1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6d71ae5a4SJacob Faibussowitsch { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_TRUE; 17d71ae5a4SJacob Faibussowitsch break; 18d71ae5a4SJacob Faibussowitsch default: 19d71ae5a4SJacob Faibussowitsch *isHybrid = PETSC_FALSE; 20d71ae5a4SJacob Faibussowitsch break; 21412e9a14SMatthew G. Knepley } 223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23412e9a14SMatthew G. Knepley } 24412e9a14SMatthew G. Knepley 25d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 26d71ae5a4SJacob Faibussowitsch { 27412e9a14SMatthew G. Knepley DMLabel ctLabel; 28412e9a14SMatthew G. Knepley 29412e9a14SMatthew G. Knepley PetscFunctionBegin; 30412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 31412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 329566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 33412e9a14SMatthew G. Knepley switch (dim) { 34d71ae5a4SJacob Faibussowitsch case 1: 35d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd)); 36d71ae5a4SJacob Faibussowitsch break; 37d71ae5a4SJacob Faibussowitsch case 2: 38d71ae5a4SJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd)); 39d71ae5a4SJacob Faibussowitsch break; 40412e9a14SMatthew G. Knepley case 3: 419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 429566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 43412e9a14SMatthew G. Knepley break; 44d71ae5a4SJacob Faibussowitsch default: 453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46412e9a14SMatthew G. Knepley } 473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48412e9a14SMatthew G. Knepley } 49412e9a14SMatthew G. Knepley 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 51d71ae5a4SJacob Faibussowitsch { 52429fa399SMatthew G. Knepley PetscSF sf; 53429fa399SMatthew G. Knepley const PetscInt *rootdegree, *leaves; 54429fa399SMatthew G. Knepley PetscInt overlap, Nr = -1, Nl, pStart, fStart, fEnd; 5530560a7bSMatthew G. Knepley 5630560a7bSMatthew G. Knepley PetscFunctionBegin; 57429fa399SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 58429fa399SMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 59429fa399SMatthew G. Knepley if (sf && !overlap) PetscCall(PetscSFGetGraph(sf, &Nr, &Nl, &leaves, NULL)); 60429fa399SMatthew G. Knepley if (Nr > 0) { 61429fa399SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sf, &rootdegree)); 62429fa399SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sf, &rootdegree)); 63429fa399SMatthew G. Knepley } else rootdegree = NULL; 64429fa399SMatthew G. Knepley PetscCall(DMPlexGetChart(dm, &pStart, NULL)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight + 1, &fStart, &fEnd)); 66429fa399SMatthew G. Knepley for (PetscInt f = fStart; f < fEnd; ++f) { 67429fa399SMatthew G. Knepley PetscInt supportSize, loc = -1; 6830560a7bSMatthew G. Knepley 699566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 70e752be1aSMatthew G. Knepley if (supportSize == 1) { 71429fa399SMatthew G. Knepley /* Do not mark faces which are shared, meaning 72429fa399SMatthew G. Knepley they are present in the pointSF, or 73429fa399SMatthew G. Knepley they have rootdegree > 0 74429fa399SMatthew G. Knepley since they presumably have cells on the other side */ 75429fa399SMatthew G. Knepley if (Nr > 0) { 76429fa399SMatthew G. Knepley PetscCall(PetscFindInt(f, Nl, leaves, &loc)); 77429fa399SMatthew G. Knepley if (rootdegree[f - pStart] || loc >= 0) continue; 78429fa399SMatthew G. Knepley } 79e752be1aSMatthew G. Knepley if (val < 0) { 80e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 81e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 82e752be1aSMatthew G. Knepley 839566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 84e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 859566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 86e752be1aSMatthew G. Knepley if (cval < 0) continue; 879566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 88e752be1aSMatthew G. Knepley break; 89e752be1aSMatthew G. Knepley } 909566063dSJacob Faibussowitsch if (cl == clSize * 2) PetscCall(DMLabelSetValue(label, f, 1)); 919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 92e752be1aSMatthew G. Knepley } else { 939566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 94e752be1aSMatthew G. Knepley } 95e752be1aSMatthew G. Knepley } 9630560a7bSMatthew G. Knepley } 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9830560a7bSMatthew G. Knepley } 9930560a7bSMatthew G. Knepley 100cd0c2139SMatthew G Knepley /*@ 101cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 102cd0c2139SMatthew G Knepley 103cd0c2139SMatthew G Knepley Not Collective 104cd0c2139SMatthew G Knepley 105d8d19677SJose E. Roman Input Parameters: 106429fa399SMatthew G. Knepley + dm - The original `DM` 107e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 108cd0c2139SMatthew G Knepley 109cd0c2139SMatthew G Knepley Output Parameter: 110e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 111cd0c2139SMatthew G Knepley 112429fa399SMatthew G. Knepley Note: 113429fa399SMatthew G. Knepley This function will use the point `PetscSF` from the input `DM` to exclude points on the partition boundary from being marked, unless the partition overlap is greater than zero. If you also wish to mark the partition boundary, you can use `DMSetPointSF()` to temporarily set it to NULL, and then reset it to the original object after the call. 114429fa399SMatthew G. Knepley 115cd0c2139SMatthew G Knepley Level: developer 116cd0c2139SMatthew G Knepley 117db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()` 11809f723d9SJed Brown @*/ 119d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 120d71ae5a4SJacob Faibussowitsch { 121827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 122cd0c2139SMatthew G Knepley 123cd0c2139SMatthew G Knepley PetscFunctionBegin; 124827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1259566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 12608401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 1279566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 129cd0c2139SMatthew G Knepley } 130cd0c2139SMatthew G Knepley 131d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 132d71ae5a4SJacob Faibussowitsch { 133b0bf5782SToby Isaac IS valueIS; 134ac51f24eSSander Arens PetscSF sfPoint; 135b0bf5782SToby Isaac const PetscInt *values; 136ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 137b0bf5782SToby Isaac 138b0bf5782SToby Isaac PetscFunctionBegin; 1399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 1429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 143b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 144b0bf5782SToby Isaac IS pointIS; 145b0bf5782SToby Isaac const PetscInt *points; 146b0bf5782SToby Isaac PetscInt numPoints, p; 147b0bf5782SToby Isaac 1489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1499566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 151b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 152b0bf5782SToby Isaac PetscInt q = points[p]; 153b0bf5782SToby Isaac PetscInt *closure = NULL; 154b0bf5782SToby Isaac PetscInt closureSize, c; 155b0bf5782SToby Isaac 156b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 157b0bf5782SToby Isaac continue; 158b0bf5782SToby Isaac } 1599566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 16048a46eb9SPierre Jolivet for (c = 0; c < closureSize * 2; c += 2) PetscCall(DMLabelSetValue(label, closure[c], values[v])); 1619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 162b0bf5782SToby Isaac } 1639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 165b0bf5782SToby Isaac } 1669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1689566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1699566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 170ac51f24eSSander Arens if (nroots >= 0) { 17126279d81SSanderA DMLabel lblRoots, lblLeaves; 17226279d81SSanderA IS valueIS, pointIS; 17326279d81SSanderA const PetscInt *values; 17426279d81SSanderA PetscInt numValues, v; 17526279d81SSanderA 17626279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1779566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 18126279d81SSanderA for (v = 0; v < numValues; ++v) { 18226279d81SSanderA const PetscInt value = values[v]; 18326279d81SSanderA 1849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1859566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 18726279d81SSanderA } 1889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1909566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 19126279d81SSanderA /* Push point contributions from roots into remote leaves */ 1929566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 19626279d81SSanderA for (v = 0; v < numValues; ++v) { 19726279d81SSanderA const PetscInt value = values[v]; 19826279d81SSanderA 1999566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 2009566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 2019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 20226279d81SSanderA } 2039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2059566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 20626279d81SSanderA } 2073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208b0bf5782SToby Isaac } 209b0bf5782SToby Isaac 2102be2b188SMatthew G Knepley /*@ 2112be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 2122be2b188SMatthew G Knepley 2132be2b188SMatthew G Knepley Input Parameters: 2142be2b188SMatthew G Knepley + dm - The DM 2152be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 2162be2b188SMatthew G Knepley 2172be2b188SMatthew G Knepley Output Parameter: 2182be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 2192be2b188SMatthew G Knepley 2202be2b188SMatthew G Knepley Level: developer 2212be2b188SMatthew G Knepley 222db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()` 2232be2b188SMatthew G Knepley @*/ 224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 225d71ae5a4SJacob Faibussowitsch { 2262be2b188SMatthew G Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2292be2b188SMatthew G Knepley } 2302be2b188SMatthew G Knepley 2316cf0e42fSMatthew G. Knepley /*@ 232a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2336cf0e42fSMatthew G. Knepley 2346cf0e42fSMatthew G. Knepley Input Parameters: 2356cf0e42fSMatthew G. Knepley + dm - The DM 2366cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2376cf0e42fSMatthew G. Knepley 2386cf0e42fSMatthew G. Knepley Output Parameter: 2396cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2406cf0e42fSMatthew G. Knepley 2416cf0e42fSMatthew G. Knepley Level: developer 2426cf0e42fSMatthew G. Knepley 2436cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2446cf0e42fSMatthew G. Knepley 245db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 2466cf0e42fSMatthew G. Knepley @*/ 247d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 248d71ae5a4SJacob Faibussowitsch { 2496cf0e42fSMatthew G. Knepley IS valueIS; 2506cf0e42fSMatthew G. Knepley const PetscInt *values; 2519df54392SMatthew G. Knepley PetscInt numValues, v, csStart, csEnd, chStart, chEnd; 2526cf0e42fSMatthew G. Knepley 2536cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2549df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &csStart, &csEnd)); 2559df54392SMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(dm, 0, &chStart, &chEnd)); 2569566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2596cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2606cf0e42fSMatthew G. Knepley IS pointIS; 2616cf0e42fSMatthew G. Knepley const PetscInt *points; 2626cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2636cf0e42fSMatthew G. Knepley 2649566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2676cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2689df54392SMatthew G. Knepley const PetscInt point = points[p]; 2696cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 2709df54392SMatthew G. Knepley PetscInt closureSize, cl, h, pStart, pEnd, cStart, cEnd; 2719df54392SMatthew G. Knepley 2729df54392SMatthew G. Knepley // If the point is a hybrid, allow hybrid cells 2739df54392SMatthew G. Knepley PetscCall(DMPlexGetPointHeight(dm, point, &h)); 2749df54392SMatthew G. Knepley PetscCall(DMPlexGetSimplexOrBoxCells(dm, h, &pStart, &pEnd)); 2759df54392SMatthew G. Knepley if (point >= pStart && point < pEnd) { 2769df54392SMatthew G. Knepley cStart = csStart; 2779df54392SMatthew G. Knepley cEnd = csEnd; 2789df54392SMatthew G. Knepley } else { 2799df54392SMatthew G. Knepley cStart = chStart; 2809df54392SMatthew G. Knepley cEnd = chEnd; 2819df54392SMatthew G. Knepley } 2826cf0e42fSMatthew G. Knepley 2839566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 28422eabd52SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 285a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 2869371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 2879371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 2889371c9d4SSatish Balay break; 2899371c9d4SSatish Balay } 29022eabd52SMatthew G. Knepley } 2919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2926cf0e42fSMatthew G. Knepley } 2939566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2956cf0e42fSMatthew G. Knepley } 2969566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2996cf0e42fSMatthew G. Knepley } 3006cf0e42fSMatthew G. Knepley 301f402d5e4SToby Isaac /*@ 302a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 303a6e0b375SMatthew G. Knepley 304a6e0b375SMatthew G. Knepley Input Parameters: 305a6e0b375SMatthew G. Knepley + dm - The DM 306a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 307a6e0b375SMatthew G. Knepley 308a6e0b375SMatthew G. Knepley Output Parameter: 309a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 310a6e0b375SMatthew G. Knepley 311a6e0b375SMatthew G. Knepley Level: developer 312a6e0b375SMatthew G. Knepley 313a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 314a6e0b375SMatthew G. Knepley 315db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 316a6e0b375SMatthew G. Knepley @*/ 317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 318d71ae5a4SJacob Faibussowitsch { 319a6e0b375SMatthew G. Knepley IS valueIS; 320a6e0b375SMatthew G. Knepley const PetscInt *values; 321a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 322a6e0b375SMatthew G. Knepley 323a6e0b375SMatthew G. Knepley PetscFunctionBegin; 3249566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 3269566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 329a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 330a6e0b375SMatthew G. Knepley IS pointIS; 331a6e0b375SMatthew G. Knepley const PetscInt *points; 332a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 333a6e0b375SMatthew G. Knepley 3349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3359566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 337a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 338a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 339a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 340a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 341a6e0b375SMatthew G. Knepley 342a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 344a6e0b375SMatthew G. Knepley for (cl = closureSize - 1; cl > 0; --cl) { 345a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl * 2]; 3469371c9d4SSatish Balay if ((cell >= cStart) && (cell < cEnd)) { 3479371c9d4SSatish Balay PetscCall(DMLabelSetValue(label, cell, values[v])); 3489371c9d4SSatish Balay break; 3499371c9d4SSatish Balay } 350a6e0b375SMatthew G. Knepley } 3519566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 352a6e0b375SMatthew G. Knepley } 3539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 355a6e0b375SMatthew G. Knepley } 3569566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 359a6e0b375SMatthew G. Knepley } 360a6e0b375SMatthew G. Knepley 361a6e0b375SMatthew G. Knepley /*@ 362f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 363f402d5e4SToby Isaac 364f402d5e4SToby Isaac Input Parameters: 365f402d5e4SToby Isaac + dm - The DM 366f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 367f402d5e4SToby Isaac 368f402d5e4SToby Isaac Output Parameter: 369f402d5e4SToby Isaac . label - A DMLabel without cells 370f402d5e4SToby Isaac 371f402d5e4SToby Isaac Level: developer 372f402d5e4SToby Isaac 373a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 374f402d5e4SToby Isaac 375db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 376f402d5e4SToby Isaac @*/ 377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 378d71ae5a4SJacob Faibussowitsch { 379f402d5e4SToby Isaac IS valueIS; 380f402d5e4SToby Isaac const PetscInt *values; 381485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 382f402d5e4SToby Isaac 383f402d5e4SToby Isaac PetscFunctionBegin; 3849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3859566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 388f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 389f402d5e4SToby Isaac IS pointIS; 390f402d5e4SToby Isaac const PetscInt *points; 391f402d5e4SToby Isaac PetscInt numPoints, p; 392f402d5e4SToby Isaac 3939566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 396f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 397f402d5e4SToby Isaac PetscInt point = points[p]; 398f402d5e4SToby Isaac 39948a46eb9SPierre Jolivet if (point >= cStart && point < cEnd) PetscCall(DMLabelClearValue(label, point, values[v])); 400f402d5e4SToby Isaac } 4019566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 4029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 403f402d5e4SToby Isaac } 4049566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 4059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 4063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 407f402d5e4SToby Isaac } 408f402d5e4SToby Isaac 40959eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 41059eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 411d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 412d71ae5a4SJacob Faibussowitsch { 4132582d50cSToby Isaac PetscInt d, off = 0; 4142582d50cSToby Isaac 4152582d50cSToby Isaac PetscFunctionBegin; 41659eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 4170974a383SToby Isaac for (d = 0; d < depth; d++) { 4182582d50cSToby Isaac PetscInt firstd = d; 4190974a383SToby Isaac PetscInt firstStart = depthShift[2 * d]; 4202582d50cSToby Isaac PetscInt e; 4212582d50cSToby Isaac 4222582d50cSToby Isaac for (e = d + 1; e <= depth; e++) { 4232582d50cSToby Isaac if (depthShift[2 * e] < firstStart) { 4242582d50cSToby Isaac firstd = e; 4252582d50cSToby Isaac firstStart = depthShift[2 * d]; 4262582d50cSToby Isaac } 4272582d50cSToby Isaac } 4282582d50cSToby Isaac if (firstd != d) { 4292582d50cSToby Isaac PetscInt swap[2]; 4302582d50cSToby Isaac 4312582d50cSToby Isaac e = firstd; 4322582d50cSToby Isaac swap[0] = depthShift[2 * d]; 4332582d50cSToby Isaac swap[1] = depthShift[2 * d + 1]; 4342582d50cSToby Isaac depthShift[2 * d] = depthShift[2 * e]; 4352582d50cSToby Isaac depthShift[2 * d + 1] = depthShift[2 * e + 1]; 4362582d50cSToby Isaac depthShift[2 * e] = swap[0]; 4372582d50cSToby Isaac depthShift[2 * e + 1] = swap[1]; 4382582d50cSToby Isaac } 4392582d50cSToby Isaac } 4402582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 4410974a383SToby Isaac for (d = 0; d <= depth; d++) { 4422582d50cSToby Isaac off += depthShift[2 * d + 1]; 44359eef20bSToby Isaac depthShift[2 * d + 1] = depthShift[2 * d] + off; 4442582d50cSToby Isaac } 4453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4462582d50cSToby Isaac } 4472582d50cSToby Isaac 4482582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 449d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 450d71ae5a4SJacob Faibussowitsch { 4512582d50cSToby Isaac PetscInt d; 4522582d50cSToby Isaac PetscInt newOff = 0; 4532582d50cSToby Isaac 4542582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4552582d50cSToby Isaac if (p < depthShift[2 * d]) return p + newOff; 4562582d50cSToby Isaac else newOff = depthShift[2 * d + 1] - depthShift[2 * d]; 4572582d50cSToby Isaac } 4580974a383SToby Isaac return p + newOff; 4592582d50cSToby Isaac } 4602582d50cSToby Isaac 4612582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 462d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 463d71ae5a4SJacob Faibussowitsch { 4642582d50cSToby Isaac PetscInt d; 4652582d50cSToby Isaac PetscInt newOff = 0; 4662582d50cSToby Isaac 4672582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4682582d50cSToby Isaac if (p < depthShift[2 * d + 1]) return p + newOff; 4692582d50cSToby Isaac else newOff = depthShift[2 * d] - depthShift[2 * d + 1]; 4702582d50cSToby Isaac } 4710974a383SToby Isaac return p + newOff; 472cd0c2139SMatthew G Knepley } 473cd0c2139SMatthew G Knepley 474d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 475d71ae5a4SJacob Faibussowitsch { 476cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 477fa8e8ae5SToby Isaac DMLabel depthLabel; 478cd0c2139SMatthew G Knepley 479cd0c2139SMatthew G Knepley PetscFunctionBegin; 4809566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 4813ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 482cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4839566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4840974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4859566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4869566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "depth")); 4879566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew, &depthLabel)); 4889566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 489cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 490cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 491fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 492fa8e8ae5SToby Isaac IS pIS; 493fa8e8ae5SToby Isaac 4949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 495fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 496fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4979566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4989566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 500cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 5012582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 502cd0c2139SMatthew G Knepley PetscInt size; 503412e9a14SMatthew G. Knepley DMPolytopeType ct; 504cd0c2139SMatthew G Knepley 5059566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5069566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 5079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 5089566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 5099566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 5109566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 511cd0c2139SMatthew G Knepley } 512cd0c2139SMatthew G Knepley } 5133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 514cd0c2139SMatthew G Knepley } 515cd0c2139SMatthew G Knepley 516d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 517d71ae5a4SJacob Faibussowitsch { 5182582d50cSToby Isaac PetscInt *newpoints; 5192582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 520cd0c2139SMatthew G Knepley 521cd0c2139SMatthew G Knepley PetscFunctionBegin; 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5233ba16761SJacob Faibussowitsch if (depth < 0) PetscFunctionReturn(PETSC_SUCCESS); 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 5269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)), &newpoints)); 527cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 5289566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 529cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 530cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 5312582d50cSToby Isaac PetscInt size, sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 532cd0c2139SMatthew G Knepley 5339566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 5349566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 5359566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 536ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 5379566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 5389566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 5399566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 5409566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 5419566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 542ad540459SPierre Jolivet for (i = 0; i < size; ++i) newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 543dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5449566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 545cd0c2139SMatthew G Knepley } 5469566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548cd0c2139SMatthew G Knepley } 549cd0c2139SMatthew G Knepley 550d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 551d71ae5a4SJacob Faibussowitsch { 552cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 553cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 554cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 555f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 556f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 557f2b8cce1SMatthew G. Knepley PetscBool hasCells; 558cd0c2139SMatthew G Knepley 559cd0c2139SMatthew G Knepley PetscFunctionBegin; 5609566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5619566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 563cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5649566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5659566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5669566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5679566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5689566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5699566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 573f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5749566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 575f2b8cce1SMatthew G. Knepley if (hasCells) { 576f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 577f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 578f2b8cce1SMatthew G. Knepley 5799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 582f2b8cce1SMatthew G. Knepley } 583f2b8cce1SMatthew G. Knepley } 584cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5859566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5869566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 587cd0c2139SMatthew G Knepley } 5889566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5919566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)newCoordinates, "coordinates")); 5939566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5949566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5959566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates, VECSTANDARD)); 5969566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5989566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5999566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 600f2b8cce1SMatthew G. Knepley if (hasCells) { 601f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 602f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 603f2b8cce1SMatthew G. Knepley 6049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 6059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 6069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 607f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 608f2b8cce1SMatthew G. Knepley } 609f2b8cce1SMatthew G. Knepley } 610cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 611cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 612cd0c2139SMatthew G Knepley 6139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 