1 static char help[] = "Tests L2 projection with DMSwarm using delta function particles and deposition of linear shape.\n"; 2 3 #include <petscdmplex.h> 4 #include <petscfe.h> 5 #include <petscdmswarm.h> 6 #include <petscds.h> 7 #include <petscksp.h> 8 #include <petsc/private/petscfeimpl.h> 9 typedef struct { 10 PetscReal L[3]; /* Dimensions of the mesh bounding box */ 11 PetscInt particlesPerCell; /* The number of partices per cell */ 12 PetscReal particleRelDx; /* Relative particle position perturbation compared to average cell diameter h */ 13 PetscReal meshRelDx; /* Relative vertex position perturbation compared to average cell diameter h */ 14 PetscInt k; /* Mode number for test function */ 15 PetscReal momentTol; /* Tolerance for checking moment conservation */ 16 PetscBool shape; 17 PetscErrorCode (*func)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 18 } AppCtx; 19 20 /* const char *const ex2FunctionTypes[] = {"linear","x2_x4","sin","ex2FunctionTypes","EX2_FUNCTION_",0}; */ 21 22 static PetscErrorCode linear(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 23 { 24 AppCtx *ctx = (AppCtx *)a_ctx; 25 PetscInt d; 26 27 u[0] = 0.0; 28 for (d = 0; d < dim; ++d) u[0] += x[d] / (ctx->L[d]); 29 return PETSC_SUCCESS; 30 } 31 32 static PetscErrorCode x2_x4(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 33 { 34 AppCtx *ctx = (AppCtx *)a_ctx; 35 PetscInt d; 36 37 u[0] = 1; 38 for (d = 0; d < dim; ++d) u[0] *= PetscSqr(x[d]) * PetscSqr(ctx->L[d]) - PetscPowRealInt(x[d], 4); 39 return PETSC_SUCCESS; 40 } 41 42 static PetscErrorCode sinx(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *a_ctx) 43 { 44 AppCtx *ctx = (AppCtx *)a_ctx; 45 46 u[0] = PetscSinScalar(2 * PETSC_PI * ctx->k * x[0] / (ctx->L[0])); 47 return PETSC_SUCCESS; 48 } 49 50 static PetscErrorCode ProcessOptions(MPI_Comm comm, AppCtx *options) 51 { 52 char fstring[PETSC_MAX_PATH_LEN] = "linear"; 53 PetscBool flag; 54 55 PetscFunctionBeginUser; 56 options->particlesPerCell = 1; 57 options->k = 1; 58 options->particleRelDx = 1.e-20; 59 options->meshRelDx = 1.e-20; 60 options->momentTol = 100. * PETSC_MACHINE_EPSILON; 61 options->shape = PETSC_FALSE; 62 63 PetscOptionsBegin(comm, "", "L2 Projection Options", "DMPLEX"); 64 PetscCall(PetscOptionsBool("-shape", "Test linear function projection", "ex2.c", options->shape, &options->shape, NULL)); 65 PetscCall(PetscOptionsInt("-k", "Mode number of test", "ex2.c", options->k, &options->k, NULL)); 66 PetscCall(PetscOptionsInt("-particlesPerCell", "Number of particles per cell", "ex2.c", options->particlesPerCell, &options->particlesPerCell, NULL)); 67 PetscCall(PetscOptionsReal("-particle_perturbation", "Relative perturbation of particles (0,1)", "ex2.c", options->particleRelDx, &options->particleRelDx, NULL)); 68 PetscCall(PetscOptionsReal("-mesh_perturbation", "Relative perturbation of mesh points (0,1)", "ex2.c", options->meshRelDx, &options->meshRelDx, NULL)); 69 PetscCall(PetscOptionsString("-function", "Name of test function", "ex2.c", fstring, fstring, sizeof(fstring), NULL)); 70 PetscCall(PetscStrcmp(fstring, "linear", &flag)); 71 if (flag) { 72 options->func = linear; 73 } else { 74 PetscCall(PetscStrcmp(fstring, "sin", &flag)); 75 if (flag) { 76 options->func = sinx; 77 } else { 78 PetscCall(PetscStrcmp(fstring, "x2_x4", &flag)); 79 options->func = x2_x4; 80 PetscCheck(flag, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unknown function %s", fstring); 81 } 82 } 83 PetscCall(PetscOptionsReal("-moment_tol", "Tolerance for moment checks", "ex2.c", options->momentTol, &options->momentTol, NULL)); 84 PetscOptionsEnd(); 85 PetscFunctionReturn(PETSC_SUCCESS); 86 } 87 88 static PetscErrorCode PerturbVertices(DM dm, AppCtx *user) 89 { 90 PetscRandom rnd; 91 PetscReal interval = user->meshRelDx; 92 Vec coordinates; 93 PetscScalar *coords; 94 PetscReal *hh, low[3], high[3]; 95 PetscInt d, cdim, cEnd, N, p, bs; 96 97 PetscFunctionBeginUser; 98 PetscCall(DMGetBoundingBox(dm, low, high)); 99 PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &cEnd)); 100 PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 101 