1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley 9412e9a14SMatthew G. Knepley PetscFunctionBegin; 109566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 11412e9a14SMatthew G. Knepley switch (ct) { 12412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 17412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 18412e9a14SMatthew G. Knepley } 19412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 20412e9a14SMatthew G. Knepley } 21412e9a14SMatthew G. Knepley 22412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 23412e9a14SMatthew G. Knepley { 24412e9a14SMatthew G. Knepley DMLabel ctLabel; 25412e9a14SMatthew G. Knepley 26412e9a14SMatthew G. Knepley PetscFunctionBegin; 27412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 28412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 299566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(dm, &ctLabel)); 30412e9a14SMatthew G. Knepley switch (dim) { 319566063dSJacob Faibussowitsch case 1: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd));break; 329566063dSJacob Faibussowitsch case 2: PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd));break; 33412e9a14SMatthew G. Knepley case 3: 349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd)); 359566063dSJacob Faibussowitsch if (*cStart < 0) PetscCall(DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd)); 36412e9a14SMatthew G. Knepley break; 37412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 38412e9a14SMatthew G. Knepley } 39412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley 42e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4330560a7bSMatthew G. Knepley { 4430560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4530560a7bSMatthew G. Knepley 4630560a7bSMatthew G. Knepley PetscFunctionBegin; 479566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd)); 4830560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 4930560a7bSMatthew G. Knepley PetscInt supportSize; 5030560a7bSMatthew G. Knepley 519566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, f, &supportSize)); 52e752be1aSMatthew G. Knepley if (supportSize == 1) { 53e752be1aSMatthew G. Knepley if (val < 0) { 54e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 55e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 56e752be1aSMatthew G. Knepley 579566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 58e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &cval)); 60e752be1aSMatthew G. Knepley if (cval < 0) continue; 619566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, cval)); 62e752be1aSMatthew G. Knepley break; 63e752be1aSMatthew G. Knepley } 649566063dSJacob Faibussowitsch if (cl == clSize*2) PetscCall(DMLabelSetValue(label, f, 1)); 659566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure)); 66e752be1aSMatthew G. Knepley } else { 679566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, f, val)); 68e752be1aSMatthew G. Knepley } 69e752be1aSMatthew G. Knepley } 7030560a7bSMatthew G. Knepley } 7130560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7230560a7bSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley 74cd0c2139SMatthew G Knepley /*@ 75cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 76cd0c2139SMatthew G Knepley 77cd0c2139SMatthew G Knepley Not Collective 78cd0c2139SMatthew G Knepley 79d8d19677SJose E. Roman Input Parameters: 80e752be1aSMatthew G. Knepley + dm - The original DM 81e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 82cd0c2139SMatthew G Knepley 83cd0c2139SMatthew G Knepley Output Parameter: 84e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Level: developer 87cd0c2139SMatthew G Knepley 88db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMCreateLabel()` 8909f723d9SJed Brown @*/ 90e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 91cd0c2139SMatthew G Knepley { 92827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 93cd0c2139SMatthew G Knepley 94cd0c2139SMatthew G Knepley PetscFunctionBegin; 95827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 969566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &flg)); 9708401ef6SPierre Jolivet PetscCheck(flg == DMPLEX_INTERPOLATED_FULL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 989566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label)); 99cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 100cd0c2139SMatthew G Knepley } 101cd0c2139SMatthew G Knepley 102c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 103b0bf5782SToby Isaac { 104b0bf5782SToby Isaac IS valueIS; 105ac51f24eSSander Arens PetscSF sfPoint; 106b0bf5782SToby Isaac const PetscInt *values; 107ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 108b0bf5782SToby Isaac 109b0bf5782SToby Isaac PetscFunctionBegin; 1109566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 1119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 1129566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm,0,&cStart,&cEnd)); 1139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 114b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 115b0bf5782SToby Isaac IS pointIS; 116b0bf5782SToby Isaac const PetscInt *points; 117b0bf5782SToby Isaac PetscInt numPoints, p; 118b0bf5782SToby Isaac 1199566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 1209566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 1219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 122b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 123b0bf5782SToby Isaac PetscInt q = points[p]; 124b0bf5782SToby Isaac PetscInt *closure = NULL; 125b0bf5782SToby Isaac PetscInt closureSize, c; 126b0bf5782SToby Isaac 127b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 128b0bf5782SToby Isaac continue; 129b0bf5782SToby Isaac } 1309566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 131b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 1329566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, closure[c], values[v])); 133b0bf5782SToby Isaac } 1349566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure)); 135b0bf5782SToby Isaac } 1369566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 1379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 138b0bf5782SToby Isaac } 1399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1419566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 1429566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL)); 143ac51f24eSSander Arens if (nroots >= 0) { 14426279d81SSanderA DMLabel lblRoots, lblLeaves; 14526279d81SSanderA IS valueIS, pointIS; 14626279d81SSanderA const PetscInt *values; 14726279d81SSanderA PetscInt numValues, v; 14826279d81SSanderA 14926279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 1509566063dSJacob Faibussowitsch PetscCall(DMLabelGather(label, sfPoint, &lblLeaves)); 1519566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblLeaves, &valueIS)); 1529566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1539566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 15426279d81SSanderA for (v = 0; v < numValues; ++v) { 15526279d81SSanderA const PetscInt value = values[v]; 15626279d81SSanderA 1579566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblLeaves, value, &pointIS)); 1589566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 16026279d81SSanderA } 1619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1629566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblLeaves)); 16426279d81SSanderA /* Push point contributions from roots into remote leaves */ 1659566063dSJacob Faibussowitsch PetscCall(DMLabelDistribute(label, sfPoint, &lblRoots)); 1669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(lblRoots, &valueIS)); 1679566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 1689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 16926279d81SSanderA for (v = 0; v < numValues; ++v) { 17026279d81SSanderA const PetscInt value = values[v]; 17126279d81SSanderA 1729566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(lblRoots, value, &pointIS)); 1739566063dSJacob Faibussowitsch PetscCall(DMLabelInsertIS(label, pointIS, value)); 1749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 17526279d81SSanderA } 1769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 1779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1789566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&lblRoots)); 17926279d81SSanderA } 180b0bf5782SToby Isaac PetscFunctionReturn(0); 181b0bf5782SToby Isaac } 182b0bf5782SToby Isaac 1832be2b188SMatthew G Knepley /*@ 1842be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1852be2b188SMatthew G Knepley 1862be2b188SMatthew G Knepley Input Parameters: 1872be2b188SMatthew G Knepley + dm - The DM 1882be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1892be2b188SMatthew G Knepley 1902be2b188SMatthew G Knepley Output Parameter: 1912be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Level: developer 1942be2b188SMatthew G Knepley 195db781477SPatrick Sanan .seealso: `DMPlexLabelCohesiveComplete()` 1962be2b188SMatthew G Knepley @*/ 1972be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 1982be2b188SMatthew G Knepley { 1992be2b188SMatthew G Knepley PetscFunctionBegin; 2009566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE)); 2012be2b188SMatthew G Knepley PetscFunctionReturn(0); 2022be2b188SMatthew G Knepley } 2032be2b188SMatthew G Knepley 2046cf0e42fSMatthew G. Knepley /*@ 205a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2066cf0e42fSMatthew G. Knepley 2076cf0e42fSMatthew G. Knepley Input Parameters: 2086cf0e42fSMatthew G. Knepley + dm - The DM 2096cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2106cf0e42fSMatthew G. Knepley 2116cf0e42fSMatthew G. Knepley Output Parameter: 2126cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2136cf0e42fSMatthew G. Knepley 2146cf0e42fSMatthew G. Knepley Level: developer 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2176cf0e42fSMatthew G. Knepley 218db781477SPatrick Sanan .seealso: `DMPlexLabelAddFaceCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 2196cf0e42fSMatthew G. Knepley @*/ 2206cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2216cf0e42fSMatthew G. Knepley { 2226cf0e42fSMatthew G. Knepley IS valueIS; 2236cf0e42fSMatthew G. Knepley const PetscInt *values; 224485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2256cf0e42fSMatthew G. Knepley 2266cf0e42fSMatthew G. Knepley PetscFunctionBegin; 2279566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2289566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 2316cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2326cf0e42fSMatthew G. Knepley IS pointIS; 2336cf0e42fSMatthew G. Knepley const PetscInt *points; 2346cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2356cf0e42fSMatthew G. Knepley 2369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2379566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 2396cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2406cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 241a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2426cf0e42fSMatthew G. Knepley 2439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 24422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 245a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 2469566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 24722eabd52SMatthew G. Knepley } 2489566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure)); 2496cf0e42fSMatthew G. Knepley } 2509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 2519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 2526cf0e42fSMatthew G. Knepley } 2539566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 2549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 2556cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2566cf0e42fSMatthew G. Knepley } 2576cf0e42fSMatthew G. Knepley 258f402d5e4SToby Isaac /*@ 259a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 260a6e0b375SMatthew G. Knepley 261a6e0b375SMatthew G. Knepley Input Parameters: 262a6e0b375SMatthew G. Knepley + dm - The DM 263a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 264a6e0b375SMatthew G. Knepley 265a6e0b375SMatthew G. Knepley Output Parameter: 266a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 267a6e0b375SMatthew G. Knepley 268a6e0b375SMatthew G. Knepley Level: developer 269a6e0b375SMatthew G. Knepley 270a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 271a6e0b375SMatthew G. Knepley 272db781477SPatrick Sanan .seealso: `DMPlexLabelAddCells()`, `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()` 273a6e0b375SMatthew G. Knepley @*/ 274a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 275a6e0b375SMatthew G. Knepley { 276a6e0b375SMatthew G. Knepley IS valueIS; 277a6e0b375SMatthew G. Knepley const PetscInt *values; 278a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley PetscFunctionBegin; 2819566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 2829566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2839566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 2849566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 2859566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 286a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 287a6e0b375SMatthew G. Knepley IS pointIS; 288a6e0b375SMatthew G. Knepley const PetscInt *points; 289a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 290a6e0b375SMatthew G. Knepley 2919566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 2929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 2939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 294a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 295a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 296a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 297a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 298a6e0b375SMatthew G. Knepley 299a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 3009566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 301a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 302a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 3039566063dSJacob Faibussowitsch if ((cell >= cStart) && (cell < cEnd)) {PetscCall(DMLabelSetValue(label, cell, values[v])); break;} 304a6e0b375SMatthew G. Knepley } 3059566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure)); 306a6e0b375SMatthew G. Knepley } 3079566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3089566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 309a6e0b375SMatthew G. Knepley } 3109566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 312a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 313a6e0b375SMatthew G. Knepley } 314a6e0b375SMatthew G. Knepley 315a6e0b375SMatthew G. Knepley /*@ 316f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 317f402d5e4SToby Isaac 318f402d5e4SToby Isaac Input Parameters: 319f402d5e4SToby Isaac + dm - The DM 320f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 321f402d5e4SToby Isaac 322f402d5e4SToby Isaac Output Parameter: 323f402d5e4SToby Isaac . label - A DMLabel without cells 324f402d5e4SToby Isaac 325f402d5e4SToby Isaac Level: developer 326f402d5e4SToby Isaac 327a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 328f402d5e4SToby Isaac 329db781477SPatrick Sanan .seealso: `DMPlexLabelComplete()`, `DMPlexLabelCohesiveComplete()`, `DMPlexLabelAddCells()` 330f402d5e4SToby Isaac @*/ 331f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 332f402d5e4SToby Isaac { 333f402d5e4SToby Isaac IS valueIS; 334f402d5e4SToby Isaac const PetscInt *values; 335485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 336f402d5e4SToby Isaac 337f402d5e4SToby Isaac PetscFunctionBegin; 3389566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 3399566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &numValues)); 3409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 3419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 342f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 343f402d5e4SToby Isaac IS pointIS; 344f402d5e4SToby Isaac const PetscInt *points; 345f402d5e4SToby Isaac PetscInt numPoints, p; 346f402d5e4SToby Isaac 3479566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, values[v], &numPoints)); 3489566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 3499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 350f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 351f402d5e4SToby Isaac PetscInt point = points[p]; 352f402d5e4SToby Isaac 353f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 3549566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label,point,values[v])); 355f402d5e4SToby Isaac } 356f402d5e4SToby Isaac } 3579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 3589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 359f402d5e4SToby Isaac } 3609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 3619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 362f402d5e4SToby Isaac PetscFunctionReturn(0); 363f402d5e4SToby Isaac } 364f402d5e4SToby Isaac 36559eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 36659eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3679fbee547SJacob Faibussowitsch static inline PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 368cd0c2139SMatthew G Knepley { 3692582d50cSToby Isaac PetscInt d, off = 0; 3702582d50cSToby Isaac 3712582d50cSToby Isaac PetscFunctionBegin; 37259eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3730974a383SToby Isaac for (d = 0; d < depth; d++) { 3742582d50cSToby Isaac PetscInt firstd = d; 3750974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3762582d50cSToby Isaac PetscInt e; 3772582d50cSToby Isaac 3782582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3792582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3802582d50cSToby Isaac firstd = e; 3812582d50cSToby Isaac firstStart = depthShift[2*d]; 3822582d50cSToby Isaac } 3832582d50cSToby Isaac } 3842582d50cSToby Isaac if (firstd != d) { 3852582d50cSToby Isaac PetscInt swap[2]; 3862582d50cSToby Isaac 3872582d50cSToby Isaac e = firstd; 3882582d50cSToby Isaac swap[0] = depthShift[2*d]; 3892582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 3902582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 3912582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 3922582d50cSToby Isaac depthShift[2*e] = swap[0]; 3932582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 3970974a383SToby Isaac for (d = 0; d <= depth; d++) { 3982582d50cSToby Isaac off += depthShift[2*d+1]; 39959eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4002582d50cSToby Isaac } 4012582d50cSToby Isaac PetscFunctionReturn(0); 4022582d50cSToby Isaac } 4032582d50cSToby Isaac 4042582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4059fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4062582d50cSToby Isaac { 4072582d50cSToby Isaac PetscInt d; 4082582d50cSToby Isaac PetscInt newOff = 0; 4092582d50cSToby Isaac 4102582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4112582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4122582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4132582d50cSToby Isaac } 4140974a383SToby Isaac return p + newOff; 4152582d50cSToby Isaac } 4162582d50cSToby Isaac 4172582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4189fbee547SJacob Faibussowitsch static inline PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4192582d50cSToby Isaac { 4202582d50cSToby Isaac PetscInt d; 4212582d50cSToby Isaac PetscInt newOff = 0; 4222582d50cSToby Isaac 4232582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4242582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4252582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4262582d50cSToby Isaac } 4270974a383SToby Isaac return p + newOff; 428cd0c2139SMatthew G Knepley } 429cd0c2139SMatthew G Knepley 430cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 431cd0c2139SMatthew G Knepley { 432cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 433fa8e8ae5SToby Isaac DMLabel depthLabel; 434cd0c2139SMatthew G Knepley 435cd0c2139SMatthew G Knepley PetscFunctionBegin; 4369566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 437cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 438cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 4399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 4400974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 4419566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(dmNew, pStart, pEnd)); 4429566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew,"depth")); 4439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dmNew,&depthLabel)); 4449566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "celltype")); 445cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 446cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 447fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 448fa8e8ae5SToby Isaac IS pIS; 449fa8e8ae5SToby Isaac 4509566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, &pStart, &pEnd)); 451fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 452fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 4539566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS)); 4549566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(depthLabel, d, pIS)); 4559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 456cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4572582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 458cd0c2139SMatthew G Knepley PetscInt size; 459412e9a14SMatthew G. Knepley DMPolytopeType ct; 460cd0c2139SMatthew G Knepley 4619566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4629566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(dmNew, newp, size)); 4639566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4649566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(dmNew, newp, size)); 4659566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, p, &ct)); 4669566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(dmNew, newp, ct)); 467cd0c2139SMatthew G Knepley } 468cd0c2139SMatthew G Knepley } 469cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 470cd0c2139SMatthew G Knepley } 471cd0c2139SMatthew G Knepley 472cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 473cd0c2139SMatthew G Knepley { 4742582d50cSToby Isaac PetscInt *newpoints; 4752582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 476cd0c2139SMatthew G Knepley 477cd0c2139SMatthew G Knepley PetscFunctionBegin; 4789566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 479cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 4809566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew)); 4829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints)); 483cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 485cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 486cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 4872582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 488cd0c2139SMatthew G Knepley 4899566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &size)); 4909566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &points)); 4919566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, p, &orientations)); 492cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 4932582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 494cd0c2139SMatthew G Knepley } 4959566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(dmNew, newp, newpoints)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(dmNew, newp, orientations)); 4979566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, p, &size)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, newp, &sizeNew)); 4999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, p, &points)); 500cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5012582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 502cd0c2139SMatthew G Knepley } 503dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 5049566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(dmNew, newp, newpoints)); 505cd0c2139SMatthew G Knepley } 5069566063dSJacob Faibussowitsch PetscCall(PetscFree(newpoints)); 507cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley 510cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 511cd0c2139SMatthew G Knepley { 512cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 513cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 514cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 515f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 516f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 517f2b8cce1SMatthew G. Knepley PetscBool hasCells; 518cd0c2139SMatthew G Knepley 519cd0c2139SMatthew G Knepley PetscFunctionBegin; 5209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dim)); 5219566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(dmNew, dim)); 5229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 523cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 5249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 5259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5269566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew)); 5279566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew)); 5289566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 5299566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection)); 5309566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(newCoordSection, 1)); 5319566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(newCoordSection, 0, dim)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(coordSection, &sStart, &sEnd)); 533f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 5349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew)); 535f2b8cce1SMatthew G. Knepley if (hasCells) { 536f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 537f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 538f2b8cce1SMatthew G. Knepley 5399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5409566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, cNew, dof)); 5419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof)); 542f2b8cce1SMatthew G. Knepley } 543f2b8cce1SMatthew G. Knepley } 544cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 5459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(newCoordSection, v, dim)); 5469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(newCoordSection, v, 0, dim)); 547cd0c2139SMatthew G Knepley } 5489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(newCoordSection)); 5499566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection)); 5509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(newCoordSection, &coordSize)); 5519566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &newCoordinates)); 5529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) newCoordinates, "coordinates")); 5539566063dSJacob Faibussowitsch PetscCall(VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE)); 5549566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(newCoordinates, dim)); 5559566063dSJacob Faibussowitsch PetscCall(VecSetType(newCoordinates,VECSTANDARD)); 5569566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(dmNew, newCoordinates)); 5579566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(newCoordinates, &newCoords)); 560f2b8cce1SMatthew G. Knepley if (hasCells) { 561f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 562f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 563f2b8cce1SMatthew G. Knepley 5649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, c, &dof)); 5659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, c, &off)); 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, cNew, &noff)); 567f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 568f2b8cce1SMatthew G. Knepley } 569f2b8cce1SMatthew G. Knepley } 570cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 571cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 572cd0c2139SMatthew G Knepley 5739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, v, &dof)); 5749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, v, &off)); 5759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff)); 576f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 577cd0c2139SMatthew G Knepley } 5789566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 5799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(newCoordinates, &newCoords)); 5809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&newCoordinates)); 5819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newCoordSection)); 582cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 583cd0c2139SMatthew G Knepley } 584cd0c2139SMatthew G Knepley 5850e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Single(DM dm, PetscInt depthShift[], PetscSF sf, PetscSF sfNew) 586cd0c2139SMatthew G Knepley { 587cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 588cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 589cd0c2139SMatthew G Knepley const PetscInt *localPoints; 590cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 5910e33faafSMatthew G. Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, depth = 0, totShift = 0; 592cd0c2139SMatthew G Knepley 593cd0c2139SMatthew G Knepley PetscFunctionBegin; 5949566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 5959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 5969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &numRoots, &numLeaves, &localPoints, &remotePoints)); 5976e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd, depth, depthShift) - pEnd; 598cd0c2139SMatthew G Knepley if (numRoots >= 0) { 5999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(numRoots, &newLocation, pEnd-pStart, &newRemoteLocation)); 6000e33faafSMatthew G. Knepley for (l = 0; l < numRoots; ++l) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 6019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, newLocation, newRemoteLocation, MPI_REPLACE)); 6039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &glocalPoints)); 6049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeaves, &gremotePoints)); 605cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6062582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 607cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 608cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 609cd0c2139SMatthew G Knepley } 6109566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocation, newRemoteLocation)); 6119566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER)); 6120e33faafSMatthew G. Knepley } 6130e33faafSMatthew G. Knepley PetscFunctionReturn(0); 6140e33faafSMatthew G. Knepley } 6150e33faafSMatthew G. Knepley 6160e33faafSMatthew G. Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 6170e33faafSMatthew G. Knepley { 6180e33faafSMatthew G. Knepley PetscSF sfPoint, sfPointNew; 6190e33faafSMatthew G. Knepley PetscBool useNatural; 6200e33faafSMatthew G. Knepley 6210e33faafSMatthew G. Knepley PetscFunctionBegin; 6220e33faafSMatthew G. Knepley /* Step 9: Convert pointSF */ 6239566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 6249566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dmNew, &sfPointNew)); 6259566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfPoint, sfPointNew)); 6260e33faafSMatthew G. Knepley /* Step 9b: Convert naturalSF */ 6279566063dSJacob Faibussowitsch PetscCall(DMGetUseNatural(dm, &useNatural)); 6280e33faafSMatthew G. Knepley if (useNatural) { 6290e33faafSMatthew G. Knepley PetscSF sfNat, sfNatNew; 6300e33faafSMatthew G. Knepley 6319566063dSJacob Faibussowitsch PetscCall(DMSetUseNatural(dmNew, useNatural)); 6329566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dm, &sfNat)); 6339566063dSJacob Faibussowitsch PetscCall(DMGetNaturalSF(dmNew, &sfNatNew)); 6349566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Single(dm, depthShift, sfNat, sfNatNew)); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 637cd0c2139SMatthew G Knepley } 638cd0c2139SMatthew G Knepley 639cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 640cd0c2139SMatthew G Knepley { 641d56405f8SMatthew G. Knepley PetscInt depth = 0, numLabels, l; 642cd0c2139SMatthew G Knepley 643cd0c2139SMatthew G Knepley PetscFunctionBegin; 6449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 645cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 6469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &numLabels)); 647cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 648cd0c2139SMatthew G Knepley DMLabel label, newlabel; 649cd0c2139SMatthew G Knepley const char *lname; 650fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 651cd0c2139SMatthew G Knepley IS valueIS; 652cd0c2139SMatthew G Knepley const PetscInt *values; 653cd0c2139SMatthew G Knepley PetscInt numValues, val; 654cd0c2139SMatthew G Knepley 6559566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 6569566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 657cd0c2139SMatthew G Knepley if (isDepth) continue; 6589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 659fa8e8ae5SToby Isaac if (isDim) continue; 6609566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, lname)); 6619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 6629566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, lname, &newlabel)); 6639566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label,&val)); 6649566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel,val)); 6659566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 6669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numValues)); 6679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 668cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 669cd0c2139SMatthew G Knepley IS pointIS; 670cd0c2139SMatthew G Knepley const PetscInt *points; 671cd0c2139SMatthew G Knepley PetscInt numPoints, p; 672cd0c2139SMatthew G Knepley 6739566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[val], &pointIS)); 6749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 6759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 676cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6772582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 678cd0c2139SMatthew G Knepley 6799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(newlabel, newpoint, values[val])); 680cd0c2139SMatthew G Knepley } 6819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 6829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 683cd0c2139SMatthew G Knepley } 6849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 6859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 686cd0c2139SMatthew G Knepley } 687d56405f8SMatthew G. Knepley PetscFunctionReturn(0); 688d56405f8SMatthew G. Knepley } 689d56405f8SMatthew G. Knepley 690d56405f8SMatthew G. Knepley static PetscErrorCode DMPlexCreateVTKLabel_Internal(DM dm, PetscBool createGhostLabel, DM dmNew) 691d56405f8SMatthew G. Knepley { 692d56405f8SMatthew G. Knepley PetscSF sfPoint; 693d56405f8SMatthew G. Knepley DMLabel vtkLabel, ghostLabel = NULL; 694d56405f8SMatthew G. Knepley const PetscSFNode *leafRemote; 695d56405f8SMatthew G. Knepley const PetscInt *leafLocal; 696d56405f8SMatthew G. Knepley PetscInt cellHeight, cStart, cEnd, c, fStart, fEnd, f, numLeaves, l; 697d56405f8SMatthew G. Knepley PetscMPIInt rank; 698d56405f8SMatthew G. Knepley 699d56405f8SMatthew G. Knepley PetscFunctionBegin; 700cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 7019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank)); 7029566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 7039566063dSJacob Faibussowitsch PetscCall(DMPlexGetVTKCellHeight(dmNew, &cellHeight)); 7049566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd)); 7059566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote)); 7069566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "vtk")); 7079566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "vtk", &vtkLabel)); 708d56405f8SMatthew G. Knepley if (createGhostLabel) { 7099566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dmNew, "ghost")); 7109566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmNew, "ghost", &ghostLabel)); 711d56405f8SMatthew G. Knepley } 712cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 713cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 7149566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 715cd0c2139SMatthew G Knepley } 716cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 717cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 7189566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 7191baa6e33SBarry Smith } else if (ghostLabel) PetscCall(DMLabelSetValue(ghostLabel, c, 2)); 720cd0c2139SMatthew G Knepley } 721cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 7229566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(vtkLabel, c, 1)); 723cd0c2139SMatthew G Knepley } 724d56405f8SMatthew G. Knepley if (ghostLabel) { 7259566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd)); 726cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 727cd0c2139SMatthew G Knepley PetscInt numCells; 728cd0c2139SMatthew G Knepley 7299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dmNew, f, &numCells)); 730cd0c2139SMatthew G Knepley if (numCells < 2) { 7319566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 732cd0c2139SMatthew G Knepley } else { 733cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 734cd0c2139SMatthew G Knepley PetscInt vA, vB; 735cd0c2139SMatthew G Knepley 7369566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dmNew, f, &cells)); 7379566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[0], &vA)); 7389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vtkLabel, cells[1], &vB)); 7399566063dSJacob Faibussowitsch if (vA != 1 && vB != 1) PetscCall(DMLabelSetValue(ghostLabel, f, 1)); 740cd0c2139SMatthew G Knepley } 741cd0c2139SMatthew G Knepley } 742d56405f8SMatthew G. Knepley } 743cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 744cd0c2139SMatthew G Knepley } 745cd0c2139SMatthew G Knepley 746ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 747ca04dac2SToby Isaac { 748ca04dac2SToby Isaac DM refTree; 749ca04dac2SToby Isaac PetscSection pSec; 750ca04dac2SToby Isaac PetscInt *parents, *childIDs; 751ca04dac2SToby Isaac 752ca04dac2SToby Isaac PetscFunctionBegin; 7539566063dSJacob Faibussowitsch PetscCall(DMPlexGetReferenceTree(dm,&refTree)); 7549566063dSJacob Faibussowitsch PetscCall(DMPlexSetReferenceTree(dmNew,refTree)); 7559566063dSJacob Faibussowitsch PetscCall(DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL)); 756ca04dac2SToby Isaac if (pSec) { 7572582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 758fb4630b5SToby Isaac PetscInt *childIDsShifted; 759ca04dac2SToby Isaac PetscSection pSecShifted; 760ca04dac2SToby Isaac 7619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(pSec,&pStart,&pEnd)); 7629566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm,&depth)); 7632582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7642582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 7659566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted)); 7669566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted)); 7679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted)); 768ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 769fb4630b5SToby Isaac /* start off assuming no children */ 7709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,p,0)); 771fb4630b5SToby Isaac } 772fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 773fb4630b5SToby Isaac PetscInt dof; 774fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 775ca04dac2SToby Isaac 7769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 7779566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(pSecShifted,pNew,dof)); 778ca04dac2SToby Isaac } 7799566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pSecShifted)); 780fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 781fb4630b5SToby Isaac PetscInt dof; 782fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 783fb4630b5SToby Isaac 7849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pSec,p,&dof)); 785fb4630b5SToby Isaac if (dof) { 786fb4630b5SToby Isaac PetscInt off, offNew; 787fb4630b5SToby Isaac 7889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSec,p,&off)); 7899566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pSecShifted,pNew,&offNew)); 790fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 791fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 792fb4630b5SToby Isaac } 793fb4630b5SToby Isaac } 7949566063dSJacob Faibussowitsch PetscCall(DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted)); 7959566063dSJacob Faibussowitsch PetscCall(PetscFree2(parentsShifted,childIDsShifted)); 7969566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&pSecShifted)); 797ca04dac2SToby Isaac } 798ca04dac2SToby Isaac PetscFunctionReturn(0); 799ca04dac2SToby Isaac } 800ca04dac2SToby Isaac 801cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 802cd0c2139SMatthew G Knepley { 803da97024aSMatthew G. Knepley PetscSF sf; 804cd0c2139SMatthew G Knepley IS valueIS; 805da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 806cd0c2139SMatthew G Knepley PetscInt *depthShift; 8072582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 80890b157c4SStefano Zampini PetscBool isper; 80990b157c4SStefano Zampini const PetscReal *maxCell, *L; 81090b157c4SStefano Zampini const DMBoundaryType *bd; 811cd0c2139SMatthew G Knepley 812cd0c2139SMatthew G Knepley PetscFunctionBegin; 8139566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 8149566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 815da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 8169566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 817cd0c2139SMatthew G Knepley /* Count ghost cells */ 8189566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 8199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numFS)); 8209566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 8214a6cfa73SMatthew G. Knepley Ng = 0; 822cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 82346c796b9SMatthew G. Knepley IS faceIS; 82446c796b9SMatthew G. Knepley const PetscInt *faces; 82546c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 826cd0c2139SMatthew G Knepley 8279566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8289566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 83046c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 831ca04dac2SToby Isaac PetscInt numChildren; 832ca04dac2SToby Isaac 8339566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8349566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 835ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 836ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 83746c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 83846c796b9SMatthew G. Knepley } 8394a6cfa73SMatthew G. Knepley Ng += numBdFaces; 8409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 842cd0c2139SMatthew G Knepley } 8439566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 8449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*(depth+1), &depthShift)); 8452582d50cSToby Isaac for (d = 0; d <= depth; d++) { 84659eef20bSToby Isaac PetscInt dEnd; 8472582d50cSToby Isaac 8489566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm,d,NULL,&dEnd)); 84959eef20bSToby Isaac depthShift[2*d] = dEnd; 8502582d50cSToby Isaac depthShift[2*d+1] = 0; 8512582d50cSToby Isaac } 8522582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8539566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 8549566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, gdm)); 855cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 8569566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 8574a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 8589566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(gdm, c, 1)); 859cd0c2139SMatthew G Knepley } 860cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 861cd0c2139SMatthew G Knepley IS faceIS; 862cd0c2139SMatthew G Knepley const PetscInt *faces; 863cd0c2139SMatthew G Knepley PetscInt numFaces, f; 864cd0c2139SMatthew G Knepley 8659566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8669566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8679566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 868cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 869ca04dac2SToby Isaac PetscInt size, numChildren; 870cd0c2139SMatthew G Knepley 8719566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8729566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 873ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 87446c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 8759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, faces[f], &size)); 87663a3b9bcSJacob Faibussowitsch PetscCheck(size == 1,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %" PetscInt_FMT " with %" PetscInt_FMT " support cells", faces[f], size); 8779566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(gdm, faces[f] + Ng, 2)); 878cd0c2139SMatthew G Knepley } 8799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 8809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 881cd0c2139SMatthew G Knepley } 882cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 8839566063dSJacob Faibussowitsch PetscCall(DMSetUp(gdm)); 8849566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, gdm)); 885cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 886cd0c2139SMatthew G Knepley ghostCell = cEnd; 887cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 888cd0c2139SMatthew G Knepley IS faceIS; 889cd0c2139SMatthew G Knepley const PetscInt *faces; 890cd0c2139SMatthew G Knepley PetscInt numFaces, f; 891cd0c2139SMatthew G Knepley 8929566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[fs], &faceIS)); 8939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(faceIS, &numFaces)); 8949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(faceIS, &faces)); 89546c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 896ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 897cd0c2139SMatthew G Knepley 8989566063dSJacob Faibussowitsch PetscCall(PetscFindInt(faces[f], nleaves, leaves, &loc)); 8999566063dSJacob Faibussowitsch PetscCall(DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL)); 900ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 90146c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 9029566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(gdm, ghostCell, &newFace)); 9039566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(gdm, newFace, 1, ghostCell)); 90446c796b9SMatthew G. Knepley ++ghostCell; 905cd0c2139SMatthew G Knepley } 9069566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(faceIS, &faces)); 9079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faceIS)); 908cd0c2139SMatthew G Knepley } 9099566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 9109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 9119566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, gdm)); 9129566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, gdm)); 9139566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, gdm)); 9149566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_TRUE, gdm)); 9159566063dSJacob Faibussowitsch PetscCall(DMPlexShiftTree_Internal(dm, depthShift, gdm)); 9169566063dSJacob Faibussowitsch PetscCall(PetscFree(depthShift)); 917412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 9189566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST)); 919412e9a14SMatthew G. Knepley } 920966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 9219566063dSJacob Faibussowitsch PetscCall(DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd)); 9229566063dSJacob Faibussowitsch PetscCall(DMSetPeriodicity(gdm, isper, maxCell, L, bd)); 9234a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 924cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 925cd0c2139SMatthew G Knepley } 926cd0c2139SMatthew G Knepley 927cd0c2139SMatthew G Knepley /*@C 928cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 929cd0c2139SMatthew G Knepley 930cd0c2139SMatthew G Knepley Collective on dm 931cd0c2139SMatthew G Knepley 932cd0c2139SMatthew G Knepley Input Parameters: 933cd0c2139SMatthew G Knepley + dm - The original DM 934cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 935cd0c2139SMatthew G Knepley 936cd0c2139SMatthew G Knepley Output Parameters: 937cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 938cd0c2139SMatthew G Knepley - dmGhosted - The new DM 939cd0c2139SMatthew G Knepley 940cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 941cd0c2139SMatthew G Knepley 942cd0c2139SMatthew G Knepley Level: developer 943cd0c2139SMatthew G Knepley 944db781477SPatrick Sanan .seealso: `DMCreate()` 94531266bc0SMatthew G. Knepley @*/ 946cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 947cd0c2139SMatthew G Knepley { 948cd0c2139SMatthew G Knepley DM gdm; 949cd0c2139SMatthew G Knepley DMLabel label; 950cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 951412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 952b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 953cd0c2139SMatthew G Knepley 954cd0c2139SMatthew G Knepley PetscFunctionBegin; 955cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 956dadcf809SJacob Faibussowitsch if (numGhostCells) PetscValidIntPointer(numGhostCells, 3); 957cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 9589566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &gdm)); 9599566063dSJacob Faibussowitsch PetscCall(DMSetType(gdm, DMPLEX)); 9609566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 9619566063dSJacob Faibussowitsch PetscCall(DMSetDimension(gdm, dim)); 9629566063dSJacob Faibussowitsch PetscCall(DMGetBasicAdjacency(dm, &useCone, &useClosure)); 9639566063dSJacob Faibussowitsch PetscCall(DMSetBasicAdjacency(gdm, useCone, useClosure)); 9649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 965cd0c2139SMatthew G Knepley if (!label) { 966cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 9679566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 9689566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 9699566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(dm, 1, label)); 970cd0c2139SMatthew G Knepley } 9719566063dSJacob Faibussowitsch PetscCall(DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm)); 9729566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, gdm)); 9735de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, gdm)); 974cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 975d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 976cd0c2139SMatthew G Knepley *dmGhosted = gdm; 977cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 978cd0c2139SMatthew G Knepley } 979cd0c2139SMatthew G Knepley 980accc9626SMatthew G. Knepley static PetscErrorCode DivideCells_Private(DM dm, DMLabel label, DMPlexPointQueue queue) 981accc9626SMatthew G. Knepley { 982accc9626SMatthew G. Knepley PetscInt dim, d, shift = 100, *pStart, *pEnd; 983accc9626SMatthew G. Knepley 984accc9626SMatthew G. Knepley PetscFunctionBegin; 985accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 986accc9626SMatthew G. Knepley PetscCall(PetscMalloc2(dim, &pStart, dim, &pEnd)); 987accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 988accc9626SMatthew G. Knepley PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 989accc9626SMatthew G. Knepley } 990accc9626SMatthew G. Knepley while (!DMPlexPointQueueEmpty(queue)) { 991accc9626SMatthew G. Knepley PetscInt cell = -1; 992accc9626SMatthew G. Knepley PetscInt *closure = NULL; 993accc9626SMatthew G. Knepley PetscInt closureSize, cl, cval; 994accc9626SMatthew G. Knepley 995accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDequeue(queue, &cell)); 996accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cell, &cval)); 997accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 998accc9626SMatthew G. Knepley /* Mark points in the cell closure that touch the fault */ 999accc9626SMatthew G. Knepley for (d = 0; d < dim; ++d) { 1000accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1001accc9626SMatthew G. Knepley const PetscInt clp = closure[cl]; 1002accc9626SMatthew G. Knepley PetscInt clval; 1003accc9626SMatthew G. Knepley 1004accc9626SMatthew G. Knepley if ((clp < pStart[d]) || (clp >= pEnd[d])) continue; 1005accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &clval)); 1006accc9626SMatthew G. Knepley if (clval == -1) { 1007accc9626SMatthew G. Knepley const PetscInt *cone; 1008accc9626SMatthew G. Knepley PetscInt coneSize, c; 1009accc9626SMatthew G. Knepley 1010accc9626SMatthew G. Knepley /* If a cone point touches the fault, then this point touches the fault */ 1011accc9626SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, clp, &cone)); 1012accc9626SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, clp, &coneSize)); 1013accc9626SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 1014accc9626SMatthew G. Knepley PetscInt cpval; 1015accc9626SMatthew G. Knepley 1016accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, cone[c], &cpval)); 1017accc9626SMatthew G. Knepley if (cpval != -1) { 1018accc9626SMatthew G. Knepley PetscInt dep; 1019accc9626SMatthew G. Knepley 1020accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, clp, &dep)); 1021accc9626SMatthew G. Knepley clval = cval < 0 ? -(shift+dep) : shift+dep; 1022accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, clval)); 1023accc9626SMatthew G. Knepley break; 1024accc9626SMatthew G. Knepley } 1025accc9626SMatthew G. Knepley } 1026accc9626SMatthew G. Knepley } 1027accc9626SMatthew G. Knepley /* Mark neighbor cells through marked faces (these cells must also touch the fault) */ 1028accc9626SMatthew G. Knepley if (d == dim-1 && clval != -1) { 1029accc9626SMatthew G. Knepley const PetscInt *support; 1030accc9626SMatthew G. Knepley PetscInt supportSize, s, nval; 1031accc9626SMatthew G. Knepley 1032accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, clp, &support)); 1033accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, clp, &supportSize)); 1034accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1035accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[s], &nval)); 1036accc9626SMatthew G. Knepley if (nval == -1) { 1037accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], clval < 0 ? clval-1 : clval+1)); 1038accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(queue, support[s])); 1039accc9626SMatthew G. Knepley } 1040accc9626SMatthew G. Knepley } 1041accc9626SMatthew G. Knepley } 1042accc9626SMatthew G. Knepley } 1043accc9626SMatthew G. Knepley } 1044accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 1045accc9626SMatthew G. Knepley } 1046accc9626SMatthew G. Knepley PetscCall(PetscFree2(pStart, pEnd)); 1047accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1048accc9626SMatthew G. Knepley } 1049accc9626SMatthew G. Knepley 1050accc9626SMatthew G. Knepley typedef struct { 1051accc9626SMatthew G. Knepley DM dm; 1052accc9626SMatthew G. Knepley DMPlexPointQueue queue; 1053accc9626SMatthew G. Knepley } PointDivision; 1054accc9626SMatthew G. Knepley 1055accc9626SMatthew G. Knepley static PetscErrorCode divideCell(DMLabel label, PetscInt p, PetscInt val, void *ctx) 1056accc9626SMatthew G. Knepley { 1057accc9626SMatthew G. Knepley PointDivision *div = (PointDivision *) ctx; 1058accc9626SMatthew G. Knepley PetscInt cval = val < 0 ? val-1 : val+1; 1059accc9626SMatthew G. Knepley const PetscInt *support; 1060accc9626SMatthew G. Knepley PetscInt supportSize, s; 1061accc9626SMatthew G. Knepley 1062accc9626SMatthew G. Knepley PetscFunctionBegin; 1063accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(div->dm, p, &support)); 1064accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(div->dm, p, &supportSize)); 1065accc9626SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 1066accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, support[s], cval)); 1067accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEnqueue(div->queue, support[s])); 1068accc9626SMatthew G. Knepley } 1069accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1070accc9626SMatthew G. Knepley } 1071accc9626SMatthew G. Knepley 1072accc9626SMatthew G. Knepley /* Mark cells by label propagation */ 1073accc9626SMatthew G. Knepley static PetscErrorCode DMPlexLabelFaultHalo(DM dm, DMLabel faultLabel) 1074accc9626SMatthew G. Knepley { 1075accc9626SMatthew G. Knepley DMPlexPointQueue queue = NULL; 1076accc9626SMatthew G. Knepley PointDivision div; 1077accc9626SMatthew G. Knepley PetscSF pointSF; 1078accc9626SMatthew G. Knepley IS pointIS; 1079accc9626SMatthew G. Knepley const PetscInt *points; 1080accc9626SMatthew G. Knepley PetscBool empty; 1081accc9626SMatthew G. Knepley PetscInt dim, shift = 100, n, i; 1082accc9626SMatthew G. Knepley 1083accc9626SMatthew G. Knepley PetscFunctionBegin; 1084accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1085accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueCreate(1024, &queue)); 1086accc9626SMatthew G. Knepley div.dm = dm; 1087accc9626SMatthew G. Knepley div.queue = queue; 1088accc9626SMatthew G. Knepley /* Enqueue cells on fault */ 1089accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, shift+dim, &pointIS)); 1090accc9626SMatthew G. Knepley if (pointIS) { 1091accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1092accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 1093accc9626SMatthew G. Knepley for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));} 1094accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1095accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1096accc9626SMatthew G. Knepley } 1097accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(faultLabel, -(shift+dim), &pointIS)); 1098accc9626SMatthew G. Knepley if (pointIS) { 1099accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(pointIS, &n)); 1100accc9626SMatthew G. Knepley PetscCall(ISGetIndices(pointIS, &points)); 1101accc9626SMatthew G. Knepley for (i = 0; i < n; ++i) {PetscCall(DMPlexPointQueueEnqueue(queue, points[i]));} 