6149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 6159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 616f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff + d] = coords[off + d]; 617cd0c2139SMatthew G Knepley } 6189566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 6199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 6209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 6219566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 6223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 623cd0c2139SMatthew G Knepley } 624cd0c2139SMatthew G Knepley 625d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 626d71ae5a4SJacob Faibussowitsch { 627cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 628cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 629cd0c2139SMatthew G Knepley const PetscInt *localPoints; 630cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 6310e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 632cd0c2139SMatthew G Knepley 633cd0c2139SMatthew G Knepley PetscFunctionBegin; 6349566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 6359566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 6369566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 6376e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 638cd0c2139SMatthew G Knepley if (numRoots >= 0) { 6399566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd - pStart, &newRemoteLocation)); 6400e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 645cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6462582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 647cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 648cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 649cd0c2139SMatthew G Knepley } 6509566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6519566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6520e33faafSMatthew G. Knepley } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6540e33faafSMatthew G. Knepley } 6550e33faafSMatthew G. Knepley 656d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 657d71ae5a4SJacob Faibussowitsch { 6580e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6590e33faafSMatthew G. Knepley PetscBool useNatural; 6600e33faafSMatthew G. Knepley 6610e33faafSMatthew G. Knepley PetscFunctionBegin; 6620e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6639566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6649566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6659566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6660e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6679566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6680e33faafSMatthew G. Knepley if (useNatural) { 6690e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6700e33faafSMatthew G. Knepley 6719566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6729566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6739566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6749566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 675cd0c2139SMatthew G Knepley } 6763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 677cd0c2139SMatthew G Knepley } 678cd0c2139SMatthew G Knepley 679d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 680d71ae5a4SJacob Faibussowitsch { 681d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 682cd0c2139SMatthew G Knepley 683cd0c2139SMatthew G Knepley PetscFunctionBegin; 6849566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 685cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6869566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 687cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 688cd0c2139SMatthew G Knepley DMLabel label, newlabel; 689cd0c2139SMatthew G Knepley const char *lname; 690fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 691cd0c2139SMatthew G Knepley IS valueIS; 692cd0c2139SMatthew G Knepley const PetscInt *values; 693cd0c2139SMatthew G Knepley PetscInt numValues, val; 694cd0c2139SMatthew G Knepley 6959566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 697cd0c2139SMatthew G Knepley if (isDepth) continue; 6989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 699fa8e8ae5SToby Isaac if (isDim) continue; 7009566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 7019566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 7029566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 7039566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &val)); 7049566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, val)); 7059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 7069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 7079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 708cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 709cd0c2139SMatthew G Knepley IS pointIS; 710cd0c2139SMatthew G Knepley const PetscInt *points; 711cd0c2139SMatthew G Knepley PetscInt numPoints, p; 712cd0c2139SMatthew G Knepley 7139566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 7149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 7159566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 716cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 7172582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 718cd0c2139SMatthew G Knepley 7199566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 720cd0c2139SMatthew G Knepley } 7219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 7229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 723cd0c2139SMatthew G Knepley } 7249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 7259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 726cd0c2139SMatthew G Knepley } 7273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 728d56405f8SMatthew G. Knepley } 729d56405f8SMatthew G. Knepley 730d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 731d71ae5a4SJacob Faibussowitsch { 732d56405f8SMatthew G. Knepley PetscSF sfPoint; 733d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 734d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 735d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 736d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 737d56405f8SMatthew G. Knepley PetscMPIInt rank; 738d56405f8SMatthew G. Knepley 739d56405f8SMatthew G. Knepley PetscFunctionBegin; 740cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7429566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7439566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7449566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7459566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7469566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7479566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 748d56405f8SMatthew G. Knepley if (createGhostLabel) { 7499566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7509566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 751d56405f8SMatthew G. Knepley } 752cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 75348a46eb9SPierre Jolivet for (; c < leafLocal[l] && c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 754cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 755cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7569566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 7571baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 758cd0c2139SMatthew G Knepley } 75948a46eb9SPierre Jolivet for (; c < cEnd; ++c) PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 760d56405f8SMatthew G. Knepley if (ghostLabel) { 7619566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 762cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 763cd0c2139SMatthew G Knepley PetscInt numCells; 764cd0c2139SMatthew G Knepley 7659566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 766cd0c2139SMatthew G Knepley if (numCells < 2) { 7679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 768cd0c2139SMatthew G Knepley } else { 769cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 770cd0c2139SMatthew G Knepley PetscInt vA, vB; 771cd0c2139SMatthew G Knepley 7729566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7739566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7759566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 776cd0c2139SMatthew G Knepley } 777cd0c2139SMatthew G Knepley } 778d56405f8SMatthew G. Knepley } 7793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 780cd0c2139SMatthew G Knepley } 781cd0c2139SMatthew G Knepley 782d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 783d71ae5a4SJacob Faibussowitsch { 784ca04dac2SToby Isaac DM refTree; 785ca04dac2SToby Isaac PetscSection pSec; 786ca04dac2SToby Isaac PetscInt *parents, *childIDs; 787ca04dac2SToby Isaac 788ca04dac2SToby Isaac PetscFunctionBegin; 7899566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm, &refTree)); 7909566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew, refTree)); 7919566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm, &pSec, &parents, &childIDs, NULL, NULL)); 792ca04dac2SToby Isaac if (pSec) { 7932582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 794fb4630b5SToby Isaac PetscInt *childIDsShifted; 795ca04dac2SToby Isaac PetscSection pSecShifted; 796ca04dac2SToby Isaac 7979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec, &pStart, &pEnd)); 7989566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 7992582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 8002582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 8019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted, &parentsShifted, pEndShifted - pStartShifted, &childIDsShifted)); 8029566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew), &pSecShifted)); 8039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted, pStartShifted, pEndShifted)); 804ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 805fb4630b5SToby Isaac /* start off assuming no children */ 8069566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, p, 0)); 807fb4630b5SToby Isaac } 808fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 809fb4630b5SToby Isaac PetscInt dof; 810fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 811ca04dac2SToby Isaac 8129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 8139566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted, pNew, dof)); 814ca04dac2SToby Isaac } 8159566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 816fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 817fb4630b5SToby Isaac PetscInt dof; 818fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p, depth, depthShift); 819fb4630b5SToby Isaac 8209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec, p, &dof)); 821fb4630b5SToby Isaac if (dof) { 822fb4630b5SToby Isaac PetscInt off, offNew; 823fb4630b5SToby Isaac 8249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec, p, &off)); 8259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted, pNew, &offNew)); 826fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off], depth, depthShift); 827fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 828fb4630b5SToby Isaac } 829fb4630b5SToby Isaac } 8309566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew, pSecShifted, parentsShifted, childIDsShifted)); 8319566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted, childIDsShifted)); 8329566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 833ca04dac2SToby Isaac } 8343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 835ca04dac2SToby Isaac } 836ca04dac2SToby Isaac 837d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 838d71ae5a4SJacob Faibussowitsch { 839da97024aSMatthew G. Knepley PetscSF sf; 840cd0c2139SMatthew G Knepley IS valueIS; 841da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 842cd0c2139SMatthew G Knepley PetscInt *depthShift; 8432582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 8444fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 845cd0c2139SMatthew G Knepley 846cd0c2139SMatthew G Knepley PetscFunctionBegin; 8479566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 849da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8509566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 851cd0c2139SMatthew G Knepley /* Count ghost cells */ 8529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8554a6cfa73SMatthew G. Knepley Ng = 0; 856cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 85746c796b9SMatthew G. Knepley IS faceIS; 85846c796b9SMatthew G. Knepley const PetscInt *faces; 85946c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 860cd0c2139SMatthew G Knepley 8619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8629566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8639566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 86446c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 865ca04dac2SToby Isaac PetscInt numChildren; 866ca04dac2SToby Isaac 8679566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8689566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 869ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 870ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87146c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 87246c796b9SMatthew G. Knepley } 8734a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8749566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8759566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 876cd0c2139SMatthew G Knepley } 8779566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * (depth + 1), &depthShift)); 8792582d50cSToby Isaac for (d = 0; d <= depth; d++) { 88059eef20bSToby Isaac PetscInt dEnd; 8812582d50cSToby Isaac 8829566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &dEnd)); 88359eef20bSToby Isaac depthShift[2 * d] = dEnd; 8842582d50cSToby Isaac depthShift[2 * d + 1] = 0; 8852582d50cSToby Isaac } 8862582d50cSToby Isaac if (depth >= 0) depthShift[2 * depth + 1] = Ng; 8879566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 8889566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 889cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8909566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 89148a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetConeSize(gdm, c, 1)); 892cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 893cd0c2139SMatthew G Knepley IS faceIS; 894cd0c2139SMatthew G Knepley const PetscInt *faces; 895cd0c2139SMatthew G Knepley PetscInt numFaces, f; 896cd0c2139SMatthew G Knepley 8979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8999566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 900cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 901ca04dac2SToby Isaac PetscInt size, numChildren; 902cd0c2139SMatthew G Knepley 9039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9049566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 905ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90646c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9079566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 90863a3b9bcSJacob Faibussowitsch PetscCheck(size == 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 9099566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 910cd0c2139SMatthew G Knepley } 9119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 913cd0c2139SMatthew G Knepley } 914cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 9159566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 9169566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 917cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 918cd0c2139SMatthew G Knepley ghostCell = cEnd; 919cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 920cd0c2139SMatthew G Knepley IS faceIS; 921cd0c2139SMatthew G Knepley const PetscInt *faces; 922cd0c2139SMatthew G Knepley PetscInt numFaces, f; 923cd0c2139SMatthew G Knepley 9249566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 9259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 9269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 92746c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 928ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 929cd0c2139SMatthew G Knepley 9309566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 9319566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm, faces[f], &numChildren, NULL)); 932ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 93346c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9349566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9359566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 93646c796b9SMatthew G. Knepley ++ghostCell; 937cd0c2139SMatthew G Knepley } 9389566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 940cd0c2139SMatthew G Knepley } 9419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9439566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9449566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9459566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9469566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9479566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9489566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 94948a46eb9SPierre Jolivet for (c = cEnd; c < cEnd + Ng; ++c) PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 950966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9514fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 9524fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(gdm, maxCell, Lstart, L)); 9534a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 9543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 955cd0c2139SMatthew G Knepley } 956cd0c2139SMatthew G Knepley 957cd0c2139SMatthew G Knepley /*@C 958cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 959cd0c2139SMatthew G Knepley 960cd0c2139SMatthew G Knepley Collective on dm 961cd0c2139SMatthew G Knepley 962cd0c2139SMatthew G Knepley Input Parameters: 963cd0c2139SMatthew G Knepley + dm - The original DM 964cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 965cd0c2139SMatthew G Knepley 966cd0c2139SMatthew G Knepley Output Parameters: 967cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 968cd0c2139SMatthew G Knepley - dmGhosted - The new DM 969cd0c2139SMatthew G Knepley 970cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 971cd0c2139SMatthew G Knepley 972cd0c2139SMatthew G Knepley Level: developer 973cd0c2139SMatthew G Knepley 974db781477SPatrick Sanan .seealso: `DMCreate()` 97531266bc0SMatthew G. Knepley @*/ 976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 977d71ae5a4SJacob Faibussowitsch { 978cd0c2139SMatthew G Knepley DM gdm; 979cd0c2139SMatthew G Knepley DMLabel label; 980cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 981412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 982b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 983cd0c2139SMatthew G Knepley 984cd0c2139SMatthew G Knepley PetscFunctionBegin; 985cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 986dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 987cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9889566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9899566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9909566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9919566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9929566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9939566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 995cd0c2139SMatthew G Knepley if (!label) { 996cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9979566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9989566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9999566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 1000cd0c2139SMatthew G Knepley } 10019566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 10029566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 10035de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 1004cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 1005d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 1006cd0c2139SMatthew G Knepley *dmGhosted = gdm; 10073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1008cd0c2139SMatthew G Knepley } 1009cd0c2139SMatthew G Knepley 1010d71ae5a4SJacob Faibussowitsch static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 1011d71ae5a4SJacob Faibussowitsch { 1012accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 1013accc9626SMatthew G. Knepley 1014accc9626SMatthew G. Knepley PetscFunctionBegin; 1015accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1016accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 101748a46eb9SPierre Jolivet for (d = 0; d < dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 1018accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 1019accc9626SMatthew G. Knepley PetscInt cell = -1; 1020accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1021accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 1022accc9626SMatthew G. Knepley 1023accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 1024accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 1025accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1026accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 1027accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1028accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1029accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1030accc9626SMatthew G. Knepley PetscInt clval; 1031accc9626SMatthew G. Knepley 1032accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1033accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1034accc9626SMatthew G. Knepley if (clval == -1) { 1035accc9626SMatthew G. Knepley const PetscInt *cone; 1036accc9626SMatthew G. Knepley PetscInt coneSize, c; 1037accc9626SMatthew G. Knepley 1038accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1039accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1040accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1041accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1042accc9626SMatthew G. Knepley PetscInt cpval; 1043accc9626SMatthew G. Knepley 1044accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1045accc9626SMatthew G. Knepley if (cpval != -1) { 1046accc9626SMatthew G. Knepley PetscInt dep; 1047accc9626SMatthew G. Knepley 1048accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1049accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift + dep) : shift + dep; 1050accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1051accc9626SMatthew G. Knepley break; 1052accc9626SMatthew G. Knepley } 1053accc9626SMatthew G. Knepley } 1054accc9626SMatthew G. Knepley } 1055accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1056accc9626SMatthew G. Knepley if (d == dim - 1 && clval != -1) { 1057accc9626SMatthew G. Knepley const PetscInt *support; 1058accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1059accc9626SMatthew G. Knepley 1060accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1061accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1062accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1063accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1064accc9626SMatthew G. Knepley if (nval == -1) { 1065accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval - 1 : clval + 1)); 1066accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1067accc9626SMatthew G. Knepley } 1068accc9626SMatthew G. Knepley } 1069accc9626SMatthew G. Knepley } 1070accc9626SMatthew G. Knepley } 1071accc9626SMatthew G. Knepley } 1072accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1073accc9626SMatthew G. Knepley } 1074accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 10753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1076accc9626SMatthew G. Knepley } 1077accc9626SMatthew G. Knepley 1078accc9626SMatthew G. Knepley typedef struct { 1079accc9626SMatthew G. Knepley DM dm; 1080accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1081accc9626SMatthew G. Knepley } PointDivision; 1082accc9626SMatthew G. Knepley 1083d71ae5a4SJacob Faibussowitsch static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1084d71ae5a4SJacob Faibussowitsch { 1085accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *)ctx; 1086accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val - 1 : val + 1; 1087accc9626SMatthew G. Knepley const PetscInt *support; 1088accc9626SMatthew G. Knepley PetscInt supportSize, s; 1089accc9626SMatthew G. Knepley 1090accc9626SMatthew G. Knepley PetscFunctionBegin; 1091accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1092accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1093accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1094accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1095accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1096accc9626SMatthew G. Knepley } 10973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1098accc9626SMatthew G. Knepley } 1099accc9626SMatthew G. Knepley 1100accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1101d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1102d71ae5a4SJacob Faibussowitsch { 1103accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1104accc9626SMatthew G. Knepley PointDivision div; 1105accc9626SMatthew G. Knepley PetscSF pointSF; 1106accc9626SMatthew G. Knepley IS pointIS; 1107accc9626SMatthew G. Knepley const PetscInt *points; 1108accc9626SMatthew G. Knepley PetscBool empty; 1109accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1110accc9626SMatthew G. Knepley 1111accc9626SMatthew G. Knepley PetscFunctionBegin; 1112accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1113accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1114accc9626SMatthew G. Knepley div.dm = dm; 1115accc9626SMatthew G. Knepley div.queue = queue; 1116accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1117accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift + dim, &pointIS)); 1118accc9626SMatthew G. Knepley if (pointIS) { 1119accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1120accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 112148a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1122accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1123accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1124accc9626SMatthew G. Knepley } 1125accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift + dim), &pointIS)); 1126accc9626SMatthew G. Knepley if (pointIS) { 1127accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1128accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 112948a46eb9SPierre Jolivet for (i = 0; i < n; ++i) PetscCall(DMPlexPointQueueEnqueue(queue, points[i])); 1130accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1131accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1132accc9626SMatthew G. Knepley } 1133accc9626SMatthew G. Knepley 1134accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1135accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1136accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1137accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1138accc9626SMatthew G. Knepley while (!empty) { 1139accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1140accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1141accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject)dm, queue, &empty)); 1142accc9626SMatthew G. Knepley } 1143accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1144accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 11453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1146accc9626SMatthew G. Knepley } 1147accc9626SMatthew G. Knepley 1148607ab7a9SMatthew G. Knepley /* 1149faedd622SMatthew G. Knepley We are adding three