PetscCall(PetscRandomSetInterval(rnd, -interval, interval)); 102 PetscCall(PetscRandomSetFromOptions(rnd)); 103 PetscCall(DMGetCoordinatesLocal(dm, &coordinates)); 104 PetscCall(DMGetCoordinateDim(dm, &cdim)); 105 PetscCall(PetscCalloc1(cdim, &hh)); 106 for (d = 0; d < cdim; ++d) hh[d] = (user->L[d]) / PetscPowReal(cEnd, 1. / cdim); 107 PetscCall(VecGetLocalSize(coordinates, &N)); 108 PetscCall(VecGetBlockSize(coordinates, &bs)); 109 PetscCheck(bs == cdim, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Coordinate vector has wrong block size %" PetscInt_FMT " != %" PetscInt_FMT, bs, cdim); 110 PetscCall(VecGetArray(coordinates, &coords)); 111 for (p = 0; p < N; p += cdim) { 112 PetscScalar *coord = &coords[p], value; 113 114 for (d = 0; d < cdim; ++d) { 115 PetscCall(PetscRandomGetValue(rnd, &value)); 116 coord[d] = PetscMax(low[d], PetscMin(high[d], PetscRealPart(coord[d] + value * hh[d]))); 117 } 118 } 119 PetscCall(VecRestoreArray(coordinates, &coords)); 120 PetscCall(PetscRandomDestroy(&rnd)); 121 PetscCall(PetscFree(hh)); 122 PetscFunctionReturn(PETSC_SUCCESS); 123 } 124 125 static PetscErrorCode CreateMesh(MPI_Comm comm, DM *dm, AppCtx *user) 126 { 127 PetscReal low[3], high[3]; 128 PetscInt cdim, d; 129 130 PetscFunctionBeginUser; 131 PetscCall(DMCreate(comm, dm)); 132 PetscCall(DMSetType(*dm, DMPLEX)); 133 PetscCall(DMSetFromOptions(*dm)); 134 PetscCall(DMViewFromOptions(*dm, NULL, "-dm_view")); 135 136 PetscCall(DMGetCoordinateDim(*dm, &cdim)); 137 PetscCall(DMGetBoundingBox(*dm, low, high)); 138 for (d = 0; d < cdim; ++d) user->L[d] = high[d] - low[d]; 139 PetscCall(PerturbVertices(*dm, user)); 140 PetscFunctionReturn(PETSC_SUCCESS); 141 } 142 143 static void identity(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, PetscReal u_tShift, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar g0[]) 144 { 145 g0[0] = 1.0; 146 } 147 148 static PetscErrorCode CreateFEM(DM dm, AppCtx *user) 149 { 150 PetscFE fe; 151 PetscDS ds; 152 DMPolytopeType ct; 153 PetscInt dim, cStart; 154 155 PetscFunctionBeginUser; 156 PetscCall(DMGetDimension(dm, &dim)); 157 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 158 PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 159 PetscCall(PetscFECreateByCell(PetscObjectComm((PetscObject)dm), dim, 1, ct, NULL, -1, &fe)); 160 PetscCall(PetscObjectSetName((PetscObject)fe, "fe")); 161 PetscCall(DMSetField(dm, 0, NULL, (PetscObject)fe)); 162 PetscCall(DMCreateDS(dm)); 163 PetscCall(PetscFEDestroy(&fe)); 164 /* Setup to form mass matrix */ 165 PetscCall(DMGetDS(dm, &ds)); 166 PetscCall(PetscDSSetJacobian(ds, 0, 0, identity, NULL, NULL, NULL)); 167 PetscFunctionReturn(PETSC_SUCCESS); 168 } 169 170 static PetscErrorCode CreateParticles(DM dm, DM *sw, AppCtx *user) 171 { 172 DMSwarmCellDM celldm; 173 PetscRandom rnd, rndp; 174 PetscReal interval = user->particleRelDx; 175 DMPolytopeType ct; 176 PetscBool simplex; 177 PetscScalar value, *vals; 178 PetscReal *centroid, *coords, *xi0, *v0, *J, *invJ, detJ; 179 PetscInt *swarm_cellid; 180 PetscInt Ncell, Np = user->particlesPerCell, p, cStart, c, dim, d, Nfc; 181 const char **coordFields, *cellid; 182 183 PetscFunctionBeginUser; 184 PetscCall(DMGetDimension(dm, &dim)); 185 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 186 PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 187 simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 188 PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 189 PetscCall(DMSetType(*sw, DMSWARM)); 190 PetscCall(DMSetDimension(*sw, dim)); 191 PetscCall(DMSwarmGetCellDMActive(sw, &celldm)); 192 PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 193 PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 194 PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 195 196 PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rnd)); 197 PetscCall(PetscRandomSetInterval(rnd, -1.0, 1.0)); 198 PetscCall(PetscRandomSetFromOptions(rnd)); 199 PetscCall(PetscRandomCreate(PetscObjectComm((PetscObject)dm), &rndp)); 200 PetscCall(PetscRandomSetInterval(rndp, -interval, interval)); 201 PetscCall(PetscRandomSetFromOptions(rndp)); 202 203 PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 