeSMatthew G Knepley     };
2812e6ccafaeSMatthew G Knepley 
2813e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i];
28149566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeTet, sortedIndices));
2815e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 4; ++iFace) {
2816e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace * faceSizeTet;
2817e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2818e6ccafaeSMatthew G Knepley 
28199371c9d4SSatish Balay       if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) {
2820e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) {
2821e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) {
2822e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesTet[ii + fVertex]) {
2823e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2824e6ccafaeSMatthew G Knepley               break;
2825e6ccafaeSMatthew G Knepley             }
2826e6ccafaeSMatthew G Knepley           }
2827e6ccafaeSMatthew G Knepley         }
2828e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2829e6ccafaeSMatthew G Knepley         break;
2830e6ccafaeSMatthew G Knepley       }
2831e6ccafaeSMatthew G Knepley     }
283228b400f6SJacob Faibussowitsch     PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface");
2833e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
28343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2835e6ccafaeSMatthew G Knepley   } else if (cellDim == 3 && numCorners == 27) {
2836e6ccafaeSMatthew G Knepley     /* Quadratic hexes (I hate this)
2837e6ccafaeSMatthew G Knepley        A hex is two oriented quads with the normal of the first
2838e6ccafaeSMatthew G Knepley        pointing up at the second.
2839e6ccafaeSMatthew G Knepley 
2840e6ccafaeSMatthew G Knepley          7---6
2841e6ccafaeSMatthew G Knepley         /|  /|
2842e6ccafaeSMatthew G Knepley        4---5 |
2843e6ccafaeSMatthew G Knepley        | 3-|-2
2844e6ccafaeSMatthew G Knepley        |/  |/
2845e6ccafaeSMatthew G Knepley        0---1
2846e6ccafaeSMatthew G Knepley 
2847e6ccafaeSMatthew G Knepley        Faces are determined by the first 4 vertices (corners of faces) */
2848e6ccafaeSMatthew G Knepley     const PetscInt faceSizeQuadHex = 9;
2849e6ccafaeSMatthew G Knepley     PetscInt       sortedIndices[9], i, iFace;
2850e6ccafaeSMatthew G Knepley     PetscBool      found                         = PETSC_FALSE;
2851e6ccafaeSMatthew G Knepley     PetscInt       faceVerticesQuadHexSorted[54] = {
2852e6ccafaeSMatthew G Knepley       0, 1, 2, 3, 8,  9,  10, 11, 24, /* bottom */
2853e6ccafaeSMatthew G Knepley       4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */
2854e6ccafaeSMatthew G Knepley       0, 1, 4, 5, 8,  12, 16, 17, 22, /* front */
2855e6ccafaeSMatthew G Knepley       1, 2, 5, 6, 9,  13, 17, 18, 21, /* right */
2856e6ccafaeSMatthew G Knepley       2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */
2857e6ccafaeSMatthew G Knepley       0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */
2858e6ccafaeSMatthew G Knepley     };
2859e6ccafaeSMatthew G Knepley     PetscInt faceVerticesQuadHex[54] = {
2860e6ccafaeSMatthew G Knepley       3, 2, 1, 0, 10, 9,  8,  11, 24, /* bottom */
2861e6ccafaeSMatthew G Knepley       4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */
2862e6ccafaeSMatthew G Knepley       0, 1, 5, 4, 8,  17, 12, 16, 22, /* front */
2863e6ccafaeSMatthew G Knepley       1, 2, 6, 5, 9,  18, 13, 17, 21, /* right */
2864e6ccafaeSMatthew G Knepley       2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */
2865e6ccafaeSMatthew G Knepley       3, 0, 4, 7, 11, 16, 15, 19, 20  /* left */
2866e6ccafaeSMatthew G Knepley     };
2867e6ccafaeSMatthew G Knepley 
2868e6ccafaeSMatthew G Knepley     for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i];
28699566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices));
2870e6ccafaeSMatthew G Knepley     for (iFace = 0; iFace < 6; ++iFace) {
2871e6ccafaeSMatthew G Knepley       const PetscInt ii = iFace * faceSizeQuadHex;
2872e6ccafaeSMatthew G Knepley       PetscInt       fVertex, cVertex;
2873e6ccafaeSMatthew G Knepley 
28749371c9d4SSatish Balay       if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) {
2875e6ccafaeSMatthew G Knepley         for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) {
2876e6ccafaeSMatthew G Knepley           for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) {
2877e6ccafaeSMatthew G Knepley             if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) {
2878e6ccafaeSMatthew G Knepley               faceVertices[fVertex] = origVertices[cVertex];
2879e6ccafaeSMatthew G Knepley               break;
2880e6ccafaeSMatthew G Knepley             }
2881e6ccafaeSMatthew G Knepley           }
2882e6ccafaeSMatthew G Knepley         }
2883e6ccafaeSMatthew G Knepley         found = PETSC_TRUE;
2884e6ccafaeSMatthew G Knepley         break;
2885e6ccafaeSMatthew G Knepley       }
2886e6ccafaeSMatthew G Knepley     }
288728b400f6SJacob Faibussowitsch     PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface");
2888e6ccafaeSMatthew G Knepley     if (posOriented) *posOriented = PETSC_TRUE;
28893ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2890e6ccafaeSMatthew G Knepley   } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation().");
2891e6ccafaeSMatthew G Knepley   if (!posOrient) {
28929566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(comm, "  Reversing initial face orientation\n"));
2893e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f];
2894e6ccafaeSMatthew G Knepley   } else {
28959566063dSJacob Faibussowitsch     if (debug) PetscCall(PetscPrintf(comm, "  Keeping initial face orientation\n"));
2896e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f];
2897e6ccafaeSMatthew G Knepley   }
2898e6ccafaeSMatthew G Knepley   if (posOriented) *posOriented = posOrient;
28993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2900e6ccafaeSMatthew G Knepley }
2901e6ccafaeSMatthew G Knepley 
2902c08575a3SMatthew G. Knepley /*@
2903c08575a3SMatthew G. Knepley   DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices,
2904c08575a3SMatthew G. Knepley   in faceVertices. The orientation is such that the face normal points out of the cell
2905c08575a3SMatthew G. Knepley 
2906c08575a3SMatthew G. Knepley   Not collective
2907c08575a3SMatthew G. Knepley 
2908c08575a3SMatthew G. Knepley   Input Parameters:
2909c08575a3SMatthew G. Knepley + dm           - The original mesh
2910c08575a3SMatthew G. Knepley . cell         - The cell mesh point
2911c08575a3SMatthew G. Knepley . faceSize     - The number of vertices on the face
2912c08575a3SMatthew G. Knepley . face         - The face vertices
2913c08575a3SMatthew G. Knepley . numCorners   - The number of vertices on the cell
2914c08575a3SMatthew G. Knepley . indices      - Local numbering of face vertices in cell cone
2915c08575a3SMatthew G. Knepley - origVertices - Original face vertices
2916c08575a3SMatthew G. Knepley 
2917d8d19677SJose E. Roman   Output Parameters:
2918c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented
2919c08575a3SMatthew G. Knepley - posOriented  - PETSC_TRUE if the face was oriented with outward normal
2920c08575a3SMatthew G. Knepley 
2921c08575a3SMatthew G. Knepley   Level: developer
2922c08575a3SMatthew G. Knepley 
2923db781477SPatrick Sanan .seealso: `DMPlexGetCone()`
2924c08575a3SMatthew G. Knepley @*/
2925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented)
2926d71ae5a4SJacob Faibussowitsch {
29270298fd71SBarry Smith   const PetscInt *cone = NULL;
2928e6ccafaeSMatthew G Knepley   PetscInt        coneSize, v, f, v2;
2929e6ccafaeSMatthew G Knepley   PetscInt        oppositeVertex = -1;
2930e6ccafaeSMatthew G Knepley 
2931e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
29329566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(dm, cell, &coneSize));
29339566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCone(dm, cell, &cone));
2934e6ccafaeSMatthew G Knepley   for (v = 0, v2 = 0; v < coneSize; ++v) {
2935e6ccafaeSMatthew G Knepley     PetscBool found = PETSC_FALSE;
2936e6ccafaeSMatthew G Knepley 
2937e6ccafaeSMatthew G Knepley     for (f = 0; f < faceSize; ++f) {
2938e6ccafaeSMatthew G Knepley       if (face[f] == cone[v]) {
29399371c9d4SSatish Balay         found = PETSC_TRUE;
29409371c9d4SSatish Balay         break;
2941e6ccafaeSMatthew G Knepley       }
2942e6ccafaeSMatthew G Knepley     }
2943e6ccafaeSMatthew G Knepley     if (found) {
2944e6ccafaeSMatthew G Knepley       indices[v2]      = v;
2945e6ccafaeSMatthew G Knepley       origVertices[v2] = cone[v];
2946e6ccafaeSMatthew G Knepley       ++v2;
2947e6ccafaeSMatthew G Knepley     } else {
2948e6ccafaeSMatthew G Knepley       oppositeVertex = v;
2949e6ccafaeSMatthew G Knepley     }
2950e6ccafaeSMatthew G Knepley   }
29519566063dSJacob Faibussowitsch   PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented));
29523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2953e6ccafaeSMatthew G Knepley }
2954e6ccafaeSMatthew G Knepley 
2955e6ccafaeSMatthew G Knepley /*
2956cd0c2139SMatthew G Knepley   DMPlexInsertFace_Internal - Puts a face into the mesh
2957e6ccafaeSMatthew G Knepley 
2958e6ccafaeSMatthew G Knepley   Not collective
2959e6ccafaeSMatthew G Knepley 
2960e6ccafaeSMatthew G Knepley   Input Parameters:
2961e6ccafaeSMatthew G Knepley   + dm              - The DMPlex
2962e6ccafaeSMatthew G Knepley   . numFaceVertex   - The number of vertices in the face
2963e6ccafaeSMatthew G Knepley   . faceVertices    - The vertices in the face for dm
2964e6ccafaeSMatthew G Knepley   . subfaceVertices - The vertices in the face for subdm
2965e6ccafaeSMatthew G Knepley   . numCorners      - The number of vertices in the cell
2966e6ccafaeSMatthew G Knepley   . cell            - A cell in dm containing the face
2967e6ccafaeSMatthew G Knepley   . subcell         - A cell in subdm containing the face
2968e6ccafaeSMatthew G Knepley   . firstFace       - First face in the mesh
2969e6ccafaeSMatthew G Knepley   - newFacePoint    - Next face in the mesh
2970e6ccafaeSMatthew G Knepley 
2971e6ccafaeSMatthew G Knepley   Output Parameters:
2972e6ccafaeSMatthew G Knepley   . newFacePoint - Contains next face point number on input, updated on output
2973e6ccafaeSMatthew G Knepley 
2974e6ccafaeSMatthew G Knepley   Level: developer
2975e6ccafaeSMatthew G Knepley */
2976d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint)
2977d71ae5a4SJacob Faibussowitsch {
297882f516ccSBarry Smith   MPI_Comm        comm;
2979e6ccafaeSMatthew G Knepley   DM_Plex        *submesh = (DM_Plex *)subdm->data;
2980e6ccafaeSMatthew G Knepley   const PetscInt *faces;
2981e6ccafaeSMatthew G Knepley   PetscInt        numFaces, coneSize;
2982e6ccafaeSMatthew G Knepley 
2983e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
29849566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
29859566063dSJacob Faibussowitsch   PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize));
298663a3b9bcSJacob Faibussowitsch   PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize);
2987e6ccafaeSMatthew G Knepley #if 0
2988e6ccafaeSMatthew G Knepley   /* Cannot use this because support() has not been constructed yet */
29899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
2990e6ccafaeSMatthew G Knepley #else
2991e6ccafaeSMatthew G Knepley   {
2992e6ccafaeSMatthew G Knepley     PetscInt f;
