xref: /petsc/src/dm/impls/plex/tests/ex1.c (revision 0e278f6a9e2caa6032d3ea3eff6e05375b0538ce)

static char help[] = "Tests various DMPlex routines to construct, refine and distribute a mesh.\n\n";

#include <petscdmplex.h>
#include <petscsf.h>

typedef enum {BOX, CYLINDER, SPHERE, BALL} DomainShape;
enum {STAGE_LOAD, STAGE_DISTRIBUTE, STAGE_REFINE, STAGE_OVERLAP};

typedef struct {
  DM            dm;                /* REQUIRED in order to use SNES evaluation functions */
  PetscInt      debug;             /* The debugging level */
  PetscLogEvent createMeshEvent;
  PetscLogStage stages[4];
  /* Domain and mesh definition */
  PetscInt      dim;                             /* The topological mesh dimension */
  PetscBool     interpolate;                     /* Generate intermediate mesh elements */
  PetscReal     refinementLimit;                 /* The largest allowable cell volume */
  PetscBool     cellSimplex;                     /* Use simplices or hexes */
  PetscBool     cellWedge;                       /* Use wedges */
  DomainShape   domainShape;                     /* Shape of the region to be meshed */
  PetscInt      *domainBoxSizes;                 /* Sizes of the box mesh */
  PetscReal     *domainBoxL,*domainBoxU;         /* Lower left, upper right corner of the box mesh */
  DMBoundaryType periodicity[3];                 /* The domain periodicity */
  char          filename[PETSC_MAX_PATH_LEN];    /* Import mesh from file */
  char          bdfilename[PETSC_MAX_PATH_LEN];  /* Import mesh boundary from file */
  char          extfilename[PETSC_MAX_PATH_LEN]; /* Import 2D mesh to be extruded from file */
  PetscBool     testPartition;                   /* Use a fixed partitioning for testing */
  PetscInt      overlap;                         /* The cell overlap to use during partitioning */
  PetscReal     extrude_thickness;               /* Thickness of extrusion */
  PetscInt      extrude_layers;                  /* Layers to be extruded */
  PetscBool     extrude_hfirst;                  /* New numbering: height first? */
  PetscBool     testp4est[2];
  PetscBool     redistribute;
  PetscBool     final_ref;                       /* Run refinement at the end */
  PetscBool     final_diagnostics;               /* Run diagnostics on the final mesh */
} AppCtx;

PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options)
{
  const char       *dShapes[4] = {"box", "cylinder", "sphere", "ball"};
  PetscInt         shape, bd, n;
  static PetscInt  domainBoxSizes[3] = {1,1,1};
  static PetscReal domainBoxL[3] = {0.,0.,0.};
  static PetscReal domainBoxU[3] = {1.,1.,1.};
  PetscBool        flg;
  PetscErrorCode   ierr;

  PetscFunctionBegin;
  options->debug             = 0;
  options->dim               = 2;
  options->interpolate       = PETSC_FALSE;
  options->refinementLimit   = 0.0;
  options->cellSimplex       = PETSC_TRUE;
  options->cellWedge         = PETSC_FALSE;
  options->domainShape       = BOX;
  options->domainBoxSizes    = NULL;
  options->domainBoxL        = NULL;
  options->domainBoxU        = NULL;
  options->periodicity[0]    = DM_BOUNDARY_NONE;
  options->periodicity[1]    = DM_BOUNDARY_NONE;
  options->periodicity[2]    = DM_BOUNDARY_NONE;
  options->filename[0]       = '\0';
  options->bdfilename[0]     = '\0';
  options->extfilename[0]    = '\0';
  options->testPartition     = PETSC_FALSE;
  options->overlap           = 0;
  options->extrude_layers    = 0;
  options->extrude_thickness = 0.1;
  options->extrude_hfirst    = PETSC_TRUE;
  options->testp4est[0]      = PETSC_FALSE;
  options->testp4est[1]      = PETSC_FALSE;
  options->redistribute      = PETSC_FALSE;
  options->final_ref         = PETSC_FALSE;
  options->final_diagnostics = PETSC_TRUE;