204 PetscCall(DMSwarmSetCellDM(*sw, dm)); 205 PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_SCALAR)); 206 PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 207 PetscCall(DMPlexGetHeightStratum(dm, 0, NULL, &Ncell)); 208 PetscCall(DMSwarmSetLocalSizes(*sw, Ncell * Np, 0)); 209 PetscCall(DMSetFromOptions(*sw)); 210 PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 211 PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 212 PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 213 214 PetscCall(PetscMalloc5(dim, ¢roid, dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 215 for (c = 0; c < Ncell; ++c) { 216 if (Np == 1) { 217 PetscCall(DMPlexComputeCellGeometryFVM(dm, c, NULL, centroid, NULL)); 218 swarm_cellid[c] = c; 219 for (d = 0; d < dim; ++d) coords[c * dim + d] = centroid[d]; 220 } else { 221 PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); /* affine */ 222 for (d = 0; d < dim; ++d) xi0[d] = -1.0; 223 for (p = 0; p < Np; ++p) { 224 const PetscInt n = c * Np + p; 225 PetscReal sum = 0.0, refcoords[3]; 226 227 swarm_cellid[n] = c; 228 for (d = 0; d < dim; ++d) { 229 PetscCall(PetscRandomGetValue(rnd, &value)); 230 refcoords[d] = PetscRealPart(value); 231 sum += refcoords[d]; 232 } 233 if (simplex && sum > 0.0) 234 for (d = 0; d < dim; ++d) refcoords[d] -= PetscSqrtReal(dim) * sum; 235 CoordinatesRefToReal(dim, dim, xi0, v0, J, refcoords, &coords[n * dim]); 236 } 237 } 238 } 239 PetscCall(PetscFree5(centroid, xi0, v0, J, invJ)); 240 for (c = 0; c < Ncell; ++c) { 241 for (p = 0; p < Np; ++p) { 242 const PetscInt n = c * Np + p; 243 244 for (d = 0; d < dim; ++d) { 245 PetscCall(PetscRandomGetValue(rndp, &value)); 246 coords[n * dim + d] += PetscRealPart(value); 247 } 248 PetscCall(user->func(dim, 0.0, &coords[n * dim], 1, &vals[c], user)); 249 } 250 } 251 PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 252 PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 253 PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 254 PetscCall(PetscRandomDestroy(&rnd)); 255 PetscCall(PetscRandomDestroy(&rndp)); 256 PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 257 PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 258 PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 259 PetscFunctionReturn(PETSC_SUCCESS); 260 } 261 262 static PetscErrorCode CreateParticles_Shape(DM dm, DM *sw, AppCtx *user) 263 { 264 DMSwarmCellDM celldm; 265 PetscDS prob; 266 PetscFE fe; 267 PetscQuadrature quad; 268 PetscScalar *vals; 269 PetscReal *v0, *J, *invJ, detJ, *coords, *xi0; 270 PetscInt *cellid; 271 const PetscReal *qpoints, *qweights; 272 PetscInt cStart, cEnd, c, Nq, q, dim, Nfc; 273 const char **coordFields, *cellid; 274 275 PetscFunctionBeginUser; 276 PetscCall(DMGetDimension(dm, &dim)); 277 PetscCall(DMGetDS(dm, &prob)); 278 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 279 PetscCall(PetscDSGetDiscretization(prob, 0, (PetscObject *)&fe)); 280 PetscCall(PetscFEGetQuadrature(fe, &quad)); 281 PetscCall(PetscQuadratureGetData(quad, NULL, NULL, &Nq, &qpoints, &qweights)); 282 PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), sw)); 283 PetscCall(DMSetType(*sw, DMSWARM)); 284 PetscCall(DMSetDimension(*sw, dim)); 285 PetscCall(DMSwarmSetType(*sw, DMSWARM_PIC)); 286 PetscCall(DMSwarmSetCellDM(*sw, dm)); 287 PetscCall(DMSwarmGetCellDMActive(sw, &celldm)); 288 PetscCall(DMSwarmCellDMGetCellID(celldm, &cellid)); 289 PetscCall(DMSwarmCellDMGetCoordinateFields(celldm, &Nfc, &coordFields)); 290 PetscCheck(Nfc == 1, PetscObjectComm((PetscObject)sw), PETSC_ERR_SUP, "We only support a single coordinate field right now, not %" PetscInt_FMT, Nfc); 291 PetscCall(DMSwarmRegisterPetscDatatypeField(*sw, "w_q", 1, PETSC_REAL)); 292 PetscCall(DMSwarmFinalizeFieldRegister(*sw)); 293 PetscCall(DMSwarmSetLocalSizes(*sw, (cEnd - cStart) * Nq, 0)); 294 PetscCall(DMSetFromOptions(*sw)); 295 PetscCall(PetscMalloc4(dim, &xi0, dim, &v0, dim * dim, &J, dim * dim, &invJ)); 296 for (c = 0; c < dim; c++) xi0[c] = -1.; 297 PetscCall(DMSwarmGetField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 298 