xref: /petsc/src/dm/impls/sliced/sliced.c (revision b549a33df52e18f44cd122c2139f7c5486754f82)

#include <petscdmsliced.h>      /*I      "petscdmsliced.h"     I*/
#include <petscmat.h>           /*I      "petscmat.h"    I*/
#include <private/dmimpl.h>     /*I      "petscmat.h"    I*/

/* CSR storage of the nonzero structure of a bs*bs matrix */
typedef struct {
  PetscInt bs,nz,*i,*j;
} DMSlicedBlockFills;

typedef struct  {
  Vec                globalvector;
  PetscInt           bs,n,N,Nghosts,*ghosts;
  PetscInt           d_nz,o_nz,*d_nnz,*o_nnz;
  DMSlicedBlockFills *dfill,*ofill;
} DM_Sliced;

#undef __FUNCT__
#define __FUNCT__ "DMGetMatrix_Sliced"
PetscErrorCode  DMGetMatrix_Sliced(DM dm, const MatType mtype,Mat *J)
{
  PetscErrorCode         ierr;
  PetscInt               *globals,*sd_nnz,*so_nnz,rstart,bs,i;
  ISLocalToGlobalMapping lmap,blmap;
  void                   (*aij)(void) = PETSC_NULL;
  DM_Sliced              *slice = (DM_Sliced*)dm->data;

  PetscFunctionBegin;
  bs = slice->bs;
  ierr = MatCreate(((PetscObject)dm)->comm,J);CHKERRQ(ierr);
  ierr = MatSetSizes(*J,slice->n*bs,slice->n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
  ierr = MatSetType(*J,mtype);CHKERRQ(ierr);
  ierr = MatSeqBAIJSetPreallocation(*J,bs,slice->d_nz,slice->d_nnz);CHKERRQ(ierr);
  ierr = MatMPIBAIJSetPreallocation(*J,bs,slice->d_nz,slice->d_nnz,slice->o_nz,slice->o_nnz);CHKERRQ(ierr);
  /* In general, we have to do extra work to preallocate for scalar (AIJ) matrices so we check whether it will do any
  * good before going on with it. */
  ierr = PetscObjectQueryFunction((PetscObject)*J,"MatMPIAIJSetPreallocation_C",&aij);CHKERRQ(ierr);
  if (!aij) {
    ierr = PetscObjectQueryFunction((PetscObject)*J,"MatSeqAIJSetPreallocation_C",&aij);CHKERRQ(ierr);
  }
  if (aij) {
    if (bs == 1) {
      ierr = MatSeqAIJSetPreallocation(*J,slice->d_nz,slice->d_nnz);CHKERRQ(ierr);
      ierr = MatMPIAIJSetPreallocation(*J,slice->d_nz,slice->d_nnz,slice->o_nz,slice->o_nnz);CHKERRQ(ierr);
    } else if (!slice->d_nnz) {
      ierr = MatSeqAIJSetPreallocation(*J,slice->d_nz*bs,PETSC_NULL);CHKERRQ(ierr);
      ierr = MatMPIAIJSetPreallocation(*J,slice->d_nz*bs,PETSC_NULL,slice->o_nz*bs,PETSC_NULL);CHKERRQ(ierr);
    } else {
      /* The user has provided preallocation per block-row, convert it to per scalar-row respecting DMSlicedSetBlockFills() if applicable */
      ierr = PetscMalloc2(slice->n*bs,PetscInt,&sd_nnz,(!!slice->o_nnz)*slice->n*bs,PetscInt,&so_nnz);CHKERRQ(ierr);
      for (i=0; i<slice->n*bs; i++) {
        sd_nnz[i] = (slice->d_nnz[i/bs]-1) * (slice->ofill ? slice->ofill->i[i%bs+1]-slice->ofill->i[i%bs] : bs)
                                           + (slice->dfill ? slice->dfill->i[i%bs+1]-slice->dfill->i[i%bs] : bs);
        if (so_nnz) {
          so_nnz[i] = slice->o_nnz[i/bs] * (slice->ofill ? slice->ofill->i[i%bs+1]-slice->ofill->i[i%bs] : bs);
        }
      }
      ierr = MatSeqAIJSetPreallocation(*J,slice->d_nz*bs,sd_nnz);CHKERRQ(ierr);
      ierr = MatMPIAIJSetPreallocation(*J,slice->d_nz*bs,sd_nnz,slice->o_nz*bs,so_nnz);CHKERRQ(ierr);
      ierr = PetscFree2(sd_nnz,so_nnz);CHKERRQ(ierr);
    }
  }

  ierr = MatSetBlockSize(*J,bs);CHKERRQ(ierr);