  ierr = PetscOptionsBegin(comm, "", "Meshing Problem Options", "DMPLEX");CHKERRQ(ierr);
  ierr = PetscOptionsBoundedInt("-debug", "The debugging level", "ex1.c", options->debug, &options->debug, NULL,0);CHKERRQ(ierr);
  ierr = PetscOptionsRangeInt("-dim", "The topological mesh dimension", "ex1.c", options->dim, &options->dim, NULL,1,3);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-interpolate", "Generate intermediate mesh elements", "ex1.c", options->interpolate, &options->interpolate, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsReal("-refinement_limit", "The largest allowable cell volume", "ex1.c", options->refinementLimit, &options->refinementLimit, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-cell_simplex", "Use simplices if true, otherwise hexes", "ex1.c", options->cellSimplex, &options->cellSimplex, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-cell_wedge", "Use wedges if true", "ex1.c", options->cellWedge, &options->cellWedge, NULL);CHKERRQ(ierr);
  shape = options->domainShape;
  ierr = PetscOptionsEList("-domain_shape","The shape of the domain","ex1.c", dShapes, 4, dShapes[options->domainShape], &shape, NULL);CHKERRQ(ierr);
  options->domainShape = (DomainShape) shape;
  ierr = PetscOptionsIntArray("-domain_box_sizes","The sizes of the box domain","ex1.c", domainBoxSizes, (n=3,&n), &flg);CHKERRQ(ierr);
  if (flg) { options->domainShape = BOX; options->domainBoxSizes = domainBoxSizes;}
  ierr = PetscOptionsRealArray("-domain_box_ll","Coordinates of the lower left corner of the box domain","ex1.c", domainBoxL, (n=3,&n), &flg);CHKERRQ(ierr);
  if (flg) { options->domainBoxL = domainBoxL;}
  ierr = PetscOptionsRealArray("-domain_box_ur","Coordinates of the upper right corner of the box domain","ex1.c", domainBoxU, (n=3,&n), &flg);CHKERRQ(ierr);
  if (flg) { options->domainBoxU = domainBoxU;}
  bd = options->periodicity[0];
  ierr = PetscOptionsEList("-x_periodicity", "The x-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[0]], &bd, NULL);CHKERRQ(ierr);
  options->periodicity[0] = (DMBoundaryType) bd;
  bd = options->periodicity[1];
  ierr = PetscOptionsEList("-y_periodicity", "The y-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[1]], &bd, NULL);CHKERRQ(ierr);
  options->periodicity[1] = (DMBoundaryType) bd;
  bd = options->periodicity[2];
  ierr = PetscOptionsEList("-z_periodicity", "The z-boundary periodicity", "ex1.c", DMBoundaryTypes, 5, DMBoundaryTypes[options->periodicity[2]], &bd, NULL);CHKERRQ(ierr);
  options->periodicity[2] = (DMBoundaryType) bd;
  ierr = PetscOptionsString("-filename", "The mesh file", "ex1.c", options->filename, options->filename, PETSC_MAX_PATH_LEN, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsString("-bd_filename", "The mesh boundary file", "ex1.c", options->bdfilename, options->bdfilename, sizeof(options->bdfilename), NULL);CHKERRQ(ierr);
  ierr = PetscOptionsString("-ext_filename", "The 2D mesh file to be extruded", "ex1.c", options->extfilename, options->extfilename, sizeof(options->extfilename), &flg);CHKERRQ(ierr);
  if (flg) options->extrude_layers = 2;
  ierr = PetscOptionsBoundedInt("-ext_layers", "The number of layers to extrude", "ex1.c", options->extrude_layers, &options->extrude_layers, NULL,0);CHKERRQ(ierr);
  ierr = PetscOptionsReal("-ext_thickness", "The thickness of the layer to be extruded", "ex1.c", options->extrude_thickness, &options->extrude_thickness, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-ext_hfirst", "Order the cells in the height first", "ex1.c", options->extrude_hfirst, &options->extrude_hfirst, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-test_partition", "Use a fixed partition for testing", "ex1.c", options->testPartition, &options->testPartition, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBoundedInt("-overlap", "The cell overlap for partitioning", "ex1.c", options->overlap, &options->overlap, NULL,0);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-test_p4est_seq", "Test p4est with sequential base DM", "ex1.c", options->testp4est[0], &options->testp4est[0], NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-test_p4est_par", "Test p4est with parallel base DM", "ex1.c", options->testp4est[1], &options->testp4est[1], NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-test_redistribute", "Test redistribution", "ex1.c", options->redistribute, &options->redistribute, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-final_ref", "Run uniform refinement on the final mesh", "ex1.c", options->final_ref, &options->final_ref, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsBool("-final_diagnostics", "Run diagnostics on the final mesh", "ex1.c", options->final_diagnostics, &options->final_diagnostics, NULL);CHKERRQ(ierr);
  ierr = PetscOptionsEnd();

  ierr = PetscLogEventRegister("CreateMesh", DM_CLASSID, &options->createMeshEvent);CHKERRQ(ierr);
  ierr = PetscLogStageRegister("MeshLoad",       &options->stages[STAGE_LOAD]);CHKERRQ(ierr);
  ierr = PetscLogStageRegister("MeshDistribute", &options->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr);
  ierr = PetscLogStageRegister("MeshRefine",     &options->stages[STAGE_REFINE]);CHKERRQ(ierr);
  ierr = PetscLogStageRegister("MeshOverlap",    &options->stages[STAGE_OVERLAP]);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm)
{
  PetscInt       dim                  = user->dim;
  PetscBool      interpolate          = user->interpolate;
  PetscReal      refinementLimit      = user->refinementLimit;
  PetscBool      cellSimplex          = user->cellSimplex;
  PetscBool      cellWedge            = user->cellWedge;
  const char    *filename             = user->filename;
  const char    *bdfilename           = user->bdfilename;
  const char    *extfilename          = user->extfilename;
  PetscBool      testp4est_seq        = user->testp4est[0];
  PetscBool      testp4est_par        = user->testp4est[1];
  PetscInt       triSizes_n2[2]       = {4, 4};
  PetscInt       triPoints_n2[8]      = {3, 5, 6, 7, 0, 1, 2, 4};
  PetscInt       triSizes_n8[8]       = {1, 1, 1, 1, 1, 1, 1, 1};
  PetscInt       triPoints_n8[8]      = {0, 1, 2, 3, 4, 5, 6, 7};
  PetscInt       quadSizes[2]         = {2, 2};
  PetscInt       quadPoints[4]        = {2, 3, 0, 1};
  PetscInt       gmshSizes_n3[3]      = {14, 14, 14};
  PetscInt       gmshPoints_n3[42]    = {1, 2,  4,  5,  9, 10, 11, 15, 16, 20, 21, 27, 28, 29,
                                         3, 8, 12, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40,
                                         0, 6,  7, 13, 14, 17, 18, 19, 22, 23, 24, 25, 26, 41};
  PetscInt       fluentSizes_n3[3]    = {50, 50, 50};
  PetscInt       fluentPoints_n3[150] = { 5,  6,  7,  8, 12, 14, 16,  34,  36,  37,  38,  39,  40,  41,  42,  43,  44,  45,  46,  48,  50,  51,  80,  81,  89,
                                         91, 93, 94, 95, 96, 97, 98,  99, 100, 101, 104, 121, 122, 124, 125, 126, 127, 128, 129, 131, 133, 143, 144, 145, 147,
                                          1,  3,  4,  9, 10, 17, 18,  19,  24,  25,  26,  27,  28,  29,  30,  31,  32,  33,  35,  47,  61,  71,  72,  73,  74,
                                         75, 76, 77, 78, 79, 86, 87,  88,  90,  92, 113, 115, 116, 117, 118, 119, 120, 123, 138, 140, 141, 142, 146, 148, 149,
                                          0,  2, 11, 13, 15, 20, 21,  22,  23,  49,  52,  53,  54,  55,  56,  57,  58,  59,  60,  62,  63,  64,  65,  66,  67,
                                         68, 69, 70, 82, 83, 84, 85, 102, 103, 105, 106, 107, 108, 109, 110, 111, 112, 114, 130, 132, 134, 135, 136, 137, 139};
  size_t         len, bdlen, extlen;
  PetscMPIInt    rank, size;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  ierr = PetscLogEventBegin(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
  ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
  ierr = MPI_Comm_size(comm, &size);CHKERRQ(ierr);
  ierr = PetscStrlen(filename, &len);CHKERRQ(ierr);
  ierr = PetscStrlen(bdfilename, &bdlen);CHKERRQ(ierr);
  ierr = PetscStrlen(extfilename, &extlen);CHKERRQ(ierr);
  ierr = PetscLogStagePush(user->stages[STAGE_LOAD]);CHKERRQ(ierr);
  if (len) {
    ierr = DMPlexCreateFromFile(comm, filename, interpolate, dm);CHKERRQ(ierr);
  } else if (bdlen) {
    DM boundary;

