xref: /petsc/src/dm/impls/swarm/tests/ex7.c (revision 2c71b3e237ead271e4f3aa1505f92bf476e3413d)
13c611800SMark Adams static char help[] = "Example program demonstrating projection between particle and finite element spaces using OpenMP in 2D cylindrical coordinates\n";
23c611800SMark Adams 
33c611800SMark Adams #include "petscdmplex.h"
43c611800SMark Adams #include "petscds.h"
53c611800SMark Adams #include "petscdmswarm.h"
63c611800SMark Adams #include "petscksp.h"
73c611800SMark Adams #include <petsc/private/petscimpl.h>
83c611800SMark Adams #if defined(PETSC_HAVE_OPENMP) && defined(PETSC_HAVE_THREADSAFETY)
93c611800SMark Adams #include <omp.h>
103c611800SMark Adams #endif
113c611800SMark Adams 
123c611800SMark Adams typedef struct {
133c611800SMark Adams   Mat MpTrans;
143c611800SMark Adams   Mat Mp;
153c611800SMark Adams   Vec ff;
163c611800SMark Adams   Vec uu;
173c611800SMark Adams } MatShellCtx;
183c611800SMark Adams 
193c611800SMark Adams PetscErrorCode MatMultMtM_SeqAIJ(Mat MtM,Vec xx,Vec yy)
203c611800SMark Adams {
213c611800SMark Adams   MatShellCtx    *matshellctx;
223c611800SMark Adams   PetscErrorCode ierr;
233c611800SMark Adams 
243c611800SMark Adams   PetscFunctionBeginUser;
253c611800SMark Adams   ierr = MatShellGetContext(MtM,&matshellctx);CHKERRQ(ierr);
26*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!matshellctx,PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "No context");
273c611800SMark Adams   ierr = MatMult(matshellctx->Mp, xx, matshellctx->ff);CHKERRQ(ierr);
283c611800SMark Adams   ierr = MatMult(matshellctx->MpTrans, matshellctx->ff, yy);CHKERRQ(ierr);
293c611800SMark Adams   PetscFunctionReturn(0);
303c611800SMark Adams }
313c611800SMark Adams 
323c611800SMark Adams PetscErrorCode MatMultAddMtM_SeqAIJ(Mat MtM,Vec xx, Vec yy, Vec zz)
333c611800SMark Adams {
343c611800SMark Adams   MatShellCtx    *matshellctx;
353c611800SMark Adams   PetscErrorCode ierr;
363c611800SMark Adams 
373c611800SMark Adams   PetscFunctionBeginUser;
383c611800SMark Adams   ierr = MatShellGetContext(MtM,&matshellctx);CHKERRQ(ierr);
39*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!matshellctx,PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "No context");
403c611800SMark Adams   ierr = MatMult(matshellctx->Mp, xx, matshellctx->ff);CHKERRQ(ierr);
413c611800SMark Adams   ierr = MatMultAdd(matshellctx->MpTrans, matshellctx->ff, yy, zz);CHKERRQ(ierr);
423c611800SMark Adams   PetscFunctionReturn(0);
433c611800SMark Adams }
443c611800SMark Adams 
453c611800SMark Adams PetscErrorCode createSwarm(const DM dm, DM *sw)
463c611800SMark Adams {
473c611800SMark Adams   PetscErrorCode ierr;
483c611800SMark Adams   PetscInt       Nc = 1, dim = 2;
493c611800SMark Adams 
503c611800SMark Adams   PetscFunctionBeginUser;
513c611800SMark Adams   ierr = DMCreate(PETSC_COMM_SELF, sw);CHKERRQ(ierr);
523c611800SMark Adams   ierr = DMSetType(*sw, DMSWARM);CHKERRQ(ierr);
533c611800SMark Adams   ierr = DMSetDimension(*sw, dim);CHKERRQ(ierr);
543c611800SMark Adams   ierr = DMSwarmSetType(*sw, DMSWARM_PIC);CHKERRQ(ierr);
553c611800SMark Adams   ierr = DMSwarmSetCellDM(*sw, dm);CHKERRQ(ierr);
563c611800SMark Adams   ierr = DMSwarmRegisterPetscDatatypeField(*sw, "w_q", Nc, PETSC_SCALAR);CHKERRQ(ierr);
573c611800SMark Adams   ierr = DMSwarmFinalizeFieldRegister(*sw);CHKERRQ(ierr);
583c611800SMark Adams   ierr = DMSetFromOptions(*sw);CHKERRQ(ierr);
593c611800SMark Adams   PetscFunctionReturn(0);
603c611800SMark Adams }
613c611800SMark Adams 
623c611800SMark Adams PetscErrorCode gridToParticles(const DM dm, DM sw, PetscReal *moments, Vec rhs, Mat M_p)
633c611800SMark Adams {
643c611800SMark Adams   PetscBool      is_lsqr;
653c611800SMark Adams   KSP            ksp;
663c611800SMark Adams   Mat            PM_p=NULL,MtM,D;
673c611800SMark Adams   Vec            ff;
683c611800SMark Adams   PetscErrorCode ierr;
693c611800SMark Adams   PetscInt       Np, timestep = 0, bs, N, M, nzl;
703c611800SMark Adams   PetscReal      time = 0.0;
713c611800SMark Adams   PetscDataType  dtype;
723c611800SMark Adams   MatShellCtx    *matshellctx;
733c611800SMark Adams 
743c611800SMark Adams   PetscFunctionBeginUser;