PetscCall(DMSwarmGetField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 299 PetscCall(DMSwarmGetField(*sw, "w_q", NULL, NULL, (void **)&vals)); 300 for (c = cStart; c < cEnd; ++c) { 301 for (q = 0; q < Nq; ++q) { 302 PetscCall(DMPlexComputeCellGeometryFEM(dm, c, NULL, v0, J, invJ, &detJ)); 303 swarm_cellid[c * Nq + q] = c; 304 CoordinatesRefToReal(dim, dim, xi0, v0, J, &qpoints[q * dim], &coords[(c * Nq + q) * dim]); 305 PetscCall(linear(dim, 0.0, &coords[(c * Nq + q) * dim], 1, &vals[c * Nq + q], (void *)user)); 306 vals[c * Nq + q] *= qweights[q] * detJ; 307 } 308 } 309 PetscCall(DMSwarmRestoreField(*sw, coordFields[0], NULL, NULL, (void **)&coords)); 310 PetscCall(DMSwarmRestoreField(*sw, cellid, NULL, NULL, (void **)&swarm_cellid)); 311 PetscCall(DMSwarmRestoreField(*sw, "w_q", NULL, NULL, (void **)&vals)); 312 PetscCall(PetscFree4(xi0, v0, J, invJ)); 313 PetscCall(DMSwarmMigrate(*sw, PETSC_FALSE)); 314 PetscCall(PetscObjectSetName((PetscObject)*sw, "Particles")); 315 PetscCall(DMSwarmVectorDefineField(*sw, "w_q")); 316 PetscCall(DMViewFromOptions(*sw, NULL, "-sw_view")); 317 PetscFunctionReturn(PETSC_SUCCESS); 318 } 319 320 static PetscErrorCode computeParticleMoments(DM sw, PetscReal moments[3], AppCtx *user) 321 { 322 DM dm; 323 const PetscReal *coords; 324 const PetscScalar *w; 325 PetscReal mom[3] = {0.0, 0.0, 0.0}; 326 PetscInt cell, cStart, cEnd, dim; 327 328 PetscFunctionBeginUser; 329 PetscCall(DMGetDimension(sw, &dim)); 330 PetscCall(DMSwarmGetCellDM(sw, &dm)); 331 PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 332 PetscCall(DMSwarmSortGetAccess(sw)); 333 PetscCall(DMSwarmGetField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 334 PetscCall(DMSwarmGetField(sw, "w_q", NULL, NULL, (void **)&w)); 335 for (cell = cStart; cell < cEnd; ++cell) { 336 PetscInt *pidx; 337 PetscInt Np, p, d; 338 339 PetscCall(DMSwarmSortGetPointsPerCell(sw, cell, &Np, &pidx)); 340 for (p = 0; p < Np; ++p) { 341 const PetscInt idx = pidx[p]; 342 const PetscReal *c = &coords[idx * dim]; 343 344 mom[0] += PetscRealPart(w[idx]); 345 mom[1] += PetscRealPart(w[idx]) * c[0]; 346 for (d = 0; d < dim; ++d) mom[2] += PetscRealPart(w[idx]) * c[d] * c[d]; 347 } 348 PetscCall(DMSwarmSortRestorePointsPerCell(sw, cell, &Np, &pidx)); 349 } 350 PetscCall(DMSwarmRestoreField(sw, DMSwarmPICField_coor, NULL, NULL, (void **)&coords)); 351 PetscCall(DMSwarmRestoreField(sw, "w_q", NULL, NULL, (void **)&w)); 352 PetscCall(DMSwarmSortRestoreAccess(sw)); 353 PetscCallMPI(MPIU_Allreduce(mom, moments, 3, MPIU_REAL, MPI_SUM, PetscObjectComm((PetscObject)sw))); 354 PetscFunctionReturn(PETSC_SUCCESS); 355 } 356 357 static void f0_1(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 358 { 359 f0[0] = u[0]; 360 } 361 362 static void f0_x(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 363 { 364 f0[0] = x[0] * u[0]; 365 } 366 367 static void f0_r2(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f0[]) 368 { 369 PetscInt d; 370 371 f0[0] = 0.0; 372 for (d = 0; d < dim; ++d) f0[0] += PetscSqr(x[d]) * u[0]; 373 } 374 375 static PetscErrorCode computeFEMMoments(DM dm, Vec u, PetscReal moments[3], AppCtx *user) 376 { 377 PetscDS prob; 378 PetscScalar mom; 379 380 PetscFunctionBeginUser; 381 PetscCall(DMGetDS(dm, &prob)); 382 PetscCall(PetscDSSetObjective(prob, 0, &f0_1)); 383 PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 384 moments[0] = PetscRealPart(mom); 385 PetscCall(PetscDSSetObjective(prob, 0, &f0_x)); 386 PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 387 moments[1] = PetscRealPart(mom); 388 PetscCall(PetscDSSetObjective(prob, 0, &f0_r2)); 389 PetscCall(DMPlexComputeIntegralFEM(dm, u, &mom, user)); 390 moments[2] = PetscRealPart(mom); 391 PetscFunctionReturn(PETSC_SUCCESS); 392 } 393 394 static PetscErrorCode TestL2ProjectionParticlesToField(DM dm, DM sw, Vec fhat, AppCtx *user) 395 { 396 const char *fieldnames[1] = {"w_q"}; 397 Vec fields[1] = {fhat}; 398 PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 399 PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 400 401 PetscFunctionBeginUser; 402 PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_FORWARD)); 403 404 /* Check moments of field */ 405 PetscCall(computeParticleMoments(sw, pmoments, user)); 406 PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 407 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 408 for (PetscInt m = 0; m < 3; ++m) { 409 PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 410 user->momentTol); 411 } 412 PetscFunctionReturn(PETSC_SUCCESS); 413 } 414 415 static PetscErrorCode TestL2ProjectionFieldToParticles(DM dm, DM sw, Vec fhat, AppCtx *user) 416 { 417 const char *fieldnames[1] = {"w_q"}; 418 Vec fields[1] = {fhat}; 419 PetscReal pmoments[3]; // \int f, \int x f, \int r^2 f 420 PetscReal fmoments[3]; // \int \hat f, \int x \hat f, \int r^2 \hat f 421 422 PetscFunctionBeginUser; 423 PetscCall(DMSwarmProjectFields(sw, dm, 1, fieldnames, fields, SCATTER_REVERSE)); 424 425 /* Check moments */ 426 PetscCall(computeParticleMoments(sw, pmoments, user)); 427 PetscCall(computeFEMMoments(dm, fhat, fmoments, user)); 428 PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 429 for (PetscInt m = 0; m < 3; ++m) { 430 PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), 431 user->momentTol); 432 } 433 PetscFunctionReturn(PETSC_SUCCESS); 434 } 435 436 /* Interpolate the gradient of an FEM (FVM) field. Code repurposed from DMPlexComputeGradientClementInterpolant */ 437 static PetscErrorCode InterpolateGradient(DM dm, Vec locX, Vec locC) 438 { 439 DM_Plex *mesh = (DM_Plex *)dm->data; 440 PetscInt debug = mesh->printFEM; 441 DM dmC; 442 PetscSection section; 443 PetscQuadrature quad = NULL; 444 PetscScalar *interpolant, *gradsum; 445 PetscFEGeom fegeom; 446 PetscReal *coords; 447 const PetscReal *quadPoints, *quadWeights; 448 PetscInt dim, coordDim, numFields, numComponents = 0, qNc, Nq, cStart, cEnd, vStart, vEnd, v, field, fieldOffset; 449 450 PetscFunctionBegin; 451 PetscCall(VecGetDM(locC, &dmC)); 452 PetscCall(VecSet(locC, 0.0)); 453 PetscCall(DMGetDimension(dm, &dim)); 454 PetscCall(DMGetCoordinateDim(dm, &coordDim)); 455 fegeom.dimEmbed = coordDim; 456 PetscCall(DMGetLocalSection(dm, §ion)); 457 PetscCall(PetscSectionGetNumFields(section, &numFields)); 458 for (field = 0; field < numFields; ++field) { 459 PetscObject obj; 460 PetscClassId id; 461 PetscInt Nc; 462 463 PetscCall(DMGetField(dm, field, NULL, &obj)); 464 PetscCall(PetscObjectGetClassId(obj, &id)); 465 if (id == PETSCFE_CLASSID) { 466 PetscFE fe = (PetscFE)obj; 467 468 PetscCall(PetscFEGetQuadrature(fe, &quad)); 469 PetscCall(PetscFEGetNumComponents(fe, &Nc)); 470 } else if (id == PETSCFV_CLASSID) { 471 PetscFV fv = (PetscFV)obj; 472 473 PetscCall(PetscFVGetQuadrature(fv, &quad)); 474 PetscCall(PetscFVGetNumComponents(fv, &Nc)); 475 } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 476 numComponents += Nc; 477 } 478 PetscCall(PetscQuadratureGetData(quad, NULL, &qNc, &Nq, &quadPoints, &quadWeights)); 479 PetscCheck(!(qNc != 1) || !(qNc != numComponents), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_SIZ, "Quadrature components %" PetscInt_FMT " != %" PetscInt_FMT " field components", qNc, numComponents); 480 PetscCall(PetscMalloc6(coordDim * numComponents * 2, &gradsum, coordDim * numComponents, &interpolant, coordDim * Nq, &coords, Nq, &fegeom.detJ, coordDim * coordDim * Nq, &fegeom.J, coordDim * coordDim * Nq, &fegeom.invJ)); 481 PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 482 PetscCall(DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd)); 483 for (v = vStart; v < vEnd; ++v) { 484 PetscInt *star = NULL; 485 PetscInt starSize, st, d, fc; 486 487 PetscCall(PetscArrayzero(gradsum, coordDim * numComponents)); 488 PetscCall(DMPlexGetTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 489 for (st = 0; st < starSize * 2; st += 2) { 490 const PetscInt cell = star[st]; 491 PetscScalar *grad = &gradsum[coordDim * numComponents]; 492 PetscScalar *x = NULL; 493 494 if ((cell < cStart) || (cell >= cEnd)) continue; 495 PetscCall(DMPlexComputeCellGeometryFEM(dm, cell, quad, coords, fegeom.J, fegeom.invJ, fegeom.detJ)); 496 PetscCall(DMPlexVecGetClosure(dm, NULL, locX, cell, NULL, &x)); 497 for (field = 0, fieldOffset = 0; field < numFields; ++field) { 498 