kinds of points here: 1150607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1151faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1152b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1153607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1154a6ae58d1SMatthew G. Knepley 1155a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1156a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1157607ab7a9SMatthew G. Knepley */ 1158d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1159d71ae5a4SJacob Faibussowitsch { 1160cd0c2139SMatthew G Knepley MPI_Comm comm; 1161607ab7a9SMatthew G. Knepley IS valueIS; 1162607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1163607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 116418c5995bSMatthew G. Knepley IS *splitIS; 116518c5995bSMatthew G. Knepley IS *unsplitIS; 1166b6dfa339SMatthew G. Knepley IS ghostIS; 1167607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 116818c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 116936dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 117036dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1171b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1172607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 117318c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1174b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1175cd0c2139SMatthew G Knepley PetscSection coordSection; 1176cd0c2139SMatthew G Knepley Vec coordinates; 1177cd0c2139SMatthew G Knepley PetscScalar *coords; 1178a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1179a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1180607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1181607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1182607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 118318c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1184cd0c2139SMatthew G Knepley 1185cd0c2139SMatthew G Knepley PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 11889566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 11899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1190412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 11919566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1192cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 11939566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 11949566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth + 1, &depthMax, depth + 1, &depthEnd, 2 * (depth + 1), &depthShift, depth + 1, &pMaxNew, depth + 1, &numHybridPointsOld)); 11959566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth + 1, &splitIS, depth + 1, &unsplitIS, depth + 1, &numSplitPoints, depth + 1, &numUnsplitPoints, depth + 1, &numHybridPoints, depth + 1, &splitPoints, depth + 1, &unsplitPoints)); 1196607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 11979566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 11989566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1199a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1200a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1201607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 120218c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1203607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1204a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1205607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 120618c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 120718c5995bSMatthew G. Knepley splitIS[d] = NULL; 120818c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 120959eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 121059eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 121159eef20bSToby Isaac depthShift[2 * d] = depthMax[d]; 121259eef20bSToby Isaac depthShift[2 * d + 1] = 0; 1213607ab7a9SMatthew G. Knepley } 1214b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1215b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1216cd0c2139SMatthew G Knepley if (label) { 12179566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 12189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 12199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1220cd0c2139SMatthew G Knepley } 1221cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1222cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1223cd0c2139SMatthew G Knepley 1224cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 12259566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 122618c5995bSMatthew G. Knepley if (splitIS[dep]) { 12279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 12289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 122918c5995bSMatthew G. Knepley } 12309566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2 + dep, &unsplitIS[dep])); 123118c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 12329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 12339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1234cd0c2139SMatthew G Knepley } 1235cd0c2139SMatthew G Knepley } 1236b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2 + dim - 1, &ghostIS)); 1237b6dfa339SMatthew G. Knepley if (ghostIS) { 1238b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1239b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1240b6dfa339SMatthew G. Knepley } 1241607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 124218c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d - 1] + numUnsplitPoints[d - 1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 12432582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2 * d + 1] = numSplitPoints[d] + numHybridPoints[d]; 12449566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth, depthShift)); 124559eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 124659eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 124759eef20bSToby Isaac * added points */ 12482582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d], depth, depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 12499566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1250cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1251cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1252cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1253cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12542582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12554c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1256cd0c2139SMatthew G Knepley const PetscInt *support; 1257394c2f0fSMatthew G. Knepley DMPolytopeType ct; 12584c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1259cd0c2139SMatthew G Knepley 12609566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12619566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 12629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12639566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 12649566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12659566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1266cd0c2139SMatthew G Knepley if (dep == depth - 1) { 12674c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 12684c367dbcSMatthew G. Knepley 1269cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 12709566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1271412e9a14SMatthew G. Knepley switch (coneSize) { 1272d71ae5a4SJacob Faibussowitsch case 2: 1273d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1274d71ae5a4SJacob Faibussowitsch break; 1275d71ae5a4SJacob Faibussowitsch case 3: 1276d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR)); 1277d71ae5a4SJacob Faibussowitsch break; 1278d71ae5a4SJacob Faibussowitsch case 4: 1279d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR)); 1280d71ae5a4SJacob Faibussowitsch break; 1281412e9a14SMatthew G. Knepley } 1282b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1283b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1284b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1285b6dfa339SMatthew G. Knepley const PetscInt *support; 1286b6dfa339SMatthew G. Knepley PetscInt val; 1287b6dfa339SMatthew G. Knepley 1288b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1289b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1290b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1291b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1292b6dfa339SMatthew G. Knepley } 1293cd0c2139SMatthew G Knepley } else if (dep == 0) { 12944c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1295cd0c2139SMatthew G Knepley 12969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12974c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1298cd0c2139SMatthew G Knepley PetscInt val; 1299cd0c2139SMatthew G Knepley 13009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13014c367dbcSMatthew G. Knepley if (val == 1) ++qf; 13024c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 13034c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1304cd0c2139SMatthew G Knepley } 13054c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 13069566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13074c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 13089566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13094c367dbcSMatthew G. Knepley /* Add hybrid edge */ 13109566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 13119566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13129566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1313cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 13144c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 13154c367dbcSMatthew G. Knepley 13169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 13174c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1318cd0c2139SMatthew G Knepley PetscInt val; 1319cd0c2139SMatthew G Knepley 13209566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 13214c367dbcSMatthew G. Knepley if (val == dim - 1) ++qf; 13224c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == (shift + dim - 1))) ++qn; 13234c367dbcSMatthew G. Knepley if ((val == dim - 1) || (val == -(shift + dim - 1))) ++qp; 1324cd0c2139SMatthew G Knepley } 13254c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 13269566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn + 1)); 13274c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 13289566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp + 1)); 13294c367dbcSMatthew G. Knepley /* Add hybrid face */ 13309566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13329566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1333cd0c2139SMatthew G Knepley } 1334cd0c2139SMatthew G Knepley } 1335cd0c2139SMatthew G Knepley } 133618c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 133718c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 133818c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 13392582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 134018c5995bSMatthew G. Knepley const PetscInt *support; 1341da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 134218c5995bSMatthew G. Knepley 13439566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13459566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 134618c5995bSMatthew G. Knepley if (dep == 0) { 134718c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 134818c5995bSMatthew G. Knepley 134939254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 135039254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 13519566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 135239254ff6SMatthew G. Knepley if (e >= 0) ++qf; 135339254ff6SMatthew G. Knepley } 13549566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 135518c5995bSMatthew G. Knepley /* Add hybrid edge */ 13569566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1357e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1358e1757548SMatthew G. Knepley PetscInt val; 1359e1757548SMatthew G. Knepley 13609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1361e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1362da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1363da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1364e1757548SMatthew G. Knepley } 13659566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 136718c5995bSMatthew G. Knepley } else if (dep == dim - 2) { 136818c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1369cd0c2139SMatthew G Knepley PetscInt val; 1370cd0c2139SMatthew G Knepley 1371da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13729566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1373da1dd7e4SMatthew G. Knepley if (val == dim - 1) qf += 2; 1374da1dd7e4SMatthew G. Knepley else ++qf; 1375cd0c2139SMatthew G Knepley } 137618c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 13779566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf + 2)); 137818c5995bSMatthew G. Knepley /* Add hybrid face */ 1379da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13809566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1381da1dd7e4SMatthew G. Knepley if (val == dim - 1) ++qf; 1382da1dd7e4SMatthew G. Knepley } 13839566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13859566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1386cd0c2139SMatthew G Knepley } 1387cd0c2139SMatthew G Knepley } 1388cd0c2139SMatthew G Knepley } 1389cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 13909566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 13919566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 13929566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 13939566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneNew, PetscMax(maxConeSize, maxConeSizeNew) * 3, &coneONew, PetscMax(maxSupportSize, maxSupportSizeNew), &supportNew)); 1394cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1395cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1396cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1397cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13982582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13994c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1400cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1401b5a892a1SMatthew G. Knepley DMPolytopeType ct; 14024c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1403cd0c2139SMatthew G Knepley 14049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 14059566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 14069566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 14079566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 14089566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 14099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1410cd0c2139SMatthew G Knepley if (dep == depth - 1) { 141196a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 14124c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1413cd0c2139SMatthew G Knepley const PetscInt *supportF; 1414cd0c2139SMatthew G Knepley 1415b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1416cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 14179566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 14189566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1419cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1420cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1421cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 14229566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 142318c5995bSMatthew G. Knepley if (v < 0) { 14249566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 142563a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 14262582d50cSToby Isaac coneNew[2 + q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 142796a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 142818c5995bSMatthew G. Knepley } else { 14294c367dbcSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep - 1]; 1430163235baSMatthew G. Knepley if (dep > 1) { 1431163235baSMatthew G. Knepley const PetscInt *econe; 1432163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1433163235baSMatthew G. Knepley 14349566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 14359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1436163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 14379566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep - 2], splitPoints[dep - 2], &vs)); 14389566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep - 2], unsplitPoints[dep - 2], &vu)); 1439163235baSMatthew G. Knepley if (vs >= 0) continue; 144063a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep - 2); 1441163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1442163235baSMatthew G. Knepley } 1443163235baSMatthew G. Knepley } 1444cd0c2139SMatthew G Knepley } 1445cd0c2139SMatthew G Knepley } 14469566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 14479566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1448e537020bSMatthew G. Knepley /* Face support */ 1449b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1450cd0c2139SMatthew G Knepley 1451b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1452b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1453b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1454b6dfa339SMatthew G. Knepley PetscCheck(vals[0] * vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1455b6dfa339SMatthew G. Knepley 1456b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1457b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1458b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1459b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1460accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1461b6dfa339SMatthew G. Knepley } else { 1462b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1463accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1464b6dfa339SMatthew G. Knepley } 1465b6dfa339SMatthew G. Knepley } else { 1466b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1467cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 14689566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1469cd0c2139SMatthew G Knepley } else { 1470cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 14719566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1472b6dfa339SMatthew G. Knepley } 1473b6dfa339SMatthew G. Knepley } 1474b6dfa339SMatthew G. Knepley } 1475b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1476e537020bSMatthew G. Knepley { 1477e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1478b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1479accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1480e537020bSMatthew G. Knepley 14819371c9d4SSatish Balay if (supportSize > 1) { 14829371c9d4SSatish Balay ocell = vals[0] < 0 ? support[1] : support[0]; 14839371c9d4SSatish Balay } else { 14849371c9d4SSatish Balay ocell = support[0]; 14859371c9d4SSatish Balay flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE; 14869371c9d4SSatish Balay } 1487b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1488b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1489e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1490e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1491e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1492b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc] + 1) : nconeO[nc]; 1493e537020bSMatthew G. Knepley break; 1494cd0c2139SMatthew G Knepley } 1495cd0c2139SMatthew G Knepley } 1496b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1497e537020bSMatthew G. Knepley } 14984c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1499b6dfa339SMatthew G. Knepley { 1500b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct) / 2; 1501b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1502b6dfa339SMatthew G. Knepley } 1503b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1504b5a892a1SMatthew G. Knepley 1505fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 15064c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15074c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1508e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1509412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1510b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q * 2 + 0]; 1511b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q * 2 + 1]; 1512b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1513412e9a14SMatthew G. Knepley 15149566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 151518c5995bSMatthew G. Knepley if (v < 0) { 15169566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 151718c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 151818c5995bSMatthew G. Knepley } else { 151918c5995bSMatthew G. Knepley coneNew[2 + q] = v + pMaxNew[dep] + numSplitPoints[dep]; 152018c5995bSMatthew G. Knepley } 1521b5a892a1SMatthew G. Knepley coneONew[2 + q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1522e537020bSMatthew G. Knepley } 15239566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 15249566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 152596a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 15269566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1527cd0c2139SMatthew G Knepley } else if (dep == 0) { 15284c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 1529cd0c2139SMatthew G Knepley 1530cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 15314c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1532cd0c2139SMatthew G Knepley PetscInt val; 1533cd0c2139SMatthew G Knepley 15349566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1535ad540459SPierre Jolivet if ((val == 1) || (val == (shift + 1))) supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1536cd0c2139SMatthew G Knepley } 15374c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 15389566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1539cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 15404c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1541cd0c2139SMatthew G Knepley PetscInt val, edge; 1542cd0c2139SMatthew G Knepley 15439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1544cd0c2139SMatthew G Knepley if (val == 1) { 15459566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 154663a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15474c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep + 1]; 1548cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 15492582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1550cd0c2139SMatthew G Knepley } 1551cd0c2139SMatthew G Knepley } 15524c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 15539566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15544c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1555cd0c2139SMatthew G Knepley coneNew[0] = newp; 1556cd0c2139SMatthew G Knepley coneNew[1] = splitp; 15579566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 15584c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15594c367dbcSMatthew G. Knepley PetscInt val, edge; 15604c367dbcSMatthew G. Knepley 15619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15624c367dbcSMatthew G. Knepley if (val == 1) { 15639566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 156463a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15654c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 15664c367dbcSMatthew G. Knepley } 15674c367dbcSMatthew G. Knepley } 15689566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1569cd0c2139SMatthew G Knepley } else if (dep == dim - 2) { 15704c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15714c367dbcSMatthew G. Knepley 1572cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1573cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1574cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 15759566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep - 1], splitPoints[dep - 1], &v)); 1576e1757548SMatthew G. Knepley if (v < 0) { 15779566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 157863a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep - 1); 15792582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1580e1757548SMatthew G. Knepley } else { 15814c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep - 1]; 1582cd0c2139SMatthew G Knepley } 1583e1757548SMatthew G. Knepley } 15849566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1585cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1586cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1587cd0c2139SMatthew G Knepley PetscInt val; 1588cd0c2139SMatthew G Knepley 15899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15904c367dbcSMatthew G. Knepley if (val == dim - 1) { 15912582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 15924c367dbcSMatthew G. Knepley } else if (val == (shift + dim - 1)) { 15932582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1594cd0c2139SMatthew G Knepley } 1595cd0c2139SMatthew G Knepley } 1596b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 15979566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1598cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1599cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1600cd0c2139SMatthew G Knepley PetscInt val, face; 1601cd0c2139SMatthew G Knepley 16029566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1603cd0c2139SMatthew G Knepley if (val == dim - 1) { 16049566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 160563a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16064c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep + 1]; 1607cd0c2139SMatthew G Knepley } else if (val == -(shift + dim - 1)) { 16082582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1609cd0c2139SMatthew G Knepley } 1610cd0c2139SMatthew G Knepley } 1611b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1]; 16129566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 16134c367dbcSMatthew G. Knepley /* Hybrid face */ 16144c367dbcSMatthew G. Knepley coneNew[0] = newp; 16154c367dbcSMatthew G. Knepley coneNew[1] = splitp; 16164c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 16174c367dbcSMatthew G. Knepley PetscInt vertex; 16189566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep - 1], splitPoints[dep - 1], &vertex)); 1619e1757548SMatthew G. Knepley if (vertex < 0) { 16209566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &vertex)); 162163a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep - 1); 1622e1757548SMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 1623e1757548SMatthew G. Knepley } else { 16244c367dbcSMatthew G. Knepley coneNew[2 + v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 16254c367dbcSMatthew G. Knepley } 1626e1757548SMatthew G. Knepley } 16279566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 16284c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 16294c367dbcSMatthew G. Knepley PetscInt val, face; 16304c367dbcSMatthew G. Knepley 16319566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 16324c367dbcSMatthew G. Knepley if (val == dim - 1) { 16339566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 163463a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 16354c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 16364c367dbcSMatthew G. Knepley } 16374c367dbcSMatthew G. Knepley } 16389566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1639cd0c2139SMatthew G Knepley } 1640cd0c2139SMatthew G Knepley } 1641cd0c2139SMatthew G Knepley } 164218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 164318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 164418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 16452582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1646b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1647e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 164818c5995bSMatthew G. Knepley 16499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 