xref: /petsc/src/dm/impls/plex/tests/ex1.c (revision 09c713e722b26f6d50277bd68d561bb4c256632a)
1c4762a1bSJed Brown static char help[] = "Tests various DMPlex routines to construct, refine and distribute a mesh.\n\n";
2c4762a1bSJed Brown 
3c4762a1bSJed Brown #include <petscdmplex.h>
40a19bb7dSprj- #include <petscsf.h>
5c4762a1bSJed Brown 
6c4762a1bSJed Brown typedef enum {BOX, CYLINDER, SPHERE, BALL} DomainShape;
7c4762a1bSJed Brown enum {STAGE_LOAD, STAGE_DISTRIBUTE, STAGE_REFINE, STAGE_OVERLAP};
8c4762a1bSJed Brown 
9c4762a1bSJed Brown typedef struct {
10c4762a1bSJed Brown   DM            dm;                /* REQUIRED in order to use SNES evaluation functions */
11c4762a1bSJed Brown   PetscInt      debug;             /* The debugging level */
12c4762a1bSJed Brown   PetscLogEvent createMeshEvent;
13c4762a1bSJed Brown   PetscLogStage stages[4];
14c4762a1bSJed Brown   /* Domain and mesh definition */
15c4762a1bSJed Brown   PetscInt      dim;                             /* The topological mesh dimension */
16c4762a1bSJed Brown   PetscBool     interpolate;                     /* Generate intermediate mesh elements */
17c4762a1bSJed Brown   PetscReal     refinementLimit;                 /* The largest allowable cell volume */
18c4762a1bSJed Brown   PetscBool     cellSimplex;                     /* Use simplices or hexes */
19c4762a1bSJed Brown   PetscBool     cellWedge;                       /* Use wedges */
20c4762a1bSJed Brown   DomainShape   domainShape;                     /* Shape of the region to be meshed */
21c4762a1bSJed Brown   PetscInt      *domainBoxSizes;                 /* Sizes of the box mesh */
22c4762a1bSJed Brown   PetscReal     *domainBoxL,*domainBoxU;         /* Lower left, upper right corner of the box mesh */
23c4762a1bSJed Brown   DMBoundaryType periodicity[3];                 /* The domain periodicity */
24c4762a1bSJed Brown   char          filename[PETSC_MAX_PATH_LEN];    /* Import mesh from file */
25c4762a1bSJed Brown   char          bdfilename[PETSC_MAX_PATH_LEN];  /* Import mesh boundary from file */
26c4762a1bSJed Brown   char          extfilename[PETSC_MAX_PATH_LEN]; /* Import 2D mesh to be extruded from file */
27c4762a1bSJed Brown   PetscBool     testPartition;                   /* Use a fixed partitioning for testing */
28c4762a1bSJed Brown   PetscInt      overlap;                         /* The cell overlap to use during partitioning */
29c4762a1bSJed Brown   PetscReal     extrude_thickness;               /* Thickness of extrusion */
30c4762a1bSJed Brown   PetscInt      extrude_layers;                  /* Layers to be extruded */
31*09c713e7SStefano Zampini   PetscBool     extrude_hfirst;                  /* New numbering: height first? */
32c4762a1bSJed Brown   PetscBool     testp4est[2];
33c4762a1bSJed Brown   PetscBool     redistribute;
34c4762a1bSJed Brown   PetscBool     final_ref;                       /* Run refinement at the end */
35c4762a1bSJed Brown   PetscBool     final_diagnostics;               /* Run diagnostics on the final mesh */
36c4762a1bSJed Brown } AppCtx;
37c4762a1bSJed Brown 
38c4762a1bSJed Brown PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options)
39c4762a1bSJed Brown {
40c4762a1bSJed Brown   const char       *dShapes[4] = {"box", "cylinder", "sphere", "ball"};
41c4762a1bSJed Brown   PetscInt         shape, bd, n;
42c4762a1bSJed Brown   static PetscInt  domainBoxSizes[3] = {1,1,1};
43c4762a1bSJed Brown   static PetscReal domainBoxL[3] = {0.,0.,0.};
44c4762a1bSJed Brown   static PetscReal domainBoxU[3] = {1.,1.,1.};
45c4762a1bSJed Brown   PetscBool        flg;
46c4762a1bSJed Brown   PetscErrorCode   ierr;
47c4762a1bSJed Brown 
48c4762a1bSJed Brown   PetscFunctionBegin;
49c4762a1bSJed Brown   options->debug             = 0;
50c4762a1bSJed Brown   options->dim               = 2;
51c4762a1bSJed Brown   options->interpolate       = PETSC_FALSE;
52c4762a1bSJed Brown   options->refinementLimit   = 0.0;
53c4762a1bSJed Brown   options->cellSimplex       = PETSC_TRUE;
54c4762a1bSJed Brown   options->cellWedge         = PETSC_FALSE;
55c4762a1bSJed Brown   options->domainShape       = BOX;
56c4762a1bSJed Brown   options->domainBoxSizes    = NULL;
57c4762a1bSJed Brown   options->domainBoxL        = NULL;
58c4762a1bSJed Brown   options->domainBoxU        = NULL;
59c4762a1bSJed Brown   options->periodicity[0]    = DM_BOUNDARY_NONE;
60c4762a1bSJed Brown   options->periodicity[1]    = DM_BOUNDARY_NONE;
61c4762a1bSJed Brown   options->periodicity[2]    = DM_BOUNDARY_NONE;
62c4762a1bSJed Brown   options->filename[0]       = '\0';
63c4762a1bSJed Brown   options->bdfilename[0]     = '\0';
64c4762a1bSJed Brown   options->extfilename[0]    = '\0';
65c4762a1bSJed Brown   options->testPartition     = PETSC_FALSE;
66c4762a1bSJed Brown   options->overlap           = 0;
67595782ffSMatthew G. Knepley   options->extrude_layers    = 0;
68c4762a1bSJed Brown   options->extrude_thickness = 0.1;
69*09c713e7SStefano Zampini   options->extrude_hfirst    = PETSC_TRUE;
70c4762a1bSJed Brown   options->testp4est[0]      = PETSC_FALSE;
71c4762a1bSJed Brown   options->testp4est[1]      = PETSC_FALSE;
72c4762a1bSJed Brown   options->redistribute      = PETSC_FALSE;
73c4762a1bSJed Brown   options->final_ref         = PETSC_FALSE;
74c4762a1bSJed Brown   options->final_diagnostics = PETSC_TRUE;
75c4762a1bSJed Brown 
76c4762a1bSJed Brown   ierr = PetscOptionsBegin(comm, "", "Meshing Problem Options", "DMPLEX");CHKERRQ(ierr);
77c4762a1bSJed Brown   ierr = PetscOptionsBoundedInt("-debug", "The debugging level", "ex1.c", options->debug, &options->debug, NULL,0);CHKERRQ(ierr);
78c4762a1bSJed Brown   ierr = PetscOptionsRangeInt("-dim", "The topological mesh dimension", "ex1.c", options->dim, &options->dim, NULL,1,3);CHKERRQ(ierr);
79c4762a1bSJed Brown   ierr = PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex1.c", options->interpolate, &options->interpolate, NULL);CHKERRQ(ierr);
80c4762a1bSJed Brown   ierr = PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex1.c", options->refinementLimit, &options->refinementLimit, NULL);CHKERRQ(ierr);
81c4762a1bSJed Brown   ierr = PetscOptionsBool("-cell_simplex", "Use simplices if true, otherwise hexes", "ex1.c", options->cellSimplex, &options->cellSimplex, NULL);CHKERRQ(ierr);
82c4762a1bSJed Brown   ierr = PetscOptionsBool("-cell_wedge", "Use wedges if true", "ex1.c", options->cellWedge, &options->cellWedge, NULL);CHKERRQ(ierr);
83c4762a1bSJed Brown   shape = options->domainShape;
84c4762a1bSJed Brown   ierr = PetscOptionsEList("-domain_shape","The shape of the domain","ex1.c", dShapes, 4, dShapes[options->domainShape], &shape, NULL);CHKERRQ(ierr);
85c4762a1bSJed Brown   options->domainShape = (DomainShape) shape;
86c4762a1bSJed Brown   ierr = PetscOptionsIntArray("-domain_box_sizes","The sizes of the box domain","ex1.c", domainBoxSizes, (n=3,&n), &flg);CHKERRQ(ierr);
87c4762a1bSJed Brown   if (flg) { options->domainShape = BOX; options->domainBoxSizes = domainBoxSizes;}
88c4762a1bSJed Brown   ierr = PetscOptionsRealArray("-domain_box_ll","Coordinates of the lower left corner of the box domain","ex1.c", domainBoxL, (n=3,&n), &flg);CHKERRQ(ierr);
89c4762a1bSJed Brown   if (flg) { options->domainBoxL = domainBoxL;}
90c4762a1bSJed Brown   ierr = PetscOptionsRealArray("-domain_box_ur","Coordinates of the upper right corner of the box domain","ex1.c", domainBoxU, (n=3,&n), &flg);CHKERRQ(ierr);
91c4762a1bSJed Brown   if (flg) { options->domainBoxU = domainBoxU;}
92c4762a1bSJed Brown   bd = options->periodicity[0];
93c4762a1bSJed Brown   ierr = PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);CHKERRQ(ierr);
94c4762a1bSJed Brown   options->periodicity[0] = (DMBoundaryType) bd;
95c4762a1bSJed Brown   bd = options->periodicity[1];
96c4762a1bSJed Brown   ierr = PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);CHKERRQ(ierr);
97c4762a1bSJed Brown   options->periodicity[1] = (DMBoundaryType) bd;
98c4762a1bSJed Brown   bd = options->periodicity[2];
99c4762a1bSJed Brown   ierr = PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);CHKERRQ(ierr);
100c4762a1bSJed Brown   options->periodicity[2] = (DMBoundaryType) bd;
101c4762a1bSJed Brown   ierr = PetscOptionsString("-filename", "The mesh file", "ex1.c", options->filename, options->filename, PETSC_MAX_PATH_LEN, NULL);CHKERRQ(ierr);
102589a23caSBarry Smith   ierr = PetscOptionsString("-bd_filename", "The mesh boundary file", "ex1.c", options->bdfilename, options->bdfilename, sizeof(options->bdfilename), NULL);CHKERRQ(ierr);
103589a23caSBarry Smith   ierr = PetscOptionsString("-ext_filename", "The 2D mesh file to be extruded", "ex1.c", options->extfilename, options->extfilename, sizeof(options->extfilename), &flg);CHKERRQ(ierr);
104595782ffSMatthew G. Knepley   if (flg) options->extrude_layers = 2;
