180aecfd0Sjosephpu static char help[] = "Tests L2 projection with DMSwarm using delta function particles and deposition of linear shape.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown #include <petscdmplex.h> 4c4762a1bSJed Brown #include <petscfe.h> 5c4762a1bSJed Brown #include <petscdmswarm.h> 6c4762a1bSJed Brown #include <petscds.h> 7c4762a1bSJed Brown #include <petscksp.h> 8c4762a1bSJed Brown #include <petsc/private/petscfeimpl.h> 9c4762a1bSJed Brown typedef struct { 10832e2b15SMatthew G. Knepley PetscReal L[3]; /* Dimensions of the mesh bounding box */ 11c4762a1bSJed Brown PetscInt particlesPerCell; /* The number of partices per cell */ 12c4762a1bSJed Brown PetscReal particleRelDx; /* Relative particle position perturbation compared to average cell diameter h */ 13c4762a1bSJed Brown PetscReal meshRelDx; /* Relative vertex position perturbation compared to average cell diameter h */ 14c4762a1bSJed Brown PetscInt k; /* Mode number for test function */ 15c4762a1bSJed Brown PetscReal momentTol; /* Tolerance for checking moment conservation */ 1680aecfd0Sjosephpu PetscBool shape; 17c4762a1bSJed Brown PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 18c4762a1bSJed Brown } AppCtx; 19c4762a1bSJed Brown 20c4762a1bSJed Brown /* const char *const ex2FunctionTypes[] = {"linear","x2_x4","sin","ex2FunctionTypes","EX2_FUNCTION_",0}; */ 21c4762a1bSJed Brown 22d71ae5a4SJacob Faibussowitsch static PetscErrorCode linear(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 23d71ae5a4SJacob Faibussowitsch { 24c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 25c4762a1bSJed Brown PetscInt d; 26c4762a1bSJed Brown 27c4762a1bSJed Brown u[0] = 0.0; 28832e2b15SMatthew G. Knepley for (d = 0; d < dim; ++d) u[0] += x[d] / (ctx->L[d]); 293ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 30c4762a1bSJed Brown } 31c4762a1bSJed Brown 32d71ae5a4SJacob Faibussowitsch static PetscErrorCode x2_x4(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 33d71ae5a4SJacob Faibussowitsch { 34c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 35c4762a1bSJed Brown PetscInt d; 36c4762a1bSJed Brown 37c4762a1bSJed Brown u[0] = 1; 38832e2b15SMatthew G. Knepley for (d = 0; d < dim; ++d) u[0] *= PetscSqr(x[d]) * PetscSqr(ctx->L[d]) - PetscPowRealInt(x[d], 4); 393ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 40c4762a1bSJed Brown } 41c4762a1bSJed Brown 42d71ae5a4SJacob Faibussowitsch static PetscErrorCode sinx(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 43d71ae5a4SJacob Faibussowitsch { 44c4762a1bSJed Brown AppCtx *ctx = (AppCtx *)a_ctx; 45c4762a1bSJed Brown 46832e2b15SMatthew G. Knepley u[0] = PetscSinScalar(2 * PETSC_PI * ctx->k * x[0] / (ctx->L[0])); 473ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 48c4762a1bSJed Brown } 49c4762a1bSJed Brown 50d71ae5a4SJacob Faibussowitsch static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 51d71ae5a4SJacob Faibussowitsch { 52c4762a1bSJed Brown char fstring[PETSC_MAX_PATH_LEN] = "linear"; 53c4762a1bSJed Brown PetscBool flag; 54c4762a1bSJed Brown 55c4762a1bSJed Brown PetscFunctionBeginUser; 56c4762a1bSJed Brown options->particlesPerCell = 1; 57c4762a1bSJed Brown options->k = 1; 58c4762a1bSJed Brown options->particleRelDx = 1.e-20; 59c4762a1bSJed Brown options->meshRelDx = 1.e-20; 60c4762a1bSJed Brown options->momentTol = 100. * PETSC_MACHINE_EPSILON; 6180aecfd0Sjosephpu options->shape = PETSC_FALSE; 62c4762a1bSJed Brown 63d0609cedSBarry Smith PetscOptionsBegin(comm, "", "L2 Projection Options", "DMPLEX"); 6480aecfd0Sjosephpu PetscCall(PetscOptionsBool("-shape", "Test linear function projection", "ex2.c", options->shape, &options->shape, NULL)); 659566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-k", "Mode number of test", "ex2.c", options->k, &options->k, NULL)); 669566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-particlesPerCell", "Number of particles per cell", "ex2.c", options->particlesPerCell, &options->particlesPerCell, NULL)); 679566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-particle_perturbation", "Relative perturbation of particles (0,1)", "ex2.c", options->particleRelDx, &options->particleRelDx, NULL)); 689566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mesh_perturbation", "Relative perturbation of mesh points (0,1)", "ex2.c", options->meshRelDx, &options->meshRelDx, NULL)); 699566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-function", "Name of test function", "ex2.c", fstring, fstring, sizeof(fstring), NULL)); 709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "linear", &flag)); 71c4762a1bSJed Brown if (flag) { 72c4762a1bSJed Brown options->func = linear; 73c4762a1bSJed Brown } else { 749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "sin", &flag)); 75c4762a1bSJed Brown if (flag) { 76c4762a1bSJed Brown options->func = sinx; 77c4762a1bSJed Brown } else { 789566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(fstring, "x2_x4", &flag)); 79c4762a1bSJed Brown options->func = x2_x4; 8028b400f6SJacob Faibussowitsch PetscCheck(flag, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown function %s", fstring); 81c4762a1bSJed Brown } 82c4762a1bSJed Brown } 839566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-moment_tol", "Tolerance for moment checks", "ex2.c", options->momentTol, &options->momentTol, NULL)); 84d0609cedSBarry Smith PetscOptionsEnd(); 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86c4762a1bSJed Brown } 87c4762a1bSJed Brown 88d71ae5a4SJacob Faibussowitsch static PetscErrorCode PerturbVertices(DM dm, AppCtx *user) 89d71ae5a4SJacob Faibussowitsch { 90c4762a1bSJed Brown PetscRandom rnd; 91c4762a1bSJed Brown PetscReal interval = user->meshRelDx; 92c4762a1bSJed Brown Vec coordinates; 93c4762a1bSJed Brown PetscScalar *coords; 94832e2b15SMatthew G. Knepley PetscReal *hh, low[3], high[3]; 95832e2b15SMatthew