753c611800SMark Adams   ierr = KSPCreate(PETSC_COMM_SELF, &ksp);CHKERRQ(ierr);
763c611800SMark Adams   ierr = KSPSetOptionsPrefix(ksp, "ftop_");CHKERRQ(ierr);
773c611800SMark Adams   ierr = KSPSetFromOptions(ksp);CHKERRQ(ierr);
783c611800SMark Adams   ierr = PetscObjectTypeCompare((PetscObject)ksp,KSPLSQR,&is_lsqr);
793c611800SMark Adams   if (!is_lsqr) {
803c611800SMark Adams     ierr = MatGetLocalSize(M_p, &M, &N);CHKERRQ(ierr);
813c611800SMark Adams     if (N>M) {
823c611800SMark Adams       PC        pc;
837d3de750SJacob Faibussowitsch       ierr = PetscInfo(ksp, " M (%D) < M (%D) -- skip revert to lsqr\n",M,N);CHKERRQ(ierr);
843c611800SMark Adams       is_lsqr = PETSC_TRUE;
853c611800SMark Adams       ierr = KSPSetType(ksp,KSPLSQR);CHKERRQ(ierr);
863c611800SMark Adams       ierr = KSPGetPC(ksp,&pc);CHKERRQ(ierr);
873c611800SMark Adams       ierr = PCSetType(pc,PCNONE);CHKERRQ(ierr); // could put in better solver -ftop_pc_type bjacobi -ftop_sub_pc_type lu -ftop_sub_pc_factor_shift_type nonzero
883c611800SMark Adams     } else {
893c611800SMark Adams       ierr = PetscNew(&matshellctx);CHKERRQ(ierr);
903c611800SMark Adams       ierr = MatCreateShell(PetscObjectComm((PetscObject)dm),N,N,PETSC_DECIDE,PETSC_DECIDE,matshellctx,&MtM);CHKERRQ(ierr);
913c611800SMark Adams       ierr = MatTranspose(M_p,MAT_INITIAL_MATRIX,&matshellctx->MpTrans);CHKERRQ(ierr);
923c611800SMark Adams       matshellctx->Mp = M_p;
933c611800SMark Adams       ierr = MatShellSetOperation(MtM, MATOP_MULT, (void (*)(void))MatMultMtM_SeqAIJ);CHKERRQ(ierr);
943c611800SMark Adams       ierr = MatShellSetOperation(MtM, MATOP_MULT_ADD, (void (*)(void))MatMultAddMtM_SeqAIJ);CHKERRQ(ierr);
953c611800SMark Adams       ierr = MatCreateVecs(M_p,&matshellctx->uu,&matshellctx->ff);CHKERRQ(ierr);
963c611800SMark Adams       ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,N,N,1,NULL,&D);CHKERRQ(ierr);
973c611800SMark Adams       for (int i=0 ; i<N ; i++) {
983c611800SMark Adams         const PetscScalar *vals;
993c611800SMark Adams         const PetscInt    *cols;
1003c611800SMark Adams         PetscScalar dot = 0;
1013c611800SMark Adams         ierr = MatGetRow(matshellctx->MpTrans,i,&nzl,&cols,&vals);CHKERRQ(ierr);
1023c611800SMark Adams         for (int ii=0 ; ii<nzl ; ii++) dot += PetscSqr(vals[ii]);
103*2c71b3e2SJacob Faibussowitsch         PetscCheckFalse(dot==0.0,PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Row %D is empty", i);
1043c611800SMark Adams         ierr = MatSetValue(D,i,i,dot,INSERT_VALUES);
1053c611800SMark Adams       }
1063c611800SMark Adams       ierr = MatAssemblyBegin(D, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1073c611800SMark Adams       ierr = MatAssemblyEnd(D, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1087d3de750SJacob Faibussowitsch       PetscInfo(M_p,"createMtMKSP Have %D eqs, nzl = %D\n",N,nzl);
1093c611800SMark Adams       ierr = KSPSetOperators(ksp, MtM, D);CHKERRQ(ierr);
1103c611800SMark Adams       ierr = MatViewFromOptions(D,NULL,"-ftop2_D_mat_view");CHKERRQ(ierr);
1113c611800SMark Adams       ierr = MatViewFromOptions(M_p,NULL,"-ftop2_Mp_mat_view");CHKERRQ(ierr);
1123c611800SMark Adams       ierr = MatViewFromOptions(matshellctx->MpTrans,NULL,"-ftop2_MpTranspose_mat_view");CHKERRQ(ierr);
1133c611800SMark Adams     }
1143c611800SMark Adams   }
1153c611800SMark Adams   if (is_lsqr) {
1163c611800SMark Adams     PC        pc;
1173c611800SMark Adams     PetscBool is_bjac;
1183c611800SMark Adams     ierr = KSPGetPC(ksp,&pc);CHKERRQ(ierr);
1193c611800SMark Adams     ierr = PetscObjectTypeCompare((PetscObject)pc,PCBJACOBI,&is_bjac);
1203c611800SMark Adams     if (is_bjac) {
1213c611800SMark Adams       ierr = DMSwarmCreateMassMatrixSquare(sw, dm, &PM_p);CHKERRQ(ierr);
1223c611800SMark Adams       ierr = KSPSetOperators(ksp, M_p, PM_p);CHKERRQ(ierr);
1233c611800SMark Adams     } else {
1243c611800SMark Adams       ierr = KSPSetOperators(ksp, M_p, M_p);CHKERRQ(ierr);
1253c611800SMark Adams     }
1263c611800SMark Adams   }
1273c611800SMark Adams   ierr = DMSwarmCreateGlobalVectorFromField(sw, "w_q", &ff);CHKERRQ(ierr); // this grabs access !!!!!