    ierr = DMPlexCreateFromFile(comm, bdfilename, interpolate, &boundary);CHKERRQ(ierr);
    ierr = DMPlexGenerate(boundary, NULL, interpolate, dm);CHKERRQ(ierr);
    ierr = DMDestroy(&boundary);CHKERRQ(ierr);
  } else if (extlen) {
    DM edm;

    ierr = DMPlexCreateFromFile(comm, extfilename, interpolate, &edm);CHKERRQ(ierr);
    ierr = DMPlexExtrude(edm, user->extrude_layers, user->extrude_thickness, user->extrude_hfirst, interpolate, dm);CHKERRQ(ierr);
    ierr = DMDestroy(&edm);CHKERRQ(ierr);
  } else {
    switch (user->domainShape) {
    case BOX:
      if (cellWedge) {
        if (dim != 3) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a wedge mesh, not %D", dim);
        ierr = DMPlexCreateWedgeBoxMesh(comm, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, PETSC_FALSE, interpolate, dm);CHKERRQ(ierr);
      } else {
        ierr = DMPlexCreateBoxMesh(comm, dim, cellSimplex, user->domainBoxSizes, user->domainBoxL, user->domainBoxU, user->periodicity, interpolate, dm);CHKERRQ(ierr);
      }
      break;
    case CYLINDER:
      if (cellSimplex) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Cannot mesh a cylinder with simplices");
      if (dim != 3)    SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Dimension must be 3 for a cylinder mesh, not %D", dim);
      if (cellWedge) {
        ierr = DMPlexCreateWedgeCylinderMesh(comm, 6, interpolate, dm);CHKERRQ(ierr);
      } else {
        ierr = DMPlexCreateHexCylinderMesh(comm, 1, user->periodicity[2], dm);CHKERRQ(ierr);
      }
      break;
    case SPHERE:
      ierr = DMPlexCreateSphereMesh(comm, dim, cellSimplex, 1.0, dm);CHKERRQ(ierr);
      break;
    case BALL:
      ierr = DMPlexCreateBallMesh(comm, dim, 1.0, dm);CHKERRQ(ierr);
      break;
    default: SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Unknown domain shape %D", user->domainShape);
    }
  }
  if (!extlen && user->extrude_layers > 0) {
    DM edm;

    ierr = DMPlexExtrude(*dm, user->extrude_layers, user->extrude_thickness, user->extrude_hfirst, interpolate, &edm);CHKERRQ(ierr);
    ierr = DMDestroy(dm);CHKERRQ(ierr);
    *dm  = edm;
  }
  ierr = DMLocalizeCoordinates(*dm);CHKERRQ(ierr); /* needed for periodic */
  ierr = DMViewFromOptions(*dm,NULL,"-init_dm_view");CHKERRQ(ierr);
  ierr = DMGetDimension(*dm,&dim);CHKERRQ(ierr);

  if (testp4est_seq) {
#if defined(PETSC_HAVE_P4EST)
    DM dmConv = NULL;

    ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);
    ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
    ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr);
    ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    ierr = DMViewFromOptions(*dm,NULL,"-initref_dm_view");CHKERRQ(ierr);
    ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);
    user->cellSimplex = PETSC_FALSE;

    ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_1_");CHKERRQ(ierr);
      ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_1_");CHKERRQ(ierr);
    ierr = DMSetUp(*dm);CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
    ierr = DMConvert(*dm,DMPLEX,&dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_seq_2_");CHKERRQ(ierr);
      ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_seq_2_");CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr);
#else
    SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est");
#endif
  }

  ierr = PetscLogStagePop();CHKERRQ(ierr);
  if (!testp4est_seq) {
    DM refinedMesh     = NULL;
    DM distributedMesh = NULL;

    if (user->testPartition) {
      const PetscInt  *sizes = NULL;
      const PetscInt  *points = NULL;
      PetscPartitioner part;

      if (!rank) {
        if (dim == 2 && cellSimplex && size == 2) {
           sizes = triSizes_n2; points = triPoints_n2;
        } else if (dim == 2 && cellSimplex && size == 8) {
          sizes = triSizes_n8; points = triPoints_n8;
        } else if (dim == 2 && !cellSimplex && size == 2) {
          sizes = quadSizes; points = quadPoints;
        } else if (dim == 2 && size == 3) {
          PetscInt Nc;

          ierr = DMPlexGetHeightStratum(*dm, 0, NULL, &Nc);CHKERRQ(ierr);
          if (Nc == 42) { /* Gmsh 3 & 4 */
            sizes = gmshSizes_n3; points = gmshPoints_n3;
          } else if (Nc == 150) { /* Fluent 1 */
            sizes = fluentSizes_n3; points = fluentPoints_n3;
          } else if (Nc == 42) { /* Med 1 */
          } else if (Nc == 161) { /* Med 3 */
          }
        }
      }
      ierr = DMPlexGetPartitioner(*dm, &part);CHKERRQ(ierr);
      ierr = PetscPartitionerSetType(part, PETSCPARTITIONERSHELL);CHKERRQ(ierr);
      ierr = PetscPartitionerShellSetPartition(part, size, sizes, points);CHKERRQ(ierr);
    } else {
      PetscPartitioner part;