G. Knepley PetscInt d, cdim, cEnd, N, p, bs; 96c4762a1bSJed Brown 97c4762a1bSJed Brown PetscFunctionBeginUser; 989566063dSJacob Faibussowitsch PetscCall(DMGetBoundingBox(dm, low, high)); 999566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 1009566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 1019566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rnd, -interval, interval)); 1029566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rnd)); 1039566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 1049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1059566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(cdim, &hh)); 106832e2b15SMatthew G. Knepley for (d = 0; d < cdim; ++d) hh[d] = (user->L[d]) / PetscPowReal(cEnd, 1. / cdim); 1079566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(coordinates, &N)); 1089566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(coordinates, &bs)); 10963a3b9bcSJacob Faibussowitsch PetscCheck(bs == cdim, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Coordinate vector has wrong block size %" PetscInt_FMT " != %" PetscInt_FMT, bs, cdim); 1109566063dSJacob Faibussowitsch PetscCall(VecGetArray(coordinates, &coords)); 111c4762a1bSJed Brown for (p = 0; p < N; p += cdim) { 112c4762a1bSJed Brown PetscScalar *coord = &coords[p], value; 113c4762a1bSJed Brown 114c4762a1bSJed Brown for (d = 0; d < cdim; ++d) { 1159566063dSJacob Faibussowitsch PetscCall(PetscRandomGetValue(rnd, &value)); 116832e2b15SMatthew G. Knepley coord[d] = PetscMax(low[d], PetscMin(high[d], PetscRealPart(coord[d] + value * hh[d]))); 117c4762a1bSJed Brown } 118c4762a1bSJed Brown } 1199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(coordinates, &coords)); 1209566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rnd)); 1219566063dSJacob Faibussowitsch PetscCall(PetscFree(hh)); 1223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123c4762a1bSJed Brown } 124c4762a1bSJed Brown 125d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateMesh(MPI_Comm comm, DM *dm, AppCtx *user) 126d71ae5a4SJacob Faibussowitsch { 127832e2b15SMatthew G. Knepley PetscReal low[3], high[3]; 128832e2b15SMatthew G. Knepley PetscInt cdim, d; 129c4762a1bSJed Brown 130c4762a1bSJed Brown PetscFunctionBeginUser; 1319566063dSJacob Faibussowitsch PetscCall(DMCreate(comm, dm)); 1329566063dSJacob Faibussowitsch PetscCall(DMSetType(*dm, DMPLEX)); 1339566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(*dm)); 1349566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*dm, NULL, "-dm_view")); 13530602db0SMatthew G. Knepley 1369566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(*dm, &cdim)); 1379566063dSJacob Faibussowitsch PetscCall(DMGetBoundingBox(*dm, low, high)); 138832e2b15SMatthew G. Knepley for (d = 0; d < cdim; ++d) user->L[d] = high[d] - low[d]; 1399566063dSJacob Faibussowitsch PetscCall(PerturbVertices(*dm, user)); 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141c4762a1bSJed Brown } 142c4762a1bSJed Brown 143d71ae5a4SJacob Faibussowitsch static void identity(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 144d71ae5a4SJacob Faibussowitsch { 145c4762a1bSJed Brown g0[0] = 1.0; 146c4762a1bSJed Brown } 147c4762a1bSJed Brown 148d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateFEM(DM dm, AppCtx *user) 149d71ae5a4SJacob Faibussowitsch { 150c4762a1bSJed Brown PetscFE fe; 151c4762a1bSJed Brown PetscDS ds; 152832e2b15SMatthew G. Knepley DMPolytopeType ct; 153832e2b15SMatthew G. Knepley PetscInt dim, cStart; 154c4762a1bSJed Brown 155c4762a1bSJed Brown PetscFunctionBeginUser; 1569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 1589566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 159fc3eb83cSMatthew G. Knepley PetscCall(PetscFECreateByCell(PetscObjectComm((PetscObject)dm), dim, 1, ct, NULL, -1, &fe)); 1609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)fe, "fe")); 1619566063dSJacob Faibussowitsch PetscCall(DMSetField(dm, 0, NULL, (PetscObject)fe)); 1629566063dSJacob Faibussowitsch PetscCall(DMCreateDS(dm)); 1639566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&fe)); 164c4762a1bSJed Brown /* Setup to form mass matrix */ 1659566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 1669566063dSJacob Faibussowitsch PetscCall(PetscDSSetJacobian(ds, 0, 0, identity, NULL, NULL, NULL)); 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168c4762a1bSJed Brown } 169c4762a1bSJed Brown 170d71ae5a4SJacob Faibussowitsch static PetscErrorCode CreateParticles(DM dm, DM *sw, AppCtx *user) 171d71ae5a4SJacob Faibussowitsch { 172*19307e5cSMatthew G. Knepley DMSwarmCellDM celldm; 173c4762a1bSJed Brown PetscRandom rnd, rndp; 174c4762a1bSJed Brown PetscReal interval = user->particleRelDx; 175832e2b15SMatthew G. Knepley DMPolytopeType ct; 176832e2b15SMatthew G. Knepley PetscBool simplex; 177c4762a1bSJed Brown PetscScalar value, *vals; 178c4762a1bSJed Brown PetscReal *centroid, *coords, *xi0, *v0, *J, *invJ, detJ; 179*19307e5cSMatthew G. Knepley PetscInt *swarm_cellid; 180*19307e5cSMatthew G. Knepley PetscInt Ncell, Np = user->particlesPerCell, p, cStart, c, dim, d, Nfc; 181*19307e5cSMatthew G. Knepley const char **coordFields, *cellid; 182c4762a1bSJed Brown 183c4762a1bSJed Brown PetscFunctionBeginUser; 1849566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1859566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 1869566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 187832e2b15SMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 1889566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetType(*sw, DMSWARM)); 1909566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*sw, dim)); 191*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetCellDMActive(sw, &celldm)); 192*19307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 193*19307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 