180aecfd0Sjosephpu static char help[] = "Tests L2 projection with DMSwarm using delta function particles and deposition of linear shape.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown #include <petscdmplex.h> 4c4762a1bSJed Brown #include <petscfe.h> 5c4762a1bSJed Brown #include <petscdmswarm.h> 6c4762a1bSJed Brown #include <petscds.h> 7c4762a1bSJed Brown #include <petscksp.h> 8c4762a1bSJed Brown #include <petsc/private/petscfeimpl.h> 9c4762a1bSJed Brown typedef struct { 10832e2b15SMatthew G. Knepley PetscReal L[3]; /* Dimensions of the mesh bounding box */ 11c4762a1bSJed Brown PetscInt particlesPerCell; /* The number of partices per cell */ 12c4762a1bSJed Brown PetscReal particleRelDx; /* Relative particle position perturbation compared to average cell diameter h */ 13c4762a1bSJed Brown PetscReal meshRelDx; /* Relative vertex position perturbation compared to average cell diameter h */ 14c4762a1bSJed Brown PetscInt k; /* Mode number for test function */ 15c4762a1bSJed Brown PetscReal momentTol; /* Tolerance for checking moment conservation */ 1680aecfd0Sjosephpu PetscBool shape; 17c4762a1bSJed Brown PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 18c4762a1bSJed Brown } AppCtx; 19c4762a1bSJed Brown 20c4762a1bSJed Brown /* const char *const ex2FunctionTypes[] = {"linear","x2_x4","sin","ex2FunctionTypes","EX2_FUNCTION_",0}; */ 21c4762a1bSJed Brown 22d71ae5a4SJacob Faibussowitsch static PetscErrorCode linear(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 23d71ae5a4SJacob Faibussowitsch { 24c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 25c4762a1bSJed Brown PetscInt d; 26c4762a1bSJed Brown 27c4762a1bSJed Brown u[0] = 0.0; 28832e2b15SMatthew G. Knepley for (d = 0; d < dim; ++d) u[0] += x[d] / (ctx->L[d]); 293ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 30c4762a1bSJed Brown } 31c4762a1bSJed Brown 32d71ae5a4SJacob Faibussowitsch static PetscErrorCode x2_x4(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 33d71ae5a4SJacob Faibussowitsch { 34c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 35c4762a1bSJed Brown PetscInt d; 36c4762a1bSJed Brown 37c4762a1bSJed Brown u[0] = 1; 38832e2b15SMatthew G. Knepley for (d = 0; d < dim; ++d) u[0] *= PetscSqr(x[d]) * PetscSqr(ctx->L[d]) - PetscPowRealInt(x[d], 4); 393ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 40c4762a1bSJed Brown } 41c4762a1bSJed Brown 42d71ae5a4SJacob Faibussowitsch static PetscErrorCode sinx(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 43d71ae5a4SJacob Faibussowitsch { 44c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 45c4762a1bSJed Brown 46832e2b15SMatthew G. Knepley u[0] = PetscSinScalar(2 * PETSC_PI * ctx->k * x[0] / (ctx->L[0])); 473ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 48c4762a1bSJed Brown } 49c4762a1bSJed Brown 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 51d71ae5a4SJacob Faibussowitsch { 52c4762a1bSJed Brown char fstring[PETSC_MAX_PATH_LEN] = "linear"; 53c4762a1bSJed Brown PetscBool flag; 54c4762a1bSJed Brown 55c4762a1bSJed Brown PetscFunctionBeginUser; 56c4762a1bSJed Brown options->particlesPerCell = 1; 57c4762a1bSJed Brown options->k = 1; 58c4762a1bSJed Brown options->particleRelDx = 1.e-20; 59c4762a1bSJed Brown options->meshRelDx = 1.e-20; 60c4762a1bSJed Brown options->momentTol = 100. * PETSC_MACHINE_EPSILON; 6180aecfd0Sjosephpu options->shape = PETSC_FALSE; 62c4762a1bSJed Brown 63d0609cedSBarry Smith PetscOptionsBegin(comm, "", "L2 Projection Options", "DMPLEX"); 6480aecfd0Sjosephpu PetscCall(PetscOptionsBool("-shape", "Test linear function projection", "ex2.c", options->shape, &options->shape, NULL)); 659566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-k", "Mode number of test", "ex2.c", options->k, &options->k, NULL)); 669566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-particlesPerCell", "Number of particles per cell", "ex2.c", options->particlesPerCell, &options->particlesPerCell, NULL)); 679566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-particle_perturbation", "Relative perturbation of particles (0,1)", "ex2.c", options->particleRelDx, &options->particleRelDx, NULL)); 689566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mesh_perturbation", "Relative perturbation of mesh points (0,1)", "ex2.c", options->meshRelDx, &options->meshRelDx, NULL)); 699566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-function", "Name of test function", "ex2.c", fstring, fstring, sizeof(fstring), NULL)); 709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "linear", &flag)); 71c4762a1bSJed Brown if (flag) { 72c4762a1bSJed Brown options->func = linear; 73c4762a1bSJed Brown } else { 749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "sin", &flag)); 75c4762a1bSJed Brown if (flag) { 76c4762a1bSJed Brown options->func = sinx; 77c4762a1bSJed Brown } else { 789566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "x2_x4", &flag)); 79c4762a1bSJed Brown options->func = x2_x4; 8028b400f6SJacob Faibussowitsch PetscCheck(flag, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown function %s", fstring); 81c4762a1bSJed Brown } 82c4762a1bSJed Brown } 839566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-moment_tol", "Tolerance for moment checks", "ex2.c", options->momentTol, &options->momentTol, NULL)); 84d0609cedSBarry Smith PetscOptionsEnd(); 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86c4762a1bSJed Brown } 87c4762a1bSJed Brown 88d71ae5a4SJacob Faibussowitsch static PetscErrorCode PerturbVertices(DM dm, AppCtx *user) 89d71ae5a4SJacob Faibussowitsch { 90c4762a1bSJed Brown PetscRandom rnd; 91c4762a1bSJed Brown PetscReal interval = user->meshRelDx; 92c4762a1bSJed Brown Vec coordinates; 93c4762a1bSJed Brown PetscScalar *coords; 94832e2b15SMatthew G. Knepley PetscReal *hh, low[3], high[3]; 95832e2b15SMatthew G. Knepley PetscInt d, cdim, cEnd, N, p, bs; 