      ierr = DMPlexGetPartitioner(*dm,&part);CHKERRQ(ierr);
      ierr = PetscPartitionerSetFromOptions(part);CHKERRQ(ierr);
    }
    /* Distribute mesh over processes */
    ierr = PetscLogStagePush(user->stages[STAGE_DISTRIBUTE]);CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_dist_view");CHKERRQ(ierr);
    ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr);
    if (distributedMesh) {
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = distributedMesh;
    }
    ierr = PetscLogStagePop();CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-distributed_dm_view");CHKERRQ(ierr);
    /* Refine mesh using a volume constraint */
    ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr);
    ierr = DMPlexSetRefinementUniform(*dm, PETSC_FALSE);CHKERRQ(ierr);
    ierr = DMPlexSetRefinementLimit(*dm, refinementLimit);CHKERRQ(ierr);
    ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr);
    if (refinedMesh) {
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = refinedMesh;
    }
    ierr = PetscLogStagePop();CHKERRQ(ierr);
  }
  ierr = PetscLogStagePush(user->stages[STAGE_REFINE]);CHKERRQ(ierr);
  ierr = DMSetFromOptions(*dm);CHKERRQ(ierr);
  ierr = PetscLogStagePop();CHKERRQ(ierr);

  if (testp4est_par) {
#if defined(PETSC_HAVE_P4EST)
    DM dmConv = NULL;

    ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr);
    ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
    ierr = DMPlexSetCellRefinerType(*dm, DM_REFINER_TO_BOX);CHKERRQ(ierr);
    ierr = DMRefine(*dm, PETSC_COMM_WORLD, &dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    user->cellSimplex = PETSC_FALSE;
    ierr = DMViewFromOptions(*dm, NULL, "-dm_tobox_view");CHKERRQ(ierr);
    ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckPointSF(*dm);CHKERRQ(ierr);
    ierr = DMPlexCheckInterfaceCones(*dm);CHKERRQ(ierr);

    ierr = DMConvert(*dm,dim == 2 ? DMP4EST : DMP8EST,&dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_1_");CHKERRQ(ierr);
      ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_1_");CHKERRQ(ierr);
    ierr = DMSetUp(*dm);CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
    ierr = DMConvert(*dm, DMPLEX, &dmConv);CHKERRQ(ierr);
    if (dmConv) {
      ierr = PetscObjectSetOptionsPrefix((PetscObject) dmConv, "conv_par_2_");CHKERRQ(ierr);
      ierr = DMSetFromOptions(dmConv);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = dmConv;
    }
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, "conv_par_2_");CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
    ierr = PetscObjectSetOptionsPrefix((PetscObject) *dm, NULL);CHKERRQ(ierr);
#else
    SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"Recompile with --download-p4est");
#endif
  }

  /* test redistribution of an already distributed mesh */
  if (user->redistribute) {
    DM       distributedMesh;
    PetscSF  sf;
    PetscInt nranks;

    ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_redist_view");CHKERRQ(ierr);
    ierr = DMPlexDistribute(*dm, 0, NULL, &distributedMesh);CHKERRQ(ierr);
    if (distributedMesh) {
      ierr = DMGetPointSF(distributedMesh, &sf);CHKERRQ(ierr);
      ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
      ierr = DMGetNeighbors(distributedMesh, &nranks, NULL);CHKERRQ(ierr);
      ierr = MPI_Allreduce(MPI_IN_PLACE, &nranks, 1, MPIU_INT, MPI_MIN, PetscObjectComm((PetscObject)*dm));CHKERRQ(ierr);
      ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)*dm)), "Minimum number of neighbors: %D\n", nranks);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = distributedMesh;
    }
    ierr = DMViewFromOptions(*dm, NULL, "-dm_post_redist_view");CHKERRQ(ierr);
  }

  if (user->overlap) {
    DM overlapMesh = NULL;

    /* Add the overlap to refined mesh */
    ierr = PetscLogStagePush(user->stages[STAGE_OVERLAP]);CHKERRQ(ierr);
    ierr = DMViewFromOptions(*dm, NULL, "-dm_pre_overlap_view");CHKERRQ(ierr);
    ierr = DMPlexDistributeOverlap(*dm, user->overlap, NULL, &overlapMesh);CHKERRQ(ierr);
    if (overlapMesh) {
      PetscInt overlap;
      ierr = DMPlexGetOverlap(overlapMesh, &overlap);CHKERRQ(ierr);
      ierr = PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD, "Overlap: %D\n", overlap);CHKERRQ(ierr);
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm = overlapMesh;
    }
    ierr = DMViewFromOptions(*dm, NULL, "-dm_post_overlap_view");CHKERRQ(ierr);
    ierr = PetscLogStagePop();CHKERRQ(ierr);
  }
  if (user->final_ref) {
    DM refinedMesh = NULL;

    ierr = DMPlexSetRefinementUniform(*dm, PETSC_TRUE);CHKERRQ(ierr);
    ierr = DMRefine(*dm, comm, &refinedMesh);CHKERRQ(ierr);
    if (refinedMesh) {
      ierr = DMDestroy(dm);CHKERRQ(ierr);
      *dm  = refinedMesh;
    }
  }

  ierr = PetscObjectSetName((PetscObject) *dm, "Simplicial Mesh");CHKERRQ(ierr);
  ierr = DMViewFromOptions(*dm, NULL, "-dm_view");CHKERRQ(ierr);
  if (user->final_diagnostics) {
    DMPlexInterpolatedFlag interpolated;
    PetscInt  dim, depth;

