1c4762a1bSJed Brown static char help[] = "Tests for parallel mesh loading and parallel topological interpolation\n\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown #include <petsc/private/dmpleximpl.h> 4c4762a1bSJed Brown /* List of test meshes 5c4762a1bSJed Brown 6c4762a1bSJed Brown Network 7c4762a1bSJed Brown ------- 8c4762a1bSJed Brown Test 0 (2 ranks): 9c4762a1bSJed Brown 10c4762a1bSJed Brown network=0: 11c4762a1bSJed Brown --------- 12c4762a1bSJed Brown cell 0 cell 1 cell 2 nCells-1 (edge) 13c4762a1bSJed Brown 0 ------ 1 ------ 2 ------ 3 -- -- v -- -- nCells (vertex) 14c4762a1bSJed Brown 15c4762a1bSJed Brown vertex distribution: 16c4762a1bSJed Brown rank 0: 0 1 17c4762a1bSJed Brown rank 1: 2 3 ... nCells 18c4762a1bSJed Brown cell(edge) distribution: 19c4762a1bSJed Brown rank 0: 0 1 20c4762a1bSJed Brown rank 1: 2 ... nCells-1 21c4762a1bSJed Brown 22c4762a1bSJed Brown network=1: 23c4762a1bSJed Brown --------- 24c4762a1bSJed Brown v2 25c4762a1bSJed Brown ^ 26c4762a1bSJed Brown | 27c4762a1bSJed Brown cell 2 28c4762a1bSJed Brown | 29c4762a1bSJed Brown v0 --cell 0--> v3--cell 1--> v1 30c4762a1bSJed Brown 31c4762a1bSJed Brown vertex distribution: 32c4762a1bSJed Brown rank 0: 0 1 3 33c4762a1bSJed Brown rank 1: 2 34c4762a1bSJed Brown cell(edge) distribution: 35c4762a1bSJed Brown rank 0: 0 1 36c4762a1bSJed Brown rank 1: 2 37c4762a1bSJed Brown 38c4762a1bSJed Brown example: 39c4762a1bSJed Brown mpiexec -n 2 ./ex18 -distribute 1 -dim 1 -orig_dm_view -dist_dm_view -dist_dm_view -petscpartitioner_type parmetis -ncells 50 40c4762a1bSJed Brown 41c4762a1bSJed Brown Triangle 42c4762a1bSJed Brown -------- 43c4762a1bSJed Brown Test 0 (2 ranks): 44c4762a1bSJed Brown Two triangles sharing a face 45c4762a1bSJed Brown 46c4762a1bSJed Brown 2 47c4762a1bSJed Brown / | \ 48c4762a1bSJed Brown / | \ 49c4762a1bSJed Brown / | \ 50c4762a1bSJed Brown 0 0 | 1 3 51c4762a1bSJed Brown \ | / 52c4762a1bSJed Brown \ | / 53c4762a1bSJed Brown \ | / 54c4762a1bSJed Brown 1 55c4762a1bSJed Brown 56c4762a1bSJed Brown vertex distribution: 57c4762a1bSJed Brown rank 0: 0 1 58c4762a1bSJed Brown rank 1: 2 3 59c4762a1bSJed Brown cell distribution: 60c4762a1bSJed Brown rank 0: 0 61c4762a1bSJed Brown rank 1: 1 62c4762a1bSJed Brown 63c4762a1bSJed Brown Test 1 (3 ranks): 64c4762a1bSJed Brown Four triangles partitioned across 3 ranks 65c4762a1bSJed Brown 66c4762a1bSJed Brown 0 _______ 3 67c4762a1bSJed Brown | \ / | 68c4762a1bSJed Brown | \ 1 / | 69c4762a1bSJed Brown | \ / | 70c4762a1bSJed Brown | 0 2 2 | 71c4762a1bSJed Brown | / \ | 72c4762a1bSJed Brown | / 3 \ | 73c4762a1bSJed Brown | / \ | 74c4762a1bSJed Brown 1 ------- 4 75c4762a1bSJed Brown 76c4762a1bSJed Brown vertex distribution: 77c4762a1bSJed Brown rank 0: 0 1 78c4762a1bSJed Brown rank 1: 2 3 79c4762a1bSJed Brown rank 2: 4 80c4762a1bSJed Brown cell distribution: 81c4762a1bSJed Brown rank 0: 0 82c4762a1bSJed Brown rank 1: 1 83c4762a1bSJed Brown rank 2: 2 3 84c4762a1bSJed Brown 85c4762a1bSJed Brown Test 2 (3 ranks): 86c4762a1bSJed Brown Four triangles partitioned across 3 ranks 87c4762a1bSJed Brown 88c4762a1bSJed Brown 1 _______ 3 89c4762a1bSJed Brown | \ / | 90c4762a1bSJed Brown | \ 1 / | 91c4762a1bSJed Brown | \ / | 92c4762a1bSJed Brown | 0 0 2 | 93c4762a1bSJed Brown | / \ | 94c4762a1bSJed Brown | / 3 \ | 95c4762a1bSJed Brown | / \ | 96c4762a1bSJed Brown 2 ------- 4 97c4762a1bSJed Brown 98c4762a1bSJed Brown vertex distribution: 99c4762a1bSJed Brown rank 0: 0 1 100c4762a1bSJed Brown rank 1: 2 3 101c4762a1bSJed Brown rank 2: 4 102c4762a1bSJed Brown cell distribution: 103c4762a1bSJed Brown rank 0: 0 104c4762a1bSJed Brown rank 1: 1 105c4762a1bSJed Brown rank 2: 2 3 106c4762a1bSJed Brown 107c4762a1bSJed Brown Tetrahedron 108c4762a1bSJed Brown ----------- 109c4762a1bSJed Brown Test 0: 110c4762a1bSJed Brown Two tets sharing a face 111c4762a1bSJed Brown 112c4762a1bSJed Brown cell 3 _______ cell 113c4762a1bSJed Brown 0 / | \ \ 1 114c4762a1bSJed Brown / | \ \ 115c4762a1bSJed Brown / | \ \ 116c4762a1bSJed Brown 0----|----4-----2 117c4762a1bSJed Brown \ | / / 118c4762a1bSJed Brown \ | / / 119c4762a1bSJed Brown \ | / / 120c4762a1bSJed Brown 1------- 121c4762a1bSJed Brown y 122c4762a1bSJed Brown | x 123c4762a1bSJed Brown |/ 124c4762a1bSJed Brown *----z 125c4762a1bSJed Brown 126c4762a1bSJed Brown vertex distribution: 127c4762a1bSJed Brown rank 0: 0 1 128c4762a1bSJed Brown rank 1: 2 3 4 129c4762a1bSJed Brown cell distribution: 130c4762a1bSJed Brown rank 0: 0 131c4762a1bSJed Brown rank 1: 1 132c4762a1bSJed Brown 133c4762a1bSJed Brown Quadrilateral 134c4762a1bSJed Brown ------------- 135c4762a1bSJed Brown Test 0 (2 ranks): 136c4762a1bSJed Brown Two quads sharing a face 137c4762a1bSJed Brown 138c4762a1bSJed Brown 3-------2-------5 139c4762a1bSJed Brown | | | 140c4762a1bSJed Brown | 0 | 1 | 141c4762a1bSJed Brown | | | 142c4762a1bSJed Brown 0-------1-------4 143c4762a1bSJed Brown 144c4762a1bSJed Brown vertex distribution: 145c4762a1bSJed Brown rank 0: 0 1 2 146c4762a1bSJed Brown rank 1: 3 4 5 147c4762a1bSJed Brown cell distribution: 148c4762a1bSJed Brown rank 0: 0 149c4762a1bSJed Brown rank 1: 1 150c4762a1bSJed Brown 151c4762a1bSJed Brown TODO Test 1: 152c4762a1bSJed Brown A quad and a triangle sharing a face 153c4762a1bSJed Brown 154c4762a1bSJed Brown 5-------4 155c4762a1bSJed Brown | | \ 156c4762a1bSJed Brown | 0 | \ 157c4762a1bSJed Brown | | 1 \ 158c4762a1bSJed Brown 2-------3----6 159c4762a1bSJed Brown 160c4762a1bSJed Brown Hexahedron 161c4762a1bSJed Brown ---------- 162c4762a1bSJed Brown Test 0 (2 ranks): 163c4762a1bSJed Brown Two hexes sharing a face 164c4762a1bSJed Brown 165c4762a1bSJed Brown cell 7-------------6-------------11 cell 166c4762a1bSJed Brown 0 /| /| /| 1 167c4762a1bSJed Brown / | F1 / | F7 / | 168c4762a1bSJed Brown / | / | / | 169c4762a1bSJed Brown 4-------------5-------------10 | 170c4762a1bSJed Brown | | F4 | | F10 | | 171c4762a1bSJed Brown | | | | | | 172c4762a1bSJed Brown |F5 | |F3 | |F9 | 173c4762a1bSJed Brown | | F2 | | F8 | | 174c4762a1bSJed Brown | 3---------|---2---------|---9 175c4762a1bSJed Brown | / | / | / 176c4762a1bSJed Brown | / F0 | / F6 | / 177c4762a1bSJed Brown |/ |/ |/ 178c4762a1bSJed Brown 0-------------1-------------8 179c4762a1bSJed Brown 180c4762a1bSJed Brown vertex distribution: 181c4762a1bSJed Brown rank 0: 0 1 2 3 4 5 182c4762a1bSJed Brown rank 1: 6 7 8 9 10 11 183c4762a1bSJed Brown cell distribution: 184c4762a1bSJed Brown rank 0: 0 185c4762a1bSJed Brown rank 1: 1 186c4762a1bSJed Brown 187c4762a1bSJed Brown */ 188c4762a1bSJed Brown 189c4762a1bSJed Brown typedef enum {NONE, CREATE, AFTER_CREATE, AFTER_DISTRIBUTE} InterpType; 190c4762a1bSJed Brown 191c4762a1bSJed Brown typedef struct { 192c4762a1bSJed Brown PetscInt debug; /* The debugging level */ 193c4762a1bSJed Brown PetscInt testNum; /* Indicates the mesh to create */ 194c4762a1bSJed Brown PetscInt dim; /* The topological mesh dimension */ 195c4762a1bSJed Brown PetscBool cellSimplex; /* Use simplices or hexes */ 196c4762a1bSJed Brown PetscBool distribute; /* Distribute the mesh */ 197c4762a1bSJed Brown InterpType interpolate; /* Interpolate the mesh before or after DMPlexDistribute() */ 198c4762a1bSJed Brown PetscBool useGenerator; /* Construct mesh with a mesh generator */ 199c4762a1bSJed Brown PetscBool testOrientIF; /* Test for different original interface orientations */ 200c4762a1bSJed Brown PetscBool testHeavy; /* Run the heavy PointSF test */ 201c4762a1bSJed Brown PetscBool customView; /* Show results of DMPlexIsInterpolated() etc. */ 202c4762a1bSJed Brown PetscInt ornt[2]; /* Orientation of interface on rank 0 and rank 1 */ 203c4762a1bSJed Brown PetscInt faces[3]; /* Number of faces per dimension for generator */ 204d3e1f4ccSVaclav Hapla PetscScalar coords[128]; 205c4762a1bSJed Brown PetscReal coordsTol; 206c4762a1bSJed Brown PetscInt ncoords; 207c4762a1bSJed Brown PetscInt pointsToExpand[128]; 208c4762a1bSJed Brown PetscInt nPointsToExpand; 209c4762a1bSJed Brown PetscBool testExpandPointsEmpty; 210c4762a1bSJed Brown char filename[PETSC_MAX_PATH_LEN]; /* Import mesh from file */ 211c4762a1bSJed Brown } AppCtx; 212c4762a1bSJed Brown 213c4762a1bSJed Brown struct _n_PortableBoundary { 214c4762a1bSJed Brown Vec coordinates; 215c4762a1bSJed Brown PetscInt depth; 216c4762a1bSJed Brown PetscSection *sections; 217c4762a1bSJed Brown }; 218c4762a1bSJed Brown typedef struct _n_PortableBoundary * PortableBoundary; 219c4762a1bSJed Brown 220956f8c0dSBarry Smith #if defined(PETSC_USE_LOG) 221c4762a1bSJed Brown static PetscLogStage stage[3]; 222956f8c0dSBarry Smith #endif 223c4762a1bSJed Brown 224c4762a1bSJed Brown static PetscErrorCode DMPlexCheckPointSFHeavy(DM, PortableBoundary); 225c4762a1bSJed Brown static PetscErrorCode DMPlexSetOrientInterface_Private(DM,PetscBool); 226c4762a1bSJed Brown static PetscErrorCode DMPlexGetExpandedBoundary_Private(DM, PortableBoundary *); 227c4762a1bSJed Brown static PetscErrorCode DMPlexExpandedConesToFaces_Private(DM, IS, PetscSection, IS *); 228c4762a1bSJed Brown 229c4762a1bSJed Brown static PetscErrorCode PortableBoundaryDestroy(PortableBoundary *bnd) 230c4762a1bSJed Brown { 231c4762a1bSJed Brown PetscInt d; 232c4762a1bSJed Brown 233c4762a1bSJed Brown PetscFunctionBegin; 234c4762a1bSJed Brown if (!*bnd) PetscFunctionReturn(0); 2359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*bnd)->coordinates)); 236c4762a1bSJed Brown for (d=0; d < (*bnd)->depth; d++) { 2379566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*bnd)->sections[d])); 238c4762a1bSJed Brown } 2399566063dSJacob Faibussowitsch PetscCall(PetscFree((*bnd)->sections)); 2409566063dSJacob Faibussowitsch PetscCall(PetscFree(*bnd)); 241c4762a1bSJed Brown PetscFunctionReturn(0); 242c4762a1bSJed Brown } 243c4762a1bSJed Brown 244c4762a1bSJed Brown static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 245c4762a1bSJed Brown { 246c4762a1bSJed Brown const char *interpTypes[4] = {"none", "create", "after_create", "after_distribute"}; 247c4762a1bSJed Brown PetscInt interp=NONE, dim; 248c4762a1bSJed Brown PetscBool flg1, flg2; 249c4762a1bSJed Brown 250c4762a1bSJed Brown PetscFunctionBegin; 251c4762a1bSJed Brown options->debug = 0; 252c4762a1bSJed Brown options->testNum = 0; 253c4762a1bSJed Brown options->dim = 2; 254c4762a1bSJed Brown options->cellSimplex = PETSC_TRUE; 255c4762a1bSJed Brown options->distribute = PETSC_FALSE; 256c4762a1bSJed Brown options->interpolate = NONE; 257c4762a1bSJed Brown options->useGenerator = PETSC_FALSE; 258c4762a1bSJed Brown options->testOrientIF = PETSC_FALSE; 259c4762a1bSJed Brown options->testHeavy = PETSC_TRUE; 260c4762a1bSJed Brown options->customView = PETSC_FALSE; 261c4762a1bSJed Brown options->testExpandPointsEmpty = PETSC_FALSE; 262c4762a1bSJed Brown options->ornt[0] = 0; 263c4762a1bSJed Brown options->ornt[1] = 0; 264c4762a1bSJed Brown options->faces[0] = 2; 265c4762a1bSJed Brown options->faces[1] = 2; 266c4762a1bSJed Brown options->faces[2] = 2; 267c4762a1bSJed Brown options->filename[0] = '\0'; 268c4762a1bSJed Brown options->coordsTol = PETSC_DEFAULT; 269c4762a1bSJed Brown 270d0609cedSBarry Smith PetscOptionsBegin(comm, "", "Meshing Interpolation Test Options", "DMPLEX"); 2719566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-debug", "The debugging level", "ex18.c", options->debug, &options->debug, NULL,0)); 2729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-testnum", "The mesh to create", "ex18.c", options->testNum, &options->testNum, NULL,0)); 2739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-cell_simplex", "Generate simplices if true, otherwise hexes", "ex18.c", options->cellSimplex, &options->cellSimplex, NULL)); 2749566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-distribute", "Distribute the mesh", "ex18.c", options->distribute, &options->distribute, NULL)); 2759566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-interpolate", "Type of mesh interpolation (none, create, after_create, after_distribute)", "ex18.c", interpTypes, 4, interpTypes[options->interpolate], &interp, NULL)); 276c4762a1bSJed Brown options->interpolate = (InterpType) interp; 2771dca8a05SBarry Smith PetscCheck(options->distribute || options->interpolate != AFTER_DISTRIBUTE,comm, PETSC_ERR_SUP, "-interpolate after_distribute needs -distribute 1"); 2789566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-use_generator", "Use a mesh generator to build the mesh", "ex18.c", options->useGenerator, &options->useGenerator, NULL)); 279c4762a1bSJed Brown options->ncoords = 128; 2809566063dSJacob Faibussowitsch PetscCall(PetscOptionsScalarArray("-view_vertices_from_coords", "Print DAG points corresponding to vertices with given coordinates", "ex18.c", options->coords, &options->ncoords, NULL)); 2819566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-view_vertices_from_coords_tol", "Tolerance for -view_vertices_from_coords", "ex18.c", options->coordsTol, &options->coordsTol, NULL)); 282c4762a1bSJed Brown options->nPointsToExpand = 128; 2839566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-test_expand_points", "Expand given array of DAG point using DMPlexGetConeRecursive() and print results", "ex18.c", options->pointsToExpand, &options->nPointsToExpand, NULL)); 284c4762a1bSJed Brown if (options->nPointsToExpand) { 2859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-test_expand_points_empty", "For -test_expand_points, rank 0 will have empty input array", "ex18.c", options->testExpandPointsEmpty, &options->testExpandPointsEmpty, NULL)); 286c4762a1bSJed Brown } 2879566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-test_heavy", "Run the heavy PointSF test", "ex18.c", options->testHeavy, &options->testHeavy, NULL)); 2889566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-custom_view", "Custom DMPlex view", "ex18.c", options->customView, &options->customView, NULL)); 2899566063dSJacob Faibussowitsch PetscCall(PetscOptionsRangeInt("-dim", "The topological mesh dimension", "ex18.c", options->dim, &options->dim, &flg1,1,3)); 290c4762a1bSJed Brown dim = 3; 2919566063dSJacob Faibussowitsch PetscCall(PetscOptionsIntArray("-faces", "Number of faces per dimension", "ex18.c", options->faces, &dim, &flg2)); 292c4762a1bSJed Brown if (flg2) { 2931dca8a05SBarry Smith PetscCheck(!flg1 || dim == options->dim,comm, PETSC_ERR_ARG_OUTOFRANGE, "specified -dim %" PetscInt_FMT " is not equal to length %" PetscInt_FMT " of -faces (note that -dim can be omitted)", options->dim, dim); 294c4762a1bSJed Brown options->dim = dim; 295c4762a1bSJed Brown } 2969566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-filename", "The mesh file", "ex18.c", options->filename, options->filename, sizeof(options->filename), NULL)); 2979566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-rotate_interface_0", "Rotation (relative orientation) of interface on rank 0; implies -interpolate create -distribute 0", "ex18.c", options->ornt[0], &options->ornt[0], &options->testOrientIF,0)); 2989566063dSJacob Faibussowitsch PetscCall(PetscOptionsBoundedInt("-rotate_interface_1", "Rotation (relative orientation) of interface on rank 1; implies -interpolate create -distribute 0", "ex18.c", options->ornt[1], &options->ornt[1], &flg2,0)); 29908401ef6SPierre Jolivet PetscCheck(flg2 == options->testOrientIF,comm, PETSC_ERR_ARG_OUTOFRANGE, "neither or both -rotate_interface_0 -rotate_interface_1 must be set"); 300c4762a1bSJed Brown if (options->testOrientIF) { 301c4762a1bSJed Brown PetscInt i; 302c4762a1bSJed Brown for (i=0; i<2; i++) { 303c4762a1bSJed Brown if (options->ornt[i] >= 10) options->ornt[i] = -(options->ornt[i]-10); /* 11 12 13 become -1 -2 -3 */ 304c4762a1bSJed Brown } 305c4762a1bSJed Brown options->filename[0] = 0; 306c4762a1bSJed Brown options->useGenerator = PETSC_FALSE; 307c4762a1bSJed Brown options->dim = 3; 308c4762a1bSJed Brown options->cellSimplex = PETSC_TRUE; 309c4762a1bSJed Brown options->interpolate = CREATE; 310c4762a1bSJed Brown options->distribute = PETSC_FALSE; 311c4762a1bSJed Brown } 312d0609cedSBarry Smith PetscOptionsEnd(); 313c4762a1bSJed Brown PetscFunctionReturn(0); 314c4762a1bSJed Brown } 315c4762a1bSJed Brown 316c4762a1bSJed Brown static PetscErrorCode CreateMesh_1D(MPI_Comm comm, PetscBool interpolate, AppCtx *user, DM *dm) 317c4762a1bSJed Brown { 318c4762a1bSJed Brown PetscInt testNum = user->testNum; 319c4762a1bSJed Brown PetscMPIInt rank,size; 320c4762a1bSJed Brown PetscInt numCorners=2,i; 321c4762a1bSJed Brown PetscInt numCells,numVertices,network; 322a4a685f2SJacob Faibussowitsch PetscInt *cells; 323c4762a1bSJed Brown PetscReal *coords; 324c4762a1bSJed Brown 325c4762a1bSJed Brown PetscFunctionBegin; 3269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 32863a3b9bcSJacob Faibussowitsch PetscCheck(size <= 2,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for <=2 processes",testNum); 329c4762a1bSJed Brown 330c4762a1bSJed Brown numCells = 3; 3319566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-ncells", &numCells, NULL)); 33263a3b9bcSJacob Faibussowitsch PetscCheck(numCells >= 3,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test ncells %" PetscInt_FMT " must >=3",numCells); 333c4762a1bSJed Brown 334c4762a1bSJed Brown if (size == 1) { 335c4762a1bSJed Brown numVertices = numCells + 1; 3369566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*numCells,&cells,2*numVertices,&coords)); 337c4762a1bSJed Brown for (i=0; i<numCells; i++) { 338c4762a1bSJed Brown cells[2*i] = i; cells[2*i+1] = i + 1; 33971bbd31fSVaclav Hapla coords[2*i] = i; coords[2*i+1] = i + 1; 340c4762a1bSJed Brown } 341c4762a1bSJed Brown 3429566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListPetsc(comm, user->dim, numCells, numVertices, numCorners, PETSC_FALSE, cells, user->dim, coords, dm)); 3439566063dSJacob Faibussowitsch PetscCall(PetscFree2(cells,coords)); 344c4762a1bSJed Brown PetscFunctionReturn(0); 345c4762a1bSJed Brown } 346c4762a1bSJed Brown 347c4762a1bSJed Brown network = 0; 3489566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-network_case", &network, NULL)); 349c4762a1bSJed Brown if (network == 0) { 350c4762a1bSJed Brown switch (rank) { 351c4762a1bSJed Brown case 0: 352c4762a1bSJed Brown { 353c4762a1bSJed Brown numCells = 2; 354c4762a1bSJed Brown numVertices = numCells; 3559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*numCells,&cells,2*numCells,&coords)); 356c4762a1bSJed Brown cells[0] = 0; cells[1] = 1; 357c4762a1bSJed Brown cells[2] = 1; cells[3] = 2; 358c4762a1bSJed Brown coords[0] = 0.; coords[1] = 1.; 359c4762a1bSJed Brown coords[2] = 1.; coords[3] = 2.; 360c4762a1bSJed Brown } 361c4762a1bSJed Brown break; 362c4762a1bSJed Brown case 1: 363c4762a1bSJed Brown { 364c4762a1bSJed Brown numCells -= 2; 365c4762a1bSJed Brown numVertices = numCells + 1; 3669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*numCells,&cells,2*numCells,&coords)); 367c4762a1bSJed Brown for (i=0; i<numCells; i++) { 368c4762a1bSJed Brown cells[2*i] = 2+i; cells[2*i+1] = 2 + i + 1; 369c4762a1bSJed Brown coords[2*i] = 2+i; coords[2*i+1] = 2 + i + 1; 370c4762a1bSJed Brown } 371c4762a1bSJed Brown } 372c4762a1bSJed Brown break; 37398921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 374c4762a1bSJed Brown } 375c4762a1bSJed Brown } else { /* network_case = 1 */ 376c4762a1bSJed Brown /* ----------------------- */ 377c4762a1bSJed Brown switch (rank) { 378c4762a1bSJed Brown case 0: 379c4762a1bSJed Brown { 380c4762a1bSJed Brown numCells = 2; 381c4762a1bSJed Brown numVertices = 3; 3829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*numCells,&cells,2*numCells,&coords)); 383c4762a1bSJed Brown cells[0] = 0; cells[1] = 3; 384c4762a1bSJed Brown cells[2] = 3; cells[3] = 1; 385c4762a1bSJed Brown } 386c4762a1bSJed Brown break; 387c4762a1bSJed Brown case 1: 388c4762a1bSJed Brown { 389c4762a1bSJed Brown numCells = 1; 390c4762a1bSJed Brown numVertices = 1; 3919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(2*numCells,&cells,2*numCells,&coords)); 392c4762a1bSJed Brown cells[0] = 3; cells[1] = 2; 393c4762a1bSJed Brown } 394c4762a1bSJed Brown break; 39598921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 396c4762a1bSJed Brown } 397c4762a1bSJed Brown } 3989566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, PETSC_FALSE, cells, user->dim, coords, NULL, NULL, dm)); 3999566063dSJacob Faibussowitsch PetscCall(PetscFree2(cells,coords)); 400c4762a1bSJed Brown PetscFunctionReturn(0); 401c4762a1bSJed Brown } 402c4762a1bSJed Brown 403c4762a1bSJed Brown static PetscErrorCode CreateSimplex_2D(MPI_Comm comm, PetscBool interpolate, AppCtx *user, DM *dm) 404c4762a1bSJed Brown { 405c4762a1bSJed Brown PetscInt testNum = user->testNum, p; 406c4762a1bSJed Brown PetscMPIInt rank, size; 407c4762a1bSJed Brown 408c4762a1bSJed Brown PetscFunctionBegin; 4099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 4109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 411c4762a1bSJed Brown switch (testNum) { 412c4762a1bSJed Brown case 0: 41363a3b9bcSJacob Faibussowitsch PetscCheck(size == 2,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 2 processes", testNum); 414c4762a1bSJed Brown switch (rank) { 415c4762a1bSJed Brown case 0: 416c4762a1bSJed Brown { 417c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 418a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {0, 1, 2}; 419c4762a1bSJed Brown PetscReal coords[4] = {-0.5, 0.5, 0.0, 0.0}; 420c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 421c4762a1bSJed Brown 4229566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4239566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 424c4762a1bSJed Brown } 425c4762a1bSJed Brown break; 426c4762a1bSJed Brown case 1: 427c4762a1bSJed Brown { 428c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 429a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {1, 3, 2}; 430c4762a1bSJed Brown PetscReal coords[4] = {0.0, 1.0, 0.5, 0.5}; 431c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 432c4762a1bSJed Brown 4339566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4349566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 435c4762a1bSJed Brown } 436c4762a1bSJed Brown break; 43798921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 438c4762a1bSJed Brown } 439c4762a1bSJed Brown break; 440c4762a1bSJed Brown case 1: 44163a3b9bcSJacob Faibussowitsch PetscCheck(size == 3,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 3 processes", testNum); 442c4762a1bSJed Brown switch (rank) { 443c4762a1bSJed Brown case 0: 444c4762a1bSJed Brown { 445c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 446a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {0, 1, 2}; 447c4762a1bSJed Brown PetscReal coords[4] = {0.0, 1.0, 0.0, 0.0}; 448c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 449c4762a1bSJed Brown 4509566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4519566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 452c4762a1bSJed Brown } 453c4762a1bSJed Brown break; 454c4762a1bSJed Brown case 1: 455c4762a1bSJed Brown { 456c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 457a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {0, 2, 3}; 458c4762a1bSJed Brown PetscReal coords[4] = {0.5, 0.5, 1.0, 1.0}; 459c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 460c4762a1bSJed Brown 4619566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4629566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 463c4762a1bSJed Brown } 464c4762a1bSJed Brown break; 465c4762a1bSJed Brown case 2: 466c4762a1bSJed Brown { 467c4762a1bSJed Brown const PetscInt numCells = 2, numVertices = 1, numCorners = 3; 468a4a685f2SJacob Faibussowitsch const PetscInt cells[6] = {2, 4, 3, 2, 1, 4}; 469c4762a1bSJed Brown PetscReal coords[2] = {1.0, 0.0}; 470c4762a1bSJed Brown PetscInt markerPoints[10] = {2, 1, 3, 1, 4, 1, 5, 1, 6, 1}; 471c4762a1bSJed Brown 4729566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4739566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 474c4762a1bSJed Brown } 475c4762a1bSJed Brown break; 47698921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 477c4762a1bSJed Brown } 478c4762a1bSJed Brown break; 479c4762a1bSJed Brown case 2: 48063a3b9bcSJacob Faibussowitsch PetscCheck(size == 3,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 3 processes", testNum); 481c4762a1bSJed Brown switch (rank) { 482c4762a1bSJed Brown case 0: 483c4762a1bSJed Brown { 484c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 485a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {1, 2, 0}; 486c4762a1bSJed Brown PetscReal coords[4] = {0.5, 0.5, 0.0, 1.0}; 487c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 488c4762a1bSJed Brown 4899566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 4909566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 491c4762a1bSJed Brown } 492c4762a1bSJed Brown break; 493c4762a1bSJed Brown case 1: 494c4762a1bSJed Brown { 495c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 3; 496a4a685f2SJacob Faibussowitsch const PetscInt cells[3] = {1, 0, 3}; 497c4762a1bSJed Brown PetscReal coords[4] = {0.0, 0.0, 1.0, 1.0}; 498c4762a1bSJed Brown PetscInt markerPoints[6] = {1, 1, 2, 1, 3, 1}; 499c4762a1bSJed Brown 5009566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 5019566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 502c4762a1bSJed Brown } 503c4762a1bSJed Brown break; 504c4762a1bSJed Brown case 2: 505c4762a1bSJed Brown { 506c4762a1bSJed Brown const PetscInt numCells = 2, numVertices = 1, numCorners = 3; 507a4a685f2SJacob Faibussowitsch const PetscInt cells[6] = {0, 4, 3, 0, 2, 4}; 508c4762a1bSJed Brown PetscReal coords[2] = {1.0, 0.0}; 509c4762a1bSJed Brown PetscInt markerPoints[10] = {2, 1, 3, 1, 4, 1, 5, 1, 6, 1}; 510c4762a1bSJed Brown 5119566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 5129566063dSJacob Faibussowitsch for (p = 0; p < 3; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 513c4762a1bSJed Brown } 514c4762a1bSJed Brown break; 51598921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 516c4762a1bSJed Brown } 517c4762a1bSJed Brown break; 51863a3b9bcSJacob Faibussowitsch default: SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh %" PetscInt_FMT, testNum); 519c4762a1bSJed Brown } 520c4762a1bSJed Brown PetscFunctionReturn(0); 521c4762a1bSJed Brown } 522c4762a1bSJed Brown 523c4762a1bSJed Brown static PetscErrorCode CreateSimplex_3D(MPI_Comm comm, PetscBool interpolate, AppCtx *user, DM *dm) 524c4762a1bSJed Brown { 525c4762a1bSJed Brown PetscInt testNum = user->testNum, p; 526c4762a1bSJed Brown PetscMPIInt rank, size; 527c4762a1bSJed Brown 528c4762a1bSJed Brown PetscFunctionBegin; 5299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 531c4762a1bSJed Brown switch (testNum) { 532c4762a1bSJed Brown case 0: 53363a3b9bcSJacob Faibussowitsch PetscCheck(size == 2,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 2 processes", testNum); 534c4762a1bSJed Brown switch (rank) { 535c4762a1bSJed Brown case 0: 536c4762a1bSJed Brown { 537c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 