16509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 16519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 16529566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 165318c5995bSMatthew G. Knepley if (dep == 0) { 165418c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 165518c5995bSMatthew G. Knepley 165618c5995bSMatthew G. Knepley /* Unsplit vertex */ 16579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 165818c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 16592582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 16609566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep + 1], splitPoints[dep + 1], &e)); 1661ad540459SPierre Jolivet if (e >= 0) supportNew[q++] = e + pMaxNew[dep + 1]; 166218c5995bSMatthew G. Knepley } 166318c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 166418c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 166563a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew, comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 16669566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 166718c5995bSMatthew G. Knepley /* Hybrid edge */ 166818c5995bSMatthew G. Knepley coneNew[0] = newp; 166918c5995bSMatthew G. Knepley coneNew[1] = newp; 16709566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 167118c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 167218c5995bSMatthew G. Knepley PetscInt val, edge; 167318c5995bSMatthew G. Knepley 16749566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 167518c5995bSMatthew G. Knepley if (val == 1) { 16769566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep + 1], splitPoints[dep + 1], &edge)); 167763a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 167818c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1679e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 16809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep + 1], unsplitPoints[dep + 1], &edge)); 168163a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0, comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1682e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep + 2] + numSplitPoints[dep + 2] + numSplitPoints[dep + 1]; 168318c5995bSMatthew G. Knepley } 168418c5995bSMatthew G. Knepley } 16859566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1686e1757548SMatthew G. Knepley } else if (dep == dim - 2) { 1687e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep + 1] + numSplitPoints[dep + 1] + numSplitPoints[dep]; 1688e1757548SMatthew G. Knepley 1689da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1690e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1691e1757548SMatthew G. Knepley PetscInt val, face; 1692e1757548SMatthew G. Knepley 16939566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1694e1757548SMatthew G. Knepley if (val == dim - 1) { 16959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 169663a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0, comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 16972582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1698e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 1]; 1699e1757548SMatthew G. Knepley } else { 17002582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1701e1757548SMatthew G. Knepley } 1702e1757548SMatthew G. Knepley } 1703e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1704e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 17059566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 170663a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 17079566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1708e1757548SMatthew G. Knepley /* Add hybrid face */ 1709e1757548SMatthew G. Knepley coneNew[0] = newp; 1710212cc919SMatthew G. Knepley coneNew[1] = newp; 17119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 171263a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1713212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17149566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep - 1], unsplitPoints[dep - 1], &v)); 171563a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0, comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1716e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep - 1]; 17179566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1718da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1719da1dd7e4SMatthew G. Knepley PetscInt val, face; 1720da1dd7e4SMatthew G. Knepley 17219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1722da1dd7e4SMatthew G. Knepley if (val == dim - 1) { 17239566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep + 1], splitPoints[dep + 1], &face)); 1724da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep + 2] + numSplitPoints[dep + 2]; 1725da1dd7e4SMatthew G. Knepley } 1726da1dd7e4SMatthew G. Knepley } 17279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 172863a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 17299566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1730cd0c2139SMatthew G Knepley } 1731cd0c2139SMatthew G Knepley } 1732cd0c2139SMatthew G Knepley } 1733cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1734cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1735cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1736cd0c2139SMatthew G Knepley IS pIS; 1737cd0c2139SMatthew G Knepley PetscInt numPoints; 1738cd0c2139SMatthew G Knepley const PetscInt *points; 1739cd0c2139SMatthew G Knepley 1740cd0c2139SMatthew G Knepley if (dep >= 0) continue; 17419566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1742cd0c2139SMatthew G Knepley if (!pIS) continue; 1743cd0c2139SMatthew G Knepley dep = -dep - shift; 17449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 17459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1746cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1747cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 17482582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1749cd0c2139SMatthew G Knepley const PetscInt *cone; 1750cd0c2139SMatthew G Knepley PetscInt coneSize, c; 175150cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1752cd0c2139SMatthew G Knepley 1753cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1754cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 17559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 17569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1757cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1758e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c], depth, depthShift); 1759cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1760cd0c2139SMatthew G Knepley 17619566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1762cd0c2139SMatthew G Knepley if (val == dep - 1) { 17639566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep - 1], splitPoints[dep - 1], &cp)); 176463a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0, comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep - 1); 1765cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep - 1] + cp; 17669566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 176750cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1768cd0c2139SMatthew G Knepley } 1769cd0c2139SMatthew G Knepley } 17704a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 177128b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1772cd0c2139SMatthew G Knepley } 17739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 17749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1775cd0c2139SMatthew G Knepley } 1776fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 17779566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 17789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 17799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 17809566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1781cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 17822582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1783cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1784cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1785cd0c2139SMatthew G Knepley 17869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 17879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 17889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1789cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff + d] = coords[off + d]; 1790cd0c2139SMatthew G Knepley } 17919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1792fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 17939566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1794b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1795fa8e8ae5SToby Isaac /* Step 9: Labels */ 17969566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 17979566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 17989566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1799cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1800cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 18012582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1802cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1803cd0c2139SMatthew G Knepley PetscInt l; 1804cd0c2139SMatthew G Knepley 18057db7e0a7SMatthew G. Knepley if (splitLabel) { 18067db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 18077db7e0a7SMatthew G. Knepley 18089566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 18099566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 18107db7e0a7SMatthew G. Knepley } 1811cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1812cd0c2139SMatthew G Knepley DMLabel mlabel; 1813cd0c2139SMatthew G Knepley const char *lname; 1814cd0c2139SMatthew G Knepley PetscInt val; 18159a356370SMatthew G. Knepley PetscBool isDepth; 1816cd0c2139SMatthew G Knepley 18179566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 18189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 18199a356370SMatthew G. Knepley if (isDepth) continue; 18209566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 18219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 182248a46eb9SPierre Jolivet if (val >= 0) PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1823cd0c2139SMatthew G Knepley } 1824cd0c2139SMatthew G Knepley } 1825cd0c2139SMatthew G Knepley } 1826cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1827cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1828cd0c2139SMatthew G Knepley 1829cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 18309566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 18319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 18329566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 18339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1834cd0c2139SMatthew G Knepley } 1835b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1836b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1837cd0c2139SMatthew G Knepley if (label) { 18389566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 18399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1840cd0c2139SMatthew G Knepley } 18410d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 18429566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 184336dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 18440d4d4d06SMatthew G. Knepley } 18459566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 18469566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 18479566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 18483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1849cd0c2139SMatthew G Knepley } 1850cd0c2139SMatthew G Knepley 1851cd0c2139SMatthew G Knepley /*@C 1852cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1853cd0c2139SMatthew G Knepley 1854cd0c2139SMatthew G Knepley Collective on dm 1855cd0c2139SMatthew G Knepley 1856cd0c2139SMatthew G Knepley Input Parameters: 1857cd0c2139SMatthew G Knepley + dm - The original DM 185853156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1859cd0c2139SMatthew G Knepley 1860cd0c2139SMatthew G Knepley Output Parameters: 18617db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1862cd0c2139SMatthew G Knepley - dmSplit - The new DM 1863cd0c2139SMatthew G Knepley 1864cd0c2139SMatthew G Knepley Level: developer 1865cd0c2139SMatthew G Knepley 1866db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1867cd0c2139SMatthew G Knepley @*/ 1868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1869d71ae5a4SJacob Faibussowitsch { 1870cd0c2139SMatthew G Knepley DM sdm; 1871cd0c2139SMatthew G Knepley PetscInt dim; 1872cd0c2139SMatthew G Knepley 1873cd0c2139SMatthew G Knepley PetscFunctionBegin; 1874cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1875064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 18769566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 18779566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 18789566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18799566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1880cd0c2139SMatthew G Knepley switch (dim) { 1881cd0c2139SMatthew G Knepley case 2: 1882d71ae5a4SJacob Faibussowitsch case 3: 1883d71ae5a4SJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1884d71ae5a4SJacob Faibussowitsch break; 1885d71ae5a4SJacob Faibussowitsch default: 1886d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1887cd0c2139SMatthew G Knepley } 1888cd0c2139SMatthew G Knepley *dmSplit = sdm; 18893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1890cd0c2139SMatthew G Knepley } 1891cd0c2139SMatthew G Knepley 18920f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 1893d71ae5a4SJacob Faibussowitsch static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 1894d71ae5a4SJacob Faibussowitsch { 18950f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 18960f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 18970f66a230SMatthew G. Knepley 18980f66a230SMatthew G. Knepley PetscFunctionBegin; 18990f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 19009566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 19019566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 19029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 19039566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 19040f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 19050f66a230SMatthew G. Knepley if (cone[c] == face) { 19060f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 19070f66a230SMatthew G. Knepley 19080f66a230SMatthew G. Knepley if (subdm) { 19090f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 19100f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 19110f66a230SMatthew G. Knepley 19129566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 19139566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 19149566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 19159566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 19169566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 19170f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 19180f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 19190f66a230SMatthew G. Knepley o = subornt[0]; 19200f66a230SMatthew G. Knepley break; 19210f66a230SMatthew G. Knepley } 19220f66a230SMatthew G. Knepley } 192363a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 19240f66a230SMatthew G. Knepley } 19250f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 19260f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 19270f66a230SMatthew G. Knepley break; 19280f66a230SMatthew G. Knepley } 19290f66a230SMatthew G. Knepley } 193063a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 19313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19320f66a230SMatthew G. Knepley } 19330f66a230SMatthew G. Knepley 1934d71ae5a4SJacob Faibussowitsch static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 1935d71ae5a4SJacob Faibussowitsch { 1936accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 1937accc9626SMatthew G. Knepley const PetscInt *points; 1938accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 1939accc9626SMatthew G. Knepley 1940accc9626SMatthew G. Knepley PetscFunctionBegin; 1941accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1942accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 1943accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift + dim - 1, &facePosIS)); 1944accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift + dim - 1), &faceNegIS)); 1945accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 1946accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1947accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 19483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1949accc9626SMatthew G. Knepley } 1950accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 1951accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1952accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1953accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 1954accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 1955accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1956accc9626SMatthew G. Knepley const PetscInt point = points[p]; 1957accc9626SMatthew G. Knepley const PetscInt *support; 1958accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 1959accc9626SMatthew G. Knepley 1960accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1961accc9626SMatthew G. Knepley if (supportSize != 2) continue; 1962accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 1963accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 1964accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 1965accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 1966accc9626SMatthew G. Knepley if (valA * valB > 0) continue; 1967e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 1968e1a13daeSMatthew G. Knepley { 1969e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 1970e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 1971e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 1972e1a13daeSMatthew G. Knepley 1973e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1974e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1975e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 19769371c9d4SSatish Balay if ((valA >= 0) && (valA <= dim)) { 19779371c9d4SSatish Balay split = PETSC_TRUE; 19789371c9d4SSatish Balay break; 19799371c9d4SSatish Balay } 1980e1a13daeSMatthew G. Knepley } 1981e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1982e1a13daeSMatthew G. Knepley if (!split) continue; 1983e1a13daeSMatthew G. Knepley } 1984accc9626SMatthew G. Knepley /* Split the face */ 1985accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 1986accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 1987accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim - 1)); 1988accc9626SMatthew G. Knepley /* Label its closure: 1989accc9626SMatthew G. Knepley unmarked: label as unsplit 1990accc9626SMatthew G. Knepley incident: relabel as split 1991accc9626SMatthew G. Knepley split: do nothing 1992accc9626SMatthew G. Knepley */ 1993accc9626SMatthew G. Knepley { 1994accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1995accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 1996accc9626SMatthew G. Knepley 1997accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1998accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 1999accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 2000accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 2001accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2002accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2 + dep)); 2003accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2004accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 2005accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 2006accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 2007accc9626SMatthew G. Knepley } 2008accc9626SMatthew G. Knepley } 2009accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2010accc9626SMatthew G. Knepley } 2011accc9626SMatthew G. Knepley } 2012accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2013accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 20143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2015accc9626SMatthew G. Knepley } 2016accc9626SMatthew G. Knepley 2017cd0c2139SMatthew G Knepley /*@ 20180f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 2019cd0c2139SMatthew G Knepley to complete the surface 2020cd0c2139SMatthew G Knepley 2021cd0c2139SMatthew G Knepley Input Parameters: 2022cd0c2139SMatthew G Knepley + dm - The DM 20230f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 20240f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 2025caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary 2026bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 202747946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 2028cd0c2139SMatthew G Knepley 2029cd0c2139SMatthew G Knepley Output Parameter: 2030cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 2031cd0c2139SMatthew G Knepley 20320f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 20330f66a230SMatthew G. Knepley 2034cd0c2139SMatthew G Knepley Level: developer 2035cd0c2139SMatthew G Knepley 2036db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2037cd0c2139SMatthew G Knepley @*/ 2038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) 2039d71ae5a4SJacob Faibussowitsch { 2040d90583fdSMatthew G. Knepley DMLabel depthLabel; 2041accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 204247946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2043bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2044accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2045cd0c2139SMatthew G Knepley 2046cd0c2139SMatthew G Knepley PetscFunctionBegin; 20479566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 20489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20499566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 205047946fd8SMatthew G. Knepley if (subdm) { 20519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 205247946fd8SMatthew G. Knepley if (subpointIS) { 20539566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 20549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 205547946fd8SMatthew G. Knepley } 205647946fd8SMatthew G. Knepley } 2057d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 20589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2059accc9626SMatthew G. Knepley if (!dimIS) goto divide; 20609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 20619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2062d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2063cd0c2139SMatthew G Knepley const PetscInt *support; 2064cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2065cd0c2139SMatthew G Knepley 20669566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2067c4419245SMatthew G. Knepley #if 0 2068c4419245SMatthew G. Knepley if (supportSize != 2) { 2069c4419245SMatthew G. Knepley const PetscInt *lp; 2070c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2071c4419245SMatthew G. Knepley 2072c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2073c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 20749566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 20759566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 207663a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2077c4419245SMatthew G. Knepley } 2078c4419245SMatthew G. Knepley #endif 20799566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2080cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 20810f66a230SMatthew G. Knepley const PetscInt *cone; 2082cd0c2139SMatthew G Knepley PetscInt coneSize, c; 20830f66a230SMatthew G. Knepley PetscBool pos; 2084cd0c2139SMatthew G Knepley 20859566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 20869566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev * (shift + dim))); 20879566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev * (shift + dim))); 20880f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 20890f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 20909566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 20919566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2092cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2093cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2094cd0c2139SMatthew G Knepley 20959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2096cd0c2139SMatthew G Knepley if (val == -1) { 2097cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2098cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2099cd0c2139SMatthew G Knepley 21009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2101cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2102cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2103a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2104cd0c2139SMatthew G Knepley 21059566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 21069566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2107a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim - 1) && (bval < 0)) { 21089566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift + dim - 1 : -(shift + dim - 1))); 2109cd0c2139SMatthew G Knepley break; 2110cd0c2139SMatthew G Knepley } 2111cd0c2139SMatthew G Knepley } 21129566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2113cd0c2139SMatthew G Knepley } 2114cd0c2139SMatthew G Knepley } 2115cd0c2139SMatthew G Knepley } 2116cd0c2139SMatthew G Knepley } 2117accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2118accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2119a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 212086200784SMatthew G. Knepley if (blabel) { 2121accc9626SMatthew G. Knepley IS bdIS; 2122accc9626SMatthew G. Knepley 2123caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2124accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2125accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2126a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2127a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2128a0541d8aSMatthew G. Knepley PetscInt val, bval; 2129a0541d8aSMatthew G. Knepley 21309566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2131a0541d8aSMatthew G. Knepley if (bval >= 0) { 21329566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2133f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2134f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 21359566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2136f7019248SMatthew G. Knepley } 2137f7019248SMatthew G. Knepley } 2138f7019248SMatthew G. Knepley } 2139f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2140f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2141f7019248SMatthew G. Knepley PetscInt val, bval; 2142f7019248SMatthew G. Knepley 21439566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2144f7019248SMatthew G. Knepley if (bval >= 0) { 214586200784SMatthew G. Knepley const PetscInt *cone, *support; 214686200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 214786200784SMatthew G. Knepley 2148a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 21499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2150e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 21519566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 21529566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2 + val)); 21532c06a818SMatthew G. Knepley /* Check for cross-edge 21542c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 215586200784SMatthew G. Knepley if (val != 0) continue; 21569566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 21579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 