194*19307e5cSMatthew G. Knepley PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 195c4762a1bSJed Brown 1969566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 1979566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rnd, -1.0, 1.0)); 1989566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rnd)); 1999566063dSJacob Faibussowitsch PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rndp)); 2009566063dSJacob Faibussowitsch PetscCall(PetscRandomSetInterval(rndp, -interval, interval)); 2019566063dSJacob Faibussowitsch PetscCall(PetscRandomSetFromOptions(rndp)); 202c4762a1bSJed Brown 2039566063dSJacob Faibussowitsch PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 2049566063dSJacob Faibussowitsch PetscCall(DMSwarmSetCellDM(*sw, dm)); 2059566063dSJacob Faibussowitsch PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_SCALAR)); 2069566063dSJacob Faibussowitsch PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 2079566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &Ncell)); 2089566063dSJacob Faibussowitsch PetscCall(DMSwarmSetLocalSizes(*sw, Ncell * Np, 0)); 2099566063dSJacob Faibussowitsch PetscCall(DMSetFromOptions(*sw)); 210*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 211*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 2129566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 213c4762a1bSJed Brown 2149566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(dim, ¢roid, dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 215c4762a1bSJed Brown for (c = 0; c < Ncell; ++c) { 216c4762a1bSJed Brown if (Np == 1) { 2179566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFVM(dm, c, NULL, centroid, NULL)); 218*19307e5cSMatthew G. Knepley swarm_cellid[c] = c; 219c4762a1bSJed Brown for (d = 0; d < dim; ++d) coords[c * dim + d] = centroid[d]; 220c4762a1bSJed Brown } else { 2219566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); /* affine */ 222c4762a1bSJed Brown for (d = 0; d < dim; ++d) xi0[d] = -1.0; 223c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 224c4762a1bSJed Brown const PetscInt n = c * Np + p; 225c4762a1bSJed Brown PetscReal sum = 0.0, refcoords[3]; 226c4762a1bSJed Brown 227*19307e5cSMatthew G. Knepley swarm_cellid[n] = c; 2289371c9d4SSatish Balay for (d = 0; d < dim; ++d) { 2299371c9d4SSatish Balay PetscCall(PetscRandomGetValue(rnd, &value)); 2309371c9d4SSatish Balay refcoords[d] = PetscRealPart(value); 2319371c9d4SSatish Balay sum += refcoords[d]; 2329371c9d4SSatish Balay } 2339371c9d4SSatish Balay if (simplex && sum > 0.0) 2349371c9d4SSatish Balay for (d = 0; d < dim; ++d) refcoords[d] -= PetscSqrtReal(dim) * sum; 235c4762a1bSJed Brown CoordinatesRefToReal(dim, dim, xi0, v0, J, refcoords, &coords[n * dim]); 236c4762a1bSJed Brown } 237c4762a1bSJed Brown } 238c4762a1bSJed Brown } 2399566063dSJacob Faibussowitsch PetscCall(PetscFree5(centroid, xi0, v0, J, invJ)); 240c4762a1bSJed Brown for (c = 0; c < Ncell; ++c) { 241c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 242c4762a1bSJed Brown const PetscInt n = c * Np + p; 243c4762a1bSJed Brown 2449371c9d4SSatish Balay for (d = 0; d < dim; ++d) { 2459371c9d4SSatish Balay PetscCall(PetscRandomGetValue(rndp, &value)); 2469371c9d4SSatish Balay coords[n * dim + d] += PetscRealPart(value); 2479371c9d4SSatish Balay } 2483ba16761SJacob Faibussowitsch PetscCall(user->func(dim, 0.0, &coords[n * dim], 1, &vals[c], user)); 249c4762a1bSJed Brown } 250c4762a1bSJed Brown } 251*19307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 252*19307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 2539566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 2549566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rnd)); 2559566063dSJacob Faibussowitsch PetscCall(PetscRandomDestroy(&rndp)); 2569566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 257d52c2f21SMatthew G. Knepley PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 2589566063dSJacob Faibussowitsch PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260c4762a1bSJed Brown } 261c4762a1bSJed Brown 26280aecfd0Sjosephpu static PetscErrorCode CreateParticles_Shape(DM dm, DM *sw, AppCtx *user) 26380aecfd0Sjosephpu { 264*19307e5cSMatthew G. Knepley DMSwarmCellDM celldm; 26580aecfd0Sjosephpu PetscDS prob; 26680aecfd0Sjosephpu PetscFE fe; 26780aecfd0Sjosephpu PetscQuadrature quad; 26880aecfd0Sjosephpu PetscScalar *vals; 26980aecfd0Sjosephpu PetscReal *v0, *J, *invJ, detJ, *coords, *xi0; 27080aecfd0Sjosephpu PetscInt *cellid; 27180aecfd0Sjosephpu const PetscReal *qpoints, *qweights; 272*19307e5cSMatthew G. Knepley PetscInt cStart, cEnd, c, Nq, q, dim, Nfc; 273*19307e5cSMatthew G. Knepley const char **coordFields, *cellid; 27480aecfd0Sjosephpu 27580aecfd0Sjosephpu PetscFunctionBeginUser; 27680aecfd0Sjosephpu PetscCall(DMGetDimension(dm, &dim)); 27780aecfd0Sjosephpu PetscCall(DMGetDS(dm, &prob)); 27880aecfd0Sjosephpu PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 27980aecfd0Sjosephpu PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 28080aecfd0Sjosephpu PetscCall(PetscFEGetQuadrature(fe, &quad)); 28180aecfd0Sjosephpu PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, &qpoints, &qweights)); 28280aecfd0Sjosephpu PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 28380aecfd0Sjosephpu PetscCall(DMSetType(*sw, DMSWARM)); 28480aecfd0Sjosephpu PetscCall(DMSetDimension(*sw, dim)); 28580aecfd0Sjosephpu PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 28680aecfd0Sjosephpu PetscCall(DMSwarmSetCellDM(*sw, dm)); 287*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetCellDMActive(sw, &celldm)); 288*19307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 289*19307e5cSMatthew G. Knepley PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 290*19307e5cSMatthew G. Knepley PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 29180aecfd0Sjosephpu PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_REAL)); 29280aecfd0Sjosephpu PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 29380aecfd0Sjosephpu PetscCall(DMSwarmSetLocalSizes(*sw, (cEnd - cStart) * Nq, 0)); 29480aecfd0Sjosephpu PetscCall(DMSetFromOptions(*sw)); 29580aecfd0Sjosephpu PetscCall(PetscMalloc4(dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 29680aecfd0Sjosephpu for (c = 0; c < dim; c++) xi0[c] = -1.; 297*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 298*19307e5cSMatthew G. Knepley PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 29980aecfd0Sjosephpu PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 30080aecfd0Sjosephpu for (c = cStart; c < cEnd; ++c) { 30180aecfd0Sjosephpu for (q = 0; q < Nq; ++q) { 30280aecfd0Sjosephpu PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 303*19307e5cSMatthew G. Knepley swarm_cellid[c * Nq + q] = c; 30480aecfd0Sjosephpu CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], &coords[(c * Nq + q) * dim]); 30580aecfd0Sjosephpu PetscCall(linear(dim, 0.0, &coords[(c * Nq + q) * dim], 1, &vals[c * Nq + q], (void *)user)); 30680aecfd0Sjosephpu vals[c * Nq + q] *= qweights[q] * detJ; 30780aecfd0Sjosephpu } 30880aecfd0Sjosephpu } 309*19307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 310*19307e5cSMatthew G. Knepley PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 31180aecfd0Sjosephpu PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 31280aecfd0Sjosephpu PetscCall(PetscFree4(xi0, v0, J, invJ)); 31380aecfd0Sjosephpu PetscCall(DMSwarmMigrate(*sw, PETSC_FALSE)); 31480aecfd0Sjosephpu PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 315d52c2f21SMatthew G. Knepley PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 31680aecfd0Sjosephpu PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 31780aecfd0Sjosephpu PetscFunctionReturn(PETSC_SUCCESS); 31880aecfd0Sjosephpu } 31980aecfd0Sjosephpu 320d71ae5a4SJacob Faibussowitsch static PetscErrorCode computeParticleMoments(DM sw, PetscReal moments[3], AppCtx *user) 321d71ae5a4SJacob Faibussowitsch { 322c4762a1bSJed Brown DM dm; 323c4762a1bSJed Brown const PetscReal *coords; 324c4762a1bSJed Brown const PetscScalar *w; 325c4762a1bSJed Brown PetscReal mom[3] = {0.0, 0.0, 0.0}; 326c4762a1bSJed Brown PetscInt cell, cStart, cEnd, dim; 327c4762a1bSJed Brown 328c4762a1bSJed Brown PetscFunctionBeginUser; 3299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(sw, &dim)); 3309566063dSJacob Faibussowitsch PetscCall(DMSwarmGetCellDM(sw, &dm)); 3319566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 3329566063dSJacob Faibussowitsch PetscCall(DMSwarmSortGetAccess(sw)); 3339566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 3349566063dSJacob Faibussowitsch PetscCall(DMSwarmGetField(sw, "w_q", NULL, NULL, (void **)&w)); 335c4762a1bSJed Brown for (cell = cStart; cell < cEnd; ++cell) { 336c4762a1bSJed Brown PetscInt *pidx; 337c4762a1bSJed Brown PetscInt Np, p, d; 338c4762a1bSJed Brown 3399566063dSJacob Faibussowitsch PetscCall(DMSwarmSortGetPointsPerCell(sw, cell, &Np, &pidx)); 340c4762a1bSJed Brown for (p = 0; p < Np; ++p) { 341c4762a1bSJed Brown const PetscInt idx = pidx[p]; 342c4762a1bSJed Brown const PetscReal *c = &coords[idx * dim]; 343c4762a1bSJed Brown 344c4762a1bSJed Brown mom[0] += PetscRealPart(w[idx]); 345c4762a1bSJed Brown mom[1] += PetscRealPart(w[idx]) * c[0]; 346c4762a1bSJed Brown for (d = 0; d < dim; ++d) mom[2] += PetscRealPart(w[idx]) * c[d] * c[d]; 347c4762a1bSJed Brown } 348fe11354eSMatthew G. Knepley PetscCall(DMSwarmSortRestorePointsPerCell(sw, cell, &Np, &pidx)); 349c4762a1bSJed Brown } 3509566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 3519566063dSJacob Faibussowitsch PetscCall(DMSwarmRestoreField(sw, "w_q", NULL, NULL, (void **)&w)); 3529566063dSJacob Faibussowitsch PetscCall(DMSwarmSortRestoreAccess(sw)); 353462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(mom, moments, 3, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)sw))); 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355c4762a1bSJed Brown } 356c4762a1bSJed Brown 357d71ae5a4SJacob Faibussowitsch static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 358d71ae5a4SJacob Faibussowitsch { 359c4762a1bSJed Brown f0[0] = u[0]; 360c4762a1bSJed Brown } 361c4762a1bSJed Brown 362d71ae5a4SJacob Faibussowitsch static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 363d71ae5a4SJacob Faibussowitsch { 364c4762a1bSJed Brown f0[0] = x[0] * u[0]; 365c4762a1bSJed Brown } 366c4762a1bSJed Brown 367d71ae5a4SJacob Faibussowitsch static void f0_r2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 368d71ae5a4SJacob Faibussowitsch { 369c4762a1bSJed Brown PetscInt d; 370c4762a1bSJed Brown 371c4762a1bSJed Brown f0[0] = 0.0; 372c4762a1bSJed Brown for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0]; 373c4762a1bSJed Brown } 374c4762a1bSJed Brown 375d71ae5a4SJacob Faibussowitsch static PetscErrorCode computeFEMMoments(DM dm, Vec u, PetscReal moments[3], AppCtx *user) 376d71ae5a4SJacob Faibussowitsch { 377c4762a1bSJed Brown PetscDS prob; 378c4762a1bSJed Brown PetscScalar mom; 379c4762a1bSJed Brown 380c4762a1bSJed Brown PetscFunctionBeginUser; 3819566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &prob)); 3829566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_1)); 3839566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 384c4762a1bSJed Brown moments[0] = PetscRealPart(mom); 3859566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_x)); 3869566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 387c4762a1bSJed Brown moments[1] = PetscRealPart(mom); 3889566063dSJacob Faibussowitsch PetscCall(PetscDSSetObjective(prob, 0, &f0_r2)); 3899566063dSJacob Faibussowitsch PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 390c4762a1bSJed Brown moments[2] = PetscRealPart(mom); 3913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 