1102accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(pointIS, &points)); 1103accc9626SMatthew G. Knepley PetscCall(ISDestroy(&pointIS)); 1104accc9626SMatthew G. Knepley } 1105accc9626SMatthew G. Knepley 1106accc9626SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &pointSF)); 1107accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateBegin(faultLabel, pointSF)); 1108accc9626SMatthew G. Knepley /* While edge queue is not empty: */ 1109accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty)); 1110accc9626SMatthew G. Knepley while (!empty) { 1111accc9626SMatthew G. Knepley PetscCall(DivideCells_Private(dm, faultLabel, queue)); 1112accc9626SMatthew G. Knepley PetscCall(DMLabelPropagatePush(faultLabel, pointSF, divideCell, &div)); 1113accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueEmptyCollective((PetscObject) dm, queue, &empty)); 1114accc9626SMatthew G. Knepley } 1115accc9626SMatthew G. Knepley PetscCall(DMLabelPropagateEnd(faultLabel, pointSF)); 1116accc9626SMatthew G. Knepley PetscCall(DMPlexPointQueueDestroy(&queue)); 1117accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1118accc9626SMatthew G. Knepley } 1119accc9626SMatthew G. Knepley 1120607ab7a9SMatthew G. Knepley /* 1121faedd622SMatthew G. Knepley We are adding three kinds of points here: 1122607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 1123faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 1124b6dfa339SMatthew G. Knepley Ghost: These are shared fault faces which are not owned by this process. These do not produce hybrid cells and do not replicate 1125607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 1126a6ae58d1SMatthew G. Knepley 1127a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 1128a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 1129607ab7a9SMatthew G. Knepley */ 11307db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 1131cd0c2139SMatthew G Knepley { 1132cd0c2139SMatthew G Knepley MPI_Comm comm; 1133607ab7a9SMatthew G. Knepley IS valueIS; 1134607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 1135607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 113618c5995bSMatthew G. Knepley IS *splitIS; 113718c5995bSMatthew G. Knepley IS *unsplitIS; 1138b6dfa339SMatthew G. Knepley IS ghostIS; 1139607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 114018c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 114136dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 114236dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 1143b6dfa339SMatthew G. Knepley PetscInt numGhostPoints; /* The number of unowned, shared fault faces */ 1144607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 114518c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 1146b6dfa339SMatthew G. Knepley const PetscInt *ghostPoints; /* Ghost fault faces */ 1147cd0c2139SMatthew G Knepley PetscSection coordSection; 1148cd0c2139SMatthew G Knepley Vec coordinates; 1149cd0c2139SMatthew G Knepley PetscScalar *coords; 1150a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 1151a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 1152607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 1153607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1154607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 115518c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1156cd0c2139SMatthew G Knepley 1157cd0c2139SMatthew G Knepley PetscFunctionBegin; 11589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 11599566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 11609566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 11619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 1162412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 11639566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(sdm, "celltype")); 1164cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 11659566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize)); 11669566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld)); 11679566063dSJacob Faibussowitsch PetscCall(PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints)); 1168607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 11699566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d])); 11709566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL)); 1171a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1172a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1173607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 117418c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1175607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1176a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1177607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 117818c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 117918c5995bSMatthew G. Knepley splitIS[d] = NULL; 118018c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 118159eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 118259eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 118359eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 118459eef20bSToby Isaac depthShift[2*d+1] = 0; 1185607ab7a9SMatthew G. Knepley } 1186b6dfa339SMatthew G. Knepley numGhostPoints = 0; 1187b6dfa339SMatthew G. Knepley ghostPoints = NULL; 1188cd0c2139SMatthew G Knepley if (label) { 11899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 11909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &numSP)); 11919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 1192cd0c2139SMatthew G Knepley } 1193cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1194cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1195cd0c2139SMatthew G Knepley 1196cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 11979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &splitIS[dep])); 119818c5995bSMatthew G. Knepley if (splitIS[dep]) { 11999566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(splitIS[dep], &numSplitPoints[dep])); 12009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(splitIS[dep], &splitPoints[dep])); 120118c5995bSMatthew G. Knepley } 12029566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep])); 120318c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 12049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep])); 12059566063dSJacob Faibussowitsch PetscCall(ISGetIndices(unsplitIS[dep], &unsplitPoints[dep])); 1206cd0c2139SMatthew G Knepley } 1207cd0c2139SMatthew G Knepley } 1208b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift2+dim-1, &ghostIS)); 1209b6dfa339SMatthew G. Knepley if (ghostIS) { 1210b6dfa339SMatthew G. Knepley PetscCall(ISGetLocalSize(ghostIS, &numGhostPoints)); 1211b6dfa339SMatthew G. Knepley PetscCall(ISGetIndices(ghostIS, &ghostPoints)); 1212b6dfa339SMatthew G. Knepley } 1213607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 121418c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 12152582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 12169566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPointSetUp_Internal(depth,depthShift)); 121759eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 121859eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 121959eef20bSToby Isaac * added points */ 12202582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 12219566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSizes_Internal(dm, depthShift, sdm)); 1222cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1223cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1224cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1225cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 12262582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 12274c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1228cd0c2139SMatthew G Knepley const PetscInt *support; 1229394c2f0fSMatthew G. Knepley DMPolytopeType ct; 12304c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1231cd0c2139SMatthew G Knepley 12329566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 12339566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, splitp, coneSize)); 12349566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 12359566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, supportSize)); 12369566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 12379566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, splitp, ct)); 1238cd0c2139SMatthew G Knepley if (dep == depth-1) { 12394c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 12404c367dbcSMatthew G. Knepley 1241cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 12429566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybcell, 2 + coneSize)); 1243412e9a14SMatthew G. Knepley switch (coneSize) { 12449566063dSJacob Faibussowitsch case 2: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR));break; 12459566063dSJacob Faibussowitsch case 3: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR));break; 12469566063dSJacob Faibussowitsch case 4: PetscCall(DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR));break; 1247412e9a14SMatthew G. Knepley } 1248b6dfa339SMatthew G. Knepley /* Shared fault faces with only one support cell now have two with the cohesive cell */ 1249b6dfa339SMatthew G. Knepley /* TODO Check thaat oldp has rootdegree == 1 */ 1250b6dfa339SMatthew G. Knepley if (supportSize == 1) { 1251b6dfa339SMatthew G. Knepley const PetscInt *support; 1252b6dfa339SMatthew G. Knepley PetscInt val; 1253b6dfa339SMatthew G. Knepley 1254b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1255b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &val)); 1256b6dfa339SMatthew G. Knepley if (val < 0) PetscCall(DMPlexSetSupportSize(sdm, splitp, 2)); 1257b6dfa339SMatthew G. Knepley else PetscCall(DMPlexSetSupportSize(sdm, newp, 2)); 1258b6dfa339SMatthew G. Knepley } 1259cd0c2139SMatthew G Knepley } else if (dep == 0) { 12604c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1261cd0c2139SMatthew G Knepley 12629566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12634c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1264cd0c2139SMatthew G Knepley PetscInt val; 1265cd0c2139SMatthew G Knepley 12669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12674c367dbcSMatthew G. Knepley if (val == 1) ++qf; 12684c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 12694c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1270cd0c2139SMatthew G Knepley } 12714c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 12729566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 12734c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 12749566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 12754c367dbcSMatthew G. Knepley /* Add hybrid edge */ 12769566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 12779566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 12789566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 1279cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 12804c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 12814c367dbcSMatthew G. Knepley 12829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 12834c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1284cd0c2139SMatthew G Knepley PetscInt val; 1285cd0c2139SMatthew G Knepley 12869566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 12874c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 12884c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 12894c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1290cd0c2139SMatthew G Knepley } 12914c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 12929566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qn+1)); 12934c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 12949566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, splitp, qp+1)); 12954c367dbcSMatthew G. Knepley /* Add hybrid face */ 12969566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 12979566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 12989566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1299cd0c2139SMatthew G Knepley } 1300cd0c2139SMatthew G Knepley } 1301cd0c2139SMatthew G Knepley } 130218c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 130318c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 130418c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 13052582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 130618c5995bSMatthew G. Knepley const PetscInt *support; 1307da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 130818c5995bSMatthew G. Knepley 13099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13109566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13119566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 131218c5995bSMatthew G. Knepley if (dep == 0) { 131318c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 131418c5995bSMatthew G. Knepley 131539254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 131639254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 13179566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 131839254ff6SMatthew G. Knepley if (e >= 0) ++qf; 131939254ff6SMatthew G. Knepley } 13209566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 132118c5995bSMatthew G. Knepley /* Add hybrid edge */ 13229566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybedge, 2)); 1323e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1324e1757548SMatthew G. Knepley PetscInt val; 1325e1757548SMatthew G. Knepley 13269566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1327e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1328da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1329da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1330e1757548SMatthew G. Knepley } 13319566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybedge, qf)); 13329566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR)); 133318c5995bSMatthew G. Knepley } else if (dep == dim-2) { 133418c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1335cd0c2139SMatthew G Knepley PetscInt val; 1336cd0c2139SMatthew G Knepley 1337da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13389566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1339da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1340da1dd7e4SMatthew G. Knepley else ++qf; 1341cd0c2139SMatthew G Knepley } 134218c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 13439566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, newp, qf+2)); 134418c5995bSMatthew G. Knepley /* Add hybrid face */ 1345da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13469566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1347da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1348da1dd7e4SMatthew G. Knepley } 13499566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(sdm, hybface, 4)); 13509566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupportSize(sdm, hybface, qf)); 13519566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR)); 1352cd0c2139SMatthew G Knepley } 1353cd0c2139SMatthew G Knepley } 1354cd0c2139SMatthew G Knepley } 1355cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 13569566063dSJacob Faibussowitsch PetscCall(DMSetUp(sdm)); 13579566063dSJacob Faibussowitsch PetscCall(DMPlexShiftPoints_Internal(dm, depthShift, sdm)); 13589566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew)); 13599566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew)); 1360cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1361cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1362cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1363cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 13642582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 13654c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1366cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 1367b5a892a1SMatthew G. Knepley DMPolytopeType ct; 13684c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1369cd0c2139SMatthew G Knepley 13709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, oldp, &ct)); 13719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 13729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 13739566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, oldp, &ornt)); 13749566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 13759566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 1376cd0c2139SMatthew G Knepley if (dep == depth-1) { 137796a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 13784c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1379cd0c2139SMatthew G Knepley const PetscInt *supportF; 1380cd0c2139SMatthew G Knepley 1381b6dfa339SMatthew G. Knepley coneONew[0] = coneONew[1] = -1000; 1382cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 13839566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(sdm, newp, &supportF)); 13849566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportF)); 1385cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1386cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1387cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13889566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 138918c5995bSMatthew G. Knepley if (v < 0) { 13909566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 139163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1); 13922582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 139396a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 139418c5995bSMatthew G. Knepley } else { 13954c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1396163235baSMatthew G. Knepley if (dep > 1) { 1397163235baSMatthew G. Knepley const PetscInt *econe; 1398163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1399163235baSMatthew G. Knepley 14009566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[q], &econeSize)); 14019566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cone[q], &econe)); 1402163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 14039566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs)); 14049566063dSJacob Faibussowitsch PetscCall(PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu)); 1405163235baSMatthew G. Knepley if (vs >= 0) continue; 140663a3b9bcSJacob Faibussowitsch PetscCheck(vu >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, econe[r], dep-2); 1407163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1408163235baSMatthew G. Knepley } 1409163235baSMatthew G. Knepley } 1410cd0c2139SMatthew G Knepley } 1411cd0c2139SMatthew G Knepley } 14129566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, &coneNew[2])); 14139566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, splitp, ornt)); 1414e537020bSMatthew G. Knepley /* Face support */ 1415b6dfa339SMatthew G. Knepley PetscInt vals[2]; 1416cd0c2139SMatthew G Knepley 1417b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &vals[0])); 1418b6dfa339SMatthew G. Knepley if (supportSize > 1) PetscCall(DMLabelGetValue(label, support[1], &vals[1])); 1419b6dfa339SMatthew G. Knepley else vals[1] = -vals[0]; 1420b6dfa339SMatthew G. Knepley PetscCheck(vals[0]*vals[1] < 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid support labels %" PetscInt_FMT " %" PetscInt_FMT, vals[0], vals[1]); 1421b6dfa339SMatthew G. Knepley 1422b6dfa339SMatthew G. Knepley for (s = 0; s < 2; ++s) { 1423b6dfa339SMatthew G. Knepley if (s >= supportSize) { 1424b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1425b6dfa339SMatthew G. Knepley /* Ghost old face: Replace negative side cell with cohesive cell */ 1426accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1427b6dfa339SMatthew G. Knepley } else { 1428b6dfa339SMatthew G. Knepley /* Ghost new face: Replace positive side cell with cohesive cell */ 1429accc9626SMatthew G. Knepley PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1430b6dfa339SMatthew G. Knepley } 1431b6dfa339SMatthew G. Knepley } else { 1432b6dfa339SMatthew G. Knepley if (vals[s] < 0) { 1433cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 14349566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, newp, s, hybcell)); 1435cd0c2139SMatthew G Knepley } else { 1436cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 14379566063dSJacob Faibussowitsch PetscCall(DMPlexInsertSupport(sdm, splitp, s, hybcell)); 1438b6dfa339SMatthew G. Knepley } 1439b6dfa339SMatthew G. Knepley } 1440b6dfa339SMatthew G. Knepley } 1441b6dfa339SMatthew G. Knepley /* Get orientation for cohesive face using the positive side cell */ 1442e537020bSMatthew G. Knepley { 1443e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1444b6dfa339SMatthew G. Knepley PetscInt nconeSize, nc, ocell; 1445accc9626SMatthew G. Knepley PetscBool flip = PETSC_FALSE; 1446e537020bSMatthew G. Knepley 1447b6dfa339SMatthew G. Knepley if (supportSize > 1) {ocell = vals[0] < 0 ? support[1] : support[0];} 1448b6dfa339SMatthew G. Knepley else {ocell = support[0]; flip = vals[0] < 0 ? PETSC_TRUE : PETSC_FALSE;} 1449b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetConeSize(dm, ocell, &nconeSize)); 1450b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetCone(dm, ocell, &ncone)); 1451e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetConeOrientation(dm, ocell, &nconeO)); 1452e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1453e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1454b6dfa339SMatthew G. Knepley coneONew[0] = flip ? -(nconeO[nc]+1) : nconeO[nc]; 1455e537020bSMatthew G. Knepley break; 1456cd0c2139SMatthew G Knepley } 1457cd0c2139SMatthew G Knepley } 1458b6dfa339SMatthew G. Knepley PetscCheck(nc < nconeSize, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %" PetscInt_FMT " in neighboring cell %" PetscInt_FMT, oldp, ocell); 1459e537020bSMatthew G. Knepley } 14604c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1461b6dfa339SMatthew G. Knepley { 1462b6dfa339SMatthew G. Knepley const PetscInt No = DMPolytopeTypeGetNumArrangments(ct)/2; 1463b6dfa339SMatthew G. Knepley PetscCheck((coneONew[0] >= -No) && (coneONew[0] < No), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid %s orientation %" PetscInt_FMT, DMPolytopeTypes[ct], coneONew[0]); 1464b6dfa339SMatthew G. Knepley } 1465b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, coneONew[0]); 1466b5a892a1SMatthew G. Knepley 1467fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 14684c367dbcSMatthew G. Knepley coneNew[1] = splitp; 14694c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1470e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1471412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1472b5a892a1SMatthew G. Knepley const PetscInt qa = arr[q*2+0]; 1473b5a892a1SMatthew G. Knepley const PetscInt qo = arr[q*2+1]; 1474b5a892a1SMatthew G. Knepley DMPolytopeType ft = dep == 2 ? DM_POLYTOPE_SEGMENT : DM_POLYTOPE_POINT; 1475412e9a14SMatthew G. Knepley 14769566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 147718c5995bSMatthew G. Knepley if (v < 0) { 14789566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[qa], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 147918c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 148018c5995bSMatthew G. Knepley } else { 148118c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 148218c5995bSMatthew G. Knepley } 1483b5a892a1SMatthew G. Knepley coneONew[2+q] = DMPolytopeTypeComposeOrientation(ft, qo, ornt[qa]); 1484e537020bSMatthew G. Knepley } 14859566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybcell, coneNew)); 14869566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(sdm, hybcell, coneONew)); 148796a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 14889566063dSJacob Faibussowitsch if (hasUnsplit) PetscCall(DMLabelSetValue(label, -hybcell, dim)); 1489cd0c2139SMatthew G Knepley } else if (dep == 0) { 14904c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1491cd0c2139SMatthew G Knepley 1492cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 14934c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1494cd0c2139SMatthew G Knepley PetscInt val; 1495cd0c2139SMatthew G Knepley 14969566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1497cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 14982582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1499cd0c2139SMatthew G Knepley } 1500cd0c2139SMatthew G Knepley } 15014c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 15029566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1503cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 15044c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1505cd0c2139SMatthew G Knepley PetscInt val, edge; 1506cd0c2139SMatthew G Knepley 15079566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1508cd0c2139SMatthew G Knepley if (val == 1) { 15099566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 151063a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15114c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1512cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 15132582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1514cd0c2139SMatthew G Knepley } 1515cd0c2139SMatthew G Knepley } 15164c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 15179566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15184c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1519cd0c2139SMatthew G Knepley coneNew[0] = newp; 1520cd0c2139SMatthew G Knepley coneNew[1] = splitp; 15219566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 15224c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15234c367dbcSMatthew G. Knepley PetscInt val, edge; 15244c367dbcSMatthew G. Knepley 15259566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15264c367dbcSMatthew G. Knepley if (val == 1) { 15279566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 152863a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 15294c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 15304c367dbcSMatthew G. Knepley } 15314c367dbcSMatthew G. Knepley } 15329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1533cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 15344c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15354c367dbcSMatthew G. Knepley 1536cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1537cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1538cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 15399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v)); 1540e1757548SMatthew G. Knepley if (v < 0) { 15419566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 154263a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[q], dep-1); 15432582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1544e1757548SMatthew G. Knepley } else { 15454c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1546cd0c2139SMatthew G Knepley } 1547e1757548SMatthew G. Knepley } 15489566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, splitp, coneNew)); 1549cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1550cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1551cd0c2139SMatthew G Knepley PetscInt val; 1552cd0c2139SMatthew G Knepley 15539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15544c367dbcSMatthew G. Knepley if (val == dim-1) { 15552582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 15564c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 15572582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1558cd0c2139SMatthew G Knepley } 1559cd0c2139SMatthew G Knepley } 1560b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15619566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1562cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1563cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1564cd0c2139SMatthew G Knepley PetscInt val, face; 1565cd0c2139SMatthew G Knepley 15669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 1567cd0c2139SMatthew G Knepley if (val == dim-1) { 15689566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 156963a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15704c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1571cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 15722582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1573cd0c2139SMatthew G Knepley } 1574cd0c2139SMatthew G Knepley } 1575b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 15769566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, splitp, supportNew)); 15774c367dbcSMatthew G. Knepley /* Hybrid face */ 15784c367dbcSMatthew G. Knepley coneNew[0] = newp; 15794c367dbcSMatthew G. Knepley coneNew[1] = splitp; 15804c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 15814c367dbcSMatthew G. Knepley PetscInt vertex; 15829566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex)); 1583e1757548SMatthew G. Knepley if (vertex < 0) { 15849566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex)); 158563a3b9bcSJacob Faibussowitsch PetscCheck(vertex >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %" PetscInt_FMT " in split or unsplit points of depth %" PetscInt_FMT, cone[v], dep-1); 1586e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1587e1757548SMatthew G. Knepley } else { 15884c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 