2993e6ccafaeSMatthew G Knepley 
2994e6ccafaeSMatthew G Knepley     numFaces = 0;
29959566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces));
2996e6ccafaeSMatthew G Knepley     for (f = firstFace; f < *newFacePoint; ++f) {
2997e6ccafaeSMatthew G Knepley       PetscInt dof, off, d;
2998e6ccafaeSMatthew G Knepley 
29999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof));
30009566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off));
3001e6ccafaeSMatthew G Knepley       /* Yes, I know this is quadratic, but I expect the sizes to be <5 */
3002e6ccafaeSMatthew G Knepley       for (d = 0; d < dof; ++d) {
3003e6ccafaeSMatthew G Knepley         const PetscInt p = submesh->cones[off + d];
3004e6ccafaeSMatthew G Knepley         PetscInt       v;
3005e6ccafaeSMatthew G Knepley 
3006e6ccafaeSMatthew G Knepley         for (v = 0; v < numFaceVertices; ++v) {
3007e6ccafaeSMatthew G Knepley           if (subfaceVertices[v] == p) break;
3008e6ccafaeSMatthew G Knepley         }
3009e6ccafaeSMatthew G Knepley         if (v == numFaceVertices) break;
3010e6ccafaeSMatthew G Knepley       }
3011e6ccafaeSMatthew G Knepley       if (d == dof) {
3012e6ccafaeSMatthew G Knepley         numFaces               = 1;
3013e6ccafaeSMatthew G Knepley         ((PetscInt *)faces)[0] = f;
3014e6ccafaeSMatthew G Knepley       }
3015e6ccafaeSMatthew G Knepley     }
3016e6ccafaeSMatthew G Knepley   }
3017e6ccafaeSMatthew G Knepley #endif
301863a3b9bcSJacob Faibussowitsch   PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces);
3019f7d195e4SLawrence Mitchell   if (numFaces == 1) {
3020e6ccafaeSMatthew G Knepley     /* Add the other cell neighbor for this face */
30219566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, faces));
3022e6ccafaeSMatthew G Knepley   } else {
3023e6ccafaeSMatthew G Knepley     PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov;
3024e6ccafaeSMatthew G Knepley     PetscBool posOriented;
3025e6ccafaeSMatthew G Knepley 
30269566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3027e6ccafaeSMatthew G Knepley     origVertices        = &orientedVertices[numFaceVertices];
3028e6ccafaeSMatthew G Knepley     indices             = &orientedVertices[numFaceVertices * 2];
3029e6ccafaeSMatthew G Knepley     orientedSubVertices = &orientedVertices[numFaceVertices * 3];
30309566063dSJacob Faibussowitsch     PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented));
3031e6ccafaeSMatthew G Knepley     /* TODO: I know that routine should return a permutation, not the indices */
3032e6ccafaeSMatthew G Knepley     for (v = 0; v < numFaceVertices; ++v) {
3033e6ccafaeSMatthew G Knepley       const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v];
3034e6ccafaeSMatthew G Knepley       for (ov = 0; ov < numFaceVertices; ++ov) {
3035e6ccafaeSMatthew G Knepley         if (orientedVertices[ov] == vertex) {
3036e6ccafaeSMatthew G Knepley           orientedSubVertices[ov] = subvertex;
3037e6ccafaeSMatthew G Knepley           break;
3038e6ccafaeSMatthew G Knepley         }
3039e6ccafaeSMatthew G Knepley       }
304063a3b9bcSJacob Faibussowitsch       PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex);
3041e6ccafaeSMatthew G Knepley     }
30429566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices));
30439566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint));
30449566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices));
3045e6ccafaeSMatthew G Knepley     ++(*newFacePoint);
3046e6ccafaeSMatthew G Knepley   }
3047ef07cca7SMatthew G. Knepley #if 0
30489566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces));
3049ef07cca7SMatthew G. Knepley #else
30509566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces));
3051ef07cca7SMatthew G. Knepley #endif
30523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3053e6ccafaeSMatthew G Knepley }
3054e6ccafaeSMatthew G Knepley 
3055d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm)
3056d71ae5a4SJacob Faibussowitsch {
305782f516ccSBarry Smith   MPI_Comm        comm;
305853156dfcSMatthew G. Knepley   DMLabel         subpointMap;
3059efa14ee0SMatthew G Knepley   IS              subvertexIS, subcellIS;
3060efa14ee0SMatthew G Knepley   const PetscInt *subVertices, *subCells;
3061efa14ee0SMatthew G Knepley   PetscInt        numSubVertices, firstSubVertex, numSubCells;
3062fed694aaSMatthew G. Knepley   PetscInt       *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0;
3063efa14ee0SMatthew G Knepley   PetscInt        vStart, vEnd, c, f;
3064e6ccafaeSMatthew G Knepley 
3065e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
30669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3067efa14ee0SMatthew G Knepley   /* Create subpointMap which marks the submesh */
30689566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
30699566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
30709566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
30719566063dSJacob Faibussowitsch   if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm));
3072efa14ee0SMatthew G Knepley   /* Setup chart */
30739566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
30749566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
30759566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices));
30769566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3077e6ccafaeSMatthew G Knepley   /* Set cone sizes */
3078e6ccafaeSMatthew G Knepley   firstSubVertex = numSubCells;
3079efa14ee0SMatthew G Knepley   firstSubFace   = numSubCells + numSubVertices;
3080e6ccafaeSMatthew G Knepley   newFacePoint   = firstSubFace;
30819566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
30829566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
30839566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS));
30849566063dSJacob Faibussowitsch   if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells));
308548a46eb9SPierre Jolivet   for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1));
308648a46eb9SPierre Jolivet   for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV));
30879566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3088e6ccafaeSMatthew G Knepley   /* Create face cones */
30899566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
30909566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
30919566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
3092e6ccafaeSMatthew G Knepley   for (c = 0; c < numSubCells; ++c) {
3093e6ccafaeSMatthew G Knepley     const PetscInt cell    = subCells[c];
3094efa14ee0SMatthew G Knepley     const PetscInt subcell = c;
30950298fd71SBarry Smith     PetscInt      *closure = NULL;
3096efa14ee0SMatthew G Knepley     PetscInt       closureSize, cl, numCorners = 0, faceSize = 0;
3097e6ccafaeSMatthew G Knepley 
30989566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3099efa14ee0SMatthew G Knepley     for (cl = 0; cl < closureSize * 2; cl += 2) {
3100efa14ee0SMatthew G Knepley       const PetscInt point = closure[cl];
3101e6ccafaeSMatthew G Knepley       PetscInt       subVertex;
3102e6ccafaeSMatthew G Knepley 
3103efa14ee0SMatthew G Knepley       if ((point >= vStart) && (point < vEnd)) {
3104efa14ee0SMatthew G Knepley         ++numCorners;
31059566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex));
3106efa14ee0SMatthew G Knepley         if (subVertex >= 0) {
3107efa14ee0SMatthew G Knepley           closure[faceSize] = point;
310865560c7fSMatthew G Knepley           subface[faceSize] = firstSubVertex + subVertex;
3109e6ccafaeSMatthew G Knepley           ++faceSize;
3110e6ccafaeSMatthew G Knepley         }
3111e6ccafaeSMatthew G Knepley       }
3112e6ccafaeSMatthew G Knepley     }
311363a3b9bcSJacob Faibussowitsch     PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize);
311448a46eb9SPierre Jolivet     if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint));
31159566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
3116e6ccafaeSMatthew G Knepley   }
31179566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
31189566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
31199566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3120e6ccafaeSMatthew G Knepley   /* Build coordinates */
3121efa14ee0SMatthew G Knepley   {
3122efa14ee0SMatthew G Knepley     PetscSection coordSection, subCoordSection;
3123efa14ee0SMatthew G Knepley     Vec          coordinates, subCoordinates;
3124efa14ee0SMatthew G Knepley     PetscScalar *coords, *subCoords;
3125285d324eSMatthew G. Knepley     PetscInt     numComp, coordSize, v;
312624640c55SToby Isaac     const char  *name;
3127efa14ee0SMatthew G Knepley 
31289566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
31299566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
31309566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
31319566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
31329566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
31339566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
31349566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices));
3135efa14ee0SMatthew G Knepley     for (v = 0; v < numSubVertices; ++v) {
3136efa14ee0SMatthew G Knepley       const PetscInt vertex    = subVertices[v];
3137efa14ee0SMatthew G Knepley       const PetscInt subvertex = firstSubVertex + v;
3138efa14ee0SMatthew G Knepley       PetscInt       dof;
3139efa14ee0SMatthew G Knepley 
31409566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
31419566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
31429566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3143e6ccafaeSMatthew G Knepley     }
31449566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
31459566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
31469566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
31479566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
31489566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
31499566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
31509566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates, VECSTANDARD));
3151830e53efSMatthew G. Knepley     if (coordSize) {
31529566063dSJacob Faibussowitsch       PetscCall(VecGetArray(coordinates, &coords));
31539566063dSJacob Faibussowitsch       PetscCall(VecGetArray(subCoordinates, &subCoords));
3154efa14ee0SMatthew G Knepley       for (v = 0; v < numSubVertices; ++v) {
3155efa14ee0SMatthew G Knepley         const PetscInt vertex    = subVertices[v];
3156efa14ee0SMatthew G Knepley         const PetscInt subvertex = firstSubVertex + v;
3157efa14ee0SMatthew G Knepley         PetscInt       dof, off, sdof, soff, d;
3158e6ccafaeSMatthew G Knepley 
31599566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
31609566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
31619566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
31629566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
316363a3b9bcSJacob Faibussowitsch         PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3164e6ccafaeSMatthew G Knepley         for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
3165e6ccafaeSMatthew G Knepley       }
31669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(coordinates, &coords));
31679566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(subCoordinates, &subCoords));
31683b399e24SMatthew G. Knepley     }
31699566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
