147c6ae99SBarry Smith #define PETSCDM_DLL 247c6ae99SBarry Smith 3e1589f56SBarry Smith #include "private/dmimpl.h" /*I "petscdm.h" I*/ 447c6ae99SBarry Smith 547c6ae99SBarry Smith #undef __FUNCT__ 6a4121054SBarry Smith #define __FUNCT__ "DMCreate" 7a4121054SBarry Smith /*@ 8a4121054SBarry Smith DMCreate - Creates an empty vector object. The type can then be set with DMetType(). 9a4121054SBarry Smith 10a4121054SBarry Smith If you never call DMSetType() it will generate an 11a4121054SBarry Smith error when you try to use the vector. 12a4121054SBarry Smith 13a4121054SBarry Smith Collective on MPI_Comm 14a4121054SBarry Smith 15a4121054SBarry Smith Input Parameter: 16a4121054SBarry Smith . comm - The communicator for the DM object 17a4121054SBarry Smith 18a4121054SBarry Smith Output Parameter: 19a4121054SBarry Smith . dm - The DM object 20a4121054SBarry Smith 21a4121054SBarry Smith Level: beginner 22a4121054SBarry Smith 23a4121054SBarry Smith .seealso: DMSetType(), DMDA, DMSLICED, DMCOMPOSITE 24a4121054SBarry Smith @*/ 25*1411c6eeSJed Brown PetscErrorCode PETSCVEC_DLLEXPORT DMCreate(MPI_Comm comm,DM *dm) 26a4121054SBarry Smith { 27a4121054SBarry Smith DM v; 28a4121054SBarry Smith PetscErrorCode ierr; 29a4121054SBarry Smith 30a4121054SBarry Smith PetscFunctionBegin; 31*1411c6eeSJed Brown PetscValidPointer(dm,2); 32*1411c6eeSJed Brown *dm = PETSC_NULL; 33a4121054SBarry Smith #ifndef PETSC_USE_DYNAMIC_LIBRARIES 34a4121054SBarry Smith ierr = DMInitializePackage(PETSC_NULL);CHKERRQ(ierr); 35a4121054SBarry Smith #endif 36a4121054SBarry Smith 37a4121054SBarry Smith ierr = PetscHeaderCreate(v, _p_DM, struct _DMOps, DM_CLASSID, -1, "DM", comm, DMDestroy, DMView);CHKERRQ(ierr); 38a4121054SBarry Smith ierr = PetscMemzero(v->ops, sizeof(struct _DMOps));CHKERRQ(ierr); 39*1411c6eeSJed Brown 40*1411c6eeSJed Brown v->ltogmap = PETSC_NULL; 41*1411c6eeSJed Brown v->ltogmapb = PETSC_NULL; 42*1411c6eeSJed Brown v->bs = 1; 43*1411c6eeSJed Brown 44*1411c6eeSJed Brown *dm = v; 45a4121054SBarry Smith PetscFunctionReturn(0); 46a4121054SBarry Smith } 47a4121054SBarry Smith 48a4121054SBarry Smith 49a4121054SBarry Smith #undef __FUNCT__ 509a42bb27SBarry Smith #define __FUNCT__ "DMSetVecType" 519a42bb27SBarry Smith /*@C 52564755cdSBarry Smith DMSetVecType - Sets the type of vector created with DMCreateLocalVector() and DMCreateGlobalVector() 539a42bb27SBarry Smith 54aa219208SBarry Smith Logically Collective on DMDA 559a42bb27SBarry Smith 569a42bb27SBarry Smith Input Parameter: 579a42bb27SBarry Smith + da - initial distributed array 589a42bb27SBarry Smith . ctype - the vector type, currently either VECSTANDARD or VECCUDA 599a42bb27SBarry Smith 609a42bb27SBarry Smith Options Database: 619a42bb27SBarry Smith . -da_vec_type ctype 629a42bb27SBarry Smith 639a42bb27SBarry Smith Level: intermediate 649a42bb27SBarry Smith 65aa219208SBarry Smith .seealso: DMDACreate1d(), DMDACreate2d(), DMDACreate3d(), DMDestroy(), DMDA, DMDAInterpolationType, VecType 669a42bb27SBarry Smith @*/ 679a42bb27SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetVecType(DM da,const VecType ctype) 689a42bb27SBarry Smith { 699a42bb27SBarry Smith PetscErrorCode ierr; 709a42bb27SBarry Smith 719a42bb27SBarry Smith PetscFunctionBegin; 729a42bb27SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 739a42bb27SBarry Smith ierr = PetscFree(da->vectype);CHKERRQ(ierr); 749a42bb27SBarry Smith ierr = PetscStrallocpy(ctype,&da->vectype);CHKERRQ(ierr); 759a42bb27SBarry Smith PetscFunctionReturn(0); 769a42bb27SBarry Smith } 779a42bb27SBarry Smith 789a42bb27SBarry Smith #undef __FUNCT__ 799a42bb27SBarry Smith #define __FUNCT__ "DMSetOptionsPrefix" 809a42bb27SBarry Smith /*@C 819a42bb27SBarry Smith DMSetOptionsPrefix - Sets the prefix used for searching for all 82aa219208SBarry Smith DMDA options in the database. 