105c4762a1bSJed Brown   ierr = PetscOptionsBoundedInt("-ext_layers", "The number of layers to extrude", "ex1.c", options->extrude_layers, &options->extrude_layers, NULL,0);CHKERRQ(ierr);
106c4762a1bSJed Brown   ierr = PetscOptionsReal("-ext_thickness", "The thickness of the layer to be extruded", "ex1.c", options->extrude_thickness, &options->extrude_thickness, NULL);CHKERRQ(ierr);
107*09c713e7SStefano Zampini   ierr = PetscOptionsBool("-ext_hfirst", "Order the cells in the height first", "ex1.c", options->extrude_hfirst, &options->extrude_hfirst, NULL);CHKERRQ(ierr);
108c4762a1bSJed Brown   ierr = PetscOptionsBool("-test_partition", "Use a fixed partition for testing", "ex1.c", options->testPartition, &options->testPartition, NULL);CHKERRQ(ierr);
109c4762a1bSJed Brown   ierr = PetscOptionsBoundedInt("-overlap", "The cell overlap for partitioning", "ex1.c", options->overlap, &options->overlap, NULL,0);CHKERRQ(ierr);
110c4762a1bSJed Brown   ierr = PetscOptionsBool("-test_p4est_seq", "Test p4est with sequential base DM", "ex1.c", options->testp4est[0], &options->testp4est[0], NULL);CHKERRQ(ierr);
111c4762a1bSJed Brown   ierr = PetscOptionsBool("-test_p4est_par", "Test p4est with parallel base DM", "ex1.c", options->testp4est[1], &options->testp4est[1], NULL);CHKERRQ(ierr);
112c4762a1bSJed Brown   ierr = PetscOptionsBool("-test_redistribute", "Test redistribution", "ex1.c", options->redistribute, &options->redistribute, NULL);CHKERRQ(ierr);
113c4762a1bSJed Brown   ierr = PetscOptionsBool("-final_ref", "Run uniform refinement on the final mesh", "ex1.c", options->final_ref, &options->final_ref, NULL);CHKERRQ(ierr);
114c4762a1bSJed Brown   ierr = PetscOptionsBool("-final_diagnostics", "Run diagnostics on the final mesh", "ex1.c", options->final_diagnostics, &options->final_diagnostics, NULL);CHKERRQ(ierr);
115c4762a1bSJed Brown   ierr = PetscOptionsEnd();
116c4762a1bSJed Brown 
117c4762a1bSJed Brown   ierr = PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);CHKERRQ(ierr);
118c4762a1bSJed Brown   ierr = PetscLogStageRegister("MeshLoad",       &options->stages[STAGE_LOAD]);CHKERRQ(ierr);
119c4762a1bSJed Brown   ierr = PetscLogStageRegister("MeshDistribute", &options->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr);
120c4762a1bSJed Brown   ierr = PetscLogStageRegister("MeshRefine",     &options->stages[STAGE_REFINE]);CHKERRQ(ierr);
121c4762a1bSJed Brown   ierr = PetscLogStageRegister("MeshOverlap",    &options->stages[STAGE_OVERLAP]);CHKERRQ(ierr);
122c4762a1bSJed Brown   PetscFunctionReturn(0);
123c4762a1bSJed Brown }
124c4762a1bSJed Brown 
125c4762a1bSJed Brown /* Overload time to be the sphere radius */
126c4762a1bSJed Brown static void snapToSphere(PetscInt dim, PetscInt Nf, PetscInt NfAux,
127c4762a1bSJed Brown                          const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
128c4762a1bSJed Brown                          const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
129c4762a1bSJed Brown                          PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[])
130c4762a1bSJed Brown {
131c4762a1bSJed Brown   PetscReal norm2 = 0.0, fac;
132c4762a1bSJed Brown   PetscInt  n = uOff[1] - uOff[0], d;
133c4762a1bSJed Brown 
134c4762a1bSJed Brown   for (d = 0; d < n; ++d) norm2 += PetscSqr(PetscRealPart(u[d]));
135c4762a1bSJed Brown   fac = t/PetscSqrtReal(norm2);
136c4762a1bSJed Brown   for (d = 0; d < n; ++d) f0[d] = u[d]*fac;
137c4762a1bSJed Brown }
138c4762a1bSJed Brown 
139c4762a1bSJed Brown PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm)
140c4762a1bSJed Brown {
141c4762a1bSJed Brown   PetscInt       dim                  = user->dim;
142c4762a1bSJed Brown   PetscBool      interpolate          = user->interpolate;
143c4762a1bSJed Brown   PetscReal      refinementLimit      = user->refinementLimit;
144c4762a1bSJed Brown   PetscBool      cellSimplex          = user->cellSimplex;
145c4762a1bSJed Brown   PetscBool      cellWedge            = user->cellWedge;
146c4762a1bSJed Brown   const char    *filename             = user->filename;
147c4762a1bSJed Brown   const char    *bdfilename           = user->bdfilename;
148c4762a1bSJed Brown   const char    *extfilename          = user->extfilename;
149c4762a1bSJed Brown   PetscBool      testp4est_seq        = user->testp4est[0];
150c4762a1bSJed Brown   PetscBool      testp4est_par        = user->testp4est[1];
151c4762a1bSJed Brown   PetscInt       triSizes_n2[2]       = {4, 4};
152c4762a1bSJed Brown   PetscInt       triPoints_n2[8]      = {3, 5, 6, 7, 0, 1, 2, 4};
153c4762a1bSJed Brown   PetscInt       triSizes_n8[8]       = {1, 1, 1, 1, 1, 1, 1, 1};
154c4762a1bSJed Brown   PetscInt       triPoints_n8[8]      = {0, 1, 2, 3, 4, 5, 6, 7};
155c4762a1bSJed Brown   PetscInt       quadSizes[2]         = {2, 2};
156c4762a1bSJed Brown   PetscInt       quadPoints[4]        = {2, 3, 0, 1};
157c4762a1bSJed Brown   PetscInt       gmshSizes_n3[3]      = {14, 14, 14};
158c4762a1bSJed Brown   PetscInt       gmshPoints_n3[42]    = {1, 2,  4,  5,  9, 10, 11, 15, 16, 20, 21, 27, 28, 29,
159c4762a1bSJed Brown                                          3, 8, 12, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40,
160c4762a1bSJed Brown                                          0, 6,  7, 13, 14, 17, 18, 19, 22, 23, 24, 25, 26, 41};
161c4762a1bSJed Brown   PetscInt       fluentSizes_n3[3]    = {50, 50, 50};
162c4762a1bSJed Brown   PetscInt       fluentPoints_n3[150] = { 5,  6,  7,  8, 12, 14, 16,  34,  36,  37,  38,  39,  40,  41,  42,  43,  44,  45,  46,  48,  50,  51,  80,  81,  89,
163c4762a1bSJed Brown                                          91, 93, 94, 95, 96, 97, 98,  99, 100, 101, 104, 121, 122, 124, 125, 126, 127, 128, 129, 131, 133, 143, 144, 145, 147,
164c4762a1bSJed Brown                                           1,  3,  4,  9, 10, 17, 18,  19,  24,  25,  26,  27,  28,  29,  30,  31,  32,  33,  35,  47,  61,  71,  72,  73,  74,
165c4762a1bSJed Brown                                          75, 76, 77, 78, 79, 86, 87,  88,  90,  92, 113, 115, 116, 117, 118, 119, 120, 123, 138, 140, 141, 142, 146, 148, 149,
166c4762a1bSJed Brown                                           0,  2, 11, 13, 15, 20, 21,  22,  23,  49,  52,  53,  54,  55,  56,  57,  58,  59,  60,  62,  63,  64,  65,  66,  67,
167c4762a1bSJed Brown                                          68, 69, 70, 82, 83, 84, 85, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 114, 130, 132, 134, 135, 136, 137, 139};
168c4762a1bSJed Brown   size_t         len, bdlen, extlen;
169c4762a1bSJed Brown   PetscMPIInt    rank, size;
170c4762a1bSJed Brown   PetscErrorCode ierr;
171c4762a1bSJed Brown 
172c4762a1bSJed Brown   PetscFunctionBegin;
173c4762a1bSJed Brown   ierr = PetscLogEventBegin(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
174c4762a1bSJed Brown   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
175c4762a1bSJed Brown   ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
176c4762a1bSJed Brown   ierr = PetscStrlen(filename, &len);CHKERRQ(ierr);
177c4762a1bSJed Brown   ierr = PetscStrlen(bdfilename, &bdlen);CHKERRQ(ierr);
178c4762a1bSJed Brown   ierr = PetscStrlen(extfilename, &extlen);CHKERRQ(ierr);
179c4762a1bSJed Brown   ierr = PetscLogStagePush(user->stages[STAGE_LOAD]);CHKERRQ(ierr);
180c4762a1bSJed Brown   if (len) {
181c4762a1bSJed Brown     ierr = DMPlexCreateFromFile(comm, filename, interpolate, dm);CHKERRQ(ierr);
182c4762a1bSJed Brown   } else if (bdlen) {
183c4762a1bSJed Brown     DM boundary;
184c4762a1bSJed Brown 
185c4762a1bSJed Brown     ierr = DMPlexCreateFromFile(comm, bdfilename, interpolate, &boundary);CHKERRQ(ierr);
186c4762a1bSJed Brown     ierr = DMPlexGenerate(boundary, NULL, interpolate, dm);CHKERRQ(ierr);
187c4762a1bSJed Brown     ierr = DMDestroy(&boundary);CHKERRQ(ierr);
188c4762a1bSJed Brown   } else if (extlen) {
189c4762a1bSJed Brown     DM edm;
190c4762a1bSJed Brown 
191c4762a1bSJed Brown     ierr = DMPlexCreateFromFile(comm, extfilename, interpolate, &edm);CHKERRQ(ierr);
192*09c713e7SStefano Zampini     ierr = DMPlexExtrude(edm, user->extrude_layers, user->extrude_thickness, user->extrude_hfirst, interpolate, dm);CHKERRQ(ierr);
193c4762a1bSJed Brown     ierr = DMDestroy(&edm);CHKERRQ(ierr);
194c4762a1bSJed Brown   } else {
195c4762a1bSJed Brown     switch (user->domainShape) {
196c4762a1bSJed Brown     case BOX:
197c4762a1bSJed Brown       if (cellWedge) {
198c4762a1bSJed Brown         if (dim != 3) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a wedge mesh, not %D", dim);
199c4762a1bSJed Brown         ierr = DMPlexCreateWedgeBoxMesh(comm, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, PETSC_FALSE, interpolate, dm);CHKERRQ(ierr);
200c4762a1bSJed Brown       } else {