  /* Set up the local to global map.  For the scalar map, we have to translate to entry-wise indexing instead of block-wise. */
  ierr = PetscMalloc((slice->n+slice->Nghosts)*bs*sizeof(PetscInt),&globals);CHKERRQ(ierr);
  ierr = MatGetOwnershipRange(*J,&rstart,PETSC_NULL);CHKERRQ(ierr);
  for (i=0; i<slice->n*bs; i++) {
    globals[i] = rstart + i;
  }
  for (i=0; i<slice->Nghosts*bs; i++) {
    globals[slice->n*bs+i] = slice->ghosts[i/bs]*bs + i%bs;
  }
  ierr = ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,(slice->n+slice->Nghosts)*bs,globals,PETSC_OWN_POINTER,&lmap);CHKERRQ(ierr);
  ierr = ISLocalToGlobalMappingBlock(lmap,bs,&blmap);CHKERRQ(ierr);
  ierr = MatSetLocalToGlobalMapping(*J,lmap,lmap);CHKERRQ(ierr);
  ierr = MatSetLocalToGlobalMappingBlock(*J,blmap,blmap);CHKERRQ(ierr);
  ierr = ISLocalToGlobalMappingDestroy(&lmap);CHKERRQ(ierr);
  ierr = ISLocalToGlobalMappingDestroy(&blmap);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMSlicedSetGhosts"
/*@C
    DMSlicedSetGhosts - Sets the global indices of other processes elements that will
      be ghosts on this process

    Not Collective

    Input Parameters:
+    slice - the DM object
.    bs - block size
.    nlocal - number of local (owned, non-ghost) blocks
.    Nghosts - number of ghost blocks on this process
-    ghosts - global indices of each ghost block

    Level: advanced

.seealso DMDestroy(), DMCreateGlobalVector(), DMSlicedGetGlobalIndices()

@*/
PetscErrorCode  DMSlicedSetGhosts(DM dm,PetscInt bs,PetscInt nlocal,PetscInt Nghosts,const PetscInt ghosts[])
{
  PetscErrorCode ierr;
  DM_Sliced      *slice = (DM_Sliced*)dm->data;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  ierr = PetscFree(slice->ghosts);CHKERRQ(ierr);
  ierr = PetscMalloc(Nghosts*sizeof(PetscInt),&slice->ghosts);CHKERRQ(ierr);
  ierr = PetscMemcpy(slice->ghosts,ghosts,Nghosts*sizeof(PetscInt));CHKERRQ(ierr);
  slice->bs      = bs;
  slice->n       = nlocal;
  slice->Nghosts = Nghosts;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMSlicedSetPreallocation"
/*@C
    DMSlicedSetPreallocation - sets the matrix memory preallocation for matrices computed by DMSliced

    Not Collective

    Input Parameters:
+    slice - the DM object
.    d_nz  - number of block nonzeros per block row in diagonal portion of local
           submatrix  (same for all local rows)
.    d_nnz - array containing the number of block nonzeros in the various block rows
           of the in diagonal portion of the local (possibly different for each block
           row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
.    o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
           submatrix (same for all local rows).
-    o_nnz - array containing the number of nonzeros in the various block rows of the
           off-diagonal portion of the local submatrix (possibly different for
           each block row) or PETSC_NULL.

    Notes:
    See MatMPIBAIJSetPreallocation() for more details on preallocation.  If a scalar matrix (AIJ) is
    obtained with DMSlicedGetMatrix(), the correct preallocation will be set, respecting DMSlicedSetBlockFills().