31709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3171e6ccafaeSMatthew G Knepley   }
3172efa14ee0SMatthew G Knepley   /* Cleanup */
31739566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
31749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
31759566063dSJacob Faibussowitsch   if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells));
31769566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subcellIS));
31773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3178e6ccafaeSMatthew G Knepley }
3179e6ccafaeSMatthew G Knepley 
3180d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */
3181d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[])
3182d71ae5a4SJacob Faibussowitsch {
31833982b651SMatthew G. Knepley   PetscInt       subPoint;
31843982b651SMatthew G. Knepley   PetscErrorCode ierr;
31853982b651SMatthew G. Knepley 
31869371c9d4SSatish Balay   ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint);
31879371c9d4SSatish Balay   if (ierr) return -1;
31883982b651SMatthew G. Knepley   return subPoint < 0 ? subPoint : firstSubPoint + subPoint;
31893982b651SMatthew G. Knepley }
31903982b651SMatthew G. Knepley 
3191d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */
3192d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[])
3193d71ae5a4SJacob Faibussowitsch {
3194dd05d810SMatthew G. Knepley   PetscInt       subPoint;
3195dd05d810SMatthew G. Knepley   PetscErrorCode ierr;
3196dd05d810SMatthew G. Knepley 
3197dd05d810SMatthew G. Knepley   ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint);
3198dd05d810SMatthew G. Knepley   if (ierr) return -1;
3199dd05d810SMatthew G. Knepley   return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint);
3200dd05d810SMatthew G. Knepley }
3201dd05d810SMatthew G. Knepley 
3202d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm)
3203d71ae5a4SJacob Faibussowitsch {
3204695799ffSMatthew G. Knepley   DMLabel  depthLabel;
3205212103e5SMatthew Knepley   PetscInt Nl, l, d;
3206212103e5SMatthew Knepley 
3207212103e5SMatthew Knepley   PetscFunctionBegin;
3208695799ffSMatthew G. Knepley   // Reset depth label for fast lookup
3209695799ffSMatthew G. Knepley   PetscCall(DMPlexGetDepthLabel(dm, &depthLabel));
3210695799ffSMatthew G. Knepley   PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel));
32119566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
3212212103e5SMatthew Knepley   for (l = 0; l < Nl; ++l) {
3213212103e5SMatthew Knepley     DMLabel         label, newlabel;
3214212103e5SMatthew Knepley     const char     *lname;
3215d56405f8SMatthew G. Knepley     PetscBool       isDepth, isDim, isCelltype, isVTK;
3216212103e5SMatthew Knepley     IS              valueIS;
3217212103e5SMatthew Knepley     const PetscInt *values;
3218212103e5SMatthew Knepley     PetscInt        Nv, v;
3219212103e5SMatthew Knepley 
32209566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &lname));
32219566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "depth", &isDepth));
32229566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "dim", &isDim));
32239566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "celltype", &isCelltype));
32249566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(lname, "vtk", &isVTK));
3225d56405f8SMatthew G. Knepley     if (isDepth || isDim || isCelltype || isVTK) continue;
32269566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(subdm, lname));
32279566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, lname, &label));
32289566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(subdm, lname, &newlabel));
32299566063dSJacob Faibussowitsch     PetscCall(DMLabelGetDefaultValue(label, &v));
32309566063dSJacob Faibussowitsch     PetscCall(DMLabelSetDefaultValue(newlabel, v));
32319566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
32329566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(valueIS, &Nv));
32339566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &values));
3234212103e5SMatthew Knepley     for (v = 0; v < Nv; ++v) {
3235212103e5SMatthew Knepley       IS              pointIS;
3236212103e5SMatthew Knepley       const PetscInt *points;
3237212103e5SMatthew Knepley       PetscInt        Np, p;
3238212103e5SMatthew Knepley 
32399566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS));
32409566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &Np));
32419566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
3242212103e5SMatthew Knepley       for (p = 0; p < Np; ++p) {
3243212103e5SMatthew Knepley         const PetscInt point = points[p];
3244212103e5SMatthew Knepley         PetscInt       subp;
3245212103e5SMatthew Knepley 
32469566063dSJacob Faibussowitsch         PetscCall(DMPlexGetPointDepth(dm, point, &d));
3247212103e5SMatthew Knepley         subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]);
32489566063dSJacob Faibussowitsch         if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v]));
3249212103e5SMatthew Knepley       }
32509566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(pointIS, &points));
32519566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
3252212103e5SMatthew Knepley     }
32539566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &values));
32549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
3255212103e5SMatthew Knepley   }
32563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3257212103e5SMatthew Knepley }
3258212103e5SMatthew Knepley 
3259d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm)
3260d71ae5a4SJacob Faibussowitsch {
326182f516ccSBarry Smith   MPI_Comm         comm;
326253156dfcSMatthew G. Knepley   DMLabel          subpointMap;
3263efa14ee0SMatthew G Knepley   IS              *subpointIS;
3264efa14ee0SMatthew G Knepley   const PetscInt **subpoints;
32653982b651SMatthew G. Knepley   PetscInt        *numSubPoints, *firstSubPoint, *coneNew, *orntNew;
3266dd05d810SMatthew G. Knepley   PetscInt         totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v;
32670d366550SMatthew G. Knepley   PetscMPIInt      rank;
3268e6ccafaeSMatthew G Knepley 
3269e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
32709566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
32719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
3272efa14ee0SMatthew G Knepley   /* Create subpointMap which marks the submesh */
32739566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
32749566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
3275bec263e5SMatthew G. Knepley   if (cellHeight) {
32769566063dSJacob Faibussowitsch     if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm));
32779566063dSJacob Faibussowitsch     else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm));
3278bec263e5SMatthew G. Knepley   } else {
3279bec263e5SMatthew G. Knepley     DMLabel         depth;
3280bec263e5SMatthew G. Knepley     IS              pointIS;
3281bec263e5SMatthew G. Knepley     const PetscInt *points;
3282b85c8bf9SMatthew G. Knepley     PetscInt        numPoints = 0;
3283bec263e5SMatthew G. Knepley 
32849566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthLabel(dm, &depth));
32859566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(label, value, &pointIS));
3286b85c8bf9SMatthew G. Knepley     if (pointIS) {
32879566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(pointIS, &points));
32889566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(pointIS, &numPoints));
3289b85c8bf9SMatthew G. Knepley     }
3290bec263e5SMatthew G. Knepley     for (p = 0; p < numPoints; ++p) {
3291bec263e5SMatthew G. Knepley       PetscInt *closure = NULL;
3292bec263e5SMatthew G. Knepley       PetscInt  closureSize, c, pdim;
3293bec263e5SMatthew G. Knepley 
32949566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3295bec263e5SMatthew G. Knepley       for (c = 0; c < closureSize * 2; c += 2) {
32969566063dSJacob Faibussowitsch         PetscCall(DMLabelGetValue(depth, closure[c], &pdim));
32979566063dSJacob Faibussowitsch         PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim));
3298bec263e5SMatthew G. Knepley       }
32999566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure));
3300bec263e5SMatthew G. Knepley     }
33019566063dSJacob Faibussowitsch     if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points));
33029566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&pointIS));
3303bec263e5SMatthew G. Knepley   }
3304efa14ee0SMatthew G Knepley   /* Setup chart */
33059566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
3306dd05d810SMatthew G. Knepley   PetscCall(DMGetCoordinateDim(dm, &cdim));
33079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints));
3308e6ccafaeSMatthew G Knepley   for (d = 0; d <= dim; ++d) {
33099566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]));
3310e6ccafaeSMatthew G Knepley     totSubPoints += numSubPoints[d];
3311e6ccafaeSMatthew G Knepley   }
3312dd05d810SMatthew G. Knepley   // Determine submesh dimension
3313dd05d810SMatthew G. Knepley   PetscCall(DMGetDimension(subdm, &sdim));
3314dd05d810SMatthew G. Knepley   if (sdim > 0) {
3315dd05d810SMatthew G. Knepley     // Calling function knows what dimension to use, and we include neighboring cells as well
3316dd05d810SMatthew G. Knepley     sdim = dim;
3317dd05d810SMatthew G. Knepley   } else {
3318dd05d810SMatthew G. Knepley     // We reset the subdimension based on what is being selected
3319dd05d810SMatthew G. Knepley     PetscInt lsdim;
3320dd05d810SMatthew G. Knepley     for (lsdim = dim; lsdim >= 0; --lsdim)
3321dd05d810SMatthew G. Knepley       if (numSubPoints[lsdim]) break;
33223ba16761SJacob Faibussowitsch     PetscCallMPI(MPI_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPIU_MAX, comm));
3323dd05d810SMatthew G. Knepley     PetscCall(DMSetDimension(subdm, sdim));
3324dd05d810SMatthew G. Knepley     PetscCall(DMSetCoordinateDim(subdm, cdim));
3325dd05d810SMatthew G. Knepley   }
33269566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, totSubPoints));
33279566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight));
3328e6ccafaeSMatthew G Knepley   /* Set cone sizes */
3329dd05d810SMatthew G. Knepley   firstSubPoint[sdim] = 0;
3330dd05d810SMatthew G. Knepley   firstSubPoint[0]    = firstSubPoint[sdim] + numSubPoints[sdim];
3331dd05d810SMatthew G. Knepley   if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0];
3332dd05d810SMatthew G. Knepley   if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1];
3333dd05d810SMatthew G. Knepley   for (d = 0; d <= sdim; ++d) {
33349566063dSJacob Faibussowitsch     PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]));
33359566063dSJacob Faibussowitsch     if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d]));
3336e6ccafaeSMatthew G Knepley   }
3337412e9a14SMatthew G. Knepley   /* We do not want this label automatically computed, instead we compute it here */
33389566063dSJacob Faibussowitsch   PetscCall(DMCreateLabel(subdm, "celltype"));
3339dd05d810SMatthew G. Knepley   for (d = 0; d <= sdim; ++d) {
3340e6ccafaeSMatthew G Knepley     for (p = 0; p < numSubPoints[d]; ++p) {
3341e6ccafaeSMatthew G Knepley       const PetscInt  point    = subpoints[d][p];
3342e6ccafaeSMatthew G Knepley       const PetscInt  subpoint = firstSubPoint[d] + p;
3343e6ccafaeSMatthew G Knepley       const PetscInt *cone;
334415100a53SVaclav Hapla       PetscInt        coneSize;