201c4762a1bSJed Brown         ierr = DMPlexCreateBoxMesh(comm, dim, cellSimplex, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, interpolate, dm);CHKERRQ(ierr);
202c4762a1bSJed Brown       }
203c4762a1bSJed Brown       break;
204c4762a1bSJed Brown     case CYLINDER:
205c4762a1bSJed Brown       if (cellSimplex) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Cannot mesh a cylinder with simplices");
206c4762a1bSJed Brown       if (dim != 3)    SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a cylinder mesh, not %D", dim);
207c4762a1bSJed Brown       if (cellWedge) {
208c4762a1bSJed Brown         ierr = DMPlexCreateWedgeCylinderMesh(comm, 6, interpolate, dm);CHKERRQ(ierr);
209c4762a1bSJed Brown       } else {
21054fcfd0cSMatthew G. Knepley         ierr = DMPlexCreateHexCylinderMesh(comm, 1, user->periodicity[2], dm);CHKERRQ(ierr);
211c4762a1bSJed Brown       }
212c4762a1bSJed Brown       break;
213c4762a1bSJed Brown     case SPHERE:
214c4762a1bSJed Brown       ierr = DMPlexCreateSphereMesh(comm, dim, cellSimplex, dm);CHKERRQ(ierr);
215c4762a1bSJed Brown       break;
216c4762a1bSJed Brown     case BALL:
217c4762a1bSJed Brown       {
218c4762a1bSJed Brown         DM       sdm;
219c4762a1bSJed Brown         PetscInt Nr = 0, r;
220c4762a1bSJed Brown 
221c4762a1bSJed Brown         ierr = DMPlexCreateSphereMesh(comm, dim-1, cellSimplex, &sdm);CHKERRQ(ierr);
222c4762a1bSJed Brown         {
223c4762a1bSJed Brown           DM       cdm;
224c4762a1bSJed Brown           PetscFE  fe;
225c4762a1bSJed Brown           PetscInt dim, dE;
226c4762a1bSJed Brown 
227c4762a1bSJed Brown           ierr = DMGetCoordinateDM(sdm, &cdm);CHKERRQ(ierr);
228c4762a1bSJed Brown           ierr = DMGetDimension(sdm, &dim);CHKERRQ(ierr);
229c4762a1bSJed Brown           ierr = DMGetCoordinateDim(sdm, &dE);CHKERRQ(ierr);
230c4762a1bSJed Brown           ierr = PetscFECreateLagrange(PETSC_COMM_SELF, dim, dE, PETSC_TRUE, 1, -1, &fe);CHKERRQ(ierr);
231c4762a1bSJed Brown           ierr = DMSetField(cdm, 0, NULL, (PetscObject) fe);CHKERRQ(ierr);
232c4762a1bSJed Brown           ierr = PetscFEDestroy(&fe);CHKERRQ(ierr);
233c4762a1bSJed Brown           ierr = DMCreateDS(cdm);CHKERRQ(ierr);
234c4762a1bSJed Brown         }
235c4762a1bSJed Brown         ierr = PetscOptionsGetInt(NULL, "bd_", "-dm_refine", &Nr, NULL);CHKERRQ(ierr);
236c4762a1bSJed Brown         for (r = 0; r < Nr; ++r) {
237c4762a1bSJed Brown           DM rdm, cdm, rcdm;
238c4762a1bSJed Brown           ierr = DMRefine(sdm, PETSC_COMM_WORLD, &rdm);CHKERRQ(ierr);
239c4762a1bSJed Brown           ierr = DMGetCoordinateDM(sdm, &cdm);CHKERRQ(ierr);
240c4762a1bSJed Brown           ierr = DMGetCoordinateDM(rdm, &rcdm);CHKERRQ(ierr);
241c4762a1bSJed Brown           ierr = DMCopyDisc(cdm, rcdm);CHKERRQ(ierr);
242c4762a1bSJed Brown           ierr = DMPlexRemapGeometry(rdm, 1.0, snapToSphere);CHKERRQ(ierr);
243c4762a1bSJed Brown           ierr = DMDestroy(&sdm);CHKERRQ(ierr);
244c4762a1bSJed Brown           sdm  = rdm;
245c4762a1bSJed Brown         }
246c4762a1bSJed Brown         ierr = DMPlexGenerate(sdm, NULL, interpolate, dm);CHKERRQ(ierr);
247c4762a1bSJed Brown         ierr = DMDestroy(&sdm);CHKERRQ(ierr);
248c4762a1bSJed Brown       }
249c4762a1bSJed Brown       break;
250c4762a1bSJed Brown     default: SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Unknown domain shape %D", user->domainShape);
251c4762a1bSJed Brown     }
252c4762a1bSJed Brown   }
253595782ffSMatthew G. Knepley   if (!extlen && user->extrude_layers > 0) {
254595782ffSMatthew G. Knepley     DM edm;
255595782ffSMatthew G. Knepley 
256*09c713e7SStefano Zampini     ierr = DMPlexExtrude(*dm, user->extrude_layers, user->extrude_thickness, user->extrude_hfirst, interpolate, &edm);CHKERRQ(ierr);
257595782ffSMatthew G. Knepley     ierr = DMDestroy(dm);CHKERRQ(ierr);
258595782ffSMatthew G. Knepley     *dm  = edm;
259595782ffSMatthew G. Knepley   }
260c4762a1bSJed Brown   ierr = DMLocalizeCoordinates(*dm);CHKERRQ(ierr); /* needed for periodic */
261c4762a1bSJed Brown   ierr = DMViewFromOptions(*dm,NULL,"-init_dm_view");CHKERRQ(ierr);
262c4762a1bSJed Brown   ierr = DMGetDimension(*dm,&dim);CHKERRQ(ierr);
263c4762a1bSJed Brown 
264c4762a1bSJed Brown   if (testp4est_seq) {
265c4762a1bSJed Brown #if defined(PETSC_HAVE_P4EST)
266c4762a1bSJed Brown     DM dmConv = NULL;
267c4762a1bSJed Brown 
26854fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
26954fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
27054fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
27154fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
27254fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
27354fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);
274c4762a1bSJed Brown     ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
27596ca5757SLisandro Dalcin     ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr);
27654fcfd0cSMatthew G. Knepley     ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr);
277c4762a1bSJed Brown     if (dmConv) {
278c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
279c4762a1bSJed Brown       *dm  = dmConv;
280c4762a1bSJed Brown     }
28154fcfd0cSMatthew G. Knepley     ierr = DMViewFromOptions(*dm,NULL,"-initref_dm_view");CHKERRQ(ierr);
28254fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
28354fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
28454fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
28554fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
28654fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
28754fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);
288c4762a1bSJed Brown     user->cellSimplex = PETSC_FALSE;
289c4762a1bSJed Brown 
290c4762a1bSJed Brown     ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr);
291c4762a1bSJed Brown     if (dmConv) {
292c4762a1bSJed Brown       ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_1_");CHKERRQ(ierr);
293c4762a1bSJed Brown       ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
294c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
295c4762a1bSJed Brown       *dm  = dmConv;
296c4762a1bSJed Brown     }
297c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_1_");CHKERRQ(ierr);
298c4762a1bSJed Brown     ierr = DMSetUp(*dm);CHKERRQ(ierr);
299c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
300c4762a1bSJed Brown     ierr = DMConvert(*dm,DMPLEX,&dmConv);CHKERRQ(ierr);
301c4762a1bSJed Brown     if (dmConv) {
302c4762a1bSJed Brown       ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_2_");CHKERRQ(ierr);
303c4762a1bSJed Brown       ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
304c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
305c4762a1bSJed Brown       *dm  = dmConv;
306c4762a1bSJed Brown     }
307c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_2_");CHKERRQ(ierr);
308c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
309c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr);
310c4762a1bSJed Brown #else
311c4762a1bSJed Brown     SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est");
312c4762a1bSJed Brown #endif
313c4762a1bSJed Brown   }
314c4762a1bSJed Brown 
315c4762a1bSJed Brown   ierr = PetscLogStagePop();CHKERRQ(ierr);
316c4762a1bSJed Brown   if (!testp4est_seq) {
317c4762a1bSJed Brown     DM refinedMesh     = NULL;
318c4762a1bSJed Brown     DM distributedMesh = NULL;
319c4762a1bSJed Brown 
320c4762a1bSJed Brown     if (user->testPartition) {
321c4762a1bSJed Brown       const PetscInt  *sizes = NULL;
322c4762a1bSJed Brown       const PetscInt  *points = NULL;
323c4762a1bSJed Brown       PetscPartitioner part;
324c4762a1bSJed Brown 
325c4762a1bSJed Brown       if (!rank) {
326c4762a1bSJed Brown         if (dim == 2 && cellSimplex && size == 2) {
327c4762a1bSJed Brown            sizes = triSizes_n2; points = triPoints_n2;
328c4762a1bSJed Brown         } else if (dim == 2 && cellSimplex && size == 8) {
329c4762a1bSJed Brown           sizes = triSizes_n8; points = triPoints_n8;
330c4762a1bSJed Brown         } else if (dim == 2 && !cellSimplex && size == 2) {
331c4762a1bSJed Brown           sizes = quadSizes; points = quadPoints;
332c4762a1bSJed Brown         } else if (dim == 2 && size == 3) {
333c4762a1bSJed Brown           PetscInt Nc;
334c4762a1bSJed Brown 
335c4762a1bSJed Brown           ierr = DMPlexGetHeightStratum(*dm, 0, NULL, &Nc);CHKERRQ(ierr);
336c4762a1bSJed Brown           if (Nc == 42) { /* Gmsh 3 & 4 */
337c4762a1bSJed Brown             sizes = gmshSizes_n3; points = gmshPoints_n3;
338c4762a1bSJed Brown           } else if (Nc == 150) { /* Fluent 1 */
339c4762a1bSJed Brown             sizes = fluentSizes_n3; points = fluentPoints_n3;
340c4762a1bSJed Brown           } else if (Nc == 42) { /* Med 1 */