839a42bb27SBarry Smith 84aa219208SBarry Smith Logically Collective on DMDA 859a42bb27SBarry Smith 869a42bb27SBarry Smith Input Parameter: 87aa219208SBarry Smith + da - the DMDA context 889a42bb27SBarry Smith - prefix - the prefix to prepend to all option names 899a42bb27SBarry Smith 909a42bb27SBarry Smith Notes: 919a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 929a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 939a42bb27SBarry Smith 949a42bb27SBarry Smith Level: advanced 959a42bb27SBarry Smith 96aa219208SBarry Smith .keywords: DMDA, set, options, prefix, database 979a42bb27SBarry Smith 989a42bb27SBarry Smith .seealso: DMSetFromOptions() 999a42bb27SBarry Smith @*/ 1009a42bb27SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetOptionsPrefix(DM dm,const char prefix[]) 1019a42bb27SBarry Smith { 1029a42bb27SBarry Smith PetscErrorCode ierr; 1039a42bb27SBarry Smith 1049a42bb27SBarry Smith PetscFunctionBegin; 1059a42bb27SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1069a42bb27SBarry Smith ierr = PetscObjectSetOptionsPrefix((PetscObject)dm,prefix);CHKERRQ(ierr); 1079a42bb27SBarry Smith PetscFunctionReturn(0); 1089a42bb27SBarry Smith } 1099a42bb27SBarry Smith 1109a42bb27SBarry Smith #undef __FUNCT__ 11147c6ae99SBarry Smith #define __FUNCT__ "DMDestroy" 11247c6ae99SBarry Smith /*@ 113aa219208SBarry Smith DMDestroy - Destroys a vector packer or DMDA. 11447c6ae99SBarry Smith 11547c6ae99SBarry Smith Collective on DM 11647c6ae99SBarry Smith 11747c6ae99SBarry Smith Input Parameter: 11847c6ae99SBarry Smith . dm - the DM object to destroy 11947c6ae99SBarry Smith 12047c6ae99SBarry Smith Level: developer 12147c6ae99SBarry Smith 12247c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 12347c6ae99SBarry Smith 12447c6ae99SBarry Smith @*/ 12547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMDestroy(DM dm) 12647c6ae99SBarry Smith { 12747c6ae99SBarry Smith PetscErrorCode ierr; 12847c6ae99SBarry Smith 12947c6ae99SBarry Smith PetscFunctionBegin; 1300c010503SBarry Smith ierr = (*dm->ops->destroy)(dm);CHKERRQ(ierr); 13147c6ae99SBarry Smith PetscFunctionReturn(0); 13247c6ae99SBarry Smith } 13347c6ae99SBarry Smith 13447c6ae99SBarry Smith #undef __FUNCT__ 135d7bf68aeSBarry Smith #define __FUNCT__ "DMSetUp" 136d7bf68aeSBarry Smith /*@ 137d7bf68aeSBarry Smith DMSetUp - sets up the data structures inside a DM object 138d7bf68aeSBarry Smith 139d7bf68aeSBarry Smith Collective on DM 140d7bf68aeSBarry Smith 141d7bf68aeSBarry Smith Input Parameter: 142d7bf68aeSBarry Smith . dm - the DM object to setup 143d7bf68aeSBarry Smith 144d7bf68aeSBarry Smith Level: developer 145d7bf68aeSBarry Smith 146d7bf68aeSBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 147d7bf68aeSBarry Smith 148d7bf68aeSBarry Smith @*/ 149d7bf68aeSBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetUp(DM dm) 150d7bf68aeSBarry Smith { 151d7bf68aeSBarry Smith PetscErrorCode ierr; 152d7bf68aeSBarry Smith 153d7bf68aeSBarry Smith PetscFunctionBegin; 154d7bf68aeSBarry Smith if (dm->ops->setup) { 155d7bf68aeSBarry Smith ierr = (*dm->ops->setup)(dm);CHKERRQ(ierr); 156d7bf68aeSBarry Smith } 157d7bf68aeSBarry Smith PetscFunctionReturn(0); 158d7bf68aeSBarry Smith } 159d7bf68aeSBarry Smith 160d7bf68aeSBarry Smith #undef __FUNCT__ 161d7bf68aeSBarry Smith #define __FUNCT__ "DMSetFromOptions" 162d7bf68aeSBarry Smith /*@ 163d7bf68aeSBarry Smith DMSetFromOptions - sets parameters in a DM from the options database 164d7bf68aeSBarry Smith 165d7bf68aeSBarry Smith Collective on DM 166d7bf68aeSBarry Smith 167d7bf68aeSBarry Smith Input Parameter: 168d7bf68aeSBarry Smith . dm - the DM object to set options for 169d7bf68aeSBarry Smith 170d7bf68aeSBarry Smith Level: developer 171d7bf68aeSBarry Smith 172d7bf68aeSBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 173d7bf68aeSBarry Smith 174d7bf68aeSBarry Smith @*/ 175d7bf68aeSBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetFromOptions(DM dm) 176d7bf68aeSBarry Smith { 177d7bf68aeSBarry Smith PetscErrorCode ierr; 178d7bf68aeSBarry Smith 179d7bf68aeSBarry Smith PetscFunctionBegin; 180d7bf68aeSBarry Smith if (dm->ops->setfromoptions) { 