    Level: advanced

.seealso DMDestroy(), DMCreateGlobalVector(), DMSlicedGetGlobalIndices(), MatMPIAIJSetPreallocation(),
         MatMPIBAIJSetPreallocation(), DMSlicedGetMatrix(), DMSlicedSetBlockFills()

@*/
PetscErrorCode  DMSlicedSetPreallocation(DM dm,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
{
  DM_Sliced *slice = (DM_Sliced*)dm->data;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  slice->d_nz  = d_nz;
  slice->d_nnz = (PetscInt*)d_nnz;
  slice->o_nz  = o_nz;
  slice->o_nnz = (PetscInt*)o_nnz;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMSlicedSetBlockFills_Private"
static PetscErrorCode DMSlicedSetBlockFills_Private(PetscInt bs,const PetscInt *fill,DMSlicedBlockFills **inf)
{
  PetscErrorCode     ierr;
  PetscInt           i,j,nz,*fi,*fj;
  DMSlicedBlockFills *f;

  PetscFunctionBegin;
  PetscValidPointer(inf,3);
  if (*inf) {ierr = PetscFree3((*inf)->i,(*inf)->j,*inf);CHKERRQ(ierr);}
  if (!fill) PetscFunctionReturn(0);
  for (i=0,nz=0; i<bs*bs; i++) if (fill[i]) nz++;
  ierr = PetscMalloc3(1,DMSlicedBlockFills,&f,bs+1,PetscInt,&fi,nz,PetscInt,&fj);CHKERRQ(ierr);
  f->bs = bs;
  f->nz = nz;
  f->i  = fi;
  f->j  = fj;
  for (i=0,nz=0; i<bs; i++) {
    fi[i] = nz;
    for (j=0; j<bs; j++) if (fill[i*bs+j]) fj[nz++] = j;
  }
  fi[i] = nz;
  *inf = f;
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMSlicedSetBlockFills"
/*@C
    DMSlicedSetBlockFills - Sets the fill pattern in each block for a multi-component problem
    of the matrix returned by DMSlicedGetMatrix().

    Logically Collective on DM

    Input Parameter:
+   sliced - the DM object
.   dfill - the fill pattern in the diagonal block (may be PETSC_NULL, means use dense block)
-   ofill - the fill pattern in the off-diagonal blocks

    Notes:
    This only makes sense for multicomponent problems using scalar matrix formats (AIJ).
    See DMDASetBlockFills() for example usage.

    Level: advanced

.seealso DMSlicedGetMatrix(), DMDASetBlockFills()
@*/
PetscErrorCode  DMSlicedSetBlockFills(DM dm,const PetscInt *dfill,const PetscInt *ofill)
{
  DM_Sliced      *slice = (DM_Sliced*)dm->data;
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  ierr = DMSlicedSetBlockFills_Private(slice->bs,dfill,&slice->dfill);CHKERRQ(ierr);
  ierr = DMSlicedSetBlockFills_Private(slice->bs,ofill,&slice->ofill);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMDestroy_Sliced"
PetscErrorCode  DMDestroy_Sliced(DM dm)
{
  PetscErrorCode ierr;
  DM_Sliced      *slice = (DM_Sliced*)dm->data;

  PetscFunctionBegin;
  ierr = VecDestroy(&slice->globalvector);CHKERRQ(ierr);
  ierr = PetscFree(slice->ghosts);CHKERRQ(ierr);
  if (slice->dfill) {ierr = PetscFree3(slice->dfill,slice->dfill->i,slice->dfill->j);CHKERRQ(ierr);}
  if (slice->ofill) {ierr = PetscFree3(slice->ofill,slice->ofill->i,slice->ofill->j);CHKERRQ(ierr);}
  PetscFunctionReturn(0);
}

#undef __FUNCT__
#define __FUNCT__ "DMCreateGlobalVector_Sliced"
PetscErrorCode  DMCreateGlobalVector_Sliced(DM dm,Vec *gvec)
{
  PetscErrorCode     ierr;
  PetscInt           bs,cnt;
  DM_Sliced          *slice = (DM_Sliced*)dm->data;