3345e6ccafaeSMatthew G Knepley 
33469566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
3347dd05d810SMatthew G. Knepley       if (cellHeight && (d == sdim)) {
334815100a53SVaclav Hapla         PetscInt coneSizeNew, c, val;
334915100a53SVaclav Hapla 
33509566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCone(dm, point, &cone));
3351e6ccafaeSMatthew G Knepley         for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
33529566063dSJacob Faibussowitsch           PetscCall(DMLabelGetValue(subpointMap, cone[c], &val));
3353e6ccafaeSMatthew G Knepley           if (val >= 0) coneSizeNew++;
3354e6ccafaeSMatthew G Knepley         }
33559566063dSJacob Faibussowitsch         PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew));
33569566063dSJacob Faibussowitsch         PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST));
335715100a53SVaclav Hapla       } else {
335815100a53SVaclav Hapla         DMPolytopeType ct;
335915100a53SVaclav Hapla 
336015100a53SVaclav Hapla         PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize));
336115100a53SVaclav Hapla         PetscCall(DMPlexGetCellType(dm, point, &ct));
336215100a53SVaclav Hapla         PetscCall(DMPlexSetCellType(subdm, subpoint, ct));
3363e6ccafaeSMatthew G Knepley       }
3364e6ccafaeSMatthew G Knepley     }
3365e6ccafaeSMatthew G Knepley   }
33669566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
33679566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3368e6ccafaeSMatthew G Knepley   /* Set cones */
33699566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
33709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew));
3371dd05d810SMatthew G. Knepley   for (d = 0; d <= sdim; ++d) {
3372e6ccafaeSMatthew G Knepley     for (p = 0; p < numSubPoints[d]; ++p) {
3373e6ccafaeSMatthew G Knepley       const PetscInt  point    = subpoints[d][p];
3374e6ccafaeSMatthew G Knepley       const PetscInt  subpoint = firstSubPoint[d] + p;
33750e49e2e2SMatthew G. Knepley       const PetscInt *cone, *ornt;
33760d366550SMatthew G. Knepley       PetscInt        coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0;
3377e6ccafaeSMatthew G Knepley 
3378dd05d810SMatthew G. Knepley       if (d == sdim - 1) {
33790d366550SMatthew G. Knepley         const PetscInt *support, *cone, *ornt;
33800d366550SMatthew G. Knepley         PetscInt        supportSize, coneSize, s, subc;
33810d366550SMatthew G. Knepley 
33829566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
33839566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
33840d366550SMatthew G. Knepley         for (s = 0; s < supportSize; ++s) {
3385064cae4fSPierre Jolivet           PetscBool isHybrid = PETSC_FALSE;
3386412e9a14SMatthew G. Knepley 
33879566063dSJacob Faibussowitsch           PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid));
3388412e9a14SMatthew G. Knepley           if (!isHybrid) continue;
33899566063dSJacob Faibussowitsch           PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc));
33900d366550SMatthew G. Knepley           if (subc >= 0) {
33910d366550SMatthew G. Knepley             const PetscInt ccell = subpoints[d + 1][subc];
33920d366550SMatthew G. Knepley 
33939566063dSJacob Faibussowitsch             PetscCall(DMPlexGetCone(dm, ccell, &cone));
33949566063dSJacob Faibussowitsch             PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize));
33959566063dSJacob Faibussowitsch             PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt));
33960d366550SMatthew G. Knepley             for (c = 0; c < coneSize; ++c) {
33970d366550SMatthew G. Knepley               if (cone[c] == point) {
33980d366550SMatthew G. Knepley                 fornt = ornt[c];
33990d366550SMatthew G. Knepley                 break;
34000d366550SMatthew G. Knepley               }
34010d366550SMatthew G. Knepley             }
34020d366550SMatthew G. Knepley             break;
34030d366550SMatthew G. Knepley           }
34040d366550SMatthew G. Knepley         }
34050d366550SMatthew G. Knepley       }
34069566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(dm, point, &coneSize));
34079566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize));
34089566063dSJacob Faibussowitsch       PetscCall(DMPlexGetCone(dm, point, &cone));
34099566063dSJacob Faibussowitsch       PetscCall(DMPlexGetConeOrientation(dm, point, &ornt));
3410e6ccafaeSMatthew G Knepley       for (c = 0, coneSizeNew = 0; c < coneSize; ++c) {
34119566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc));
341201a2673eSMatthew G. Knepley         if (subc >= 0) {
341301a2673eSMatthew G. Knepley           coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc;
34143982b651SMatthew G. Knepley           orntNew[coneSizeNew] = ornt[c];
341501a2673eSMatthew G. Knepley           ++coneSizeNew;
341601a2673eSMatthew G. Knepley         }
3417e6ccafaeSMatthew G Knepley       }
341863a3b9bcSJacob Faibussowitsch       PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize);
34199566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(subdm, subpoint, coneNew));
34209566063dSJacob Faibussowitsch       PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew));
34219566063dSJacob Faibussowitsch       if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt));
3422e6ccafaeSMatthew G Knepley     }
3423e6ccafaeSMatthew G Knepley   }
34249566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coneNew, orntNew));
34259566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
34269566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3427e6ccafaeSMatthew G Knepley   /* Build coordinates */
3428e6ccafaeSMatthew G Knepley   {
3429e6ccafaeSMatthew G Knepley     PetscSection coordSection, subCoordSection;
3430e6ccafaeSMatthew G Knepley     Vec          coordinates, subCoordinates;
3431e6ccafaeSMatthew G Knepley     PetscScalar *coords, *subCoords;
3432c0e8cf5fSMatthew G. Knepley     PetscInt     cdim, numComp, coordSize;
343324640c55SToby Isaac     const char  *name;
3434e6ccafaeSMatthew G Knepley 
34359566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &cdim));
34369566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
34379566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
34389566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
34399566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
34409566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
34419566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
34429566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0]));
3443e6ccafaeSMatthew G Knepley     for (v = 0; v < numSubPoints[0]; ++v) {
3444e6ccafaeSMatthew G Knepley       const PetscInt vertex    = subpoints[0][v];
3445e6ccafaeSMatthew G Knepley       const PetscInt subvertex = firstSubPoint[0] + v;
3446e6ccafaeSMatthew G Knepley       PetscInt       dof;
3447e6ccafaeSMatthew G Knepley 
34489566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
34499566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
34509566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3451e6ccafaeSMatthew G Knepley     }
34529566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
34539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
34549566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
34559566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
34569566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
34579566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
34589566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(subCoordinates, cdim));
34599566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates, VECSTANDARD));
34609566063dSJacob Faibussowitsch     PetscCall(VecGetArray(coordinates, &coords));
34619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(subCoordinates, &subCoords));
3462e6ccafaeSMatthew G Knepley     for (v = 0; v < numSubPoints[0]; ++v) {
3463e6ccafaeSMatthew G Knepley       const PetscInt vertex    = subpoints[0][v];
3464e6ccafaeSMatthew G Knepley       const PetscInt subvertex = firstSubPoint[0] + v;
3465e6ccafaeSMatthew G Knepley       PetscInt       dof, off, sdof, soff, d;
3466e6ccafaeSMatthew G Knepley 
34679566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
34689566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
34699566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
34709566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
347163a3b9bcSJacob Faibussowitsch       PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3472efa14ee0SMatthew G Knepley       for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
3473e6ccafaeSMatthew G Knepley     }
34749566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(coordinates, &coords));
34759566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(subCoordinates, &subCoords));
34769566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
34779566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3478e6ccafaeSMatthew G Knepley   }
34793982b651SMatthew G. Knepley   /* Build SF: We need this complexity because subpoints might not be selected on the owning process */
34803982b651SMatthew G. Knepley   {
34813982b651SMatthew G. Knepley     PetscSF            sfPoint, sfPointSub;
34823982b651SMatthew G. Knepley     IS                 subpIS;
34833982b651SMatthew G. Knepley     const PetscSFNode *remotePoints;
34845033f954SMatthew G. Knepley     PetscSFNode       *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL;
34855033f954SMatthew G. Knepley     const PetscInt    *localPoints, *subpoints, *rootdegree;
3486dd05d810SMatthew G. Knepley     PetscInt          *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL;
34875033f954SMatthew G. Knepley     PetscInt           numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p;
34885033f954SMatthew G. Knepley     PetscMPIInt        rank, size;
34893982b651SMatthew G. Knepley 
34909566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
34915033f954SMatthew G. Knepley     PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
34929566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sfPoint));
34939566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(subdm, &sfPointSub));
34949566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
34959566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots));
34969566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(subdm, &subpIS));
34973982b651SMatthew G. Knepley     if (subpIS) {
3498dd05d810SMatthew G. Knepley       PetscBool sorted = PETSC_TRUE;
3499dd05d810SMatthew G. Knepley 
35009566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(subpIS, &subpoints));
35019566063dSJacob Faibussowitsch       PetscCall(ISGetLocalSize(subpIS, &numSubpoints));
3502dd05d810SMatthew G. Knepley       for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE;
3503dd05d810SMatthew G. Knepley       if (!sorted) {
3504dd05d810SMatthew G. Knepley         PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices));
3505dd05d810SMatthew G. Knepley         for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p;
3506dd05d810SMatthew G. Knepley         PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints));
3507dd05d810SMatthew G. Knepley         PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices));
3508dd05d810SMatthew G. Knepley       }
35093982b651SMatthew G. Knepley     }