181d7bf68aeSBarry Smith ierr = (*dm->ops->setfromoptions)(dm);CHKERRQ(ierr); 182d7bf68aeSBarry Smith } 183d7bf68aeSBarry Smith PetscFunctionReturn(0); 184d7bf68aeSBarry Smith } 185d7bf68aeSBarry Smith 186d7bf68aeSBarry Smith #undef __FUNCT__ 18747c6ae99SBarry Smith #define __FUNCT__ "DMView" 18847c6ae99SBarry Smith /*@ 189aa219208SBarry Smith DMView - Views a vector packer or DMDA. 19047c6ae99SBarry Smith 19147c6ae99SBarry Smith Collective on DM 19247c6ae99SBarry Smith 19347c6ae99SBarry Smith Input Parameter: 19447c6ae99SBarry Smith + dm - the DM object to view 19547c6ae99SBarry Smith - v - the viewer 19647c6ae99SBarry Smith 19747c6ae99SBarry Smith Level: developer 19847c6ae99SBarry Smith 19947c6ae99SBarry Smith .seealso DMDestroy(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 20047c6ae99SBarry Smith 20147c6ae99SBarry Smith @*/ 20247c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMView(DM dm,PetscViewer v) 20347c6ae99SBarry Smith { 20447c6ae99SBarry Smith PetscErrorCode ierr; 20547c6ae99SBarry Smith 20647c6ae99SBarry Smith PetscFunctionBegin; 2073014e516SBarry Smith if (!v) { 2083014e516SBarry Smith ierr = PetscViewerASCIIGetStdout(((PetscObject)dm)->comm,&v);CHKERRQ(ierr); 2093014e516SBarry Smith } 2100c010503SBarry Smith if (dm->ops->view) { 2110c010503SBarry Smith ierr = (*dm->ops->view)(dm,v);CHKERRQ(ierr); 21247c6ae99SBarry Smith } 21347c6ae99SBarry Smith PetscFunctionReturn(0); 21447c6ae99SBarry Smith } 21547c6ae99SBarry Smith 21647c6ae99SBarry Smith #undef __FUNCT__ 21747c6ae99SBarry Smith #define __FUNCT__ "DMCreateGlobalVector" 21847c6ae99SBarry Smith /*@ 219aa219208SBarry Smith DMCreateGlobalVector - Creates a global vector from a DMDA or DMComposite object 22047c6ae99SBarry Smith 22147c6ae99SBarry Smith Collective on DM 22247c6ae99SBarry Smith 22347c6ae99SBarry Smith Input Parameter: 22447c6ae99SBarry Smith . dm - the DM object 22547c6ae99SBarry Smith 22647c6ae99SBarry Smith Output Parameter: 22747c6ae99SBarry Smith . vec - the global vector 22847c6ae99SBarry Smith 22947c6ae99SBarry Smith Level: developer 23047c6ae99SBarry Smith 23147c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 23247c6ae99SBarry Smith 23347c6ae99SBarry Smith @*/ 23447c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMCreateGlobalVector(DM dm,Vec *vec) 23547c6ae99SBarry Smith { 23647c6ae99SBarry Smith PetscErrorCode ierr; 23747c6ae99SBarry Smith 23847c6ae99SBarry Smith PetscFunctionBegin; 23947c6ae99SBarry Smith ierr = (*dm->ops->createglobalvector)(dm,vec);CHKERRQ(ierr); 24047c6ae99SBarry Smith PetscFunctionReturn(0); 24147c6ae99SBarry Smith } 24247c6ae99SBarry Smith 24347c6ae99SBarry Smith #undef __FUNCT__ 24447c6ae99SBarry Smith #define __FUNCT__ "DMCreateLocalVector" 24547c6ae99SBarry Smith /*@ 246aa219208SBarry Smith DMCreateLocalVector - Creates a local vector from a DMDA or DMComposite object 24747c6ae99SBarry Smith 24847c6ae99SBarry Smith Not Collective 24947c6ae99SBarry Smith 25047c6ae99SBarry Smith Input Parameter: 25147c6ae99SBarry Smith . dm - the DM object 25247c6ae99SBarry Smith 25347c6ae99SBarry Smith Output Parameter: 25447c6ae99SBarry Smith . vec - the local vector 25547c6ae99SBarry Smith 25647c6ae99SBarry Smith Level: developer 25747c6ae99SBarry Smith 25847c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix() 25947c6ae99SBarry Smith 26047c6ae99SBarry Smith @*/ 26147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMCreateLocalVector(DM dm,Vec *vec) 26247c6ae99SBarry Smith { 26347c6ae99SBarry Smith PetscErrorCode ierr; 26447c6ae99SBarry Smith 26547c6ae99SBarry Smith PetscFunctionBegin; 26647c6ae99SBarry Smith ierr = (*dm->ops->createlocalvector)(dm,vec);CHKERRQ(ierr); 26747c6ae99SBarry Smith PetscFunctionReturn(0); 26847c6ae99SBarry Smith } 26947c6ae99SBarry Smith 27047c6ae99SBarry Smith #undef __FUNCT__ 271*1411c6eeSJed Brown #define __FUNCT__ "DMGetLocalToGlobalMapping" 272*1411c6eeSJed Brown /*@ 273*1411c6eeSJed Brown DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a DM. 274*1411c6eeSJed Brown 275*1411c6eeSJed Brown Collective on DM 276*1411c6eeSJed Brown 277*1411c6eeSJed Brown Input Parameter: 278*1411c6eeSJed Brown . dm - the DM that provides the mapping 279*1411c6eeSJed Brown 280*1411c6eeSJed Brown Output Parameter: 281*1411c6eeSJed Brown . ltog - the mapping 282*1411c6eeSJed Brown 283*1411c6eeSJed Brown Level: intermediate 284*1411c6eeSJed Brown 285*1411c6eeSJed Brown Notes: 286*1411c6eeSJed Brown This mapping can then be used by VecSetLocalToGlobalMapping() or 287*1411c6eeSJed Brown MatSetLocalToGlobalMapping(). 288*1411c6eeSJed Brown 289*1411c6eeSJed Brown .seealso: DMCreateLocalVector(), DMGetLocalToGlobalMappingBlock() 290*1411c6eeSJed Brown @*/ 291*1411c6eeSJed Brown PetscErrorCode PETSCDM_DLLEXPORT DMGetLocalToGlobalMapping(DM dm,ISLocalToGlobalMapping *ltog) 292*1411c6eeSJed Brown { 293*1411c6eeSJed Brown PetscErrorCode ierr; 294*1411c6eeSJed Brown 295*1411c6eeSJed Brown PetscFunctionBegin; 296*1411c6eeSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 297*1411c6eeSJed Brown PetscValidPointer(ltog,2); 298*1411c6eeSJed Brown if (!dm->ltogmap) { 299*1411c6eeSJed Brown if (!dm->ops->createlocaltoglobalmapping) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"DM can not create LocalToGlobalMapping"); 300*1411c6eeSJed Brown ierr = (*dm->ops->createlocaltoglobalmapping)(dm);CHKERRQ(ierr); 301*1411c6eeSJed Brown } 302*1411c6eeSJed Brown *ltog = dm->ltogmap; 303*1411c6eeSJed Brown PetscFunctionReturn(0); 304*1411c6eeSJed Brown } 305*1411c6eeSJed Brown 306*1411c6eeSJed Brown #undef __FUNCT__ 307*1411c6eeSJed Brown #define __FUNCT__ "DMGetLocalToGlobalMappingBlock" 308*1411c6eeSJed Brown /*@ 309*1411c6eeSJed Brown DMGetLocalToGlobalMappingBlock - Accesses the blocked local-to-global mapping in a DM. 310*1411c6eeSJed Brown 311*1411c6eeSJed Brown Collective on DM 312*1411c6eeSJed Brown 313*1411c6eeSJed Brown Input Parameter: 314*1411c6eeSJed Brown . da - the distributed array that provides the mapping 315*1411c6eeSJed Brown 316*1411c6eeSJed Brown Output Parameter: 317*1411c6eeSJed Brown . ltog - the block mapping 318*1411c6eeSJed Brown 319*1411c6eeSJed Brown Level: intermediate 320*1411c6eeSJed Brown 321*1411c6eeSJed Brown Notes: 322*1411c6eeSJed Brown This mapping can then be used by VecSetLocalToGlobalMappingBlock() or 323*1411c6eeSJed Brown MatSetLocalToGlobalMappingBlock(). 324*1411c6eeSJed Brown 325*1411c6eeSJed Brown .seealso: DMCreateLocalVector(), DMGetLocalToGlobalMapping(), DMGetBlockSize(), VecSetBlockSize(), MatSetBlockSize() 326*1411c6eeSJed Brown @*/ 327*1411c6eeSJed Brown PetscErrorCode PETSCDM_DLLEXPORT DMGetLocalToGlobalMappingBlock(DM dm,ISLocalToGlobalMapping *ltog) 328*1411c6eeSJed Brown { 329*1411c6eeSJed Brown PetscErrorCode ierr; 330*1411c6eeSJed Brown 331*1411c6eeSJed Brown PetscFunctionBegin; 332*1411c6eeSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 333*1411c6eeSJed Brown PetscValidPointer(ltog,2); 334*1411c6eeSJed Brown if (!dm->ltogmapb) { 335*1411c6eeSJed Brown PetscInt bs; 336*1411c6eeSJed Brown ierr = DMGetBlockSize(dm,&bs);CHKERRQ(ierr); 337*1411c6eeSJed Brown if (bs > 1) { 338*1411c6eeSJed Brown if (!dm->ops->createlocaltoglobalmappingblock) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"DM can not create LocalToGlobalMappingBlock"); 339*1411c6eeSJed Brown ierr = (*dm->ops->createlocaltoglobalmappingblock)(dm);CHKERRQ(ierr); 340*1411c6eeSJed Brown } else { 341*1411c6eeSJed Brown ierr = DMGetLocalToGlobalMapping(dm,&dm->ltogmapb);CHKERRQ(ierr); 342*1411c6eeSJed Brown ierr = PetscObjectReference((PetscObject)dm->ltogmapb);CHKERRQ(ierr); 343*1411c6eeSJed Brown } 344*1411c6eeSJed Brown } 345*1411c6eeSJed Brown *ltog = dm->ltogmapb; 346*1411c6eeSJed Brown PetscFunctionReturn(0); 347*1411c6eeSJed Brown } 348*1411c6eeSJed Brown 349*1411c6eeSJed Brown #undef __FUNCT__ 350*1411c6eeSJed Brown #define __FUNCT__ "DMGetBlockSize" 351*1411c6eeSJed Brown /*@ 