15894c367dbcSMatthew G. Knepley } 1590e1757548SMatthew G. Knepley } 15919566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 15924c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 15934c367dbcSMatthew G. Knepley PetscInt val, face; 15944c367dbcSMatthew G. Knepley 15959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 15964c367dbcSMatthew G. Knepley if (val == dim-1) { 15979566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 159863a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[e]); 15994c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 16004c367dbcSMatthew G. Knepley } 16014c367dbcSMatthew G. Knepley } 16029566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1603cd0c2139SMatthew G Knepley } 1604cd0c2139SMatthew G Knepley } 1605cd0c2139SMatthew G Knepley } 160618c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 160718c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 160818c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 16092582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 1610b5a892a1SMatthew G. Knepley const PetscInt *cone, *support; 1611e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 161218c5995bSMatthew G. Knepley 16139566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, oldp, &coneSize)); 16149566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, oldp, &cone)); 16159566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, oldp, &supportSize)); 16169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, oldp, &support)); 161718c5995bSMatthew G. Knepley if (dep == 0) { 161818c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 161918c5995bSMatthew G. Knepley 162018c5995bSMatthew G. Knepley /* Unsplit vertex */ 16219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 162218c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 16232582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 16249566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e)); 162518c5995bSMatthew G. Knepley if (e >= 0) { 162618c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 162718c5995bSMatthew G. Knepley } 162818c5995bSMatthew G. Knepley } 162918c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 163018c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 163163a3b9bcSJacob Faibussowitsch PetscCheck(q == supportSizeNew,comm, PETSC_ERR_ARG_WRONG, "Support size %" PetscInt_FMT " != %" PetscInt_FMT " for vertex %" PetscInt_FMT, q, supportSizeNew, newp); 16329566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 163318c5995bSMatthew G. Knepley /* Hybrid edge */ 163418c5995bSMatthew G. Knepley coneNew[0] = newp; 163518c5995bSMatthew G. Knepley coneNew[1] = newp; 16369566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybedge, coneNew)); 163718c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 163818c5995bSMatthew G. Knepley PetscInt val, edge; 163918c5995bSMatthew G. Knepley 16409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[e], &val)); 164118c5995bSMatthew G. Knepley if (val == 1) { 16429566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge)); 164363a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a split edge", support[e]); 164418c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1645e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 16469566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge)); 164763a3b9bcSJacob Faibussowitsch PetscCheck(edge >= 0,comm, PETSC_ERR_ARG_WRONG, "Edge %" PetscInt_FMT " is not a unsplit edge", support[e]); 1648e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 164918c5995bSMatthew G. Knepley } 165018c5995bSMatthew G. Knepley } 16519566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybedge, supportNew)); 1652e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1653e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1654e1757548SMatthew G. Knepley 1655da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1656e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1657e1757548SMatthew G. Knepley PetscInt val, face; 1658e1757548SMatthew G. Knepley 16599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1660e1757548SMatthew G. Knepley if (val == dim-1) { 16619566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 166263a3b9bcSJacob Faibussowitsch PetscCheck(face >= 0,comm, PETSC_ERR_ARG_WRONG, "Face %" PetscInt_FMT " is not a split face", support[f]); 16632582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1664e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1665e1757548SMatthew G. Knepley } else { 16662582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1667e1757548SMatthew G. Knepley } 1668e1757548SMatthew G. Knepley } 1669e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1670e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 16719566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, newp, &supportSizeNew)); 167263a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, newp, qf, supportSizeNew); 16739566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, newp, supportNew)); 1674e1757548SMatthew G. Knepley /* Add hybrid face */ 1675e1757548SMatthew G. Knepley coneNew[0] = newp; 1676212cc919SMatthew G. Knepley coneNew[1] = newp; 16779566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 167863a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[0]); 1679212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 16809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v)); 168163a3b9bcSJacob Faibussowitsch PetscCheck(v >= 0,comm, PETSC_ERR_ARG_WRONG, "Vertex %" PetscInt_FMT " is not an unsplit vertex", cone[1]); 1682e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 16839566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(sdm, hybface, coneNew)); 1684da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1685da1dd7e4SMatthew G. Knepley PetscInt val, face; 1686da1dd7e4SMatthew G. Knepley 16879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, support[f], &val)); 1688da1dd7e4SMatthew G. Knepley if (val == dim-1) { 16899566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face)); 1690da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1691da1dd7e4SMatthew G. Knepley } 1692da1dd7e4SMatthew G. Knepley } 16939566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(sdm, hybface, &supportSizeNew)); 169463a3b9bcSJacob Faibussowitsch PetscCheck(qf == supportSizeNew,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %" PetscInt_FMT " is %" PetscInt_FMT " != %" PetscInt_FMT, hybface, qf, supportSizeNew); 16959566063dSJacob Faibussowitsch PetscCall(DMPlexSetSupport(sdm, hybface, supportNew)); 1696cd0c2139SMatthew G Knepley } 1697cd0c2139SMatthew G Knepley } 1698cd0c2139SMatthew G Knepley } 1699cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1700cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1701cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1702cd0c2139SMatthew G Knepley IS pIS; 1703cd0c2139SMatthew G Knepley PetscInt numPoints; 1704cd0c2139SMatthew G Knepley const PetscInt *points; 1705cd0c2139SMatthew G Knepley 1706cd0c2139SMatthew G Knepley if (dep >= 0) continue; 17079566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dep, &pIS)); 1708cd0c2139SMatthew G Knepley if (!pIS) continue; 1709cd0c2139SMatthew G Knepley dep = -dep - shift; 17109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pIS, &numPoints)); 17119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pIS, &points)); 1712cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1713cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 17142582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1715cd0c2139SMatthew G Knepley const PetscInt *cone; 1716cd0c2139SMatthew G Knepley PetscInt coneSize, c; 171750cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1718cd0c2139SMatthew G Knepley 1719cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1720cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 17219566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(sdm, newp, &coneSize)); 17229566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(sdm, newp, &cone)); 1723cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1724e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1725cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1726cd0c2139SMatthew G Knepley 17279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, coldp, &val)); 1728cd0c2139SMatthew G Knepley if (val == dep-1) { 17299566063dSJacob Faibussowitsch PetscCall(PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp)); 173063a3b9bcSJacob Faibussowitsch PetscCheck(cp >= 0,comm, PETSC_ERR_ARG_WRONG, "Point %" PetscInt_FMT " is not a split point of dimension %" PetscInt_FMT, oldp, dep-1); 1731cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 17329566063dSJacob Faibussowitsch PetscCall(DMPlexInsertCone(sdm, newp, c, csplitp)); 173350cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1734cd0c2139SMatthew G Knepley } 1735cd0c2139SMatthew G Knepley } 17364a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 173728b400f6SJacob Faibussowitsch /* PetscCheck(replaced,comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1738cd0c2139SMatthew G Knepley } 17399566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pIS, &points)); 17409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pIS)); 1741cd0c2139SMatthew G Knepley } 1742fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 17439566063dSJacob Faibussowitsch PetscCall(DMPlexShiftCoordinates_Internal(dm, depthShift, sdm)); 17449566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(sdm, &coordSection)); 17459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(sdm, &coordinates)); 17469566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 1747cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 17482582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1749cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1750cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1751cd0c2139SMatthew G Knepley 17529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, newp, &dof)); 17539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, newp, &off)); 17549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, splitp, &soff)); 1755cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1756cd0c2139SMatthew G Knepley } 17579566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1758fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 17599566063dSJacob Faibussowitsch PetscCall(DMPlexShiftSF_Internal(dm, depthShift, sdm)); 1760b6dfa339SMatthew G. Knepley /* TODO We need to associate the ghost points with the correct replica */ 1761fa8e8ae5SToby Isaac /* Step 9: Labels */ 17629566063dSJacob Faibussowitsch PetscCall(DMPlexShiftLabels_Internal(dm, depthShift, sdm)); 17639566063dSJacob Faibussowitsch PetscCall(DMPlexCreateVTKLabel_Internal(dm, PETSC_FALSE, sdm)); 17649566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(sdm, &numLabels)); 1765cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1766cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 17672582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1768cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1769cd0c2139SMatthew G Knepley PetscInt l; 1770cd0c2139SMatthew G Knepley 17717db7e0a7SMatthew G. Knepley if (splitLabel) { 17727db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 17737db7e0a7SMatthew G. Knepley 17749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, newp, val)); 17759566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(splitLabel, splitp, -val)); 17767db7e0a7SMatthew G. Knepley } 1777cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1778cd0c2139SMatthew G Knepley DMLabel mlabel; 1779cd0c2139SMatthew G Knepley const char *lname; 1780cd0c2139SMatthew G Knepley PetscInt val; 17819a356370SMatthew G. Knepley PetscBool isDepth; 1782cd0c2139SMatthew G Knepley 17839566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(sdm, l, &lname)); 17849566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 17859a356370SMatthew G. Knepley if (isDepth) continue; 17869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(sdm, lname, &mlabel)); 17879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(mlabel, newp, &val)); 1788cd0c2139SMatthew G Knepley if (val >= 0) { 17899566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(mlabel, splitp, val)); 1790cd0c2139SMatthew G Knepley } 1791cd0c2139SMatthew G Knepley } 1792cd0c2139SMatthew G Knepley } 1793cd0c2139SMatthew G Knepley } 1794cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1795cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1796cd0c2139SMatthew G Knepley 1797cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 17989566063dSJacob Faibussowitsch if (splitIS[dep]) PetscCall(ISRestoreIndices(splitIS[dep], &splitPoints[dep])); 17999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&splitIS[dep])); 18009566063dSJacob Faibussowitsch if (unsplitIS[dep]) PetscCall(ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep])); 18019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&unsplitIS[dep])); 1802cd0c2139SMatthew G Knepley } 1803b6dfa339SMatthew G. Knepley if (ghostIS) PetscCall(ISRestoreIndices(ghostIS, &ghostPoints)); 1804b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&ghostIS)); 1805cd0c2139SMatthew G Knepley if (label) { 18069566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 18079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 1808cd0c2139SMatthew G Knepley } 18090d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 18109566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(sdm, d, NULL, &pEnd)); 181136dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 18120d4d4d06SMatthew G. Knepley } 18139566063dSJacob Faibussowitsch PetscCall(PetscFree3(coneNew, coneONew, supportNew)); 18149566063dSJacob Faibussowitsch PetscCall(PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld)); 18159566063dSJacob Faibussowitsch PetscCall(PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints)); 1816cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1817cd0c2139SMatthew G Knepley } 1818cd0c2139SMatthew G Knepley 1819cd0c2139SMatthew G Knepley /*@C 1820cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1821cd0c2139SMatthew G Knepley 1822cd0c2139SMatthew G Knepley Collective on dm 1823cd0c2139SMatthew G Knepley 1824cd0c2139SMatthew G Knepley Input Parameters: 1825cd0c2139SMatthew G Knepley + dm - The original DM 182653156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1827cd0c2139SMatthew G Knepley 1828cd0c2139SMatthew G Knepley Output Parameters: 18297db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1830cd0c2139SMatthew G Knepley - dmSplit - The new DM 1831cd0c2139SMatthew G Knepley 1832cd0c2139SMatthew G Knepley Level: developer 1833cd0c2139SMatthew G Knepley 1834db781477SPatrick Sanan .seealso: `DMCreate()`, `DMPlexLabelCohesiveComplete()` 1835cd0c2139SMatthew G Knepley @*/ 18367db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1837cd0c2139SMatthew G Knepley { 1838cd0c2139SMatthew G Knepley DM sdm; 1839cd0c2139SMatthew G Knepley PetscInt dim; 1840cd0c2139SMatthew G Knepley 1841cd0c2139SMatthew G Knepley PetscFunctionBegin; 1842cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1843064a246eSJacob Faibussowitsch PetscValidPointer(dmSplit, 4); 18449566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &sdm)); 18459566063dSJacob Faibussowitsch PetscCall(DMSetType(sdm, DMPLEX)); 18469566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18479566063dSJacob Faibussowitsch PetscCall(DMSetDimension(sdm, dim)); 1848cd0c2139SMatthew G Knepley switch (dim) { 1849cd0c2139SMatthew G Knepley case 2: 1850cd0c2139SMatthew G Knepley case 3: 18519566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm)); 1852cd0c2139SMatthew G Knepley break; 1853cd0c2139SMatthew G Knepley default: 185463a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %" PetscInt_FMT, dim); 1855cd0c2139SMatthew G Knepley } 1856cd0c2139SMatthew G Knepley *dmSplit = sdm; 1857cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1858cd0c2139SMatthew G Knepley } 1859cd0c2139SMatthew G Knepley 18600f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 18610f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 18620f66a230SMatthew G. Knepley { 18630f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 18640f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 18650f66a230SMatthew G. Knepley 18660f66a230SMatthew G. Knepley PetscFunctionBegin; 18670f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 18689566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 18699566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 18709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 18719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, cell, &ornt)); 18720f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 18730f66a230SMatthew G. Knepley if (cone[c] == face) { 18740f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 18750f66a230SMatthew G. Knepley 18760f66a230SMatthew G. Knepley if (subdm) { 18770f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 18780f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 18790f66a230SMatthew G. Knepley 18809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cell, numSubpoints, subpoints, &subpoint)); 18819566063dSJacob Faibussowitsch PetscCall(PetscFindInt(face, numSubpoints, subpoints, &subface)); 18829566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 18839566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(subdm, subpoint, &subcone)); 18849566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(subdm, subpoint, &subornt)); 18850f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 18860f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 18870f66a230SMatthew G. Knepley o = subornt[0]; 18880f66a230SMatthew G. Knepley break; 18890f66a230SMatthew G. Knepley } 18900f66a230SMatthew G. Knepley } 189163a3b9bcSJacob Faibussowitsch PetscCheck(sc < subconeSize,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %" PetscInt_FMT " (%" PetscInt_FMT ") in cone for subpoint %" PetscInt_FMT " (%" PetscInt_FMT ")", subface, face, subpoint, cell); 18920f66a230SMatthew G. Knepley } 18930f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 18940f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 18950f66a230SMatthew G. Knepley break; 18960f66a230SMatthew G. Knepley } 18970f66a230SMatthew G. Knepley } 189863a3b9bcSJacob Faibussowitsch PetscCheck(c != coneSize,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %" PetscInt_FMT " in split face %" PetscInt_FMT " support does not have it in the cone", cell, face); 18990f66a230SMatthew G. Knepley PetscFunctionReturn(0); 19000f66a230SMatthew G. Knepley } 19010f66a230SMatthew G. Knepley 1902accc9626SMatthew G. Knepley static PetscErrorCode CheckFaultEdge_Private(DM dm, DMLabel label) 1903accc9626SMatthew G. Knepley { 1904accc9626SMatthew G. Knepley IS facePosIS, faceNegIS, dimIS; 1905accc9626SMatthew G. Knepley const PetscInt *points; 1906accc9626SMatthew G. Knepley PetscInt dim, numPoints, p, shift = 100, shift2 = 200; 1907accc9626SMatthew G. Knepley 1908accc9626SMatthew G. Knepley PetscFunctionBegin; 1909accc9626SMatthew G. Knepley PetscCall(DMGetDimension(dm, &dim)); 1910accc9626SMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 1911accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, shift+dim-1, &facePosIS)); 1912accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS)); 1913accc9626SMatthew G. Knepley if (!facePosIS || !faceNegIS) { 1914accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1915accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1916accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1917accc9626SMatthew G. Knepley } 1918accc9626SMatthew G. Knepley PetscCall(ISExpand(facePosIS, faceNegIS, &dimIS)); 1919accc9626SMatthew G. Knepley PetscCall(ISDestroy(&facePosIS)); 1920accc9626SMatthew G. Knepley PetscCall(ISDestroy(&faceNegIS)); 1921accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 1922accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 1923accc9626SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1924accc9626SMatthew G. Knepley const PetscInt point = points[p]; 1925accc9626SMatthew G. Knepley const PetscInt *support; 1926accc9626SMatthew G. Knepley PetscInt supportSize, valA, valB; 1927accc9626SMatthew G. Knepley 1928accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 1929accc9626SMatthew G. Knepley if (supportSize != 2) continue; 1930accc9626SMatthew G. Knepley PetscCall(DMPlexGetSupport(dm, point, &support)); 1931accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[0], &valA)); 1932accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, support[1], &valB)); 1933accc9626SMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 1934accc9626SMatthew G. Knepley if (valA*valB > 0) continue; 1935e1a13daeSMatthew G. Knepley /* Check that this face is not incident on only unsplit faces, meaning has at least one split face */ 1936e1a13daeSMatthew G. Knepley { 1937e1a13daeSMatthew G. Knepley PetscInt *closure = NULL; 1938e1a13daeSMatthew G. Knepley PetscBool split = PETSC_FALSE; 1939e1a13daeSMatthew G. Knepley PetscInt closureSize, cl; 1940e1a13daeSMatthew G. Knepley 1941e1a13daeSMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1942e1a13daeSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1943e1a13daeSMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1944e1a13daeSMatthew G. Knepley if ((valA >= 0) && (valA <= dim)) {split = PETSC_TRUE; break;} 1945e1a13daeSMatthew G. Knepley } 1946e1a13daeSMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1947e1a13daeSMatthew G. Knepley if (!split) continue; 1948e1a13daeSMatthew G. Knepley } 1949accc9626SMatthew G. Knepley /* Split the face */ 1950accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &valA)); 1951accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, valA)); 1952accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, dim-1)); 1953accc9626SMatthew G. Knepley /* Label its closure: 1954accc9626SMatthew G. Knepley unmarked: label as unsplit 1955accc9626SMatthew G. Knepley incident: relabel as split 1956accc9626SMatthew G. Knepley split: do nothing 1957accc9626SMatthew G. Knepley */ 1958accc9626SMatthew G. Knepley { 1959accc9626SMatthew G. Knepley PetscInt *closure = NULL; 1960accc9626SMatthew G. Knepley PetscInt closureSize, cl, dep; 1961accc9626SMatthew G. Knepley 1962accc9626SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1963accc9626SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1964accc9626SMatthew G. Knepley PetscCall(DMLabelGetValue(label, closure[cl], &valA)); 1965accc9626SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 1966accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1967accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], shift2+dep)); 1968accc9626SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 1969accc9626SMatthew G. Knepley PetscCall(DMPlexGetPointDepth(dm, closure[cl], &dep)); 1970accc9626SMatthew G. Knepley PetscCall(DMLabelClearValue(label, closure[cl], valA)); 1971accc9626SMatthew G. Knepley PetscCall(DMLabelSetValue(label, closure[cl], dep)); 1972accc9626SMatthew G. Knepley } 1973accc9626SMatthew G. Knepley } 1974accc9626SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 1975accc9626SMatthew G. Knepley } 1976accc9626SMatthew G. Knepley } 1977accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 1978accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 1979accc9626SMatthew G. Knepley PetscFunctionReturn(0); 1980accc9626SMatthew G. Knepley } 1981accc9626SMatthew G. Knepley 1982cd0c2139SMatthew G Knepley /*@ 19830f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1984cd0c2139SMatthew G Knepley to complete the surface 1985cd0c2139SMatthew G Knepley 1986cd0c2139SMatthew G Knepley Input Parameters: 1987cd0c2139SMatthew G Knepley + dm - The DM 19880f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 19890f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1990caf9e14dSMatthew G. Knepley . bvalue - Value of DMLabel marking the vertices on the boundary 1991bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 199247946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1993cd0c2139SMatthew G Knepley 1994cd0c2139SMatthew G Knepley Output Parameter: 1995cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1996cd0c2139SMatthew G Knepley 19970f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 19980f66a230SMatthew G. Knepley 1999cd0c2139SMatthew G Knepley Level: developer 2000cd0c2139SMatthew G Knepley 2001db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelComplete()` 2002cd0c2139SMatthew G Knepley @*/ 2003caf9e14dSMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscInt bvalue, PetscBool flip, DM subdm) 2004cd0c2139SMatthew G Knepley { 2005d90583fdSMatthew G. Knepley DMLabel depthLabel; 2006accc9626SMatthew G. Knepley IS dimIS, subpointIS = NULL; 200747946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 2008bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 2009accc9626SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, shift3 = 300, dim, depth, numPoints, numSubpoints, p, val; 2010cd0c2139SMatthew G Knepley 2011cd0c2139SMatthew G Knepley PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 20139566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 20149566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depthLabel)); 201547946fd8SMatthew G. Knepley if (subdm) { 20169566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 201747946fd8SMatthew G. Knepley if (subpointIS) { 20189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 20199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 202047946fd8SMatthew G. Knepley } 202147946fd8SMatthew G. Knepley } 2022d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 20239566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 2024accc9626SMatthew G. Knepley if (!dimIS) goto divide; 20259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(dimIS, &numPoints)); 20269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dimIS, &points)); 2027d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 2028cd0c2139SMatthew G Knepley const PetscInt *support; 2029cd0c2139SMatthew G Knepley PetscInt supportSize, s; 2030cd0c2139SMatthew G Knepley 20319566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, points[p], &supportSize)); 2032c4419245SMatthew G. Knepley #if 0 2033c4419245SMatthew G. Knepley if (supportSize != 2) { 2034c4419245SMatthew G. Knepley const PetscInt *lp; 2035c4419245SMatthew G. Knepley PetscInt Nlp, pind; 2036c4419245SMatthew G. Knepley 2037c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 2038c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 20399566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL)); 20409566063dSJacob Faibussowitsch PetscCall(PetscFindInt(points[p], Nlp, lp, &pind)); 204163a3b9bcSJacob Faibussowitsch PetscCheck(pind >= 0,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %" PetscInt_FMT " has %" PetscInt_FMT " != 2 supports, and the face is not shared with another process", points[p], supportSize); 2042c4419245SMatthew G. Knepley } 2043c4419245SMatthew G. Knepley #endif 20449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, points[p], &support)); 2045cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 20460f66a230SMatthew G. Knepley const PetscInt *cone; 2047cd0c2139SMatthew G Knepley PetscInt coneSize, c; 20480f66a230SMatthew G. Knepley PetscBool pos; 2049cd0c2139SMatthew G Knepley 20509566063dSJacob Faibussowitsch PetscCall(GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos)); 20519566063dSJacob Faibussowitsch if (pos) PetscCall(DMLabelSetValue(label, support[s], rev*(shift+dim))); 20529566063dSJacob Faibussowitsch else PetscCall(DMLabelSetValue(label, support[s], -rev*(shift+dim))); 20530f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 20540f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 20559566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 20569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 2057cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 2058cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 2059cd0c2139SMatthew G Knepley 20609566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2061cd0c2139SMatthew G Knepley if (val == -1) { 2062cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 2063cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 2064cd0c2139SMatthew G Knepley 20659566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2066cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2067cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 2068a0541d8aSMatthew G. Knepley PetscInt bval = -1; 2069cd0c2139SMatthew G Knepley 20709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, clp, &val)); 20719566063dSJacob Faibussowitsch if (blabel) PetscCall(DMLabelGetValue(blabel, clp, &bval)); 2072a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 20739566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1))); 