35109566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
35113982b651SMatthew G. Knepley     if (numRoots >= 0) {
35125033f954SMatthew G. Knepley       PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree));
35135033f954SMatthew G. Knepley       PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree));
35149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners));
35153982b651SMatthew G. Knepley       for (p = 0; p < pEnd - pStart; ++p) {
35163982b651SMatthew G. Knepley         newLocalPoints[p].rank  = -2;
35173982b651SMatthew G. Knepley         newLocalPoints[p].index = -2;
35183982b651SMatthew G. Knepley       }
35193982b651SMatthew G. Knepley       /* Set subleaves */
35203982b651SMatthew G. Knepley       for (l = 0; l < numLeaves; ++l) {
35213982b651SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3522dd05d810SMatthew G. Knepley         const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices);
35233982b651SMatthew G. Knepley 
35243982b651SMatthew G. Knepley         if (subpoint < 0) continue;
35253982b651SMatthew G. Knepley         newLocalPoints[point - pStart].rank  = rank;
35263982b651SMatthew G. Knepley         newLocalPoints[point - pStart].index = subpoint;
35273982b651SMatthew G. Knepley         ++numSubleaves;
35283982b651SMatthew G. Knepley       }
35293982b651SMatthew G. Knepley       /* Must put in owned subpoints */
35303982b651SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
35313982b651SMatthew G. Knepley         newOwners[p - pStart].rank  = -3;
35323982b651SMatthew G. Knepley         newOwners[p - pStart].index = -3;
35333982b651SMatthew G. Knepley       }
3534d9384f27SMatthew G. Knepley       for (p = 0; p < numSubpoints; ++p) {
35355033f954SMatthew G. Knepley         /* Hold on to currently owned points */
35365033f954SMatthew G. Knepley         if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size;
35375033f954SMatthew G. Knepley         else newOwners[subpoints[p] - pStart].rank = rank;
3538d9384f27SMatthew G. Knepley         newOwners[subpoints[p] - pStart].index = p;
35393982b651SMatthew G. Knepley       }
35409566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
35419566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
35429371c9d4SSatish Balay       for (p = pStart; p < pEnd; ++p)
35439371c9d4SSatish Balay         if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size;
35449566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE));
35459566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE));
35469566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubleaves, &slocalPoints));
35479566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubleaves, &sremotePoints));
35485033f954SMatthew G. Knepley       for (l = 0; l < numLeaves; ++l) {
35493982b651SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3550dd05d810SMatthew G. Knepley         const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices);
35513982b651SMatthew G. Knepley 
35523982b651SMatthew G. Knepley         if (subpoint < 0) continue;
35539371c9d4SSatish Balay         if (newLocalPoints[point].rank == rank) {
35549371c9d4SSatish Balay           ++ll;
35559371c9d4SSatish Balay           continue;
35569371c9d4SSatish Balay         }
35573982b651SMatthew G. Knepley         slocalPoints[sl]        = subpoint;
35583982b651SMatthew G. Knepley         sremotePoints[sl].rank  = newLocalPoints[point].rank;
35593982b651SMatthew G. Knepley         sremotePoints[sl].index = newLocalPoints[point].index;
356063a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
356163a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
35623982b651SMatthew G. Knepley         ++sl;
35633982b651SMatthew G. Knepley       }
35641dca8a05SBarry Smith       PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves);
35659566063dSJacob Faibussowitsch       PetscCall(PetscFree2(newLocalPoints, newOwners));
35669566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
35673982b651SMatthew G. Knepley     }
356848a46eb9SPierre Jolivet     if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints));
3569dd05d810SMatthew G. Knepley     PetscCall(PetscFree2(sortedPoints, sortedIndices));
35703982b651SMatthew G. Knepley   }
3571212103e5SMatthew Knepley   /* Filter labels */
35729566063dSJacob Faibussowitsch   PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm));
3573efa14ee0SMatthew G Knepley   /* Cleanup */
3574dd05d810SMatthew G. Knepley   for (d = 0; d <= sdim; ++d) {
35759566063dSJacob Faibussowitsch     if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d]));
35769566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&subpointIS[d]));
3577e6ccafaeSMatthew G Knepley   }
35789566063dSJacob Faibussowitsch   PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints));
35793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3580e6ccafaeSMatthew G Knepley }
3581e6ccafaeSMatthew G Knepley 
3582d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm)
3583d71ae5a4SJacob Faibussowitsch {
35843982b651SMatthew G. Knepley   PetscFunctionBegin;
35859566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm));
35863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35873982b651SMatthew G. Knepley }
35883982b651SMatthew G. Knepley 
3589d0fa310fSMatthew G. Knepley /*@
3590e6ccafaeSMatthew G Knepley   DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label
3591e6ccafaeSMatthew G Knepley 
3592e6ccafaeSMatthew G Knepley   Input Parameters:
3593e6ccafaeSMatthew G Knepley + dm           - The original mesh
3594158acfadSMatthew G. Knepley . vertexLabel  - The DMLabel marking points contained in the surface
3595158acfadSMatthew G. Knepley . value        - The label value to use
3596158acfadSMatthew G. Knepley - markedFaces  - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked
3597e6ccafaeSMatthew G Knepley 
3598e6ccafaeSMatthew G Knepley   Output Parameter:
3599e6ccafaeSMatthew G Knepley . subdm - The surface mesh
3600e6ccafaeSMatthew G Knepley 
3601e6ccafaeSMatthew G Knepley   Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap().
3602e6ccafaeSMatthew G Knepley 
3603e6ccafaeSMatthew G Knepley   Level: developer
3604e6ccafaeSMatthew G Knepley 
3605db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`
3606830e53efSMatthew G. Knepley @*/
3607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm)
3608d71ae5a4SJacob Faibussowitsch {
3609827c4036SVaclav Hapla   DMPlexInterpolatedFlag interpolated;
3610827c4036SVaclav Hapla   PetscInt               dim, cdim;
3611e6ccafaeSMatthew G Knepley 
3612e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3613e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3614064a246eSJacob Faibussowitsch   PetscValidPointer(subdm, 5);
36159566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
36169566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
36179566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
36189566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*subdm, dim - 1));
36199566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
36209566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*subdm, cdim));
36219566063dSJacob Faibussowitsch   PetscCall(DMPlexIsInterpolated(dm, &interpolated));
362208401ef6SPierre Jolivet   PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes");
3623827c4036SVaclav Hapla   if (interpolated) {
36249566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm));
3625e6ccafaeSMatthew G Knepley   } else {
36269566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm));
3627e6ccafaeSMatthew G Knepley   }
36285de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
36293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3630e6ccafaeSMatthew G Knepley }
3631e6ccafaeSMatthew G Knepley 
3632d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm)
3633d71ae5a4SJacob Faibussowitsch {
3634766ab985SMatthew G. Knepley   MPI_Comm        comm;
3635766ab985SMatthew G. Knepley   DMLabel         subpointMap;
3636766ab985SMatthew G. Knepley   IS              subvertexIS;
3637766ab985SMatthew G. Knepley   const PetscInt *subVertices;
3638fed694aaSMatthew G. Knepley   PetscInt        numSubVertices, firstSubVertex, numSubCells, *subCells = NULL;
3639766ab985SMatthew G. Knepley   PetscInt       *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV;
3640412e9a14SMatthew G. Knepley   PetscInt        c, f;
3641766ab985SMatthew G. Knepley 
3642766ab985SMatthew G. Knepley   PetscFunctionBegin;
36439566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
3644766ab985SMatthew G. Knepley   /* Create subpointMap which marks the submesh */
36459566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap));
36469566063dSJacob Faibussowitsch   PetscCall(DMPlexSetSubpointMap(subdm, subpointMap));
36479566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&subpointMap));
36489566063dSJacob Faibussowitsch   PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm));
3649766ab985SMatthew G. Knepley   /* Setup chart */
36509566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices));
36519566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells));
36529566063dSJacob Faibussowitsch   PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices));
36539566063dSJacob Faibussowitsch   PetscCall(DMPlexSetVTKCellHeight(subdm, 1));
3654766ab985SMatthew G. Knepley   /* Set cone sizes */
3655766ab985SMatthew G. Knepley   firstSubVertex = numSubCells;
3656766ab985SMatthew G. Knepley   firstSubFace   = numSubCells + numSubVertices;
3657766ab985SMatthew G. Knepley   newFacePoint   = firstSubFace;
36589566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS));
36599566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices));
366048a46eb9SPierre Jolivet   for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1));
366148a46eb9SPierre Jolivet   for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV));
36629566063dSJacob Faibussowitsch   PetscCall(DMSetUp(subdm));
3663766ab985SMatthew G. Knepley   /* Create face cones */
36649566063dSJacob Faibussowitsch   PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL));
36659566063dSJacob Faibussowitsch   PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
3666766ab985SMatthew G. Knepley   for (c = 0; c < numSubCells; ++c) {
3667766ab985SMatthew G. Knepley     const PetscInt  cell    = subCells[c];
3668766ab985SMatthew G. Knepley     const PetscInt  subcell = c;
366987feddfdSMatthew G. Knepley     const PetscInt *cone, *cells;
3670064cae4fSPierre Jolivet     PetscBool       isHybrid = PETSC_FALSE;
367187feddfdSMatthew G. Knepley     PetscInt        numCells, subVertex, p, v;
3672766ab985SMatthew G. Knepley 
36739566063dSJacob Faibussowitsch     PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid));
3674412e9a14SMatthew G. Knepley     if (!isHybrid) continue;
36759566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCone(dm, cell, &cone));
367687feddfdSMatthew G. Knepley     for (v = 0; v < nFV; ++v) {
36779566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex));
367887feddfdSMatthew G. Knepley       subface[v] = firstSubVertex + subVertex;
367987feddfdSMatthew G. Knepley     }
36809566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, newFacePoint, subface));
36819566063dSJacob Faibussowitsch     PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint));
