1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> 2552f7358SJed Brown #include <../src/sys/classes/viewer/impls/vtk/vtkvimpl.h> 3552f7358SJed Brown 4552f7358SJed Brown typedef struct { 5552f7358SJed Brown PetscInt nvertices; 6552f7358SJed Brown PetscInt ncells; 7552f7358SJed Brown PetscInt nconn; /* number of entries in cell->vertex connectivity array */ 8552f7358SJed Brown } PieceInfo; 9552f7358SJed Brown 10552f7358SJed Brown #if defined(PETSC_USE_REAL_SINGLE) 11552f7358SJed Brown static const char precision[] = "Float32"; 12552f7358SJed Brown #elif defined(PETSC_USE_REAL_DOUBLE) 13552f7358SJed Brown static const char precision[] = "Float64"; 14552f7358SJed Brown #else 15552f7358SJed Brown static const char precision[] = "UnknownPrecision"; 16552f7358SJed Brown #endif 17552f7358SJed Brown 18552f7358SJed Brown static PetscErrorCode TransferWrite(PetscViewer viewer,FILE *fp,PetscMPIInt srank,PetscMPIInt root,const void *send,void *recv,PetscMPIInt count,PetscDataType datatype,PetscMPIInt tag) 19552f7358SJed Brown { 20552f7358SJed Brown PetscMPIInt rank; 21552f7358SJed Brown PetscErrorCode ierr; 22ce94432eSBarry Smith MPI_Comm comm; 23552f7358SJed Brown MPI_Datatype mpidatatype; 24552f7358SJed Brown 25552f7358SJed Brown PetscFunctionBegin; 26ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 27552f7358SJed Brown ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 28552f7358SJed Brown ierr = PetscDataTypeToMPIDataType(datatype,&mpidatatype);CHKERRQ(ierr); 29552f7358SJed Brown 30552f7358SJed Brown if (rank == srank && rank != root) { 31552f7358SJed Brown ierr = MPI_Send((void*)send,count,mpidatatype,root,tag,comm);CHKERRQ(ierr); 32552f7358SJed Brown } else if (rank == root) { 33552f7358SJed Brown const void *buffer; 34552f7358SJed Brown if (root == srank) { /* self */ 35552f7358SJed Brown buffer = send; 36552f7358SJed Brown } else { 37552f7358SJed Brown MPI_Status status; 38552f7358SJed Brown PetscMPIInt nrecv; 39552f7358SJed Brown ierr = MPI_Recv(recv,count,mpidatatype,srank,tag,comm,&status);CHKERRQ(ierr); 40552f7358SJed Brown ierr = MPI_Get_count(&status,mpidatatype,&nrecv);CHKERRQ(ierr); 41552f7358SJed Brown if (count != nrecv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Array size mismatch"); 42552f7358SJed Brown buffer = recv; 43552f7358SJed Brown } 44552f7358SJed Brown ierr = PetscViewerVTKFWrite(viewer,fp,buffer,count,datatype);CHKERRQ(ierr); 45552f7358SJed Brown } 46552f7358SJed Brown PetscFunctionReturn(0); 47552f7358SJed Brown } 48552f7358SJed Brown 49552f7358SJed Brown static PetscErrorCode DMPlexGetVTKConnectivity(DM dm,PieceInfo *piece,PetscVTKInt **oconn,PetscVTKInt **ooffsets,PetscVTKType **otypes) 50552f7358SJed Brown { 51552f7358SJed Brown PetscErrorCode ierr; 52552f7358SJed Brown PetscVTKInt *conn,*offsets; 53552f7358SJed Brown PetscVTKType *types; 54552f7358SJed Brown PetscInt dim,vStart,vEnd,cStart,cEnd,pStart,pEnd,cellHeight,cMax,numLabelCells,hasLabel,c,v,countcell,countconn; 55552f7358SJed Brown 56552f7358SJed Brown PetscFunctionBegin; 57dcca6d9dSJed Brown ierr = PetscMalloc3(piece->nconn,&conn,piece->ncells,&offsets,piece->ncells,&types);CHKERRQ(ierr); 58552f7358SJed Brown 59c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm,&dim);CHKERRQ(ierr); 