PetscObject obj; 499 PetscClassId id; 500 PetscInt Nb, Nc, q, qc = 0; 501 502 PetscCall(PetscArrayzero(grad, coordDim * numComponents)); 503 PetscCall(DMGetField(dm, field, NULL, &obj)); 504 PetscCall(PetscObjectGetClassId(obj, &id)); 505 if (id == PETSCFE_CLASSID) { 506 PetscCall(PetscFEGetNumComponents((PetscFE)obj, &Nc)); 507 PetscCall(PetscFEGetDimension((PetscFE)obj, &Nb)); 508 } else if (id == PETSCFV_CLASSID) { 509 PetscCall(PetscFVGetNumComponents((PetscFV)obj, &Nc)); 510 Nb = 1; 511 } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 512 for (q = 0; q < Nq; ++q) { 513 PetscCheck(fegeom.detJ[q] > 0.0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Invalid determinant %g for element %" PetscInt_FMT ", quadrature points %" PetscInt_FMT, (double)fegeom.detJ[q], cell, q); 514 if (id == PETSCFE_CLASSID) PetscCall(PetscFEInterpolateGradient_Static((PetscFE)obj, 1, &x[fieldOffset], &fegeom, q, interpolant)); 515 else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Unknown discretization type for field %" PetscInt_FMT, field); 516 for (fc = 0; fc < Nc; ++fc) { 517 const PetscReal wt = quadWeights[q * qNc + qc + fc]; 518 519 for (d = 0; d < coordDim; ++d) grad[fc * coordDim + d] += interpolant[fc * dim + d] * wt * fegeom.detJ[q]; 520 } 521 } 522 fieldOffset += Nb; 523 } 524 PetscCall(DMPlexVecRestoreClosure(dm, NULL, locX, cell, NULL, &x)); 525 for (fc = 0; fc < numComponents; ++fc) { 526 for (d = 0; d < coordDim; ++d) gradsum[fc * coordDim + d] += grad[fc * coordDim + d]; 527 } 528 if (debug) { 529 PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " gradient: [", cell)); 530 for (fc = 0; fc < numComponents; ++fc) { 531 for (d = 0; d < coordDim; ++d) { 532 if (fc || d > 0) PetscCall(PetscPrintf(PETSC_COMM_SELF, ", ")); 533 PetscCall(PetscPrintf(PETSC_COMM_SELF, "%g", (double)PetscRealPart(grad[fc * coordDim + d]))); 534 } 535 } 536 PetscCall(PetscPrintf(PETSC_COMM_SELF, "]\n")); 537 } 538 } 539 PetscCall(DMPlexRestoreTransitiveClosure(dm, v, PETSC_FALSE, &starSize, &star)); 540 PetscCall(DMPlexVecSetClosure(dmC, NULL, locC, v, gradsum, INSERT_VALUES)); 541 } 542 PetscCall(PetscFree6(gradsum, interpolant, coords, fegeom.detJ, fegeom.J, fegeom.invJ)); 543 PetscFunctionReturn(PETSC_SUCCESS); 544 } 545 546 static PetscErrorCode TestFieldGradientProjection(DM dm, DM sw, AppCtx *user) 547 { 548 MPI_Comm comm; 549 KSP ksp; 550 Mat M; /* FEM mass matrix */ 551 Mat M_p; /* Particle mass matrix */ 552 Vec f, rhs, fhat, grad; /* Particle field f, \int phi_i f, FEM field */ 553 PetscReal pmoments[3]; /* \int f, \int x f, \int r^2 f */ 554 PetscReal fmoments[3]; /* \int \hat f, \int x \hat f, \int r^2 \hat f */ 555 PetscInt m; 556 557 PetscFunctionBeginUser; 558 PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 559 PetscCall(KSPCreate(comm, &ksp)); 560 PetscCall(KSPSetOptionsPrefix(ksp, "ptof_")); 561 PetscCall(DMGetGlobalVector(dm, &fhat)); 562 PetscCall(DMGetGlobalVector(dm, &rhs)); 563 PetscCall(DMGetGlobalVector(dm, &grad)); 564 565 PetscCall(DMCreateMassMatrix(sw, dm, &M_p)); 566 PetscCall(MatViewFromOptions(M_p, NULL, "-M_p_view")); 567 568 /* make particle weight vector */ 569 PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &f)); 570 571 /* create matrix RHS vector */ 572 PetscCall(MatMultTranspose(M_p, f, rhs)); 573 PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &f)); 574 PetscCall(PetscObjectSetName((PetscObject)rhs, "rhs")); 575 PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 576 577 PetscCall(DMCreateMatrix(dm, &M)); 578 PetscCall(DMPlexSNESComputeJacobianFEM(dm, fhat, M, M, user)); 579 580 PetscCall(InterpolateGradient(dm, fhat, grad)); 581 582 PetscCall(MatViewFromOptions(M, NULL, "-M_view")); 583 PetscCall(KSPSetOperators(ksp, M, M)); 584 PetscCall(KSPSetFromOptions(ksp)); 585 PetscCall(KSPSolve(ksp, rhs, grad)); 586 PetscCall(PetscObjectSetName((PetscObject)fhat, "fhat")); 587 PetscCall(VecViewFromOptions(fhat, NULL, "-fhat_view")); 588 589 /* Check moments of field */ 590 PetscCall(computeParticleMoments(sw, pmoments, user)); 591 PetscCall(computeFEMMoments(dm, grad, fmoments, user)); 592 PetscCall(PetscPrintf(comm, "L2 projection mass: %20.10e, x-momentum: %20.10e, energy: %20.10e.