352*1411c6eeSJed Brown DMGetBlockSize - Gets the inherent block size associated with a DM 353*1411c6eeSJed Brown 354*1411c6eeSJed Brown Not Collective 355*1411c6eeSJed Brown 356*1411c6eeSJed Brown Input Parameter: 357*1411c6eeSJed Brown . dm - the DM with block structure 358*1411c6eeSJed Brown 359*1411c6eeSJed Brown Output Parameter: 360*1411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 361*1411c6eeSJed Brown 362*1411c6eeSJed Brown Level: intermediate 363*1411c6eeSJed Brown 364*1411c6eeSJed Brown .seealso: ISCreateBlock(), VecSetBlockSize(), MatSetBlockSize(), DMGetLocalToGlobalMappingBlock() 365*1411c6eeSJed Brown @*/ 366*1411c6eeSJed Brown PetscErrorCode PETSCDM_DLLEXPORT DMGetBlockSize(DM dm,PetscInt *bs) 367*1411c6eeSJed Brown { 368*1411c6eeSJed Brown PetscFunctionBegin; 369*1411c6eeSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 370*1411c6eeSJed Brown PetscValidPointer(bs,2); 371*1411c6eeSJed Brown if (dm->bs < 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"DM does not have enough information to provide a block size yet"); 372*1411c6eeSJed Brown *bs = dm->bs; 373*1411c6eeSJed Brown PetscFunctionReturn(0); 374*1411c6eeSJed Brown } 375*1411c6eeSJed Brown 376*1411c6eeSJed Brown #undef __FUNCT__ 37747c6ae99SBarry Smith #define __FUNCT__ "DMGetInterpolation" 37847c6ae99SBarry Smith /*@ 379aa219208SBarry Smith DMGetInterpolation - Gets interpolation matrix between two DMDA or DMComposite objects 38047c6ae99SBarry Smith 38147c6ae99SBarry Smith Collective on DM 38247c6ae99SBarry Smith 38347c6ae99SBarry Smith Input Parameter: 38447c6ae99SBarry Smith + dm1 - the DM object 38547c6ae99SBarry Smith - dm2 - the second, finer DM object 38647c6ae99SBarry Smith 38747c6ae99SBarry Smith Output Parameter: 38847c6ae99SBarry Smith + mat - the interpolation 38947c6ae99SBarry Smith - vec - the scaling (optional) 39047c6ae99SBarry Smith 39147c6ae99SBarry Smith Level: developer 39247c6ae99SBarry Smith 39347c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetColoring(), DMGetMatrix() 39447c6ae99SBarry Smith 39547c6ae99SBarry Smith @*/ 39647c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetInterpolation(DM dm1,DM dm2,Mat *mat,Vec *vec) 39747c6ae99SBarry Smith { 39847c6ae99SBarry Smith PetscErrorCode ierr; 39947c6ae99SBarry Smith 40047c6ae99SBarry Smith PetscFunctionBegin; 40147c6ae99SBarry Smith ierr = (*dm1->ops->getinterpolation)(dm1,dm2,mat,vec);CHKERRQ(ierr); 40247c6ae99SBarry Smith PetscFunctionReturn(0); 40347c6ae99SBarry Smith } 40447c6ae99SBarry Smith 40547c6ae99SBarry Smith #undef __FUNCT__ 40647c6ae99SBarry Smith #define __FUNCT__ "DMGetInjection" 40747c6ae99SBarry Smith /*@ 408aa219208SBarry Smith DMGetInjection - Gets injection matrix between two DMDA or DMComposite objects 40947c6ae99SBarry Smith 41047c6ae99SBarry Smith Collective on DM 41147c6ae99SBarry Smith 41247c6ae99SBarry Smith Input Parameter: 41347c6ae99SBarry Smith + dm1 - the DM object 41447c6ae99SBarry Smith - dm2 - the second, finer DM object 41547c6ae99SBarry Smith 41647c6ae99SBarry Smith Output Parameter: 41747c6ae99SBarry Smith . ctx - the injection 41847c6ae99SBarry Smith 41947c6ae99SBarry Smith Level: developer 42047c6ae99SBarry Smith 42147c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetColoring(), DMGetMatrix(), DMGetInterpolation() 42247c6ae99SBarry Smith 42347c6ae99SBarry Smith @*/ 42447c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetInjection(DM dm1,DM dm2,VecScatter *ctx) 42547c6ae99SBarry Smith { 42647c6ae99SBarry Smith PetscErrorCode ierr; 42747c6ae99SBarry Smith 42847c6ae99SBarry Smith PetscFunctionBegin; 42947c6ae99SBarry Smith ierr = (*dm1->ops->getinjection)(dm1,dm2,ctx);CHKERRQ(ierr); 43047c6ae99SBarry Smith PetscFunctionReturn(0); 43147c6ae99SBarry Smith } 43247c6ae99SBarry Smith 43347c6ae99SBarry Smith #undef __FUNCT__ 43447c6ae99SBarry Smith #define __FUNCT__ "DMGetColoring" 43547c6ae99SBarry Smith /*@ 436aa219208SBarry Smith DMGetColoring - Gets coloring for a DMDA