    ierr = DMGetDimension(*dm, &dim);CHKERRQ(ierr);
    ierr = DMPlexGetDepth(*dm, &depth);CHKERRQ(ierr);
    ierr = DMPlexIsInterpolatedCollective(*dm, &interpolated);CHKERRQ(ierr);

    ierr = DMPlexCheckSymmetry(*dm);CHKERRQ(ierr);
    if (interpolated == DMPLEX_INTERPOLATED_FULL) {
      ierr = DMPlexCheckFaces(*dm, 0);CHKERRQ(ierr);
    }
    ierr = DMPlexCheckSkeleton(*dm, 0);CHKERRQ(ierr);
    ierr = DMPlexCheckGeometry(*dm);CHKERRQ(ierr);
  }
  ierr = PetscLogEventEnd(user->createMeshEvent,0,0,0,0);CHKERRQ(ierr);
  user->dm = *dm;
  PetscFunctionReturn(0);
}

int main(int argc, char **argv)
{
  AppCtx         user;                 /* user-defined work context */
  PetscErrorCode ierr;

  ierr = PetscInitialize(&argc, &argv, NULL, help);if (ierr) return ierr;
  ierr = ProcessOptions(PETSC_COMM_WORLD, &user);CHKERRQ(ierr);
  ierr = CreateMesh(PETSC_COMM_WORLD, &user, &user.dm);CHKERRQ(ierr);
  ierr = DMDestroy(&user.dm);CHKERRQ(ierr);
  ierr = PetscFinalize();
  return ierr;
}

/*TEST

  # CTetGen 0-1
  test:
    suffix: 0
    requires: ctetgen
    args: -dim 3 -ctetgen_verbose 4 -dm_view ascii::ascii_info_detail -info :~sys
  test:
    suffix: 1
    requires: ctetgen
    args: -dim 3 -ctetgen_verbose 4 -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail -info :~sys


  # 2D LaTex and ASCII output 2-9
  test:
    suffix: 2
    requires: triangle
    args: -dim 2 -dm_view ascii::ascii_latex
  test:
    suffix: 3
    requires: triangle
    args: -dim 2 -dm_refine 1 -interpolate 1 -dm_view ascii::ascii_info_detail
  test:
    suffix: 4
    requires: triangle
    nsize: 2
    args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_info_detail
  test:
    suffix: 5
    requires: triangle
    nsize: 2
    args: -dim 2 -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex
  test:
    suffix: 6
    args: -dim 2 -cell_simplex 0 -interpolate -dm_view ascii::ascii_info_detail
  test:
    suffix: 7
    args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -dm_view ascii::ascii_info_detail
  test:
    suffix: 8
    nsize: 2
    args: -dim 2 -cell_simplex 0 -interpolate -dm_refine 1 -interpolate 1 -test_partition -dm_view ascii::ascii_latex

  # 1D ASCII output
  test:
    suffix: 1d_0
    args: -dim 1 -domain_shape box -dm_view ascii::ascii_info_detail
  test:
    suffix: 1d_1
    args: -dim 1 -domain_shape box -dm_refine 2 -dm_view ascii::ascii_info_detail
  test:
    suffix: 1d_2
    args: -dim 1 -domain_box_sizes 5 -x_periodicity periodic -dm_view ascii::ascii_info_detail -dm_plex_check_all

  # Parallel refinement tests with overlap
  test:
    suffix: refine_overlap_1d
    nsize: 2
    args: -dim 1 -domain_box_sizes 4 -dm_refine 1 -overlap {{0 1 2}separate output} -petscpartitioner_type simple -dm_view ascii::ascii_info
  test:
    suffix: refine_overlap_2d
    requires: triangle
    nsize: {{2 8}separate output}
    args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -test_partition -overlap {{0 1 2}separate output} -dm_view ascii::ascii_info

  # Parallel simple partitioner tests
  test:
    suffix: part_simple_0
    requires: triangle
    nsize: 2
    args: -dim 2 -cell_simplex 1 -dm_refine 0 -interpolate 0 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail
  test:
    suffix: part_simple_1
    requires: triangle
    nsize: 8
    args: -dim 2 -cell_simplex 1 -dm_refine 1 -interpolate 1 -petscpartitioner_type simple -partition_view -dm_view ascii::ascii_info_detail

  # Parallel partitioner tests
  test:
    suffix: part_parmetis_0
    requires: parmetis
    nsize: 2
    args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type parmetis -dm_view -petscpartitioner_view -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph
  test:
    suffix: part_ptscotch_0
    requires: ptscotch
    nsize: 2
    args: -dim 2 -cell_simplex 0 -dm_refine 0 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_strategy quality -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_pre_redist_view ::load_balance -dm_post_redist_view ::load_balance -petscpartitioner_view_graph
  test:
    suffix: part_ptscotch_1
    requires: ptscotch
    nsize: 8
    args: -dim 2 -cell_simplex 0 -dm_refine 1 -interpolate 1 -petscpartitioner_type ptscotch -petscpartitioner_view -petscpartitioner_ptscotch_imbalance 0.1

  # CGNS reader tests 10-11 (need to find smaller test meshes)
  test:
    suffix: cgns_0
    requires: cgns
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/tut21.cgns -interpolate 1 -dm_view