1283c611800SMark Adams   if (!is_lsqr) {
1293c611800SMark Adams     ierr = KSPSolve(ksp, rhs, matshellctx->uu);CHKERRQ(ierr);
1303c611800SMark Adams     ierr = MatMult(M_p, matshellctx->uu, ff);CHKERRQ(ierr);
1313c611800SMark Adams     ierr = MatDestroy(&matshellctx->MpTrans);CHKERRQ(ierr);
1323c611800SMark Adams     ierr = VecDestroy(&matshellctx->ff);CHKERRQ(ierr);
1333c611800SMark Adams     ierr = VecDestroy(&matshellctx->uu);CHKERRQ(ierr);
1343c611800SMark Adams     ierr = MatDestroy(&D);CHKERRQ(ierr);
1353c611800SMark Adams     ierr = MatDestroy(&MtM);CHKERRQ(ierr);
1363c611800SMark Adams     ierr = PetscFree(matshellctx);CHKERRQ(ierr);
1373c611800SMark Adams   } else {
1383c611800SMark Adams     ierr = KSPSolveTranspose(ksp, rhs, ff);CHKERRQ(ierr);
1393c611800SMark Adams   }
1403c611800SMark Adams   ierr = KSPDestroy(&ksp);CHKERRQ(ierr);
1413c611800SMark Adams   /* Visualize particle field */
1423c611800SMark Adams   ierr = DMSetOutputSequenceNumber(sw, timestep, time);CHKERRQ(ierr);
1433c611800SMark Adams   ierr = VecViewFromOptions(ff, NULL, "-weights_view");CHKERRQ(ierr);
1443c611800SMark Adams   ierr = DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &ff);CHKERRQ(ierr);
1453c611800SMark Adams 
1463c611800SMark Adams   /* compute energy */
1473c611800SMark Adams   if (moments) {
1483c611800SMark Adams     PetscReal *wq, *coords;
1493c611800SMark Adams     ierr = DMSwarmGetLocalSize(sw,&Np);CHKERRQ(ierr);
1503c611800SMark Adams     ierr = DMSwarmGetField(sw, "w_q", &bs, &dtype, (void**)&wq);CHKERRQ(ierr);
1513c611800SMark Adams     ierr = DMSwarmGetField(sw, "DMSwarmPIC_coor", &bs, &dtype, (void**)&coords);CHKERRQ(ierr);
1523c611800SMark Adams     moments[0] = moments[1] = moments[2] = 0;
1533c611800SMark Adams     for (int p=0;p<Np;p++) {
1543c611800SMark Adams       moments[0] += wq[p];
1553c611800SMark Adams       moments[1] += wq[p] * coords[p*2+0]; // x-momentum
1563c611800SMark Adams       moments[2] += wq[p] * (PetscSqr(coords[p*2+0])+PetscSqr(coords[p*2+1]));
1573c611800SMark Adams     }
1583c611800SMark Adams     ierr = DMSwarmRestoreField(sw, "DMSwarmPIC_coor", &bs, &dtype, (void**)&coords);CHKERRQ(ierr);
1593c611800SMark Adams     ierr = DMSwarmRestoreField(sw, "w_q", &bs, &dtype, (void**)&wq);CHKERRQ(ierr);
1603c611800SMark Adams   }
1613c611800SMark Adams   ierr = MatDestroy(&PM_p);
1623c611800SMark Adams 
1633c611800SMark Adams   PetscFunctionReturn(0);
1643c611800SMark Adams }
1653c611800SMark Adams 
1663c611800SMark Adams PetscErrorCode particlesToGrid(const DM dm, DM sw, const PetscInt Np, const PetscInt a_tid, const PetscInt dim, const PetscInt target,
1673c611800SMark Adams                                const PetscReal xx[], const PetscReal yy[], const PetscReal a_wp[], Vec rho, Mat *Mp_out)
1683c611800SMark Adams {
1693c611800SMark Adams 
1703c611800SMark Adams   PetscBool      removePoints = PETSC_TRUE;
1713c611800SMark Adams   PetscReal      *wq, *coords;
1723c611800SMark Adams   PetscDataType  dtype;
1733c611800SMark Adams   Mat            M_p;