215886200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 21599566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 21609566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 216163a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 21629566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 21639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 21649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 21659566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 216686200784SMatthew G. Knepley } 2167a0541d8aSMatthew G. Knepley } 2168a0541d8aSMatthew G. Knepley } 2169accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2170accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2171a0541d8aSMatthew G. Knepley } 2172b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2173b6dfa339SMatthew G. Knepley { 2174b6dfa339SMatthew G. Knepley PetscSF sf; 2175b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2176b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2177b6dfa339SMatthew G. Knepley 2178b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2179b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2180accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim - 1, &dimIS)); 2181accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2182accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2183accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2184b6dfa339SMatthew G. Knepley if (Nl > 0) { 2185b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2186b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2187b6dfa339SMatthew G. Knepley PetscInt val; 2188b6dfa339SMatthew G. Knepley 2189b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2190b6dfa339SMatthew G. Knepley if (l >= 0) { 2191b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2192b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2193b6dfa339SMatthew G. Knepley 2194b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2195b6dfa339SMatthew G. Knepley PetscCheck((val == dim - 1) || (val == shift2 + dim - 1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2196b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2197b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3 + val)); 2198b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2199accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize * 2; cl += 2) { 2200b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2201b6dfa339SMatthew G. Knepley 2202b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2203b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2204b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2205b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3 + val)); 2206b6dfa339SMatthew G. Knepley } 2207b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2208b6dfa339SMatthew G. Knepley } 2209b6dfa339SMatthew G. Knepley } 2210b6dfa339SMatthew G. Knepley } 2211b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2212b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2213accc9626SMatthew G. Knepley } 2214accc9626SMatthew G. Knepley divide: 2215b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2216accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2217accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 22183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2219cd0c2139SMatthew G Knepley } 2220cd0c2139SMatthew G Knepley 2221720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2222d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2223d71ae5a4SJacob Faibussowitsch { 2224720e594eSMatthew G. Knepley IS subpointIS; 2225720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2226720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2227720e594eSMatthew G. Knepley 2228720e594eSMatthew G. Knepley PetscFunctionBegin; 22293ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 22309566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 22319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 22323ba16761SJacob Faibussowitsch if (!subpointIS) PetscFunctionReturn(PETSC_SUCCESS); 22339566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 22349566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 22359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2236720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2237720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2238720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2239720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2240720e594eSMatthew G. Knepley 22419566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2242720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2243720e594eSMatthew G. Knepley PetscInt value = 0; 2244720e594eSMatthew G. Knepley 2245720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 22469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 22479371c9d4SSatish Balay if (value == defaultValue) { 22489371c9d4SSatish Balay invalidCell = PETSC_FALSE; 22499371c9d4SSatish Balay break; 22509371c9d4SSatish Balay } 2251720e594eSMatthew G. Knepley } 22529566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2253720e594eSMatthew G. Knepley if (invalidCell) { 22549566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 22559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 22569566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 225763a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2258720e594eSMatthew G. Knepley } 2259720e594eSMatthew G. Knepley } 22609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 22613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2262720e594eSMatthew G. Knepley } 2263720e594eSMatthew G. Knepley 2264c08575a3SMatthew G. Knepley /*@ 22653cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 22663cf72582SMatthew G. Knepley 22673cf72582SMatthew G. Knepley Collective on dm 22683cf72582SMatthew G. Knepley 22693cf72582SMatthew G. Knepley Input Parameters: 22703cf72582SMatthew G. Knepley + dm - The original DM 2271720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2272caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2273caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 22743cf72582SMatthew G. Knepley 22753cf72582SMatthew G. Knepley Output Parameters: 22767db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 22777db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2278720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2279720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 22803cf72582SMatthew G. Knepley 228140cdb708SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the division surface. For points 22826eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 22836eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 22846eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 22856eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 22866eccb800SMatthew Knepley 22876eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 228840cdb708SMatthew Knepley mesh. The label value is $\pm 100+dim$ for each point. For example, if two edges 10 and 14 in the hybrid resulting from 22896eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 22906eccb800SMatthew Knepley 22916eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 22926eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 22936eccb800SMatthew Knepley 22943cf72582SMatthew G. Knepley Level: developer 22953cf72582SMatthew G. Knepley 2296db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 22973cf72582SMatthew G. Knepley @*/ 2298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 2299d71ae5a4SJacob Faibussowitsch { 23003cf72582SMatthew G. Knepley DM idm; 23017db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 23023cf72582SMatthew G. Knepley PetscInt dim; 23033cf72582SMatthew G. Knepley 23043cf72582SMatthew G. Knepley PetscFunctionBegin; 23053cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 230692ef8ba2SVaclav Hapla if (label) PetscValidPointer(label, 2); 2307720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 230892ef8ba2SVaclav Hapla if (hybridLabel) PetscValidPointer(hybridLabel, 5); 230992ef8ba2SVaclav Hapla if (splitLabel) PetscValidPointer(splitLabel, 6); 231092ef8ba2SVaclav Hapla if (dmInterface) PetscValidPointer(dmInterface, 7); 231192ef8ba2SVaclav Hapla PetscValidPointer(dmHybrid, 8); 23129566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 23139566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 23149566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 23159566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 23169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 23179566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 23189566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 23197db7e0a7SMatthew G. Knepley if (splitLabel) { 23207db7e0a7SMatthew G. Knepley const char *name; 23217db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 23227db7e0a7SMatthew G. Knepley 23239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)hlabel, &name)); 2324*c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(sname, name, sizeof(sname))); 2325*c6a7a370SJeremy L Thompson PetscCall(PetscStrlcat(sname, " split", sizeof(sname))); 23269566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 23277db7e0a7SMatthew G. Knepley } 2328caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 23299371c9d4SSatish Balay if (dmInterface) { 23309371c9d4SSatish Balay *dmInterface = idm; 23319371c9d4SSatish Balay } else PetscCall(DMDestroy(&idm)); 23329566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 23335de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 23343cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 23359566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 23367db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 23374a7ee7d0SMatthew G. Knepley { 23384a7ee7d0SMatthew G. Knepley DM cdm; 23394a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 23404a7ee7d0SMatthew G. Knepley 23414a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 23429566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 23439566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 23449566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 23454a7ee7d0SMatthew G. Knepley } 23463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2347cd0c2139SMatthew G Knepley } 2348cd0c2139SMatthew G Knepley 2349efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2350efa14ee0SMatthew G Knepley 2351efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2352efa14ee0SMatthew G Knepley */ 2353d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2354d71ae5a4SJacob Faibussowitsch { 2355fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2356efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2357412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2358efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2359efa14ee0SMatthew G Knepley 2360efa14ee0SMatthew G Knepley PetscFunctionBegin; 2361efa14ee0SMatthew G Knepley *numFaces = 0; 2362efa14ee0SMatthew G Knepley *nFV = 0; 23639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 23649566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 236577d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 23669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 236748a46eb9SPierre Jolivet for (d = 0; d <= depth; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth - d, &pStart[d], &pEnd[d])); 2368efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 23699566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2370efa14ee0SMatthew G Knepley if (subvertexIS) { 23719566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2373efa14ee0SMatthew G Knepley } 2374efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2375efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23760298fd71SBarry Smith PetscInt *star = NULL; 2377efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2378efa14ee0SMatthew G Knepley 23799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2380efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2381efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2382efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2383efa14ee0SMatthew G Knepley } 2384efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2385efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 23860298fd71SBarry Smith PetscInt *closure = NULL; 2387efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2388efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2389efa14ee0SMatthew G Knepley 23909566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 239165560c7fSMatthew G Knepley if (cellLoc == 2) continue; 239263a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 23939566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2394efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2395efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2396efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2397efa14ee0SMatthew G Knepley 2398efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2399efa14ee0SMatthew G Knepley ++numCorners; 24009566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2401830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2402efa14ee0SMatthew G Knepley } 2403efa14ee0SMatthew G Knepley } 24049566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 240563a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2406efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2407007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2408007baee2SMatthew G. Knepley PetscInt numCells, nc; 2409007baee2SMatthew G. Knepley 2410efa14ee0SMatthew G Knepley ++(*numFaces); 241148a46eb9SPierre Jolivet for (cl = 0; cl < faceSize; ++cl) PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 24129566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 241348a46eb9SPierre Jolivet for (nc = 0; nc < numCells; ++nc) PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 24149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2415efa14ee0SMatthew G Knepley } 24169566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2417efa14ee0SMatthew G Knepley } 24189566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2419efa14ee0SMatthew G Knepley } 242048a46eb9SPierre Jolivet if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24229566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 24233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2424efa14ee0SMatthew G Knepley } 2425efa14ee0SMatthew G Knepley 2426d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2427d71ae5a4SJacob Faibussowitsch { 242834b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2429efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2430412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2431efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2432efa14ee0SMatthew G Knepley 2433efa14ee0SMatthew G Knepley PetscFunctionBegin; 24349566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 243648a46eb9SPierre Jolivet for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim - d, &pStart[d], &pEnd[d])); 2437efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 243834b4c39eSMatthew G. Knepley if (vertexLabel) { 24399566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2440efa14ee0SMatthew G Knepley if (subvertexIS) { 24419566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2443efa14ee0SMatthew G Knepley } 244434b4c39eSMatthew G. Knepley } 2445efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2446efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24470298fd71SBarry Smith PetscInt *star = NULL; 2448efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2449efa14ee0SMatthew G Knepley 24509566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2451efa14ee0SMatthew G Knepley for (s = 0; s < starSize * 2; s += 2) { 2452efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2453158acfadSMatthew G. Knepley PetscInt faceLoc; 2454158acfadSMatthew G. Knepley 2455158acfadSMatthew G. Knepley if ((point >= pStart[dim - 1]) && (point < pEnd[dim - 1])) { 2456158acfadSMatthew G. Knepley if (markedFaces) { 24579566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2458158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2459158acfadSMatthew G. Knepley } 2460158acfadSMatthew G. Knepley star[numFaces++] = point; 2461158acfadSMatthew G. Knepley } 2462efa14ee0SMatthew G Knepley } 2463efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2464efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 24650298fd71SBarry Smith PetscInt *closure = NULL; 2466efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2467efa14ee0SMatthew G Knepley PetscInt faceLoc; 2468efa14ee0SMatthew G Knepley 24699566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2470efa14ee0SMatthew G Knepley if (faceLoc == dim - 1) continue; 247163a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 24729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2473efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2474efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2475efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2476efa14ee0SMatthew G Knepley 2477efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 24789566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2479830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2480efa14ee0SMatthew G Knepley } 2481efa14ee0SMatthew G Knepley } 2482efa14ee0SMatthew G Knepley if (c == closureSize * 2) { 2483efa14ee0SMatthew G Knepley const PetscInt *support; 2484efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2485efa14ee0SMatthew G Knepley 2486efa14ee0SMatthew G Knepley for (c = 0; c < closureSize * 2; c += 2) { 2487efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2488efa14ee0SMatthew G Knepley 2489efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2490efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24919566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2492efa14ee0SMatthew G Knepley break; 2493efa14ee0SMatthew G Knepley } 2494efa14ee0SMatthew G Knepley } 2495efa14ee0SMatthew G Knepley } 24969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 24979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 249848a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2499efa14ee0SMatthew G Knepley } 25009566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2501efa14ee0SMatthew G Knepley } 25029566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2503efa14ee0SMatthew G Knepley } 25049566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 25059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 25069566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 25073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2508efa14ee0SMatthew G Knepley } 2509efa14ee0SMatthew G Knepley 2510d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2511d71ae5a4SJacob Faibussowitsch { 251227c04023SMatthew G. Knepley DMLabel label = NULL; 2513766ab985SMatthew G. Knepley const PetscInt *cone; 25149fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2515766ab985SMatthew G. Knepley 2516812bfc34SJed Brown PetscFunctionBegin; 2517c0ed958bSJed Brown *numFaces = 0; 2518c0ed958bSJed Brown *nFV = 0; 25199566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2520fed694aaSMatthew G. Knepley *subCells = NULL; 25219566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25229566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 25233ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 252427c04023SMatthew G. Knepley if (label) { 252527c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 252627c04023SMatthew G. Knepley PetscInt val; 252727c04023SMatthew G. Knepley 25289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 252927c04023SMatthew G. Knepley if (val == value) { 253027c04023SMatthew G. Knepley ++(*numFaces); 25319566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 253227c04023SMatthew G. Knepley } 253327c04023SMatthew G. Knepley } 253427c04023SMatthew G. Knepley } else { 2535766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 25369566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 253727c04023SMatthew G. Knepley } 25389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces * 2, subCells)); 25393ba16761SJacob Faibussowitsch if (!(*numFaces)) PetscFunctionReturn(PETSC_SUCCESS); 25409fc93327SToby Isaac *nFV = hasLagrange ? coneSize / 3 : coneSize / 2; 2541766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2542766ab985SMatthew G. Knepley const PetscInt *cells; 2543766ab985SMatthew G. Knepley PetscInt numCells; 2544766ab985SMatthew G. Knepley 254527c04023SMatthew G. Knepley if (label) { 254627c04023SMatthew G. Knepley PetscInt val; 254727c04023SMatthew G. Knepley 25489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 254927c04023SMatthew G. Knepley if (val != value) continue; 255027c04023SMatthew G. Knepley } 25519566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 255248a46eb9SPierre Jolivet for (p = 0; p < *nFV; ++p) PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2553766ab985SMatthew G. Knepley /* Negative face */ 25549566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 255527234c99SMatthew G. Knepley /* Not true in parallel 255608401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2557766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 25589566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 255927234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2560766ab985SMatthew G. Knepley } 25619566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2562766ab985SMatthew G. Knepley /* Positive face is not included */ 2563766ab985SMatthew G. Knepley } 25643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2565766ab985SMatthew G. Knepley } 2566766ab985SMatthew G. Knepley 2567d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2568d71ae5a4SJacob Faibussowitsch { 2569766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2570766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2571766ab985SMatthew G. Knepley 2572812bfc34SJed Brown PetscFunctionBegin; 25739566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25749566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 25753ba16761SJacob Faibussowitsch if (cMax < 0) PetscFunctionReturn(PETSC_SUCCESS); 25769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim + 1, &pStart, dim + 1, &pEnd)); 25779566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2578766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2579766ab985SMatthew G. Knepley const PetscInt *cone; 2580766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2581b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2582766ab985SMatthew G. Knepley 258327c04023SMatthew G. Knepley if (label) { 25849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 258527c04023SMatthew G. Knepley if (val != value) continue; 258627c04023SMatthew G. Knepley } 25879566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 25889566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 25899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 25901dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2591b3154360SMatthew G. Knepley /* Negative face */ 25929566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2593766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 2594766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2595766ab985SMatthew G. Knepley 2596766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2597766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25989566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2599766ab985SMatthew G. Knepley break; 2600766ab985SMatthew G. Knepley } 2601766ab985SMatthew G. Knepley } 2602766ab985SMatthew G. Knepley } 26039566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2604766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2605766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2606766ab985SMatthew G. Knepley const PetscInt *support; 2607766ab985SMatthew G. Knepley PetscInt supportSize, s; 2608766ab985SMatthew G. Knepley 26099566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 261008401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 26119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 261248a46eb9SPierre Jolivet for (s = 0; s < supportSize; ++s) PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2613766ab985SMatthew G. Knepley } 2614766ab985SMatthew G. Knepley } 26159566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 26163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2617766ab985SMatthew G. Knepley } 2618766ab985SMatthew G. Knepley 2619d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2620d71ae5a4SJacob Faibussowitsch { 262182f516ccSBarry Smith MPI_Comm comm; 2622e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2623e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2624e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2625e6ccafaeSMatthew G Knepley 262682f516ccSBarry Smith PetscFunctionBegin; 26279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 26289566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 262963a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2630e6ccafaeSMatthew G Knepley 2631ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2632ddeab2a6SMatthew G. Knepley /* Triangle */ 2633e6ccafaeSMatthew G Knepley faceSize = numCorners - 1; 2634e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2635ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2636ddeab2a6SMatthew G. Knepley /* Triangle */ 2637ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2638ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2639ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2640ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2641ddeab2a6SMatthew G. Knepley faceSize = numCorners - 1; 2642ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex % 2) ? PETSC_TRUE : PETSC_FALSE; 2643e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2644e6ccafaeSMatthew G Knepley /* Quadratic line */ 2645e6ccafaeSMatthew G Knepley faceSize = 1; 2646e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2647e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2648e6ccafaeSMatthew G Knepley /* Quads */ 2649e6ccafaeSMatthew G Knepley faceSize = 2; 2650e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2651e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2652e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2653e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2654e6ccafaeSMatthew G Knepley } else { 2655e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2656e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2657e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2658e6ccafaeSMatthew G Knepley } 2659e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2660e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2661e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2662e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2663e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2664e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2665e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2666e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2667e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2668e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2669e6ccafaeSMatthew G Knepley }; 2670e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2671e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2672e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2673e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2674e6ccafaeSMatthew G Knepley }; 2675e6ccafaeSMatthew G Knepley 2676e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 26779566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2678e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2679e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTri; 2680e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2681e6ccafaeSMatthew G Knepley 26829371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTriSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTriSorted[ii + 1])) { 2683e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2684e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2685e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii + fVertex]) { 2686e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2687e6ccafaeSMatthew G Knepley break; 2688e6ccafaeSMatthew G Knepley } 2689e6ccafaeSMatthew G Knepley } 2690e6ccafaeSMatthew G Knepley } 2691e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2692e6ccafaeSMatthew G Knepley break; 2693e6ccafaeSMatthew G Knepley } 2694e6ccafaeSMatthew G Knepley } 269528b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2696e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 26973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2698e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2699e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2700e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2701e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2702e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2703e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2704e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2705e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2706e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2707e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2708e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2709e6ccafaeSMatthew G Knepley }; 2710e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2711e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2712e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2713e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2714e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2715e6ccafaeSMatthew G Knepley }; 2716e6ccafaeSMatthew G Knepley 2717e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 27189566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2719e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2720e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuad; 2721e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2722e6ccafaeSMatthew G Knepley 27239371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadSorted[ii + 1])) { 2724e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2725e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2726e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii + fVertex]) { 2727e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2728e6ccafaeSMatthew G Knepley break; 2729e6ccafaeSMatthew G Knepley } 2730e6ccafaeSMatthew G Knepley } 2731e6ccafaeSMatthew G Knepley } 2732e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2733e6ccafaeSMatthew G Knepley break; 2734e6ccafaeSMatthew G Knepley } 2735e6ccafaeSMatthew G Knepley } 273628b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2737e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 27383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2739e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2740e6ccafaeSMatthew G Knepley /* Hexes 2741e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2742e6ccafaeSMatthew G Knepley pointing up at the second. 