392c4762a1bSJed Brown } 393c4762a1bSJed Brown 394fc3eb83cSMatthew G. Knepley static PetscErrorCode TestL2ProjectionParticlesToField(DM dm, DM sw, Vec fhat, AppCtx *user) 395d71ae5a4SJacob Faibussowitsch { 396fc3eb83cSMatthew G. Knepley const char *fieldnames[1] = {"w_q"}; 397fc3eb83cSMatthew G. Knepley Vec fields[1] = {fhat}; 398fc3eb83cSMatthew G. Knepley PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 399fc3eb83cSMatthew G. Knepley PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 400c4762a1bSJed Brown 401c4762a1bSJed Brown PetscFunctionBeginUser; 402953494dbSMatthew G. Knepley PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_FORWARD)); 403c4762a1bSJed Brown 404c4762a1bSJed Brown /* Check moments of field */ 4059566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 4069566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 407fc3eb83cSMatthew G. Knepley PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 408fc3eb83cSMatthew G. Knepley for (PetscInt m = 0; m < 3; ++m) { 409fc3eb83cSMatthew G. Knepley PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 410fc3eb83cSMatthew G. Knepley user->momentTol); 411c4762a1bSJed Brown } 4123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 413c4762a1bSJed Brown } 414c4762a1bSJed Brown 415fc3eb83cSMatthew G. Knepley static PetscErrorCode TestL2ProjectionFieldToParticles(DM dm, DM sw, Vec fhat, AppCtx *user) 416d71ae5a4SJacob Faibussowitsch { 417fc3eb83cSMatthew G. Knepley const char *fieldnames[1] = {"w_q"}; 418fc3eb83cSMatthew G. Knepley Vec fields[1] = {fhat}; 419fc3eb83cSMatthew G. Knepley PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 420fc3eb83cSMatthew G. Knepley PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 421c4762a1bSJed Brown 422c4762a1bSJed Brown PetscFunctionBeginUser; 423953494dbSMatthew G. Knepley PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_REVERSE)); 424c4762a1bSJed Brown 425c4762a1bSJed Brown /* Check moments */ 4269566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 4279566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 428fc3eb83cSMatthew G. Knepley PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 429fc3eb83cSMatthew G. Knepley for (PetscInt m = 0; m < 3; ++m) { 430fc3eb83cSMatthew G. Knepley PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 431fc3eb83cSMatthew G. Knepley user->momentTol); 432c4762a1bSJed Brown } 4333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 434c4762a1bSJed Brown } 435c4762a1bSJed Brown 436c4762a1bSJed Brown /* Interpolate the gradient of an FEM (FVM) field. Code repurposed from DMPlexComputeGradientClementInterpolant */ 437d71ae5a4SJacob Faibussowitsch static PetscErrorCode InterpolateGradient(DM dm, Vec locX, Vec locC) 438d71ae5a4SJacob Faibussowitsch { 439c4762a1bSJed Brown DM_Plex *mesh = (DM_Plex *)dm->data; 440c4762a1bSJed Brown PetscInt debug = mesh->printFEM; 441c4762a1bSJed Brown DM dmC; 442c4762a1bSJed Brown PetscSection section; 443c4762a1bSJed Brown PetscQuadrature quad = NULL; 444c4762a1bSJed Brown PetscScalar *interpolant, *gradsum; 445c4762a1bSJed Brown PetscFEGeom fegeom; 446c4762a1bSJed Brown PetscReal *coords; 447c4762a1bSJed Brown const PetscReal *quadPoints, *quadWeights; 448c4762a1bSJed Brown PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 449c4762a1bSJed Brown 450c4762a1bSJed Brown PetscFunctionBegin; 4519566063dSJacob Faibussowitsch PetscCall(VecGetDM(locC, &dmC)); 4529566063dSJacob Faibussowitsch PetscCall(VecSet(locC, 0.0)); 4539566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 4549566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &coordDim)); 455c4762a1bSJed Brown fegeom.dimEmbed = coordDim; 4569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 4579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &numFields)); 458c4762a1bSJed Brown for (field = 0; field < numFields; ++field) { 459c4762a1bSJed Brown PetscObject obj; 460c4762a1bSJed Brown PetscClassId id; 461c4762a1bSJed Brown PetscInt Nc; 462c4762a1bSJed Brown 4639566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 4649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 465c4762a1bSJed Brown if (id == PETSCFE_CLASSID) { 466c4762a1bSJed Brown PetscFE fe = (PetscFE)obj; 467c4762a1bSJed Brown 4689566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &quad)); 4699566063dSJacob Faibussowitsch PetscCall(PetscFEGetNumComponents(fe, &Nc)); 470c4762a1bSJed Brown } else if (id == PETSCFV_CLASSID) { 471c4762a1bSJed Brown PetscFV fv = (PetscFV)obj; 472c4762a1bSJed Brown 4739566063dSJacob Faibussowitsch PetscCall(PetscFVGetQuadrature(fv, &quad)); 4749566063dSJacob Faibussowitsch PetscCall(PetscFVGetNumComponents(fv, &Nc)); 47563a3b9bcSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 476c4762a1bSJed Brown numComponents += Nc; 477c4762a1bSJed Brown } 4789566063dSJacob Faibussowitsch PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 47963a3b9bcSJacob Faibussowitsch PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 4809566063dSJacob Faibussowitsch PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 4819566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 4829566063dSJacob Faibussowitsch PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 483c4762a1bSJed Brown for (v = vStart; v < vEnd; ++v) { 484c4762a1bSJed Brown PetscInt *star = NULL; 485c4762a1bSJed Brown PetscInt starSize, st, d, fc; 486c4762a1bSJed Brown 4879566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 4889566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 489c4762a1bSJed Brown for (st = 0; st < starSize * 2; st += 2) { 490c4762a1bSJed Brown const PetscInt cell = star[st]; 491c4762a1bSJed Brown PetscScalar *grad = &gradsum[coordDim * numComponents]; 492c4762a1bSJed Brown PetscScalar *x = NULL; 493c4762a1bSJed Brown 494c4762a1bSJed Brown if ((cell < cStart) || (cell >= cEnd)) continue; 4959566063dSJacob Faibussowitsch PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 4969566063dSJacob Faibussowitsch PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 497c4762a1bSJed Brown for (field = 0, fieldOffset = 0; field < numFields; ++field) { 498c4762a1bSJed Brown PetscObject obj; 499c4762a1bSJed Brown PetscClassId id; 500c4762a1bSJed Brown PetscInt Nb, Nc, q, qc = 0; 501c4762a1bSJed Brown 5029566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 5039566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 5049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5059371c9d4SSatish Balay if (id == PETSCFE_CLASSID) { 5069371c9d4SSatish Balay PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 5079371c9d4SSatish Balay PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 5089371c9d4SSatish Balay } else if (id == PETSCFV_CLASSID) { 5099371c9d4SSatish Balay PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 5109371c9d4SSatish Balay Nb = 1; 5119371c9d4SSatish Balay } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 512c4762a1bSJed Brown for (q = 0; q < Nq; ++q) { 51363a3b9bcSJacob Faibussowitsch PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 5149566063dSJacob Faibussowitsch if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &fegeom, q, interpolant)); 51563a3b9bcSJacob Faibussowitsch else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 516c4762a1bSJed Brown for (fc = 0; fc < Nc; ++fc) { 517c4762a1bSJed Brown const PetscReal wt = quadWeights[q * qNc + qc + fc]; 518c4762a1bSJed Brown 519c4762a1bSJed Brown for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 520c4762a1bSJed Brown } 521c4762a1bSJed Brown } 522c4762a1bSJed Brown fieldOffset += Nb; 523c4762a1bSJed Brown } 5249566063dSJacob Faibussowitsch PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 525c4762a1bSJed Brown for (fc = 0; fc < numComponents; ++fc) { 526ad540459SPierre Jolivet for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 527c4762a1bSJed Brown } 528c4762a1bSJed Brown if (debug) { 52963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " gradient: [", cell)); 530c4762a1bSJed Brown for (fc = 0; fc < numComponents; ++fc) { 531c4762a1bSJed Brown for (d = 0; d < coordDim; ++d) { 5329566063dSJacob Faibussowitsch if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 5339566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 534c4762a1bSJed Brown } 535c4762a1bSJed Brown } 5369566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 537c4762a1bSJed Brown } 538c4762a1bSJed Brown } 5399566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 5409566063dSJacob Faibussowitsch PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 541c4762a1bSJed Brown } 5429566063dSJacob Faibussowitsch PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 5433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 544c4762a1bSJed Brown } 545c4762a1bSJed Brown 546d71ae5a4SJacob Faibussowitsch static PetscErrorCode TestFieldGradientProjection(DM dm, DM sw, AppCtx *user) 547d71ae5a4SJacob Faibussowitsch { 548c4762a1bSJed Brown MPI_Comm comm; 549c4762a1bSJed Brown KSP ksp; 550c4762a1bSJed Brown Mat M; /* FEM mass matrix */ 551c4762a1bSJed Brown Mat M_p; /* Particle mass matrix */ 552c4762a1bSJed Brown Vec f, rhs, fhat, grad; /* Particle field f, \int phi_i f, FEM field */ 553c4762a1bSJed Brown PetscReal pmoments[3]; /* \int f, \int x f, \int r^2 f */ 554c4762a1bSJed Brown PetscReal fmoments[3]; /* \int \hat f, \int x \hat f, \int r^2 \hat f */ 555c4762a1bSJed Brown PetscInt m; 556c4762a1bSJed Brown 557c4762a1bSJed Brown PetscFunctionBeginUser; 5589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5599566063dSJacob Faibussowitsch PetscCall(KSPCreate(comm, &ksp)); 5609566063dSJacob Faibussowitsch PetscCall(KSPSetOptionsPrefix(ksp, "ptof_")); 5619566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &fhat)); 5629566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &rhs)); 5639566063dSJacob Faibussowitsch PetscCall(DMGetGlobalVector(dm, &grad)); 564c4762a1bSJed Brown 5659566063dSJacob Faibussowitsch PetscCall(DMCreateMassMatrix(sw, dm, &M_p)); 5669566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M_p, NULL, "-M_p_view")); 567c4762a1bSJed Brown 568c4762a1bSJed Brown /* make particle weight vector */ 5699566063dSJacob Faibussowitsch PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &f)); 570c4762a1bSJed Brown 571c4762a1bSJed Brown /* create matrix RHS vector */ 5729566063dSJacob Faibussowitsch PetscCall(MatMultTranspose(M_p, f, rhs)); 5739566063dSJacob Faibussowitsch PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &f)); 5749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)rhs, "rhs")); 5759566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 576c4762a1bSJed Brown 5779566063dSJacob Faibussowitsch PetscCall(DMCreateMatrix(dm, &M)); 5789566063dSJacob Faibussowitsch PetscCall(DMPlexSNESComputeJacobianFEM(dm, fhat, M, M, user)); 579c4762a1bSJed Brown 5809566063dSJacob Faibussowitsch PetscCall(InterpolateGradient(dm, fhat, grad)); 581c4762a1bSJed Brown 5829566063dSJacob Faibussowitsch PetscCall(MatViewFromOptions(M, NULL, "-M_view")); 5839566063dSJacob Faibussowitsch PetscCall(KSPSetOperators(ksp, M, M)); 5849566063dSJacob Faibussowitsch PetscCall(KSPSetFromOptions(ksp)); 5859566063dSJacob Faibussowitsch PetscCall(KSPSolve(ksp, rhs, grad)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)fhat, "fhat")); 5879566063dSJacob Faibussowitsch PetscCall(VecViewFromOptions(fhat, NULL, "-fhat_view")); 588c4762a1bSJed Brown 589c4762a1bSJed Brown /* Check moments of field */ 5909566063dSJacob Faibussowitsch PetscCall(computeParticleMoments(sw, pmoments, user)); 5919566063dSJacob Faibussowitsch PetscCall(computeFEMMoments(dm, grad, fmoments, user)); 5929566063dSJacob Faibussowitsch