60552f7358SJed Brown ierr = DMPlexGetChart(dm,&pStart,&pEnd);CHKERRQ(ierr); 61552f7358SJed Brown ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 62552f7358SJed Brown ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 63552f7358SJed Brown ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 640298fd71SBarry Smith ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 658865f1eaSKarl Rupp if (cMax >= 0) cEnd = PetscMin(cEnd, cMax); 66c58f1c22SToby Isaac ierr = DMGetStratumSize(dm, "vtk", 1, &numLabelCells);CHKERRQ(ierr); 67552f7358SJed Brown hasLabel = numLabelCells > 0 ? PETSC_TRUE : PETSC_FALSE; 68552f7358SJed Brown 69552f7358SJed Brown countcell = 0; 70552f7358SJed Brown countconn = 0; 71552f7358SJed Brown for (c = cStart; c < cEnd; ++c) { 720298fd71SBarry Smith PetscInt *closure = NULL; 73724b5320SMatthew G. Knepley PetscInt closureSize,nverts,celltype,startoffset,nC=0; 74552f7358SJed Brown 75552f7358SJed Brown if (hasLabel) { 76552f7358SJed Brown PetscInt value; 77552f7358SJed Brown 78c58f1c22SToby Isaac ierr = DMGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 79552f7358SJed Brown if (value != 1) continue; 80552f7358SJed Brown } 81552f7358SJed Brown startoffset = countconn; 82552f7358SJed Brown ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 83552f7358SJed Brown for (v = 0; v < closureSize*2; v += 2) { 84552f7358SJed Brown if ((closure[v] >= vStart) && (closure[v] < vEnd)) { 85552f7358SJed Brown conn[countconn++] = closure[v] - vStart; 86724b5320SMatthew G. Knepley ++nC; 87552f7358SJed Brown } 88552f7358SJed Brown } 89552f7358SJed Brown ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 90724b5320SMatthew G. Knepley ierr = DMPlexInvertCell(dim, nC, &conn[countconn-nC]);CHKERRQ(ierr); 918865f1eaSKarl Rupp 92552f7358SJed Brown offsets[countcell] = countconn; 938865f1eaSKarl Rupp 94552f7358SJed Brown nverts = countconn - startoffset; 95*de0a4605SMatthew G. Knepley ierr = DMPlexVTKGetCellType_Internal(dm,dim,nverts,&celltype);CHKERRQ(ierr); 968865f1eaSKarl Rupp 97552f7358SJed Brown types[countcell] = celltype; 98552f7358SJed Brown countcell++; 99552f7358SJed Brown } 100552f7358SJed Brown if (countcell != piece->ncells) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent cell count"); 101552f7358SJed Brown if (countconn != piece->nconn) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inconsistent connectivity count"); 102552f7358SJed Brown *oconn = conn; 103552f7358SJed Brown *ooffsets = offsets; 104552f7358SJed Brown *otypes = types; 105552f7358SJed Brown PetscFunctionReturn(0); 106552f7358SJed Brown } 107552f7358SJed Brown 108552f7358SJed Brown /* 109552f7358SJed Brown Write all fields that have been provided to the viewer 110552f7358SJed Brown Multi-block XML format with binary appended data. 111552f7358SJed Brown */ 112552f7358SJed Brown PetscErrorCode DMPlexVTKWriteAll_VTU(DM dm,PetscViewer viewer) 113552f7358SJed Brown { 114ce94432eSBarry Smith MPI_Comm comm; 115552f7358SJed Brown PetscViewer_VTK *vtk = (PetscViewer_VTK*)viewer->data; 116552f7358SJed Brown PetscViewerVTKObjectLink link; 117552f7358SJed Brown FILE *fp; 118552f7358SJed Brown PetscMPIInt rank,size,tag; 119552f7358SJed Brown PetscErrorCode ierr; 