2743e6ccafaeSMatthew G Knepley 2744e6ccafaeSMatthew G Knepley 7---6 2745e6ccafaeSMatthew G Knepley /| /| 2746e6ccafaeSMatthew G Knepley 4---5 | 2747ddeab2a6SMatthew G. Knepley | 1-|-2 2748e6ccafaeSMatthew G Knepley |/ |/ 2749ddeab2a6SMatthew G. Knepley 0---3 2750e6ccafaeSMatthew G Knepley 2751e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2752e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2753e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2754e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2755e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2756e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2757e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2758ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2759ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2760ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2761ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2762e6ccafaeSMatthew G Knepley }; 2763e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2764ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2765e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2766ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2767ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2768ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2769ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2770e6ccafaeSMatthew G Knepley }; 2771e6ccafaeSMatthew G Knepley 2772e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 27739566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2774e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2775e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeHex; 2776e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2777e6ccafaeSMatthew G Knepley 27789371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesHexSorted[ii + 3])) { 2779e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2780e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2781e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii + fVertex]) { 2782e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2783e6ccafaeSMatthew G Knepley break; 2784e6ccafaeSMatthew G Knepley } 2785e6ccafaeSMatthew G Knepley } 2786e6ccafaeSMatthew G Knepley } 2787e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2788e6ccafaeSMatthew G Knepley break; 2789e6ccafaeSMatthew G Knepley } 2790e6ccafaeSMatthew G Knepley } 279128b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2792e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 27933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2794e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2795e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2796e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2797e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2798e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2799e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2800e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2801e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2802e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2803e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2804e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2805e6ccafaeSMatthew G Knepley }; 2806e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2807e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2808e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2809e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2810e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2811e6ccafaeSMatthew G Knepley }; 2812e6ccafaeSMatthew G Knepley 2813e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 28149566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2815e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2816e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeTet; 2817e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2818e6ccafaeSMatthew G Knepley 28199371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesTetSorted[ii + 0]) && (sortedIndices[1] == faceVerticesTetSorted[ii + 1]) && (sortedIndices[2] == faceVerticesTetSorted[ii + 2]) && (sortedIndices[3] == faceVerticesTetSorted[ii + 3])) { 2820e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2821e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2822e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii + fVertex]) { 2823e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2824e6ccafaeSMatthew G Knepley break; 2825e6ccafaeSMatthew G Knepley } 2826e6ccafaeSMatthew G Knepley } 2827e6ccafaeSMatthew G Knepley } 2828e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2829e6ccafaeSMatthew G Knepley break; 2830e6ccafaeSMatthew G Knepley } 2831e6ccafaeSMatthew G Knepley } 283228b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2833e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2835e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2836e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2837e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2838e6ccafaeSMatthew G Knepley pointing up at the second. 2839e6ccafaeSMatthew G Knepley 2840e6ccafaeSMatthew G Knepley 7---6 2841e6ccafaeSMatthew G Knepley /| /| 2842e6ccafaeSMatthew G Knepley 4---5 | 2843e6ccafaeSMatthew G Knepley | 3-|-2 2844e6ccafaeSMatthew G Knepley |/ |/ 2845e6ccafaeSMatthew G Knepley 0---1 2846e6ccafaeSMatthew G Knepley 2847e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2848e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2849e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2850e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2851e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2852e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2853e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2854e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2855e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2856e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2857e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2858e6ccafaeSMatthew G Knepley }; 2859e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2860e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2861e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2862e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2863e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2864e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2865e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2866e6ccafaeSMatthew G Knepley }; 2867e6ccafaeSMatthew G Knepley 2868e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 28699566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2870e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2871e6ccafaeSMatthew G Knepley const PetscInt ii = iFace * faceSizeQuadHex; 2872e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2873e6ccafaeSMatthew G Knepley 28749371c9d4SSatish Balay if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii + 0]) && (sortedIndices[1] == faceVerticesQuadHexSorted[ii + 1]) && (sortedIndices[2] == faceVerticesQuadHexSorted[ii + 2]) && (sortedIndices[3] == faceVerticesQuadHexSorted[ii + 3])) { 2875e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2876e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2877e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii + fVertex]) { 2878e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2879e6ccafaeSMatthew G Knepley break; 2880e6ccafaeSMatthew G Knepley } 2881e6ccafaeSMatthew G Knepley } 2882e6ccafaeSMatthew G Knepley } 2883e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2884e6ccafaeSMatthew G Knepley break; 2885e6ccafaeSMatthew G Knepley } 2886e6ccafaeSMatthew G Knepley } 288728b400f6SJacob Faibussowitsch PetscCheck(found, comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2888e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2890e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2891e6ccafaeSMatthew G Knepley if (!posOrient) { 28929566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2893e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize - 1 - f]; 2894e6ccafaeSMatthew G Knepley } else { 28959566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2896e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2897e6ccafaeSMatthew G Knepley } 2898e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2900e6ccafaeSMatthew G Knepley } 2901e6ccafaeSMatthew G Knepley 2902c08575a3SMatthew G. Knepley /*@ 2903c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2904c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2905c08575a3SMatthew G. Knepley 2906c08575a3SMatthew G. Knepley Not collective 2907c08575a3SMatthew G. Knepley 2908c08575a3SMatthew G. Knepley Input Parameters: 2909c08575a3SMatthew G. Knepley + dm - The original mesh 2910c08575a3SMatthew G. Knepley . cell - The cell mesh point 2911c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2912c08575a3SMatthew G. Knepley . face - The face vertices 2913c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2914c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2915c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2916c08575a3SMatthew G. Knepley 2917d8d19677SJose E. Roman Output Parameters: 2918c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2919c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2920c08575a3SMatthew G. Knepley 2921c08575a3SMatthew G. Knepley Level: developer 2922c08575a3SMatthew G. Knepley 2923db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 2924c08575a3SMatthew G. Knepley @*/ 2925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2926d71ae5a4SJacob Faibussowitsch { 29270298fd71SBarry Smith const PetscInt *cone = NULL; 2928e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2929e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2930e6ccafaeSMatthew G Knepley 2931e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29329566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 29339566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2934e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2935e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2936e6ccafaeSMatthew G Knepley 2937e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2938e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 29399371c9d4SSatish Balay found = PETSC_TRUE; 29409371c9d4SSatish Balay break; 2941e6ccafaeSMatthew G Knepley } 2942e6ccafaeSMatthew G Knepley } 2943e6ccafaeSMatthew G Knepley if (found) { 2944e6ccafaeSMatthew G Knepley indices[v2] = v; 2945e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2946e6ccafaeSMatthew G Knepley ++v2; 2947e6ccafaeSMatthew G Knepley } else { 2948e6ccafaeSMatthew G Knepley oppositeVertex = v; 2949e6ccafaeSMatthew G Knepley } 2950e6ccafaeSMatthew G Knepley } 29519566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 29523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2953e6ccafaeSMatthew G Knepley } 2954e6ccafaeSMatthew G Knepley 2955e6ccafaeSMatthew G Knepley /* 2956cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2957e6ccafaeSMatthew G Knepley 2958e6ccafaeSMatthew G Knepley Not collective 2959e6ccafaeSMatthew G Knepley 2960e6ccafaeSMatthew G Knepley Input Parameters: 2961e6ccafaeSMatthew G Knepley + dm - The DMPlex 2962e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2963e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2964e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2965e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2966e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2967e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2968e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2969e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2970e6ccafaeSMatthew G Knepley 2971e6ccafaeSMatthew G Knepley Output Parameters: 2972e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2973e6ccafaeSMatthew G Knepley 2974e6ccafaeSMatthew G Knepley Level: developer 2975e6ccafaeSMatthew G Knepley */ 2976d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2977d71ae5a4SJacob Faibussowitsch { 297882f516ccSBarry Smith MPI_Comm comm; 2979e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex *)subdm->data; 2980e6ccafaeSMatthew G Knepley const PetscInt *faces; 2981e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2982e6ccafaeSMatthew G Knepley 2983e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 29859566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 298663a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1, comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 2987e6ccafaeSMatthew G Knepley #if 0 2988e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 29899566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2990e6ccafaeSMatthew G Knepley #else 2991e6ccafaeSMatthew G Knepley { 2992e6ccafaeSMatthew G Knepley PetscInt f; 2993e6ccafaeSMatthew G Knepley 2994e6ccafaeSMatthew G Knepley numFaces = 0; 29959566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 2996e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2997e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2998e6ccafaeSMatthew G Knepley 29999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 30009566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 3001e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 3002e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 3003e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off + d]; 3004e6ccafaeSMatthew G Knepley PetscInt v; 3005e6ccafaeSMatthew G Knepley 3006e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3007e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 3008e6ccafaeSMatthew G Knepley } 3009e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 3010e6ccafaeSMatthew G Knepley } 3011e6ccafaeSMatthew G Knepley if (d == dof) { 3012e6ccafaeSMatthew G Knepley numFaces = 1; 3013e6ccafaeSMatthew G Knepley ((PetscInt *)faces)[0] = f; 3014e6ccafaeSMatthew G Knepley } 3015e6ccafaeSMatthew G Knepley } 3016e6ccafaeSMatthew G Knepley } 3017e6ccafaeSMatthew G Knepley #endif 301863a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1, comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3019f7d195e4SLawrence Mitchell if (numFaces == 1) { 3020e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 30219566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3022e6ccafaeSMatthew G Knepley } else { 3023e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3024e6ccafaeSMatthew G Knepley PetscBool posOriented; 3025e6ccafaeSMatthew G Knepley 30269566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3027e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3028e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices * 2]; 3029e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices * 3]; 30309566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3031e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3032e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3033e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3034e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3035e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3036e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3037e6ccafaeSMatthew G Knepley break; 3038e6ccafaeSMatthew G Knepley } 3039e6ccafaeSMatthew G Knepley } 304063a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices, comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3041e6ccafaeSMatthew G Knepley } 30429566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 30439566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 30449566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4 * numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3045e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3046e6ccafaeSMatthew G Knepley } 3047ef07cca7SMatthew G. Knepley #if 0 30489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3049ef07cca7SMatthew G. Knepley #else 30509566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **)&faces)); 3051ef07cca7SMatthew G. Knepley #endif 30523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3053e6ccafaeSMatthew G Knepley } 3054e6ccafaeSMatthew G Knepley 3055d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3056d71ae5a4SJacob Faibussowitsch { 305782f516ccSBarry Smith MPI_Comm comm; 305853156dfcSMatthew G. Knepley DMLabel subpointMap; 3059efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3060efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3061efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3062fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3063efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3064e6ccafaeSMatthew G Knepley 3065e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3067efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 30689566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 30699566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 30709566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 30719566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3072efa14ee0SMatthew G Knepley /* Setup chart */ 30739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 30749566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 30759566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 30769566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3077e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3078e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3079efa14ee0SMatthew G Knepley firstSubFace = numSubCells + numSubVertices; 3080e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 30819566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 30829566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 30839566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 30849566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 308548a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 308648a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 30879566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3088e6ccafaeSMatthew G Knepley /* Create face cones */ 30899566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 30909566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 30919566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3092e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3093e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3094efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30950298fd71SBarry Smith PetscInt *closure = NULL; 3096efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3097e6ccafaeSMatthew G Knepley 30989566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3099efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize * 2; cl += 2) { 3100efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3101e6ccafaeSMatthew G Knepley PetscInt subVertex; 3102e6ccafaeSMatthew G Knepley 3103efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3104efa14ee0SMatthew G Knepley ++numCorners; 31059566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3106efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3107efa14ee0SMatthew G Knepley closure[faceSize] = point; 310865560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex + subVertex; 3109e6ccafaeSMatthew G Knepley ++faceSize; 3110e6ccafaeSMatthew G Knepley } 3111e6ccafaeSMatthew G Knepley } 3112e6ccafaeSMatthew G Knepley } 311363a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV, comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 311448a46eb9SPierre Jolivet if (faceSize == nFV) PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 31159566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3116e6ccafaeSMatthew G Knepley } 31179566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 31189566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31199566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3120e6ccafaeSMatthew G Knepley /* Build coordinates */ 3121efa14ee0SMatthew G Knepley { 3122efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3123efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3124efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3125285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 312624640c55SToby Isaac const char *name; 3127efa14ee0SMatthew G Knepley 31289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 31299566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 31309566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 31319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 31329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 31339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 31349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3135efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3136efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3137efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3138efa14ee0SMatthew G Knepley PetscInt dof; 3139efa14ee0SMatthew G Knepley 31409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 31429566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3143e6ccafaeSMatthew G Knepley } 31449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 31459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 31469566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 31479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 31489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 31499566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 31509566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 3151830e53efSMatthew G. Knepley if (coordSize) { 31529566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 31539566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3154efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3155efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3156efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex + v; 3157efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3158e6ccafaeSMatthew G Knepley 31599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 31619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 31629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 316363a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3164e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3165e6ccafaeSMatthew G Knepley } 31669566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 31679566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 31683b399e24SMatthew G. Knepley } 31699566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 31709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3171e6ccafaeSMatthew G Knepley } 3172efa14ee0SMatthew G Knepley /* Cleanup */ 31739566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 31749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 31759566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 31769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 31773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3178e6ccafaeSMatthew G Knepley } 3179e6ccafaeSMatthew G Knepley 3180d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3181d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 3182d71ae5a4SJacob Faibussowitsch { 31833982b651SMatthew G. Knepley PetscInt subPoint; 31843982b651SMatthew G. Knepley PetscErrorCode ierr; 31853982b651SMatthew G. Knepley 31869371c9d4SSatish Balay ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 31879371c9d4SSatish Balay if (ierr) return -1; 31883982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + subPoint; 31893982b651SMatthew G. Knepley } 31903982b651SMatthew G. Knepley 3191d5b43468SJose E. Roman /* TODO: Fix this to properly propagate up error conditions it may find */ 3192d71ae5a4SJacob Faibussowitsch static inline PetscInt DMPlexFilterPointPerm_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[], const PetscInt subIndices[]) 3193d71ae5a4SJacob Faibussowitsch { 3194dd05d810SMatthew G. Knepley PetscInt subPoint; 3195dd05d810SMatthew G. Knepley PetscErrorCode ierr; 3196dd05d810SMatthew G. Knepley 3197dd05d810SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); 3198dd05d810SMatthew G. Knepley if (ierr) return -1; 3199dd05d810SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint + (subIndices ? subIndices[subPoint] : subPoint); 3200dd05d810SMatthew