2, numCorners = 4; 538a4a685f2SJacob Faibussowitsch const PetscInt cells[4] = {0, 2, 1, 3}; 539c4762a1bSJed Brown PetscReal coords[6] = {0.0, 0.0, -0.5, 0.0, -0.5, 0.0}; 540c4762a1bSJed Brown PetscInt markerPoints[8] = {1, 1, 2, 1, 3, 1, 4, 1}; 541c4762a1bSJed Brown 5429566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 5439566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 544c4762a1bSJed Brown } 545c4762a1bSJed Brown break; 546c4762a1bSJed Brown case 1: 547c4762a1bSJed Brown { 548c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 3, numCorners = 4; 549a4a685f2SJacob Faibussowitsch const PetscInt cells[4] = {1, 2, 4, 3}; 550c4762a1bSJed Brown PetscReal coords[9] = {1.0, 0.0, 0.0, 0.0, 0.5, 0.0, 0.0, 0.0, 0.5}; 551c4762a1bSJed Brown PetscInt markerPoints[8] = {1, 1, 2, 1, 3, 1, 4, 1}; 552c4762a1bSJed Brown 5539566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 5549566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 555c4762a1bSJed Brown } 556c4762a1bSJed Brown break; 55798921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 558c4762a1bSJed Brown } 559c4762a1bSJed Brown break; 56063a3b9bcSJacob Faibussowitsch default: SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh %" PetscInt_FMT, testNum); 561c4762a1bSJed Brown } 562c4762a1bSJed Brown if (user->testOrientIF) { 563c4762a1bSJed Brown PetscInt ifp[] = {8, 6}; 564c4762a1bSJed Brown 5659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Mesh before orientation")); 5669566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-before_orientation_dm_view")); 567c4762a1bSJed Brown /* rotate interface face ifp[rank] by given orientation ornt[rank] */ 5689566063dSJacob Faibussowitsch PetscCall(DMPlexOrientPoint(*dm, ifp[rank], user->ornt[rank])); 5699566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-before_orientation_dm_view")); 5709566063dSJacob Faibussowitsch PetscCall(DMPlexCheckFaces(*dm, 0)); 5719566063dSJacob Faibussowitsch PetscCall(DMPlexOrientInterface_Internal(*dm)); 5729566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "Orientation test PASSED\n")); 573c4762a1bSJed Brown } 574c4762a1bSJed Brown PetscFunctionReturn(0); 575c4762a1bSJed Brown } 576c4762a1bSJed Brown 577c4762a1bSJed Brown static PetscErrorCode CreateQuad_2D(MPI_Comm comm, PetscBool interpolate, AppCtx *user, DM *dm) 578c4762a1bSJed Brown { 579c4762a1bSJed Brown PetscInt testNum = user->testNum, p; 580c4762a1bSJed Brown PetscMPIInt rank, size; 581c4762a1bSJed Brown 582c4762a1bSJed Brown PetscFunctionBegin; 5839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 585c4762a1bSJed Brown switch (testNum) { 586c4762a1bSJed Brown case 0: 58763a3b9bcSJacob Faibussowitsch PetscCheck(size == 2,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 2 processes", testNum); 588c4762a1bSJed Brown switch (rank) { 589c4762a1bSJed Brown case 0: 590c4762a1bSJed Brown { 591c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 3, numCorners = 4; 592a4a685f2SJacob Faibussowitsch const PetscInt cells[4] = {0, 1, 2, 3}; 593c4762a1bSJed Brown PetscReal coords[6] = {-0.5, 0.0, 0.0, 0.0, 0.0, 1.0}; 594c4762a1bSJed Brown PetscInt markerPoints[4*2] = {1, 1, 2, 1, 3, 1, 4, 1}; 595c4762a1bSJed Brown 5969566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 5979566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 598c4762a1bSJed Brown } 599c4762a1bSJed Brown break; 600c4762a1bSJed Brown case 1: 601c4762a1bSJed Brown { 602c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 3, numCorners = 4; 603a4a685f2SJacob Faibussowitsch const PetscInt cells[4] = {1, 4, 5, 2}; 604c4762a1bSJed Brown PetscReal coords[6] = {-0.5, 1.0, 0.5, 0.0, 0.5, 1.0}; 605c4762a1bSJed Brown PetscInt markerPoints[4*2] = {1, 1, 2, 1, 3, 1, 4, 1}; 606c4762a1bSJed Brown 6079566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 6089566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 609c4762a1bSJed Brown } 610c4762a1bSJed Brown break; 61198921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 612c4762a1bSJed Brown } 613c4762a1bSJed Brown break; 61463a3b9bcSJacob Faibussowitsch default: SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh %" PetscInt_FMT, testNum); 615c4762a1bSJed Brown } 616c4762a1bSJed Brown PetscFunctionReturn(0); 617c4762a1bSJed Brown } 618c4762a1bSJed Brown 619c4762a1bSJed Brown static PetscErrorCode CreateHex_3D(MPI_Comm comm, PetscBool interpolate, AppCtx *user, DM *dm) 620c4762a1bSJed Brown { 621c4762a1bSJed Brown PetscInt testNum = user->testNum, p; 622c4762a1bSJed Brown PetscMPIInt rank, size; 623c4762a1bSJed Brown 624c4762a1bSJed Brown PetscFunctionBegin; 6259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 6269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 627c4762a1bSJed Brown switch (testNum) { 628c4762a1bSJed Brown case 0: 62963a3b9bcSJacob Faibussowitsch PetscCheck(size == 2,comm, PETSC_ERR_ARG_OUTOFRANGE, "Test mesh %" PetscInt_FMT " only for 2 processes", testNum); 630c4762a1bSJed Brown switch (rank) { 631c4762a1bSJed Brown case 0: 632c4762a1bSJed Brown { 633c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 6, numCorners = 8; 634a4a685f2SJacob Faibussowitsch const PetscInt cells[8] = {0, 3, 2, 1, 4, 5, 6, 7}; 635c4762a1bSJed Brown PetscReal coords[6*3] = {-0.5,0.0,0.0, 0.0,0.0,0.0, 0.0,1.0,0.0, -0.5,1.0,0.0, -0.5,0.0,1.0, 0.0,0.0,1.0}; 636c4762a1bSJed Brown PetscInt markerPoints[8*2] = {2,1,3,1,4,1,5,1,6,1,7,1,8,1,9,1}; 637c4762a1bSJed Brown 6389566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 6399566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 640c4762a1bSJed Brown } 641c4762a1bSJed Brown break; 642c4762a1bSJed Brown case 1: 643c4762a1bSJed Brown { 644c4762a1bSJed Brown const PetscInt numCells = 1, numVertices = 6, numCorners = 8; 645a4a685f2SJacob Faibussowitsch const PetscInt cells[8] = {1, 2, 9, 8, 5, 10, 11, 6}; 646c4762a1bSJed Brown PetscReal coords[6*3] = {0.0,1.0,1.0, -0.5,1.0,1.0, 0.5,0.0,0.0, 0.5,1.0,0.0, 0.5,0.0,1.0, 0.5,1.0,1.0}; 647c4762a1bSJed Brown PetscInt markerPoints[8*2] = {2,1,3,1,4,1,5,1,6,1,7,1,8,1,9,1}; 648c4762a1bSJed Brown 6499566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromCellListParallelPetsc(comm, user->dim, numCells, numVertices, PETSC_DECIDE, numCorners, interpolate, cells, user->dim, coords, NULL, NULL, dm)); 6509566063dSJacob Faibussowitsch for (p = 0; p < 4; ++p) PetscCall(DMSetLabelValue(*dm, "marker", markerPoints[p*2], markerPoints[p*2+1])); 651c4762a1bSJed Brown } 652c4762a1bSJed Brown break; 65398921bdaSJacob Faibussowitsch default: SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh for rank %d", rank); 654c4762a1bSJed Brown } 655c4762a1bSJed Brown break; 65663a3b9bcSJacob Faibussowitsch default: SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "No test mesh %" PetscInt_FMT, testNum); 657c4762a1bSJed Brown } 658c4762a1bSJed Brown PetscFunctionReturn(0); 659c4762a1bSJed Brown } 660c4762a1bSJed Brown 661c4762a1bSJed Brown static PetscErrorCode CustomView(DM dm, PetscViewer v) 662c4762a1bSJed Brown { 663c4762a1bSJed Brown DMPlexInterpolatedFlag interpolated; 664c4762a1bSJed Brown PetscBool distributed; 665c4762a1bSJed Brown 666c4762a1bSJed Brown PetscFunctionBegin; 6679566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(dm, &distributed)); 6689566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolatedCollective(dm, &interpolated)); 6699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(v, "DMPlexIsDistributed: %s\n", PetscBools[distributed])); 6709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(v, "DMPlexIsInterpolatedCollective: %s\n", DMPlexInterpolatedFlags[interpolated])); 671c4762a1bSJed Brown PetscFunctionReturn(0); 672c4762a1bSJed Brown } 673c4762a1bSJed Brown 674c4762a1bSJed Brown static PetscErrorCode CreateMeshFromFile(MPI_Comm comm, AppCtx *user, DM *dm, DM *serialDM) 675c4762a1bSJed Brown { 676c4762a1bSJed Brown const char *filename = user->filename; 677c4762a1bSJed Brown PetscBool testHeavy = user->testHeavy; 678c4762a1bSJed Brown PetscBool interpCreate = user->interpolate == CREATE ? PETSC_TRUE : PETSC_FALSE; 679c4762a1bSJed Brown PetscBool distributed = PETSC_FALSE; 680c4762a1bSJed Brown 681c4762a1bSJed Brown PetscFunctionBegin; 682c4762a1bSJed Brown *serialDM = NULL; 6839566063dSJacob Faibussowitsch if (testHeavy && interpCreate) PetscCall(DMPlexSetOrientInterface_Private(NULL, PETSC_FALSE)); 6849566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[0])); 6859566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromFile(comm, filename, "ex18_plex", interpCreate, dm)); /* with DMPlexOrientInterface_Internal() call skipped so that PointSF issues are left to DMPlexCheckPointSFHeavy() */ 6869566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 6879566063dSJacob Faibussowitsch if (testHeavy && interpCreate) PetscCall(DMPlexSetOrientInterface_Private(NULL, PETSC_TRUE)); 6889566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(*dm, &distributed)); 6899566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "DMPlexCreateFromFile produced %s mesh.\n", distributed ? "distributed" : "serial")); 690c4762a1bSJed Brown if (testHeavy && distributed) { 6919566063dSJacob Faibussowitsch PetscCall(PetscOptionsSetValue(NULL, "-dm_plex_hdf5_force_sequential", NULL)); 6929566063dSJacob Faibussowitsch PetscCall(DMPlexCreateFromFile(comm, filename, "ex18_plex", interpCreate, serialDM)); 6939566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(*serialDM, &distributed)); 69428b400f6SJacob Faibussowitsch PetscCheck(!distributed,comm, PETSC_ERR_PLIB, "unable to create a serial DM from file"); 695c4762a1bSJed Brown } 6969566063dSJacob Faibussowitsch PetscCall(DMGetDimension(*dm, &user->dim)); 697c4762a1bSJed Brown PetscFunctionReturn(0); 698c4762a1bSJed Brown } 699c4762a1bSJed Brown 700c4762a1bSJed Brown static PetscErrorCode CreateMesh(MPI_Comm comm, AppCtx *user, DM *dm) 701c4762a1bSJed Brown { 702c4762a1bSJed Brown PetscPartitioner part; 703c4762a1bSJed Brown PortableBoundary boundary = NULL; 704c4762a1bSJed Brown DM serialDM = NULL; 705c4762a1bSJed Brown PetscBool cellSimplex = user->cellSimplex; 706c4762a1bSJed Brown PetscBool useGenerator = user->useGenerator; 707c4762a1bSJed Brown PetscBool interpCreate = user->interpolate == CREATE ? PETSC_TRUE : PETSC_FALSE; 708c4762a1bSJed Brown PetscBool interpSerial = user->interpolate == AFTER_CREATE ? PETSC_TRUE : PETSC_FALSE; 709c4762a1bSJed Brown PetscBool interpParallel = user->interpolate == AFTER_DISTRIBUTE ? PETSC_TRUE : PETSC_FALSE; 710c4762a1bSJed Brown PetscBool testHeavy = user->testHeavy; 711c4762a1bSJed Brown PetscMPIInt rank; 712c4762a1bSJed Brown 713c4762a1bSJed Brown PetscFunctionBegin; 7149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 715c4762a1bSJed Brown if (user->filename[0]) { 7169566063dSJacob Faibussowitsch PetscCall(CreateMeshFromFile(comm, user, dm, &serialDM)); 717c4762a1bSJed Brown } else if (useGenerator) { 7189566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[0])); 7199566063dSJacob Faibussowitsch PetscCall(DMPlexCreateBoxMesh(comm, user->dim, cellSimplex, user->faces, NULL, NULL, NULL, interpCreate, dm)); 7209566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 721c4762a1bSJed Brown } else { 7229566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[0])); 723c4762a1bSJed Brown switch (user->dim) { 724c4762a1bSJed Brown case 1: 7259566063dSJacob Faibussowitsch PetscCall(CreateMesh_1D(comm, interpCreate, user, dm)); 726c4762a1bSJed Brown break; 727c4762a1bSJed Brown case 2: 728c4762a1bSJed Brown if (cellSimplex) { 7299566063dSJacob Faibussowitsch PetscCall(CreateSimplex_2D(comm, interpCreate, user, dm)); 730c4762a1bSJed Brown } else { 7319566063dSJacob Faibussowitsch PetscCall(CreateQuad_2D(comm, interpCreate, user, dm)); 732c4762a1bSJed Brown } 733c4762a1bSJed Brown break; 734c4762a1bSJed Brown case 3: 735c4762a1bSJed Brown if (cellSimplex) { 7369566063dSJacob Faibussowitsch PetscCall(CreateSimplex_3D(comm, interpCreate, user, dm)); 737c4762a1bSJed Brown } else { 7389566063dSJacob Faibussowitsch PetscCall(CreateHex_3D(comm, interpCreate, user, dm)); 739c4762a1bSJed Brown } 740c4762a1bSJed Brown break; 741c4762a1bSJed Brown default: 74263a3b9bcSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_OUTOFRANGE, "Cannot make meshes for dimension %" PetscInt_FMT, user->dim); 743c4762a1bSJed Brown } 7449566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 745c4762a1bSJed Brown } 74663a3b9bcSJacob Faibussowitsch PetscCheck(user->ncoords % user->dim == 0,comm, PETSC_ERR_ARG_OUTOFRANGE, "length of coordinates array %" PetscInt_FMT " must be divisable by spatial dimension %" PetscInt_FMT, user->ncoords, user->dim); 7479566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Original Mesh")); 7489566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-orig_dm_view")); 749c4762a1bSJed Brown 750c4762a1bSJed Brown if (interpSerial) { 751c4762a1bSJed Brown DM idm; 752c4762a1bSJed Brown 7539566063dSJacob Faibussowitsch if (testHeavy) PetscCall(DMPlexSetOrientInterface_Private(*dm, PETSC_FALSE)); 7549566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[2])); 7559566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(*dm, &idm)); /* with DMPlexOrientInterface_Internal() call skipped so that PointSF issues are left to DMPlexCheckPointSFHeavy() */ 7569566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 7579566063dSJacob Faibussowitsch if (testHeavy) PetscCall(DMPlexSetOrientInterface_Private(*dm, PETSC_TRUE)); 7589566063dSJacob Faibussowitsch