  # Gmsh mesh reader tests
  test:
    suffix: gmsh_0
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh -interpolate 1 -dm_view
  test:
    suffix: gmsh_1
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -interpolate 1 -dm_view
  test:
    suffix: gmsh_2
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -interpolate 1 -dm_view
  test:
    suffix: gmsh_3
    nsize: 3
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.msh -test_partition -interpolate 1 -dm_view
  test:
    suffix: gmsh_4
    nsize: 3
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -test_partition -interpolate 1 -dm_view
  test:
    suffix: gmsh_5
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_quad.msh -interpolate 1 -dm_view
  # TODO: it seems the mesh is not a valid gmsh (inverted cell)
  test:
    suffix: gmsh_6
    requires: !single
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -interpolate 1 -dm_view -final_diagnostics 0
  test:
    suffix: gmsh_7
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
  test:
    suffix: gmsh_8
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
  testset:
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic_bin.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    test:
      suffix: gmsh_9
    test:
      suffix: gmsh_9_periodic_0
      args: -dm_plex_gmsh_periodic 0
  testset:
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    test:
      suffix: gmsh_10
    test:
      suffix: gmsh_10_periodic_0
      args: -dm_plex_gmsh_periodic 0
  testset:
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all -dm_refine 1
    test:
      suffix: gmsh_11
    test:
      suffix: gmsh_11_periodic_0
      args: -dm_plex_gmsh_periodic 0
  # TODO: it seems the mesh is not a valid gmsh (inverted cell)
  test:
    suffix: gmsh_12
    nsize: 4
    requires: !single mpiio
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin_physnames.msh -viewer_binary_mpiio -petscpartitioner_type simple -interpolate 1 -dm_view -final_diagnostics 0
  test:
    suffix: gmsh_13_hybs2t
    nsize: 4
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -petscpartitioner_type simple -interpolate 1 -dm_view -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all
  test:
    suffix: gmsh_14_ext
    requires: !single
    args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all
  test:
    suffix: gmsh_14_ext_s2t
    requires: !single
    args: -ext_layers 2 -ext_thickness 1.5 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_bin.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
  test:
    suffix: gmsh_15_hyb3d
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all
  test:
    suffix: gmsh_15_hyb3d_vtk
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view vtk: -interpolate -dm_plex_gmsh_hybrid -dm_plex_check_all
  test:
    suffix: gmsh_15_hyb3d_s2t
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
  test:
    suffix: gmsh_16_spheresurface
    nsize : 4
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
  test:
    suffix: gmsh_16_spheresurface_s2t
    nsize : 4
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
  test:
    suffix: gmsh_16_spheresurface_extruded
    nsize : 4
    args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
  test:
    suffix: gmsh_16_spheresurface_extruded_s2t
    nsize : 4
    args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple
  test:
    suffix: gmsh_17_hyb3d_interp_ascii
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.msh -dm_view -interpolate -dm_plex_check_all
  test:
    suffix: exodus_17_hyb3d_interp_ascii
    requires: exodusii
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_hexwedge.exo -dm_view -interpolate -dm_plex_check_all

  # Legacy Gmsh v22/v40 ascii/binary reader tests
  testset:
    output_file: output/ex1_gmsh_3d_legacy.out
    args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    test:
      suffix: gmsh_3d_ascii_v22
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2
    test:
      suffix: gmsh_3d_ascii_v40
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh4
    test:
      suffix: gmsh_3d_binary_v22
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh2
    test:
      suffix: gmsh_3d_binary_v40
      requires: long64
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary.msh4

  # Gmsh v41 ascii/binary reader tests
  testset: # 32bit mesh, sequential
    args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    output_file: output/ex1_gmsh_3d_32.out
    test:
      suffix: gmsh_3d_ascii_v41_32
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh
    test:
      suffix: gmsh_3d_binary_v41_32
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh
    test:
      suffix: gmsh_3d_binary_v41_32_mpiio
      requires: define(PETSC_HAVE_MPIIO)
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio
  testset:  # 32bit mesh, parallel
    args:  -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    nsize: 2
    output_file: output/ex1_gmsh_3d_32_np2.out
    test:
      suffix: gmsh_3d_ascii_v41_32_np2
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh
    test:
      suffix: gmsh_3d_binary_v41_32_np2
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh
    test:
      suffix: gmsh_3d_binary_v41_32_np2_mpiio
      requires: define(PETSC_HAVE_MPIIO)
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh -viewer_binary_mpiio
  testset: # 64bit mesh, sequential
    args: -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    output_file: output/ex1_gmsh_3d_64.out
    test:
      suffix: gmsh_3d_ascii_v41_64
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh
    test:
      suffix: gmsh_3d_binary_v41_64
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh
    test:
      suffix: gmsh_3d_binary_v41_64_mpiio
      requires: define(PETSC_HAVE_MPIIO)
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio
  testset:  # 64bit mesh, parallel
    args:  -petscpartitioner_type simple -dm_view ::ascii_info_detail -interpolate -dm_plex_check_all
    nsize: 2
    output_file: output/ex1_gmsh_3d_64_np2.out
    test:
      suffix: gmsh_3d_ascii_v41_64_np2
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh
    test:
      suffix: gmsh_3d_binary_v41_64_np2
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh
    test:
      suffix: gmsh_3d_binary_v41_64_np2_mpiio
      requires: define(PETSC_HAVE_MPIIO)
      args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh -viewer_binary_mpiio

  # Fluent mesh reader tests
  # TODO: Geometry checks fail
  test:
    suffix: fluent_0
    requires: !complex
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -dm_view -final_diagnostics 0
  test:
    suffix: fluent_1
    nsize: 3
    requires: !complex
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.cas -interpolate 1 -test_partition -dm_view -final_diagnostics 0
  test:
    suffix: fluent_2
    requires: !complex
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets_ascii.cas -interpolate 1 -dm_view -final_diagnostics 0
  test:
    suffix: fluent_3
    requires: !complex
    TODO: Fails on non-linux: fseek(), fileno() ? https://gitlab.com/petsc/petsc/merge_requests/2206#note_238166382
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cube_5tets.cas -interpolate 1 -dm_view -final_diagnostics 0

  # Med mesh reader tests, including parallel file reads
  test:
    suffix: med_0
    requires: med
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -dm_view
  test:
    suffix: med_1
    requires: med
    nsize: 3
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square.med -interpolate 1 -petscpartitioner_type simple -dm_view
  test:
    suffix: med_2
    requires: med
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -dm_view
  test:
    suffix: med_3
    requires: med
    TODO: MED
    nsize: 3
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/cylinder.med -interpolate 1 -petscpartitioner_type simple -dm_view