1203baa072aSToby Isaac PetscInt dimEmbed,cellHeight,cStart,cEnd,vStart,vEnd,cMax,numLabelCells,hasLabel,c,v,r,i; 1210298fd71SBarry Smith PieceInfo piece,*gpiece = NULL; 1220298fd71SBarry Smith void *buffer = NULL; 123552f7358SJed Brown 124552f7358SJed Brown PetscFunctionBegin; 125ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 126552f7358SJed Brown #if defined(PETSC_USE_COMPLEX) 127ce94432eSBarry Smith SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"Complex values not supported"); 128552f7358SJed Brown #endif 129552f7358SJed Brown ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 130552f7358SJed Brown ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 131552f7358SJed Brown tag = ((PetscObject)viewer)->tag; 132552f7358SJed Brown 133552f7358SJed Brown ierr = PetscFOpen(comm,vtk->filename,"wb",&fp);CHKERRQ(ierr); 134552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<?xml version=\"1.0\"?>\n");CHKERRQ(ierr); 135519f805aSKarl Rupp #if defined(PETSC_WORDS_BIGENDIAN) 136552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<VTKFile type=\"UnstructuredGrid\" version=\"0.1\" byte_order=\"BigEndian\">\n");CHKERRQ(ierr); 137552f7358SJed Brown #else 138552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"<VTKFile type=\"UnstructuredGrid\" version=\"0.1\" byte_order=\"LittleEndian\">\n");CHKERRQ(ierr); 139552f7358SJed Brown #endif 140552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <UnstructuredGrid>\n");CHKERRQ(ierr); 141552f7358SJed Brown 1423baa072aSToby Isaac ierr = DMGetCoordinateDim(dm, &dimEmbed);CHKERRQ(ierr); 143552f7358SJed Brown ierr = DMPlexGetVTKCellHeight(dm, &cellHeight);CHKERRQ(ierr); 144552f7358SJed Brown ierr = DMPlexGetHeightStratum(dm, cellHeight, &cStart, &cEnd);CHKERRQ(ierr); 145552f7358SJed Brown ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1460298fd71SBarry Smith ierr = DMPlexGetHybridBounds(dm, &cMax, NULL, NULL, NULL);CHKERRQ(ierr); 1478865f1eaSKarl Rupp if (cMax >= 0) cEnd = PetscMin(cEnd, cMax); 148c58f1c22SToby Isaac ierr = DMGetStratumSize(dm, "vtk", 1, &numLabelCells);CHKERRQ(ierr); 1498865f1eaSKarl Rupp 150552f7358SJed Brown hasLabel = numLabelCells > 0 ? PETSC_TRUE : PETSC_FALSE; 151552f7358SJed Brown piece.nvertices = vEnd - vStart; 152552f7358SJed Brown piece.ncells = 0; 153552f7358SJed Brown piece.nconn = 0; 154552f7358SJed Brown for (c = cStart; c < cEnd; ++c) { 1550298fd71SBarry Smith PetscInt *closure = NULL; 156552f7358SJed Brown PetscInt closureSize; 157552f7358SJed Brown 158552f7358SJed Brown if (hasLabel) { 159552f7358SJed Brown PetscInt value; 160552f7358SJed Brown 161c58f1c22SToby Isaac ierr = DMGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 162552f7358SJed Brown if (value != 1) continue; 163552f7358SJed Brown } 164552f7358SJed Brown ierr = DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 165552f7358SJed Brown for (v = 0; v < closureSize*2; v += 2) { 166552f7358SJed Brown if ((closure[v] >= vStart) && (closure[v] < vEnd)) piece.nconn++; 167552f7358SJed Brown } 168552f7358SJed Brown ierr = DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 169552f7358SJed Brown piece.ncells++; 170552f7358SJed Brown } 171785e854fSJed Brown if (!rank) {ierr = PetscMalloc1(size,&gpiece);CHKERRQ(ierr);} 