1743c611800SMark Adams   Vec            ff;
1753c611800SMark Adams   PetscErrorCode ierr;
1763c611800SMark Adams   PetscInt       bs,p,zero=0;
1773c611800SMark Adams 
1783c611800SMark Adams   PetscFunctionBeginUser;
1793c611800SMark Adams   ierr = DMSwarmSetLocalSizes(sw, Np, zero);CHKERRQ(ierr);
1803c611800SMark Adams   ierr = DMSwarmGetField(sw, "w_q", &bs, &dtype, (void**)&wq);CHKERRQ(ierr);
1813c611800SMark Adams   ierr = DMSwarmGetField(sw, "DMSwarmPIC_coor", &bs, &dtype, (void**)&coords);CHKERRQ(ierr);
1823c611800SMark Adams   for (p=0;p<Np;p++) {
1833c611800SMark Adams     coords[p*2+0]  = xx[p];
1843c611800SMark Adams     coords[p*2+1]  = yy[p];
1853c611800SMark Adams     wq[p]          = a_wp[p];
1863c611800SMark Adams   }
1873c611800SMark Adams   ierr = DMSwarmRestoreField(sw, "DMSwarmPIC_coor", &bs, &dtype, (void**)&coords);CHKERRQ(ierr);
1883c611800SMark Adams   ierr = DMSwarmRestoreField(sw, "w_q", &bs, &dtype, (void**)&wq);CHKERRQ(ierr);
1893c611800SMark Adams   ierr = DMSwarmMigrate(sw, removePoints);CHKERRQ(ierr);
1903c611800SMark Adams   ierr = PetscObjectSetName((PetscObject)sw, "Particle Grid");CHKERRQ(ierr);
1913c611800SMark Adams   if (a_tid==target) {ierr = DMViewFromOptions(sw, NULL, "-swarm_view");CHKERRQ(ierr);}
1923c611800SMark Adams 
1933c611800SMark Adams   /* Project particles to field */
1943c611800SMark Adams   /* This gives M f = \int_\Omega \phi f, which looks like a rhs for a PDE */
1953c611800SMark Adams   ierr = DMCreateMassMatrix(sw, dm, &M_p);CHKERRQ(ierr);
1963c611800SMark Adams   ierr = PetscObjectSetName((PetscObject)rho, "rho");CHKERRQ(ierr);
1973c611800SMark Adams 
1983c611800SMark Adams   ierr = DMSwarmCreateGlobalVectorFromField(sw, "w_q", &ff);CHKERRQ(ierr); // this grabs access !!!!!
1993c611800SMark Adams   ierr = PetscObjectSetName((PetscObject)ff, "weights");CHKERRQ(ierr);
2003c611800SMark Adams   ierr = MatMultTranspose(M_p, ff, rho);CHKERRQ(ierr);
2013c611800SMark Adams   ierr = DMSwarmDestroyGlobalVectorFromField(sw, "w_q", &ff);CHKERRQ(ierr);
2023c611800SMark Adams 
2033c611800SMark Adams   /* Visualize mesh field */
2043c611800SMark Adams   if (a_tid==target) {ierr = VecViewFromOptions(rho, NULL, "-rho_view");CHKERRQ(ierr);}
2053c611800SMark Adams   // output
2063c611800SMark Adams   *Mp_out = M_p;
2073c611800SMark Adams 
2083c611800SMark Adams   PetscFunctionReturn(0);
2093c611800SMark Adams }
2103c611800SMark Adams static PetscErrorCode maxwellian(PetscInt dim, const PetscReal x[], PetscReal kt_m, PetscReal n, PetscScalar *u)
2113c611800SMark Adams {
2123c611800SMark Adams   PetscInt      i;
2133c611800SMark Adams   PetscReal     v2 = 0, theta = 2*kt_m; /* theta = 2kT/mc^2 */
2143c611800SMark Adams 
2153c611800SMark Adams   PetscFunctionBegin;
2163c611800SMark Adams   /* compute the exponents, v^2 */
2173c611800SMark Adams   for (i = 0; i < dim; ++i) v2 += x[i]*x[i];
2183c611800SMark Adams   /* evaluate the Maxwellian */
2193c611800SMark Adams   u[0] = n*PetscPowReal(PETSC_PI*theta,-1.5)*(PetscExpReal(-v2/theta)) * 2.*PETSC_PI*x[1]; // radial term for 2D axi-sym.