96c4762a1bSJed Brown 97c4762a1bSJed Brown PetscFunctionBeginUser; 989566063dSJacob Faibussowitsch PetscCall(DMGetBoundingBox(dm, low, high)); 999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 1009566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 1019566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rnd, -interval, interval)); 1029566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rnd)); 1039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 1049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1059566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(cdim, &hh)); 106832e2b15SMatthew G. Knepley for (d = 0; d < cdim; ++d) hh[d] = (user->L[d]) / PetscPowReal(cEnd, 1. / cdim); 1079566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 1089566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(coordinates, &bs)); 10963a3b9bcSJacob Faibussowitsch PetscCheck(bs == cdim, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Coordinate vector has wrong block size %" PetscInt_FMT " != %" PetscInt_FMT, bs, cdim); 1109566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 111c4762a1bSJed Brown for (p = 0; p < N; p += cdim) { 112c4762a1bSJed Brown PetscScalar *coord = &coords[p], value; 113c4762a1bSJed Brown 114c4762a1bSJed Brown for (d = 0; d < cdim; ++d) { 1159566063dSJacob Faibussowitsch PetscCall(PetscRandomGetValue(rnd, &value)); 116832e2b15SMatthew G. Knepley coord[d] = PetscMax(low[d], PetscMin(high[d], PetscRealPart(coord[d] + value * hh[d]))); 117c4762a1bSJed Brown } 118c4762a1bSJed Brown } 1199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1209566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rnd)); 1219566063dSJacob Faibussowitsch PetscCall(PetscFree(hh)); 1223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123c4762a1bSJed Brown } 124c4762a1bSJed Brown 125d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateMesh(MPI_Comm comm, DM *dm, AppCtx *user) 126d71ae5a4SJacob Faibussowitsch { 127832e2b15SMatthew G. Knepley PetscReal low[3], high[3]; 128832e2b15SMatthew G. Knepley PetscInt cdim, d; 129c4762a1bSJed Brown 130c4762a1bSJed Brown PetscFunctionBeginUser; 1319566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, dm)); 1329566063dSJacob Faibussowitsch PetscCall(DMSetType(*dm, DMPLEX)); 1339566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(*dm)); 1349566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-dm_view")); 13530602db0SMatthew G. Knepley 1369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(*dm, &cdim)); 1379566063dSJacob Faibussowitsch PetscCall(DMGetBoundingBox(*dm, low, high)); 138832e2b15SMatthew G. Knepley for (d = 0; d < cdim; ++d) user->L[d] = high[d] - low[d]; 1399566063dSJacob Faibussowitsch PetscCall(PerturbVertices(*dm, user)); 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141c4762a1bSJed Brown } 142c4762a1bSJed Brown 143d71ae5a4SJacob Faibussowitsch static void identity(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 144d71ae5a4SJacob Faibussowitsch { 145c4762a1bSJed Brown g0[0] = 1.0; 146c4762a1bSJed Brown } 147c4762a1bSJed Brown 148d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateFEM(DM dm, AppCtx *user) 149d71ae5a4SJacob Faibussowitsch { 150c4762a1bSJed Brown PetscFE fe; 151c4762a1bSJed Brown PetscDS ds; 152832e2b15SMatthew G. Knepley DMPolytopeType ct; 153832e2b15SMatthew G. Knepley PetscInt dim, cStart; 154c4762a1bSJed Brown 155c4762a1bSJed Brown PetscFunctionBeginUser; 1569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 1589566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 159fc3eb83cSMatthew G. Knepley PetscCall(PetscFECreateByCell(PetscObjectComm((PetscObject)dm), dim, 1, ct, NULL, -1, &fe)); 1609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)fe, "fe")); 1619566063dSJacob Faibussowitsch PetscCall(DMSetField(dm, 0, NULL, (PetscObject)fe)); 1629566063dSJacob Faibussowitsch PetscCall(DMCreateDS(dm)); 1639566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 164c4762a1bSJed Brown /* Setup to form mass matrix */ 1659566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1669566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, identity, NULL, NULL, NULL)); 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168c4762a1bSJed Brown } 169c4762a1bSJed Brown 170d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateParticles(DM dm, DM *sw, AppCtx *user) 171d71ae5a4SJacob Faibussowitsch { 17219307e5cSMatthew G. Knepley DMSwarmCellDM celldm; 173c4762a1bSJed Brown PetscRandom rnd, rndp; 174c4762a1bSJed Brown PetscReal interval = user->particleRelDx; 175832e2b15SMatthew G. Knepley DMPolytopeType ct; 176832e2b15SMatthew G. Knepley PetscBool simplex; 177c4762a1bSJed Brown PetscScalar value, *vals; 178c4762a1bSJed Brown PetscReal *centroid, *coords, *xi0, *v0, *J, *invJ, detJ; 17919307e5cSMatthew G. Knepley PetscInt *swarm_cellid; 18019307e5cSMatthew G. Knepley PetscInt Ncell, Np = user->particlesPerCell, p, cStart, c, dim, d, Nfc; 18119307e5cSMatthew G. Knepley const char **coordFields, *cellid; 182c4762a1bSJed Brown 183c4762a1bSJed Brown PetscFunctionBeginUser; 1849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1859566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 1869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 187832e2b15SMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 1889566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetType(*sw, DMSWARM)); 1909566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*sw, dim)); 191c4762a1bSJed Brown 1929566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 1939566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rnd, -1.0, 1.0)); 1949566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rnd)); 1959566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rndp)); 1969566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rndp, -interval, interval)); 