172552f7358SJed Brown ierr = MPI_Gather((PetscInt*)&piece,sizeof(piece)/sizeof(PetscInt),MPIU_INT,(PetscInt*)gpiece,sizeof(piece)/sizeof(PetscInt),MPIU_INT,0,comm);CHKERRQ(ierr); 173552f7358SJed Brown 174552f7358SJed Brown /* 175552f7358SJed Brown * Write file header 176552f7358SJed Brown */ 177552f7358SJed Brown if (!rank) { 178552f7358SJed Brown PetscInt boffset = 0; 179552f7358SJed Brown 180552f7358SJed Brown for (r=0; r<size; r++) { 181552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Piece NumberOfPoints=\"%D\" NumberOfCells=\"%D\">\n",gpiece[r].nvertices,gpiece[r].ncells);CHKERRQ(ierr); 182552f7358SJed Brown /* Coordinate positions */ 183552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Points>\n");CHKERRQ(ierr); 184552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"%s\" Name=\"Position\" NumberOfComponents=\"3\" format=\"appended\" offset=\"%D\" />\n",precision,boffset);CHKERRQ(ierr); 185552f7358SJed Brown boffset += gpiece[r].nvertices*3*sizeof(PetscScalar) + sizeof(int); 186552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Points>\n");CHKERRQ(ierr); 187552f7358SJed Brown /* Cell connectivity */ 188552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <Cells>\n");CHKERRQ(ierr); 189552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"connectivity\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 190552f7358SJed Brown boffset += gpiece[r].nconn*sizeof(PetscInt) + sizeof(int); 191552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"offsets\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 192552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(PetscInt) + sizeof(int); 193552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"UInt8\" Name=\"types\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 194552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(unsigned char) + sizeof(int); 195552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Cells>\n");CHKERRQ(ierr); 196552f7358SJed Brown 197552f7358SJed Brown /* 198552f7358SJed Brown * Cell Data headers 199552f7358SJed Brown */ 200552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <CellData>\n");CHKERRQ(ierr); 201552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <DataArray type=\"Int32\" Name=\"Rank\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",boffset);CHKERRQ(ierr); 202552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(int) + sizeof(int); 203552f7358SJed Brown /* all the vectors */ 204552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 205552f7358SJed Brown Vec X = (Vec)link->vec; 2061cfafdd3SJed Brown PetscInt bs,nfields,field; 207552f7358SJed Brown const char *vecname = ""; 208552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 209552f7358SJed Brown if (((PetscObject)X)->name || link != vtk->link) { /* If the object is already named, use it. If it is past the first link, name it to disambiguate. */ 210552f7358SJed Brown ierr = PetscObjectGetName((PetscObject)X,&vecname);CHKERRQ(ierr); 211552f7358SJed Brown } 212552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,cStart,&bs);CHKERRQ(ierr); 2131cfafdd3SJed Brown ierr = PetscSectionGetNumFields(dm->defaultSection,&nfields);CHKERRQ(ierr); 2147ded4cbaSJed Brown for (field=0,i=0; field<(nfields?nfields:1); field++) { 2151cfafdd3SJed Brown PetscInt fbs,j; 216a00cdb45SToby Isaac PetscFV fv = NULL; 217a00cdb45SToby Isaac PetscObject f; 218a00cdb45SToby Isaac PetscClassId fClass; 2190298fd71SBarry Smith const char *fieldname = NULL; 2201cfafdd3SJed Brown char buf[256]; 2217ded4cbaSJed Brown if (nfields) { /* We have user-defined fields/components */ 2221cfafdd3SJed Brown ierr = PetscSectionGetFieldDof(dm->defaultSection,cStart,field,&fbs);CHKERRQ(ierr); 2231cfafdd3SJed Brown ierr = PetscSectionGetFieldName(dm->defaultSection,field,&fieldname);CHKERRQ(ierr); 2247ded4cbaSJed Brown } else fbs = bs; /* Say we have one field with 'bs' components */ 225a00cdb45SToby Isaac ierr = DMGetField(dm,field,&f);CHKERRQ(ierr); 226a00cdb45SToby Isaac ierr = PetscObjectGetClassId(f,&fClass);CHKERRQ(ierr); 227a00cdb45SToby Isaac if (fClass == PETSCFV_CLASSID) { 228a00cdb45SToby Isaac fv = (PetscFV) f; 229a00cdb45SToby Isaac } 230552f7358SJed Brown if (!fieldname) { 2311cfafdd3SJed Brown ierr = PetscSNPrintf(buf,sizeof(buf),"CellField%D",field);CHKERRQ(ierr); 232552f7358SJed Brown fieldname = buf; 233552f7358SJed Brown } 2341cfafdd3SJed Brown for (j=0; j<fbs; j++) { 235a00cdb45SToby Isaac const char *compName = NULL; 236a00cdb45SToby Isaac if (fv) { 237a00cdb45SToby Isaac ierr = PetscFVGetComponentName(fv,j,&compName);CHKERRQ(ierr); 238a00cdb45SToby Isaac } 239a00cdb45SToby Isaac if (compName) { 240a00cdb45SToby Isaac ierr = PetscFPrintf(comm,fp," <DataArray type=\"%s\" Name=\"%s%s.%s\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",precision,vecname,fieldname,compName,boffset);CHKERRQ(ierr); 241a00cdb45SToby Isaac } 242a00cdb45SToby Isaac else { 2431cfafdd3SJed Brown ierr = PetscFPrintf(comm,fp," <DataArray type=\"%s\" Name=\"%s%s.%D\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",precision,vecname,fieldname,j,boffset);CHKERRQ(ierr); 244a00cdb45SToby Isaac } 245552f7358SJed Brown boffset += gpiece[r].ncells*sizeof(PetscScalar) + sizeof(int); 2461cfafdd3SJed Brown i++; 247552f7358SJed Brown } 248552f7358SJed Brown } 2491cfafdd3SJed Brown if (i != bs) SETERRQ2(comm,PETSC_ERR_PLIB,"Total number of field components %D != block size %D",i,bs); 2501cfafdd3SJed Brown } 251552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </CellData>\n");CHKERRQ(ierr); 252552f7358SJed Brown 253552f7358SJed Brown /* 254552f7358SJed Brown * Point Data headers 255552f7358SJed Brown */ 256552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," <PointData>\n");CHKERRQ(ierr); 257552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 258552f7358SJed Brown Vec X = (Vec)link->vec; 2591cfafdd3SJed Brown PetscInt bs,nfields,field; 260552f7358SJed Brown const char *vecname = ""; 261552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 262552f7358SJed Brown if (((PetscObject)X)->name || link != vtk->link) { /* If the object is already named, use it. If it is past the first link, name it to disambiguate. */ 263552f7358SJed Brown ierr = PetscObjectGetName((PetscObject)X,&vecname);CHKERRQ(ierr); 264552f7358SJed Brown } 265552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 2661cfafdd3SJed Brown ierr = PetscSectionGetNumFields(dm->defaultSection,&nfields);CHKERRQ(ierr); 