341c4762a1bSJed Brown           } else if (Nc == 161) { /* Med 3 */
342c4762a1bSJed Brown           }
343c4762a1bSJed Brown         }
344c4762a1bSJed Brown       }
345c4762a1bSJed Brown       ierr = DMPlexGetPartitioner(*dm, &part);CHKERRQ(ierr);
346c4762a1bSJed Brown       ierr = PetscPartitionerSetType(part, PETSCPARTITIONERSHELL);CHKERRQ(ierr);
347c4762a1bSJed Brown       ierr = PetscPartitionerShellSetPartition(part, size, sizes, points);CHKERRQ(ierr);
348c4762a1bSJed Brown     } else {
349c4762a1bSJed Brown       PetscPartitioner part;
350c4762a1bSJed Brown 
351c4762a1bSJed Brown       ierr = DMPlexGetPartitioner(*dm,&part);CHKERRQ(ierr);
352c4762a1bSJed Brown       ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr);
353c4762a1bSJed Brown     }
354c4762a1bSJed Brown     /* Distribute mesh over processes */
355c4762a1bSJed Brown     ierr = PetscLogStagePush(user->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr);
356c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_dist_view");CHKERRQ(ierr);
357c4762a1bSJed Brown     ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr);
358c4762a1bSJed Brown     if (distributedMesh) {
359c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
360c4762a1bSJed Brown       *dm  = distributedMesh;
361c4762a1bSJed Brown     }
362c4762a1bSJed Brown     ierr = PetscLogStagePop();CHKERRQ(ierr);
363c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-distributed_dm_view");CHKERRQ(ierr);
364c4762a1bSJed Brown     /* Refine mesh using a volume constraint */
365c4762a1bSJed Brown     ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr);
366c4762a1bSJed Brown     ierr = DMPlexSetRefinementUniform(*dm, PETSC_FALSE);CHKERRQ(ierr);
367c4762a1bSJed Brown     ierr = DMPlexSetRefinementLimit(*dm, refinementLimit);CHKERRQ(ierr);
368c4762a1bSJed Brown     ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr);
369c4762a1bSJed Brown     if (refinedMesh) {
370c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
371c4762a1bSJed Brown       *dm  = refinedMesh;
372c4762a1bSJed Brown     }
373c4762a1bSJed Brown     ierr = PetscLogStagePop();CHKERRQ(ierr);
374c4762a1bSJed Brown   }
375c4762a1bSJed Brown   ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr);
376c4762a1bSJed Brown   ierr = DMSetFromOptions(*dm);CHKERRQ(ierr);
377c4762a1bSJed Brown   ierr = PetscLogStagePop();CHKERRQ(ierr);
378c4762a1bSJed Brown 
379c4762a1bSJed Brown   if (testp4est_par) {
380c4762a1bSJed Brown #if defined(PETSC_HAVE_P4EST)
381c4762a1bSJed Brown     DM dmConv = NULL;
382c4762a1bSJed Brown 
38396ca5757SLisandro Dalcin     ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr);
384c4762a1bSJed Brown     ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
38596ca5757SLisandro Dalcin     ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr);
38654fcfd0cSMatthew G. Knepley     ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr);
387c4762a1bSJed Brown     if (dmConv) {
388c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
389c4762a1bSJed Brown       *dm  = dmConv;
390c4762a1bSJed Brown     }
391c4762a1bSJed Brown     user->cellSimplex = PETSC_FALSE;
39296ca5757SLisandro Dalcin     ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr);
39354fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
39454fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
39554fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
39654fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
39754fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
39854fcfd0cSMatthew G. Knepley     ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);
399c4762a1bSJed Brown 
400c4762a1bSJed Brown     ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr);
401c4762a1bSJed Brown     if (dmConv) {
402c4762a1bSJed Brown       ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_1_");CHKERRQ(ierr);
403c4762a1bSJed Brown       ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
404c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
405c4762a1bSJed Brown       *dm  = dmConv;
406c4762a1bSJed Brown     }
407c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_1_");CHKERRQ(ierr);
408c4762a1bSJed Brown     ierr = DMSetUp(*dm);CHKERRQ(ierr);
409c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
410c4762a1bSJed Brown     ierr = DMConvert(*dm, DMPLEX, &dmConv);CHKERRQ(ierr);
411c4762a1bSJed Brown     if (dmConv) {
412c4762a1bSJed Brown       ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_2_");CHKERRQ(ierr);
413c4762a1bSJed Brown       ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
414c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
415c4762a1bSJed Brown       *dm  = dmConv;
416c4762a1bSJed Brown     }
417c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_2_");CHKERRQ(ierr);
418c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
419c4762a1bSJed Brown     ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr);
420c4762a1bSJed Brown #else
421c4762a1bSJed Brown     SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est");
422c4762a1bSJed Brown #endif
423c4762a1bSJed Brown   }
424c4762a1bSJed Brown 
425c4762a1bSJed Brown   /* test redistribution of an already distributed mesh */
426c4762a1bSJed Brown   if (user->redistribute) {
427c4762a1bSJed Brown     DM       distributedMesh;
4280a19bb7dSprj-     PetscSF  sf;
4290a19bb7dSprj-     PetscInt nranks;
430c4762a1bSJed Brown 
431c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_redist_view");CHKERRQ(ierr);
432c4762a1bSJed Brown     ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr);
433c4762a1bSJed Brown     if (distributedMesh) {
4340a19bb7dSprj-       ierr = DMGetPointSF(distributedMesh, &sf);CHKERRQ(ierr);
4350a19bb7dSprj-       ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
4360a19bb7dSprj-       ierr = DMGetNeighbors(distributedMesh, &nranks, NULL);CHKERRQ(ierr);
4370a19bb7dSprj-       ierr = MPI_Allreduce(MPI_IN_PLACE, &nranks, 1, MPIU_INT, MPI_MIN, PetscObjectComm((PetscObject)*dm));CHKERRQ(ierr);
4380a19bb7dSprj-       ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)*dm)), "Minimum number of neighbors: %D\n", nranks);CHKERRQ(ierr);
439c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
440c4762a1bSJed Brown       *dm  = distributedMesh;
441c4762a1bSJed Brown     }
442c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_post_redist_view");CHKERRQ(ierr);
443c4762a1bSJed Brown   }
444c4762a1bSJed Brown 
445c4762a1bSJed Brown   if (user->overlap) {
446c4762a1bSJed Brown     DM overlapMesh = NULL;
447c4762a1bSJed Brown 
448c4762a1bSJed Brown     /* Add the overlap to refined mesh */
449c4762a1bSJed Brown     ierr = PetscLogStagePush(user->stages[STAGE_OVERLAP]);CHKERRQ(ierr);
450c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_overlap_view");CHKERRQ(ierr);
451c4762a1bSJed Brown     ierr = DMPlexDistributeOverlap(*dm, user->overlap, NULL, &overlapMesh);CHKERRQ(ierr);
452c4762a1bSJed Brown     if (overlapMesh) {
453c4762a1bSJed Brown       PetscInt overlap;
454c4762a1bSJed Brown       ierr = DMPlexGetOverlap(overlapMesh, &overlap);CHKERRQ(ierr);
455c4762a1bSJed Brown       ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "Overlap: %D\n", overlap);CHKERRQ(ierr);
456c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
457c4762a1bSJed Brown       *dm = overlapMesh;
458c4762a1bSJed Brown     }
459c4762a1bSJed Brown     ierr = DMViewFromOptions(*dm, NULL, "-dm_post_overlap_view");CHKERRQ(ierr);
460c4762a1bSJed Brown     ierr = PetscLogStagePop();CHKERRQ(ierr);
461c4762a1bSJed Brown   }
462c4762a1bSJed Brown   if (user->final_ref) {
463c4762a1bSJed Brown     DM refinedMesh = NULL;
464c4762a1bSJed Brown 
465c4762a1bSJed Brown     ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
466c4762a1bSJed Brown     ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr);
467c4762a1bSJed Brown     if (refinedMesh) {
468c4762a1bSJed Brown       ierr = DMDestroy(dm);CHKERRQ(ierr);
469c4762a1bSJed Brown       *dm  = refinedMesh;
470c4762a1bSJed Brown     }
471c4762a1bSJed Brown   }
472c4762a1bSJed Brown 
473c4762a1bSJed Brown   ierr = PetscObjectSetName((PetscObject) *dm, "Simplicial Mesh");CHKERRQ(ierr);
474c4762a1bSJed Brown   ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
475c4762a1bSJed Brown   if (user->final_diagnostics) {
476c4762a1bSJed Brown     DMPlexInterpolatedFlag interpolated;
477c4762a1bSJed Brown     PetscInt  dim, depth;
478c4762a1bSJed Brown 
479c4762a1bSJed Brown     ierr = DMGetDimension(*dm, &dim);CHKERRQ(ierr);
480c4762a1bSJed Brown     ierr = DMPlexGetDepth(*dm, &depth);CHKERRQ(ierr);
481c4762a1bSJed Brown     ierr = DMPlexIsInterpolatedCollective(*dm, &interpolated);CHKERRQ(ierr);
482c4762a1bSJed Brown 
483c4762a1bSJed Brown     ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