36829566063dSJacob Faibussowitsch     PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells));
368327234c99SMatthew G. Knepley     /* Not true in parallel
368408401ef6SPierre Jolivet     PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */
368587feddfdSMatthew G. Knepley     for (p = 0; p < numCells; ++p) {
368687feddfdSMatthew G. Knepley       PetscInt  negsubcell;
3687064cae4fSPierre Jolivet       PetscBool isHybrid = PETSC_FALSE;
3688766ab985SMatthew G. Knepley 
36899566063dSJacob Faibussowitsch       PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid));
3690412e9a14SMatthew G. Knepley       if (isHybrid) continue;
369187feddfdSMatthew G. Knepley       /* I know this is a crap search */
369287feddfdSMatthew G. Knepley       for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) {
369387feddfdSMatthew G. Knepley         if (subCells[negsubcell] == cells[p]) break;
3694766ab985SMatthew G. Knepley       }
369563a3b9bcSJacob Faibussowitsch       PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell);
36969566063dSJacob Faibussowitsch       PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint));
3697766ab985SMatthew G. Knepley     }
36989566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells));
369987feddfdSMatthew G. Knepley     ++newFacePoint;
3700766ab985SMatthew G. Knepley   }
37019566063dSJacob Faibussowitsch   PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface));
37029566063dSJacob Faibussowitsch   PetscCall(DMPlexSymmetrize(subdm));
37039566063dSJacob Faibussowitsch   PetscCall(DMPlexStratify(subdm));
3704766ab985SMatthew G. Knepley   /* Build coordinates */
3705766ab985SMatthew G. Knepley   {
3706766ab985SMatthew G. Knepley     PetscSection coordSection, subCoordSection;
3707766ab985SMatthew G. Knepley     Vec          coordinates, subCoordinates;
3708766ab985SMatthew G. Knepley     PetscScalar *coords, *subCoords;
3709c0e8cf5fSMatthew G. Knepley     PetscInt     cdim, numComp, coordSize, v;
371024640c55SToby Isaac     const char  *name;
3711766ab985SMatthew G. Knepley 
37129566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateDim(dm, &cdim));
37139566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(dm, &coordSection));
37149566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinatesLocal(dm, &coordinates));
37159566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinateSection(subdm, &subCoordSection));
37169566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetNumFields(subCoordSection, 1));
37179566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp));
37189566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp));
37199566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices));
3720766ab985SMatthew G. Knepley     for (v = 0; v < numSubVertices; ++v) {
3721766ab985SMatthew G. Knepley       const PetscInt vertex    = subVertices[v];
3722766ab985SMatthew G. Knepley       const PetscInt subvertex = firstSubVertex + v;
3723766ab985SMatthew G. Knepley       PetscInt       dof;
3724766ab985SMatthew G. Knepley 
37259566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
37269566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof));
37279566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof));
3728766ab985SMatthew G. Knepley     }
37299566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(subCoordSection));
37309566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize));
37319566063dSJacob Faibussowitsch     PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates));
37329566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)coordinates, &name));
37339566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name));
37349566063dSJacob Faibussowitsch     PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE));
37359566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(subCoordinates, cdim));
37369566063dSJacob Faibussowitsch     PetscCall(VecSetType(subCoordinates, VECSTANDARD));
37379566063dSJacob Faibussowitsch     PetscCall(VecGetArray(coordinates, &coords));
37389566063dSJacob Faibussowitsch     PetscCall(VecGetArray(subCoordinates, &subCoords));
3739766ab985SMatthew G. Knepley     for (v = 0; v < numSubVertices; ++v) {
3740766ab985SMatthew G. Knepley       const PetscInt vertex    = subVertices[v];
3741766ab985SMatthew G. Knepley       const PetscInt subvertex = firstSubVertex + v;
3742766ab985SMatthew G. Knepley       PetscInt       dof, off, sdof, soff, d;
3743766ab985SMatthew G. Knepley 
37449566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(coordSection, vertex, &dof));
37459566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(coordSection, vertex, &off));
37469566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof));
37479566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff));
374863a3b9bcSJacob Faibussowitsch       PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof);
3749766ab985SMatthew G. Knepley       for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d];
3750766ab985SMatthew G. Knepley     }
37519566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(coordinates, &coords));
37529566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(subCoordinates, &subCoords));
37539566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates));
37549566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&subCoordinates));
3755766ab985SMatthew G. Knepley   }
3756aca35d17SMatthew G. Knepley   /* Build SF */
3757aca35d17SMatthew G. Knepley   CHKMEMQ;
3758aca35d17SMatthew G. Knepley   {
3759aca35d17SMatthew G. Knepley     PetscSF            sfPoint, sfPointSub;
3760aca35d17SMatthew G. Knepley     const PetscSFNode *remotePoints;
3761bdcf2095SMatthew G. Knepley     PetscSFNode       *sremotePoints, *newLocalPoints, *newOwners;
3762aca35d17SMatthew G. Knepley     const PetscInt    *localPoints;
3763bdcf2095SMatthew G. Knepley     PetscInt          *slocalPoints;
376449c26ae4SMatthew G. Knepley     PetscInt           numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd;
3765bdcf2095SMatthew G. Knepley     PetscMPIInt        rank;
3766aca35d17SMatthew G. Knepley 
37679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank));
37689566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sfPoint));
37699566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(subdm, &sfPointSub));
37709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
37719566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
37729566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints));
3773aca35d17SMatthew G. Knepley     if (numRoots >= 0) {
3774aca35d17SMatthew G. Knepley       /* Only vertices should be shared */
37759566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners));
3776bdcf2095SMatthew G. Knepley       for (p = 0; p < pEnd - pStart; ++p) {
3777bdcf2095SMatthew G. Knepley         newLocalPoints[p].rank  = -2;
3778bdcf2095SMatthew G. Knepley         newLocalPoints[p].index = -2;
3779bdcf2095SMatthew G. Knepley       }
37809e0823b2SMatthew G. Knepley       /* Set subleaves */
3781aca35d17SMatthew G. Knepley       for (l = 0; l < numLeaves; ++l) {
3782aca35d17SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3783bdcf2095SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
3784aca35d17SMatthew G. Knepley 
378563a3b9bcSJacob Faibussowitsch         PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point);
3786bdcf2095SMatthew G. Knepley         if (subPoint < 0) continue;
3787bdcf2095SMatthew G. Knepley         newLocalPoints[point - pStart].rank  = rank;
3788bdcf2095SMatthew G. Knepley         newLocalPoints[point - pStart].index = subPoint;
3789bdcf2095SMatthew G. Knepley         ++numSubLeaves;
3790aca35d17SMatthew G. Knepley       }
37919e0823b2SMatthew G. Knepley       /* Must put in owned subpoints */
37929e0823b2SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
37939e0823b2SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices);
37949e0823b2SMatthew G. Knepley 
37959e0823b2SMatthew G. Knepley         if (subPoint < 0) {
37969e0823b2SMatthew G. Knepley           newOwners[p - pStart].rank  = -3;
37979e0823b2SMatthew G. Knepley           newOwners[p - pStart].index = -3;
37989e0823b2SMatthew G. Knepley         } else {
37999e0823b2SMatthew G. Knepley           newOwners[p - pStart].rank  = rank;
38009e0823b2SMatthew G. Knepley           newOwners[p - pStart].index = subPoint;
38019e0823b2SMatthew G. Knepley         }
3802bdcf2095SMatthew G. Knepley       }
38039566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
38049566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC));
38059566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE));
38069566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE));
38079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints));
38089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints));
380949c26ae4SMatthew G. Knepley       for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) {
3810bdcf2095SMatthew G. Knepley         const PetscInt point    = localPoints[l];
3811bdcf2095SMatthew G. Knepley         const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices);
3812aca35d17SMatthew G. Knepley 
3813aca35d17SMatthew G. Knepley         if (subPoint < 0) continue;
38149371c9d4SSatish Balay         if (newLocalPoints[point].rank == rank) {
38159371c9d4SSatish Balay           ++ll;
38169371c9d4SSatish Balay           continue;
38179371c9d4SSatish Balay         }
3818aca35d17SMatthew G. Knepley         slocalPoints[sl]        = subPoint;
3819bdcf2095SMatthew G. Knepley         sremotePoints[sl].rank  = newLocalPoints[point].rank;
3820bdcf2095SMatthew G. Knepley         sremotePoints[sl].index = newLocalPoints[point].index;
382163a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point);
382263a3b9bcSJacob Faibussowitsch         PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point);
3823aca35d17SMatthew G. Knepley         ++sl;
3824aca35d17SMatthew G. Knepley       }
38259566063dSJacob Faibussowitsch       PetscCall(PetscFree2(newLocalPoints, newOwners));
38261dca8a05SBarry Smith       PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves);
38279566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER));
3828aca35d17SMatthew G. Knepley     }
3829aca35d17SMatthew G. Knepley   }
3830aca35d17SMatthew G. Knepley   CHKMEMQ;
3831766ab985SMatthew G. Knepley   /* Cleanup */
38329566063dSJacob Faibussowitsch   if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices));
38339566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&subvertexIS));
38349566063dSJacob Faibussowitsch   PetscCall(PetscFree(subCells));
38353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3836766ab985SMatthew G. Knepley }
3837766ab985SMatthew G. Knepley 
3838d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm)
3839d71ae5a4SJacob Faibussowitsch {
38403982b651SMatthew G. Knepley   DMLabel label = NULL;
3841766ab985SMatthew G. Knepley 
3842766ab985SMatthew G. Knepley   PetscFunctionBegin;
38439566063dSJacob Faibussowitsch   if (labelname) PetscCall(DMGetLabel(dm, labelname, &label));
38449566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm));
38453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3846766ab985SMatthew G. Knepley }
3847766ab985SMatthew G. Knepley 
3848c08575a3SMatthew G. Knepley /*@C
38497d2fefb6SMatthew G. Knepley   DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells.