or DMComposite 43747c6ae99SBarry Smith 43847c6ae99SBarry Smith Collective on DM 43947c6ae99SBarry Smith 44047c6ae99SBarry Smith Input Parameter: 44147c6ae99SBarry Smith + dm - the DM object 44247c6ae99SBarry Smith . ctype - IS_COLORING_GHOSTED or IS_COLORING_GLOBAL 44347c6ae99SBarry Smith - matype - either MATAIJ or MATBAIJ 44447c6ae99SBarry Smith 44547c6ae99SBarry Smith Output Parameter: 44647c6ae99SBarry Smith . coloring - the coloring 44747c6ae99SBarry Smith 44847c6ae99SBarry Smith Level: developer 44947c6ae99SBarry Smith 45047c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetMatrix() 45147c6ae99SBarry Smith 45247c6ae99SBarry Smith @*/ 45347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetColoring(DM dm,ISColoringType ctype,const MatType mtype,ISColoring *coloring) 45447c6ae99SBarry Smith { 45547c6ae99SBarry Smith PetscErrorCode ierr; 45647c6ae99SBarry Smith 45747c6ae99SBarry Smith PetscFunctionBegin; 45847c6ae99SBarry Smith if (!dm->ops->getcoloring) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"No coloring for this type of DM yet"); 45947c6ae99SBarry Smith ierr = (*dm->ops->getcoloring)(dm,ctype,mtype,coloring);CHKERRQ(ierr); 46047c6ae99SBarry Smith PetscFunctionReturn(0); 46147c6ae99SBarry Smith } 46247c6ae99SBarry Smith 46347c6ae99SBarry Smith #undef __FUNCT__ 46447c6ae99SBarry Smith #define __FUNCT__ "DMGetMatrix" 46547c6ae99SBarry Smith /*@C 466aa219208SBarry Smith DMGetMatrix - Gets empty Jacobian for a DMDA or DMComposite 46747c6ae99SBarry Smith 46847c6ae99SBarry Smith Collective on DM 46947c6ae99SBarry Smith 47047c6ae99SBarry Smith Input Parameter: 47147c6ae99SBarry Smith + dm - the DM object 47247c6ae99SBarry Smith - mtype - Supported types are MATSEQAIJ, MATMPIAIJ, MATSEQBAIJ, MATMPIBAIJ, or 47394013140SBarry Smith any type which inherits from one of these (such as MATAIJ) 47447c6ae99SBarry Smith 47547c6ae99SBarry Smith Output Parameter: 47647c6ae99SBarry Smith . mat - the empty Jacobian 47747c6ae99SBarry Smith 47847c6ae99SBarry Smith Level: developer 47947c6ae99SBarry Smith 48094013140SBarry Smith Notes: This properly preallocates the number of nonzeros in the sparse matrix so you 48194013140SBarry Smith do not need to do it yourself. 48294013140SBarry Smith 48394013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 484aa219208SBarry Smith the nonzero pattern call DMDASetMatPreallocateOnly() 48594013140SBarry Smith 48694013140SBarry Smith For structured grid problems, when you call MatView() on this matrix it is displayed using the global natural ordering, NOT in the ordering used 48794013140SBarry Smith internally by PETSc. 48894013140SBarry Smith 48994013140SBarry Smith For structured grid problems, in general it is easiest to use MatSetValuesStencil() or MatSetValuesLocal() to put values into the matrix because MatSetValues() requires 490aa219208SBarry Smith the indices for the global numbering for DMDAs which is complicated. 49194013140SBarry Smith 49247c6ae99SBarry Smith .seealso DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetMatrix() 49347c6ae99SBarry Smith 49447c6ae99SBarry Smith @*/ 49547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetMatrix(DM dm, const MatType mtype,Mat *mat) 49647c6ae99SBarry Smith { 49747c6ae99SBarry Smith PetscErrorCode ierr; 49847c6ae99SBarry Smith 49947c6ae99SBarry Smith PetscFunctionBegin; 50047c6ae99SBarry Smith ierr = (*dm->ops->getmatrix)(dm,mtype,mat);CHKERRQ(ierr); 50147c6ae99SBarry Smith PetscFunctionReturn(0); 50247c6ae99SBarry Smith } 50347c6ae99SBarry Smith 50447c6ae99SBarry Smith #undef __FUNCT__ 50547c6ae99SBarry Smith #define __FUNCT__ "DMRefine" 50647c6ae99SBarry Smith /*@ 50747c6ae99SBarry Smith DMRefine - Refines a DM object 50847c6ae99SBarry Smith 50947c6ae99SBarry Smith Collective on DM 51047c6ae99SBarry Smith 51147c6ae99SBarry Smith Input Parameter: 51247c6ae99SBarry Smith + dm - the DM object 51347c6ae99SBarry Smith - comm - the communicator to contain the new DM object (or