PetscCall(PetscPrintf(comm, "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 593c4762a1bSJed Brown for (m = 0; m < 3; ++m) { 5941dca8a05SBarry Smith PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, comm, PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), user->momentTol); 595c4762a1bSJed Brown } 596c4762a1bSJed Brown 5979566063dSJacob Faibussowitsch PetscCall(KSPDestroy(&ksp)); 5989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M)); 5999566063dSJacob Faibussowitsch PetscCall(MatDestroy(&M_p)); 6009566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &fhat)); 6019566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &rhs)); 6029566063dSJacob Faibussowitsch PetscCall(DMRestoreGlobalVector(dm, &grad)); 6033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 604c4762a1bSJed Brown } 605c4762a1bSJed Brown 60680aecfd0Sjosephpu static PetscErrorCode TestL2Projection_Shape(DM dm, DM sw, AppCtx *user) 60780aecfd0Sjosephpu { 60880aecfd0Sjosephpu PetscErrorCode (*funcs[1])(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 60980aecfd0Sjosephpu KSP ksp; 61080aecfd0Sjosephpu Mat mass; 61180aecfd0Sjosephpu Vec u, rhs, uproj; 61280aecfd0Sjosephpu void *ctxs[1]; 61380aecfd0Sjosephpu PetscReal error; 61480aecfd0Sjosephpu 61580aecfd0Sjosephpu PetscFunctionBeginUser; 61680aecfd0Sjosephpu ctxs[0] = (void *)user; 61780aecfd0Sjosephpu funcs[0] = linear; 61880aecfd0Sjosephpu 61980aecfd0Sjosephpu PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &u)); 62080aecfd0Sjosephpu PetscCall(VecViewFromOptions(u, NULL, "-f_view")); 62180aecfd0Sjosephpu PetscCall(DMGetGlobalVector(dm, &rhs)); 62280aecfd0Sjosephpu PetscCall(DMCreateMassMatrix(sw, dm, &mass)); 62380aecfd0Sjosephpu PetscCall(MatMultTranspose(mass, u, rhs)); 62480aecfd0Sjosephpu PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 62580aecfd0Sjosephpu PetscCall(MatDestroy(&mass)); 62680aecfd0Sjosephpu PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &u)); 62780aecfd0Sjosephpu PetscCall(DMGetGlobalVector(dm, &uproj)); 62880aecfd0Sjosephpu PetscCall(DMCreateMatrix(dm, &mass)); 62980aecfd0Sjosephpu PetscCall(DMPlexSNESComputeJacobianFEM(dm, uproj, mass, mass, user)); 63080aecfd0Sjosephpu PetscCall(MatViewFromOptions(mass, NULL, "-mass_mat_view")); 63180aecfd0Sjosephpu PetscCall(KSPCreate(PETSC_COMM_WORLD, &ksp)); 63280aecfd0Sjosephpu PetscCall(KSPSetOperators(ksp, mass, mass)); 63380aecfd0Sjosephpu PetscCall(KSPSetFromOptions(ksp)); 63480aecfd0Sjosephpu PetscCall(KSPSolve(ksp, rhs, uproj)); 63580aecfd0Sjosephpu PetscCall(KSPDestroy(&ksp)); 63680aecfd0Sjosephpu PetscCall(PetscObjectSetName((PetscObject)uproj, "Full Projection")); 63780aecfd0Sjosephpu PetscCall(VecViewFromOptions(uproj, NULL, "-proj_vec_view")); 63880aecfd0Sjosephpu PetscCall(DMComputeL2Diff(dm, 0.0, funcs, ctxs, uproj, &error)); 63980aecfd0Sjosephpu PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Projected L2 Error: %g\n", (double)error)); 64080aecfd0Sjosephpu PetscCall(MatDestroy(&mass)); 64180aecfd0Sjosephpu PetscCall(DMRestoreGlobalVector(dm, &rhs)); 64280aecfd0Sjosephpu PetscCall(DMRestoreGlobalVector(dm, &uproj)); 64380aecfd0Sjosephpu PetscFunctionReturn(PETSC_SUCCESS); 64480aecfd0Sjosephpu } 64580aecfd0Sjosephpu 646d71ae5a4SJacob Faibussowitsch int main(int argc, char *argv[]) 647d71ae5a4SJacob Faibussowitsch { 648c4762a1bSJed Brown MPI_Comm comm; 649c4762a1bSJed Brown DM dm, sw; 650c4762a1bSJed Brown AppCtx user; 651c4762a1bSJed Brown 652327415f7SBarry Smith PetscFunctionBeginUser; 6539566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 654c4762a1bSJed Brown comm = PETSC_COMM_WORLD; 6559566063dSJacob Faibussowitsch PetscCall(ProcessOptions(comm, &user)); 6569566063dSJacob Faibussowitsch PetscCall(CreateMesh(comm, &dm, &user)); 6579566063dSJacob Faibussowitsch PetscCall(CreateFEM(dm, &user)); 65880aecfd0Sjosephpu if (!user.shape) { 659fc3eb83cSMatthew G. Knepley Vec fhat; 660fc3eb83cSMatthew G. Knepley 6619566063dSJacob Faibussowitsch PetscCall(CreateParticles(dm, &sw, &user)); 662fc3eb83cSMatthew G. Knepley PetscCall(DMGetGlobalVector(dm, &fhat)); 663fc3eb83cSMatthew G. Knepley PetscCall(TestL2ProjectionParticlesToField(dm, sw, fhat, &user)); 664fc3eb83cSMatthew G. Knepley PetscCall(TestL2ProjectionFieldToParticles(dm, sw, fhat, &user)); 6659566063dSJacob Faibussowitsch PetscCall(TestFieldGradientProjection(dm, sw, &user)); 666fc3eb83cSMatthew G. Knepley PetscCall(DMRestoreGlobalVector(dm, &fhat)); 66780aecfd0Sjosephpu } else { 66880aecfd0Sjosephpu PetscCall(CreateParticles_Shape(dm, &sw, &user)); 66980aecfd0Sjosephpu PetscCall(TestL2Projection_Shape(dm, sw, &user)); 67080aecfd0Sjosephpu } 6719566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 6729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&sw)); 6739566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 674b122ec5aSJacob Faibussowitsch return 0; 675c4762a1bSJed Brown } 676c4762a1bSJed Brown 677c4762a1bSJed Brown /*TEST 678c4762a1bSJed Brown 679832e2b15SMatthew G. Knepley # Swarm does not handle complex or quad 680832e2b15SMatthew G. Knepley build: 681832e2b15SMatthew G. Knepley requires: !complex double 682832e2b15SMatthew G. Knepley 683c4762a1bSJed Brown test: 684c4762a1bSJed Brown suffix: proj_tri_0 685832e2b15SMatthew G. Knepley requires: triangle 686832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 687c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 688c4762a1bSJed Brown 689c4762a1bSJed Brown test: 690c4762a1bSJed Brown suffix: proj_tri_2_faces 691832e2b15SMatthew G. Knepley requires: triangle 692832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 693c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 694c4762a1bSJed Brown 695c4762a1bSJed Brown test: 696c4762a1bSJed Brown suffix: proj_quad_0 697832e2b15SMatthew G. Knepley requires: triangle 69830602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 699c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 