3850766ab985SMatthew G. Knepley 
3851766ab985SMatthew G. Knepley   Input Parameters:
3852766ab985SMatthew G. Knepley + dm          - The original mesh
385327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells
38547afc1a8bSJed Brown . label       - A label name, or NULL
385527c04023SMatthew G. Knepley - value  - A label value
3856766ab985SMatthew G. Knepley 
3857766ab985SMatthew G. Knepley   Output Parameter:
3858766ab985SMatthew G. Knepley . subdm - The surface mesh
3859766ab985SMatthew G. Knepley 
3860766ab985SMatthew G. Knepley   Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap().
3861766ab985SMatthew G. Knepley 
3862766ab985SMatthew G. Knepley   Level: developer
3863766ab985SMatthew G. Knepley 
3864db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()`
3865c08575a3SMatthew G. Knepley @*/
3866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm)
3867d71ae5a4SJacob Faibussowitsch {
3868c0e8cf5fSMatthew G. Knepley   PetscInt dim, cdim, depth;
3869766ab985SMatthew G. Knepley 
3870766ab985SMatthew G. Knepley   PetscFunctionBegin;
3871766ab985SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
387227c04023SMatthew G. Knepley   PetscValidPointer(subdm, 5);
38739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
38749566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
38759566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
38769566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
38779566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*subdm, dim - 1));
38789566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
38799566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*subdm, cdim));
3880766ab985SMatthew G. Knepley   if (depth == dim) {
38819566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm));
3882766ab985SMatthew G. Knepley   } else {
38839566063dSJacob Faibussowitsch     PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm));
3884e6ccafaeSMatthew G Knepley   }
38855de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
38863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3887e6ccafaeSMatthew G Knepley }
3888e6ccafaeSMatthew G Knepley 
3889bec263e5SMatthew G. Knepley /*@
3890bec263e5SMatthew G. Knepley   DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh
3891bec263e5SMatthew G. Knepley 
3892bec263e5SMatthew G. Knepley   Input Parameters:
3893bec263e5SMatthew G. Knepley + dm        - The original mesh
3894bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh
3895bec263e5SMatthew G. Knepley - value     - The label value to use
3896bec263e5SMatthew G. Knepley 
3897bec263e5SMatthew G. Knepley   Output Parameter:
3898bec263e5SMatthew G. Knepley . subdm - The new mesh
3899bec263e5SMatthew G. Knepley 
3900dd05d810SMatthew G. Knepley   Notes:
3901dd05d810SMatthew G. Knepley   This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`.
3902bec263e5SMatthew G. Knepley 
3903bec263e5SMatthew G. Knepley   Level: developer
3904bec263e5SMatthew G. Knepley 
3905dd05d810SMatthew G. Knepley .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()`
3906bec263e5SMatthew G. Knepley @*/
3907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm)
3908d71ae5a4SJacob Faibussowitsch {
3909b47cd10cSMatthew G. Knepley   PetscInt dim, overlap;
3910bec263e5SMatthew G. Knepley 
3911bec263e5SMatthew G. Knepley   PetscFunctionBegin;
3912bec263e5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3913064a246eSJacob Faibussowitsch   PetscValidPointer(subdm, 4);
39149566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
39159566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm));
39169566063dSJacob Faibussowitsch   PetscCall(DMSetType(*subdm, DMPLEX));
3917bec263e5SMatthew G. Knepley   /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */
39189566063dSJacob Faibussowitsch   PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm));
39195de52c6dSVaclav Hapla   PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm));
3920b47cd10cSMatthew G. Knepley   // It is possible to obtain a surface mesh where some faces are in SF
3921b47cd10cSMatthew G. Knepley   //   We should either mark the mesh as having an overlap, or delete these from the SF
3922b47cd10cSMatthew G. Knepley   PetscCall(DMPlexGetOverlap(dm, &overlap));
3923b47cd10cSMatthew G. Knepley   if (!overlap) {
3924b47cd10cSMatthew G. Knepley     PetscSF         sf;
3925b47cd10cSMatthew G. Knepley     const PetscInt *leaves;
3926b47cd10cSMatthew G. Knepley     PetscInt        cStart, cEnd, Nl;
3927b47cd10cSMatthew G. Knepley     PetscBool       hasSubcell = PETSC_FALSE, ghasSubcell;
3928b47cd10cSMatthew G. Knepley 
3929b47cd10cSMatthew G. Knepley     PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd));
3930b47cd10cSMatthew G. Knepley     PetscCall(DMGetPointSF(*subdm, &sf));
3931b47cd10cSMatthew G. Knepley     PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL));
3932b47cd10cSMatthew G. Knepley     for (PetscInt l = 0; l < Nl; ++l) {
3933b47cd10cSMatthew G. Knepley       const PetscInt point = leaves ? leaves[l] : l;
3934b47cd10cSMatthew G. Knepley 
3935b47cd10cSMatthew G. Knepley       if (point >= cStart && point < cEnd) {
3936b47cd10cSMatthew G. Knepley         hasSubcell = PETSC_TRUE;
3937b47cd10cSMatthew G. Knepley         break;
3938b47cd10cSMatthew G. Knepley       }
3939b47cd10cSMatthew G. Knepley     }
3940b47cd10cSMatthew G. Knepley     PetscCall(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
3941b47cd10cSMatthew G. Knepley     if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1));
3942b47cd10cSMatthew G. Knepley   }
39433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3944bec263e5SMatthew G. Knepley }
3945bec263e5SMatthew G. Knepley 
394664beef6dSMatthew G. Knepley /*@
394764beef6dSMatthew G. Knepley   DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values
394864beef6dSMatthew G. Knepley 
394964beef6dSMatthew G. Knepley   Input Parameter:
395064beef6dSMatthew G. Knepley . dm - The submesh DM
395164beef6dSMatthew G. Knepley 
395264beef6dSMatthew G. Knepley   Output Parameter:
395364beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh
395464beef6dSMatthew G. Knepley 
395564beef6dSMatthew G. Knepley   Level: developer
395664beef6dSMatthew G. Knepley 
3957db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
395864beef6dSMatthew G. Knepley @*/
3959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap)
3960d71ae5a4SJacob Faibussowitsch {
3961e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3962e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3963e6ccafaeSMatthew G Knepley   PetscValidPointer(subpointMap, 2);
396465663942SMatthew G. Knepley   *subpointMap = ((DM_Plex *)dm->data)->subpointMap;
39653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3966e6ccafaeSMatthew G Knepley }
3967e6ccafaeSMatthew G Knepley 
3968c08575a3SMatthew G. Knepley /*@
3969c08575a3SMatthew G. Knepley   DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values
3970c08575a3SMatthew G. Knepley 
3971c08575a3SMatthew G. Knepley   Input Parameters:
3972c08575a3SMatthew G. Knepley + dm - The submesh DM
3973c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh
3974c08575a3SMatthew G. Knepley 
3975c08575a3SMatthew G. Knepley   Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh()
3976c08575a3SMatthew G. Knepley 
3977c08575a3SMatthew G. Knepley   Level: developer
3978c08575a3SMatthew G. Knepley 
3979db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()`
3980c08575a3SMatthew G. Knepley @*/
3981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap)
3982d71ae5a4SJacob Faibussowitsch {
3983e6ccafaeSMatthew G Knepley   DM_Plex *mesh = (DM_Plex *)dm->data;
3984285d324eSMatthew G. Knepley   DMLabel  tmp;
3985e6ccafaeSMatthew G Knepley 
3986e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
3987e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3988285d324eSMatthew G. Knepley   tmp               = mesh->subpointMap;
3989e6ccafaeSMatthew G Knepley   mesh->subpointMap = subpointMap;
39909566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap));
39919566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&tmp));
39923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3993e6ccafaeSMatthew G Knepley }
3994e6ccafaeSMatthew G Knepley 
3995d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS)
3996d71ae5a4SJacob Faibussowitsch {
399797d8846cSMatthew Knepley   DMLabel  spmap;
399897d8846cSMatthew Knepley   PetscInt depth, d;
399997d8846cSMatthew Knepley 
400097d8846cSMatthew Knepley   PetscFunctionBegin;
40019566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(dm, &spmap));
40029566063dSJacob Faibussowitsch   PetscCall(DMPlexGetDepth(dm, &depth));
400397d8846cSMatthew Knepley   if (spmap && depth >= 0) {
400497d8846cSMatthew Knepley     DM_Plex  *mesh = (DM_Plex *)dm->data;
400597d8846cSMatthew Knepley     PetscInt *points, *depths;
400697d8846cSMatthew Knepley     PetscInt  pStart, pEnd, p, off;
400797d8846cSMatthew Knepley 
40089566063dSJacob Faibussowitsch     PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
400963a3b9bcSJacob Faibussowitsch     PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart);
40109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(pEnd, &points));
40119566063dSJacob Faibussowitsch     PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths));
401297d8846cSMatthew Knepley     depths[0] = depth;
401397d8846cSMatthew Knepley     depths[1] = 0;
4014ad540459SPierre Jolivet     for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d;
401597d8846cSMatthew Knepley     for (d = 0, off = 0; d <= depth; ++d) {
401697d8846cSMatthew Knepley       const PetscInt dep = depths[d];
401797d8846cSMatthew Knepley       PetscInt       depStart, depEnd, n;
401897d8846cSMatthew Knepley 
40199566063dSJacob Faibussowitsch       PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd));
40209566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumSize(spmap, dep, &n));
402197d8846cSMatthew Knepley       if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */
402263a3b9bcSJacob Faibussowitsch         PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart);
402397d8846cSMatthew Knepley       } else {
402497d8846cSMatthew Knepley         if (!n) {
402597d8846cSMatthew Knepley           if (d == 0) {