484c4762a1bSJed Brown     if (interpolated == DMPLEX_INTERPOLATED_FULL) {
485c4762a1bSJed Brown       ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
486c4762a1bSJed Brown     }
487c4762a1bSJed Brown     ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
488c4762a1bSJed Brown     ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
489c4762a1bSJed Brown   }
490c4762a1bSJed Brown   ierr = PetscLogEventEnd(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
491c4762a1bSJed Brown   user->dm = *dm;
492c4762a1bSJed Brown   PetscFunctionReturn(0);
493c4762a1bSJed Brown }
494c4762a1bSJed Brown 
495c4762a1bSJed Brown int main(int argc, char **argv)
496c4762a1bSJed Brown {
497c4762a1bSJed Brown   AppCtx         user;                 /* user-defined work context */
498c4762a1bSJed Brown   PetscErrorCode ierr;
499c4762a1bSJed Brown 
500c4762a1bSJed Brown   ierr = PetscInitialize(&argc, &argv, NULL, help);if (ierr) return ierr;
501c4762a1bSJed Brown   ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr);
502c4762a1bSJed Brown   ierr = CreateMesh(PETSC_COMM_WORLD, &user, &user.dm);CHKERRQ(ierr);
503c4762a1bSJed Brown   ierr = DMDestroy(&user.dm);CHKERRQ(ierr);
504c4762a1bSJed Brown   ierr = PetscFinalize();
505c4762a1bSJed Brown   return ierr;
506c4762a1bSJed Brown }
507c4762a1bSJed Brown 
508c4762a1bSJed Brown /*TEST
509c4762a1bSJed Brown 
510c4762a1bSJed Brown   # CTetGen 0-1
511c4762a1bSJed Brown   test:
512c4762a1bSJed Brown     suffix: 0
513c4762a1bSJed Brown     requires: ctetgen
514c20d7725SJed Brown     args: -dim 3 -ctetgen_verbose 4 -dm_view ascii::ascii_info_detail -info :~sys
515c4762a1bSJed Brown   test:
516c4762a1bSJed Brown     suffix: 1
517c4762a1bSJed Brown     requires: ctetgen
518c20d7725SJed Brown     args: -dim 3 -ctetgen_verbose 4 -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail -info :~sys
519c20d7725SJed Brown 
520c4762a1bSJed Brown 
521c4762a1bSJed Brown   # 2D LaTex and ASCII output 2-9
522c4762a1bSJed Brown   test:
523c4762a1bSJed Brown     suffix: 2
524c4762a1bSJed Brown     requires: triangle
525c4762a1bSJed Brown     args: -dim 2 -dm_view ascii::ascii_latex
526c4762a1bSJed Brown   test:
527c4762a1bSJed Brown     suffix: 3
528c4762a1bSJed Brown     requires: triangle
529c4762a1bSJed Brown     args: -dim 2 -dm_refine 1 -interpolate 1 -dm_view ascii::ascii_info_detail
530c4762a1bSJed Brown   test:
531c4762a1bSJed Brown     suffix: 4
532c4762a1bSJed Brown     requires: triangle
533c4762a1bSJed Brown     nsize: 2
534c4762a1bSJed Brown     args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_info_detail
535c4762a1bSJed Brown   test:
536c4762a1bSJed Brown     suffix: 5
537c4762a1bSJed Brown     requires: triangle
538c4762a1bSJed Brown     nsize: 2
539c4762a1bSJed Brown     args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex
540c4762a1bSJed Brown   test:
541c4762a1bSJed Brown     suffix: 6
542c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -dm_view ascii::ascii_info_detail
543c4762a1bSJed Brown   test:
544c4762a1bSJed Brown     suffix: 7
545c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -dm_view ascii::ascii_info_detail
546c4762a1bSJed Brown   test:
547c4762a1bSJed Brown     suffix: 8
548c4762a1bSJed Brown     nsize: 2
549c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex
550c4762a1bSJed Brown 
551c4762a1bSJed Brown   # 1D ASCII output
552c4762a1bSJed Brown   test:
553c4762a1bSJed Brown     suffix: 1d_0
554c4762a1bSJed Brown     args: -dim 1 -domain_shape box -dm_view ascii::ascii_info_detail
555c4762a1bSJed Brown   test:
556c4762a1bSJed Brown     suffix: 1d_1
557c4762a1bSJed Brown     args: -dim 1 -domain_shape box -dm_refine 2 -dm_view ascii::ascii_info_detail
558c4762a1bSJed Brown   test:
559c4762a1bSJed Brown     suffix: 1d_2
56054fcfd0cSMatthew G. Knepley     args: -dim 1 -domain_box_sizes 5 -x_periodicity periodic -dm_view ascii::ascii_info_detail -dm_plex_check_all
561c4762a1bSJed Brown 
562c4762a1bSJed Brown   # Parallel refinement tests with overlap
563c4762a1bSJed Brown   test:
564c4762a1bSJed Brown     suffix: refine_overlap_1d
565c4762a1bSJed Brown     nsize: 2
566c4762a1bSJed Brown     args: -dim 1 -domain_box_sizes 4 -dm_refine 1 -overlap {{0 1 2}separate output} -petscpartitioner_type simple -dm_view ascii::ascii_info
567c4762a1bSJed Brown   test:
568c4762a1bSJed Brown     suffix: refine_overlap_2d
569c4762a1bSJed Brown     requires: triangle
570c4762a1bSJed Brown     nsize: {{2 8}separate output}
571c4762a1bSJed Brown     args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -test_partition -overlap {{0 1 2}separate output} -dm_view ascii::ascii_info
572c4762a1bSJed Brown 
573c4762a1bSJed Brown   # Parallel simple partitioner tests
574c4762a1bSJed Brown   test:
575c4762a1bSJed Brown     suffix: part_simple_0
576c4762a1bSJed Brown     requires: triangle
577c4762a1bSJed Brown     nsize: 2
578c4762a1bSJed Brown     args: -dim 2 -cell_simplex 1 -dm_refine 0 -interpolate 0 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail
579c4762a1bSJed Brown   test:
580c4762a1bSJed Brown     suffix: part_simple_1
581c4762a1bSJed Brown     requires: triangle
582c4762a1bSJed Brown     nsize: 8
583c4762a1bSJed Brown     args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail
584c4762a1bSJed Brown 
585c4762a1bSJed Brown   # Parallel partitioner tests
586c4762a1bSJed Brown   test:
587c4762a1bSJed Brown     suffix: part_parmetis_0
588c4762a1bSJed Brown     requires: parmetis
589c4762a1bSJed Brown     nsize: 2
590c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type parmetis -dm_view -petscpartitioner_view -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph
591c4762a1bSJed Brown   test:
592c4762a1bSJed Brown     suffix: part_ptscotch_0
593c4762a1bSJed Brown     requires: ptscotch
594c4762a1bSJed Brown     nsize: 2
595c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -dm_refine 0 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_strategy quality -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph
596c4762a1bSJed Brown   test:
597c4762a1bSJed Brown     suffix: part_ptscotch_1
598c4762a1bSJed Brown     requires: ptscotch
599c4762a1bSJed Brown     nsize: 8
600c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_imbalance 0.1
601c4762a1bSJed Brown 
602c4762a1bSJed Brown   # CGNS reader tests 10-11 (need to find smaller test meshes)
603c4762a1bSJed Brown   test:
604c4762a1bSJed Brown     suffix: cgns_0
605c4762a1bSJed Brown     requires: cgns
606c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/tut21.cgns -interpolate 1 -dm_view
607c4762a1bSJed Brown 
608c4762a1bSJed Brown   # Gmsh mesh reader tests
609c4762a1bSJed Brown   test:
610c4762a1bSJed Brown     suffix: gmsh_0
611c4762a1bSJed Brown     requires: !single
612c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh -interpolate 1 -dm_view
613c4762a1bSJed Brown   test:
614c4762a1bSJed Brown     suffix: gmsh_1
615c4762a1bSJed Brown     requires: !single
616c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -interpolate 1 -dm_view
617c4762a1bSJed Brown   test:
618c4762a1bSJed Brown     suffix: gmsh_2
619c4762a1bSJed Brown     requires: !single
620c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -interpolate 1 -dm_view
621c4762a1bSJed Brown   test:
622c4762a1bSJed Brown     suffix: gmsh_3
623c4762a1bSJed Brown     nsize: 3
624c4762a1bSJed Brown     requires: !single
625c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -test_partition -interpolate 1 -dm_view
626c4762a1bSJed Brown   test:
627c4762a1bSJed Brown     suffix: gmsh_4
628c4762a1bSJed Brown     nsize: 3
629c4762a1bSJed Brown     requires: !single
630c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -test_partition -interpolate 1 -dm_view
631c4762a1bSJed Brown   test:
632c4762a1bSJed Brown     suffix: gmsh_5
633c4762a1bSJed Brown     requires: !single
634c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_quad.msh -interpolate 1 -dm_view
635c4762a1bSJed Brown   # TODO: it seems the mesh is not a valid gmsh (inverted cell)
636c4762a1bSJed Brown   test:
637c4762a1bSJed Brown     suffix: gmsh_6
638c4762a1bSJed Brown     requires: !single
639c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -interpolate 1 -dm_view -final_diagnostics 0
640c4762a1bSJed Brown   test:
641c4762a1bSJed Brown     suffix: gmsh_7
64254fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
643c4762a1bSJed Brown   test:
644c4762a1bSJed Brown     suffix: gmsh_8
64554fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
646c4762a1bSJed Brown   testset:
64754fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
648c4762a1bSJed Brown     test:
649c4762a1bSJed Brown       suffix: gmsh_9
650c4762a1bSJed Brown     test:
651c4762a1bSJed Brown       suffix: gmsh_9_periodic_0
652c4762a1bSJed Brown       args: -dm_plex_gmsh_periodic 0