2074cd0c2139SMatthew G Knepley break; 2075cd0c2139SMatthew G Knepley } 2076cd0c2139SMatthew G Knepley } 20779566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2078cd0c2139SMatthew G Knepley } 2079cd0c2139SMatthew G Knepley } 2080cd0c2139SMatthew G Knepley } 2081cd0c2139SMatthew G Knepley } 2082accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2083accc9626SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2084a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 208586200784SMatthew G. Knepley if (blabel) { 2086accc9626SMatthew G. Knepley IS bdIS; 2087accc9626SMatthew G. Knepley 2088caf9e14dSMatthew G. Knepley PetscCall(DMLabelGetStratumIS(blabel, bvalue, &bdIS)); 2089accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(bdIS, &numPoints)); 2090accc9626SMatthew G. Knepley PetscCall(ISGetIndices(bdIS, &points)); 2091a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2092a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 2093a0541d8aSMatthew G. Knepley PetscInt val, bval; 2094a0541d8aSMatthew G. Knepley 20959566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2096a0541d8aSMatthew G. Knepley if (bval >= 0) { 20979566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2098f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 2099f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 21009566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(blabel, point, bval)); 2101f7019248SMatthew G. Knepley } 2102f7019248SMatthew G. Knepley } 2103f7019248SMatthew G. Knepley } 2104f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2105f7019248SMatthew G. Knepley const PetscInt point = points[p]; 2106f7019248SMatthew G. Knepley PetscInt val, bval; 2107f7019248SMatthew G. Knepley 21089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, point, &bval)); 2109f7019248SMatthew G. Knepley if (bval >= 0) { 211086200784SMatthew G. Knepley const PetscInt *cone, *support; 211186200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 211286200784SMatthew G. Knepley 2113a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 21149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, &val)); 2115e1a13daeSMatthew G. Knepley PetscCheck(val >= 0 && val <= dim, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be part of the fault", point, val); 21169566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, val)); 21179566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, shift2+val)); 21182c06a818SMatthew G. Knepley /* Check for cross-edge 21192c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 212086200784SMatthew G. Knepley if (val != 0) continue; 21219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 21229566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 212386200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 21249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, support[s], &cone)); 21259566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, support[s], &coneSize)); 212663a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 2, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %" PetscInt_FMT " has %" PetscInt_FMT " vertices != 2", support[s], coneSize); 21279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[0], &valA)); 21289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, cone[1], &valB)); 21299566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(blabel, support[s], &valE)); 21309566063dSJacob Faibussowitsch if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) PetscCall(DMLabelSetValue(blabel, support[s], 2)); 213186200784SMatthew G. Knepley } 2132a0541d8aSMatthew G. Knepley } 2133a0541d8aSMatthew G. Knepley } 2134accc9626SMatthew G. Knepley PetscCall(ISRestoreIndices(bdIS, &points)); 2135accc9626SMatthew G. Knepley PetscCall(ISDestroy(&bdIS)); 2136a0541d8aSMatthew G. Knepley } 2137b6dfa339SMatthew G. Knepley /* Mark ghost fault cells */ 2138b6dfa339SMatthew G. Knepley { 2139b6dfa339SMatthew G. Knepley PetscSF sf; 2140b6dfa339SMatthew G. Knepley const PetscInt *leaves; 2141b6dfa339SMatthew G. Knepley PetscInt Nl, l; 2142b6dfa339SMatthew G. Knepley 2143b6dfa339SMatthew G. Knepley PetscCall(DMGetPointSF(dm, &sf)); 2144b6dfa339SMatthew G. Knepley PetscCall(PetscSFGetGraph(sf, NULL, &Nl, &leaves, NULL)); 2145accc9626SMatthew G. Knepley PetscCall(DMLabelGetStratumIS(label, dim-1, &dimIS)); 2146accc9626SMatthew G. Knepley if (!dimIS) goto divide; 2147accc9626SMatthew G. Knepley PetscCall(ISGetLocalSize(dimIS, &numPoints)); 2148accc9626SMatthew G. Knepley PetscCall(ISGetIndices(dimIS, &points)); 2149b6dfa339SMatthew G. Knepley if (Nl > 0) { 2150b6dfa339SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2151b6dfa339SMatthew G. Knepley const PetscInt point = points[p]; 2152b6dfa339SMatthew G. Knepley PetscInt val; 2153b6dfa339SMatthew G. Knepley 2154b6dfa339SMatthew G. Knepley PetscCall(PetscFindInt(point, Nl, leaves, &l)); 2155b6dfa339SMatthew G. Knepley if (l >= 0) { 2156b6dfa339SMatthew G. Knepley PetscInt *closure = NULL; 2157b6dfa339SMatthew G. Knepley PetscInt closureSize, cl; 2158b6dfa339SMatthew G. Knepley 2159b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, point, &val)); 2160b6dfa339SMatthew G. Knepley PetscCheck((val == dim-1) || (val == shift2+dim-1), PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " has label value %" PetscInt_FMT ", should be a fault face", point, val); 2161b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, point, val)); 2162b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, point, shift3+val)); 2163b6dfa339SMatthew G. Knepley PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2164accc9626SMatthew G. Knepley for (cl = 2; cl < closureSize*2; cl += 2) { 2165b6dfa339SMatthew G. Knepley const PetscInt clp = closure[cl]; 2166b6dfa339SMatthew G. Knepley 2167b6dfa339SMatthew G. Knepley PetscCall(DMLabelGetValue(label, clp, &val)); 2168b6dfa339SMatthew G. Knepley PetscCheck(val != -1, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %" PetscInt_FMT " is missing from label, but is in the closure of a fault face", point); 2169b6dfa339SMatthew G. Knepley PetscCall(DMLabelClearValue(label, clp, val)); 2170b6dfa339SMatthew G. Knepley PetscCall(DMLabelSetValue(label, clp, shift3+val)); 2171b6dfa339SMatthew G. Knepley } 2172b6dfa339SMatthew G. Knepley PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure)); 2173b6dfa339SMatthew G. Knepley } 2174b6dfa339SMatthew G. Knepley } 2175b6dfa339SMatthew G. Knepley } 2176b6dfa339SMatthew G. Knepley PetscCall(ISRestoreIndices(dimIS, &points)); 2177b6dfa339SMatthew G. Knepley PetscCall(ISDestroy(&dimIS)); 2178accc9626SMatthew G. Knepley } 2179accc9626SMatthew G. Knepley divide: 2180b6dfa339SMatthew G. Knepley if (subpointIS) PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 2181accc9626SMatthew G. Knepley PetscCall(DMPlexLabelFaultHalo(dm, label)); 2182accc9626SMatthew G. Knepley PetscCall(CheckFaultEdge_Private(dm, label)); 2183cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2184cd0c2139SMatthew G Knepley } 2185cd0c2139SMatthew G Knepley 2186720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2187720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2188720e594eSMatthew G. Knepley { 2189720e594eSMatthew G. Knepley IS subpointIS; 2190720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2191720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2192720e594eSMatthew G. Knepley 2193720e594eSMatthew G. Knepley PetscFunctionBegin; 2194720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 21959566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defaultValue)); 21969566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpointIS)); 2197720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 21989566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd)); 21999566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 22009566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &dmpoints)); 2201720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2202720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2203720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2204720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2205720e594eSMatthew G. Knepley 22069566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2207720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2208720e594eSMatthew G. Knepley PetscInt value = 0; 2209720e594eSMatthew G. Knepley 2210720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 22119566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, closure[cl], &value)); 2212720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2213720e594eSMatthew G. Knepley } 22149566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure)); 2215720e594eSMatthew G. Knepley if (invalidCell) { 22169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 22179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS)); 22189566063dSJacob Faibussowitsch PetscCall(DMDestroy(&subdm)); 221963a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %" PetscInt_FMT " has all of its vertices on the submesh.", dmpoints[c]); 2220720e594eSMatthew G. Knepley } 2221720e594eSMatthew G. Knepley } 22229566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &dmpoints)); 2223720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2224720e594eSMatthew G. Knepley } 2225720e594eSMatthew G. Knepley 2226c08575a3SMatthew G. Knepley /*@ 22273cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 22283cf72582SMatthew G. Knepley 22293cf72582SMatthew G. Knepley Collective on dm 22303cf72582SMatthew G. Knepley 22313cf72582SMatthew G. Knepley Input Parameters: 22323cf72582SMatthew G. Knepley + dm - The original DM 2233720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2234caf9e14dSMatthew G. Knepley . bdlabel - The optional label specifying the interface boundary vertices 2235caf9e14dSMatthew G. Knepley - bdvalue - Value of optional label specifying the interface boundary vertices 22363cf72582SMatthew G. Knepley 22373cf72582SMatthew G. Knepley Output Parameters: 22387db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 22397db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2240720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2241720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 22423cf72582SMatthew G. Knepley 22436eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 22446eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 22456eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 22466eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 22476eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 22486eccb800SMatthew Knepley 22496eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 22506eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 22516eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 22526eccb800SMatthew Knepley 22536eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 22546eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 22556eccb800SMatthew Knepley 22563cf72582SMatthew G. Knepley Level: developer 22573cf72582SMatthew G. Knepley 2258db781477SPatrick Sanan .seealso: `DMPlexConstructCohesiveCells()`, `DMPlexLabelCohesiveComplete()`, `DMPlexGetSubpointMap()`, `DMCreate()` 22593cf72582SMatthew G. Knepley @*/ 2260caf9e14dSMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, PetscInt bdvalue, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 22613cf72582SMatthew G. Knepley { 22623cf72582SMatthew G. Knepley DM idm; 22637db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 22643cf72582SMatthew G. Knepley PetscInt dim; 22653cf72582SMatthew G. Knepley 22663cf72582SMatthew G. Knepley PetscFunctionBegin; 22673cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 226892ef8ba2SVaclav Hapla if (label) PetscValidPointer(label, 2); 2269720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 227092ef8ba2SVaclav Hapla if (hybridLabel) PetscValidPointer(hybridLabel, 5); 227192ef8ba2SVaclav Hapla if (splitLabel) PetscValidPointer(splitLabel, 6); 227292ef8ba2SVaclav Hapla if (dmInterface) PetscValidPointer(dmInterface, 7); 227392ef8ba2SVaclav Hapla PetscValidPointer(dmHybrid, 8); 22749566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 22759566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm)); 22769566063dSJacob Faibussowitsch PetscCall(DMPlexCheckValidSubmesh_Private(dm, label, idm)); 22779566063dSJacob Faibussowitsch PetscCall(DMPlexOrient(idm)); 22789566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(idm, &subpointMap)); 22799566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(subpointMap, &hlabel)); 22809566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(hlabel, dim)); 22817db7e0a7SMatthew G. Knepley if (splitLabel) { 22827db7e0a7SMatthew G. Knepley const char *name; 22837db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 22847db7e0a7SMatthew G. Knepley 22859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) hlabel, &name)); 22869566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN)); 22879566063dSJacob Faibussowitsch PetscCall(PetscStrcat(sname, " split")); 22889566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, sname, &slabel)); 22897db7e0a7SMatthew G. Knepley } 2290caf9e14dSMatthew G. Knepley PetscCall(DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, bdvalue, PETSC_FALSE, idm)); 2291720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 22929566063dSJacob Faibussowitsch else PetscCall(DMDestroy(&idm)); 22939566063dSJacob Faibussowitsch PetscCall(DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid)); 22945de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *dmHybrid)); 22953cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 22969566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&hlabel)); 22977db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 22984a7ee7d0SMatthew G. Knepley { 22994a7ee7d0SMatthew G. Knepley DM cdm; 23004a7ee7d0SMatthew G. Knepley DMLabel ctLabel; 23014a7ee7d0SMatthew G. Knepley 23024a7ee7d0SMatthew G. Knepley /* We need to somehow share the celltype label with the coordinate dm */ 23039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDM(*dmHybrid, &cdm)); 23049566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellTypeLabel(*dmHybrid, &ctLabel)); 23059566063dSJacob Faibussowitsch PetscCall(DMSetLabel(cdm, ctLabel)); 23064a7ee7d0SMatthew G. Knepley } 2307cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2308cd0c2139SMatthew G Knepley } 2309cd0c2139SMatthew G Knepley 2310efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2311efa14ee0SMatthew G Knepley 2312efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2313efa14ee0SMatthew G Knepley */ 2314830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2315efa14ee0SMatthew G Knepley { 2316fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2317efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2318412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2319efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2320efa14ee0SMatthew G Knepley 2321efa14ee0SMatthew G Knepley PetscFunctionBegin; 2322efa14ee0SMatthew G Knepley *numFaces = 0; 2323efa14ee0SMatthew G Knepley *nFV = 0; 23249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 23259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 232677d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 23279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pSize, &pStart, pSize, &pEnd)); 2328efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 23299566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d])); 2330efa14ee0SMatthew G Knepley } 2331efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 23329566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2333efa14ee0SMatthew G Knepley if (subvertexIS) { 23349566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 23359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2336efa14ee0SMatthew G Knepley } 2337efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2338efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 23390298fd71SBarry Smith PetscInt *star = NULL; 2340efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2341efa14ee0SMatthew G Knepley 23429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2343efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2344efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2345efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2346efa14ee0SMatthew G Knepley } 2347efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2348efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 23490298fd71SBarry Smith PetscInt *closure = NULL; 2350efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2351efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2352efa14ee0SMatthew G Knepley 23539566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cell, &cellLoc)); 235465560c7fSMatthew G Knepley if (cellLoc == 2) continue; 235563a3b9bcSJacob Faibussowitsch PetscCheck(cellLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", cell, cellLoc); 23569566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2357efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2358efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2359efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2360efa14ee0SMatthew G Knepley 2361efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2362efa14ee0SMatthew G Knepley ++numCorners; 23639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2364830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2365efa14ee0SMatthew G Knepley } 2366efa14ee0SMatthew G Knepley } 23679566063dSJacob Faibussowitsch if (!(*nFV)) PetscCall(DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV)); 236863a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= *nFV,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 2369efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2370007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2371007baee2SMatthew G. Knepley PetscInt numCells, nc; 2372007baee2SMatthew G. Knepley 2373efa14ee0SMatthew G Knepley ++(*numFaces); 2374efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 23759566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[cl], 0)); 2376efa14ee0SMatthew G Knepley } 23779566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells)); 2378007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 23799566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[nc], 2)); 2380007baee2SMatthew G. Knepley } 23819566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells)); 2382efa14ee0SMatthew G Knepley } 23839566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 2384efa14ee0SMatthew G Knepley } 23859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2386efa14ee0SMatthew G Knepley } 2387efa14ee0SMatthew G Knepley if (subvertexIS) { 23889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 2389efa14ee0SMatthew G Knepley } 23909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 23919566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2392efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2393efa14ee0SMatthew G Knepley } 2394efa14ee0SMatthew G Knepley 2395158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2396efa14ee0SMatthew G Knepley { 239734b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2398efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2399412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2400efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2401efa14ee0SMatthew G Knepley 2402efa14ee0SMatthew G Knepley PetscFunctionBegin; 24039566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1, &pStart, dim+1, &pEnd)); 2405efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 24069566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d])); 2407efa14ee0SMatthew G Knepley } 2408efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 240934b4c39eSMatthew G. Knepley if (vertexLabel) { 24109566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(vertexLabel, value, &subvertexIS)); 2411efa14ee0SMatthew G Knepley if (subvertexIS) { 24129566063dSJacob Faibussowitsch PetscCall(ISGetSize(subvertexIS, &numSubVerticesInitial)); 24139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subvertexIS, &subvertices)); 2414efa14ee0SMatthew G Knepley } 241534b4c39eSMatthew G. Knepley } 2416efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2417efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 24180298fd71SBarry Smith PetscInt *star = NULL; 2419efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2420efa14ee0SMatthew G Knepley 24219566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2422efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2423efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2424158acfadSMatthew G. Knepley PetscInt faceLoc; 2425158acfadSMatthew G. Knepley 2426158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2427158acfadSMatthew G. Knepley if (markedFaces) { 24289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &faceLoc)); 2429158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2430158acfadSMatthew G. Knepley } 2431158acfadSMatthew G. Knepley star[numFaces++] = point; 2432158acfadSMatthew G. Knepley } 2433efa14ee0SMatthew G Knepley } 2434efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2435efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 24360298fd71SBarry Smith PetscInt *closure = NULL; 2437efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2438efa14ee0SMatthew G Knepley PetscInt faceLoc; 2439efa14ee0SMatthew G Knepley 24409566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, face, &faceLoc)); 2441efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 244263a3b9bcSJacob Faibussowitsch PetscCheck(faceLoc < 0,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %" PetscInt_FMT " has dimension %" PetscInt_FMT " in the surface label", face, faceLoc); 24439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2444efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2445efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2446efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2447efa14ee0SMatthew G Knepley 2448efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 24499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(vertexLabel, point, &vertexLoc)); 2450830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2451efa14ee0SMatthew G Knepley } 2452efa14ee0SMatthew G Knepley } 2453efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2454efa14ee0SMatthew G Knepley const PetscInt *support; 2455efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2456efa14ee0SMatthew G Knepley 2457efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2458efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2459efa14ee0SMatthew G Knepley 2460efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2461efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 24629566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2463efa14ee0SMatthew G Knepley break; 2464efa14ee0SMatthew G Knepley } 2465efa14ee0SMatthew G Knepley } 2466efa14ee0SMatthew G Knepley } 24679566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, face, &supportSize)); 24689566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, face, &support)); 2469efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 24709566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2471efa14ee0SMatthew G Knepley } 2472efa14ee0SMatthew G Knepley } 24739566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure)); 2474efa14ee0SMatthew G Knepley } 24759566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star)); 2476efa14ee0SMatthew G Knepley } 24779566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subvertices)); 24789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 24799566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2480efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2481efa14ee0SMatthew G Knepley } 2482efa14ee0SMatthew G Knepley 248327c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2484766ab985SMatthew G. Knepley { 248527c04023SMatthew G. Knepley DMLabel label = NULL; 2486766ab985SMatthew G. Knepley const PetscInt *cone; 24879fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2488766ab985SMatthew G. Knepley 2489812bfc34SJed Brown PetscFunctionBegin; 2490c0ed958bSJed Brown *numFaces = 0; 2491c0ed958bSJed Brown *nFV = 0; 24929566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 2493fed694aaSMatthew G. Knepley *subCells = NULL; 24949566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 24959566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2496766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 249727c04023SMatthew G. Knepley if (label) { 249827c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 249927c04023SMatthew G. Knepley PetscInt val; 250027c04023SMatthew G. Knepley 25019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 250227c04023SMatthew G. Knepley if (val == value) { 250327c04023SMatthew G. Knepley ++(*numFaces); 25049566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 250527c04023SMatthew G. Knepley } 250627c04023SMatthew G. Knepley } 250727c04023SMatthew G. Knepley } else { 2508766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 25099566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cMax, &coneSize)); 251027c04023SMatthew G. Knepley } 25119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*numFaces *2, subCells)); 25129fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 25139fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2514766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2515766ab985SMatthew G. Knepley const PetscInt *cells; 2516766ab985SMatthew G. Knepley PetscInt numCells; 2517766ab985SMatthew G. Knepley 251827c04023SMatthew G. Knepley if (label) { 251927c04023SMatthew G. Knepley PetscInt val; 252027c04023SMatthew G. Knepley 25219566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 252227c04023SMatthew G. Knepley if (val != value) continue; 252327c04023SMatthew G. Knepley } 25249566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 2525766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 25269566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cone[p], 0)); 2527766ab985SMatthew G. Knepley } 2528766ab985SMatthew G. Knepley /* Negative face */ 25299566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells)); 253027234c99SMatthew G. Knepley /* Not true in parallel 253108401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2532766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 25339566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, cells[p], 2)); 253427234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2535766ab985SMatthew G. Knepley } 25369566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells)); 2537766ab985SMatthew G. Knepley /* Positive face is not included */ 2538766ab985SMatthew G. Knepley } 2539766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2540766ab985SMatthew G. Knepley } 2541766ab985SMatthew G. Knepley 25423982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2543766ab985SMatthew G. Knepley { 2544766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2545766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2546766ab985SMatthew G. Knepley 2547812bfc34SJed Brown PetscFunctionBegin; 25489566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 25499566063dSJacob Faibussowitsch PetscCall(DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd)); 2550766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 25519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(dim+1,&pStart,dim+1,&pEnd)); 25529566063dSJacob Faibussowitsch for (d = 0; d <= dim; ++d) PetscCall(DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d])); 2553766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2554766ab985SMatthew G. Knepley const PetscInt *cone; 2555766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2556b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2557766ab985SMatthew G. Knepley 255827c04023SMatthew G. Knepley if (label) { 25599566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, c, &val)); 256027c04023SMatthew G. Knepley if (val != value) continue; 256127c04023SMatthew G. Knepley } 25629566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, c, &coneSize)); 25639566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, c, &cone)); 25649566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cone[0], &fconeSize)); 25651dca8a05SBarry Smith PetscCheck(coneSize == (fconeSize ? fconeSize : 1) + 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2566b3154360SMatthew G. Knepley /* Negative face */ 25679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2568766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2569766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2570766ab985SMatthew G. Knepley 2571766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2572766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 25739566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, point, d)); 2574766ab985SMatthew