2203c611800SMark Adams   PetscFunctionReturn(0);
2213c611800SMark Adams }
2223c611800SMark Adams #define NUM_SOLVE_LOOPS 100
2233c611800SMark Adams #define MAX_NUM_THRDS 12
2243c611800SMark Adams PetscErrorCode go()
2253c611800SMark Adams {
2263c611800SMark Adams   DM              dm_t[MAX_NUM_THRDS], sw_t[MAX_NUM_THRDS];
2273c611800SMark Adams   PetscFE         fe;
2283c611800SMark Adams   PetscInt        dim = 2, Nc = 1, timestep = 0, i, faces[3];
2293c611800SMark Adams   PetscInt        Np[2] = {10,10}, Np2[2], field = 0, target = 0, Np_t[MAX_NUM_THRDS];
2303c611800SMark Adams   PetscReal       time = 0.0, moments_0[3], moments_1[3], vol;
2313c611800SMark Adams   PetscReal       lo[3] = {-5,0,-5}, hi[3] = {5,5,5}, h[3], hp[3], *xx_t[MAX_NUM_THRDS], *yy_t[MAX_NUM_THRDS], *wp_t[MAX_NUM_THRDS], solve_time = 0;
2323c611800SMark Adams   Vec             rho_t[MAX_NUM_THRDS], rhs_t[MAX_NUM_THRDS];
2333c611800SMark Adams   Mat             M_p_t[MAX_NUM_THRDS];
2343c611800SMark Adams   PetscErrorCode  ierr;
2353c611800SMark Adams #if defined PETSC_USE_LOG
2363c611800SMark Adams   PetscLogStage   stage;
2373c611800SMark Adams   PetscLogEvent   swarm_create_ev, solve_ev, solve_loop_ev;
2383c611800SMark Adams #endif
2393c611800SMark Adams #if defined(PETSC_HAVE_OPENMP) && defined(PETSC_HAVE_THREADSAFETY)
2403c611800SMark Adams   PetscInt        numthreads = PetscNumOMPThreads;
2413c611800SMark Adams   double          starttime, endtime;
2423c611800SMark Adams #else
2433c611800SMark Adams   PetscInt        numthreads = 1;
2443c611800SMark Adams #endif
2453c611800SMark Adams 
2463c611800SMark Adams   PetscFunctionBeginUser;
2473c611800SMark Adams #if defined(PETSC_HAVE_OPENMP) && defined(PETSC_HAVE_THREADSAFETY)
248*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(numthreads>MAX_NUM_THRDS,PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Too many threads %D > %D", numthreads, MAX_NUM_THRDS);
249*2c71b3e2SJacob Faibussowitsch   PetscCheckFalse(numthreads<=0,PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "No threads %D > %D ", numthreads,  MAX_NUM_THRDS);
2503c611800SMark Adams #endif
2513c611800SMark Adams   if (target >= numthreads) target = numthreads-1;
2523c611800SMark Adams   ierr = PetscLogEventRegister("Create Swarm", DM_CLASSID, &swarm_create_ev);CHKERRQ(ierr);
2533c611800SMark Adams   ierr = PetscLogEventRegister("Single solve", DM_CLASSID, &solve_ev);CHKERRQ(ierr);
2543c611800SMark Adams   ierr = PetscLogEventRegister("Solve loop", DM_CLASSID, &solve_loop_ev);CHKERRQ(ierr);
2553c611800SMark Adams   ierr = PetscLogStageRegister("Solve", &stage);CHKERRQ(ierr);
2563c611800SMark Adams   i    = dim;
2573c611800SMark Adams   ierr = PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, &i, NULL);CHKERRQ(ierr);
2583c611800SMark Adams   i    = dim;
2593c611800SMark Adams   ierr = PetscOptionsGetIntArray(NULL, NULL, "-np", Np,  &i, NULL);CHKERRQ(ierr);
2603c611800SMark Adams   /* Create thread meshes */
2613c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
2623c611800SMark Adams     // setup mesh dm_t, could use PETSc's Landau create velocity space mesh here to get dm_t[tid]
2633c611800SMark Adams     ierr = DMCreate(PETSC_COMM_SELF, &dm_t[tid]);CHKERRQ(ierr);
2643c611800SMark Adams     ierr = DMSetType(dm_t[tid], DMPLEX);CHKERRQ(ierr);
2653c611800SMark Adams     ierr = DMSetFromOptions(dm_t[tid]);CHKERRQ(ierr);
2663c611800SMark Adams     ierr = PetscFECreateDefault(PETSC_COMM_SELF, dim, Nc, PETSC_FALSE, "", PETSC_DECIDE, &fe);CHKERRQ(ierr);
2673c611800SMark Adams     ierr = PetscFESetFromOptions(fe);CHKERRQ(ierr);
2683c611800SMark Adams     ierr = PetscObjectSetName((PetscObject)fe, "fe");CHKERRQ(ierr);
2693c611800SMark Adams     ierr = DMSetField(dm_t[tid], field, NULL, (PetscObject)fe);CHKERRQ(ierr);
2703c611800SMark Adams     ierr = DMCreateDS(dm_t[tid]);CHKERRQ(ierr);