  PetscFunctionBegin;
  PetscValidHeaderSpecific(dm,DM_CLASSID,1);
  PetscValidPointer(gvec,2);
  *gvec = 0;
  if (slice->globalvector) {
    ierr = PetscObjectGetReference((PetscObject)slice->globalvector,&cnt);CHKERRQ(ierr);
    if (cnt == 1) {             /* Nobody else has a reference so we can just reference it and give it away */
      *gvec = slice->globalvector;
      ierr = PetscObjectReference((PetscObject)*gvec);CHKERRQ(ierr);
      ierr = VecZeroEntries(*gvec);CHKERRQ(ierr);
    } else {                    /* Someone else has a reference so we duplicate the global vector */
      ierr = VecDuplicate(slice->globalvector,gvec);CHKERRQ(ierr);
    }
  } else {
    bs = slice->bs;
    ierr = VecCreateGhostBlock(((PetscObject)dm)->comm,bs,slice->n*bs,PETSC_DETERMINE,slice->Nghosts,slice->ghosts,&slice->globalvector);CHKERRQ(ierr);
    *gvec = slice->globalvector;
    ierr = PetscObjectCompose((PetscObject)*gvec,"DM",(PetscObject)dm);CHKERRQ(ierr);
    ierr = PetscObjectReference((PetscObject)*gvec);CHKERRQ(ierr);
  }
  PetscFunctionReturn(0);
}

EXTERN_C_BEGIN
#undef __FUNCT__
#define __FUNCT__ "DMCreate_Sliced"
PetscErrorCode  DMCreate_Sliced(DM p)
{
  PetscErrorCode ierr;
  DM_Sliced      *slice;

  PetscFunctionBegin;
  ierr = PetscNewLog(p,DM_Sliced,&slice);CHKERRQ(ierr);
  p->data = slice;

  ierr = PetscObjectChangeTypeName((PetscObject)p,DMSLICED);CHKERRQ(ierr);
  p->ops->createglobalvector = DMCreateGlobalVector_Sliced;
  p->ops->getmatrix          = DMGetMatrix_Sliced;
  p->ops->destroy            = DMDestroy_Sliced;
  PetscFunctionReturn(0);
}
EXTERN_C_END

#undef __FUNCT__
#define __FUNCT__ "DMSlicedCreate"
/*@C
    DMSlicedCreate - Creates a DM object, used to manage data for a unstructured problem

    Collective on MPI_Comm

    Input Parameter:
.   comm - the processors that will share the global vector

    Output Parameters:
.   slice - the slice object

    Level: advanced

.seealso DMDestroy(), DMCreateGlobalVector(), DMSlicedGetGlobalIndices()

@*/
PetscErrorCode  DMSlicedCreate(MPI_Comm comm,DM *dm)
{
  PetscErrorCode ierr;

  PetscFunctionBegin;
  PetscValidPointer(dm,2);
  ierr = DMCreate(comm,dm);CHKERRQ(ierr);
  ierr = DMSetType(*dm,DMSLICED);CHKERRQ(ierr);
  PetscFunctionReturn(0);
}


#undef __FUNCT__
#define __FUNCT__ "DMSlicedGetGlobalIndices"
/*@C
    DMSlicedGetGlobalIndices - Gets the global indices for all the local entries

    Collective on DM

    Input Parameter:
.    slice - the slice object

    Output Parameters:
.    idx - the individual indices for each packed vector/array

    Level: advanced

    Notes:
       The idx parameters should be freed by the calling routine with PetscFree()

.seealso DMSlicedDestroy(), DMCreateGlobalVector(), DMSlicedCreate()

@*/
PetscErrorCode  DMSlicedGetGlobalIndices(DM dm,PetscInt *idx[])
{
  PetscFunctionReturn(0);
}


/* Explanation of the missing functions for DMDA-style handling of the local vector:

   DMSlicedCreateLocalVector()
   DMSlicedGlobalToLocalBegin()
   DMSlicedGlobalToLocalEnd()

 There is no way to get the global form from a local form, so DMSlicedCreateLocalVector() is a memory leak without
 external accounting for the global vector.  Also, DMSliced intends the user to work with the VecGhost interface since the
 ghosts are already ordered after the owned entries.  Contrast this to a DMDA where the local vector has a special
 ordering described by the structured grid, hence it cannot share memory with the global form.  For this reason, users
 of DMSliced should work with the global vector and use

   VecGhostGetLocalForm(), VecGhostRestoreLocalForm()
   VecGhostUpdateBegin(), VecGhostUpdateEnd()

 rather than the missing DMDA-style functions.  This is conceptually simpler and offers better performance than is
 possible with the DMDA-style interface.
*/