\n", fmoments[0], fmoments[1], fmoments[2])); 593 for (m = 0; m < 3; ++m) { 594 PetscCheck(PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]) <= user->momentTol, comm, PETSC_ERR_ARG_WRONG, "Moment %" PetscInt_FMT " error too large %g > %g", m, PetscAbsReal((fmoments[m] - pmoments[m]) / fmoments[m]), user->momentTol); 595 } 596 597 PetscCall(KSPDestroy(&ksp)); 598 PetscCall(MatDestroy(&M)); 599 PetscCall(MatDestroy(&M_p)); 600 PetscCall(DMRestoreGlobalVector(dm, &fhat)); 601 PetscCall(DMRestoreGlobalVector(dm, &rhs)); 602 PetscCall(DMRestoreGlobalVector(dm, &grad)); 603 PetscFunctionReturn(PETSC_SUCCESS); 604 } 605 606 static PetscErrorCode TestL2Projection_Shape(DM dm, DM sw, AppCtx *user) 607 { 608 PetscErrorCode (*funcs[1])(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *); 609 KSP ksp; 610 Mat mass; 611 Vec u, rhs, uproj; 612 void *ctxs[1]; 613 PetscReal error; 614 615 PetscFunctionBeginUser; 616 ctxs[0] = (void *)user; 617 funcs[0] = linear; 618 619 PetscCall(DMSwarmCreateGlobalVectorFromField(sw, "w_q", &u)); 620 PetscCall(VecViewFromOptions(u, NULL, "-f_view")); 621 PetscCall(DMGetGlobalVector(dm, &rhs)); 622 PetscCall(DMCreateMassMatrix(sw, dm, &mass)); 623 PetscCall(MatMultTranspose(mass, u, rhs)); 624 PetscCall(VecViewFromOptions(rhs, NULL, "-rhs_view")); 625 PetscCall(MatDestroy(&mass)); 626 PetscCall(DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &u)); 627 PetscCall(DMGetGlobalVector(dm, &uproj)); 628 PetscCall(DMCreateMatrix(dm, &mass)); 629 PetscCall(DMPlexSNESComputeJacobianFEM(dm, uproj, mass, mass, user)); 630 PetscCall(MatViewFromOptions(mass, NULL, "-mass_mat_view")); 631 PetscCall(KSPCreate(PETSC_COMM_WORLD, &ksp)); 632 PetscCall(KSPSetOperators(ksp, mass, mass)); 633 PetscCall(KSPSetFromOptions(ksp)); 634 PetscCall(KSPSolve(ksp, rhs, uproj)); 635 PetscCall(KSPDestroy(&ksp)); 636 PetscCall(PetscObjectSetName((PetscObject)uproj, "Full Projection")); 637 PetscCall(VecViewFromOptions(uproj, NULL, "-proj_vec_view")); 638 PetscCall(DMComputeL2Diff(dm, 0.0, funcs, ctxs, uproj, &error)); 639 PetscCall(PetscPrintf(PETSC_COMM_WORLD, "Projected L2 Error: %g\n", (double)error)); 640 PetscCall(MatDestroy(&mass)); 641 PetscCall(DMRestoreGlobalVector(dm, &rhs)); 642 PetscCall(DMRestoreGlobalVector(dm, &uproj)); 643 PetscFunctionReturn(PETSC_SUCCESS); 644 } 645 646 int main(int argc, char *argv[]) 647 { 648 MPI_Comm comm; 649 DM dm, sw; 650 AppCtx user; 651 652 PetscFunctionBeginUser; 653 PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 654 comm = PETSC_COMM_WORLD; 655 PetscCall(ProcessOptions(comm, &user)); 656 PetscCall(CreateMesh(comm, &dm, &user)); 657 PetscCall(CreateFEM(dm, &user)); 658 if (!user.shape) { 659 Vec fhat; 660 661 PetscCall(CreateParticles(dm, &sw, &user)); 662 PetscCall(DMGetGlobalVector(dm, &fhat)); 663 PetscCall(TestL2ProjectionParticlesToField(dm, sw, fhat, &user)); 664 PetscCall(TestL2ProjectionFieldToParticles(dm, sw, fhat, &user)); 665 PetscCall(TestFieldGradientProjection(dm, sw, &user)); 666 PetscCall(DMRestoreGlobalVector(dm, &fhat)); 667 } else { 668 PetscCall(CreateParticles_Shape(dm, &sw, &user)); 669 PetscCall(TestL2Projection_Shape(dm, sw, &user)); 670 } 671 PetscCall(DMDestroy(&dm)); 672 PetscCall(DMDestroy(&sw)); 673 PetscCall(PetscFinalize()); 674 return 0; 675 } 676 677 /*TEST 678 679 # Swarm does not handle complex or quad 680 build: 681 requires: !complex double 682 683 test: 684 suffix: proj_tri_0 685 requires: triangle 686 args: -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 687 filter: grep -v marker | grep -v atomic | grep -v usage 688 689 test: 690 suffix: proj_tri_2_faces 691 requires: triangle 692 args: -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 693 filter: grep -v marker | grep -v atomic | grep -v usage 694 695 test: 696 suffix: proj_quad_0 697 requires: triangle 698 args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 699 filter: grep -v marker | grep -v atomic | grep -v usage 700 701 test: 702 suffix: proj_quad_2_faces 703 requires: triangle 704 args: -dm_plex_simplex 0 -dm_plex_box_faces 