1979566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rndp)); 198c4762a1bSJed Brown 1999566063dSJacob Faibussowitsch PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 2009566063dSJacob Faibussowitsch PetscCall(DMSwarmSetCellDM(*sw, dm)); 2019566063dSJacob Faibussowitsch PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_SCALAR)); 2029566063dSJacob Faibussowitsch PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 2039566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &Ncell)); 2049566063dSJacob Faibussowitsch PetscCall(DMSwarmSetLocalSizes(*sw, Ncell * Np, 0)); 2059566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(*sw)); 2069072cb8bSMatthew G. Knepley 2079072cb8bSMatthew G. Knepley PetscCall(DMSwarmGetCellDMActive(*sw, &celldm)); 2089072cb8bSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 2099072cb8bSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 2109072cb8bSMatthew G. Knepley PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 2119072cb8bSMatthew G. Knepley 21219307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 21319307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 2149566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 215c4762a1bSJed Brown 2169566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(dim, ¢roid, dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 217c4762a1bSJed Brown for (c = 0; c < Ncell; ++c) { 218c4762a1bSJed Brown if (Np == 1) { 2199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, c, NULL, centroid, NULL)); 22019307e5cSMatthew G. Knepley swarm_cellid[c] = c; 221c4762a1bSJed Brown for (d = 0; d < dim; ++d) coords[c * dim + d] = centroid[d]; 222c4762a1bSJed Brown } else { 2239566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); /* affine */ 224c4762a1bSJed Brown for (d = 0; d < dim; ++d) xi0[d] = -1.0; 225c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 226c4762a1bSJed Brown const PetscInt n = c * Np + p; 227c4762a1bSJed Brown PetscReal sum = 0.0, refcoords[3]; 228c4762a1bSJed Brown 22919307e5cSMatthew G. Knepley swarm_cellid[n] = c; 2309371c9d4SSatish Balay for (d = 0; d < dim; ++d) { 2319371c9d4SSatish Balay PetscCall(PetscRandomGetValue(rnd, &value)); 2329371c9d4SSatish Balay refcoords[d] = PetscRealPart(value); 2339371c9d4SSatish Balay sum += refcoords[d]; 2349371c9d4SSatish Balay } 2359371c9d4SSatish Balay if (simplex && sum > 0.0) 2369371c9d4SSatish Balay for (d = 0; d < dim; ++d) refcoords[d] -= PetscSqrtReal(dim) * sum; 237c4762a1bSJed Brown CoordinatesRefToReal(dim, dim, xi0, v0, J, refcoords, &coords[n * dim]); 238c4762a1bSJed Brown } 239c4762a1bSJed Brown } 240c4762a1bSJed Brown } 2419566063dSJacob Faibussowitsch PetscCall(PetscFree5(centroid, xi0, v0, J, invJ)); 242c4762a1bSJed Brown for (c = 0; c < Ncell; ++c) { 243c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 244c4762a1bSJed Brown const PetscInt n = c * Np + p; 245c4762a1bSJed Brown 2469371c9d4SSatish Balay for (d = 0; d < dim; ++d) { 2479371c9d4SSatish Balay PetscCall(PetscRandomGetValue(rndp, &value)); 2489371c9d4SSatish Balay coords[n * dim + d] += PetscRealPart(value); 2499371c9d4SSatish Balay } 2503ba16761SJacob Faibussowitsch PetscCall(user->func(dim, 0.0, &coords[n * dim], 1, &vals[c], user)); 251c4762a1bSJed Brown } 252c4762a1bSJed Brown } 25319307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 25419307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 2559566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 2569566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rnd)); 2579566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rndp)); 2589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 259d52c2f21SMatthew G. Knepley PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 2609566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 2613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 262c4762a1bSJed Brown } 263c4762a1bSJed Brown 26480aecfd0Sjosephpu static PetscErrorCode CreateParticles_Shape(DM dm, DM *sw, AppCtx *user) 26580aecfd0Sjosephpu { 26619307e5cSMatthew G. Knepley DMSwarmCellDM celldm; 26780aecfd0Sjosephpu PetscDS prob; 26880aecfd0Sjosephpu PetscFE fe; 26980aecfd0Sjosephpu PetscQuadrature quad; 27080aecfd0Sjosephpu PetscScalar *vals; 27180aecfd0Sjosephpu PetscReal *v0, *J, *invJ, detJ, *coords, *xi0; 2729072cb8bSMatthew G. Knepley PetscInt *swarm_cellid; 27380aecfd0Sjosephpu const PetscReal *qpoints, *qweights; 27419307e5cSMatthew G. Knepley PetscInt cStart, cEnd, c, Nq, q, dim, Nfc; 27519307e5cSMatthew G. Knepley const char **coordFields, *cellid; 27680aecfd0Sjosephpu 27780aecfd0Sjosephpu PetscFunctionBeginUser; 27880aecfd0Sjosephpu PetscCall(DMGetDimension(dm, &dim)); 27980aecfd0Sjosephpu PetscCall(DMGetDS(dm, &prob)); 28080aecfd0Sjosephpu PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 28180aecfd0Sjosephpu PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 28280aecfd0Sjosephpu PetscCall(PetscFEGetQuadrature(fe, &quad)); 28380aecfd0Sjosephpu PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, &qpoints, &qweights)); 28480aecfd0Sjosephpu PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 28580aecfd0Sjosephpu PetscCall(DMSetType(*sw, DMSWARM)); 28680aecfd0Sjosephpu PetscCall(DMSetDimension(*sw, dim)); 28780aecfd0Sjosephpu PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 28880aecfd0Sjosephpu PetscCall(DMSwarmSetCellDM(*sw, dm)); 2899072cb8bSMatthew G. Knepley PetscCall(DMSwarmGetCellDMActive(*sw, &celldm)); 29019307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 29119307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 29219307e5cSMatthew G. Knepley PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 29380aecfd0Sjosephpu PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_REAL)); 29480aecfd0Sjosephpu PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 