PetscCall(DMDestroy(dm)); 759c4762a1bSJed Brown *dm = idm; 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Interpolated Mesh")); 7619566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-intp_dm_view")); 762c4762a1bSJed Brown } 763c4762a1bSJed Brown 764c4762a1bSJed Brown /* Set partitioner options */ 7659566063dSJacob Faibussowitsch PetscCall(DMPlexGetPartitioner(*dm, &part)); 766c4762a1bSJed Brown if (part) { 7679566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetType(part, PETSCPARTITIONERSIMPLE)); 7689566063dSJacob Faibussowitsch PetscCall(PetscPartitionerSetFromOptions(part)); 769c4762a1bSJed Brown } 770c4762a1bSJed Brown 7719566063dSJacob Faibussowitsch if (user->customView) PetscCall(CustomView(*dm, PETSC_VIEWER_STDOUT_(comm))); 772c4762a1bSJed Brown if (testHeavy) { 773c4762a1bSJed Brown PetscBool distributed; 774c4762a1bSJed Brown 7759566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(*dm, &distributed)); 776c4762a1bSJed Brown if (!serialDM && !distributed) { 777c4762a1bSJed Brown serialDM = *dm; 7789566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)*dm)); 779c4762a1bSJed Brown } 780c4762a1bSJed Brown if (serialDM) { 7819566063dSJacob Faibussowitsch PetscCall(DMPlexGetExpandedBoundary_Private(serialDM, &boundary)); 782c4762a1bSJed Brown } 783c4762a1bSJed Brown if (boundary) { 784c4762a1bSJed Brown /* check DM which has been created in parallel and already interpolated */ 7859566063dSJacob Faibussowitsch PetscCall(DMPlexCheckPointSFHeavy(*dm, boundary)); 786c4762a1bSJed Brown } 787c4762a1bSJed Brown /* Orient interface because it could be deliberately skipped above. It is idempotent. */ 7889566063dSJacob Faibussowitsch PetscCall(DMPlexOrientInterface_Internal(*dm)); 789c4762a1bSJed Brown } 790c4762a1bSJed Brown if (user->distribute) { 791c4762a1bSJed Brown DM pdm = NULL; 792c4762a1bSJed Brown 793c4762a1bSJed Brown /* Redistribute mesh over processes using that partitioner */ 7949566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[1])); 7959566063dSJacob Faibussowitsch PetscCall(DMPlexDistribute(*dm, 0, NULL, &pdm)); 7969566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 797c4762a1bSJed Brown if (pdm) { 7989566063dSJacob Faibussowitsch PetscCall(DMDestroy(dm)); 799c4762a1bSJed Brown *dm = pdm; 8009566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Redistributed Mesh")); 8019566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-dist_dm_view")); 802c4762a1bSJed Brown } 803c4762a1bSJed Brown 804c4762a1bSJed Brown if (interpParallel) { 805c4762a1bSJed Brown DM idm; 806c4762a1bSJed Brown 8079566063dSJacob Faibussowitsch if (testHeavy) PetscCall(DMPlexSetOrientInterface_Private(*dm, PETSC_FALSE)); 8089566063dSJacob Faibussowitsch PetscCall(PetscLogStagePush(stage[2])); 8099566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(*dm, &idm)); /* with DMPlexOrientInterface_Internal() call skipped so that PointSF issues are left to DMPlexCheckPointSFHeavy() */ 8109566063dSJacob Faibussowitsch PetscCall(PetscLogStagePop()); 8119566063dSJacob Faibussowitsch if (testHeavy) PetscCall(DMPlexSetOrientInterface_Private(*dm, PETSC_TRUE)); 8129566063dSJacob Faibussowitsch PetscCall(DMDestroy(dm)); 813c4762a1bSJed Brown *dm = idm; 8149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Interpolated Redistributed Mesh")); 8159566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-intp_dm_view")); 816c4762a1bSJed Brown } 817c4762a1bSJed Brown } 818c4762a1bSJed Brown if (testHeavy) { 8191baa6e33SBarry Smith if (boundary) PetscCall(DMPlexCheckPointSFHeavy(*dm, boundary)); 820c4762a1bSJed Brown /* Orient interface because it could be deliberately skipped above. It is idempotent. */ 8219566063dSJacob Faibussowitsch PetscCall(DMPlexOrientInterface_Internal(*dm)); 822c4762a1bSJed Brown } 823c4762a1bSJed Brown 8249566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *dm, "Parallel Mesh")); 8259566063dSJacob Faibussowitsch PetscCall(DMPlexDistributeSetDefault(*dm, PETSC_FALSE)); 8269566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(*dm)); 8279566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-dm_view")); 828c4762a1bSJed Brown 8299566063dSJacob Faibussowitsch if (user->customView) PetscCall(CustomView(*dm, PETSC_VIEWER_STDOUT_(comm))); 8309566063dSJacob Faibussowitsch PetscCall(DMDestroy(&serialDM)); 8319566063dSJacob Faibussowitsch PetscCall(PortableBoundaryDestroy(&boundary)); 832c4762a1bSJed Brown PetscFunctionReturn(0); 833c4762a1bSJed Brown } 834c4762a1bSJed Brown 835d3e1f4ccSVaclav Hapla #define ps2d(number) ((double) PetscRealPart(number)) 8369fbee547SJacob Faibussowitsch static inline PetscErrorCode coord2str(char buf[], size_t len, PetscInt dim, const PetscScalar coords[], PetscReal tol) 837c4762a1bSJed Brown { 838c4762a1bSJed Brown PetscFunctionBegin; 83908401ef6SPierre Jolivet PetscCheck(dim <= 3,PETSC_COMM_SELF, PETSC_ERR_SUP, "dim must be less than or equal 3"); 840c4762a1bSJed Brown if (tol >= 1e-3) { 841c4762a1bSJed Brown switch (dim) { 8429566063dSJacob Faibussowitsch case 1: PetscCall(PetscSNPrintf(buf,len,"(%12.3f)",ps2d(coords[0]))); 8439566063dSJacob Faibussowitsch case 2: PetscCall(PetscSNPrintf(buf,len,"(%12.3f, %12.3f)",ps2d(coords[0]),ps2d(coords[1]))); 8449566063dSJacob Faibussowitsch case 3: PetscCall(PetscSNPrintf(buf,len,"(%12.3f, %12.3f, %12.3f)",ps2d(coords[0]),ps2d(coords[1]),ps2d(coords[2]))); 845c4762a1bSJed Brown } 846c4762a1bSJed Brown } else { 847c4762a1bSJed Brown switch (dim) { 8489566063dSJacob Faibussowitsch case 1: PetscCall(PetscSNPrintf(buf,len,"(%12.6f)",ps2d(coords[0]))); 8499566063dSJacob Faibussowitsch case 2: PetscCall(PetscSNPrintf(buf,len,"(%12.6f, %12.6f)",ps2d(coords[0]),ps2d(coords[1]))); 8509566063dSJacob Faibussowitsch case 3: PetscCall(PetscSNPrintf(buf,len,"(%12.6f, %12.6f, %12.6f)",ps2d(coords[0]),ps2d(coords[1]),ps2d(coords[2]))); 851c4762a1bSJed Brown } 852c4762a1bSJed Brown } 853c4762a1bSJed Brown PetscFunctionReturn(0); 854c4762a1bSJed Brown } 855c4762a1bSJed Brown 856d3e1f4ccSVaclav Hapla static PetscErrorCode ViewVerticesFromCoords(DM dm, Vec coordsVec, PetscReal tol, PetscViewer viewer) 857c4762a1bSJed Brown { 858d3e1f4ccSVaclav Hapla PetscInt dim, i, npoints; 859d3e1f4ccSVaclav Hapla IS pointsIS; 860d3e1f4ccSVaclav Hapla const PetscInt *points; 861d3e1f4ccSVaclav Hapla const PetscScalar *coords; 862c4762a1bSJed Brown char coordstr[128]; 863c4762a1bSJed Brown MPI_Comm comm; 864c4762a1bSJed Brown PetscMPIInt rank; 865c4762a1bSJed Brown 866c4762a1bSJed Brown PetscFunctionBegin; 8679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 8689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 8699566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 8709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8719566063dSJacob Faibussowitsch PetscCall(DMPlexFindVertices(dm, coordsVec, tol, &pointsIS)); 8729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointsIS, &points)); 8739566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointsIS, &npoints)); 8749566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(coordsVec, &coords)); 875c4762a1bSJed Brown for (i=0; i < npoints; i++) { 8769566063dSJacob Faibussowitsch PetscCall(coord2str(coordstr, sizeof(coordstr), dim, &coords[i*dim], tol)); 8779566063dSJacob Faibussowitsch if (rank == 0 && i) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "-----\n")); 87863a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %s --> points[%" PetscInt_FMT "] = %" PetscInt_FMT "\n", rank, coordstr, i, points[i])); 8799566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 880c4762a1bSJed Brown } 8819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 8829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(coordsVec, &coords)); 8839566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointsIS, &points)); 8849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointsIS)); 885c4762a1bSJed Brown PetscFunctionReturn(0); 886c4762a1bSJed Brown } 887c4762a1bSJed Brown 888c4762a1bSJed Brown static PetscErrorCode TestExpandPoints(DM dm, AppCtx *user) 889c4762a1bSJed Brown { 890c4762a1bSJed Brown IS is; 891c4762a1bSJed Brown PetscSection *sects; 892c4762a1bSJed Brown IS *iss; 893c4762a1bSJed Brown PetscInt d,depth; 894c4762a1bSJed Brown PetscMPIInt rank; 895c4762a1bSJed Brown PetscViewer viewer=PETSC_VIEWER_STDOUT_WORLD, sviewer; 896c4762a1bSJed Brown 897c4762a1bSJed Brown PetscFunctionBegin; 8989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)dm),&rank)); 899dd400576SPatrick Sanan if (user->testExpandPointsEmpty && rank == 0) { 9009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, &is)); 901c4762a1bSJed Brown } else { 9029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, user->nPointsToExpand, user->pointsToExpand, PETSC_USE_POINTER, &is)); 903c4762a1bSJed Brown } 9049566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeRecursive(dm, is, &depth, &iss, §s)); 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(sviewer, "[%d] ==========================\n",rank)); 907c4762a1bSJed Brown for (d=depth-1; d>=0; d--) { 908c4762a1bSJed Brown IS checkIS; 909c4762a1bSJed Brown PetscBool flg; 910c4762a1bSJed Brown 91163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(sviewer, "depth %" PetscInt_FMT " ---------------\n",d)); 9129566063dSJacob Faibussowitsch PetscCall(PetscSectionView(sects[d], sviewer)); 9139566063dSJacob Faibussowitsch PetscCall(ISView(iss[d], sviewer)); 914c4762a1bSJed Brown /* check reverse operation */ 915c4762a1bSJed Brown if (d < depth-1) { 9169566063dSJacob Faibussowitsch PetscCall(DMPlexExpandedConesToFaces_Private(dm, iss[d], sects[d], &checkIS)); 9179566063dSJacob Faibussowitsch PetscCall(ISEqualUnsorted(checkIS, iss[d+1], &flg)); 91828b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject) checkIS), PETSC_ERR_PLIB, "DMPlexExpandedConesToFaces_Private produced wrong IS"); 9199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&checkIS)); 920c4762a1bSJed Brown } 921c4762a1bSJed Brown } 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 9239566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9249566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreConeRecursive(dm, is, &depth, &iss, §s)); 9259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 926c4762a1bSJed Brown PetscFunctionReturn(0); 927c4762a1bSJed Brown } 928c4762a1bSJed Brown 929c4762a1bSJed Brown static PetscErrorCode DMPlexExpandedConesToFaces_Private(DM dm, IS is, PetscSection section, IS *newis) 930c4762a1bSJed Brown { 931c4762a1bSJed Brown PetscInt n,n1,ncone,numCoveredPoints,o,p,q,start,end; 932c4762a1bSJed Brown const PetscInt *coveredPoints; 933c4762a1bSJed Brown const PetscInt *arr, *cone; 934c4762a1bSJed Brown PetscInt *newarr; 935c4762a1bSJed Brown 936c4762a1bSJed Brown PetscFunctionBegin; 9379566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(is, &n)); 9389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n1)); 9399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &start, &end)); 94063a3b9bcSJacob Faibussowitsch PetscCheck(n == n1,PETSC_COMM_SELF, PETSC_ERR_PLIB, "IS size = %" PetscInt_FMT " != %" PetscInt_FMT " = section storage size", n, n1); 9419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(is, &arr)); 9429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(end-start, &newarr)); 943c4762a1bSJed Brown for (q=start; q<end; q++) { 9449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, q, &ncone)); 9459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(section, q, &o)); 946c4762a1bSJed Brown cone = &arr[o]; 947c4762a1bSJed Brown if (ncone == 1) { 948c4762a1bSJed Brown numCoveredPoints = 1; 949c4762a1bSJed Brown p = cone[0]; 950c4762a1bSJed Brown } else { 951c4762a1bSJed Brown PetscInt i; 952c4762a1bSJed Brown p = PETSC_MAX_INT; 953c4762a1bSJed Brown for (i=0; i<ncone; i++) if (cone[i] < 0) {p = -1; break;} 954c4762a1bSJed Brown if (p >= 0) { 9559566063dSJacob Faibussowitsch PetscCall(DMPlexGetJoin(dm, ncone, cone, &numCoveredPoints, &coveredPoints)); 95663a3b9bcSJacob Faibussowitsch PetscCheck(numCoveredPoints <= 1,PETSC_COMM_SELF, PETSC_ERR_PLIB, "more than one covered points for section point %" PetscInt_FMT,q); 957c4762a1bSJed Brown if (numCoveredPoints) p = coveredPoints[0]; 958c4762a1bSJed Brown else p = -2; 9599566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreJoin(dm, ncone, cone, &numCoveredPoints, &coveredPoints)); 960c4762a1bSJed Brown } 961c4762a1bSJed Brown } 962c4762a1bSJed Brown newarr[q-start] = p; 963c4762a1bSJed Brown } 9649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(is, &arr)); 9659566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, end-start, newarr, PETSC_OWN_POINTER, newis)); 966c4762a1bSJed Brown PetscFunctionReturn(0); 967c4762a1bSJed Brown } 968c4762a1bSJed Brown 969c4762a1bSJed Brown static PetscErrorCode DMPlexExpandedVerticesToFaces_Private(DM dm, IS boundary_expanded_is, PetscInt depth, PetscSection sections[], IS *boundary_is) 970c4762a1bSJed Brown { 971c4762a1bSJed Brown PetscInt d; 972c4762a1bSJed Brown IS is,newis; 973c4762a1bSJed Brown 974c4762a1bSJed Brown PetscFunctionBegin; 975c4762a1bSJed Brown is = boundary_expanded_is; 9769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)is)); 977c4762a1bSJed Brown for (d = 0; d < depth-1; ++d) { 9789566063dSJacob Faibussowitsch PetscCall(DMPlexExpandedConesToFaces_Private(dm, is, sections[d], &newis)); 9799566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is)); 980c4762a1bSJed Brown is = newis; 981c4762a1bSJed Brown } 982c4762a1bSJed Brown *boundary_is = is; 983c4762a1bSJed Brown PetscFunctionReturn(0); 984c4762a1bSJed Brown } 985c4762a1bSJed Brown 986c4762a1bSJed Brown #define CHKERRQI(incall,ierr) if (ierr) {incall = PETSC_FALSE; } 987c4762a1bSJed Brown 988c4762a1bSJed Brown static PetscErrorCode DMLabelViewFromOptionsOnComm_Private(DMLabel label, const char optionname[], MPI_Comm comm) 989c4762a1bSJed Brown { 990c4762a1bSJed Brown PetscViewer viewer; 991c4762a1bSJed Brown PetscBool flg; 992c4762a1bSJed Brown static PetscBool incall = PETSC_FALSE; 993c4762a1bSJed Brown PetscViewerFormat format; 994c4762a1bSJed Brown 995c4762a1bSJed Brown PetscFunctionBegin; 996c4762a1bSJed Brown if (incall) PetscFunctionReturn(0); 997c4762a1bSJed Brown incall = PETSC_TRUE; 9985f80ce2aSJacob Faibussowitsch CHKERRQI(incall,PetscOptionsGetViewer(comm,((PetscObject)label)->options,((PetscObject)label)->prefix,optionname,&viewer,&format,&flg)); 999c4762a1bSJed Brown if (flg) { 10005f80ce2aSJacob Faibussowitsch CHKERRQI(incall,PetscViewerPushFormat(viewer,format)); 10015f80ce2aSJacob Faibussowitsch CHKERRQI(incall,DMLabelView(label, viewer)); 10025f80ce2aSJacob Faibussowitsch CHKERRQI(incall,PetscViewerPopFormat(viewer)); 10035f80ce2aSJacob Faibussowitsch CHKERRQI(incall,PetscViewerDestroy(&viewer)); 1004c4762a1bSJed Brown } 1005c4762a1bSJed Brown incall = PETSC_FALSE; 1006c4762a1bSJed Brown PetscFunctionReturn(0); 1007c4762a1bSJed Brown } 1008c4762a1bSJed Brown 1009c4762a1bSJed Brown /* TODO: this is hotfixing DMLabelGetStratumIS() - it should be fixed systematically instead */ 10109fbee547SJacob Faibussowitsch static inline PetscErrorCode DMLabelGetStratumISOnComm_Private(DMLabel label, PetscInt value, MPI_Comm comm, IS *is) 1011c4762a1bSJed Brown { 1012c4762a1bSJed Brown IS tmpis; 1013c4762a1bSJed Brown 1014c4762a1bSJed Brown PetscFunctionBegin; 10159566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &tmpis)); 10169566063dSJacob Faibussowitsch if (!tmpis) PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, &tmpis)); 10179566063dSJacob Faibussowitsch PetscCall(ISOnComm(tmpis, comm, PETSC_COPY_VALUES, is)); 10189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&tmpis)); 1019c4762a1bSJed Brown PetscFunctionReturn(0); 1020c4762a1bSJed Brown } 1021c4762a1bSJed Brown 1022c4762a1bSJed Brown /* currently only for simple PetscSection without fields or constraints */ 1023c4762a1bSJed Brown static PetscErrorCode PetscSectionReplicate_Private(MPI_Comm comm, PetscMPIInt rootrank, PetscSection sec0, PetscSection *secout) 1024c4762a1bSJed Brown { 1025c4762a1bSJed Brown PetscSection sec; 1026c4762a1bSJed Brown PetscInt chart[2], p; 1027c4762a1bSJed Brown PetscInt *dofarr; 1028c4762a1bSJed Brown PetscMPIInt rank; 1029c4762a1bSJed Brown 1030c4762a1bSJed Brown PetscFunctionBegin; 10319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1032c4762a1bSJed Brown if (rank == rootrank) { 10339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sec0, &chart[0], &chart[1])); 1034c4762a1bSJed Brown } 10359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(chart, 2, MPIU_INT, rootrank, comm)); 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(chart[1]-chart[0], &dofarr)); 1037c4762a1bSJed Brown if (rank == rootrank) { 1038c4762a1bSJed Brown for (p = chart[0]; p < chart[1]; p++) { 10399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sec0, p, &dofarr[p-chart[0]])); 1040c4762a1bSJed Brown } 1041c4762a1bSJed Brown } 10429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(dofarr, chart[1]-chart[0], MPIU_INT, rootrank, comm)); 10439566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(comm, &sec)); 10449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(sec, chart[0], chart[1])); 1045c4762a1bSJed Brown for (p = chart[0]; p < chart[1]; p++) { 10469566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(sec, p, dofarr[p-chart[0]])); 1047c4762a1bSJed Brown } 10489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(sec)); 10499566063dSJacob Faibussowitsch PetscCall(PetscFree(dofarr)); 1050c4762a1bSJed Brown *secout = sec; 1051c4762a1bSJed Brown PetscFunctionReturn(0); 1052c4762a1bSJed Brown } 1053c4762a1bSJed Brown 1054c4762a1bSJed Brown static PetscErrorCode DMPlexExpandedVerticesCoordinatesToFaces_Private(DM ipdm, PortableBoundary bnd, IS *face_is) 1055c4762a1bSJed Brown { 1056c4762a1bSJed Brown IS faces_expanded_is; 1057c4762a1bSJed Brown 1058c4762a1bSJed Brown PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(DMPlexFindVertices(ipdm, bnd->coordinates, 0.0, &faces_expanded_is)); 10609566063dSJacob Faibussowitsch PetscCall(DMPlexExpandedVerticesToFaces_Private(ipdm, faces_expanded_is, bnd->depth, bnd->sections, face_is)); 10619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&faces_expanded_is)); 1062c4762a1bSJed Brown PetscFunctionReturn(0); 1063c4762a1bSJed Brown } 1064c4762a1bSJed Brown 1065c4762a1bSJed Brown /* hack disabling DMPlexOrientInterface() call in DMPlexInterpolate() via -dm_plex_interpolate_orient_interfaces option */ 1066c4762a1bSJed Brown static PetscErrorCode DMPlexSetOrientInterface_Private(DM dm, PetscBool enable) 1067c4762a1bSJed Brown { 1068c4762a1bSJed Brown PetscOptions options = NULL; 1069c4762a1bSJed Brown const char *prefix = NULL; 1070c4762a1bSJed Brown const char opt[] = "-dm_plex_interpolate_orient_interfaces"; 1071c4762a1bSJed Brown char prefix_opt[512]; 1072c4762a1bSJed Brown PetscBool flg, set; 1073c4762a1bSJed Brown static PetscBool wasSetTrue = PETSC_FALSE; 1074c4762a1bSJed Brown 1075c4762a1bSJed Brown PetscFunctionBegin; 1076c4762a1bSJed Brown if (dm) { 10779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, &prefix)); 1078c4762a1bSJed Brown options = ((PetscObject)dm)->options; 1079c4762a1bSJed Brown } 10809566063dSJacob Faibussowitsch PetscCall(PetscStrcpy(prefix_opt, "-")); 10819566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix_opt, prefix, sizeof(prefix_opt))); 10829566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(prefix_opt, &opt[1], sizeof(prefix_opt))); 10839566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(options, prefix, opt, &flg, &set)); 1084c4762a1bSJed Brown if (!enable) { 1085c4762a1bSJed Brown if (set && flg) wasSetTrue = PETSC_TRUE; 10869566063dSJacob Faibussowitsch PetscCall(PetscOptionsSetValue(options, prefix_opt, "0")); 1087c4762a1bSJed Brown } else if (set && !flg) { 1088c4762a1bSJed Brown if (wasSetTrue) { 10899566063dSJacob Faibussowitsch PetscCall(PetscOptionsSetValue(options, prefix_opt, "1")); 1090c4762a1bSJed Brown } else { 1091c4762a1bSJed Brown /* default is PETSC_TRUE */ 10929566063dSJacob Faibussowitsch PetscCall(PetscOptionsClearValue(options, prefix_opt)); 1093c4762a1bSJed Brown } 1094c4762a1bSJed Brown wasSetTrue = PETSC_FALSE; 1095c4762a1bSJed Brown } 109676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 10979566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(options, prefix, opt, &flg, &set)); 10981dca8a05SBarry Smith PetscCheck(!set || flg == enable,PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "PetscOptionsSetValue did not have the desired effect"); 1099c4762a1bSJed Brown } 1100c4762a1bSJed Brown PetscFunctionReturn(0); 1101c4762a1bSJed Brown } 1102c4762a1bSJed Brown 1103c4762a1bSJed Brown /* get coordinate description of the whole-domain boundary */ 1104c4762a1bSJed Brown static PetscErrorCode DMPlexGetExpandedBoundary_Private(DM dm, PortableBoundary *boundary) 1105c4762a1bSJed Brown { 1106c4762a1bSJed Brown PortableBoundary bnd0, bnd; 1107c4762a1bSJed Brown MPI_Comm comm; 1108c4762a1bSJed Brown DM idm; 1109c4762a1bSJed Brown DMLabel label; 1110c4762a1bSJed Brown PetscInt d; 1111c4762a1bSJed Brown const char boundaryName[] = "DMPlexDistributeInterpolateMarkInterface_boundary"; 1112c4762a1bSJed Brown IS boundary_is; 1113c4762a1bSJed Brown IS *boundary_expanded_iss; 1114c4762a1bSJed Brown PetscMPIInt rootrank = 0; 1115c4762a1bSJed Brown PetscMPIInt rank, size; 1116c4762a1bSJed Brown PetscInt value = 1; 1117c4762a1bSJed Brown DMPlexInterpolatedFlag intp; 1118c4762a1bSJed Brown PetscBool flg; 1119c4762a1bSJed Brown 1120c4762a1bSJed Brown PetscFunctionBegin; 11219566063dSJacob Faibussowitsch PetscCall(PetscNew(&bnd)); 11229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 11239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 11249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11259566063dSJacob Faibussowitsch PetscCall(DMPlexIsDistributed(dm, &flg)); 112628b400f6SJacob Faibussowitsch PetscCheck(!flg,comm, PETSC_ERR_ARG_WRONG, "serial DM (all points on one rank) needed"); 1127c4762a1bSJed Brown 1128c4762a1bSJed Brown /* interpolate serial DM if not yet interpolated */ 11299566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolatedCollective(dm, &intp)); 1130c4762a1bSJed Brown if (intp == DMPLEX_INTERPOLATED_FULL) { 1131c4762a1bSJed Brown idm = dm; 11329566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 1133c4762a1bSJed Brown } else { 11349566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(dm, &idm)); 11359566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(idm, NULL, "-idm_view")); 1136c4762a1bSJed Brown } 1137c4762a1bSJed Brown 1138c4762a1bSJed Brown /* mark whole-domain boundary of the serial DM */ 11399566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, boundaryName, &label)); 11409566063dSJacob Faibussowitsch PetscCall(DMAddLabel(idm, label)); 11419566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(idm, value, label)); 11429566063dSJacob Faibussowitsch PetscCall(DMLabelViewFromOptionsOnComm_Private(label, "-idm_boundary_view", comm)); 11439566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, &boundary_is)); 1144c4762a1bSJed Brown 1145c4762a1bSJed Brown /* translate to coordinates */ 11469566063dSJacob Faibussowitsch PetscCall(PetscNew(&bnd0)); 11479566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalSetUp(idm)); 1148c4762a1bSJed Brown if (rank == rootrank) { 11499566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeRecursive(idm, boundary_is, &bnd0->depth, &boundary_expanded_iss, &bnd0->sections)); 11509566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocalTuple(dm, boundary_expanded_iss[0], NULL, &bnd0->coordinates)); 1151c4762a1bSJed Brown /* self-check */ 1152c4762a1bSJed Brown { 1153c4762a1bSJed Brown IS is0; 11549566063dSJacob Faibussowitsch PetscCall(DMPlexExpandedVerticesCoordinatesToFaces_Private(idm, bnd0, &is0)); 11559566063dSJacob Faibussowitsch PetscCall(ISEqual(is0, boundary_is, &flg)); 115628b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF, PETSC_ERR_PLIB, "DMPlexExpandedVerticesCoordinatesToFaces_Private produced a wrong IS"); 11579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&is0)); 1158c4762a1bSJed Brown } 1159c4762a1bSJed Brown } else { 11609566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, 0, &bnd0->coordinates)); 1161c4762a1bSJed Brown } 1162c4762a1bSJed Brown 1163c4762a1bSJed Brown { 1164c4762a1bSJed Brown Vec tmp; 1165c4762a1bSJed Brown VecScatter sc; 1166c4762a1bSJed Brown IS xis; 1167c4762a1bSJed Brown PetscInt n; 1168c4762a1bSJed Brown 1169c4762a1bSJed Brown /* just convert seq vectors to mpi vector */ 11709566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(bnd0->coordinates, &n)); 11719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&n, 1, MPIU_INT, rootrank, comm)); 1172c4762a1bSJed Brown if (rank == rootrank) { 11739566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm, n, n, &tmp)); 1174c4762a1bSJed Brown } else { 11759566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm, 0, n, &tmp)); 1176c4762a1bSJed Brown } 11779566063dSJacob Faibussowitsch PetscCall(VecCopy(bnd0->coordinates, tmp)); 11789566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bnd0->coordinates)); 1179c4762a1bSJed Brown bnd0->coordinates = tmp; 1180c4762a1bSJed Brown 1181c4762a1bSJed Brown /* replicate coordinates from root rank to all ranks */ 11829566063dSJacob Faibussowitsch PetscCall(VecCreateMPI(comm, n, n*size, &bnd->coordinates)); 11839566063dSJacob Faibussowitsch PetscCall(ISCreateStride(comm, n, 0, 1, &xis)); 11849566063dSJacob Faibussowitsch PetscCall(VecScatterCreate(bnd0->coordinates, xis, bnd->coordinates, NULL, &sc)); 11859566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(sc, bnd0->coordinates, bnd->coordinates, INSERT_VALUES, SCATTER_FORWARD)); 11869566063dSJacob Faibussowitsch PetscCall(VecScatterEnd( sc, bnd0->coordinates, bnd->coordinates, INSERT_VALUES, SCATTER_FORWARD)); 11879566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&sc)); 11889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&xis)); 1189c4762a1bSJed Brown } 1190c4762a1bSJed Brown bnd->depth = bnd0->depth; 11919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Bcast(&bnd->depth, 1, MPIU_INT, rootrank, comm)); 11929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bnd->depth, &bnd->sections)); 1193c4762a1bSJed Brown for (d=0; d<bnd->depth; d++) { 11949566063dSJacob Faibussowitsch PetscCall(PetscSectionReplicate_Private(comm, rootrank, (rank == rootrank) ? bnd0->sections[d] : NULL, &bnd->sections[d])); 1195c4762a1bSJed Brown } 1196c4762a1bSJed Brown 1197c4762a1bSJed Brown if (rank == rootrank) { 11989566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreConeRecursive(idm, boundary_is, &bnd0->depth, &boundary_expanded_iss, &bnd0->sections)); 1199c4762a1bSJed Brown } 12009566063dSJacob Faibussowitsch PetscCall(PortableBoundaryDestroy(&bnd0)); 