PETSC_NULL) 51447c6ae99SBarry Smith 51547c6ae99SBarry Smith Output Parameter: 51647c6ae99SBarry Smith . dmf - the refined DM 51747c6ae99SBarry Smith 51847c6ae99SBarry Smith Level: developer 51947c6ae99SBarry Smith 52047c6ae99SBarry Smith .seealso DMCoarsen(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation() 52147c6ae99SBarry Smith 52247c6ae99SBarry Smith @*/ 52347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMRefine(DM dm,MPI_Comm comm,DM *dmf) 52447c6ae99SBarry Smith { 52547c6ae99SBarry Smith PetscErrorCode ierr; 52647c6ae99SBarry Smith 52747c6ae99SBarry Smith PetscFunctionBegin; 52847c6ae99SBarry Smith ierr = (*dm->ops->refine)(dm,comm,dmf);CHKERRQ(ierr); 52947c6ae99SBarry Smith PetscFunctionReturn(0); 53047c6ae99SBarry Smith } 53147c6ae99SBarry Smith 53247c6ae99SBarry Smith #undef __FUNCT__ 53347c6ae99SBarry Smith #define __FUNCT__ "DMGlobalToLocalBegin" 53447c6ae99SBarry Smith /*@ 53547c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 53647c6ae99SBarry Smith 53747c6ae99SBarry Smith Neighbor-wise Collective on DM 53847c6ae99SBarry Smith 53947c6ae99SBarry Smith Input Parameters: 54047c6ae99SBarry Smith + dm - the DM object 54147c6ae99SBarry Smith . g - the global vector 54247c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 54347c6ae99SBarry Smith - l - the local vector 54447c6ae99SBarry Smith 54547c6ae99SBarry Smith 54647c6ae99SBarry Smith Level: beginner 54747c6ae99SBarry Smith 5489a42bb27SBarry Smith .seealso DMCoarsen(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGlobalToLocalEnd(), DMLocalToGlobalBegin() 54947c6ae99SBarry Smith 55047c6ae99SBarry Smith @*/ 55147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGlobalToLocalBegin(DM dm,Vec g,InsertMode mode,Vec l) 55247c6ae99SBarry Smith { 55347c6ae99SBarry Smith PetscErrorCode ierr; 55447c6ae99SBarry Smith 55547c6ae99SBarry Smith PetscFunctionBegin; 55647c6ae99SBarry Smith ierr = (*dm->ops->globaltolocalbegin)(dm,g,mode,l);CHKERRQ(ierr); 55747c6ae99SBarry Smith PetscFunctionReturn(0); 55847c6ae99SBarry Smith } 55947c6ae99SBarry Smith 56047c6ae99SBarry Smith #undef __FUNCT__ 56147c6ae99SBarry Smith #define __FUNCT__ "DMGlobalToLocalEnd" 56247c6ae99SBarry Smith /*@ 56347c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 56447c6ae99SBarry Smith 56547c6ae99SBarry Smith Neighbor-wise Collective on DM 56647c6ae99SBarry Smith 56747c6ae99SBarry Smith Input Parameters: 56847c6ae99SBarry Smith + dm - the DM object 56947c6ae99SBarry Smith . g - the global vector 57047c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 57147c6ae99SBarry Smith - l - the local vector 57247c6ae99SBarry Smith 57347c6ae99SBarry Smith 57447c6ae99SBarry Smith Level: beginner 57547c6ae99SBarry Smith 5769a42bb27SBarry Smith .seealso DMCoarsen(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGlobalToLocalEnd(), DMLocalToGlobalBegin() 57747c6ae99SBarry Smith 57847c6ae99SBarry Smith @*/ 57947c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGlobalToLocalEnd(DM dm,Vec g,InsertMode mode,Vec l) 58047c6ae99SBarry Smith { 58147c6ae99SBarry Smith PetscErrorCode ierr; 58247c6ae99SBarry Smith 58347c6ae99SBarry Smith PetscFunctionBegin; 58447c6ae99SBarry Smith ierr = (*dm->ops->globaltolocalend)(dm,g,mode,l);CHKERRQ(ierr); 58547c6ae99SBarry Smith PetscFunctionReturn(0); 58647c6ae99SBarry Smith } 58747c6ae99SBarry Smith 58847c6ae99SBarry Smith #undef __FUNCT__ 5899a42bb27SBarry Smith #define __FUNCT__ "DMLocalToGlobalBegin" 59047c6ae99SBarry Smith /*@ 5919a42bb27SBarry Smith DMLocalToGlobalBegin - updates global vectors from local vectors 5929a42bb27SBarry Smith 5939a42bb27SBarry Smith Neighbor-wise Collective on DM 5949a42bb27SBarry Smith 5959a42bb27SBarry Smith Input Parameters: 5969a42bb27SBarry Smith + dm - the DM object 597f6813fd5SJed Brown . l - the local vector 5989a42bb27SBarry Smith . mode - if INSERT_VALUES then no parallel communication is used, if ADD_VALUES then all ghost points from the same base point accumulate into that 5999a42bb27SBarry Smith base point. 