29580aecfd0Sjosephpu PetscCall(DMSwarmSetLocalSizes(*sw, (cEnd - cStart) * Nq, 0)); 29680aecfd0Sjosephpu PetscCall(DMSetFromOptions(*sw)); 29780aecfd0Sjosephpu PetscCall(PetscMalloc4(dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29880aecfd0Sjosephpu for (c = 0; c < dim; c++) xi0[c] = -1.; 29919307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 30019307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 30180aecfd0Sjosephpu PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 30280aecfd0Sjosephpu for (c = cStart; c < cEnd; ++c) { 30380aecfd0Sjosephpu for (q = 0; q < Nq; ++q) { 30480aecfd0Sjosephpu PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 30519307e5cSMatthew G. Knepley swarm_cellid[c * Nq + q] = c; 30680aecfd0Sjosephpu CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], &coords[(c * Nq + q) * dim]); 30780aecfd0Sjosephpu PetscCall(linear(dim, 0.0, &coords[(c * Nq + q) * dim], 1, &vals[c * Nq + q], (void *)user)); 30880aecfd0Sjosephpu vals[c * Nq + q] *= qweights[q] * detJ; 30980aecfd0Sjosephpu } 31080aecfd0Sjosephpu } 31119307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 31219307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 31380aecfd0Sjosephpu PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 31480aecfd0Sjosephpu PetscCall(PetscFree4(xi0, v0, J, invJ)); 31580aecfd0Sjosephpu PetscCall(DMSwarmMigrate(*sw, PETSC_FALSE)); 31680aecfd0Sjosephpu PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 317d52c2f21SMatthew G. Knepley PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 31880aecfd0Sjosephpu PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 31980aecfd0Sjosephpu PetscFunctionReturn(PETSC_SUCCESS); 32080aecfd0Sjosephpu } 32180aecfd0Sjosephpu 322d71ae5a4SJacob Faibussowitsch static PetscErrorCode computeParticleMoments(DM sw, PetscReal moments[3], AppCtx *user) 323d71ae5a4SJacob Faibussowitsch { 324c4762a1bSJed Brown DM dm; 325c4762a1bSJed Brown const PetscReal *coords; 326c4762a1bSJed Brown const PetscScalar *w; 327c4762a1bSJed Brown PetscReal mom[3] = {0.0, 0.0, 0.0}; 328c4762a1bSJed Brown PetscInt cell, cStart, cEnd, dim; 329c4762a1bSJed Brown 330c4762a1bSJed Brown PetscFunctionBeginUser; 3319566063dSJacob Faibussowitsch PetscCall(DMGetDimension(sw, &dim)); 3329566063dSJacob Faibussowitsch PetscCall(DMSwarmGetCellDM(sw, &dm)); 3339566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 3349566063dSJacob Faibussowitsch PetscCall(DMSwarmSortGetAccess(sw)); 3359566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 3369566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(sw, "w_q", NULL, NULL, (void **)&w)); 337c4762a1bSJed Brown for (cell = cStart; cell < cEnd; ++cell) { 338c4762a1bSJed Brown PetscInt *pidx; 339c4762a1bSJed Brown PetscInt Np, p, d; 340c4762a1bSJed Brown 3419566063dSJacob Faibussowitsch PetscCall(DMSwarmSortGetPointsPerCell(sw, cell, &Np, &pidx)); 342c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 343c4762a1bSJed Brown const PetscInt idx = pidx[p]; 344c4762a1bSJed Brown const PetscReal *c = &coords[idx * dim]; 345c4762a1bSJed Brown 346c4762a1bSJed Brown mom[0] += PetscRealPart(w[idx]); 347c4762a1bSJed Brown mom[1] += PetscRealPart(w[idx]) * c[0]; 348c4762a1bSJed Brown for (d = 0; d < dim; ++d) mom[2] += PetscRealPart(w[idx]) * c[d] * c[d]; 349c4762a1bSJed Brown } 350fe11354eSMatthew G. Knepley PetscCall(DMSwarmSortRestorePointsPerCell(sw, cell, &Np, &pidx)); 351c4762a1bSJed Brown } 3529566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 3539566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(sw, "w_q", NULL, NULL, (void **)&w)); 3549566063dSJacob Faibussowitsch PetscCall(DMSwarmSortRestoreAccess(sw)); 355462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(mom, moments, 3, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)sw))); 3563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 357c4762a1bSJed Brown } 358c4762a1bSJed Brown 359d71ae5a4SJacob Faibussowitsch static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 360d71ae5a4SJacob Faibussowitsch { 361c4762a1bSJed Brown f0[0] = u[0]; 362c4762a1bSJed Brown } 363c4762a1bSJed Brown 364d71ae5a4SJacob Faibussowitsch static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 365d71ae5a4SJacob Faibussowitsch { 366c4762a1bSJed Brown f0[0] = x[0] * u[0]; 367c4762a1bSJed Brown } 368c4762a1bSJed Brown 369d71ae5a4SJacob Faibussowitsch static void f0_r2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 370d71ae5a4SJacob Faibussowitsch { 371c4762a1bSJed Brown PetscInt d; 372c4762a1bSJed Brown 373c4762a1bSJed Brown f0[0] = 0.0; 374c4762a1bSJed Brown for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0]; 375c4762a1bSJed Brown } 376c4762a1bSJed Brown 377d71ae5a4SJacob Faibussowitsch static PetscErrorCode computeFEMMoments(DM dm, Vec u, PetscReal moments[3], AppCtx *user) 378d71ae5a4SJacob Faibussowitsch { 379c4762a1bSJed Brown PetscDS prob; 380c4762a1bSJed Brown PetscScalar mom; 381c4762a1bSJed Brown 382c4762a1bSJed Brown PetscFunctionBeginUser; 3839566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 3849566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_1)); 3859566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 386c4762a1bSJed Brown moments[0] = PetscRealPart(mom); 3879566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_x)); 3889566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 389c4762a1bSJed Brown moments[1] = PetscRealPart(mom); 3909566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_r2)); 3919566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 392c4762a1bSJed Brown moments[2] = PetscRealPart(mom); 3933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 394c4762a1bSJed Brown } 395c4762a1bSJed Brown 396fc3eb83cSMatthew G. Knepley static PetscErrorCode TestL2ProjectionParticlesToField(DM dm, DM sw, Vec fhat, AppCtx *user) 397d71ae5a4SJacob Faibussowitsch { 398fc3eb83cSMatthew G. Knepley const char *fieldnames[1] = {"w_q"}; 399fc3eb83cSMatthew G. Knepley Vec fields[1] = {fhat}; 400fc3eb83cSMatthew G. Knepley PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 401fc3eb83cSMatthew G. Knepley PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 402c4762a1bSJed Brown 403c4762a1bSJed Brown PetscFunctionBeginUser; 404953494dbSMatthew G. Knepley PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_FORWARD)); 405c4762a1bSJed Brown 406c4762a1bSJed Brown /* Check moments of field */ 4079566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 4089566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 409fc3eb83cSMatthew G. Knepley PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 410fc3eb83cSMatthew G. Knepley for (PetscInt m = 0; m < 3; ++m) { 411fc3eb83cSMatthew G. Knepley PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 412fc3eb83cSMatthew G. Knepley user->momentTol); 413c4762a1bSJed Brown } 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 415c4762a1bSJed Brown } 416c4762a1bSJed Brown 417fc3eb83cSMatthew G. Knepley static PetscErrorCode TestL2ProjectionFieldToParticles(DM dm, DM sw, Vec fhat, AppCtx *user) 418d71ae5a4SJacob Faibussowitsch { 419fc3eb83cSMatthew G. Knepley const char *fieldnames[1] = {"w_q"}; 420fc3eb83cSMatthew G. Knepley Vec fields[1] = {fhat}; 421fc3eb83cSMatthew G. Knepley PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 422fc3eb83cSMatthew G. Knepley PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 423c4762a1bSJed Brown 424c4762a1bSJed Brown PetscFunctionBeginUser; 425953494dbSMatthew G. Knepley PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_REVERSE)); 426c4762a1bSJed Brown 427c4762a1bSJed Brown /* Check moments */ 4289566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 4299566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 430fc3eb83cSMatthew G. Knepley PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 431fc3eb83cSMatthew G. Knepley for (PetscInt m = 0; m < 3; ++m) { 432fc3eb83cSMatthew G. Knepley PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 433fc3eb83cSMatthew G. Knepley user->momentTol); 434c4762a1bSJed Brown } 4353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 436c4762a1bSJed Brown } 437c4762a1bSJed Brown 438c4762a1bSJed Brown /* Interpolate the gradient of an FEM (FVM) field. Code repurposed from DMPlexComputeGradientClementInterpolant */ 439d71ae5a4SJacob Faibussowitsch static PetscErrorCode InterpolateGradient(DM dm, Vec locX, Vec locC) 440d71ae5a4SJacob Faibussowitsch { 441c4762a1bSJed Brown DM_Plex *mesh = (DM_Plex *)dm->data; 442c4762a1bSJed Brown PetscInt debug = mesh->printFEM; 443c4762a1bSJed Brown DM dmC; 444c4762a1bSJed Brown PetscSection section; 445c4762a1bSJed Brown PetscQuadrature quad = NULL; 446c4762a1bSJed Brown PetscScalar *interpolant, *gradsum; 447c4762a1bSJed Brown PetscFEGeom fegeom; 448c4762a1bSJed Brown PetscReal *coords; 449c4762a1bSJed Brown const PetscReal *quadPoints, *quadWeights; 450c4762a1bSJed Brown PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 451c4762a1bSJed Brown 452c4762a1bSJed Brown PetscFunctionBegin; 4539566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 4549566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 4559566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 4569566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 457c4762a1bSJed Brown fegeom.dimEmbed = coordDim; 4589566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 4599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 460c4762a1bSJed Brown for (field = 0; field < numFields; ++field) { 461c4762a1bSJed Brown PetscObject obj; 462c4762a1bSJed Brown PetscClassId id; 463c4762a1bSJed Brown PetscInt Nc; 464c4762a1bSJed Brown 4659566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 4669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 467c4762a1bSJed Brown if (id == PETSCFE_CLASSID) { 468c4762a1bSJed Brown PetscFE fe = (PetscFE)obj; 469c4762a1bSJed Brown 4709566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 4719566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 472c4762a1bSJed Brown } else if (id == PETSCFV_CLASSID) { 473c4762a1bSJed Brown PetscFV fv = (PetscFV)obj; 474c4762a1bSJed Brown 4759566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 4769566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 47763a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 478c4762a1bSJed Brown numComponents += Nc; 479c4762a1bSJed Brown } 4809566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 48163a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 4829566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 4839566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 4849566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 485c4762a1bSJed Brown for (v = vStart; v < vEnd; ++v) { 486c4762a1bSJed Brown PetscInt *star = NULL; 487c4762a1bSJed Brown PetscInt starSize, st, d, fc; 488c4762a1bSJed Brown 4899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 4909566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 491c4762a1bSJed Brown for (st = 0; st < starSize * 2; st += 2) { 492c4762a1bSJed Brown const PetscInt cell = star[st]; 493c4762a1bSJed Brown PetscScalar *grad = &gradsum[coordDim * numComponents]; 494c4762a1bSJed Brown PetscScalar *x = NULL; 495c4762a1bSJed Brown 496c4762a1bSJed Brown if ((cell < cStart) || (cell >= cEnd)) continue; 4979566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 4989566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 499c4762a1bSJed Brown for (field = 0, fieldOffset = 0; field < numFields; ++field) { 500c4762a1bSJed Brown PetscObject obj; 501c4762a1bSJed Brown PetscClassId id; 502c4762a1bSJed Brown PetscInt Nb, Nc, q, qc = 0; 503c4762a1bSJed Brown 5049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 