402697d8846cSMatthew Knepley             /* Missing cells */
402797d8846cSMatthew Knepley             for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1;
402897d8846cSMatthew Knepley           } else {
402997d8846cSMatthew Knepley             /* Missing faces */
403097d8846cSMatthew Knepley             for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT;
403197d8846cSMatthew Knepley           }
403297d8846cSMatthew Knepley         }
403397d8846cSMatthew Knepley       }
403497d8846cSMatthew Knepley       if (n) {
403597d8846cSMatthew Knepley         IS              is;
403697d8846cSMatthew Knepley         const PetscInt *opoints;
403797d8846cSMatthew Knepley 
40389566063dSJacob Faibussowitsch         PetscCall(DMLabelGetStratumIS(spmap, dep, &is));
40399566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(is, &opoints));
404097d8846cSMatthew Knepley         for (p = 0; p < n; ++p, ++off) points[off] = opoints[p];
40419566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(is, &opoints));
40429566063dSJacob Faibussowitsch         PetscCall(ISDestroy(&is));
404397d8846cSMatthew Knepley       }
404497d8846cSMatthew Knepley     }
40459566063dSJacob Faibussowitsch     PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths));
404663a3b9bcSJacob Faibussowitsch     PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd);
40479566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS));
40489566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState));
404997d8846cSMatthew Knepley   }
40503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
405197d8846cSMatthew Knepley }
405297d8846cSMatthew Knepley 
405364beef6dSMatthew G. Knepley /*@
405497d8846cSMatthew Knepley   DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data
4055e6ccafaeSMatthew G Knepley 
4056e6ccafaeSMatthew G Knepley   Input Parameter:
4057e6ccafaeSMatthew G Knepley . dm - The submesh DM
4058e6ccafaeSMatthew G Knepley 
4059e6ccafaeSMatthew G Knepley   Output Parameter:
40600298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh
4061e6ccafaeSMatthew G Knepley 
40623982b651SMatthew G. Knepley   Note: This IS is guaranteed to be sorted by the construction of the submesh
406364beef6dSMatthew G. Knepley 
406464beef6dSMatthew G. Knepley   Level: developer
406564beef6dSMatthew G. Knepley 
4066db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()`
406764beef6dSMatthew G. Knepley @*/
4068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS)
4069d71ae5a4SJacob Faibussowitsch {
407097d8846cSMatthew Knepley   DM_Plex         *mesh = (DM_Plex *)dm->data;
407197d8846cSMatthew Knepley   DMLabel          spmap;
407297d8846cSMatthew Knepley   PetscObjectState state;
4073e6ccafaeSMatthew G Knepley 
4074e6ccafaeSMatthew G Knepley   PetscFunctionBegin;
4075e6ccafaeSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4076e6ccafaeSMatthew G Knepley   PetscValidPointer(subpointIS, 2);
40779566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(dm, &spmap));
40789566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateGet((PetscObject)spmap, &state));
40799566063dSJacob Faibussowitsch   if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS));
408097d8846cSMatthew Knepley   *subpointIS = mesh->subpointIS;
40813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4082e6ccafaeSMatthew G Knepley }
4083559a1558SMatthew G. Knepley 
4084559a1558SMatthew G. Knepley /*@
4085a6e0b375SMatthew G. Knepley   DMGetEnclosureRelation - Get the relationship between dmA and dmB
4086559a1558SMatthew G. Knepley 
4087559a1558SMatthew G. Knepley   Input Parameters:
4088a6e0b375SMatthew G. Knepley + dmA - The first DM
4089a6e0b375SMatthew G. Knepley - dmB - The second DM
4090559a1558SMatthew G. Knepley 
4091559a1558SMatthew G. Knepley   Output Parameter:
4092a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB
4093559a1558SMatthew G. Knepley 
4094a6e0b375SMatthew G. Knepley   Level: intermediate
4095559a1558SMatthew G. Knepley 
4096db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()`
4097559a1558SMatthew G. Knepley @*/
4098d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel)
4099d71ae5a4SJacob Faibussowitsch {
4100a6e0b375SMatthew G. Knepley   DM       plexA, plexB, sdm;
4101559a1558SMatthew G. Knepley   DMLabel  spmap;
4102a6e0b375SMatthew G. Knepley   PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB;
4103559a1558SMatthew G. Knepley 
410444171101SMatthew G. Knepley   PetscFunctionBegin;
4105a6e0b375SMatthew G. Knepley   PetscValidPointer(rel, 3);
4106a6e0b375SMatthew G. Knepley   *rel = DM_ENC_NONE;
41073ba16761SJacob Faibussowitsch   if (!dmA || !dmB) PetscFunctionReturn(PETSC_SUCCESS);
4108a6e0b375SMatthew G. Knepley   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
4109064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
41109371c9d4SSatish Balay   if (dmA == dmB) {
41119371c9d4SSatish Balay     *rel = DM_ENC_EQUALITY;
41123ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
41139371c9d4SSatish Balay   }
41149566063dSJacob Faibussowitsch   PetscCall(DMConvert(dmA, DMPLEX, &plexA));
41159566063dSJacob Faibussowitsch   PetscCall(DMConvert(dmB, DMPLEX, &plexB));
41169566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA));
41179566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB));
4118a6e0b375SMatthew G. Knepley   /* Assumption 1: subDMs have smaller charts than the DMs that they originate from
4119a6e0b375SMatthew G. Knepley     - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */
4120a6e0b375SMatthew G. Knepley   if ((pStartA == pStartB) && (pEndA == pEndB)) {
4121a6e0b375SMatthew G. Knepley     *rel = DM_ENC_EQUALITY;
4122a6e0b375SMatthew G. Knepley     goto end;
4123559a1558SMatthew G. Knepley   }
4124a6e0b375SMatthew G. Knepley   NpA = pEndA - pStartA;
4125a6e0b375SMatthew G. Knepley   NpB = pEndB - pStartB;
4126a6e0b375SMatthew G. Knepley   if (NpA == NpB) goto end;
4127a6e0b375SMatthew G. Knepley   sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */
41289566063dSJacob Faibussowitsch   PetscCall(DMPlexGetSubpointMap(sdm, &spmap));
4129a6e0b375SMatthew G. Knepley   if (!spmap) goto end;
4130a6e0b375SMatthew G. Knepley   /* TODO Check the space mapped to by subpointMap is same size as dm */
4131a6e0b375SMatthew G. Knepley   if (NpA > NpB) {
4132a6e0b375SMatthew G. Knepley     *rel = DM_ENC_SUPERMESH;
4133a6e0b375SMatthew G. Knepley   } else {
4134a6e0b375SMatthew G. Knepley     *rel = DM_ENC_SUBMESH;
4135a6e0b375SMatthew G. Knepley   }
4136a6e0b375SMatthew G. Knepley end:
41379566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexA));
41389566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&plexB));
41393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4140559a1558SMatthew G. Knepley }
414144171101SMatthew G. Knepley 
414244171101SMatthew G. Knepley /*@
4143a6e0b375SMatthew G. Knepley   DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB
414444171101SMatthew G. Knepley 
414544171101SMatthew G. Knepley   Input Parameters:
4146a6e0b375SMatthew G. Knepley + dmA   - The first DM
4147a6e0b375SMatthew G. Knepley . dmB   - The second DM
4148a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB
4149a6e0b375SMatthew G. Knepley - pB    - A point of dmB
415044171101SMatthew G. Knepley 
415144171101SMatthew G. Knepley   Output Parameter:
4152a6e0b375SMatthew G. Knepley . pA    - The corresponding point of dmA
415344171101SMatthew G. Knepley 
4154a6e0b375SMatthew G. Knepley   Level: intermediate
415544171101SMatthew G. Knepley 
4156db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()`
415744171101SMatthew G. Knepley @*/
4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA)
4159d71ae5a4SJacob Faibussowitsch {
4160a6e0b375SMatthew G. Knepley   DM              sdm;
4161a6e0b375SMatthew G. Knepley   IS              subpointIS;
4162a6e0b375SMatthew G. Knepley   const PetscInt *subpoints;
4163a6e0b375SMatthew G. Knepley   PetscInt        numSubpoints;
416444171101SMatthew G. Knepley 
416544171101SMatthew G. Knepley   PetscFunctionBegin;
4166a6e0b375SMatthew G. Knepley   /* TODO Cache the IS, making it look like an index */
4167a6e0b375SMatthew G. Knepley   switch (etype) {
4168a6e0b375SMatthew G. Knepley   case DM_ENC_SUPERMESH:
4169a6e0b375SMatthew G. Knepley     sdm = dmB;
41709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
41719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subpointIS, &subpoints));
4172a6e0b375SMatthew G. Knepley     *pA = subpoints[pB];
41739566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4174a6e0b375SMatthew G. Knepley     break;
4175a6e0b375SMatthew G. Knepley   case DM_ENC_SUBMESH:
4176a6e0b375SMatthew G. Knepley     sdm = dmA;
41779566063dSJacob Faibussowitsch     PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS));
41789566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(subpointIS, &numSubpoints));
41799566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(subpointIS, &subpoints));
41809566063dSJacob Faibussowitsch     PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA));
4181a6e0b375SMatthew G. Knepley     if (*pA < 0) {
41829566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view"));
41839566063dSJacob Faibussowitsch       PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view"));
418463a3b9bcSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB);
4185a6e0b375SMatthew G. Knepley     }
41869566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(subpointIS, &subpoints));
4187a6e0b375SMatthew G. Knepley     break;
4188a6e0b375SMatthew G. Knepley   case DM_ENC_EQUALITY:
4189d71ae5a4SJacob Faibussowitsch   case DM_ENC_NONE:
4190d71ae5a4SJacob Faibussowitsch     *pA = pB;
4191d71ae5a4SJacob Faibussowitsch     break;
41929371c9d4SSatish Balay   case DM_ENC_UNKNOWN: {
4193a6e0b375SMatthew G. Knepley     DMEnclosureType enc;
419444171101SMatthew G. Knepley 
41959566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc));
41969566063dSJacob Faibussowitsch     PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA));
41979371c9d4SSatish Balay   } break;
4198d71ae5a4SJacob Faibussowitsch   default:
4199d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype);
420044171101SMatthew G. Knepley   }
42013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
420244171101SMatthew G. Knepley }
4203