2677ded4cbaSJed Brown for (field=0,i=0; field<(nfields?nfields:1); field++) { 2681cfafdd3SJed Brown PetscInt fbs,j; 2691cfafdd3SJed Brown const char *fieldname = NULL; 2701cfafdd3SJed Brown char buf[256]; 2717ded4cbaSJed Brown if (nfields) { /* We have user-defined fields/components */ 2721cfafdd3SJed Brown ierr = PetscSectionGetFieldDof(dm->defaultSection,vStart,field,&fbs);CHKERRQ(ierr); 2731cfafdd3SJed Brown ierr = PetscSectionGetFieldName(dm->defaultSection,field,&fieldname);CHKERRQ(ierr); 2747ded4cbaSJed Brown } else fbs = bs; /* Say we have one field with 'bs' components */ 2751cfafdd3SJed Brown if (!fieldname) { 2761cfafdd3SJed Brown ierr = PetscSNPrintf(buf,sizeof(buf),"PointField%D",field);CHKERRQ(ierr); 2771cfafdd3SJed Brown fieldname = buf; 2781cfafdd3SJed Brown } 2791cfafdd3SJed Brown for (j=0; j<fbs; j++) { 2801cfafdd3SJed Brown ierr = PetscFPrintf(comm,fp," <DataArray type=\"%s\" Name=\"%s%s.%D\" NumberOfComponents=\"1\" format=\"appended\" offset=\"%D\" />\n",precision,vecname,fieldname,j,boffset);CHKERRQ(ierr); 281552f7358SJed Brown boffset += gpiece[r].nvertices*sizeof(PetscScalar) + sizeof(int); 282552f7358SJed Brown } 283552f7358SJed Brown } 2841cfafdd3SJed Brown } 285552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </PointData>\n");CHKERRQ(ierr); 286552f7358SJed Brown 287552f7358SJed Brown ierr = PetscFPrintf(PETSC_COMM_SELF,fp," </Piece>\n");CHKERRQ(ierr); 288552f7358SJed Brown } 289552f7358SJed Brown } 290552f7358SJed Brown 291552f7358SJed Brown ierr = PetscFPrintf(comm,fp," </UnstructuredGrid>\n");CHKERRQ(ierr); 292552f7358SJed Brown ierr = PetscFPrintf(comm,fp," <AppendedData encoding=\"raw\">\n");CHKERRQ(ierr); 293552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"_");CHKERRQ(ierr); 294552f7358SJed Brown 295552f7358SJed Brown if (!rank) { 296552f7358SJed Brown PetscInt maxsize = 0; 297552f7358SJed Brown for (r=0; r<size; r++) { 298552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].nvertices*3*sizeof(PetscScalar))); 299552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].ncells*sizeof(PetscScalar))); 300552f7358SJed Brown maxsize = PetscMax(maxsize, (PetscInt) (gpiece[r].nconn*sizeof(PetscVTKInt))); 301552f7358SJed Brown } 302552f7358SJed Brown ierr = PetscMalloc(maxsize,&buffer);CHKERRQ(ierr); 303552f7358SJed Brown } 304552f7358SJed Brown for (r=0; r<size; r++) { 305552f7358SJed Brown if (r == rank) { 306552f7358SJed Brown PetscInt nsend; 307552f7358SJed Brown { /* Position */ 308552f7358SJed Brown const PetscScalar *x; 3090298fd71SBarry Smith PetscScalar *y = NULL; 310552f7358SJed Brown Vec coords; 311552f7358SJed Brown nsend = piece.nvertices*3; 312552f7358SJed Brown ierr = DMGetCoordinatesLocal(dm,&coords);CHKERRQ(ierr); 313552f7358SJed Brown ierr = VecGetArrayRead(coords,&x);CHKERRQ(ierr); 3143baa072aSToby Isaac if (dimEmbed != 3) { 315785e854fSJed Brown ierr = PetscMalloc1(piece.nvertices*3,&y);CHKERRQ(ierr); 316552f7358SJed Brown for (i=0; i<piece.nvertices; i++) { 3173baa072aSToby Isaac y[i*3+0] = x[i*dimEmbed+0]; 3183baa072aSToby Isaac y[i*3+1] = (dimEmbed > 1) ? x[i*dimEmbed+1] : 0; 319552f7358SJed Brown y[i*3+2] = 0; 320552f7358SJed Brown } 321552f7358SJed Brown } 322552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y ? y : x,buffer,nsend,PETSC_SCALAR,tag);CHKERRQ(ierr); 323552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 324552f7358SJed Brown ierr = VecRestoreArrayRead(coords,&x);CHKERRQ(ierr); 325552f7358SJed Brown } 326552f7358SJed Brown { /* Connectivity, offsets, types */ 3273e869605SMatthew G. Knepley PetscVTKInt *connectivity = NULL, *offsets = NULL; 3283e869605SMatthew G. Knepley PetscVTKType *types = NULL; 329552f7358SJed Brown ierr = DMPlexGetVTKConnectivity(dm,&piece,&connectivity,&offsets,&types);CHKERRQ(ierr); 330552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,connectivity,buffer,piece.nconn,PETSC_INT32,tag);CHKERRQ(ierr); 331552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,offsets,buffer,piece.ncells,PETSC_INT32,tag);CHKERRQ(ierr); 332552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,types,buffer,piece.ncells,PETSC_UINT8,tag);CHKERRQ(ierr); 333552f7358SJed Brown ierr = PetscFree3(connectivity,offsets,types);CHKERRQ(ierr); 334552f7358SJed Brown } 335552f7358SJed Brown { /* Owners (cell data) */ 336552f7358SJed Brown PetscVTKInt *owners; 337785e854fSJed Brown ierr = PetscMalloc1(piece.ncells,&owners);CHKERRQ(ierr); 338552f7358SJed Brown for (i=0; i<piece.ncells; i++) owners[i] = rank; 339552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,owners,buffer,piece.ncells,PETSC_INT32,tag);CHKERRQ(ierr); 340552f7358SJed Brown ierr = PetscFree(owners);CHKERRQ(ierr); 341552f7358SJed Brown } 342552f7358SJed Brown /* Cell data */ 343552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 344552f7358SJed Brown Vec X = (Vec)link->vec; 345552f7358SJed Brown const PetscScalar *x; 346552f7358SJed Brown PetscScalar *y; 347552f7358SJed Brown PetscInt bs; 348552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 349552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,cStart,&bs);CHKERRQ(ierr); 350552f7358SJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 351785e854fSJed Brown ierr = PetscMalloc1(piece.ncells,&y);CHKERRQ(ierr); 352552f7358SJed Brown for (i=0; i<bs; i++) { 353552f7358SJed Brown PetscInt cnt; 354552f7358SJed Brown for (c=cStart,cnt=0; c<cEnd; c++) { 355640bce14SSatish Balay PetscScalar *xpoint; 356552f7358SJed Brown if (hasLabel) { /* Ignore some cells */ 357552f7358SJed Brown PetscInt value; 358c58f1c22SToby Isaac ierr = DMGetLabelValue(dm, "vtk", c, &value);CHKERRQ(ierr); 359552f7358SJed Brown if (value != 1) continue; 360552f7358SJed Brown } 361552f7358SJed Brown ierr = DMPlexPointLocalRead(dm,c,x,&xpoint);CHKERRQ(ierr); 362552f7358SJed Brown y[cnt++] = xpoint[i]; 363552f7358SJed Brown } 364552f7358SJed Brown if (cnt != piece.ncells) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Count does not match"); 365552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y,buffer,piece.ncells,PETSC_SCALAR,tag);CHKERRQ(ierr); 366552f7358SJed Brown } 367552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 368552f7358SJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 369552f7358SJed Brown } 370552f7358SJed Brown 371552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 372552f7358SJed Brown Vec X = (Vec)link->vec; 373552f7358SJed Brown const PetscScalar *x; 374552f7358SJed Brown PetscScalar *y; 375552f7358SJed Brown