5059566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 5069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5079371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 5089371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 5099371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 5109371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 5119371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 5129371c9d4SSatish Balay Nb = 1; 5139371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 514c4762a1bSJed Brown for (q = 0; q < Nq; ++q) { 51563a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 5169566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &fegeom, q, interpolant)); 51763a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 518c4762a1bSJed Brown for (fc = 0; fc < Nc; ++fc) { 519c4762a1bSJed Brown const PetscReal wt = quadWeights[q * qNc + qc + fc]; 520c4762a1bSJed Brown 521c4762a1bSJed Brown for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 522c4762a1bSJed Brown } 523c4762a1bSJed Brown } 524c4762a1bSJed Brown fieldOffset += Nb; 525c4762a1bSJed Brown } 5269566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 527c4762a1bSJed Brown for (fc = 0; fc < numComponents; ++fc) { 528ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 529c4762a1bSJed Brown } 530c4762a1bSJed Brown if (debug) { 53163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " gradient: [", cell)); 532c4762a1bSJed Brown for (fc = 0; fc < numComponents; ++fc) { 533c4762a1bSJed Brown for (d = 0; d < coordDim; ++d) { 5349566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 5359566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 536c4762a1bSJed Brown } 537c4762a1bSJed Brown } 5389566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 539c4762a1bSJed Brown } 540c4762a1bSJed Brown } 5419566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 5429566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 543c4762a1bSJed Brown } 5449566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 5453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 546c4762a1bSJed Brown } 547c4762a1bSJed Brown 548d71ae5a4SJacob Faibussowitsch static PetscErrorCode TestFieldGradientProjection(DM dm, DM sw, AppCtx *user) 549d71ae5a4SJacob Faibussowitsch { 550c4762a1bSJed Brown MPI_Comm comm; 551c4762a1bSJed Brown KSP ksp; 552c4762a1bSJed Brown Mat M; /* FEM mass matrix */ 553c4762a1bSJed Brown Mat M_p; /* Particle mass matrix */ 554c4762a1bSJed Brown Vec f, rhs, fhat, grad; /* Particle field f, \int phi_i f, FEM field */ 555c4762a1bSJed Brown PetscReal pmoments[3]; /* \int f, \int x f, \int r^2 f */ 556c4762a1bSJed Brown PetscReal fmoments[3]; /* \int \hat f, \int x \hat f, \int r^2 \hat f */ 557c4762a1bSJed Brown PetscInt m; 558c4762a1bSJed Brown 559c4762a1bSJed Brown PetscFunctionBeginUser; 5609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5619566063dSJacob Faibussowitsch PetscCall(KSPCreate(comm, &ksp)); 5629566063dSJacob Faibussowitsch PetscCall(KSPSetOptionsPrefix(ksp, "ptof_")); 5639566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &fhat)); 5649566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &rhs)); 5659566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &grad)); 566c4762a1bSJed Brown 5679566063dSJacob Faibussowitsch PetscCall(DMCreateMassMatrix(sw, dm, &M_p)); 5689566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M_p, NULL, "-M_p_view")); 569c4762a1bSJed Brown 570c4762a1bSJed Brown /* make particle weight vector */ 5719566063dSJacob Faibussowitsch PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &f)); 572c4762a1bSJed Brown 573c4762a1bSJed Brown /* create matrix RHS vector */ 5749566063dSJacob Faibussowitsch PetscCall(MatMultTranspose(M_p, f, rhs)); 5759566063dSJacob Faibussowitsch PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &f)); 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)rhs, "rhs")); 5779566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 578c4762a1bSJed Brown 5799566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &M)); 5809566063dSJacob Faibussowitsch PetscCall(DMPlexSNESComputeJacobianFEM(dm, fhat, M, M, user)); 581c4762a1bSJed Brown 5829566063dSJacob Faibussowitsch PetscCall(InterpolateGradient(dm, fhat, grad)); 583c4762a1bSJed Brown 5849566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M, NULL, "-M_view")); 5859566063dSJacob Faibussowitsch PetscCall(KSPSetOperators(ksp, M, M)); 5869566063dSJacob Faibussowitsch PetscCall(KSPSetFromOptions(ksp)); 5879566063dSJacob Faibussowitsch PetscCall(KSPSolve(ksp, rhs, grad)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)fhat, "fhat")); 5899566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(fhat, NULL, "-fhat_view")); 590c4762a1bSJed Brown 591c4762a1bSJed Brown /* Check moments of field */ 5929566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 5939566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, grad, fmoments, user)); 5949566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 595c4762a1bSJed Brown for (m = 0; m < 3; ++m) { 5961dca8a05SBarry Smith PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, comm, PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), user->momentTol); 597c4762a1bSJed Brown } 598c4762a1bSJed Brown 5999566063dSJacob Faibussowitsch PetscCall(KSPDestroy(&ksp)); 6009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M)); 6019566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M_p)); 6029566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &fhat)); 6039566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &rhs)); 6049566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &grad)); 6053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 606c4762a1bSJed Brown } 607c4762a1bSJed Brown 60880aecfd0Sjosephpu static PetscErrorCode TestL2Projection_Shape(DM dm, DM