G. Knepley break; 2575766ab985SMatthew G. Knepley } 2576766ab985SMatthew G. Knepley } 2577766ab985SMatthew G. Knepley } 25789566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure)); 2579766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2580766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2581766ab985SMatthew G. Knepley const PetscInt *support; 2582766ab985SMatthew G. Knepley PetscInt supportSize, s; 2583766ab985SMatthew G. Knepley 25849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, cone[cl], &supportSize)); 258508401ef6SPierre Jolivet /* PetscCheck(supportSize == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 25869566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, cone[cl], &support)); 2587766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 25889566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, support[s], dim)); 2589766ab985SMatthew G. Knepley } 2590766ab985SMatthew G. Knepley } 2591766ab985SMatthew G. Knepley } 25929566063dSJacob Faibussowitsch PetscCall(PetscFree2(pStart, pEnd)); 2593766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2594766ab985SMatthew G. Knepley } 2595766ab985SMatthew G. Knepley 2596c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2597e6ccafaeSMatthew G Knepley { 259882f516ccSBarry Smith MPI_Comm comm; 2599e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2600e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2601e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2602e6ccafaeSMatthew G Knepley 260382f516ccSBarry Smith PetscFunctionBegin; 26049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 26059566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &cellDim)); 260663a3b9bcSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, "cellDim: %" PetscInt_FMT " numCorners: %" PetscInt_FMT "\n", cellDim, numCorners)); 2607e6ccafaeSMatthew G Knepley 2608ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2609ddeab2a6SMatthew G. Knepley /* Triangle */ 2610e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2611e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2612ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2613ddeab2a6SMatthew G. Knepley /* Triangle */ 2614ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2615ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2616ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2617ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2618ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2619ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2620e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2621e6ccafaeSMatthew G Knepley /* Quadratic line */ 2622e6ccafaeSMatthew G Knepley faceSize = 1; 2623e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2624e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2625e6ccafaeSMatthew G Knepley /* Quads */ 2626e6ccafaeSMatthew G Knepley faceSize = 2; 2627e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2628e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2629e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2630e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2631e6ccafaeSMatthew G Knepley } else { 2632e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2633e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2634e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2635e6ccafaeSMatthew G Knepley } 2636e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2637e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2638e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2639e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2640e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2641e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2642e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2643e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2644e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2645e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2646e6ccafaeSMatthew G Knepley }; 2647e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2648e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2649e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2650e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2651e6ccafaeSMatthew G Knepley }; 2652e6ccafaeSMatthew G Knepley 2653e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 26549566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTri, sortedIndices)); 2655e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2656e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2657e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2658e6ccafaeSMatthew G Knepley 2659e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2660e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2661e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2662e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2663e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2664e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2665e6ccafaeSMatthew G Knepley break; 2666e6ccafaeSMatthew G Knepley } 2667e6ccafaeSMatthew G Knepley } 2668e6ccafaeSMatthew G Knepley } 2669e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2670e6ccafaeSMatthew G Knepley break; 2671e6ccafaeSMatthew G Knepley } 2672e6ccafaeSMatthew G Knepley } 267328b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2674e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2675e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2676e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2677e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2678e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2679e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2680e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2681e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2682e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2683e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2684e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2685e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2686e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2687e6ccafaeSMatthew G Knepley }; 2688e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2689e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2690e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2691e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2692e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2693e6ccafaeSMatthew G Knepley }; 2694e6ccafaeSMatthew G Knepley 2695e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 26969566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuad, sortedIndices)); 2697e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2698e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2699e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2700e6ccafaeSMatthew G Knepley 2701e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2702e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2703e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2704e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2705e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2706e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2707e6ccafaeSMatthew G Knepley break; 2708e6ccafaeSMatthew G Knepley } 2709e6ccafaeSMatthew G Knepley } 2710e6ccafaeSMatthew G Knepley } 2711e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2712e6ccafaeSMatthew G Knepley break; 2713e6ccafaeSMatthew G Knepley } 2714e6ccafaeSMatthew G Knepley } 271528b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2716e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2717e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2718e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2719e6ccafaeSMatthew G Knepley /* Hexes 2720e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2721e6ccafaeSMatthew G Knepley pointing up at the second. 2722e6ccafaeSMatthew G Knepley 2723e6ccafaeSMatthew G Knepley 7---6 2724e6ccafaeSMatthew G Knepley /| /| 2725e6ccafaeSMatthew G Knepley 4---5 | 2726ddeab2a6SMatthew G. Knepley | 1-|-2 2727e6ccafaeSMatthew G Knepley |/ |/ 2728ddeab2a6SMatthew G. Knepley 0---3 2729e6ccafaeSMatthew G Knepley 2730e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2731e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2732e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2733e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2734e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2735e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2736e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2737ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2738ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2739ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2740ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2741e6ccafaeSMatthew G Knepley }; 2742e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2743ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2744e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2745ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2746ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2747ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2748ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2749e6ccafaeSMatthew G Knepley }; 2750e6ccafaeSMatthew G Knepley 2751e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 27529566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeHex, sortedIndices)); 2753e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2754e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2755e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2756e6ccafaeSMatthew G Knepley 2757e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2758e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2759e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2760e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2761e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2762e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2763e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2764e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2765e6ccafaeSMatthew G Knepley break; 2766e6ccafaeSMatthew G Knepley } 2767e6ccafaeSMatthew G Knepley } 2768e6ccafaeSMatthew G Knepley } 2769e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2770e6ccafaeSMatthew G Knepley break; 2771e6ccafaeSMatthew G Knepley } 2772e6ccafaeSMatthew G Knepley } 277328b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2774e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2775e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2776e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2777e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2778e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2779e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2780e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2781e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2782e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2783e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2784e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2785e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2786e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2787e6ccafaeSMatthew G Knepley }; 2788e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2789e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2790e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2791e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2792e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2793e6ccafaeSMatthew G Knepley }; 2794e6ccafaeSMatthew G Knepley 2795e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 27969566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeTet, sortedIndices)); 2797e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2798e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2799e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2800e6ccafaeSMatthew G Knepley 2801e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2802e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2803e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2804e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2805e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2806e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2807e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2808e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2809e6ccafaeSMatthew G Knepley break; 2810e6ccafaeSMatthew G Knepley } 2811e6ccafaeSMatthew G Knepley } 2812e6ccafaeSMatthew G Knepley } 2813e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2814e6ccafaeSMatthew G Knepley break; 2815e6ccafaeSMatthew G Knepley } 2816e6ccafaeSMatthew G Knepley } 281728b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2818e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2819e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2820e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2821e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2822e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2823e6ccafaeSMatthew G Knepley pointing up at the second. 2824e6ccafaeSMatthew G Knepley 2825e6ccafaeSMatthew G Knepley 7---6 2826e6ccafaeSMatthew G Knepley /| /| 2827e6ccafaeSMatthew G Knepley 4---5 | 2828e6ccafaeSMatthew G Knepley | 3-|-2 2829e6ccafaeSMatthew G Knepley |/ |/ 2830e6ccafaeSMatthew G Knepley 0---1 2831e6ccafaeSMatthew G Knepley 2832e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2833e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2834e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2835e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2836e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2837e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2838e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2839e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2840e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2841e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2842e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2843e6ccafaeSMatthew G Knepley }; 2844e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2845e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2846e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2847e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2848e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2849e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2850e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2851e6ccafaeSMatthew G Knepley }; 2852e6ccafaeSMatthew G Knepley 2853e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 28549566063dSJacob Faibussowitsch PetscCall(PetscSortInt(faceSizeQuadHex, sortedIndices)); 2855e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2856e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2857e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2858e6ccafaeSMatthew G Knepley 2859e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2860e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2861e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2862e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2863e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2864e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2865e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2866e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2867e6ccafaeSMatthew G Knepley break; 2868e6ccafaeSMatthew G Knepley } 2869e6ccafaeSMatthew G Knepley } 2870e6ccafaeSMatthew G Knepley } 2871e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2872e6ccafaeSMatthew G Knepley break; 2873e6ccafaeSMatthew G Knepley } 2874e6ccafaeSMatthew G Knepley } 287528b400f6SJacob Faibussowitsch PetscCheck(found,comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2876e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2877e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2878e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2879e6ccafaeSMatthew G Knepley if (!posOrient) { 28809566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Reversing initial face orientation\n")); 2881e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2882e6ccafaeSMatthew G Knepley } else { 28839566063dSJacob Faibussowitsch if (debug) PetscCall(PetscPrintf(comm, " Keeping initial face orientation\n")); 2884e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2885e6ccafaeSMatthew G Knepley } 2886e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2887e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2888e6ccafaeSMatthew G Knepley } 2889e6ccafaeSMatthew G Knepley 2890c08575a3SMatthew G. Knepley /*@ 2891c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2892c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2893c08575a3SMatthew G. Knepley 2894c08575a3SMatthew G. Knepley Not collective 2895c08575a3SMatthew G. Knepley 2896c08575a3SMatthew G. Knepley Input Parameters: 2897c08575a3SMatthew G. Knepley + dm - The original mesh 2898c08575a3SMatthew G. Knepley . cell - The cell mesh point 2899c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2900c08575a3SMatthew G. Knepley . face - The face vertices 2901c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2902c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2903c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2904c08575a3SMatthew G. Knepley 2905d8d19677SJose E. Roman Output Parameters: 2906c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2907c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2908c08575a3SMatthew G. Knepley 2909c08575a3SMatthew G. Knepley Level: developer 2910c08575a3SMatthew G. Knepley 2911db781477SPatrick Sanan .seealso: `DMPlexGetCone()` 2912c08575a3SMatthew G. Knepley @*/ 2913e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2914e6ccafaeSMatthew G Knepley { 29150298fd71SBarry Smith const PetscInt *cone = NULL; 2916e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2917e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2918e6ccafaeSMatthew G Knepley 2919e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29209566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, cell, &coneSize)); 29219566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 2922e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2923e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2924e6ccafaeSMatthew G Knepley 2925e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2926e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2927e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2928e6ccafaeSMatthew G Knepley } 2929e6ccafaeSMatthew G Knepley } 2930e6ccafaeSMatthew G Knepley if (found) { 2931e6ccafaeSMatthew G Knepley indices[v2] = v; 2932e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2933e6ccafaeSMatthew G Knepley ++v2; 2934e6ccafaeSMatthew G Knepley } else { 2935e6ccafaeSMatthew G Knepley oppositeVertex = v; 2936e6ccafaeSMatthew G Knepley } 2937e6ccafaeSMatthew G Knepley } 29389566063dSJacob Faibussowitsch PetscCall(DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented)); 2939e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2940e6ccafaeSMatthew G Knepley } 2941e6ccafaeSMatthew G Knepley 2942e6ccafaeSMatthew G Knepley /* 2943cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2944e6ccafaeSMatthew G Knepley 2945e6ccafaeSMatthew G Knepley Not collective 2946e6ccafaeSMatthew G Knepley 2947e6ccafaeSMatthew G Knepley Input Parameters: 2948e6ccafaeSMatthew G Knepley + dm - The DMPlex 2949e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2950e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2951e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2952e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2953e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2954e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2955e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2956e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2957e6ccafaeSMatthew G Knepley 2958e6ccafaeSMatthew G Knepley Output Parameters: 2959e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2960e6ccafaeSMatthew G Knepley 2961e6ccafaeSMatthew G Knepley Level: developer 2962e6ccafaeSMatthew G Knepley */ 2963cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2964e6ccafaeSMatthew G Knepley { 296582f516ccSBarry Smith MPI_Comm comm; 2966e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2967e6ccafaeSMatthew G Knepley const PetscInt *faces; 2968e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2969e6ccafaeSMatthew G Knepley 2970e6ccafaeSMatthew G Knepley PetscFunctionBegin; 29719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 29729566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subcell, &coneSize)); 297363a3b9bcSJacob Faibussowitsch PetscCheck(coneSize == 1,comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %" PetscInt_FMT " is %" PetscInt_FMT " != 1", cell, coneSize); 2974e6ccafaeSMatthew G Knepley #if 0 2975e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 29769566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 2977e6ccafaeSMatthew G Knepley #else 2978e6ccafaeSMatthew G Knepley { 2979e6ccafaeSMatthew G Knepley PetscInt f; 2980e6ccafaeSMatthew G Knepley 2981e6ccafaeSMatthew G Knepley numFaces = 0; 29829566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 2983e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2984e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2985e6ccafaeSMatthew G Knepley 29869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(submesh->coneSection, f, &dof)); 29879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(submesh->coneSection, f, &off)); 2988e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2989e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2990e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2991e6ccafaeSMatthew G Knepley PetscInt v; 2992e6ccafaeSMatthew G Knepley 2993e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2994e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2995e6ccafaeSMatthew G Knepley } 2996e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2997e6ccafaeSMatthew G Knepley } 2998e6ccafaeSMatthew G Knepley if (d == dof) { 2999e6ccafaeSMatthew G Knepley numFaces = 1; 3000e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 3001e6ccafaeSMatthew G Knepley } 3002e6ccafaeSMatthew G Knepley } 3003e6ccafaeSMatthew G Knepley } 3004e6ccafaeSMatthew G Knepley #endif 300563a3b9bcSJacob Faibussowitsch PetscCheck(numFaces <= 1,comm, PETSC_ERR_ARG_WRONG, "Vertex set had %" PetscInt_FMT " faces, not one", numFaces); 3006*f7d195e4SLawrence Mitchell if (numFaces == 1) { 3007e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 30089566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, faces)); 3009e6ccafaeSMatthew G Knepley } else { 3010e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 3011e6ccafaeSMatthew G Knepley PetscBool posOriented; 3012e6ccafaeSMatthew G Knepley 30139566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3014e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 3015e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 3016e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 30179566063dSJacob Faibussowitsch PetscCall(DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented)); 3018e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 3019e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 3020e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 3021e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 3022e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 3023e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 3024e6ccafaeSMatthew G Knepley break; 3025e6ccafaeSMatthew G Knepley } 3026e6ccafaeSMatthew G Knepley } 302763a3b9bcSJacob Faibussowitsch PetscCheck(ov != numFaceVertices,comm, PETSC_ERR_PLIB, "Could not find face vertex %" PetscInt_FMT " in orientated set", vertex); 3028e6ccafaeSMatthew G Knepley } 30299566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices)); 30309566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, newFacePoint)); 30319566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices)); 3032e6ccafaeSMatthew G Knepley ++(*newFacePoint); 3033e6ccafaeSMatthew G Knepley } 3034ef07cca7SMatthew G. Knepley #if 0 30359566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces)); 3036ef07cca7SMatthew G. Knepley #else 30379566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces)); 3038ef07cca7SMatthew G. Knepley #endif 3039e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3040e6ccafaeSMatthew G Knepley } 3041e6ccafaeSMatthew G Knepley 304253156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 3043e6ccafaeSMatthew G Knepley { 304482f516ccSBarry Smith MPI_Comm comm; 304553156dfcSMatthew G. Knepley DMLabel subpointMap; 3046efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 3047efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 3048efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 3049fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 3050efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 3051e6ccafaeSMatthew G Knepley 3052e6ccafaeSMatthew G Knepley PetscFunctionBegin; 30539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 3054efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 30559566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 30569566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 30579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 30589566063dSJacob Faibussowitsch if (vertexLabel) PetscCall(DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm)); 3059efa14ee0SMatthew G Knepley /* Setup chart */ 30609566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 30619566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 30629566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 30639566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3064e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3065e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 3066efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 3067e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 30689566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 30699566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 30709566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 2, &subcellIS)); 30719566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISGetIndices(subcellIS, &subCells)); 3072e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 30739566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3074e6ccafaeSMatthew G Knepley } 3075e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 30769566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3077e6ccafaeSMatthew G Knepley } 30789566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3079e6ccafaeSMatthew G Knepley /* Create face cones */ 30809566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 30819566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 30829566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3083e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 3084e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 3085efa14ee0SMatthew G Knepley const PetscInt subcell = c; 30860298fd71SBarry Smith PetscInt *closure = NULL; 3087efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 3088e6ccafaeSMatthew G Knepley 30899566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3090efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 3091efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 3092e6ccafaeSMatthew G Knepley PetscInt subVertex; 3093e6ccafaeSMatthew G Knepley 3094efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 3095efa14ee0SMatthew G Knepley ++numCorners; 30969566063dSJacob Faibussowitsch PetscCall(PetscFindInt(point, numSubVertices, subVertices, &subVertex)); 3097efa14ee0SMatthew G Knepley if (subVertex >= 0) { 3098efa14ee0SMatthew G Knepley closure[faceSize] = point; 309965560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 3100e6ccafaeSMatthew G Knepley ++faceSize; 3101e6ccafaeSMatthew G Knepley } 3102e6ccafaeSMatthew G Knepley } 3103e6ccafaeSMatthew G Knepley } 310463a3b9bcSJacob Faibussowitsch PetscCheck(faceSize <= nFV,comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %" PetscInt_FMT " of an element on the surface", faceSize); 3105efa14ee0SMatthew G Knepley if (faceSize == nFV) { 31069566063dSJacob Faibussowitsch PetscCall(DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint)); 3107e6ccafaeSMatthew G Knepley } 31089566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 3109e6ccafaeSMatthew G Knepley } 31109566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 31119566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 31129566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3113e6ccafaeSMatthew G Knepley /* Build coordinates */ 3114efa14ee0SMatthew G Knepley { 3115efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 3116efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 3117efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 3118285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 