2713c611800SMark Adams     ierr = PetscFEDestroy(&fe);CHKERRQ(ierr);
2723c611800SMark Adams     // helper vectors
2733c611800SMark Adams     ierr = DMSetOutputSequenceNumber(dm_t[tid], timestep, time);CHKERRQ(ierr); // not used
2743c611800SMark Adams     ierr = DMCreateGlobalVector(dm_t[tid], &rho_t[tid]);CHKERRQ(ierr);
2753c611800SMark Adams     ierr = DMCreateGlobalVector(dm_t[tid], &rhs_t[tid]);CHKERRQ(ierr);
2763c611800SMark Adams     // this mimics application code
2773c611800SMark Adams     ierr = DMGetBoundingBox(dm_t[tid], lo, hi);CHKERRQ(ierr);
2783c611800SMark Adams     if (tid==target) {
2793c611800SMark Adams       ierr = DMViewFromOptions(dm_t[tid], NULL, "-dm_view");CHKERRQ(ierr);
2803c611800SMark Adams       for (i=0,vol=1;i<dim;i++) {
2813c611800SMark Adams         h[i] = (hi[i] - lo[i])/faces[i];
2823c611800SMark Adams         hp[i] = (hi[i] - lo[i])/Np[i];
2833c611800SMark Adams         vol *= (hi[i] - lo[i]);
2847d3de750SJacob Faibussowitsch         ierr = PetscInfo(dm_t[tid]," lo = %g hi = %g n = %D h = %g hp = %g\n",lo[i],hi[i],faces[i],h[i],hp[i]);CHKERRQ(ierr);
2853c611800SMark Adams       }
2863c611800SMark Adams     }
2873c611800SMark Adams   }
2883c611800SMark Adams   // prepare particle data for problems. This mimics application code
2893c611800SMark Adams   ierr = PetscLogEventBegin(swarm_create_ev,0,0,0,0);CHKERRQ(ierr);
2903c611800SMark Adams   Np2[0] = Np[0]; Np2[1] = Np[1];
2913c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) { // change size of particle list a little
2923c611800SMark Adams     Np_t[tid] = Np2[0]*Np2[1];
2933c611800SMark Adams     ierr = PetscMalloc3(Np_t[tid],&xx_t[tid],Np_t[tid],&yy_t[tid],Np_t[tid],&wp_t[tid]);CHKERRQ(ierr);
2943c611800SMark Adams     if (tid==target) {moments_0[0] = moments_0[1] = moments_0[2] = 0;}
2953c611800SMark Adams     for (int pi=0, pp=0;pi<Np2[0];pi++) {
2963c611800SMark Adams       for (int pj=0;pj<Np2[1];pj++,pp++) {
2973c611800SMark Adams         xx_t[tid][pp] = lo[0] + hp[0]/2. + pi*hp[0];
2983c611800SMark Adams         yy_t[tid][pp] = lo[1] + hp[1]/2. + pj*hp[1];
2993c611800SMark Adams         {
3003c611800SMark Adams           PetscReal x[] = {xx_t[tid][pp],yy_t[tid][pp]};
3013c611800SMark Adams           ierr = maxwellian(2, x, 1.0, vol/(PetscReal)Np_t[tid], &wp_t[tid][pp]);
3023c611800SMark Adams         }
3033c611800SMark Adams         if (tid==target) { //energy_0 += wp_t[tid][pp]*(PetscSqr(xx_t[tid][pp])+PetscSqr(yy_t[tid][pp]));
3043c611800SMark Adams           moments_0[0] += wp_t[tid][pp];
3053c611800SMark Adams           moments_0[1] += wp_t[tid][pp] * xx_t[tid][pp]; // x-momentum
3063c611800SMark Adams           moments_0[2] += wp_t[tid][pp] * (PetscSqr(xx_t[tid][pp]) + PetscSqr(yy_t[tid][pp]));
3073c611800SMark Adams         }
3083c611800SMark Adams       }
3093c611800SMark Adams     }
3103c611800SMark Adams     Np2[0]++; Np2[1]++;
3113c611800SMark Adams   }
3123c611800SMark Adams   ierr = PetscLogEventEnd(swarm_create_ev,0,0,0,0);CHKERRQ(ierr);
3133c611800SMark Adams   ierr = PetscLogEventBegin(solve_ev,0,0,0,0);CHKERRQ(ierr);
3143c611800SMark Adams   /* Create particle swarm */
3153c611800SMark Adams   PetscPragmaOMP(parallel for)
3163c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
3173c611800SMark Adams     PetscErrorCode  ierr_t;
3183c611800SMark Adams     ierr_t = createSwarm(dm_t[tid], &sw_t[tid]);
3193c611800SMark Adams     if (ierr_t) ierr = ierr_t;
3203c611800SMark Adams   }
3213c611800SMark Adams   CHKERRQ(ierr);
3223c611800SMark Adams   PetscPragmaOMP(parallel for)
3233c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
3243c611800SMark Adams     PetscErrorCode  ierr_t;
3253c611800SMark Adams     ierr_t = particlesToGrid(dm_t[tid], sw_t[tid], Np_t[tid], tid, dim, target, xx_t[tid], yy_t[tid], wp_t[tid], rho_t[tid], &M_p_t[tid]);