sw, AppCtx *user) 60980aecfd0Sjosephpu { 61080aecfd0Sjosephpu PetscErrorCode (*funcs[1])(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 61180aecfd0Sjosephpu KSP ksp; 61280aecfd0Sjosephpu Mat mass; 61380aecfd0Sjosephpu Vec u, rhs, uproj; 61480aecfd0Sjosephpu void *ctxs[1]; 61580aecfd0Sjosephpu PetscReal error; 61680aecfd0Sjosephpu 61780aecfd0Sjosephpu PetscFunctionBeginUser; 61880aecfd0Sjosephpu ctxs[0] = (void *)user; 61980aecfd0Sjosephpu funcs[0] = linear; 62080aecfd0Sjosephpu 62180aecfd0Sjosephpu PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &u)); 62280aecfd0Sjosephpu PetscCall(VecViewFromOptions(u, NULL, "-f_view")); 62380aecfd0Sjosephpu PetscCall(DMGetGlobalVector(dm, &rhs)); 62480aecfd0Sjosephpu PetscCall(DMCreateMassMatrix(sw, dm, &mass)); 62580aecfd0Sjosephpu PetscCall(MatMultTranspose(mass, u, rhs)); 62680aecfd0Sjosephpu PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 62780aecfd0Sjosephpu PetscCall(MatDestroy(&mass)); 62880aecfd0Sjosephpu PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &u)); 62980aecfd0Sjosephpu PetscCall(DMGetGlobalVector(dm, &uproj)); 63080aecfd0Sjosephpu PetscCall(DMCreateMatrix(dm, &mass)); 63180aecfd0Sjosephpu PetscCall(DMPlexSNESComputeJacobianFEM(dm, uproj, mass, mass, user)); 63280aecfd0Sjosephpu PetscCall(MatViewFromOptions(mass, NULL, "-mass_mat_view")); 63380aecfd0Sjosephpu PetscCall(KSPCreate(PETSC_COMM_WORLD, &ksp)); 63480aecfd0Sjosephpu PetscCall(KSPSetOperators(ksp, mass, mass)); 63580aecfd0Sjosephpu PetscCall(KSPSetFromOptions(ksp)); 63680aecfd0Sjosephpu PetscCall(KSPSolve(ksp, rhs, uproj)); 63780aecfd0Sjosephpu PetscCall(KSPDestroy(&ksp)); 63880aecfd0Sjosephpu PetscCall(PetscObjectSetName((PetscObject)uproj, "Full Projection")); 63980aecfd0Sjosephpu PetscCall(VecViewFromOptions(uproj, NULL, "-proj_vec_view")); 64080aecfd0Sjosephpu PetscCall(DMComputeL2Diff(dm, 0.0, funcs, ctxs, uproj, &error)); 64180aecfd0Sjosephpu PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Projected L2 Error: %g\n", (double)error)); 64280aecfd0Sjosephpu PetscCall(MatDestroy(&mass)); 64380aecfd0Sjosephpu PetscCall(DMRestoreGlobalVector(dm, &rhs)); 64480aecfd0Sjosephpu PetscCall(DMRestoreGlobalVector(dm, &uproj)); 64580aecfd0Sjosephpu PetscFunctionReturn(PETSC_SUCCESS); 64680aecfd0Sjosephpu } 64780aecfd0Sjosephpu 648d71ae5a4SJacob Faibussowitsch int main(int argc, char *argv[]) 649d71ae5a4SJacob Faibussowitsch { 650c4762a1bSJed Brown MPI_Comm comm; 651c4762a1bSJed Brown DM dm, sw; 652c4762a1bSJed Brown AppCtx user; 653c4762a1bSJed Brown 654327415f7SBarry Smith PetscFunctionBeginUser; 6559566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 656c4762a1bSJed Brown comm = PETSC_COMM_WORLD; 6579566063dSJacob Faibussowitsch PetscCall(ProcessOptions(comm, &user)); 6589566063dSJacob Faibussowitsch PetscCall(CreateMesh(comm, &dm, &user)); 6599566063dSJacob Faibussowitsch PetscCall(CreateFEM(dm, &user)); 66080aecfd0Sjosephpu if (!user.shape) { 661fc3eb83cSMatthew G. Knepley Vec fhat; 662fc3eb83cSMatthew G. Knepley 6639566063dSJacob Faibussowitsch PetscCall(CreateParticles(dm, &sw, &user)); 664fc3eb83cSMatthew G. Knepley PetscCall(DMGetGlobalVector(dm, &fhat)); 665fc3eb83cSMatthew G. Knepley PetscCall(TestL2ProjectionParticlesToField(dm, sw, fhat, &user)); 666fc3eb83cSMatthew G. Knepley PetscCall(TestL2ProjectionFieldToParticles(dm, sw, fhat, &user)); 6679566063dSJacob Faibussowitsch PetscCall(TestFieldGradientProjection(dm, sw, &user)); 668fc3eb83cSMatthew G. Knepley PetscCall(DMRestoreGlobalVector(dm, &fhat)); 66980aecfd0Sjosephpu } else { 67080aecfd0Sjosephpu PetscCall(CreateParticles_Shape(dm, &sw, &user)); 67180aecfd0Sjosephpu PetscCall(TestL2Projection_Shape(dm, sw, &user)); 67280aecfd0Sjosephpu } 6739566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 6749566063dSJacob Faibussowitsch PetscCall(DMDestroy(&sw)); 6759566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 676b122ec5aSJacob Faibussowitsch return 0; 677c4762a1bSJed Brown } 678c4762a1bSJed Brown 679c4762a1bSJed Brown /*TEST 680c4762a1bSJed Brown 681832e2b15SMatthew G. Knepley # Swarm does not handle complex or quad 682832e2b15SMatthew G. Knepley build: 683832e2b15SMatthew G. Knepley requires: !complex double 684832e2b15SMatthew G. Knepley 685c4762a1bSJed Brown test: 686c4762a1bSJed Brown suffix: proj_tri_0 687832e2b15SMatthew G. Knepley requires: triangle 688832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 689c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 690c4762a1bSJed Brown 691c4762a1bSJed Brown test: 692c4762a1bSJed Brown suffix: proj_tri_2_faces 693832e2b15SMatthew G. Knepley requires: triangle 694832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 695c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 696c4762a1bSJed Brown 697c4762a1bSJed Brown test: 698c4762a1bSJed Brown suffix: proj_quad_0 699832e2b15SMatthew G. Knepley requires: triangle 70030602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 701c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 702c4762a1bSJed Brown 703c4762a1bSJed Brown test: 704c4762a1bSJed Brown suffix: proj_quad_2_faces 705832e2b15SMatthew G. Knepley requires: triangle 70630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 707c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 708*953fc092SRylanor test: 709*953fc092SRylanor suffix: proj_quad_hip_serial 710*953fc092SRylanor requires: triangle hip 711*953fc092SRylanor nsize: 1 712*953fc092SRylanor args: -dm_plex_simplex 0 -dm_plex_box_faces 8,8 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -dm_vec_type hip -mat_type aijhipsparse -ptof_ksp_type cg -ptof_pc_type ilu -ptof_ksp_rtol 1e-15 -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 713*953fc092SRylanor filter: grep -v marker | grep -v atomic | grep -v usage 714*953fc092SRylanor test: 715*953fc092SRylanor suffix: proj_quad_hip_parallel 716*953fc092SRylanor