G. Knepley } 3201dd05d810SMatthew G. Knepley 3202d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3203d71ae5a4SJacob Faibussowitsch { 3204695799ffSMatthew G. Knepley DMLabel depthLabel; 3205212103e5SMatthew Knepley PetscInt Nl, l, d; 3206212103e5SMatthew Knepley 3207212103e5SMatthew Knepley PetscFunctionBegin; 3208695799ffSMatthew G. Knepley // Reset depth label for fast lookup 3209695799ffSMatthew G. Knepley PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 3210695799ffSMatthew G. Knepley PetscCall(DMLabelMakeAllInvalid_Internal(depthLabel)); 32119566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3212212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3213212103e5SMatthew Knepley DMLabel label, newlabel; 3214212103e5SMatthew Knepley const char *lname; 3215d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3216212103e5SMatthew Knepley IS valueIS; 3217212103e5SMatthew Knepley const PetscInt *values; 3218212103e5SMatthew Knepley PetscInt Nv, v; 3219212103e5SMatthew Knepley 32209566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 32219566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 32229566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 32239566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 32249566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3225d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 32269566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 32279566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 32289566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 32299566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 32309566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 32319566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 32329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 32339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3234212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3235212103e5SMatthew Knepley IS pointIS; 3236212103e5SMatthew Knepley const PetscInt *points; 3237212103e5SMatthew Knepley PetscInt Np, p; 3238212103e5SMatthew Knepley 32399566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 32409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 32419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3242212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3243212103e5SMatthew Knepley const PetscInt point = points[p]; 3244212103e5SMatthew Knepley PetscInt subp; 3245212103e5SMatthew Knepley 32469566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3247212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 32489566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3249212103e5SMatthew Knepley } 32509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 32519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3252212103e5SMatthew Knepley } 32539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 32549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3255212103e5SMatthew Knepley } 32563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3257212103e5SMatthew Knepley } 3258212103e5SMatthew Knepley 3259d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3260d71ae5a4SJacob Faibussowitsch { 326182f516ccSBarry Smith MPI_Comm comm; 326253156dfcSMatthew G. Knepley DMLabel subpointMap; 3263efa14ee0SMatthew G Knepley IS *subpointIS; 3264efa14ee0SMatthew G Knepley const PetscInt **subpoints; 32653982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3266dd05d810SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, sdim, cdim, p, d, v; 32670d366550SMatthew G. Knepley PetscMPIInt rank; 3268e6ccafaeSMatthew G Knepley 3269e6ccafaeSMatthew G Knepley PetscFunctionBegin; 32709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 32719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3272efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 32739566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 32749566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3275bec263e5SMatthew G. Knepley if (cellHeight) { 32769566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 32779566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3278bec263e5SMatthew G. Knepley } else { 3279bec263e5SMatthew G. Knepley DMLabel depth; 3280bec263e5SMatthew G. Knepley IS pointIS; 3281bec263e5SMatthew G. Knepley const PetscInt *points; 3282b85c8bf9SMatthew G. Knepley PetscInt numPoints = 0; 3283bec263e5SMatthew G. Knepley 32849566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 32859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3286b85c8bf9SMatthew G. Knepley if (pointIS) { 32879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 32889566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3289b85c8bf9SMatthew G. Knepley } 3290bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3291bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3292bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3293bec263e5SMatthew G. Knepley 32949566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3295bec263e5SMatthew G. Knepley for (c = 0; c < closureSize * 2; c += 2) { 32969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32979566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3298bec263e5SMatthew G. Knepley } 32999566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3300bec263e5SMatthew G. Knepley } 33019566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 33029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3303bec263e5SMatthew G. Knepley } 3304efa14ee0SMatthew G Knepley /* Setup chart */ 33059566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 3306dd05d810SMatthew G. Knepley PetscCall(DMGetCoordinateDim(dm, &cdim)); 33079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim + 1, &numSubPoints, dim + 1, &firstSubPoint, dim + 1, &subpointIS, dim + 1, &subpoints)); 3308e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33099566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3310e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3311e6ccafaeSMatthew G Knepley } 3312dd05d810SMatthew G. Knepley // Determine submesh dimension 3313dd05d810SMatthew G. Knepley PetscCall(DMGetDimension(subdm, &sdim)); 3314dd05d810SMatthew G. Knepley if (sdim > 0) { 3315dd05d810SMatthew G. Knepley // Calling function knows what dimension to use, and we include neighboring cells as well 3316dd05d810SMatthew G. Knepley sdim = dim; 3317dd05d810SMatthew G. Knepley } else { 3318dd05d810SMatthew G. Knepley // We reset the subdimension based on what is being selected 3319dd05d810SMatthew G. Knepley PetscInt lsdim; 3320dd05d810SMatthew G. Knepley for (lsdim = dim; lsdim >= 0; --lsdim) 3321dd05d810SMatthew G. Knepley if (numSubPoints[lsdim]) break; 33223ba16761SJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&lsdim, &sdim, 1, MPIU_INT, MPIU_MAX, comm)); 3323dd05d810SMatthew G. Knepley PetscCall(DMSetDimension(subdm, sdim)); 3324dd05d810SMatthew G. Knepley PetscCall(DMSetCoordinateDim(subdm, cdim)); 3325dd05d810SMatthew G. Knepley } 33269566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 33279566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3328e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3329dd05d810SMatthew G. Knepley firstSubPoint[sdim] = 0; 3330dd05d810SMatthew G. Knepley firstSubPoint[0] = firstSubPoint[sdim] + numSubPoints[sdim]; 3331dd05d810SMatthew G. Knepley if (sdim > 1) firstSubPoint[sdim - 1] = firstSubPoint[0] + numSubPoints[0]; 3332dd05d810SMatthew G. Knepley if (sdim > 2) firstSubPoint[sdim - 2] = firstSubPoint[sdim - 1] + numSubPoints[sdim - 1]; 3333dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 33349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 33359566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3336e6ccafaeSMatthew G Knepley } 3337412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 33389566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3339dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3340e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3341e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3342e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3343e6ccafaeSMatthew G Knepley const PetscInt *cone; 334415100a53SVaclav Hapla PetscInt coneSize; 3345e6ccafaeSMatthew G Knepley 33469566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3347dd05d810SMatthew G. Knepley if (cellHeight && (d == sdim)) { 334815100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 334915100a53SVaclav Hapla 33509566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3351e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3353e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3354e6ccafaeSMatthew G Knepley } 33559566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 33569566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 335715100a53SVaclav Hapla } else { 335815100a53SVaclav Hapla DMPolytopeType ct; 335915100a53SVaclav Hapla 336015100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 336115100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 336215100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3363e6ccafaeSMatthew G Knepley } 3364e6ccafaeSMatthew G Knepley } 3365e6ccafaeSMatthew G Knepley } 33669566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 33679566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3368e6ccafaeSMatthew G Knepley /* Set cones */ 33699566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 33709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize, &coneNew, maxConeSize, &orntNew)); 3371dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 3372e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3373e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3374e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 33750e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 33760d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3377e6ccafaeSMatthew G Knepley 3378dd05d810SMatthew G. Knepley if (d == sdim - 1) { 33790d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 33800d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 33810d366550SMatthew G. Knepley 33829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 33839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 33840d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3385064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3386412e9a14SMatthew G. Knepley 33879566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3388412e9a14SMatthew G. Knepley if (!isHybrid) continue; 33899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d + 1], subpoints[d + 1], &subc)); 33900d366550SMatthew G. Knepley if (subc >= 0) { 33910d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d + 1][subc]; 33920d366550SMatthew G. Knepley 33939566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 33949566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 33959566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 33960d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 33970d366550SMatthew G. Knepley if (cone[c] == point) { 33980d366550SMatthew G. Knepley fornt = ornt[c]; 33990d366550SMatthew G. Knepley break; 34000d366550SMatthew G. Knepley } 34010d366550SMatthew G. Knepley } 34020d366550SMatthew G. Knepley break; 34030d366550SMatthew G. Knepley } 34040d366550SMatthew G. Knepley } 34050d366550SMatthew G. Knepley } 34069566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 34079566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 34089566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 34099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3410e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 34119566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d - 1], subpoints[d - 1], &subc)); 341201a2673eSMatthew G. Knepley if (subc >= 0) { 341301a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d - 1] + subc; 34143982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 341501a2673eSMatthew G. Knepley ++coneSizeNew; 341601a2673eSMatthew G. Knepley } 3417e6ccafaeSMatthew G Knepley } 341863a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize, comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 34199566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 34209566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 34219566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3422e6ccafaeSMatthew G Knepley } 3423e6ccafaeSMatthew G Knepley } 34249566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew, orntNew)); 34259566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 34269566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3427e6ccafaeSMatthew G Knepley /* Build coordinates */ 3428e6ccafaeSMatthew G Knepley { 3429e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3430e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3431e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3432c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 343324640c55SToby Isaac const char *name; 3434e6ccafaeSMatthew G Knepley 34359566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 34369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 34379566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 34389566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 34399566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 34409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 34419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 34429566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0] + numSubPoints[0])); 3443e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3444e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3445e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3446e6ccafaeSMatthew G Knepley PetscInt dof; 3447e6ccafaeSMatthew G Knepley 34489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 34509566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3451e6ccafaeSMatthew G Knepley } 34529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 34539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 34549566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 34559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 34569566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 34579566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 34589566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 34599566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 34609566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 34619566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3462e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3463e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3464e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0] + v; 3465e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3466e6ccafaeSMatthew G Knepley 34679566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 34699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 34709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 347163a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3472efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3473e6ccafaeSMatthew G Knepley } 34749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 34759566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 34769566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 34779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3478e6ccafaeSMatthew G Knepley } 34793982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 34803982b651SMatthew G. Knepley { 34813982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 34823982b651SMatthew G. Knepley IS subpIS; 34833982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 34845033f954SMatthew G. Knepley PetscSFNode *sremotePoints = NULL, *newLocalPoints = NULL, *newOwners = NULL; 34855033f954SMatthew G. Knepley const PetscInt *localPoints, *subpoints, *rootdegree; 3486dd05d810SMatthew G. Knepley PetscInt *slocalPoints = NULL, *sortedPoints = NULL, *sortedIndices = NULL; 34875033f954SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl = 0, ll = 0, pStart, pEnd, p; 34885033f954SMatthew G. Knepley PetscMPIInt rank, size; 34893982b651SMatthew G. Knepley 34909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 34915033f954SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 34929566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 34939566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 34949566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 34959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 34969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 34973982b651SMatthew G. Knepley if (subpIS) { 3498dd05d810SMatthew G. Knepley PetscBool sorted = PETSC_TRUE; 3499dd05d810SMatthew G. Knepley 35009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 35019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 3502dd05d810SMatthew G. Knepley for (p = 1; p < numSubpoints; ++p) sorted = sorted && (subpoints[p] >= subpoints[p - 1]) ? PETSC_TRUE : PETSC_FALSE; 3503dd05d810SMatthew G. Knepley if (!sorted) { 3504dd05d810SMatthew G. Knepley PetscCall(PetscMalloc2(numSubpoints, &sortedPoints, numSubpoints, &sortedIndices)); 3505dd05d810SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) sortedIndices[p] = p; 3506dd05d810SMatthew G. Knepley PetscCall(PetscArraycpy(sortedPoints, subpoints, numSubpoints)); 3507dd05d810SMatthew G. Knepley PetscCall(PetscSortIntWithArray(numSubpoints, sortedPoints, sortedIndices)); 3508dd05d810SMatthew G. Knepley } 35093982b651SMatthew G. Knepley } 35109566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 35113982b651SMatthew G. Knepley if (numRoots >= 0) { 35125033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeBegin(sfPoint, &rootdegree)); 35135033f954SMatthew G. Knepley PetscCall(PetscSFComputeDegreeEnd(sfPoint, &rootdegree)); 35149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 35153982b651SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 35163982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 35173982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 35183982b651SMatthew G. Knepley } 35193982b651SMatthew G. Knepley /* Set subleaves */ 35203982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 35213982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3522dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 35233982b651SMatthew G. Knepley 35243982b651SMatthew G. Knepley if (subpoint < 0) continue; 35253982b651SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 35263982b651SMatthew G. Knepley newLocalPoints[point - pStart].index = subpoint; 35273982b651SMatthew G. Knepley ++numSubleaves; 35283982b651SMatthew G. Knepley } 35293982b651SMatthew G. Knepley /* Must put in owned subpoints */ 35303982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35313982b651SMatthew G. Knepley newOwners[p - pStart].rank = -3; 35323982b651SMatthew G. Knepley newOwners[p - pStart].index = -3; 35333982b651SMatthew G. Knepley } 3534d9384f27SMatthew G. Knepley for (p = 0; p < numSubpoints; ++p) { 35355033f954SMatthew G. Knepley /* Hold on to currently owned points */ 35365033f954SMatthew G. Knepley if (rootdegree[subpoints[p] - pStart]) newOwners[subpoints[p] - pStart].rank = rank + size; 35375033f954SMatthew G. Knepley else newOwners[subpoints[p] - pStart].rank = rank; 3538d9384f27SMatthew G. Knepley newOwners[subpoints[p] - pStart].index = p; 35393982b651SMatthew G. Knepley } 35409566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 35419566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 35429371c9d4SSatish Balay for (p = pStart; p < pEnd; ++p) 35439371c9d4SSatish Balay if (newOwners[p - pStart].rank >= size) newOwners[p - pStart].rank -= size; 35449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 35459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 35469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 35479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 35485033f954SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 35493982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 3550dd05d810SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPointPerm_Internal(point, 0, numSubpoints, sortedPoints ? sortedPoints : subpoints, sortedIndices); 35513982b651SMatthew G. Knepley 35523982b651SMatthew G. Knepley if (subpoint < 0) continue; 35539371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 35549371c9d4SSatish Balay ++ll; 35559371c9d4SSatish Balay continue; 35569371c9d4SSatish Balay } 35573982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 35583982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 35593982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 356063a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 356163a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 35623982b651SMatthew G. Knepley ++sl; 35633982b651SMatthew G. Knepley } 35641dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 35659566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 35669566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 35673982b651SMatthew G. Knepley } 356848a46eb9SPierre Jolivet if (subpIS) PetscCall(ISRestoreIndices(subpIS, &subpoints)); 3569dd05d810SMatthew G. Knepley PetscCall(PetscFree2(sortedPoints, sortedIndices)); 35703982b651SMatthew G. Knepley } 3571212103e5SMatthew Knepley /* Filter labels */ 35729566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3573efa14ee0SMatthew G Knepley /* Cleanup */ 3574dd05d810SMatthew G. Knepley for (d = 0; d <= sdim; ++d) { 35759566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 35769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3577e6ccafaeSMatthew G Knepley } 35789566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints, firstSubPoint, subpointIS, subpoints)); 35793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3580e6ccafaeSMatthew G Knepley } 3581e6ccafaeSMatthew G Knepley 3582d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 3583d71ae5a4SJacob Faibussowitsch { 35843982b651SMatthew G. Knepley PetscFunctionBegin; 35859566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 35863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35873982b651SMatthew G. Knepley } 35883982b651SMatthew G. Knepley 3589d0fa310fSMatthew G. Knepley /*@ 3590e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3591e6ccafaeSMatthew G Knepley 3592e6ccafaeSMatthew G Knepley Input Parameters: 3593e6ccafaeSMatthew G Knepley + dm - The original mesh 3594158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3595158acfadSMatthew G. Knepley . value - The label value to use 3596158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3597e6ccafaeSMatthew G Knepley 3598e6ccafaeSMatthew G Knepley Output Parameter: 3599e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3600e6ccafaeSMatthew G Knepley 3601e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3602e6ccafaeSMatthew G Knepley 3603e6ccafaeSMatthew G Knepley Level: developer 3604e6ccafaeSMatthew G Knepley 3605db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3606830e53efSMatthew G. Knepley @*/ 3607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3608d71ae5a4SJacob Faibussowitsch { 3609827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3610827c4036SVaclav Hapla PetscInt dim, cdim; 3611e6ccafaeSMatthew G Knepley 3612e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3613e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3614064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 36159566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 36169566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 36179566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 36189566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 36199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36209566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 36219566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 362208401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3623827c4036SVaclav Hapla if (interpolated) { 36249566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3625e6ccafaeSMatthew G Knepley } else { 36269566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3627e6ccafaeSMatthew G Knepley } 36285de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 36293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3630e6ccafaeSMatthew G Knepley } 3631e6ccafaeSMatthew G Knepley 3632d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3633d71ae5a4SJacob Faibussowitsch { 3634766ab985SMatthew G. Knepley MPI_Comm comm; 3635766ab985SMatthew G. Knepley DMLabel subpointMap; 3636766ab985SMatthew G. Knepley IS subvertexIS; 3637766ab985SMatthew G. Knepley const PetscInt *subVertices; 3638fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3639766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3640412e9a14SMatthew G. Knepley PetscInt c, f; 3641766ab985SMatthew G. Knepley 3642766ab985SMatthew G. Knepley PetscFunctionBegin; 36439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3644766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 36459566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 36469566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 36479566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 36489566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3649766ab985SMatthew G. Knepley /* Setup chart */ 36509566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 36519566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 36529566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells + numSubFaces + numSubVertices)); 36539566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3654766ab985SMatthew G. Knepley /* Set cone sizes */ 3655766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3656766ab985SMatthew G. Knepley firstSubFace = numSubCells + numSubVertices; 3657766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 36589566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 36599566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 366048a46eb9SPierre Jolivet for (c = 0; c < numSubCells; ++c) PetscCall(DMPlexSetConeSize(subdm, c, 1)); 366148a46eb9SPierre Jolivet for (f = firstSubFace; f < firstSubFace + numSubFaces; ++f) PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 36629566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3663766ab985SMatthew G. Knepley /* Create face cones */ 36649566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 36659566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 3666766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3667766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3668766ab985SMatthew G. Knepley const PetscInt subcell = c; 366987feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3670064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 367187feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3672766ab985SMatthew G. Knepley 36739566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3674412e9a14SMatthew G. Knepley if (!isHybrid) continue; 36759566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 367687feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 36779566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 367887feddfdSMatthew G. Knepley subface[v] = firstSubVertex + subVertex; 367987feddfdSMatthew G. Knepley } 36809566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 36819566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 36829566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 368327234c99SMatthew G. Knepley /* Not true in parallel 368408401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 368587feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 