311924640c55SToby Isaac const char *name; 3120efa14ee0SMatthew G Knepley 31219566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 31229566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 31239566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 31249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 31259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 31269566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 31279566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3128efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3129efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3130efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3131efa14ee0SMatthew G Knepley PetscInt dof; 3132efa14ee0SMatthew G Knepley 31339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31349566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 31359566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3136e6ccafaeSMatthew G Knepley } 31379566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 31389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 31399566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 31409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 31419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 31429566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 31439566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 3144830e53efSMatthew G. Knepley if (coordSize) { 31459566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 31469566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3147efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 3148efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 3149efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 3150efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3151e6ccafaeSMatthew G Knepley 31529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 31539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 31549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 31559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 315663a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3157e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3158e6ccafaeSMatthew G Knepley } 31599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 31609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 31613b399e24SMatthew G. Knepley } 31629566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 31639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3164e6ccafaeSMatthew G Knepley } 3165efa14ee0SMatthew G Knepley /* Cleanup */ 31669566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 31679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 31689566063dSJacob Faibussowitsch if (subcellIS) PetscCall(ISRestoreIndices(subcellIS, &subCells)); 31699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subcellIS)); 3170e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3171e6ccafaeSMatthew G Knepley } 3172e6ccafaeSMatthew G Knepley 3173d0609cedSBarry Smith /* TODO: Fix this to properly propogate up error conditions it may find */ 31749fbee547SJacob Faibussowitsch static inline PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 31753982b651SMatthew G. Knepley { 31763982b651SMatthew G. Knepley PetscInt subPoint; 31773982b651SMatthew G. Knepley PetscErrorCode ierr; 31783982b651SMatthew G. Knepley 3179d0609cedSBarry Smith ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr) return -1; 31803982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 31813982b651SMatthew G. Knepley } 31823982b651SMatthew G. Knepley 3183212103e5SMatthew Knepley static PetscErrorCode DMPlexFilterLabels_Internal(DM dm, const PetscInt numSubPoints[], const PetscInt *subpoints[], const PetscInt firstSubPoint[], DM subdm) 3184212103e5SMatthew Knepley { 3185212103e5SMatthew Knepley PetscInt Nl, l, d; 3186212103e5SMatthew Knepley 3187212103e5SMatthew Knepley PetscFunctionBegin; 31889566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 3189212103e5SMatthew Knepley for (l = 0; l < Nl; ++l) { 3190212103e5SMatthew Knepley DMLabel label, newlabel; 3191212103e5SMatthew Knepley const char *lname; 3192d56405f8SMatthew G. Knepley PetscBool isDepth, isDim, isCelltype, isVTK; 3193212103e5SMatthew Knepley IS valueIS; 3194212103e5SMatthew Knepley const PetscInt *values; 3195212103e5SMatthew Knepley PetscInt Nv, v; 3196212103e5SMatthew Knepley 31979566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &lname)); 31989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &isDepth)); 31999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "dim", &isDim)); 32009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &isCelltype)); 32019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "vtk", &isVTK)); 3202d56405f8SMatthew G. Knepley if (isDepth || isDim || isCelltype || isVTK) continue; 32039566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, lname)); 32049566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, lname, &label)); 32059566063dSJacob Faibussowitsch PetscCall(DMGetLabel(subdm, lname, &newlabel)); 32069566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &v)); 32079566063dSJacob Faibussowitsch PetscCall(DMLabelSetDefaultValue(newlabel, v)); 32089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 32099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(valueIS, &Nv)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &values)); 3211212103e5SMatthew Knepley for (v = 0; v < Nv; ++v) { 3212212103e5SMatthew Knepley IS pointIS; 3213212103e5SMatthew Knepley const PetscInt *points; 3214212103e5SMatthew Knepley PetscInt Np, p; 3215212103e5SMatthew Knepley 32169566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, values[v], &pointIS)); 32179566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &Np)); 32189566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 3219212103e5SMatthew Knepley for (p = 0; p < Np; ++p) { 3220212103e5SMatthew Knepley const PetscInt point = points[p]; 3221212103e5SMatthew Knepley PetscInt subp; 3222212103e5SMatthew Knepley 32239566063dSJacob Faibussowitsch PetscCall(DMPlexGetPointDepth(dm, point, &d)); 3224212103e5SMatthew Knepley subp = DMPlexFilterPoint_Internal(point, firstSubPoint[d], numSubPoints[d], subpoints[d]); 32259566063dSJacob Faibussowitsch if (subp >= 0) PetscCall(DMLabelSetValue(newlabel, subp, values[v])); 3226212103e5SMatthew Knepley } 32279566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointIS, &points)); 32289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3229212103e5SMatthew Knepley } 32309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &values)); 32319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 3232212103e5SMatthew Knepley } 3233212103e5SMatthew Knepley PetscFunctionReturn(0); 3234212103e5SMatthew Knepley } 3235212103e5SMatthew Knepley 3236158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3237e6ccafaeSMatthew G Knepley { 323882f516ccSBarry Smith MPI_Comm comm; 323953156dfcSMatthew G. Knepley DMLabel subpointMap; 3240efa14ee0SMatthew G Knepley IS *subpointIS; 3241efa14ee0SMatthew G Knepley const PetscInt **subpoints; 32423982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3243412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 32440d366550SMatthew G. Knepley PetscMPIInt rank; 3245e6ccafaeSMatthew G Knepley 3246e6ccafaeSMatthew G Knepley PetscFunctionBegin; 32479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 32489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3249efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 32509566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 32519566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 3252bec263e5SMatthew G. Knepley if (cellHeight) { 32539566063dSJacob Faibussowitsch if (isCohesive) PetscCall(DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm)); 32549566063dSJacob Faibussowitsch else PetscCall(DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm)); 3255bec263e5SMatthew G. Knepley } else { 3256bec263e5SMatthew G. Knepley DMLabel depth; 3257bec263e5SMatthew G. Knepley IS pointIS; 3258bec263e5SMatthew G. Knepley const PetscInt *points; 3259b85c8bf9SMatthew G. Knepley PetscInt numPoints=0; 3260bec263e5SMatthew G. Knepley 32619566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &depth)); 32629566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &pointIS)); 3263b85c8bf9SMatthew G. Knepley if (pointIS) { 32649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointIS, &points)); 32659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointIS, &numPoints)); 3266b85c8bf9SMatthew G. Knepley } 3267bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3268bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3269bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3270bec263e5SMatthew G. Knepley 32719566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3272bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 32739566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(depth, closure[c], &pdim)); 32749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(subpointMap, closure[c], pdim)); 3275bec263e5SMatthew G. Knepley } 32769566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure)); 3277bec263e5SMatthew G. Knepley } 32789566063dSJacob Faibussowitsch if (pointIS) PetscCall(ISRestoreIndices(pointIS, &points)); 32799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 3280bec263e5SMatthew G. Knepley } 3281efa14ee0SMatthew G Knepley /* Setup chart */ 32829566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 32839566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints)); 3284e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d])); 3286e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3287e6ccafaeSMatthew G Knepley } 32889566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, totSubPoints)); 32899566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, cellHeight)); 3290e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3291e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3292e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3293e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3294e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3295e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 32969566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, d, &subpointIS[d])); 32979566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISGetIndices(subpointIS[d], &subpoints[d])); 3298e6ccafaeSMatthew G Knepley } 3299412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 33009566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(subdm, "celltype")); 3301e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3302e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3303e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3304e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3305e6ccafaeSMatthew G Knepley const PetscInt *cone; 330615100a53SVaclav Hapla PetscInt coneSize; 3307e6ccafaeSMatthew G Knepley 33089566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 3309bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 331015100a53SVaclav Hapla PetscInt coneSizeNew, c, val; 331115100a53SVaclav Hapla 33129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 3313e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33149566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(subpointMap, cone[c], &val)); 3315e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3316e6ccafaeSMatthew G Knepley } 33179566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSizeNew)); 33189566063dSJacob Faibussowitsch PetscCall(DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST)); 331915100a53SVaclav Hapla } else { 332015100a53SVaclav Hapla DMPolytopeType ct; 332115100a53SVaclav Hapla 332215100a53SVaclav Hapla PetscCall(DMPlexSetConeSize(subdm, subpoint, coneSize)); 332315100a53SVaclav Hapla PetscCall(DMPlexGetCellType(dm, point, &ct)); 332415100a53SVaclav Hapla PetscCall(DMPlexSetCellType(subdm, subpoint, ct)); 3325e6ccafaeSMatthew G Knepley } 3326e6ccafaeSMatthew G Knepley } 3327e6ccafaeSMatthew G Knepley } 33289566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 33299566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3330e6ccafaeSMatthew G Knepley /* Set cones */ 33319566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 33329566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew)); 3333e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3334e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3335e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3336e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 33370e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 33380d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3339e6ccafaeSMatthew G Knepley 33400d366550SMatthew G. Knepley if (d == dim-1) { 33410d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 33420d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 33430d366550SMatthew G. Knepley 33449566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 33459566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 33460d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3347412e9a14SMatthew G. Knepley PetscBool isHybrid; 3348412e9a14SMatthew G. Knepley 33499566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid)); 3350412e9a14SMatthew G. Knepley if (!isHybrid) continue; 33519566063dSJacob Faibussowitsch PetscCall(PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc)); 33520d366550SMatthew G. Knepley if (subc >= 0) { 33530d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 33540d366550SMatthew G. Knepley 33559566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, ccell, &cone)); 33569566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, ccell, &coneSize)); 33579566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, ccell, &ornt)); 33580d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 33590d366550SMatthew G. Knepley if (cone[c] == point) { 33600d366550SMatthew G. Knepley fornt = ornt[c]; 33610d366550SMatthew G. Knepley break; 33620d366550SMatthew G. Knepley } 33630d366550SMatthew G. Knepley } 33640d366550SMatthew G. Knepley break; 33650d366550SMatthew G. Knepley } 33660d366550SMatthew G. Knepley } 33670d366550SMatthew G. Knepley } 33689566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, point, &coneSize)); 33699566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(subdm, subpoint, &subconeSize)); 33709566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, point, &cone)); 33719566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeOrientation(dm, point, &ornt)); 3372e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 33739566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc)); 337401a2673eSMatthew G. Knepley if (subc >= 0) { 337501a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 33763982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 337701a2673eSMatthew G. Knepley ++coneSizeNew; 337801a2673eSMatthew G. Knepley } 3379e6ccafaeSMatthew G Knepley } 338063a3b9bcSJacob Faibussowitsch PetscCheck(coneSizeNew == subconeSize,comm, PETSC_ERR_PLIB, "Number of cone points located %" PetscInt_FMT " does not match subcone size %" PetscInt_FMT, coneSizeNew, subconeSize); 33819566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subpoint, coneNew)); 33829566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeOrientation(subdm, subpoint, orntNew)); 33839566063dSJacob Faibussowitsch if (fornt < 0) PetscCall(DMPlexOrientPoint(subdm, subpoint, fornt)); 3384e6ccafaeSMatthew G Knepley } 3385e6ccafaeSMatthew G Knepley } 33869566063dSJacob Faibussowitsch PetscCall(PetscFree2(coneNew,orntNew)); 33879566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 33889566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3389e6ccafaeSMatthew G Knepley /* Build coordinates */ 3390e6ccafaeSMatthew G Knepley { 3391e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3392e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3393e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3394c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 339524640c55SToby Isaac const char *name; 3396e6ccafaeSMatthew G Knepley 33979566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 33989566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 33999566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 34009566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 34019566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 34029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 34039566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 34049566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0])); 3405e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3406e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3407e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3408e6ccafaeSMatthew G Knepley PetscInt dof; 3409e6ccafaeSMatthew G Knepley 34109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 34129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3413e6ccafaeSMatthew G Knepley } 34149566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 34159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 34169566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 34189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 34199566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 34209566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 34219566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 34229566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 34239566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3424e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3425e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3426e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3427e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3428e6ccafaeSMatthew G Knepley 34299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 34309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 34319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 34329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 343363a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3434efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3435e6ccafaeSMatthew G Knepley } 34369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 34379566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 34389566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 34399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3440e6ccafaeSMatthew G Knepley } 34413982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 34423982b651SMatthew G. Knepley { 34433982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 34443982b651SMatthew G. Knepley IS subpIS; 34453982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 34463982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 34473982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 34483982b651SMatthew G. Knepley PetscInt *slocalPoints; 34493982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 34503982b651SMatthew G. Knepley PetscMPIInt rank; 34513982b651SMatthew G. Knepley 34529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 34539566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 34549566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 34559566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 34569566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(subdm, NULL, &numSubroots)); 34579566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(subdm, &subpIS)); 34583982b651SMatthew G. Knepley if (subpIS) { 34599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpIS, &subpoints)); 34609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpIS, &numSubpoints)); 34613982b651SMatthew G. Knepley } 34629566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 34633982b651SMatthew G. Knepley if (numRoots >= 0) { 34649566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 34653982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 34663982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 34673982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 34683982b651SMatthew G. Knepley } 34693982b651SMatthew G. Knepley /* Set subleaves */ 34703982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 34713982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34723982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 34733982b651SMatthew G. Knepley 34743982b651SMatthew G. Knepley if (subpoint < 0) continue; 34753982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 34763982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 34773982b651SMatthew G. Knepley ++numSubleaves; 34783982b651SMatthew G. Knepley } 34793982b651SMatthew G. Knepley /* Must put in owned subpoints */ 34803982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 34813982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 34823982b651SMatthew G. Knepley 34833982b651SMatthew G. Knepley if (subpoint < 0) { 34843982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 34853982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 34863982b651SMatthew G. Knepley } else { 34873982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 34883982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 34893982b651SMatthew G. Knepley } 34903982b651SMatthew G. Knepley } 34919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34929566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 34939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34949566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 34959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &slocalPoints)); 34969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubleaves, &sremotePoints)); 34973982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 34983982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 34993982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 35003982b651SMatthew G. Knepley 35013982b651SMatthew G. Knepley if (subpoint < 0) continue; 35023982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 35033982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 35043982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 35053982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 350663a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 350763a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 35083982b651SMatthew G. Knepley ++sl; 35093982b651SMatthew G. Knepley } 35101dca8a05SBarry Smith PetscCheck(sl + ll == numSubleaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubleaves); 35119566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 35129566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 35133982b651SMatthew G. Knepley } 35143982b651SMatthew G. Knepley if (subpIS) { 35159566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpIS, &subpoints)); 35163982b651SMatthew G. Knepley } 35173982b651SMatthew G. Knepley } 3518212103e5SMatthew Knepley /* Filter labels */ 35199566063dSJacob Faibussowitsch PetscCall(DMPlexFilterLabels_Internal(dm, numSubPoints, subpoints, firstSubPoint, subdm)); 3520efa14ee0SMatthew G Knepley /* Cleanup */ 3521e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 35229566063dSJacob Faibussowitsch if (subpointIS[d]) PetscCall(ISRestoreIndices(subpointIS[d], &subpoints[d])); 35239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subpointIS[d])); 3524e6ccafaeSMatthew G Knepley } 35259566063dSJacob Faibussowitsch PetscCall(PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints)); 3526e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3527e6ccafaeSMatthew G Knepley } 3528e6ccafaeSMatthew G Knepley 3529158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 35303982b651SMatthew G. Knepley { 35313982b651SMatthew G. Knepley PetscFunctionBegin; 35329566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm)); 35333982b651SMatthew G. Knepley PetscFunctionReturn(0); 35343982b651SMatthew G. Knepley } 35353982b651SMatthew G. Knepley 3536d0fa310fSMatthew G. Knepley /*@ 3537e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3538e6ccafaeSMatthew G Knepley 3539e6ccafaeSMatthew G Knepley Input Parameters: 3540e6ccafaeSMatthew G Knepley + dm - The original mesh 3541158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3542158acfadSMatthew G. Knepley . value - The label value to use 3543158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3544e6ccafaeSMatthew G Knepley 3545e6ccafaeSMatthew G Knepley Output Parameter: 3546e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3547e6ccafaeSMatthew G Knepley 3548e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3549e6ccafaeSMatthew G Knepley 3550e6ccafaeSMatthew G Knepley Level: developer 3551e6ccafaeSMatthew G Knepley 3552db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3553830e53efSMatthew G. Knepley @*/ 3554158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3555e6ccafaeSMatthew G Knepley { 3556827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3557827c4036SVaclav Hapla PetscInt dim, cdim; 3558e6ccafaeSMatthew G Knepley 3559e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3560e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3561064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 5); 35629566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 35639566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 35649566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 35659566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 35669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 35679566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 35689566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolated(dm, &interpolated)); 356908401ef6SPierre Jolivet PetscCheck(interpolated != DMPLEX_INTERPOLATED_PARTIAL,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3570827c4036SVaclav Hapla if (interpolated) { 35719566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm)); 3572e6ccafaeSMatthew G Knepley } else { 35739566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm)); 3574e6ccafaeSMatthew G Knepley } 35755de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3576e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3577e6ccafaeSMatthew G Knepley } 3578e6ccafaeSMatthew G Knepley 357927c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3580766ab985SMatthew G. Knepley { 3581766ab985SMatthew G. Knepley MPI_Comm comm; 3582766ab985SMatthew G. Knepley DMLabel subpointMap; 3583766ab985SMatthew G. Knepley IS subvertexIS; 3584766ab985SMatthew G. Knepley const PetscInt *subVertices; 3585fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3586766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3587412e9a14SMatthew G. Knepley PetscInt c, f; 3588766ab985SMatthew G. Knepley 3589766ab985SMatthew G. Knepley PetscFunctionBegin; 35909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 3591766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 35929566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap)); 35939566063dSJacob Faibussowitsch PetscCall(DMPlexSetSubpointMap(subdm, subpointMap)); 35949566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&subpointMap)); 35959566063dSJacob Faibussowitsch PetscCall(DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm)); 3596766ab985SMatthew G. Knepley /* Setup chart */ 35979566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 0, &numSubVertices)); 35989566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(subpointMap, 2, &numSubCells)); 35999566063dSJacob Faibussowitsch PetscCall(DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices)); 36009566063dSJacob Faibussowitsch PetscCall(DMPlexSetVTKCellHeight(subdm, 1)); 3601766ab985SMatthew G. Knepley /* Set cone sizes */ 3602766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3603766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3604766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 36059566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(subpointMap, 0, &subvertexIS)); 36069566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISGetIndices(subvertexIS, &subVertices)); 3607766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 36089566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, c, 1)); 3609766ab985SMatthew G. Knepley } 3610766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 36119566063dSJacob Faibussowitsch PetscCall(DMPlexSetConeSize(subdm, f, nFV)); 3612766ab985SMatthew G. Knepley } 36139566063dSJacob Faibussowitsch PetscCall(DMSetUp(subdm)); 3614766ab985SMatthew G. Knepley /* Create face cones */ 36159566063dSJacob Faibussowitsch PetscCall(DMPlexGetMaxSizes(dm, &maxConeSize, NULL)); 36169566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 3617766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3618766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3619766ab985SMatthew G. Knepley const PetscInt subcell = c; 362087feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3621412e9a14SMatthew G. Knepley PetscBool isHybrid; 