requires: triangle hip 717*953fc092SRylanor nsize: 2 718*953fc092SRylanor args: -dm_plex_simplex 0 -dm_plex_box_faces 8,8 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -dm_vec_type hip -mat_type aijhipsparse -ptof_ksp_type cg -ptof_pc_type asm -ptof_sub_pc_type ilu -ptof_ksp_rtol 1e-15 -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 719*953fc092SRylanor filter: grep -v marker | grep -v atomic | grep -v usage 720c4762a1bSJed Brown test: 721c4762a1bSJed Brown suffix: proj_tri_5P 722832e2b15SMatthew G. Knepley requires: triangle 723832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 724c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 725c4762a1bSJed Brown 726c4762a1bSJed Brown test: 727c4762a1bSJed Brown suffix: proj_quad_5P 728832e2b15SMatthew G. Knepley requires: triangle 72930602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 730c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 731c4762a1bSJed Brown 732c4762a1bSJed Brown test: 733c4762a1bSJed Brown suffix: proj_tri_mdx 734832e2b15SMatthew G. Knepley requires: triangle 735832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 736c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 737c4762a1bSJed Brown 738c4762a1bSJed Brown test: 739c4762a1bSJed Brown suffix: proj_tri_mdx_5P 740832e2b15SMatthew G. Knepley requires: triangle 741832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 742c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 743c4762a1bSJed Brown 744c4762a1bSJed Brown test: 745c4762a1bSJed Brown suffix: proj_tri_3d 746832e2b15SMatthew G. Knepley requires: ctetgen 74730602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 748c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 749c4762a1bSJed Brown 750c4762a1bSJed Brown test: 751c4762a1bSJed Brown suffix: proj_tri_3d_2_faces 752832e2b15SMatthew G. Knepley requires: ctetgen 75330602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 754c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 755c4762a1bSJed Brown 756c4762a1bSJed Brown test: 757c4762a1bSJed Brown suffix: proj_tri_3d_5P 758832e2b15SMatthew G. Knepley requires: ctetgen 75930602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 760c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 761c4762a1bSJed Brown 762c4762a1bSJed Brown test: 763c4762a1bSJed Brown suffix: proj_tri_3d_mdx 764832e2b15SMatthew G. Knepley requires: ctetgen 76530602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 766c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 767c4762a1bSJed Brown 768c4762a1bSJed Brown test: 769c4762a1bSJed Brown suffix: proj_tri_3d_mdx_5P 770832e2b15SMatthew G. Knepley requires: ctetgen 77130602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 772c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 773c4762a1bSJed Brown 774c4762a1bSJed Brown test: 775c4762a1bSJed Brown suffix: proj_tri_3d_mdx_2_faces 776832e2b15SMatthew G. Knepley requires: ctetgen 77730602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 778c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 779c4762a1bSJed Brown 780c4762a1bSJed Brown test: 781c4762a1bSJed Brown suffix: proj_tri_3d_mdx_5P_2_faces 782832e2b15SMatthew G. Knepley requires: ctetgen 78330602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 784c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 785c4762a1bSJed Brown 786832e2b15SMatthew G. Knepley test: 787832e2b15SMatthew G. Knepley suffix: proj_quad_lsqr_scale 788832e2b15SMatthew G. Knepley requires: !complex 78930602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 790832e2b15SMatthew G. Knepley -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 791832e2b15SMatthew G. Knepley -particlesPerCell 200 \ 792832e2b15SMatthew G. Knepley -ptof_pc_type lu \ 793832e2b15SMatthew G. Knepley -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type none 794832e2b15SMatthew G. Knepley 795832e2b15SMatthew G. Knepley test: 796832e2b15SMatthew G. Knepley suffix: proj_quad_lsqr_prec_scale 797832e2b15SMatthew G. Knepley requires: !complex 79830602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 799832e2b15SMatthew G. Knepley -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 800832e2b15SMatthew G. Knepley -particlesPerCell 200 \ 801832e2b15SMatthew G. Knepley -ptof_pc_type lu \ 802fc3eb83cSMatthew G. Knepley -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type bjacobi -ftop_sub_pc_type lu -ftop_sub_pc_factor_shift_type nonzero 80380aecfd0Sjosephpu test: 80480aecfd0Sjosephpu suffix: proj_shape_linear_tri_2d 80580aecfd0Sjosephpu requires: ctetgen triangle 80680aecfd0Sjosephpu args: -shape -dm_plex_box_faces 2,2\ 80780aecfd0Sjosephpu -dm_view -sw_view\ 80880aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 80980aecfd0Sjosephpu -pc_type lu 81080aecfd0Sjosephpu test: 81180aecfd0Sjosephpu suffix: proj_shape_linear_quad_2d 81280aecfd0Sjosephpu requires: ctetgen triangle 81380aecfd0Sjosephpu args: -shape -dm_plex_simplex 0 -dm_plex_box_faces 2,2\ 81480aecfd0Sjosephpu -dm_view -sw_view\ 81580aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 81680aecfd0Sjosephpu -pc_type lu 81780aecfd0Sjosephpu test: 81880aecfd0Sjosephpu suffix: proj_shape_linear_tri_3d 81980aecfd0Sjosephpu requires: ctetgen triangle 82080aecfd0Sjosephpu args: -shape -dm_plex_dim 3 -dm_plex_box_faces 2,2,2\ 82180aecfd0Sjosephpu -dm_view -sw_view\ 82280aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 82380aecfd0Sjosephpu -pc_type lu 82480aecfd0Sjosephpu test: 82580aecfd0Sjosephpu suffix: proj_shape_linear_quad_3d 82680aecfd0Sjosephpu requires: ctetgen triangle 82780aecfd0Sjosephpu args: -shape -dm_plex_dim 3 -dm_plex_simplex 0\ 82880aecfd0Sjosephpu -dm_plex_box_faces 2,2,2\ 82980aecfd0Sjosephpu -dm_view -sw_view\ 83080aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 83180aecfd0Sjosephpu -pc_type lu 832c4762a1bSJed Brown TEST*/ 833