12019566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(idm, &label, PETSC_TRUE)); 12029566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 12039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&boundary_is)); 12049566063dSJacob Faibussowitsch PetscCall(DMDestroy(&idm)); 1205c4762a1bSJed Brown *boundary = bnd; 1206c4762a1bSJed Brown PetscFunctionReturn(0); 1207c4762a1bSJed Brown } 1208c4762a1bSJed Brown 1209c4762a1bSJed Brown /* get faces of inter-partition interface */ 1210c4762a1bSJed Brown static PetscErrorCode DMPlexGetInterfaceFaces_Private(DM ipdm, IS boundary_faces_is, IS *interface_faces_is) 1211c4762a1bSJed Brown { 1212c4762a1bSJed Brown MPI_Comm comm; 1213c4762a1bSJed Brown DMLabel label; 1214c4762a1bSJed Brown IS part_boundary_faces_is; 1215c4762a1bSJed Brown const char partBoundaryName[] = "DMPlexDistributeInterpolateMarkInterface_partBoundary"; 1216c4762a1bSJed Brown PetscInt value = 1; 1217c4762a1bSJed Brown DMPlexInterpolatedFlag intp; 1218c4762a1bSJed Brown 1219c4762a1bSJed Brown PetscFunctionBegin; 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)ipdm, &comm)); 12219566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolatedCollective(ipdm, &intp)); 122208401ef6SPierre Jolivet PetscCheck(intp == DMPLEX_INTERPOLATED_FULL,comm, PETSC_ERR_ARG_WRONG, "only for fully interpolated DMPlex"); 1223c4762a1bSJed Brown 1224c4762a1bSJed Brown /* get ipdm partition boundary (partBoundary) */ 12259566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, partBoundaryName, &label)); 12269566063dSJacob Faibussowitsch PetscCall(DMAddLabel(ipdm, label)); 12279566063dSJacob Faibussowitsch PetscCall(DMPlexMarkBoundaryFaces(ipdm, value, label)); 12289566063dSJacob Faibussowitsch PetscCall(DMLabelViewFromOptionsOnComm_Private(label, "-ipdm_part_boundary_view", comm)); 12299566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumISOnComm_Private(label, value, comm, &part_boundary_faces_is)); 12309566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(ipdm, &label, PETSC_TRUE)); 12319566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 1232c4762a1bSJed Brown 1233c4762a1bSJed Brown /* remove ipdm whole-domain boundary (boundary_faces_is) from ipdm partition boundary (part_boundary_faces_is), resulting just in inter-partition interface */ 12349566063dSJacob Faibussowitsch PetscCall(ISDifference(part_boundary_faces_is,boundary_faces_is,interface_faces_is)); 12359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&part_boundary_faces_is)); 1236c4762a1bSJed Brown PetscFunctionReturn(0); 1237c4762a1bSJed Brown } 1238c4762a1bSJed Brown 1239c4762a1bSJed Brown /* compute inter-partition interface including edges and vertices */ 1240c4762a1bSJed Brown static PetscErrorCode DMPlexComputeCompleteInterface_Private(DM ipdm, IS interface_faces_is, IS *interface_is) 1241c4762a1bSJed Brown { 1242c4762a1bSJed Brown DMLabel label; 1243c4762a1bSJed Brown PetscInt value = 1; 1244c4762a1bSJed Brown const char interfaceName[] = "DMPlexDistributeInterpolateMarkInterface_interface"; 1245c4762a1bSJed Brown DMPlexInterpolatedFlag intp; 1246c4762a1bSJed Brown MPI_Comm comm; 1247c4762a1bSJed Brown 1248c4762a1bSJed Brown PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)ipdm, &comm)); 12509566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolatedCollective(ipdm, &intp)); 125108401ef6SPierre Jolivet PetscCheck(intp == DMPLEX_INTERPOLATED_FULL,comm, PETSC_ERR_ARG_WRONG, "only for fully interpolated DMPlex"); 1252c4762a1bSJed Brown 12539566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, interfaceName, &label)); 12549566063dSJacob Faibussowitsch PetscCall(DMAddLabel(ipdm, label)); 12559566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, interface_faces_is)); 12569566063dSJacob Faibussowitsch PetscCall(DMLabelViewFromOptionsOnComm_Private(label, "-interface_faces_view", comm)); 12579566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(ipdm, label)); 12589566063dSJacob Faibussowitsch PetscCall(DMLabelViewFromOptionsOnComm_Private(label, "-interface_view", comm)); 12599566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumISOnComm_Private(label, value, comm, interface_is)); 12609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*interface_is, "interface_is")); 12619566063dSJacob Faibussowitsch PetscCall(ISViewFromOptions(*interface_is, NULL, "-interface_is_view")); 12629566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(ipdm, &label, PETSC_TRUE)); 12639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 1264c4762a1bSJed Brown PetscFunctionReturn(0); 1265c4762a1bSJed Brown } 1266c4762a1bSJed Brown 1267c4762a1bSJed Brown static PetscErrorCode PointSFGetOutwardInterfacePoints(PetscSF sf, IS *is) 1268c4762a1bSJed Brown { 1269c4762a1bSJed Brown PetscInt n; 1270c4762a1bSJed Brown const PetscInt *arr; 1271c4762a1bSJed Brown 1272c4762a1bSJed Brown PetscFunctionBegin; 12739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &n, &arr, NULL)); 12749566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)sf), n, arr, PETSC_USE_POINTER, is)); 1275c4762a1bSJed Brown PetscFunctionReturn(0); 1276c4762a1bSJed Brown } 1277c4762a1bSJed Brown 1278c4762a1bSJed Brown static PetscErrorCode PointSFGetInwardInterfacePoints(PetscSF sf, IS *is) 1279c4762a1bSJed Brown { 1280c4762a1bSJed Brown PetscInt n; 1281c4762a1bSJed Brown const PetscInt *rootdegree; 1282c4762a1bSJed Brown PetscInt *arr; 1283c4762a1bSJed Brown 1284c4762a1bSJed Brown PetscFunctionBegin; 12859566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 12869566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &rootdegree)); 12879566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &rootdegree)); 12889566063dSJacob Faibussowitsch PetscCall(PetscSFComputeMultiRootOriginalNumbering(sf, rootdegree, &n, &arr)); 12899566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)sf), n, arr, PETSC_OWN_POINTER, is)); 1290c4762a1bSJed Brown PetscFunctionReturn(0); 1291c4762a1bSJed Brown } 1292c4762a1bSJed Brown 1293c4762a1bSJed Brown static PetscErrorCode PointSFGetInterfacePoints_Private(PetscSF pointSF, IS *is) 1294c4762a1bSJed Brown { 1295c4762a1bSJed Brown IS pointSF_out_is, pointSF_in_is; 1296c4762a1bSJed Brown 1297c4762a1bSJed Brown PetscFunctionBegin; 12989566063dSJacob Faibussowitsch PetscCall(PointSFGetOutwardInterfacePoints(pointSF, &pointSF_out_is)); 12999566063dSJacob Faibussowitsch PetscCall(PointSFGetInwardInterfacePoints(pointSF, &pointSF_in_is)); 13009566063dSJacob Faibussowitsch PetscCall(ISExpand(pointSF_out_is, pointSF_in_is, is)); 13019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointSF_out_is)); 13029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointSF_in_is)); 1303c4762a1bSJed Brown PetscFunctionReturn(0); 1304c4762a1bSJed Brown } 1305c4762a1bSJed Brown 13065f80ce2aSJacob Faibussowitsch #define CHKERRMY(ierr) PetscCheck(!ierr,PETSC_COMM_SELF, PETSC_ERR_PLIB, "PointSF is wrong. Unable to show details!") 1307c4762a1bSJed Brown 1308c4762a1bSJed Brown static PetscErrorCode ViewPointsWithType_Internal(DM dm, IS pointsIS, PetscViewer v) 1309c4762a1bSJed Brown { 1310c4762a1bSJed Brown DMLabel label; 1311c4762a1bSJed Brown PetscSection coordsSection; 1312c4762a1bSJed Brown Vec coordsVec; 1313c4762a1bSJed Brown PetscScalar *coordsScalar; 1314c4762a1bSJed Brown PetscInt coneSize, depth, dim, i, p, npoints; 1315c4762a1bSJed Brown const PetscInt *points; 1316c4762a1bSJed Brown 1317c4762a1bSJed Brown PetscFunctionBegin; 13189566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 13199566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateSection(dm, &coordsSection)); 13209566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordsVec)); 13219566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordsVec, &coordsScalar)); 13229566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(pointsIS, &npoints)); 13239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(pointsIS, &points)); 13249566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthLabel(dm, &label)); 13259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(v)); 1326c4762a1bSJed Brown for (i=0; i<npoints; i++) { 1327c4762a1bSJed Brown p = points[i]; 13289566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &depth)); 1329c4762a1bSJed Brown if (!depth) { 1330d3e1f4ccSVaclav Hapla PetscInt n, o; 1331c4762a1bSJed Brown char coordstr[128]; 1332c4762a1bSJed Brown 13339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(coordsSection, p, &n)); 13349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(coordsSection, p, &o)); 13359566063dSJacob Faibussowitsch PetscCall(coord2str(coordstr, sizeof(coordstr), n, &coordsScalar[o], 1.0)); 133663a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(v, "vertex %" PetscInt_FMT " w/ coordinates %s\n", p, coordstr)); 1337c4762a1bSJed Brown } else { 1338c4762a1bSJed Brown char entityType[16]; 1339c4762a1bSJed Brown 1340c4762a1bSJed Brown switch (depth) { 13419566063dSJacob Faibussowitsch case 1: PetscCall(PetscStrcpy(entityType, "edge")); break; 13429566063dSJacob Faibussowitsch case 2: PetscCall(PetscStrcpy(entityType, "face")); break; 13439566063dSJacob Faibussowitsch case 3: PetscCall(PetscStrcpy(entityType, "cell")); break; 13442a27bf02SStefano Zampini default: SETERRQ(PetscObjectComm((PetscObject)v), PETSC_ERR_SUP, "Only for depth <= 3"); 1345c4762a1bSJed Brown } 1346c4762a1bSJed Brown if (depth == dim && dim < 3) { 13479566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(entityType, " (cell)", sizeof(entityType))); 1348c4762a1bSJed Brown } 134963a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(v, "%s %" PetscInt_FMT "\n", entityType, p)); 1350c4762a1bSJed Brown } 13519566063dSJacob Faibussowitsch PetscCall(DMPlexGetConeSize(dm, p, &coneSize)); 1352c4762a1bSJed Brown if (coneSize) { 1353c4762a1bSJed Brown const PetscInt *cone; 1354c4762a1bSJed Brown IS coneIS; 1355c4762a1bSJed Brown 13569566063dSJacob Faibussowitsch PetscCall(DMPlexGetCone(dm, p, &cone)); 13579566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, coneSize, cone, PETSC_USE_POINTER, &coneIS)); 13589566063dSJacob Faibussowitsch PetscCall(ViewPointsWithType_Internal(dm, coneIS, v)); 13599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&coneIS)); 1360c4762a1bSJed Brown } 1361c4762a1bSJed Brown } 13629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(v)); 13639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordsVec, &coordsScalar)); 13649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(pointsIS, &points)); 1365c4762a1bSJed Brown PetscFunctionReturn(0); 1366c4762a1bSJed Brown } 1367c4762a1bSJed Brown 1368c4762a1bSJed Brown static PetscErrorCode ViewPointsWithType(DM dm, IS points, PetscViewer v) 1369c4762a1bSJed Brown { 1370c4762a1bSJed Brown PetscBool flg; 1371c4762a1bSJed Brown PetscInt npoints; 1372c4762a1bSJed Brown PetscMPIInt rank; 1373c4762a1bSJed Brown 1374c4762a1bSJed Brown PetscFunctionBegin; 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERASCII, &flg)); 137628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)v), PETSC_ERR_SUP, "Only for ASCII viewer"); 13779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)v), &rank)); 13789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(v)); 13799566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(points, &npoints)); 1380c4762a1bSJed Brown if (npoints) { 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(v, "[%d] --------\n", rank)); 13829566063dSJacob Faibussowitsch PetscCall(ViewPointsWithType_Internal(dm, points, v)); 1383c4762a1bSJed Brown } 13849566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(v)); 13859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(v)); 1386c4762a1bSJed Brown PetscFunctionReturn(0); 1387c4762a1bSJed Brown } 1388c4762a1bSJed Brown 1389c4762a1bSJed Brown static PetscErrorCode DMPlexComparePointSFWithInterface_Private(DM ipdm, IS interface_is) 1390c4762a1bSJed Brown { 1391c4762a1bSJed Brown PetscSF pointsf; 1392c4762a1bSJed Brown IS pointsf_is; 1393c4762a1bSJed Brown PetscBool flg; 1394c4762a1bSJed Brown MPI_Comm comm; 1395c4762a1bSJed Brown PetscMPIInt size; 1396c4762a1bSJed Brown 1397c4762a1bSJed Brown PetscFunctionBegin; 13989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)ipdm, &comm)); 13999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 14009566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(ipdm, &pointsf)); 1401c4762a1bSJed Brown if (pointsf) { 1402c4762a1bSJed Brown PetscInt nroots; 14039566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(pointsf, &nroots, NULL, NULL, NULL)); 1404c4762a1bSJed Brown if (nroots < 0) pointsf = NULL; /* uninitialized SF */ 1405c4762a1bSJed Brown } 1406c4762a1bSJed Brown if (!pointsf) { 1407c4762a1bSJed Brown PetscInt N=0; 14089566063dSJacob Faibussowitsch if (interface_is) PetscCall(ISGetSize(interface_is, &N)); 140928b400f6SJacob Faibussowitsch PetscCheck(!N,comm, PETSC_ERR_PLIB, "interface_is should be NULL or empty for PointSF being NULL"); 1410c4762a1bSJed Brown PetscFunctionReturn(0); 1411c4762a1bSJed Brown } 1412c4762a1bSJed Brown 1413c4762a1bSJed Brown /* get PointSF points as IS pointsf_is */ 14149566063dSJacob Faibussowitsch PetscCall(PointSFGetInterfacePoints_Private(pointsf, &pointsf_is)); 1415c4762a1bSJed Brown 1416c4762a1bSJed Brown /* compare pointsf_is with interface_is */ 14179566063dSJacob Faibussowitsch PetscCall(ISEqual(interface_is, pointsf_is, &flg)); 14189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE,&flg,1,MPIU_BOOL,MPI_LAND,comm)); 