2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 705 filter: grep -v marker | grep -v atomic | grep -v usage 706 707 test: 708 suffix: proj_tri_5P 709 requires: triangle 710 args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 711 filter: grep -v marker | grep -v atomic | grep -v usage 712 713 test: 714 suffix: proj_quad_5P 715 requires: triangle 716 args: -dm_plex_simplex 0 -dm_plex_box_faces 1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 717 filter: grep -v marker | grep -v atomic | grep -v usage 718 719 test: 720 suffix: proj_tri_mdx 721 requires: triangle 722 args: -dm_plex_box_faces 1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 723 filter: grep -v marker | grep -v atomic | grep -v usage 724 725 test: 726 suffix: proj_tri_mdx_5P 727 requires: triangle 728 args: -dm_plex_box_faces 1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 729 filter: grep -v marker | grep -v atomic | grep -v usage 730 731 test: 732 suffix: proj_tri_3d 733 requires: ctetgen 734 args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 735 filter: grep -v marker | grep -v atomic | grep -v usage 736 737 test: 738 suffix: proj_tri_3d_2_faces 739 requires: ctetgen 740 args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 741 filter: grep -v marker | grep -v atomic | grep -v usage 742 743 test: 744 suffix: proj_tri_3d_5P 745 requires: ctetgen 746 args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 747 filter: grep -v marker | grep -v atomic | grep -v usage 748 749 test: 750 suffix: proj_tri_3d_mdx 751 requires: ctetgen 752 args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 753 filter: grep -v marker | grep -v atomic | grep -v usage 754 755 test: 756 suffix: proj_tri_3d_mdx_5P 757 requires: ctetgen 758 args: -dm_plex_dim 3 -dm_plex_box_faces 1,1,1 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 759 filter: grep -v marker | grep -v atomic | grep -v usage 760 761 test: 762 suffix: proj_tri_3d_mdx_2_faces 763 requires: ctetgen 764 args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 765 filter: grep -v marker | grep -v atomic | grep -v usage 766 767 test: 768 suffix: proj_tri_3d_mdx_5P_2_faces 769 requires: ctetgen 770 args: -dm_plex_dim 3 -dm_plex_box_faces 2,2,2 -particlesPerCell 5 -mesh_perturbation 1.0e-1 -dm_view -sw_view -petscspace_degree 2 -petscfe_default_quadrature_order {{2 3}} -ptof_pc_type lu -ftop_ksp_rtol 1e-15 -ftop_ksp_type lsqr -ftop_pc_type none 771 filter: grep -v marker | grep -v atomic | grep -v usage 772 773 test: 774 suffix: proj_quad_lsqr_scale 775 requires: !complex 776 args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 777 -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 778 -particlesPerCell 200 \ 779 -ptof_pc_type lu \ 780 -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type none 781 782 test: 783 suffix: proj_quad_lsqr_prec_scale 784 requires: !complex 785 args: -dm_plex_simplex 0 -dm_plex_box_faces 4,4 \ 786 -petscspace_degree 2 -petscfe_default_quadrature_order 3 \ 787 -particlesPerCell 200 \ 788 -ptof_pc_type lu \ 789 -ftop_ksp_rtol 1e-17 -ftop_ksp_type lsqr -ftop_pc_type bjacobi -ftop_sub_pc_type lu -ftop_sub_pc_factor_shift_type nonzero 790 test: 791 suffix: proj_shape_linear_tri_2d 792 requires: ctetgen triangle 793 args: -shape -dm_plex_box_faces 2,2\ 794 -dm_view -sw_view\ 795 -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 796 -pc_type lu 797 test: 798 suffix: proj_shape_linear_quad_2d 799 requires: ctetgen triangle 800 args: -shape -dm_plex_simplex 0 -dm_plex_box_faces 2,2\ 801 -dm_view -sw_view\ 802 -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 803 -pc_type lu 804 test: 805 suffix: proj_shape_linear_tri_3d 806 requires: ctetgen triangle 807 args: -shape -dm_plex_dim 3 -dm_plex_box_faces 2,2,2\ 808 -dm_view -sw_view\ 809 -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 810 -pc_type lu 811 test: 812 suffix: proj_shape_linear_quad_3d 813 requires: ctetgen triangle 814 args: -shape -dm_plex_dim 3 -dm_plex_simplex 0\ 815 -dm_plex_box_faces 2,2,2\ 816 -dm_view -sw_view\ 817 -petscspace_degree 1 -petscfe_default_quadrature_order 1\ 818 -pc_type lu 819 TEST*/ 820