PetscInt bs; 376552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 377552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 378552f7358SJed Brown ierr = VecGetArrayRead(X,&x);CHKERRQ(ierr); 379785e854fSJed Brown ierr = PetscMalloc1(piece.nvertices,&y);CHKERRQ(ierr); 380552f7358SJed Brown for (i=0; i<bs; i++) { 381552f7358SJed Brown PetscInt cnt; 382552f7358SJed Brown for (v=vStart,cnt=0; v<vEnd; v++) { 383640bce14SSatish Balay PetscScalar *xpoint; 38437045cddSJed Brown ierr = DMPlexPointLocalRead(dm,v,x,&xpoint);CHKERRQ(ierr); 385552f7358SJed Brown y[cnt++] = xpoint[i]; 386552f7358SJed Brown } 387552f7358SJed Brown if (cnt != piece.nvertices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Count does not match"); 388552f7358SJed Brown ierr = TransferWrite(viewer,fp,r,0,y,buffer,piece.nvertices,PETSC_SCALAR,tag);CHKERRQ(ierr); 389552f7358SJed Brown } 390552f7358SJed Brown ierr = PetscFree(y);CHKERRQ(ierr); 391552f7358SJed Brown ierr = VecRestoreArrayRead(X,&x);CHKERRQ(ierr); 392552f7358SJed Brown } 393552f7358SJed Brown } else if (!rank) { 3940298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nvertices*3,PETSC_SCALAR,tag);CHKERRQ(ierr); /* positions */ 3950298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nconn,PETSC_INT32,tag);CHKERRQ(ierr); /* connectivity */ 3960298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_INT32,tag);CHKERRQ(ierr); /* offsets */ 3970298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_UINT8,tag);CHKERRQ(ierr); /* types */ 3980298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_INT32,tag);CHKERRQ(ierr); /* owner rank (cells) */ 399552f7358SJed Brown /* all cell data */ 400552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 401552f7358SJed Brown PetscInt bs; 402552f7358SJed Brown if ((link->ft != PETSC_VTK_CELL_FIELD) && (link->ft != PETSC_VTK_CELL_VECTOR_FIELD)) continue; 403fd68c46aSJed Brown ierr = PetscSectionGetDof(dm->defaultSection,cStart,&bs);CHKERRQ(ierr); 404552f7358SJed Brown for (i=0; i<bs; i++) { 4050298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].ncells,PETSC_SCALAR,tag);CHKERRQ(ierr); 406552f7358SJed Brown } 407552f7358SJed Brown } 408552f7358SJed Brown /* all point data */ 409552f7358SJed Brown for (link=vtk->link; link; link=link->next) { 410552f7358SJed Brown PetscInt bs; 411552f7358SJed Brown if ((link->ft != PETSC_VTK_POINT_FIELD) && (link->ft != PETSC_VTK_POINT_VECTOR_FIELD)) continue; 412552f7358SJed Brown ierr = PetscSectionGetDof(dm->defaultSection,vStart,&bs);CHKERRQ(ierr); 413552f7358SJed Brown for (i=0; i<bs; i++) { 4140298fd71SBarry Smith ierr = TransferWrite(viewer,fp,r,0,NULL,buffer,gpiece[r].nvertices,PETSC_SCALAR,tag);CHKERRQ(ierr); 415552f7358SJed Brown } 416552f7358SJed Brown } 417552f7358SJed Brown } 418552f7358SJed Brown } 419552f7358SJed Brown ierr = PetscFree(gpiece);CHKERRQ(ierr); 420552f7358SJed Brown ierr = PetscFree(buffer);CHKERRQ(ierr); 421552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"\n </AppendedData>\n");CHKERRQ(ierr); 422552f7358SJed Brown ierr = PetscFPrintf(comm,fp,"</VTKFile>\n");CHKERRQ(ierr); 4235e32de72SMatthew G. Knepley ierr = PetscFClose(comm,fp);CHKERRQ(ierr); 424552f7358SJed Brown PetscFunctionReturn(0); 425552f7358SJed Brown } 426