1419c4762a1bSJed Brown if (!flg) { 1420c4762a1bSJed Brown IS pointsf_extra_is, pointsf_missing_is; 1421c4762a1bSJed Brown PetscViewer errv = PETSC_VIEWER_STDERR_(comm); 14225f80ce2aSJacob Faibussowitsch CHKERRMY(ISDifference(interface_is, pointsf_is, &pointsf_missing_is)); 14235f80ce2aSJacob Faibussowitsch CHKERRMY(ISDifference(pointsf_is, interface_is, &pointsf_extra_is)); 14245f80ce2aSJacob Faibussowitsch CHKERRMY(PetscViewerASCIIPrintf(errv, "Points missing in PointSF:\n")); 14255f80ce2aSJacob Faibussowitsch CHKERRMY(ViewPointsWithType(ipdm, pointsf_missing_is, errv)); 14265f80ce2aSJacob Faibussowitsch CHKERRMY(PetscViewerASCIIPrintf(errv, "Extra points in PointSF:\n")); 14275f80ce2aSJacob Faibussowitsch CHKERRMY(ViewPointsWithType(ipdm, pointsf_extra_is, errv)); 14285f80ce2aSJacob Faibussowitsch CHKERRMY(ISDestroy(&pointsf_extra_is)); 14295f80ce2aSJacob Faibussowitsch CHKERRMY(ISDestroy(&pointsf_missing_is)); 1430c4762a1bSJed Brown SETERRQ(comm, PETSC_ERR_PLIB, "PointSF is wrong! See details above."); 1431c4762a1bSJed Brown } 14329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointsf_is)); 1433c4762a1bSJed Brown PetscFunctionReturn(0); 1434c4762a1bSJed Brown } 1435c4762a1bSJed Brown 1436c4762a1bSJed Brown /* remove faces & edges from label, leave just vertices */ 1437c4762a1bSJed Brown static PetscErrorCode DMPlexISFilterVertices_Private(DM dm, IS points) 1438c4762a1bSJed Brown { 1439c4762a1bSJed Brown PetscInt vStart, vEnd; 1440c4762a1bSJed Brown MPI_Comm comm; 1441c4762a1bSJed Brown 1442c4762a1bSJed Brown PetscFunctionBegin; 14439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 14449566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 14459566063dSJacob Faibussowitsch PetscCall(ISGeneralFilter(points, vStart, vEnd)); 1446c4762a1bSJed Brown PetscFunctionReturn(0); 1447c4762a1bSJed Brown } 1448c4762a1bSJed Brown 1449c4762a1bSJed Brown /* 14502e58f0efSBarry Smith DMPlexCheckPointSFHeavy - Thoroughly test that the PointSF after parallel DMPlexInterpolate() includes exactly all interface points. 1451c4762a1bSJed Brown 1452c4762a1bSJed Brown Collective 1453c4762a1bSJed Brown 1454c4762a1bSJed Brown Input Parameters: 1455c4762a1bSJed Brown . dm - The DMPlex object 1456c4762a1bSJed Brown 1457c4762a1bSJed Brown Notes: 1458c4762a1bSJed Brown The input DMPlex must be serial (one partition has all points, the other partitions have no points). 1459c4762a1bSJed Brown This is a heavy test which involves DMPlexInterpolate() if the input DM is not interpolated yet, and depends on having a representation of the whole-domain boundary (PortableBoundary), which can be obtained only by DMPlexGetExpandedBoundary_Private() (which involves DMPlexInterpolate() of a sequential DM). 1460c4762a1bSJed Brown This is mainly intended for debugging/testing purposes. 1461c4762a1bSJed Brown 1462c4762a1bSJed Brown Algorithm: 1463c4762a1bSJed Brown 1. boundary faces of the serial version of the whole mesh are found using DMPlexMarkBoundaryFaces() 1464c4762a1bSJed Brown 2. boundary faces are translated into vertices using DMPlexGetConeRecursive() and these are translated into coordinates - this description (aka PortableBoundary) is completely independent of partitioning and point numbering 1465c4762a1bSJed Brown 3. the mesh is distributed or loaded in parallel 1466c4762a1bSJed Brown 4. boundary faces of the distributed mesh are reconstructed from PortableBoundary using DMPlexFindVertices() 1467c4762a1bSJed Brown 5. partition boundary faces of the parallel mesh are found using DMPlexMarkBoundaryFaces() 1468c4762a1bSJed Brown 6. partition interfaces are computed as set difference of partition boundary faces minus the reconstructed boundary 1469c4762a1bSJed Brown 7. check that interface covered by PointSF (union of inward and outward points) is equal to the partition interface for each rank, otherwise print the difference and throw an error 1470c4762a1bSJed Brown 1471c4762a1bSJed Brown Level: developer 1472c4762a1bSJed Brown 1473c4762a1bSJed Brown .seealso: DMGetPointSF(), DMPlexCheckSymmetry(), DMPlexCheckSkeleton(), DMPlexCheckFaces() 1474c4762a1bSJed Brown */ 1475c4762a1bSJed Brown static PetscErrorCode DMPlexCheckPointSFHeavy(DM dm, PortableBoundary bnd) 1476c4762a1bSJed Brown { 1477c4762a1bSJed Brown DM ipdm=NULL; 1478c4762a1bSJed Brown IS boundary_faces_is, interface_faces_is, interface_is; 1479c4762a1bSJed Brown DMPlexInterpolatedFlag intp; 1480c4762a1bSJed Brown MPI_Comm comm; 1481c4762a1bSJed Brown 1482c4762a1bSJed Brown PetscFunctionBegin; 14839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 1484c4762a1bSJed Brown 14859566063dSJacob Faibussowitsch PetscCall(DMPlexIsInterpolatedCollective(dm, &intp)); 1486c4762a1bSJed Brown if (intp == DMPLEX_INTERPOLATED_FULL) { 1487c4762a1bSJed Brown ipdm = dm; 1488c4762a1bSJed Brown } else { 1489c4762a1bSJed Brown /* create temporary interpolated DM if input DM is not interpolated */ 14909566063dSJacob Faibussowitsch PetscCall(DMPlexSetOrientInterface_Private(dm, PETSC_FALSE)); 14919566063dSJacob Faibussowitsch PetscCall(DMPlexInterpolate(dm, &ipdm)); /* with DMPlexOrientInterface_Internal() call skipped so that PointSF issues are left to DMPlexComparePointSFWithInterface_Private() below */ 14929566063dSJacob Faibussowitsch PetscCall(DMPlexSetOrientInterface_Private(dm, PETSC_TRUE)); 1493c4762a1bSJed Brown } 14949566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(ipdm, NULL, "-ipdm_view")); 1495c4762a1bSJed Brown 1496c4762a1bSJed Brown /* recover ipdm whole-domain boundary faces from the expanded vertices coordinates */ 14979566063dSJacob Faibussowitsch PetscCall(DMPlexExpandedVerticesCoordinatesToFaces_Private(ipdm, bnd, &boundary_faces_is)); 1498c4762a1bSJed Brown /* get inter-partition interface faces (interface_faces_is)*/ 14999566063dSJacob Faibussowitsch PetscCall(DMPlexGetInterfaceFaces_Private(ipdm, boundary_faces_is, &interface_faces_is)); 1500c4762a1bSJed Brown /* compute inter-partition interface including edges and vertices (interface_is) */ 15019566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCompleteInterface_Private(ipdm, interface_faces_is, &interface_is)); 1502c4762a1bSJed Brown /* destroy immediate ISs */ 15039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&boundary_faces_is)); 15049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&interface_faces_is)); 1505c4762a1bSJed Brown 1506c4762a1bSJed Brown /* for uninterpolated case, keep just vertices in interface */ 1507c4762a1bSJed Brown if (!intp) { 15089566063dSJacob Faibussowitsch PetscCall(DMPlexISFilterVertices_Private(ipdm, interface_is)); 15099566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ipdm)); 1510c4762a1bSJed Brown } 1511c4762a1bSJed Brown 1512c4762a1bSJed Brown /* compare PointSF with the boundary reconstructed from coordinates */ 15139566063dSJacob Faibussowitsch PetscCall(DMPlexComparePointSFWithInterface_Private(dm, interface_is)); 15149566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "DMPlexCheckPointSFHeavy PASSED\n")); 15159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&interface_is)); 1516c4762a1bSJed Brown PetscFunctionReturn(0); 1517c4762a1bSJed Brown } 1518c4762a1bSJed Brown 1519c4762a1bSJed Brown int main(int argc, char **argv) 1520c4762a1bSJed Brown { 1521c4762a1bSJed Brown DM dm; 1522c4762a1bSJed Brown AppCtx user; 1523c4762a1bSJed Brown 1524*327415f7SBarry Smith PetscFunctionBeginUser; 15259566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 15269566063dSJacob Faibussowitsch PetscCall(PetscLogStageRegister("create",&stage[0])); 15279566063dSJacob Faibussowitsch PetscCall(PetscLogStageRegister("distribute",&stage[1])); 15289566063dSJacob Faibussowitsch PetscCall(PetscLogStageRegister("interpolate",&stage[2])); 15299566063dSJacob Faibussowitsch PetscCall(ProcessOptions(PETSC_COMM_WORLD, &user)); 15309566063dSJacob Faibussowitsch PetscCall(CreateMesh(PETSC_COMM_WORLD, &user, &dm)); 1531c4762a1bSJed Brown if (user.nPointsToExpand) { 15329566063dSJacob Faibussowitsch PetscCall(TestExpandPoints(dm, &user)); 1533c4762a1bSJed Brown } 1534c4762a1bSJed Brown if (user.ncoords) { 1535d3e1f4ccSVaclav Hapla Vec coords; 1536d3e1f4ccSVaclav Hapla 15379566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, user.ncoords, user.ncoords, user.coords, &coords)); 15389566063dSJacob Faibussowitsch PetscCall(ViewVerticesFromCoords(dm, coords, user.coordsTol, PETSC_VIEWER_STDOUT_WORLD)); 15399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&coords)); 1540c4762a1bSJed Brown } 15419566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 15429566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 1543b122ec5aSJacob Faibussowitsch return 0; 1544c4762a1bSJed Brown } 1545c4762a1bSJed Brown 1546c4762a1bSJed Brown /*TEST 1547c4762a1bSJed Brown 1548c4762a1bSJed Brown testset: 1549c4762a1bSJed Brown nsize: 2 1550c4762a1bSJed Brown args: -dm_view ascii::ascii_info_detail 1551c4762a1bSJed Brown args: -dm_plex_check_all 1552c4762a1bSJed Brown test: 1553c4762a1bSJed Brown suffix: 1_tri_dist0 1554c4762a1bSJed Brown args: -distribute 0 -interpolate {{none create}separate output} 1555c4762a1bSJed Brown test: 1556c4762a1bSJed Brown suffix: 1_tri_dist1 1557c4762a1bSJed Brown args: -distribute 1 -interpolate {{none create after_distribute}separate output} 1558c4762a1bSJed Brown test: 1559c4762a1bSJed Brown suffix: 1_quad_dist0 1560c4762a1bSJed Brown args: -cell_simplex 0 -distribute 0 -interpolate {{none create}separate output} 1561c4762a1bSJed Brown test: 1562c4762a1bSJed Brown suffix: 1_quad_dist1 1563c4762a1bSJed Brown args: -cell_simplex 0 -distribute 1 -interpolate {{none create after_distribute}separate output} 1564c4762a1bSJed Brown test: 1565c4762a1bSJed Brown suffix: 1_1d_dist1 1566c4762a1bSJed Brown args: -dim 1 -distribute 1 1567c4762a1bSJed Brown 1568c4762a1bSJed Brown testset: 1569c4762a1bSJed Brown nsize: 3 1570c4762a1bSJed Brown args: -testnum 1 -interpolate create 1571c4762a1bSJed Brown args: -dm_plex_check_all 1572c4762a1bSJed Brown test: 1573c4762a1bSJed Brown suffix: 2 1574c4762a1bSJed Brown args: -dm_view ascii::ascii_info_detail 1575c4762a1bSJed Brown test: 1576c4762a1bSJed Brown suffix: 2a 1577c4762a1bSJed Brown args: -dm_plex_check_cones_conform_on_interfaces_verbose 1578c4762a1bSJed Brown test: 1579c4762a1bSJed Brown suffix: 2b 1580c4762a1bSJed Brown args: -test_expand_points 0,1,2,5,6 1581c4762a1bSJed Brown test: 1582c4762a1bSJed Brown suffix: 2c 1583c4762a1bSJed Brown args: -test_expand_points 0,1,2,5,6 -test_expand_points_empty 1584c4762a1bSJed Brown 1585c4762a1bSJed Brown testset: 1586c4762a1bSJed Brown # the same as 1% for 3D 1587c4762a1bSJed Brown nsize: 2 1588c4762a1bSJed Brown args: -dim 3 -dm_view ascii::ascii_info_detail 1589c4762a1bSJed Brown args: -dm_plex_check_all 1590c4762a1bSJed Brown test: 1591c4762a1bSJed Brown suffix: 4_tet_dist0 1592c4762a1bSJed Brown args: -distribute 0 -interpolate {{none create}separate output} 1593c4762a1bSJed Brown test: 1594c4762a1bSJed Brown suffix: 4_tet_dist1 1595c4762a1bSJed Brown args: -distribute 1 -interpolate {{none create after_distribute}separate output} 1596c4762a1bSJed Brown test: 1597c4762a1bSJed Brown suffix: 4_hex_dist0 1598c4762a1bSJed Brown args: -cell_simplex 0 -distribute 0 -interpolate {{none create}separate output} 1599c4762a1bSJed Brown test: 1600c4762a1bSJed Brown suffix: 4_hex_dist1 1601c4762a1bSJed Brown args: -cell_simplex 0 -distribute 1 -interpolate {{none create after_distribute}separate output} 1602c4762a1bSJed Brown 1603c4762a1bSJed Brown test: 1604c4762a1bSJed Brown # the same as 4_tet_dist0 but test different initial orientations 1605c4762a1bSJed Brown suffix: 4_tet_test_orient 1606c4762a1bSJed Brown nsize: 2 1607c4762a1bSJed Brown args: -dim 3 -distribute 0 1608c4762a1bSJed Brown args: -dm_plex_check_all 1609c4762a1bSJed Brown args: -rotate_interface_0 {{0 1 2 11 12 13}} 1610c4762a1bSJed Brown args: -rotate_interface_1 {{0 1 2 11 12 13}} 1611c4762a1bSJed Brown 1612c4762a1bSJed Brown testset: 1613c4762a1bSJed Brown requires: exodusii 1614c4762a1bSJed Brown args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/TwoQuads.exo 1615c4762a1bSJed Brown args: -dm_view ascii::ascii_info_detail 1616c4762a1bSJed Brown args: -dm_plex_check_all 1617c4762a1bSJed Brown args: -custom_view 1618c4762a1bSJed Brown test: 1619c4762a1bSJed Brown suffix: 5_seq 1620c4762a1bSJed Brown nsize: 1 1621c4762a1bSJed Brown args: -distribute 0 -interpolate {{none create}separate output} 1622c4762a1bSJed Brown test: 162330602db0SMatthew G. Knepley # Detail viewing in a non-distributed mesh is broken because the DMLabelView() is collective, but the label is not shared 1624c4762a1bSJed Brown suffix: 5_dist0 1625c4762a1bSJed Brown nsize: 2 162630602db0SMatthew G. Knepley args: -distribute 0 -interpolate {{none create}separate output} -dm_view 1627c4762a1bSJed Brown test: 1628c4762a1bSJed Brown suffix: 5_dist1 1629c4762a1bSJed Brown nsize: 2 1630c4762a1bSJed Brown args: -distribute 1 -interpolate {{none create after_distribute}separate output} 1631c4762a1bSJed Brown 1632c4762a1bSJed Brown testset: 1633c4762a1bSJed Brown nsize: {{1 2 4}} 1634c4762a1bSJed Brown args: -use_generator 1635c4762a1bSJed Brown args: -dm_plex_check_all 1636c4762a1bSJed Brown args: -distribute -interpolate none 1637c4762a1bSJed Brown test: 1638c4762a1bSJed Brown suffix: 6_tri 1639c4762a1bSJed Brown requires: triangle 1640c0517cd5SMatthew G. Knepley args: -faces {{2,2 1,3 7,4}} -cell_simplex 1 -dm_generator