700c4762a1bSJed Brown 701c4762a1bSJed Brown test: 702c4762a1bSJed Brown suffix: proj_quad_2_faces 703832e2b15SMatthew G. Knepley requires: triangle 70430602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 705c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 706c4762a1bSJed Brown 707c4762a1bSJed Brown test: 708c4762a1bSJed Brown suffix: proj_tri_5P 709832e2b15SMatthew G. Knepley requires: triangle 710832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 711c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 712c4762a1bSJed Brown 713c4762a1bSJed Brown test: 714c4762a1bSJed Brown suffix: proj_quad_5P 715832e2b15SMatthew G. Knepley requires: triangle 71630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 717c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 718c4762a1bSJed Brown 719c4762a1bSJed Brown test: 720c4762a1bSJed Brown suffix: proj_tri_mdx 721832e2b15SMatthew G. Knepley requires: triangle 722832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 723c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 724c4762a1bSJed Brown 725c4762a1bSJed Brown test: 726c4762a1bSJed Brown suffix: proj_tri_mdx_5P 727832e2b15SMatthew G. Knepley requires: triangle 728832e2b15SMatthew G. Knepley args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 729c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 730c4762a1bSJed Brown 731c4762a1bSJed Brown test: 732c4762a1bSJed Brown suffix: proj_tri_3d 733832e2b15SMatthew G. Knepley requires: ctetgen 73430602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 735c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 736c4762a1bSJed Brown 737c4762a1bSJed Brown test: 738c4762a1bSJed Brown suffix: proj_tri_3d_2_faces 739832e2b15SMatthew G. Knepley requires: ctetgen 74030602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 741c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 742c4762a1bSJed Brown 743c4762a1bSJed Brown test: 744c4762a1bSJed Brown suffix: proj_tri_3d_5P 745832e2b15SMatthew G. Knepley requires: ctetgen 74630602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 747c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 748c4762a1bSJed Brown 749c4762a1bSJed Brown test: 750c4762a1bSJed Brown suffix: proj_tri_3d_mdx 751832e2b15SMatthew G. Knepley requires: ctetgen 75230602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 753c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 754c4762a1bSJed Brown 755c4762a1bSJed Brown test: 756c4762a1bSJed Brown suffix: proj_tri_3d_mdx_5P 757832e2b15SMatthew G. Knepley requires: ctetgen 75830602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 759c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 760c4762a1bSJed Brown 761c4762a1bSJed Brown test: 762c4762a1bSJed Brown suffix: proj_tri_3d_mdx_2_faces 763832e2b15SMatthew G. Knepley requires: ctetgen 76430602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 765c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 766c4762a1bSJed Brown 767c4762a1bSJed Brown test: 768c4762a1bSJed Brown suffix: proj_tri_3d_mdx_5P_2_faces 769832e2b15SMatthew G. Knepley requires: ctetgen 77030602db0SMatthew G. Knepley args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 771c4762a1bSJed Brown filter: grep -v marker | grep -v atomic | grep -v usage 772c4762a1bSJed Brown 773832e2b15SMatthew G. Knepley test: 774832e2b15SMatthew G. Knepley suffix: proj_quad_lsqr_scale 775832e2b15SMatthew G. Knepley requires: !complex 77630602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 777832e2b15SMatthew G. Knepley -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 778832e2b15SMatthew G. Knepley -particlesPerCell 200 \ 779832e2b15SMatthew G. Knepley -ptof_pc_type lu \ 780832e2b15SMatthew G. Knepley -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type none 781832e2b15SMatthew G. Knepley 782832e2b15SMatthew G. Knepley test: 783832e2b15SMatthew G. Knepley suffix: proj_quad_lsqr_prec_scale 784832e2b15SMatthew G. Knepley requires: !complex 78530602db0SMatthew G. Knepley args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 786832e2b15SMatthew G. Knepley -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 787832e2b15SMatthew G. Knepley -particlesPerCell 200 \ 788832e2b15SMatthew G. Knepley -ptof_pc_type lu \ 789fc3eb83cSMatthew G. Knepley -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type bjacobi -ftop_sub_pc_type lu -ftop_sub_pc_factor_shift_type nonzero 79080aecfd0Sjosephpu test: 79180aecfd0Sjosephpu suffix: proj_shape_linear_tri_2d 79280aecfd0Sjosephpu requires: ctetgen triangle 79380aecfd0Sjosephpu args: -shape -dm_plex_box_faces 2,2\ 79480aecfd0Sjosephpu -dm_view -sw_view\ 79580aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 79680aecfd0Sjosephpu -pc_type lu 79780aecfd0Sjosephpu test: 79880aecfd0Sjosephpu suffix: proj_shape_linear_quad_2d 79980aecfd0Sjosephpu requires: ctetgen triangle 80080aecfd0Sjosephpu args: -shape -dm_plex_simplex 0 -dm_plex_box_faces 2,2\ 80180aecfd0Sjosephpu -dm_view -sw_view\ 80280aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 80380aecfd0Sjosephpu -pc_type lu 80480aecfd0Sjosephpu test: 80580aecfd0Sjosephpu suffix: proj_shape_linear_tri_3d 80680aecfd0Sjosephpu requires: ctetgen triangle 80780aecfd0Sjosephpu args: -shape -dm_plex_dim 3 -dm_plex_box_faces 2,2,2\ 80880aecfd0Sjosephpu -dm_view -sw_view\ 80980aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 81080aecfd0Sjosephpu -pc_type lu 81180aecfd0Sjosephpu test: 81280aecfd0Sjosephpu suffix: proj_shape_linear_quad_3d 81380aecfd0Sjosephpu requires: ctetgen triangle 81480aecfd0Sjosephpu args: -shape -dm_plex_dim 3 -dm_plex_simplex 0\ 81580aecfd0Sjosephpu -dm_plex_box_faces 2,2,2\ 81680aecfd0Sjosephpu -dm_view -sw_view\ 81780aecfd0Sjosephpu -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 81880aecfd0Sjosephpu -pc_type lu 819c4762a1bSJed Brown TEST*/ 820