362287feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3623766ab985SMatthew G. Knepley 36249566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid)); 3625412e9a14SMatthew G. Knepley if (!isHybrid) continue; 36269566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, cell, &cone)); 362787feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 36289566063dSJacob Faibussowitsch PetscCall(PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex)); 362987feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 363087feddfdSMatthew G. Knepley } 36319566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, newFacePoint, subface)); 36329566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, subcell, &newFacePoint)); 36339566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, nFV, cone, &numCells, &cells)); 363427234c99SMatthew G. Knepley /* Not true in parallel 363508401ef6SPierre Jolivet PetscCheck(numCells == 2,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 363687feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 363787feddfdSMatthew G. Knepley PetscInt negsubcell; 3638412e9a14SMatthew G. Knepley PetscBool isHybrid; 3639766ab985SMatthew G. Knepley 36409566063dSJacob Faibussowitsch PetscCall(DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid)); 3641412e9a14SMatthew G. Knepley if (isHybrid) continue; 364287feddfdSMatthew G. Knepley /* I know this is a crap search */ 364387feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 364487feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3645766ab985SMatthew G. Knepley } 364663a3b9bcSJacob Faibussowitsch PetscCheck(negsubcell != numSubCells,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %" PetscInt_FMT, cell); 36479566063dSJacob Faibussowitsch PetscCall(DMPlexSetCone(subdm, negsubcell, &newFacePoint)); 3648766ab985SMatthew G. Knepley } 36499566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells)); 365087feddfdSMatthew G. Knepley ++newFacePoint; 3651766ab985SMatthew G. Knepley } 36529566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface)); 36539566063dSJacob Faibussowitsch PetscCall(DMPlexSymmetrize(subdm)); 36549566063dSJacob Faibussowitsch PetscCall(DMPlexStratify(subdm)); 3655766ab985SMatthew G. Knepley /* Build coordinates */ 3656766ab985SMatthew G. Knepley { 3657766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3658766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3659766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3660c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 366124640c55SToby Isaac const char *name; 3662766ab985SMatthew G. Knepley 36639566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 36649566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordSection)); 36659566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 36669566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(subdm, &subCoordSection)); 36679566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(subCoordSection, 1)); 36689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(coordSection, 0, &numComp)); 36699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldComponents(subCoordSection, 0, numComp)); 36709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices)); 3671766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3672766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3673766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3674766ab985SMatthew G. Knepley PetscInt dof; 3675766ab985SMatthew G. Knepley 36769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36779566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(subCoordSection, subvertex, dof)); 36789566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof)); 3679766ab985SMatthew G. Knepley } 36809566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(subCoordSection)); 36819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(subCoordSection, &coordSize)); 36829566063dSJacob Faibussowitsch PetscCall(VecCreate(PETSC_COMM_SELF, &subCoordinates)); 36839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)coordinates,&name)); 36849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)subCoordinates,name)); 36859566063dSJacob Faibussowitsch PetscCall(VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE)); 36869566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(subCoordinates, cdim)); 36879566063dSJacob Faibussowitsch PetscCall(VecSetType(subCoordinates,VECSTANDARD)); 36889566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 36899566063dSJacob Faibussowitsch PetscCall(VecGetArray(subCoordinates, &subCoords)); 3690766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3691766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3692766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3693766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3694766ab985SMatthew G. Knepley 36959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordSection, vertex, &dof)); 36969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordSection, vertex, &off)); 36979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(subCoordSection, subvertex, &sdof)); 36989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(subCoordSection, subvertex, &soff)); 369963a3b9bcSJacob Faibussowitsch PetscCheck(dof == sdof,comm, PETSC_ERR_PLIB, "Coordinate dimension %" PetscInt_FMT " on subvertex %" PetscInt_FMT ", vertex %" PetscInt_FMT " should be %" PetscInt_FMT, sdof, subvertex, vertex, dof); 3700766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3701766ab985SMatthew G. Knepley } 37029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 37039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(subCoordinates, &subCoords)); 37049566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(subdm, subCoordinates)); 37059566063dSJacob Faibussowitsch PetscCall(VecDestroy(&subCoordinates)); 3706766ab985SMatthew G. Knepley } 3707aca35d17SMatthew G. Knepley /* Build SF */ 3708aca35d17SMatthew G. Knepley CHKMEMQ; 3709aca35d17SMatthew G. Knepley { 3710aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3711aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3712bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3713aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3714bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 371549c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3716bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3717aca35d17SMatthew G. Knepley 37189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank)); 37199566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sfPoint)); 37209566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(subdm, &sfPointSub)); 37219566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 37229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 37239566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints)); 3724aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3725aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 37269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners)); 3727bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3728bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3729bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3730bdcf2095SMatthew G. Knepley } 37319e0823b2SMatthew G. Knepley /* Set subleaves */ 3732aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3733aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3734bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3735aca35d17SMatthew G. Knepley 373663a3b9bcSJacob Faibussowitsch PetscCheck(!(point < vStart) || !(point >= vEnd),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %" PetscInt_FMT, point); 3737bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3738bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3739bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3740bdcf2095SMatthew G. Knepley ++numSubLeaves; 3741aca35d17SMatthew G. Knepley } 37429e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 37439e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 37449e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 37459e0823b2SMatthew G. Knepley 37469e0823b2SMatthew G. Knepley if (subPoint < 0) { 37479e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 37489e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 37499e0823b2SMatthew G. Knepley } else { 37509e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 37519e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 37529e0823b2SMatthew G. Knepley } 3753bdcf2095SMatthew G. Knepley } 37549566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37559566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC)); 37569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 37579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints,MPI_REPLACE)); 37589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &slocalPoints)); 37599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numSubLeaves, &sremotePoints)); 376049c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3761bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3762bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3763aca35d17SMatthew G. Knepley 3764aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 376549c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3766aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3767bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3768bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 376963a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].rank >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %" PetscInt_FMT, point); 377063a3b9bcSJacob Faibussowitsch PetscCheck(sremotePoints[sl].index >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %" PetscInt_FMT, point); 3771aca35d17SMatthew G. Knepley ++sl; 3772aca35d17SMatthew G. Knepley } 37739566063dSJacob Faibussowitsch PetscCall(PetscFree2(newLocalPoints,newOwners)); 37741dca8a05SBarry Smith PetscCheck(sl + ll == numSubLeaves,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %" PetscInt_FMT " + %" PetscInt_FMT " != %" PetscInt_FMT, sl, ll, numSubLeaves); 37759566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER)); 3776aca35d17SMatthew G. Knepley } 3777aca35d17SMatthew G. Knepley } 3778aca35d17SMatthew G. Knepley CHKMEMQ; 3779766ab985SMatthew G. Knepley /* Cleanup */ 37809566063dSJacob Faibussowitsch if (subvertexIS) PetscCall(ISRestoreIndices(subvertexIS, &subVertices)); 37819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&subvertexIS)); 37829566063dSJacob Faibussowitsch PetscCall(PetscFree(subCells)); 3783766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3784766ab985SMatthew G. Knepley } 3785766ab985SMatthew G. Knepley 37863982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3787766ab985SMatthew G. Knepley { 37883982b651SMatthew G. Knepley DMLabel label = NULL; 3789766ab985SMatthew G. Knepley 3790766ab985SMatthew G. Knepley PetscFunctionBegin; 37919566063dSJacob Faibussowitsch if (labelname) PetscCall(DMGetLabel(dm, labelname, &label)); 37929566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm)); 3793766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3794766ab985SMatthew G. Knepley } 3795766ab985SMatthew G. Knepley 3796c08575a3SMatthew G. Knepley /*@C 37977d2fefb6SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label can be given to restrict the cells. 3798766ab985SMatthew G. Knepley 3799766ab985SMatthew G. Knepley Input Parameters: 3800766ab985SMatthew G. Knepley + dm - The original mesh 380127c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 38027afc1a8bSJed Brown . label - A label name, or NULL 380327c04023SMatthew G. Knepley - value - A label value 3804766ab985SMatthew G. Knepley 3805766ab985SMatthew G. Knepley Output Parameter: 3806766ab985SMatthew G. Knepley . subdm - The surface mesh 3807766ab985SMatthew G. Knepley 3808766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3809766ab985SMatthew G. Knepley 3810766ab985SMatthew G. Knepley Level: developer 3811766ab985SMatthew G. Knepley 3812db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMPlexCreateSubmesh()` 3813c08575a3SMatthew G. Knepley @*/ 381427c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3815766ab985SMatthew G. Knepley { 3816c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3817766ab985SMatthew G. Knepley 3818766ab985SMatthew G. Knepley PetscFunctionBegin; 3819766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 382027c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 38219566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38229566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 38239566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), subdm)); 38249566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38259566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim-1)); 38269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 38279566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*subdm, cdim)); 3828766ab985SMatthew G. Knepley if (depth == dim) { 38299566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm)); 3830766ab985SMatthew G. Knepley } else { 38319566063dSJacob Faibussowitsch PetscCall(DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm)); 3832e6ccafaeSMatthew G Knepley } 38335de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3834e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3835e6ccafaeSMatthew G Knepley } 3836e6ccafaeSMatthew G Knepley 3837bec263e5SMatthew G. Knepley /*@ 3838bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3839bec263e5SMatthew G. Knepley 3840bec263e5SMatthew G. Knepley Input Parameters: 3841bec263e5SMatthew G. Knepley + dm - The original mesh 3842bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3843bec263e5SMatthew G. Knepley - value - The label value to use 3844bec263e5SMatthew G. Knepley 3845bec263e5SMatthew G. Knepley Output Parameter: 3846bec263e5SMatthew G. Knepley . subdm - The new mesh 3847bec263e5SMatthew G. Knepley 3848bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3849bec263e5SMatthew G. Knepley 3850bec263e5SMatthew G. Knepley Level: developer 3851bec263e5SMatthew G. Knepley 3852db781477SPatrick Sanan .seealso: `DMPlexGetSubpointMap()`, `DMGetLabel()`, `DMLabelSetValue()` 3853bec263e5SMatthew G. Knepley @*/ 3854bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3855bec263e5SMatthew G. Knepley { 3856bec263e5SMatthew G. Knepley PetscInt dim; 3857bec263e5SMatthew G. Knepley 3858bec263e5SMatthew G. Knepley PetscFunctionBegin; 3859bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3860064a246eSJacob Faibussowitsch PetscValidPointer(subdm, 4); 38619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 38629566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), subdm)); 38639566063dSJacob Faibussowitsch PetscCall(DMSetType(*subdm, DMPLEX)); 38649566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*subdm, dim)); 3865bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 38669566063dSJacob Faibussowitsch PetscCall(DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm)); 38675de52c6dSVaclav Hapla PetscCall(DMPlexCopy_Internal(dm, PETSC_TRUE, PETSC_TRUE, *subdm)); 3868bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3869bec263e5SMatthew G. Knepley } 3870bec263e5SMatthew G. Knepley 387164beef6dSMatthew G. Knepley /*@ 387264beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 387364beef6dSMatthew G. Knepley 387464beef6dSMatthew G. Knepley Input Parameter: 387564beef6dSMatthew G. Knepley . dm - The submesh DM 387664beef6dSMatthew G. Knepley 387764beef6dSMatthew G. Knepley Output Parameter: 387864beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 387964beef6dSMatthew G. Knepley 388064beef6dSMatthew G. Knepley Level: developer 388164beef6dSMatthew G. Knepley 3882db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 388364beef6dSMatthew G. Knepley @*/ 3884e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3885e6ccafaeSMatthew G Knepley { 3886e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3887e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3888e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 388965663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3890e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3891e6ccafaeSMatthew G Knepley } 3892e6ccafaeSMatthew G Knepley 3893c08575a3SMatthew G. Knepley /*@ 3894c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3895c08575a3SMatthew G. Knepley 3896c08575a3SMatthew G. Knepley Input Parameters: 3897c08575a3SMatthew G. Knepley + dm - The submesh DM 3898c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3899c08575a3SMatthew G. Knepley 3900c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3901c08575a3SMatthew G. Knepley 3902c08575a3SMatthew G. Knepley Level: developer 3903c08575a3SMatthew G. Knepley 3904db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointIS()` 3905c08575a3SMatthew G. Knepley @*/ 3906e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3907e6ccafaeSMatthew G Knepley { 3908e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3909285d324eSMatthew G. Knepley DMLabel tmp; 3910e6ccafaeSMatthew G Knepley 3911e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3912e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3913285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3914e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 39159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) mesh->subpointMap)); 39169566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&tmp)); 3917e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3918e6ccafaeSMatthew G Knepley } 3919e6ccafaeSMatthew G Knepley 392097d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 392197d8846cSMatthew Knepley { 392297d8846cSMatthew Knepley DMLabel spmap; 392397d8846cSMatthew Knepley PetscInt depth, d; 392497d8846cSMatthew Knepley 392597d8846cSMatthew Knepley PetscFunctionBegin; 39269566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 39279566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(dm, &depth)); 392897d8846cSMatthew Knepley if (spmap && depth >= 0) { 392997d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 393097d8846cSMatthew Knepley PetscInt *points, *depths; 393197d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 393297d8846cSMatthew Knepley 39339566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 393463a3b9bcSJacob Faibussowitsch PetscCheck(!pStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %" PetscInt_FMT, pStart); 39359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pEnd, &points)); 39369566063dSJacob Faibussowitsch PetscCall(DMGetWorkArray(dm, depth+1, MPIU_INT, &depths)); 393797d8846cSMatthew Knepley depths[0] = depth; 393897d8846cSMatthew Knepley depths[1] = 0; 393997d8846cSMatthew Knepley for (d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 394097d8846cSMatthew Knepley for (d = 0, off = 0; d <= depth; ++d) { 394197d8846cSMatthew Knepley const PetscInt dep = depths[d]; 394297d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 394397d8846cSMatthew Knepley 39449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd)); 39459566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(spmap, dep, &n)); 394697d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 394763a3b9bcSJacob Faibussowitsch PetscCheck(n == depEnd-depStart,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " at depth %" PetscInt_FMT " should be %" PetscInt_FMT, n, dep, depEnd-depStart); 394897d8846cSMatthew Knepley } else { 394997d8846cSMatthew Knepley if (!n) { 395097d8846cSMatthew Knepley if (d == 0) { 395197d8846cSMatthew Knepley /* Missing cells */ 395297d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 395397d8846cSMatthew Knepley } else { 395497d8846cSMatthew Knepley /* Missing faces */ 395597d8846cSMatthew Knepley for (p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 395697d8846cSMatthew Knepley } 395797d8846cSMatthew Knepley } 395897d8846cSMatthew Knepley } 395997d8846cSMatthew Knepley if (n) { 396097d8846cSMatthew Knepley IS is; 396197d8846cSMatthew Knepley const PetscInt *opoints; 396297d8846cSMatthew Knepley 39639566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(spmap, dep, &is)); 39649566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &opoints)); 396597d8846cSMatthew Knepley for (p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 39669566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &opoints)); 39679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 396897d8846cSMatthew Knepley } 396997d8846cSMatthew Knepley } 39709566063dSJacob Faibussowitsch PetscCall(DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths)); 397163a3b9bcSJacob Faibussowitsch PetscCheck(off == pEnd,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %" PetscInt_FMT " should be %" PetscInt_FMT, off, pEnd); 39729566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS)); 39739566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState)); 397497d8846cSMatthew Knepley } 397597d8846cSMatthew Knepley PetscFunctionReturn(0); 397697d8846cSMatthew Knepley } 397797d8846cSMatthew Knepley 397864beef6dSMatthew G. Knepley /*@ 397997d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3980e6ccafaeSMatthew G Knepley 3981e6ccafaeSMatthew G Knepley Input Parameter: 3982e6ccafaeSMatthew G Knepley . dm - The submesh DM 3983e6ccafaeSMatthew G Knepley 3984e6ccafaeSMatthew G Knepley Output Parameter: 39850298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3986e6ccafaeSMatthew G Knepley 39873982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 398864beef6dSMatthew G. Knepley 398964beef6dSMatthew G. Knepley Level: developer 399064beef6dSMatthew G. Knepley 3991db781477SPatrick Sanan .seealso: `DMPlexCreateSubmesh()`, `DMPlexGetSubpointMap()` 399264beef6dSMatthew G. Knepley @*/ 399397d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3994e6ccafaeSMatthew G Knepley { 399597d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 399697d8846cSMatthew Knepley DMLabel spmap; 399797d8846cSMatthew Knepley PetscObjectState state; 3998e6ccafaeSMatthew G Knepley 3999e6ccafaeSMatthew G Knepley PetscFunctionBegin; 4000e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4001e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 40029566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(dm, &spmap)); 40039566063dSJacob Faibussowitsch PetscCall(PetscObjectStateGet((PetscObject) spmap, &state)); 40049566063dSJacob Faibussowitsch if (state != mesh->subpointState || !mesh->subpointIS) PetscCall(DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS)); 400597d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 4006e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 4007e6ccafaeSMatthew G Knepley } 4008559a1558SMatthew G. Knepley 4009559a1558SMatthew G. Knepley /*@ 4010a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 4011559a1558SMatthew G. Knepley 4012559a1558SMatthew G. Knepley Input Parameters: 4013a6e0b375SMatthew G. Knepley + dmA - The first DM 4014a6e0b375SMatthew G. Knepley - dmB - The second DM 4015559a1558SMatthew G. Knepley 4016559a1558SMatthew G. Knepley Output Parameter: 4017a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 4018559a1558SMatthew G. Knepley 4019a6e0b375SMatthew G. Knepley Level: intermediate 4020559a1558SMatthew G. Knepley 4021db781477SPatrick Sanan .seealso: `DMGetEnclosurePoint()` 4022559a1558SMatthew G. Knepley @*/ 4023a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 4024559a1558SMatthew G. Knepley { 4025a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 4026559a1558SMatthew G. Knepley DMLabel spmap; 4027a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 4028559a1558SMatthew G. Knepley 402944171101SMatthew G. Knepley PetscFunctionBegin; 4030a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 4031a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 4032a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 4033a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 4034064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 4035a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 40369566063dSJacob Faibussowitsch PetscCall(DMConvert(dmA, DMPLEX, &plexA)); 40379566063dSJacob Faibussowitsch PetscCall(DMConvert(dmB, DMPLEX, &plexB)); 40389566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexA, &pStartA, &pEndA)); 40399566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(plexB, &pStartB, &pEndB)); 4040a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 4041a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 4042a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 4043a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 4044a6e0b375SMatthew G. Knepley goto end; 4045559a1558SMatthew G. Knepley } 4046a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 4047a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 4048a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 4049a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 40509566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointMap(sdm, &spmap)); 4051a6e0b375SMatthew G. Knepley if (!spmap) goto end; 4052a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 4053a6e0b375SMatthew G. Knepley if (NpA > NpB) { 4054a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 4055a6e0b375SMatthew G. Knepley } else { 4056a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 4057a6e0b375SMatthew G. Knepley } 4058a6e0b375SMatthew G. Knepley end: 40599566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexA)); 40609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plexB)); 4061559a1558SMatthew G. Knepley PetscFunctionReturn(0); 4062559a1558SMatthew G. Knepley } 406344171101SMatthew G. Knepley 406444171101SMatthew G. Knepley /*@ 4065a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 406644171101SMatthew G. Knepley 406744171101SMatthew G. Knepley Input Parameters: 4068a6e0b375SMatthew G. Knepley + dmA - The first DM 4069a6e0b375SMatthew G. Knepley . dmB - The second DM 4070a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 4071a6e0b375SMatthew G. Knepley - pB - A point of dmB 407244171101SMatthew G. Knepley 407344171101SMatthew G. Knepley Output Parameter: 4074a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 407544171101SMatthew G. Knepley 4076a6e0b375SMatthew G. Knepley Level: intermediate 407744171101SMatthew G. Knepley 4078db781477SPatrick Sanan .seealso: `DMGetEnclosureRelation()` 407944171101SMatthew G. Knepley @*/ 4080a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 408144171101SMatthew G. Knepley { 4082a6e0b375SMatthew G. Knepley DM sdm; 4083a6e0b375SMatthew G. Knepley IS subpointIS; 4084a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 4085a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 408644171101SMatthew G. Knepley 408744171101SMatthew G. Knepley PetscFunctionBegin; 4088a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 4089a6e0b375SMatthew G. Knepley switch (etype) { 4090a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 4091a6e0b375SMatthew G. Knepley sdm = dmB; 40929566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 40939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 4094a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 40959566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4096a6e0b375SMatthew G. Knepley break; 4097a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 4098a6e0b375SMatthew G. Knepley sdm = dmA; 40999566063dSJacob Faibussowitsch PetscCall(DMPlexGetSubpointIS(sdm, &subpointIS)); 41009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(subpointIS, &numSubpoints)); 41019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(subpointIS, &subpoints)); 41029566063dSJacob Faibussowitsch PetscCall(PetscFindInt(pB, numSubpoints, subpoints, pA)); 4103a6e0b375SMatthew G. Knepley if (*pA < 0) { 41049566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmA, NULL, "-dm_enc_A_view")); 41059566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(dmB, NULL, "-dm_enc_B_view")); 410663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %" PetscInt_FMT " not found in submesh", pB); 4107a6e0b375SMatthew G. Knepley } 41089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(subpointIS, &subpoints)); 4109a6e0b375SMatthew G. Knepley break; 4110a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 4111a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 4112a6e0b375SMatthew G. Knepley *pA = pB;break; 4113a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 4114a6e0b375SMatthew G. Knepley { 4115a6e0b375SMatthew G. Knepley DMEnclosureType enc; 411644171101SMatthew G. Knepley 41179566063dSJacob Faibussowitsch PetscCall(DMGetEnclosureRelation(dmA, dmB, &enc)); 41189566063dSJacob Faibussowitsch PetscCall(DMGetEnclosurePoint(dmA, dmB, enc, pB, pA)); 4119a6e0b375SMatthew G. Knepley } 4120a6e0b375SMatthew G. Knepley break; 412198921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 412244171101SMatthew G. Knepley } 412344171101SMatthew G. Knepley PetscFunctionReturn(0); 412444171101SMatthew G. Knepley } 4125