3263c611800SMark Adams     if (ierr_t) ierr = ierr_t;
3273c611800SMark Adams   }
3283c611800SMark Adams   CHKERRQ(ierr);
3293c611800SMark Adams   /* Project field to particles */
3303c611800SMark Adams   /*   This gives f_p = M_p^+ M f */
3313c611800SMark Adams   PetscPragmaOMP(parallel for)
3323c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
3333c611800SMark Adams     PetscErrorCode  ierr_t;
3343c611800SMark Adams     ierr_t = VecCopy(rho_t[tid], rhs_t[tid]); /* Identity: M^1 M rho */
3353c611800SMark Adams     if (ierr_t) ierr = ierr_t;
3363c611800SMark Adams   }
3373c611800SMark Adams   CHKERRQ(ierr);
3383c611800SMark Adams   PetscPragmaOMP(parallel for)
3393c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
3403c611800SMark Adams     PetscErrorCode  ierr_t;
3413c611800SMark Adams     ierr_t = gridToParticles(dm_t[tid], sw_t[tid], (tid==target) ?  moments_1 : NULL, rhs_t[tid], M_p_t[tid]);
3423c611800SMark Adams     if (ierr_t) ierr = ierr_t;
3433c611800SMark Adams   }
3443c611800SMark Adams   CHKERRQ(ierr);
3453c611800SMark Adams   /* Cleanup */
3463c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
3473c611800SMark Adams     ierr = MatDestroy(&M_p_t[tid]);CHKERRQ(ierr);
3483c611800SMark Adams     ierr = DMDestroy(&sw_t[tid]);CHKERRQ(ierr);
3493c611800SMark Adams   }
3503c611800SMark Adams   ierr = PetscLogEventEnd(solve_ev,0,0,0,0);CHKERRQ(ierr);
3513c611800SMark Adams   /* for timing */
3523c611800SMark Adams   ierr = PetscOptionsClearValue(NULL,"-ftop_ksp_converged_reason");CHKERRQ(ierr);
3533c611800SMark Adams   ierr = PetscOptionsClearValue(NULL,"-ftop_ksp_monitor");CHKERRQ(ierr);
3543c611800SMark Adams   ierr = PetscOptionsClearValue(NULL,"-ftop_ksp_view");CHKERRQ(ierr);
3553c611800SMark Adams   ierr = PetscOptionsClearValue(NULL,"-info");CHKERRQ(ierr);
3563c611800SMark Adams   // repeat solve many times to get warmed up data
3573c611800SMark Adams   ierr = PetscLogStagePush(stage);CHKERRQ(ierr);
3583c611800SMark Adams #if defined(PETSC_HAVE_OPENMP) && defined(PETSC_HAVE_THREADSAFETY)
3593c611800SMark Adams   starttime = MPI_Wtime();
3603c611800SMark Adams #endif
3613c611800SMark Adams   ierr = PetscLogEventBegin(solve_loop_ev,0,0,0,0);CHKERRQ(ierr);
3623c611800SMark Adams   for (int d=0; d<NUM_SOLVE_LOOPS; d++) {
3633c611800SMark Adams   /* Create particle swarm */
3643c611800SMark Adams     PetscPragmaOMP(parallel for)
3653c611800SMark Adams     for (int tid=0; tid<numthreads; tid++) {
3663c611800SMark Adams       PetscErrorCode  ierr_t;
3673c611800SMark Adams       ierr_t = createSwarm(dm_t[tid], &sw_t[tid]);
3683c611800SMark Adams       if (ierr_t) ierr = ierr_t;
3693c611800SMark Adams     }
3703c611800SMark Adams     CHKERRQ(ierr);
3713c611800SMark Adams     PetscPragmaOMP(parallel for)
3723c611800SMark Adams     for (int tid=0; tid<numthreads; tid++) {
3733c611800SMark Adams       PetscErrorCode  ierr_t;
3743c611800SMark Adams       ierr_t = particlesToGrid(dm_t[tid], sw_t[tid], Np_t[tid], tid, dim, target, xx_t[tid], yy_t[tid], wp_t[tid], rho_t[tid], &M_p_t[tid]);
3753c611800SMark Adams       if (ierr_t) ierr = ierr_t;
3763c611800SMark Adams     }
3773c611800SMark Adams     CHKERRQ(ierr);
3783c611800SMark Adams     PetscPragmaOMP(parallel for)
3793c611800SMark Adams     for (int tid=0; tid<numthreads; tid++) {
3803c611800SMark Adams       PetscErrorCode  ierr_t;
3813c611800SMark Adams       ierr_t = VecCopy(rho_t[tid], rhs_t[tid]); /* Identity: M^1 M rho */
3823c611800SMark Adams       if (ierr_t) ierr = ierr_t;
3833c611800SMark Adams     }
3843c611800SMark Adams     CHKERRQ(ierr);
3853c611800SMark Adams     PetscPragmaOMP(parallel for)
3863c611800SMark Adams     for (int tid=0; tid<numthreads; tid++) {
3873c611800SMark Adams       PetscErrorCode  ierr_t;
3883c611800SMark Adams       ierr_t = gridToParticles(dm_t[tid], sw_t[tid], NULL, rhs_t[tid], M_p_t[tid]);