368687feddfdSMatthew G. Knepley PetscInt negsubcell; 3687064cae4fSPierre Jolivet PetscBool isHybrid = PETSC_FALSE; 3688766ab985SMatthew G. Knepley 36899566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3690412e9a14SMatthew G. Knepley if (isHybrid) continue; 369187feddfdSMatthew G. Knepley /* I know this is a crap search */ 369287feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 369387feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3694766ab985SMatthew G. Knepley } 369563a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 36969566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3697766ab985SMatthew G. Knepley } 36989566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 369987feddfdSMatthew G. Knepley ++newFacePoint; 3700766ab985SMatthew G. Knepley } 37019566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void **)&subface)); 37029566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 37039566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3704766ab985SMatthew G. Knepley /* Build coordinates */ 3705766ab985SMatthew G. Knepley { 3706766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3707766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3708766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3709c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 371024640c55SToby Isaac const char *name; 3711766ab985SMatthew G. Knepley 37129566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 37139566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 37149566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 37159566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 37169566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 37179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 37189566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 37199566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex + numSubVertices)); 3720766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3721766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3722766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3723766ab985SMatthew G. Knepley PetscInt dof; 3724766ab985SMatthew G. Knepley 37259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 37269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 37279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3728766ab985SMatthew G. Knepley } 37299566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 37309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 37319566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 37329566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates, &name)); 37339566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates, name)); 37349566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 37359566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 37369566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates, VECSTANDARD)); 37379566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 37389566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3739766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3740766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3741766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex + v; 3742766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3743766ab985SMatthew G. Knepley 37449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 37459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 37469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 37479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 374863a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof, comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3749766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff + d] = coords[off + d]; 3750766ab985SMatthew G. Knepley } 37519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 37529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 37539566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 37549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3755766ab985SMatthew G. Knepley } 3756aca35d17SMatthew G. Knepley /* Build SF */ 3757aca35d17SMatthew G. Knepley CHKMEMQ; 3758aca35d17SMatthew G. Knepley { 3759aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3760aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3761bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3762aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3763bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 376449c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells + numSubFaces + numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3765bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3766aca35d17SMatthew G. Knepley 37679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 37689566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 37699566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 37709566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 37719566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 37729566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3773aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3774aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 37759566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd - pStart, &newLocalPoints, numRoots, &newOwners)); 3776bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd - pStart; ++p) { 3777bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3778bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3779bdcf2095SMatthew G. Knepley } 37809e0823b2SMatthew G. Knepley /* Set subleaves */ 3781aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3782aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3783bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3784aca35d17SMatthew G. Knepley 378563a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3786bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3787bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].rank = rank; 3788bdcf2095SMatthew G. Knepley newLocalPoints[point - pStart].index = subPoint; 3789bdcf2095SMatthew G. Knepley ++numSubLeaves; 3790aca35d17SMatthew G. Knepley } 37919e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 37929e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 37939e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 37949e0823b2SMatthew G. Knepley 37959e0823b2SMatthew G. Knepley if (subPoint < 0) { 37969e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = -3; 37979e0823b2SMatthew G. Knepley newOwners[p - pStart].index = -3; 37989e0823b2SMatthew G. Knepley } else { 37999e0823b2SMatthew G. Knepley newOwners[p - pStart].rank = rank; 38009e0823b2SMatthew G. Knepley newOwners[p - pStart].index = subPoint; 38019e0823b2SMatthew G. Knepley } 3802bdcf2095SMatthew G. Knepley } 38039566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38049566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 38059566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38069566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints, MPI_REPLACE)); 38079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 38089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 380949c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3810bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3811bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3812aca35d17SMatthew G. Knepley 3813aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 38149371c9d4SSatish Balay if (newLocalPoints[point].rank == rank) { 38159371c9d4SSatish Balay ++ll; 38169371c9d4SSatish Balay continue; 38179371c9d4SSatish Balay } 3818aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3819bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3820bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 382163a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 382263a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3823aca35d17SMatthew G. Knepley ++sl; 3824aca35d17SMatthew G. Knepley } 38259566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints, newOwners)); 38261dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 38279566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3828aca35d17SMatthew G. Knepley } 3829aca35d17SMatthew G. Knepley } 3830aca35d17SMatthew G. Knepley CHKMEMQ; 3831766ab985SMatthew G. Knepley /* Cleanup */ 38329566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 38339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 38349566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 38353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3836766ab985SMatthew G. Knepley } 3837766ab985SMatthew G. Knepley 3838d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3839d71ae5a4SJacob Faibussowitsch { 38403982b651SMatthew G. Knepley DMLabel label = NULL; 3841766ab985SMatthew G. Knepley 3842766ab985SMatthew G. Knepley PetscFunctionBegin; 38439566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 38449566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 38453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3846766ab985SMatthew G. Knepley } 3847766ab985SMatthew G. Knepley 3848c08575a3SMatthew G. Knepley /*@C 38497d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3850766ab985SMatthew G. Knepley 3851766ab985SMatthew G. Knepley Input Parameters: 3852766ab985SMatthew G. Knepley + dm - The original mesh 385327c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 38547afc1a8bSJed Brown . label - A label name, or NULL 385527c04023SMatthew G. Knepley - value - A label value 3856766ab985SMatthew G. Knepley 3857766ab985SMatthew G. Knepley Output Parameter: 3858766ab985SMatthew G. Knepley . subdm - The surface mesh 3859766ab985SMatthew G. Knepley 3860766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3861766ab985SMatthew G. Knepley 3862766ab985SMatthew G. Knepley Level: developer 3863766ab985SMatthew G. Knepley 3864db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3865c08575a3SMatthew G. Knepley @*/ 3866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3867d71ae5a4SJacob Faibussowitsch { 3868c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3869766ab985SMatthew G. Knepley 3870766ab985SMatthew G. Knepley PetscFunctionBegin; 3871766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 387227c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 38739566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38749566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 38759566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 38769566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38779566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim - 1)); 38789566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 38799566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3880766ab985SMatthew G. Knepley if (depth == dim) { 38819566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3882766ab985SMatthew G. Knepley } else { 38839566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3884e6ccafaeSMatthew G Knepley } 38855de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 38863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3887e6ccafaeSMatthew G Knepley } 3888e6ccafaeSMatthew G Knepley 3889bec263e5SMatthew G. Knepley /*@ 3890bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3891bec263e5SMatthew G. Knepley 3892bec263e5SMatthew G. Knepley Input Parameters: 3893bec263e5SMatthew G. Knepley + dm - The original mesh 3894bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3895bec263e5SMatthew G. Knepley - value - The label value to use 3896bec263e5SMatthew G. Knepley 3897bec263e5SMatthew G. Knepley Output Parameter: 3898bec263e5SMatthew G. Knepley . subdm - The new mesh 3899bec263e5SMatthew G. Knepley 3900dd05d810SMatthew G. Knepley Notes: 3901dd05d810SMatthew G. Knepley This function produces a `DMLabel` mapping original points in the submesh to their depth. This can be obtained using `DMPlexGetSubpointMap()`. 3902bec263e5SMatthew G. Knepley 3903bec263e5SMatthew G. Knepley Level: developer 3904bec263e5SMatthew G. Knepley 3905dd05d810SMatthew G. Knepley .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()`, `DMPlexCreateSubmesh()` 3906bec263e5SMatthew G. Knepley @*/ 3907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3908d71ae5a4SJacob Faibussowitsch { 3909b47cd10cSMatthew G. Knepley PetscInt dim, overlap; 3910bec263e5SMatthew G. Knepley 3911bec263e5SMatthew G. Knepley PetscFunctionBegin; 3912bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3913064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 39149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 39159566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 39169566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 3917bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 39189566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 39195de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3920b47cd10cSMatthew G. Knepley // It is possible to obtain a surface mesh where some faces are in SF 3921b47cd10cSMatthew G. Knepley // We should either mark the mesh as having an overlap, or delete these from the SF 3922b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetOverlap(dm, &overlap)); 3923b47cd10cSMatthew G. Knepley if (!overlap) { 3924b47cd10cSMatthew G. Knepley PetscSF sf; 3925b47cd10cSMatthew G. Knepley const PetscInt *leaves; 3926b47cd10cSMatthew G. Knepley PetscInt cStart, cEnd, Nl; 3927b47cd10cSMatthew G. Knepley PetscBool hasSubcell = PETSC_FALSE, ghasSubcell; 3928b47cd10cSMatthew G. Knepley 3929b47cd10cSMatthew G. Knepley PetscCall(DMPlexGetHeightStratum(*subdm, 0, &cStart, &cEnd)); 3930b47cd10cSMatthew G. Knepley PetscCall(DMGetPointSF(*subdm, &sf)); 3931b47cd10cSMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 3932b47cd10cSMatthew G. Knepley for (PetscInt l = 0; l < Nl; ++l) { 3933b47cd10cSMatthew G. Knepley const PetscInt point = leaves ? leaves[l] : l; 3934b47cd10cSMatthew G. Knepley 3935b47cd10cSMatthew G. Knepley if (point >= cStart && point < cEnd) { 3936b47cd10cSMatthew G. Knepley hasSubcell = PETSC_TRUE; 3937b47cd10cSMatthew G. Knepley break; 3938b47cd10cSMatthew G. Knepley } 3939b47cd10cSMatthew G. Knepley } 3940b47cd10cSMatthew G. Knepley PetscCall(MPIU_Allreduce(&hasSubcell, &ghasSubcell, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 3941b47cd10cSMatthew G. Knepley if (ghasSubcell) PetscCall(DMPlexSetOverlap(*subdm, NULL, 1)); 3942b47cd10cSMatthew G. Knepley } 39433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3944bec263e5SMatthew G. Knepley } 3945bec263e5SMatthew G. Knepley 394664beef6dSMatthew G. Knepley /*@ 394764beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 394864beef6dSMatthew G. Knepley 394964beef6dSMatthew G. Knepley Input Parameter: 395064beef6dSMatthew G. Knepley . dm - The submesh DM 395164beef6dSMatthew G. Knepley 395264beef6dSMatthew G. Knepley Output Parameter: 395364beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 395464beef6dSMatthew G. Knepley 395564beef6dSMatthew G. Knepley Level: developer 395664beef6dSMatthew G. Knepley 3957db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 395864beef6dSMatthew G. Knepley @*/ 3959d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3960d71ae5a4SJacob Faibussowitsch { 3961e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3962e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3963e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 396465663942SMatthew G. Knepley *subpointMap = ((DM_Plex *)dm->data)->subpointMap; 39653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3966e6ccafaeSMatthew G Knepley } 3967e6ccafaeSMatthew G Knepley 3968c08575a3SMatthew G. Knepley /*@ 3969c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3970c08575a3SMatthew G. Knepley 3971c08575a3SMatthew G. Knepley Input Parameters: 3972c08575a3SMatthew G. Knepley + dm - The submesh DM 3973c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3974c08575a3SMatthew G. Knepley 3975c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3976c08575a3SMatthew G. Knepley 3977c08575a3SMatthew G. Knepley Level: developer 3978c08575a3SMatthew G. Knepley 3979db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 3980c08575a3SMatthew G. Knepley @*/ 3981d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3982d71ae5a4SJacob Faibussowitsch { 3983e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 3984285d324eSMatthew G. Knepley DMLabel tmp; 3985e6ccafaeSMatthew G Knepley 3986e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3987e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3988285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3989e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 39909566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mesh->subpointMap)); 39919566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 39923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3993e6ccafaeSMatthew G Knepley } 3994e6ccafaeSMatthew G Knepley 3995d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 3996d71ae5a4SJacob Faibussowitsch { 399797d8846cSMatthew Knepley DMLabel spmap; 399897d8846cSMatthew Knepley PetscInt depth, d; 399997d8846cSMatthew Knepley 400097d8846cSMatthew Knepley PetscFunctionBegin; 40019566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 40029566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 400397d8846cSMatthew Knepley if (spmap && depth >= 0) { 400497d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 400597d8846cSMatthew Knepley PetscInt *points, *depths; 400697d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 400797d8846cSMatthew Knepley 40089566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 400963a3b9bcSJacob Faibussowitsch PetscCheck(!pStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 40109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 40119566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth + 1, MPIU_INT, &depths)); 401297d8846cSMatthew Knepley depths[0] = depth; 401397d8846cSMatthew Knepley depths[1] = 0; 4014ad540459SPierre Jolivet for (d = 2; d <= depth; ++d) depths[d] = depth + 1 - d; 401597d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 401697d8846cSMatthew Knepley const PetscInt dep = depths[d]; 401797d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 401897d8846cSMatthew Knepley 40199566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 40209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 402197d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 402263a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd - depStart, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd - depStart); 402397d8846cSMatthew Knepley } else { 402497d8846cSMatthew Knepley if (!n) { 402597d8846cSMatthew Knepley if (d == 0) { 402697d8846cSMatthew Knepley /* Missing cells */ 402797d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = -1; 402897d8846cSMatthew Knepley } else { 402997d8846cSMatthew Knepley /* Missing faces */ 403097d8846cSMatthew Knepley for (p = 0; p < depEnd - depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 403197d8846cSMatthew Knepley } 403297d8846cSMatthew Knepley } 403397d8846cSMatthew Knepley } 403497d8846cSMatthew Knepley if (n) { 403597d8846cSMatthew Knepley IS is; 403697d8846cSMatthew Knepley const PetscInt *opoints; 403797d8846cSMatthew Knepley 40389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 40399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 404097d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 40419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 40429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 404397d8846cSMatthew Knepley } 404497d8846cSMatthew Knepley } 40459566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth + 1, MPIU_INT, &depths)); 404663a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 40479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 40489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &mesh->subpointState)); 404997d8846cSMatthew Knepley } 40503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405197d8846cSMatthew Knepley } 405297d8846cSMatthew Knepley 405364beef6dSMatthew G. Knepley /*@ 405497d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 4055e6ccafaeSMatthew G Knepley 4056e6ccafaeSMatthew G Knepley Input Parameter: 4057e6ccafaeSMatthew G Knepley . dm - The submesh DM 4058e6ccafaeSMatthew G Knepley 4059e6ccafaeSMatthew G Knepley Output Parameter: 40600298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 4061e6ccafaeSMatthew G Knepley 40623982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 406364beef6dSMatthew G. Knepley 406464beef6dSMatthew G. Knepley Level: developer 406564beef6dSMatthew G. Knepley 4066db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 406764beef6dSMatthew G. Knepley @*/ 4068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 4069d71ae5a4SJacob Faibussowitsch { 407097d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *)dm->data; 407197d8846cSMatthew Knepley DMLabel spmap; 407297d8846cSMatthew Knepley PetscObjectState state; 4073e6ccafaeSMatthew G Knepley 4074e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4075e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4076e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 40779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 40789566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject)spmap, &state)); 40799566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 408097d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 40813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4082e6ccafaeSMatthew G Knepley } 4083559a1558SMatthew G. Knepley 4084559a1558SMatthew G. Knepley /*@ 4085a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 4086559a1558SMatthew G. Knepley 4087559a1558SMatthew G. Knepley Input Parameters: 4088a6e0b375SMatthew G. Knepley + dmA - The first DM 4089a6e0b375SMatthew G. Knepley - dmB - The second DM 4090559a1558SMatthew G. Knepley 4091559a1558SMatthew G. Knepley Output Parameter: 4092a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 4093559a1558SMatthew G. Knepley 4094a6e0b375SMatthew G. Knepley Level: intermediate 4095559a1558SMatthew G. Knepley 4096db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()` 4097559a1558SMatthew G. Knepley @*/ 4098d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4099d71ae5a4SJacob Faibussowitsch { 4100a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4101559a1558SMatthew G. Knepley DMLabel spmap; 4102a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4103559a1558SMatthew G. Knepley 410444171101SMatthew G. Knepley PetscFunctionBegin; 4105a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 4106a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 41073ba16761SJacob Faibussowitsch if (!dmA || !dmB) PetscFunctionReturn(PETSC_SUCCESS); 4108a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4109064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 41109371c9d4SSatish Balay if (dmA == dmB) { 41119371c9d4SSatish Balay *rel = DM_ENC_EQUALITY; 41123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41139371c9d4SSatish Balay } 41149566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 41159566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 41169566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 41179566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4118a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4119a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4120a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4121a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4122a6e0b375SMatthew G. Knepley goto end; 4123559a1558SMatthew G. Knepley } 4124a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4125a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4126a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4127a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 41289566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4129a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4130a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4131a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4132a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4133a6e0b375SMatthew G. Knepley } else { 4134a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4135a6e0b375SMatthew G. Knepley } 4136a6e0b375SMatthew G. Knepley end: 41379566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 41389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 41393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4140559a1558SMatthew G. Knepley } 414144171101SMatthew G. Knepley 414244171101SMatthew G. Knepley /*@ 4143a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 414444171101SMatthew G. Knepley 414544171101SMatthew G. Knepley Input Parameters: 4146a6e0b375SMatthew G. Knepley + dmA - The first DM 4147a6e0b375SMatthew G. Knepley . dmB - The second DM 4148a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4149a6e0b375SMatthew G. Knepley - pB - A point of dmB 415044171101SMatthew G. Knepley 415144171101SMatthew G. Knepley Output Parameter: 4152a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 415344171101SMatthew G. Knepley 4154a6e0b375SMatthew G. Knepley Level: intermediate 415544171101SMatthew G. Knepley 4156db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()` 415744171101SMatthew G. Knepley @*/ 4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 4159d71ae5a4SJacob Faibussowitsch { 4160a6e0b375SMatthew G. Knepley DM sdm; 4161a6e0b375SMatthew G. Knepley IS subpointIS; 4162a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4163a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 416444171101SMatthew G. Knepley 416544171101SMatthew G. Knepley PetscFunctionBegin; 4166a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4167a6e0b375SMatthew G. Knepley switch (etype) { 4168a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4169a6e0b375SMatthew G. Knepley sdm = dmB; 41709566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 41719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4172a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 41739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4174a6e0b375SMatthew G. Knepley break; 4175a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4176a6e0b375SMatthew G. Knepley sdm = dmA; 41779566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 41789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 41799566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 41809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4181a6e0b375SMatthew G. Knepley if (*pA < 0) { 41829566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 41839566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 418463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4185a6e0b375SMatthew G. Knepley } 41869566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4187a6e0b375SMatthew G. Knepley break; 4188a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4189d71ae5a4SJacob Faibussowitsch case DM_ENC_NONE: 4190d71ae5a4SJacob Faibussowitsch *pA = pB; 4191d71ae5a4SJacob Faibussowitsch break; 41929371c9d4SSatish Balay case DM_ENC_UNKNOWN: { 4193a6e0b375SMatthew G. Knepley DMEnclosureType enc; 419444171101SMatthew G. Knepley 41959566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 41969566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 41979371c9d4SSatish Balay } break; 4198d71ae5a4SJacob Faibussowitsch default: 4199d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int)etype); 420044171101SMatthew G. Knepley } 42013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 420244171101SMatthew G. Knepley } 4203