  # Test shape quality
  test:
    suffix: test_shape
    requires: ctetgen
    args: -dim 3 -interpolate -dm_refine_hierarchy 3 -dm_plex_check_all -dm_plex_check_cell_shape

  # Test simplex to tensor conversion
  test:
    suffix: s2t2
    requires: triangle
    args: -dim 2 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail

  test:
    suffix: s2t3
    requires: ctetgen
    args: -dim 3 -dm_refine 1 -interpolate -dm_plex_cell_refiner tobox -refinement_limit 0.0625 -dm_view ascii::ascii_info_detail

  # Test domain shapes
  test:
    suffix: cylinder
    args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -dm_plex_check_all -dm_view

  test:
    suffix: cylinder_per
    args: -dim 3 -cell_simplex 0 -interpolate -domain_shape cylinder -z_periodicity periodic -dm_plex_check_all -dm_view

  test:
    suffix: cylinder_wedge
    args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all

  test:
    suffix: cylinder_wedge_int
    output_file: output/ex1_cylinder_wedge.out
    args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape cylinder -dm_view vtk: -dm_plex_check_all

  test:
    suffix: box_2d
    args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view

  test:
    suffix: box_2d_per
    args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 2 -dm_plex_check_all -dm_view

  test:
    suffix: box_2d_per_unint
    args: -dim 2 -cell_simplex 0 -interpolate 0 -domain_shape box -domain_box_sizes 3,3 -dm_plex_check_all -dm_view ::ascii_info_detail

  test:
    suffix: box_3d
    args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -dm_refine 3 -dm_plex_check_all -dm_view

  test:
    requires: triangle
    suffix: box_wedge
    args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -dm_view vtk: -dm_plex_check_all

  testset:
    requires: triangle
    args: -dim 3 -cell_simplex 0 -interpolate -cell_wedge -domain_shape box -domain_box_sizes 2,3,1 -dm_view -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner tobox
    test:
      suffix: box_wedge_s2t
    test:
      nsize: 3
      args: -petscpartitioner_type simple
      suffix: box_wedge_s2t_parallel

  # Test GLVis output
  test:
    suffix: glvis_2d_tet
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_plex_gmsh_periodic 0 -dm_view glvis:

  test:
    suffix: glvis_2d_tet_per
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0

  test:
    suffix: glvis_2d_tet_per_mfem
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate

  test:
    suffix: glvis_2d_quad
    args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -dm_view glvis:

  test:
    suffix: glvis_2d_quad_per
    args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary

  test:
    suffix: glvis_2d_quad_per_mfem
    args: -dim 2 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3 -x_periodicity periodic -y_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem

  test:
    suffix: glvis_3d_tet
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_plex_gmsh_periodic 0 -dm_view glvis:

  test:
    suffix: glvis_3d_tet_per
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -dm_view glvis: -interpolate -viewer_glvis_dm_plex_enable_boundary

  test:
    suffix: glvis_3d_tet_per_mfem
    TODO: broken
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere_bin.msh -viewer_glvis_dm_plex_enable_mfem -dm_view glvis: -interpolate

  test:
    suffix: glvis_3d_hex
    args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -dm_view glvis:

  test:
    suffix: glvis_3d_hex_per
    args: -dim 3 -cell_simplex 0 -interpolate -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary 0

  test:
    suffix: glvis_3d_hex_per_mfem
    args: -dim 3 -cell_simplex 0 -domain_shape box -domain_box_sizes 3,3,3 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -viewer_glvis_dm_plex_enable_mfem -interpolate

  # Test P4EST
  testset:
    requires: p4est
    args: -interpolate -dm_view -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 1
    test:
      suffix: p4est_periodic
      args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash
    test:
      suffix: p4est_periodic_3d
      args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash
    test:
      suffix: p4est_gmsh_periodic
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
    test:
      suffix: p4est_gmsh_surface
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
    test:
      suffix: p4est_gmsh_surface_parallel
      nsize: 2
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -petscpartitioner_type simple -dm_view ::load_balance
    test:
      suffix: p4est_hyb_2d
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh
    test:
      suffix: p4est_hyb_3d
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh
    test:
      requires: ctetgen
      suffix: p4est_s2t_bugfaces_3d
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 0 -dim 3 -domain_box_sizes 1,1 -cell_simplex
    test:
      suffix: p4est_bug_overlapsf
      nsize: 3
      args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash  -petscpartitioner_type simple
    test:
      suffix: p4est_redistribute
      nsize: 3
      args: -dim 3 -cell_simplex 0 -domain_box_sizes 2,2,1 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash  -petscpartitioner_type simple -test_redistribute -dm_plex_csr_via_mat {{0 1}} -dm_view ::load_balance
    test:
      suffix: p4est_gmsh_s2t_3d
      args: -conv_seq_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      suffix: p4est_gmsh_s2t_3d_hash
      args: -conv_seq_1_dm_forest_initial_refinement 1 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      requires: long_runtime
      suffix: p4est_gmsh_periodic_3d
      args: -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 1 -conv_seq_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh

  testset:
    requires: p4est
    nsize: 6
    args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 0
    test:
      TODO: interface cones do not conform
      suffix: p4est_par_periodic
      args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
    test:
      TODO: interface cones do not conform
      suffix: p4est_par_periodic_3d
      args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity periodic -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
    test:
      TODO: interface cones do not conform
      suffix: p4est_par_gmsh_periodic
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
    test:
      suffix: p4est_par_gmsh_surface
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
    test:
      suffix: p4est_par_gmsh_s2t_3d
      args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      TODO: interface cones do not conform
      suffix: p4est_par_gmsh_s2t_3d_hash
      args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      requires: long_runtime
      suffix: p4est_par_gmsh_periodic_3d
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh

  testset:
    requires: p4est
    nsize: 6
    args: -interpolate -test_p4est_par -conv_par_2_dm_plex_check_all -conv_par_1_dm_forest_minimum_refinement 1 -conv_par_1_dm_forest_partition_overlap 1 -petscpartitioner_type simple
    test:
      suffix: p4est_par_ovl_periodic
      args: -dim 2 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -domain_box_sizes 3,5 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash
    #TODO Mesh cell 201 is inverted, vol = 0. (FVM Volume. Is it correct? -> Diagnostics disabled)
    test:
      suffix: p4est_par_ovl_periodic_3d
      args: -dim 3 -domain_shape box -cell_simplex 0 -x_periodicity periodic -y_periodicity periodic -z_periodicity -domain_box_sizes 3,5,4 -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -final_diagnostics 0
    test:
      suffix: p4est_par_ovl_gmsh_periodic
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/square_periodic.msh
    test:
      suffix: p4est_par_ovl_gmsh_surface
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3
    test:
      suffix: p4est_par_ovl_gmsh_s2t_3d
      args: -conv_par_1_dm_forest_initial_refinement 1 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      suffix: p4est_par_ovl_gmsh_s2t_3d_hash
      args: -conv_par_1_dm_forest_initial_refinement 1 -conv_par_1_dm_forest_maximum_refinement 2 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/doublet-tet.msh
    test:
      requires: long_runtime
      suffix: p4est_par_ovl_gmsh_periodic_3d
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/mesh-3d-box-innersphere.msh
    test:
      suffix: p4est_par_ovl_hyb_2d
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh
    test:
      suffix: p4est_par_ovl_hyb_3d
      args: -conv_par_1_dm_forest_initial_refinement 0 -conv_par_1_dm_forest_maximum_refinement 1 -conv_par_1_dm_p4est_refine_pattern hash -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh

  test:
    TODO: broken
    requires: p4est
    nsize: 2
    suffix: p4est_bug_labels_noovl
    args: -interpolate -test_p4est_seq -dm_plex_check_all -dm_forest_minimum_refinement 0 -dm_forest_partition_overlap 1 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -dm_forest_initial_refinement 0 -dm_forest_maximum_refinement 2 -dm_p4est_refine_pattern hash -petscpartitioner_type simple -dm_forest_print_label_error

  test:
    requires: p4est
    nsize: 2
    suffix: p4est_bug_distribute_overlap
    args: -interpolate -test_p4est_seq -conv_seq_2_dm_plex_check_all -conv_seq_1_dm_forest_minimum_refinement 0 -conv_seq_1_dm_forest_partition_overlap 0 -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 3,3 -conv_seq_1_dm_forest_initial_refinement 0 -conv_seq_1_dm_forest_maximum_refinement 2 -conv_seq_1_dm_p4est_refine_pattern hash -petscpartitioner_type simple -overlap 1 -dm_view ::load_balance
    args: -dm_post_overlap_view

  test:
    suffix: glvis_2d_hyb
    args: -dim 2 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_triquad.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple

  test:
    suffix: glvis_3d_hyb
    args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_tetwedge.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple

  test:
    suffix: glvis_3d_hyb_s2t
    args: -dim 3 -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_3d_cube.msh -interpolate -dm_view glvis: -viewer_glvis_dm_plex_enable_boundary -petscpartitioner_type simple -dm_refine 1 -dm_plex_cell_refiner tobox -dm_plex_check_all

  test:
    suffix: ref_alfeld2d_0
    requires: triangle
    args: -dim 2 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner alfeld2d -final_diagnostics
  test:
    suffix: ref_alfeld3d_0
    requires: ctetgen
    args: -dim 3 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all -dm_refine 1 -dm_plex_cell_refiner alfeld3d -final_diagnostics

  # Boundary layer refiners
  test:
    suffix: ref_bl_1
    args: -dim 1 -domain_shape box -cell_simplex 0 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 2 -final_diagnostics -dm_plex_refine_boundarylayer_splits 3 -ext_hfirst {{0 1}}
  test:
    suffix: ref_bl_2_tri
    requires: triangle
    args: -dim 2 -domain_shape box -cell_simplex 1 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 3 -final_diagnostics -dm_plex_refine_boundarylayer_splits 4 -ext_hfirst {{0 1}}
  test:
    suffix: ref_bl_3_quad
    args: -dim 2 -domain_shape box -cell_simplex 0 -domain_box_sizes 5 -dm_view -interpolate -dm_plex_check_all 0 -dm_refine 1 -dm_plex_cell_refiner boundarylayer -ext_layers 3 -final_diagnostics -dm_plex_refine_boundarylayer_splits 4 -ext_hfirst {{0 1}}
  test:
    suffix: ref_bl_spheresurface_extruded
    nsize : 4
    args: -ext_layers 3 -ext_filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/surfacesphere_bin.msh -dm_plex_gmsh_spacedim 3 -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple -ext_hfirst {{0 1}separate output} -final_diagnostics -dm_refine 1 -dm_plex_cell_refiner boundarylayer -dm_plex_refine_boundarylayer_splits 2
  test:
    suffix: ref_bl_3d_hyb
    nsize : 4
    args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/hybrid_3d_cube.msh -dm_plex_check_all -dm_view -interpolate -petscpartitioner_type simple -final_diagnostics -dm_refine 1 -dm_plex_cell_refiner boundarylayer -dm_plex_refine_boundarylayer_splits 4 -dm_plex_refine_boundarylayer_progression 3.1

  test:
    suffix: sphere_0
    args: -dim 2 -domain_shape sphere -dm_plex_check_all -dm_view ::ascii_info_detail

  test:
    suffix: sphere_1
    args: -dim 2 -domain_shape sphere -dm_plex_check_all -dm_refine 2 -dm_view

  test:
    suffix: ball_0
    requires: ctetgen
    args: -dim 3 -domain_shape ball -dm_plex_check_all -dm_view

  test:
    suffix: ball_1
    requires: ctetgen
    args: -dim 3 -domain_shape ball -bd_dm_refine 2 -dm_plex_check_all -dm_view

TEST*/