653c4762a1bSJed Brown   testset:
65454fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
655c4762a1bSJed Brown     test:
656c4762a1bSJed Brown       suffix: gmsh_10
657c4762a1bSJed Brown     test:
658c4762a1bSJed Brown       suffix: gmsh_10_periodic_0
659c4762a1bSJed Brown       args: -dm_plex_gmsh_periodic 0
660c4762a1bSJed Brown   testset:
66154fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all -dm_refine 1
662c4762a1bSJed Brown     test:
663c4762a1bSJed Brown       suffix: gmsh_11
664c4762a1bSJed Brown     test:
665c4762a1bSJed Brown       suffix: gmsh_11_periodic_0
666c4762a1bSJed Brown       args: -dm_plex_gmsh_periodic 0
667c4762a1bSJed Brown   # TODO: it seems the mesh is not a valid gmsh (inverted cell)
668c4762a1bSJed Brown   test:
669c4762a1bSJed Brown     suffix: gmsh_12
670c4762a1bSJed Brown     nsize: 4
671c4762a1bSJed Brown     requires: !single mpiio
672c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -viewer_binary_mpiio -petscpartitioner_type simple -interpolate 1 -dm_view -final_diagnostics 0
673c4762a1bSJed Brown   test:
674c4762a1bSJed Brown     suffix: gmsh_13_hybs2t
675c4762a1bSJed Brown     nsize: 4
67696ca5757SLisandro Dalcin     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -petscpartitioner_type simple -interpolate 1 -dm_view -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all
677c4762a1bSJed Brown   test:
678c4762a1bSJed Brown     suffix: gmsh_14_ext
679c4762a1bSJed Brown     requires: !single
68054fcfd0cSMatthew G. Knepley     args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all
681c4762a1bSJed Brown   test:
682c4762a1bSJed Brown     suffix: gmsh_14_ext_s2t
683c4762a1bSJed Brown     requires: !single
68496ca5757SLisandro Dalcin     args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
685c4762a1bSJed Brown   test:
686c4762a1bSJed Brown     suffix: gmsh_15_hyb3d
68754fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all
688c4762a1bSJed Brown   test:
689c4762a1bSJed Brown     suffix: gmsh_15_hyb3d_vtk
69054fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view vtk: -interpolate -dm_plex_gmsh_hybrid -dm_plex_check_all
691c4762a1bSJed Brown   test:
692c4762a1bSJed Brown     suffix: gmsh_15_hyb3d_s2t
69396ca5757SLisandro Dalcin     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
694c4762a1bSJed Brown   test:
695c4762a1bSJed Brown     suffix: gmsh_16_spheresurface
696c4762a1bSJed Brown     nsize : 4
69754fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
698c4762a1bSJed Brown   test:
699c4762a1bSJed Brown     suffix: gmsh_16_spheresurface_s2t
700c4762a1bSJed Brown     nsize : 4
70196ca5757SLisandro Dalcin     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
702c4762a1bSJed Brown   test:
703c4762a1bSJed Brown     suffix: gmsh_16_spheresurface_extruded
704c4762a1bSJed Brown     nsize : 4
70554fcfd0cSMatthew G. Knepley     args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
706c4762a1bSJed Brown   test:
707c4762a1bSJed Brown     suffix: gmsh_16_spheresurface_extruded_s2t
708c4762a1bSJed Brown     nsize : 4
70996ca5757SLisandro Dalcin     args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
710c4762a1bSJed Brown   test:
711c4762a1bSJed Brown     suffix: gmsh_17_hyb3d_interp_ascii
71254fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.msh -dm_view -interpolate -dm_plex_check_all
713c4762a1bSJed Brown   test:
714c4762a1bSJed Brown     suffix: exodus_17_hyb3d_interp_ascii
715c4762a1bSJed Brown     requires: exodusii
71654fcfd0cSMatthew G. Knepley     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.exo -dm_view -interpolate -dm_plex_check_all
717c4762a1bSJed Brown 
718c4762a1bSJed Brown   # Legacy Gmsh v22/v40 ascii/binary reader tests
719c4762a1bSJed Brown   testset:
720c4762a1bSJed Brown     output_file: output/ex1_gmsh_3d_legacy.out
72154fcfd0cSMatthew G. Knepley     args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
722c4762a1bSJed Brown     test:
723c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v22
724c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2
725c4762a1bSJed Brown     test:
726c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v40
727c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh4
728c4762a1bSJed Brown     test:
729c4762a1bSJed Brown       suffix: gmsh_3d_binary_v22
730c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh2
731c4762a1bSJed Brown     test:
732c4762a1bSJed Brown       suffix: gmsh_3d_binary_v40
733c4762a1bSJed Brown       requires: long64
734c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh4
735c4762a1bSJed Brown 
736c4762a1bSJed Brown   # Gmsh v41 ascii/binary reader tests
737c4762a1bSJed Brown   testset: # 32bit mesh, sequential
73854fcfd0cSMatthew G. Knepley     args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
739c4762a1bSJed Brown     output_file: output/ex1_gmsh_3d_32.out
740c4762a1bSJed Brown     test:
741c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v41_32
742c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh
743c4762a1bSJed Brown     test:
744c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_32
745c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh
746c4762a1bSJed Brown     test:
747c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_32_mpiio
748c4762a1bSJed Brown       requires: define(PETSC_HAVE_MPIIO)
749c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio
750c4762a1bSJed Brown   testset:  # 32bit mesh, parallel
75154fcfd0cSMatthew G. Knepley     args:  -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
752c4762a1bSJed Brown     nsize: 2
753c4762a1bSJed Brown     output_file: output/ex1_gmsh_3d_32_np2.out
754c4762a1bSJed Brown     test:
755c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v41_32_np2
756c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh
757c4762a1bSJed Brown     test:
758c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_32_np2
759c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh
760c4762a1bSJed Brown     test:
761c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_32_np2_mpiio
762c4762a1bSJed Brown       requires: define(PETSC_HAVE_MPIIO)
763c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio
764c4762a1bSJed Brown   testset: # 64bit mesh, sequential
76554fcfd0cSMatthew G. Knepley     args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
766c4762a1bSJed Brown     output_file: output/ex1_gmsh_3d_64.out
767c4762a1bSJed Brown     test:
768c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v41_64
769c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh
770c4762a1bSJed Brown     test:
771c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_64
772c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh
773c4762a1bSJed Brown     test:
774c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_64_mpiio
775c4762a1bSJed Brown       requires: define(PETSC_HAVE_MPIIO)
776c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio
777c4762a1bSJed Brown   testset:  # 64bit mesh, parallel
77854fcfd0cSMatthew G. Knepley     args:  -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
779c4762a1bSJed Brown     nsize: 2
780c4762a1bSJed Brown     output_file: output/ex1_gmsh_3d_64_np2.out
781c4762a1bSJed Brown     test:
782c4762a1bSJed Brown       suffix: gmsh_3d_ascii_v41_64_np2
783c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh
784c4762a1bSJed Brown     test:
785c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_64_np2
786c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh
787c4762a1bSJed Brown     test:
788c4762a1bSJed Brown       suffix: gmsh_3d_binary_v41_64_np2_mpiio
789c4762a1bSJed Brown       requires: define(PETSC_HAVE_MPIIO)
790c4762a1bSJed Brown       args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio
791c4762a1bSJed Brown 
792c4762a1bSJed Brown   # Fluent mesh reader tests
793c4762a1bSJed Brown   # TODO: Geometry checks fail
794c4762a1bSJed Brown   test:
795c4762a1bSJed Brown     suffix: fluent_0
796c4762a1bSJed Brown     requires: !complex
797c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -dm_view -final_diagnostics 0
798c4762a1bSJed Brown   test:
799c4762a1bSJed Brown     suffix: fluent_1
800c4762a1bSJed Brown     nsize: 3
801c4762a1bSJed Brown     requires: !complex
802c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -test_partition -dm_view -final_diagnostics 0
803c4762a1bSJed Brown   test:
804c4762a1bSJed Brown     suffix: fluent_2
805c4762a1bSJed Brown     requires: !complex
806c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets_ascii.cas -interpolate 1 -dm_view -final_diagnostics 0
807c4762a1bSJed Brown   test:
808c4762a1bSJed Brown     suffix: fluent_3
809c4762a1bSJed Brown     requires: !complex