3893c611800SMark Adams       if (ierr_t) ierr = ierr_t;
3903c611800SMark Adams     }
3913c611800SMark Adams     CHKERRQ(ierr);
3923c611800SMark Adams     /* Cleanup */
3933c611800SMark Adams     for (int tid=0; tid<numthreads; tid++) {
3943c611800SMark Adams       ierr = MatDestroy(&M_p_t[tid]);CHKERRQ(ierr);
3953c611800SMark Adams       ierr = DMDestroy(&sw_t[tid]);CHKERRQ(ierr);
3963c611800SMark Adams     }
3973c611800SMark Adams   }
3983c611800SMark Adams   ierr = PetscLogEventEnd(solve_loop_ev,0,0,0,0);CHKERRQ(ierr);
3993c611800SMark Adams #if defined(PETSC_HAVE_OPENMP) && defined(PETSC_HAVE_THREADSAFETY)
4003c611800SMark Adams   endtime = MPI_Wtime();
4013c611800SMark Adams   solve_time += (endtime - starttime);
4023c611800SMark Adams #endif
4033c611800SMark Adams   ierr = PetscLogStagePop();CHKERRQ(ierr);
4043c611800SMark Adams   //
4053c611800SMark Adams   ierr = PetscPrintf(PETSC_COMM_SELF,"Total number density: %20.12e (%20.12e); x-momentum = %g (%g); energy = %g error = %e, %D particles. Use %D threads, Solve time: %g\n", moments_1[0], moments_0[0], moments_1[1], moments_0[1], moments_1[2], (moments_1[2]-moments_0[2])/moments_0[2],Np[0]*Np[1],numthreads,solve_time);CHKERRQ(ierr);
4063c611800SMark Adams   /* Cleanup */
4073c611800SMark Adams   for (int tid=0; tid<numthreads; tid++) {
4083c611800SMark Adams     ierr = VecDestroy(&rho_t[tid]);CHKERRQ(ierr);
4093c611800SMark Adams     ierr = VecDestroy(&rhs_t[tid]);CHKERRQ(ierr);
4103c611800SMark Adams     ierr = DMDestroy(&dm_t[tid]);CHKERRQ(ierr);
4113c611800SMark Adams     ierr = PetscFree3(xx_t[tid],yy_t[tid],wp_t[tid]);CHKERRQ(ierr);
4123c611800SMark Adams   }
4133c611800SMark Adams 
4143c611800SMark Adams   PetscFunctionReturn(0);
4153c611800SMark Adams }
4163c611800SMark Adams 
4173c611800SMark Adams int main(int argc, char **argv)
4183c611800SMark Adams {
4193c611800SMark Adams   PetscErrorCode  ierr;
4203c611800SMark Adams   ierr = PetscInitialize(&argc, &argv, NULL,help);if (ierr) return ierr;
4213c611800SMark Adams   ierr = go();CHKERRQ(ierr);
4223c611800SMark Adams   ierr = PetscFinalize();
4233c611800SMark Adams   return ierr;
4243c611800SMark Adams }
4253c611800SMark Adams 
4263c611800SMark Adams /*TEST
4273c611800SMark Adams 
4283c611800SMark Adams   build:
4293c611800SMark Adams     requires: !complex
4303c611800SMark Adams 
4313c611800SMark Adams   test:
4323c611800SMark Adams     suffix: 0
4333c611800SMark Adams     requires: double triangle
4343c611800SMark Adams     args: -dm_plex_simplex 0 -dm_plex_box_faces 4,2 -dm_plex_box_lower -2.0,0.0 -dm_plex_box_upper 2.0,2.0 -petscspace_degree 2 -ftop_ksp_type lsqr -ftop_pc_type none -dm_view -ftop_ksp_converged_reason -ftop_ksp_rtol 1.e-14
4353c611800SMark Adams     filter: grep -v DM_ | grep -v atomic
4363c611800SMark Adams 
4373c611800SMark Adams   test:
4383c611800SMark Adams     suffix: 1
4393c611800SMark Adams     requires: double triangle
4403c611800SMark Adams     args: -dm_plex_simplex 0 -dm_plex_box_faces 4,2 -dm_plex_box_lower -2.0,0.0 -dm_plex_box_upper 2.0,2.0 -petscspace_degree 2 -dm_plex_hash_location -ftop_ksp_type lsqr -ftop_pc_type bjacobi -ftop_sub_pc_type lu -ftop_sub_pc_factor_shift_type nonzero -dm_view -ftop_ksp_converged_reason -ftop_ksp_rtol 1.e-14
4413c611800SMark Adams     filter: grep -v DM_ | grep -v atomic
4423c611800SMark Adams 
4433c611800SMark Adams   test:
4443c611800SMark Adams     suffix: 2
4453c611800SMark Adams     requires: double triangle
4463c611800SMark Adams     args: -dm_plex_simplex 0 -dm_plex_box_faces 4,2 -dm_plex_box_lower -2.0,0.0 -dm_plex_box_upper 2.0,2.0 -petscspace_degree 2 -dm_plex_hash_location -ftop_ksp_type cg -ftop_pc_type jacobi -dm_view -ftop_ksp_converged_reason -ftop_ksp_rtol 1.e-14
4473c611800SMark Adams     filter: grep -v DM_ | grep -v atomic
4483c611800SMark Adams 
4493c611800SMark Adams TEST*/
450