triangle 1641c4762a1bSJed Brown test: 1642c4762a1bSJed Brown suffix: 6_quad 1643c4762a1bSJed Brown args: -faces {{2,2 1,3 7,4}} -cell_simplex 0 1644c4762a1bSJed Brown test: 1645c4762a1bSJed Brown suffix: 6_tet 1646c4762a1bSJed Brown requires: ctetgen 1647c0517cd5SMatthew G. Knepley args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 1 -dm_generator ctetgen 1648c4762a1bSJed Brown test: 1649c4762a1bSJed Brown suffix: 6_hex 1650c4762a1bSJed Brown args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 0 1651c4762a1bSJed Brown testset: 1652c4762a1bSJed Brown nsize: {{1 2 4}} 1653c4762a1bSJed Brown args: -use_generator 1654c4762a1bSJed Brown args: -dm_plex_check_all 1655c4762a1bSJed Brown args: -distribute -interpolate create 1656c4762a1bSJed Brown test: 1657c4762a1bSJed Brown suffix: 6_int_tri 1658c4762a1bSJed Brown requires: triangle 1659c0517cd5SMatthew G. Knepley args: -faces {{2,2 1,3 7,4}} -cell_simplex 1 -dm_generator triangle 1660c4762a1bSJed Brown test: 1661c4762a1bSJed Brown suffix: 6_int_quad 1662c4762a1bSJed Brown args: -faces {{2,2 1,3 7,4}} -cell_simplex 0 1663c4762a1bSJed Brown test: 1664c4762a1bSJed Brown suffix: 6_int_tet 1665c4762a1bSJed Brown requires: ctetgen 1666c0517cd5SMatthew G. Knepley args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 1 -dm_generator ctetgen 1667c4762a1bSJed Brown test: 1668c4762a1bSJed Brown suffix: 6_int_hex 1669c4762a1bSJed Brown args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 0 1670c4762a1bSJed Brown testset: 1671c4762a1bSJed Brown nsize: {{2 4}} 1672c4762a1bSJed Brown args: -use_generator 1673c4762a1bSJed Brown args: -dm_plex_check_all 1674c4762a1bSJed Brown args: -distribute -interpolate after_distribute 1675c4762a1bSJed Brown test: 1676c4762a1bSJed Brown suffix: 6_parint_tri 1677c4762a1bSJed Brown requires: triangle 1678c0517cd5SMatthew G. Knepley args: -faces {{2,2 1,3 7,4}} -cell_simplex 1 -dm_generator triangle 1679c4762a1bSJed Brown test: 1680c4762a1bSJed Brown suffix: 6_parint_quad 1681c4762a1bSJed Brown args: -faces {{2,2 1,3 7,4}} -cell_simplex 0 1682c4762a1bSJed Brown test: 1683c4762a1bSJed Brown suffix: 6_parint_tet 1684c4762a1bSJed Brown requires: ctetgen 1685c0517cd5SMatthew G. Knepley args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 1 -dm_generator ctetgen 1686c4762a1bSJed Brown test: 1687c4762a1bSJed Brown suffix: 6_parint_hex 1688c4762a1bSJed Brown args: -faces {{2,2,2 1,3,5 3,4,7}} -cell_simplex 0 1689c4762a1bSJed Brown 1690c4762a1bSJed Brown testset: # 7 EXODUS 1691c4762a1bSJed Brown requires: exodusii 1692c4762a1bSJed Brown args: -dm_plex_check_all 1693c4762a1bSJed Brown args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/blockcylinder-50.exo 1694c4762a1bSJed Brown args: -distribute 1695c4762a1bSJed Brown test: # seq load, simple partitioner 1696c4762a1bSJed Brown suffix: 7_exo 1697c4762a1bSJed Brown nsize: {{1 2 4 5}} 1698c4762a1bSJed Brown args: -interpolate none 1699c4762a1bSJed Brown test: # seq load, seq interpolation, simple partitioner 1700c4762a1bSJed Brown suffix: 7_exo_int_simple 1701c4762a1bSJed Brown nsize: {{1 2 4 5}} 1702c4762a1bSJed Brown args: -interpolate create 1703c4762a1bSJed Brown test: # seq load, seq interpolation, metis partitioner 1704c4762a1bSJed Brown suffix: 7_exo_int_metis 1705c4762a1bSJed Brown requires: parmetis 1706c4762a1bSJed Brown nsize: {{2 4 5}} 1707c4762a1bSJed Brown args: -interpolate create 1708c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1709c4762a1bSJed Brown test: # seq load, simple partitioner, par interpolation 1710c4762a1bSJed Brown suffix: 7_exo_simple_int 1711c4762a1bSJed Brown nsize: {{2 4 5}} 1712c4762a1bSJed Brown args: -interpolate after_distribute 1713c4762a1bSJed Brown test: # seq load, metis partitioner, par interpolation 1714c4762a1bSJed Brown suffix: 7_exo_metis_int 1715c4762a1bSJed Brown requires: parmetis 1716c4762a1bSJed Brown nsize: {{2 4 5}} 1717c4762a1bSJed Brown args: -interpolate after_distribute 1718c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1719c4762a1bSJed Brown 1720c4762a1bSJed Brown testset: # 7 HDF5 SEQUANTIAL LOAD 1721c4762a1bSJed Brown requires: hdf5 !complex 1722c4762a1bSJed Brown args: -dm_plex_check_all 1723c4762a1bSJed Brown args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/blockcylinder-50.h5 -dm_plex_create_from_hdf5_xdmf 1724c4762a1bSJed Brown args: -dm_plex_hdf5_force_sequential 1725c4762a1bSJed Brown args: -distribute 1726c4762a1bSJed Brown test: # seq load, simple partitioner 1727c4762a1bSJed Brown suffix: 7_seq_hdf5_simple 1728c4762a1bSJed Brown nsize: {{1 2 4 5}} 1729c4762a1bSJed Brown args: -interpolate none 1730c4762a1bSJed Brown test: # seq load, seq interpolation, simple partitioner 1731c4762a1bSJed Brown suffix: 7_seq_hdf5_int_simple 1732c4762a1bSJed Brown nsize: {{1 2 4 5}} 1733c4762a1bSJed Brown args: -interpolate after_create 1734c4762a1bSJed Brown test: # seq load, seq interpolation, metis partitioner 1735c4762a1bSJed Brown nsize: {{2 4 5}} 1736c4762a1bSJed Brown suffix: 7_seq_hdf5_int_metis 1737c4762a1bSJed Brown requires: parmetis 1738c4762a1bSJed Brown args: -interpolate after_create 1739c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1740c4762a1bSJed Brown test: # seq load, simple partitioner, par interpolation 1741c4762a1bSJed Brown suffix: 7_seq_hdf5_simple_int 1742c4762a1bSJed Brown nsize: {{2 4 5}} 1743c4762a1bSJed Brown args: -interpolate after_distribute 1744c4762a1bSJed Brown test: # seq load, metis partitioner, par interpolation 1745c4762a1bSJed Brown nsize: {{2 4 5}} 1746c4762a1bSJed Brown suffix: 7_seq_hdf5_metis_int 1747c4762a1bSJed Brown requires: parmetis 1748c4762a1bSJed Brown args: -interpolate after_distribute 1749c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1750c4762a1bSJed Brown 1751c4762a1bSJed Brown testset: # 7 HDF5 PARALLEL LOAD 1752c4762a1bSJed Brown requires: hdf5 !complex 1753c4762a1bSJed Brown nsize: {{2 4 5}} 1754c4762a1bSJed Brown args: -dm_plex_check_all 1755c4762a1bSJed Brown args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/blockcylinder-50.h5 -dm_plex_create_from_hdf5_xdmf 1756c4762a1bSJed Brown test: # par load 1757c4762a1bSJed Brown suffix: 7_par_hdf5 1758c4762a1bSJed Brown args: -interpolate none 1759c4762a1bSJed Brown test: # par load, par interpolation 1760c4762a1bSJed Brown suffix: 7_par_hdf5_int 1761c4762a1bSJed Brown args: -interpolate after_create 1762c4762a1bSJed Brown test: # par load, parmetis repartitioner 1763c4762a1bSJed Brown TODO: Parallel partitioning of uninterpolated meshes not supported 1764c4762a1bSJed Brown suffix: 7_par_hdf5_parmetis 1765c4762a1bSJed Brown requires: parmetis 1766c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1767c4762a1bSJed Brown args: -interpolate none 1768c4762a1bSJed Brown test: # par load, par interpolation, parmetis repartitioner 1769c4762a1bSJed Brown suffix: 7_par_hdf5_int_parmetis 1770c4762a1bSJed Brown requires: parmetis 1771c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1772c4762a1bSJed Brown args: -interpolate after_create 1773c4762a1bSJed Brown test: # par load, parmetis partitioner, par interpolation 1774c4762a1bSJed Brown TODO: Parallel partitioning of uninterpolated meshes not supported 1775c4762a1bSJed Brown suffix: 7_par_hdf5_parmetis_int 1776c4762a1bSJed Brown requires: parmetis 1777c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1778c4762a1bSJed Brown args: -interpolate after_distribute 1779c4762a1bSJed Brown 1780c4762a1bSJed Brown test: 1781c4762a1bSJed Brown suffix: 7_hdf5_hierarch 1782c4762a1bSJed Brown requires: hdf5 ptscotch !complex 1783c4762a1bSJed Brown nsize: {{2 3 4}separate output} 1784c4762a1bSJed Brown args: -distribute 1785c4762a1bSJed Brown args: -interpolate after_create 1786c4762a1bSJed Brown args: -petscpartitioner_type matpartitioning -petscpartitioner_view ::ascii_info 1787c4762a1bSJed Brown args: -mat_partitioning_type hierarch -mat_partitioning_hierarchical_nfineparts 2 1788c4762a1bSJed Brown args: -mat_partitioning_hierarchical_coarseparttype ptscotch -mat_partitioning_hierarchical_fineparttype ptscotch 1789c4762a1bSJed Brown 1790c4762a1bSJed Brown test: 1791c4762a1bSJed Brown suffix: 8 1792c4762a1bSJed Brown requires: hdf5 !complex 1793c4762a1bSJed Brown nsize: 4 1794c4762a1bSJed Brown args: -filename ${wPETSC_DIR}/share/petsc/datafiles/meshes/blockcylinder-50.h5 -dm_plex_create_from_hdf5_xdmf 1795c4762a1bSJed Brown args: -distribute 0 -interpolate after_create 1796c4762a1bSJed Brown args: -view_vertices_from_coords 0.,1.,0.,-0.5,1.,0.,0.583,-0.644,0.,-2.,-2.,-2. -view_vertices_from_coords_tol 1e-3 1797c4762a1bSJed Brown args: -dm_plex_check_all 1798c4762a1bSJed Brown args: -custom_view 1799c4762a1bSJed Brown 1800c4762a1bSJed Brown testset: # 9 HDF5 SEQUANTIAL LOAD 1801c4762a1bSJed Brown requires: hdf5 !complex datafilespath 1802c4762a1bSJed Brown args: -dm_plex_check_all 1803c4762a1bSJed Brown args: -filename ${DATAFILESPATH}/meshes/cube-hexahedra-refined.h5 -dm_plex_create_from_hdf5_xdmf -dm_plex_hdf5_topology_path /cells -dm_plex_hdf5_geometry_path /coordinates 1804c4762a1bSJed Brown args: -dm_plex_hdf5_force_sequential 1805c4762a1bSJed Brown args: -distribute 1806c4762a1bSJed Brown test: # seq load, simple partitioner 1807c4762a1bSJed Brown suffix: 9_seq_hdf5_simple 1808c4762a1bSJed Brown nsize: {{1 2 4 5}} 1809c4762a1bSJed Brown args: -interpolate none 1810c4762a1bSJed Brown test: # seq load, seq interpolation, simple partitioner 1811c4762a1bSJed Brown suffix: 9_seq_hdf5_int_simple 1812c4762a1bSJed Brown nsize: {{1 2 4 5}} 1813c4762a1bSJed Brown args: -interpolate after_create 1814c4762a1bSJed Brown test: # seq load, seq interpolation, metis partitioner 1815c4762a1bSJed Brown nsize: {{2 4 5}} 1816c4762a1bSJed Brown suffix: 9_seq_hdf5_int_metis 1817c4762a1bSJed Brown requires: parmetis 1818c4762a1bSJed Brown args: -interpolate after_create 1819c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1820c4762a1bSJed Brown test: # seq load, simple partitioner, par interpolation 1821c4762a1bSJed Brown suffix: 9_seq_hdf5_simple_int 1822c4762a1bSJed Brown nsize: {{2 4 5}} 1823c4762a1bSJed Brown args: -interpolate after_distribute 1824c4762a1bSJed Brown test: # seq load, simple partitioner, par interpolation 1825c4762a1bSJed Brown # This is like 9_seq_hdf5_simple_int but testing error output of DMPlexCheckPointSFHeavy(). 1826c4762a1bSJed Brown # Once 9_seq_hdf5_simple_int gets fixed, this one gets broken. 1827c4762a1bSJed Brown # We can then provide an intentionally broken mesh instead. 1828c4762a1bSJed Brown TODO: This test is broken because PointSF is fixed. 1829c4762a1bSJed Brown suffix: 9_seq_hdf5_simple_int_err 1830c4762a1bSJed Brown nsize: 4 1831c4762a1bSJed Brown args: -interpolate after_distribute 1832c4762a1bSJed Brown filter: sed -e "/PETSC ERROR/,$$d" 1833c4762a1bSJed Brown test: # seq load, metis partitioner, par interpolation 1834c4762a1bSJed Brown nsize: {{2 4 5}} 1835c4762a1bSJed Brown suffix: 9_seq_hdf5_metis_int 1836c4762a1bSJed Brown requires: parmetis 1837c4762a1bSJed Brown args: -interpolate after_distribute 1838c4762a1bSJed Brown args: -petscpartitioner_type parmetis 1839c4762a1bSJed Brown 1840c4762a1bSJed Brown testset: # 9 HDF5 PARALLEL LOAD 1841c4762a1bSJed Brown requires: hdf5 !complex datafilespath 1842c4762a1bSJed Brown nsize: {{2 4 5}} 1843c4762a1bSJed Brown args: -dm_plex_check_all 1844c4762a1bSJed Brown args: -filename ${DATAFILESPATH}/meshes/cube-hexahedra-refined.h5 -dm_plex_create_from_hdf5_xdmf -dm_plex_hdf5_topology_path /cells -dm_plex_hdf5_geometry_path /coordinates 1845c4762a1bSJed Brown test: # par load 1846c4762a1bSJed Brown suffix: 9_par_hdf5 1847c4762a1bSJed Brown args: -interpolate none 1848c4762a1bSJed Brown test: # par load, par interpolation 1849c4762a1bSJed Brown suffix: 9_par_hdf5_int 1850c4762a1bSJed Brown args: -interpolate after_create 1851c4762a1bSJed Brown test: # par load, parmetis repartitioner 1852c4762a1bSJed Brown TODO: Parallel partitioning of uninterpolated meshes not supported 1853c4762a1bSJed Brown suffix: 9_par_hdf5_parmetis 1854c4762a1bSJed Brown requires: parmetis 1855c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1856c4762a1bSJed Brown args: -interpolate none 1857c4762a1bSJed Brown test: # par load, par interpolation, parmetis repartitioner 1858c4762a1bSJed Brown suffix: 9_par_hdf5_int_parmetis 1859c4762a1bSJed Brown requires: parmetis 1860c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1861c4762a1bSJed Brown args: -interpolate after_create 1862c4762a1bSJed Brown test: # par load, parmetis partitioner, par interpolation 1863c4762a1bSJed Brown TODO: Parallel partitioning of uninterpolated meshes not supported 1864c4762a1bSJed Brown suffix: 9_par_hdf5_parmetis_int 1865c4762a1bSJed Brown requires: parmetis 1866c4762a1bSJed Brown args: -distribute -petscpartitioner_type parmetis 1867c4762a1bSJed Brown args: -interpolate after_distribute 1868c4762a1bSJed Brown 1869c4762a1bSJed Brown testset: # 10 HDF5 PARALLEL LOAD 1870c4762a1bSJed Brown requires: hdf5 !complex datafilespath 1871c4762a1bSJed Brown nsize: {{2 4 7}} 1872c4762a1bSJed Brown args: -dm_plex_check_all 1873c4762a1bSJed Brown args: -filename ${DATAFILESPATH}/meshes/cube-hexahedra-refined2.h5 -dm_plex_create_from_hdf5_xdmf -dm_plex_hdf5_topology_path /topo -dm_plex_hdf5_geometry_path /geom 1874c4762a1bSJed Brown test: # par load, par interpolation 1875c4762a1bSJed Brown suffix: 10_par_hdf5_int 1876c4762a1bSJed Brown args: -interpolate after_create 1877c4762a1bSJed Brown TEST*/ 1878