810c4762a1bSJed Brown     TODO: Fails on non-linux: fseek(), fileno() ? https://gitlab.com/petsc/petsc/merge_requests/2206#note_238166382
811c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets.cas -interpolate 1 -dm_view -final_diagnostics 0
812c4762a1bSJed Brown 
813c4762a1bSJed Brown   # Med mesh reader tests, including parallel file reads
814c4762a1bSJed Brown   test:
815c4762a1bSJed Brown     suffix: med_0
816c4762a1bSJed Brown     requires: med
817c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -dm_view
818c4762a1bSJed Brown   test:
819c4762a1bSJed Brown     suffix: med_1
820c4762a1bSJed Brown     requires: med
821c4762a1bSJed Brown     nsize: 3
822c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -petscpartitioner_type simple -dm_view
823c4762a1bSJed Brown   test:
824c4762a1bSJed Brown     suffix: med_2
825c4762a1bSJed Brown     requires: med
826c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -dm_view
827c4762a1bSJed Brown   test:
828c4762a1bSJed Brown     suffix: med_3
829c4762a1bSJed Brown     requires: med
830c4762a1bSJed Brown     TODO: MED
831c4762a1bSJed Brown     nsize: 3
832c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -petscpartitioner_type simple -dm_view
833c4762a1bSJed Brown 
834c4762a1bSJed Brown   # Test shape quality
835c4762a1bSJed Brown   test:
836c4762a1bSJed Brown     suffix: test_shape
837c4762a1bSJed Brown     requires: ctetgen
83854fcfd0cSMatthew G. Knepley     args: -dim 3 -interpolate -dm_refine_hierarchy 3 -dm_plex_check_all -dm_plex_check_cell_shape
839c4762a1bSJed Brown 
840c4762a1bSJed Brown   # Test simplex to tensor conversion
841c4762a1bSJed Brown   test:
842c4762a1bSJed Brown     suffix: s2t2
843c4762a1bSJed Brown     requires: triangle
84496ca5757SLisandro Dalcin     args: -dim 2 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail
845c4762a1bSJed Brown 
846c4762a1bSJed Brown   test:
847c4762a1bSJed Brown     suffix: s2t3
848c4762a1bSJed Brown     requires: ctetgen
84996ca5757SLisandro Dalcin     args: -dim 3 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail
850c4762a1bSJed Brown 
851c4762a1bSJed Brown   # Test domain shapes
852c4762a1bSJed Brown   test:
853c4762a1bSJed Brown     suffix: cylinder
85454fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -dm_plex_check_all -dm_view
855c4762a1bSJed Brown 
856c4762a1bSJed Brown   test:
857c4762a1bSJed Brown     suffix: cylinder_per
85854fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -z_periodicity periodic -dm_plex_check_all -dm_view
859c4762a1bSJed Brown 
860c4762a1bSJed Brown   test:
861c4762a1bSJed Brown     suffix: cylinder_wedge
86254fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all
863c4762a1bSJed Brown 
864c4762a1bSJed Brown   test:
865c4762a1bSJed Brown     suffix: cylinder_wedge_int
866c4762a1bSJed Brown     output_file: output/ex1_cylinder_wedge.out
86754fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all
868c4762a1bSJed Brown 
869c4762a1bSJed Brown   test:
870c4762a1bSJed Brown     suffix: box_2d
87154fcfd0cSMatthew G. Knepley     args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view
872c4762a1bSJed Brown 
873c4762a1bSJed Brown   test:
874c4762a1bSJed Brown     suffix: box_2d_per
87554fcfd0cSMatthew G. Knepley     args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view
876c4762a1bSJed Brown 
877c4762a1bSJed Brown   test:
878c4762a1bSJed Brown     suffix: box_2d_per_unint
87954fcfd0cSMatthew G. Knepley     args: -dim 2 -cell_simplex 0 -interpolate 0 -domain_shape box -domain_box_sizes 3,3 -dm_plex_check_all -dm_view ::ascii_info_detail
880c4762a1bSJed Brown 
881c4762a1bSJed Brown   test:
882c4762a1bSJed Brown     suffix: box_3d
88354fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 3 -dm_plex_check_all -dm_view
884c4762a1bSJed Brown 
885c4762a1bSJed Brown   test:
886c4762a1bSJed Brown     requires: triangle
887c4762a1bSJed Brown     suffix: box_wedge
88854fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -dm_view vtk: -dm_plex_check_all
889c4762a1bSJed Brown 
890c4762a1bSJed Brown   testset:
891c4762a1bSJed Brown     requires: triangle
89296ca5757SLisandro Dalcin     args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -domain_box_sizes 2,3,1 -dm_view -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
893c4762a1bSJed Brown     test:
894c4762a1bSJed Brown       suffix: box_wedge_s2t
895c4762a1bSJed Brown     test:
896c4762a1bSJed Brown       nsize: 3
897c4762a1bSJed Brown       args: -petscpartitioner_type simple
898c4762a1bSJed Brown       suffix: box_wedge_s2t_parallel
899c4762a1bSJed Brown 
900c4762a1bSJed Brown   # Test GLVis output
901c4762a1bSJed Brown   test:
902c4762a1bSJed Brown     suffix: glvis_2d_tet
903c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0 -dm_view glvis:
904c4762a1bSJed Brown 
905c4762a1bSJed Brown   test:
906c4762a1bSJed Brown     suffix: glvis_2d_tet_per
907c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0
908c4762a1bSJed Brown 
909c4762a1bSJed Brown   test:
910c4762a1bSJed Brown     suffix: glvis_2d_tet_per_mfem
911c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate
912c4762a1bSJed Brown 
913c4762a1bSJed Brown   test:
914c4762a1bSJed Brown     suffix: glvis_2d_quad
915c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -dm_view glvis:
916c4762a1bSJed Brown 
917c4762a1bSJed Brown   test:
918c4762a1bSJed Brown     suffix: glvis_2d_quad_per
919c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary
920c4762a1bSJed Brown 
921c4762a1bSJed Brown   test:
922c4762a1bSJed Brown     suffix: glvis_2d_quad_per_mfem
923c4762a1bSJed Brown     args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem
924c4762a1bSJed Brown 
925c4762a1bSJed Brown   test:
926c4762a1bSJed Brown     suffix: glvis_3d_tet
927c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_plex_gmsh_periodic 0 -dm_view glvis:
928c4762a1bSJed Brown 
929c4762a1bSJed Brown   test:
930c4762a1bSJed Brown     suffix: glvis_3d_tet_per
931c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view glvis: -interpolate -viewer_glvis_dm_plex_enable_boundary
932c4762a1bSJed Brown 
933c4762a1bSJed Brown   test:
934c4762a1bSJed Brown     suffix: glvis_3d_tet_per_mfem
935c4762a1bSJed Brown     TODO: broken
936c4762a1bSJed Brown     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate
937c4762a1bSJed Brown 
938c4762a1bSJed Brown   test:
939c4762a1bSJed Brown     suffix: glvis_3d_hex
94054fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -dm_view glvis:
941c4762a1bSJed Brown 
942c4762a1bSJed Brown   test:
943c4762a1bSJed Brown     suffix: glvis_3d_hex_per
94454fcfd0cSMatthew G. Knepley     args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0
945c4762a1bSJed Brown 
946c4762a1bSJed Brown   test:
947c4762a1bSJed Brown     suffix: glvis_3d_hex_per_mfem
948c4762a1bSJed Brown     args: -dim 3 -cell_simplex 0 -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -interpolate
949c4762a1bSJed Brown 
950c4762a1bSJed Brown   # Test P4EST
951c4762a1bSJed Brown   testset:
952c4762a1bSJed Brown     requires: p4est
95354fcfd0cSMatthew G. Knepley     args: -interpolate -dm_view -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 1
954c4762a1bSJed Brown     test:
955c4762a1bSJed Brown       suffix: p4est_periodic
956c4762a1bSJed Brown       args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash
957c4762a1bSJed Brown     test:
958c4762a1bSJed Brown       suffix: p4est_periodic_3d
959c4762a1bSJed Brown       args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash
960c4762a1bSJed Brown     test:
961c4762a1bSJed Brown       suffix: p4est_gmsh_periodic
962c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
963c4762a1bSJed Brown     test:
964c4762a1bSJed Brown       suffix: p4est_gmsh_surface
965c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
966c4762a1bSJed Brown     test:
967c4762a1bSJed Brown       suffix: p4est_gmsh_surface_parallel
968c4762a1bSJed Brown       nsize: 2
969c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -petscpartitioner_type simple -dm_view ::load_balance
970c4762a1bSJed Brown     test:
971c4762a1bSJed Brown       suffix: p4est_hyb_2d
972c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh
973c4762a1bSJed Brown     test:
974c4762a1bSJed Brown       suffix: p4est_hyb_3d
975c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh
976c4762a1bSJed Brown     test:
977c4762a1bSJed Brown       requires: ctetgen
978c4762a1bSJed Brown       suffix: p4est_s2t_bugfaces_3d
979c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 0 -dim 3 -domain_box_sizes 1,1 -cell_simplex
980c4762a1bSJed Brown     test:
981c4762a1bSJed Brown       suffix: p4est_bug_overlapsf
982c4762a1bSJed Brown       nsize: 3
983c4762a1bSJed Brown       args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash  -petscpartitioner_type simple
984c4762a1bSJed Brown     test:
985c4762a1bSJed Brown       suffix: p4est_redistribute
986c4762a1bSJed Brown       nsize: 3
987c4762a1bSJed Brown       args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash  -petscpartitioner_type simple -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_view ::load_balance
988c4762a1bSJed Brown     test:
989c4762a1bSJed Brown       suffix: p4est_gmsh_s2t_3d
990c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
991c4762a1bSJed Brown     test:
992c4762a1bSJed Brown       suffix: p4est_gmsh_s2t_3d_hash
993c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 1 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
994c4762a1bSJed Brown     test:
995c4762a1bSJed Brown       requires: long_runtime
996c4762a1bSJed Brown       suffix: p4est_gmsh_periodic_3d
997c4762a1bSJed Brown       args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
998c4762a1bSJed Brown 
999c4762a1bSJed Brown   testset:
1000c4762a1bSJed Brown     requires: p4est
1001c4762a1bSJed Brown     nsize: 6
100254fcfd0cSMatthew G. Knepley     args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 0
1003c4762a1bSJed Brown     test:
100454fcfd0cSMatthew G. Knepley       TODO: interface cones do not conform
1005c4762a1bSJed Brown       suffix: p4est_par_periodic
1006c4762a1bSJed Brown       args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
1007c4762a1bSJed Brown     test:
100854fcfd0cSMatthew G. Knepley       TODO: interface cones do not conform
1009c4762a1bSJed Brown       suffix: p4est_par_periodic_3d
1010c4762a1bSJed Brown       args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
1011c4762a1bSJed Brown     test:
101254fcfd0cSMatthew G. Knepley       TODO: interface cones do not conform
1013c4762a1bSJed Brown       suffix: p4est_par_gmsh_periodic
1014c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
1015c4762a1bSJed Brown     test:
1016c4762a1bSJed Brown       suffix: p4est_par_gmsh_surface
1017c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
1018c4762a1bSJed Brown     test:
1019c4762a1bSJed Brown       suffix: p4est_par_gmsh_s2t_3d
1020c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
1021c4762a1bSJed Brown     test:
102254fcfd0cSMatthew G. Knepley       TODO: interface cones do not conform
1023c4762a1bSJed Brown       suffix: p4est_par_gmsh_s2t_3d_hash
1024c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
1025c4762a1bSJed Brown     test:
1026c4762a1bSJed Brown       requires: long_runtime
1027c4762a1bSJed Brown       suffix: p4est_par_gmsh_periodic_3d
1028c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
1029c4762a1bSJed Brown 
1030c4762a1bSJed Brown   testset:
1031c4762a1bSJed Brown     requires: p4est
1032c4762a1bSJed Brown     nsize: 6
103354fcfd0cSMatthew G. Knepley     args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 1 -petscpartitioner_type simple
1034c4762a1bSJed Brown     test:
1035c4762a1bSJed Brown       suffix: p4est_par_ovl_periodic
1036c4762a1bSJed Brown       args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
1037c4762a1bSJed Brown     #TODO Mesh cell 201 is inverted, vol = 0. (FVM Volume. Is it correct? -> Diagnostics disabled)
1038c4762a1bSJed Brown     test:
1039c4762a1bSJed Brown       suffix: p4est_par_ovl_periodic_3d
1040c4762a1bSJed Brown       args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -final_diagnostics 0
1041c4762a1bSJed Brown     test:
1042c4762a1bSJed Brown       suffix: p4est_par_ovl_gmsh_periodic
1043c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
1044c4762a1bSJed Brown     test:
1045c4762a1bSJed Brown       suffix: p4est_par_ovl_gmsh_surface
1046c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
1047c4762a1bSJed Brown     test:
1048c4762a1bSJed Brown       suffix: p4est_par_ovl_gmsh_s2t_3d
1049c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
1050c4762a1bSJed Brown     test:
1051c4762a1bSJed Brown       suffix: p4est_par_ovl_gmsh_s2t_3d_hash
1052c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
1053c4762a1bSJed Brown     test:
1054c4762a1bSJed Brown       requires: long_runtime
1055c4762a1bSJed Brown       suffix: p4est_par_ovl_gmsh_periodic_3d
1056c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
1057c4762a1bSJed Brown     test:
1058c4762a1bSJed Brown       suffix: p4est_par_ovl_hyb_2d
1059c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh
1060c4762a1bSJed Brown     test:
1061c4762a1bSJed Brown       suffix: p4est_par_ovl_hyb_3d
1062c4762a1bSJed Brown       args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh
1063c4762a1bSJed Brown 
1064c4762a1bSJed Brown   test:
1065c4762a1bSJed Brown     TODO: broken
1066c4762a1bSJed Brown     requires: p4est
1067c4762a1bSJed Brown     nsize: 2
1068c4762a1bSJed Brown     suffix: p4est_bug_labels_noovl
106954fcfd0cSMatthew G. Knepley     args: -interpolate -test_p4est_seq -dm_plex_check_all -dm_forest_minimum_refinement 0 -dm_forest_partition_overlap 1 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -dm_forest_initial_refinement 0 -dm_forest_maximum_refinement 2 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -dm_forest_print_label_error
1070c4762a1bSJed Brown 
1071c4762a1bSJed Brown   test:
1072c4762a1bSJed Brown     requires: p4est
1073c4762a1bSJed Brown     nsize: 2
1074c4762a1bSJed Brown     suffix: p4est_bug_distribute_overlap
107554fcfd0cSMatthew G. Knepley     args: -interpolate -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 0 -conv_seq_1_dm_forest_partition_overlap 0 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -petscpartitioner_type simple -overlap 1 -dm_view ::load_balance
1076c4762a1bSJed Brown     args: -dm_post_overlap_view
1077c4762a1bSJed Brown 
1078c4762a1bSJed Brown   test:
1079c4762a1bSJed Brown     suffix: glvis_2d_hyb
1080c4762a1bSJed Brown     args: -dim 2 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple
1081c4762a1bSJed Brown 
1082c4762a1bSJed Brown   test:
1083c4762a1bSJed Brown     suffix: glvis_3d_hyb
1084c4762a1bSJed Brown     args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple
1085c4762a1bSJed Brown 
1086c4762a1bSJed Brown   test:
1087c4762a1bSJed Brown     suffix: glvis_3d_hyb_s2t
108896ca5757SLisandro Dalcin     args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_3d_cube.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all
1089595782ffSMatthew G. Knepley 
1090595782ffSMatthew G. Knepley   test:
1091595782ffSMatthew G. Knepley     suffix: ref_alfeld2d_0
1092595782ffSMatthew G. Knepley     requires: triangle
1093595782ffSMatthew G. Knepley     args: -dim 2 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner alfeld2d -final_diagnostics
1094595782ffSMatthew G. Knepley   test:
1095595782ffSMatthew G. Knepley     suffix: ref_alfeld3d_0
1096595782ffSMatthew G. Knepley     requires: ctetgen
1097595782ffSMatthew G. Knepley     args: -dim 3 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner alfeld3d -final_diagnostics
1098595782ffSMatthew G. Knepley 
1099*09c713e7SStefano Zampini   # Boundary layer refiners
1100*09c713e7SStefano Zampini   test:
1101*09c713e7SStefano Zampini     suffix: ref_bl_1
1102*09c713e7SStefano Zampini     args: -dim 1 -domain_shape box -cell_simplex 0 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 2 -final_diagnostics -dm_plex_refine_boundarylayer_splits 3 -ext_hfirst {{0 1}}
1103*09c713e7SStefano Zampini   test:
1104*09c713e7SStefano Zampini     suffix: ref_bl_2_tri
1105*09c713e7SStefano Zampini     requires: triangle
1106*09c713e7SStefano Zampini     args: -dim 2 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 3 -final_diagnostics -dm_plex_refine_boundarylayer_splits 4 -ext_hfirst {{0 1}}
1107*09c713e7SStefano Zampini   test:
1108*09c713e7SStefano Zampini     suffix: ref_bl_3_quad
1109*09c713e7SStefano Zampini     args: -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 3 -final_diagnostics -dm_plex_refine_boundarylayer_splits 4 -ext_hfirst {{0 1}}
1110*09c713e7SStefano Zampini   test:
1111*09c713e7SStefano Zampini     suffix: ref_bl_spheresurface_extruded
1112*09c713e7SStefano Zampini     nsize : 4
1113*09c713e7SStefano Zampini     args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple -ext_hfirst {{0 1}separate output} -final_diagnostics -dm_refine 1 -dm_plex_cell_refiner boundarylayer -dm_plex_refine_boundarylayer_splits 2
1114*09c713e7SStefano Zampini   test:
1115*09c713e7SStefano Zampini     suffix: ref_bl_3d_hyb
1116*09c713e7SStefano Zampini     nsize : 4
1117*09c713e7SStefano Zampini     args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_3d_cube.msh -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple -final_diagnostics -dm_refine 1 -dm_plex_cell_refiner boundarylayer -dm_plex_refine_boundarylayer_splits 4 -dm_plex_refine_boundarylayer_progression 3.1
1118c4762a1bSJed Brown TEST*/
1119