600f6813fd5SJed Brown - - the global vector 6019a42bb27SBarry Smith 6029a42bb27SBarry Smith Notes: In the ADD_VALUES case you normally would zero the receiving vector before beginning this operation. If you would like to simply add the non-ghosted values in the local 6039a42bb27SBarry Smith array into the global array you need to either (1) zero the ghosted locations and use ADD_VALUES or (2) use INSERT_VALUES into a work global array and then add the work 6049a42bb27SBarry Smith global array to the final global array with VecAXPY(). 6059a42bb27SBarry Smith 6069a42bb27SBarry Smith Level: beginner 6079a42bb27SBarry Smith 6089a42bb27SBarry Smith .seealso DMCoarsen(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGlobalToLocalEnd(), DMGlobalToLocalBegin() 6099a42bb27SBarry Smith 6109a42bb27SBarry Smith @*/ 611f6813fd5SJed Brown PetscErrorCode PETSCDM_DLLEXPORT DMLocalToGlobalBegin(DM dm,Vec l,InsertMode mode,Vec g) 6129a42bb27SBarry Smith { 6139a42bb27SBarry Smith PetscErrorCode ierr; 6149a42bb27SBarry Smith 6159a42bb27SBarry Smith PetscFunctionBegin; 616f6813fd5SJed Brown ierr = (*dm->ops->localtoglobalbegin)(dm,l,mode,g);CHKERRQ(ierr); 6179a42bb27SBarry Smith PetscFunctionReturn(0); 6189a42bb27SBarry Smith } 6199a42bb27SBarry Smith 6209a42bb27SBarry Smith #undef __FUNCT__ 6219a42bb27SBarry Smith #define __FUNCT__ "DMLocalToGlobalEnd" 6229a42bb27SBarry Smith /*@ 6239a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 62447c6ae99SBarry Smith 62547c6ae99SBarry Smith Neighbor-wise Collective on DM 62647c6ae99SBarry Smith 62747c6ae99SBarry Smith Input Parameters: 62847c6ae99SBarry Smith + dm - the DM object 629f6813fd5SJed Brown . l - the local vector 63047c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 631f6813fd5SJed Brown - g - the global vector 63247c6ae99SBarry Smith 63347c6ae99SBarry Smith 63447c6ae99SBarry Smith Level: beginner 63547c6ae99SBarry Smith 6369a42bb27SBarry Smith .seealso DMCoarsen(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGlobalToLocalEnd(), DMGlobalToLocalEnd() 63747c6ae99SBarry Smith 63847c6ae99SBarry Smith @*/ 639f6813fd5SJed Brown PetscErrorCode PETSCDM_DLLEXPORT DMLocalToGlobalEnd(DM dm,Vec l,InsertMode mode,Vec g) 64047c6ae99SBarry Smith { 64147c6ae99SBarry Smith PetscErrorCode ierr; 64247c6ae99SBarry Smith 64347c6ae99SBarry Smith PetscFunctionBegin; 644f6813fd5SJed Brown ierr = (*dm->ops->localtoglobalend)(dm,l,mode,g);CHKERRQ(ierr); 64547c6ae99SBarry Smith PetscFunctionReturn(0); 64647c6ae99SBarry Smith } 64747c6ae99SBarry Smith 64847c6ae99SBarry Smith #undef __FUNCT__ 64947c6ae99SBarry Smith #define __FUNCT__ "DMComputeJacobianDefault" 65047c6ae99SBarry Smith /*@ 65147c6ae99SBarry Smith DMComputeJacobianDefault - computes the Jacobian using the DMComputeFunction() if Jacobian computer is not provided 65247c6ae99SBarry Smith 65347c6ae99SBarry Smith Collective on DM 65447c6ae99SBarry Smith 65547c6ae99SBarry Smith Input Parameter: 65647c6ae99SBarry Smith + dm - the DM object 65747c6ae99SBarry Smith . x - location to compute Jacobian at; may be ignored for linear problems 65847c6ae99SBarry Smith . A - matrix that defines the operator for the linear solve 65947c6ae99SBarry Smith - B - the matrix used to construct the preconditioner 66047c6ae99SBarry Smith 66147c6ae99SBarry Smith Level: developer 66247c6ae99SBarry Smith 66347c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetInitialGuess(), 66447c6ae99SBarry Smith DMSetFunction() 66547c6ae99SBarry Smith 66647c6ae99SBarry Smith @*/ 66747c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeJacobianDefault(DM dm,Vec x,Mat A,Mat B,MatStructure *stflag) 66847c6ae99SBarry Smith { 66947c6ae99SBarry Smith PetscErrorCode ierr; 67047c6ae99SBarry Smith PetscFunctionBegin; 67147c6ae99SBarry Smith *stflag = SAME_NONZERO_PATTERN; 67247c6ae99SBarry Smith ierr = MatFDColoringApply(B,dm->fd,x,stflag,dm);CHKERRQ(ierr); 67347c6ae99SBarry Smith if (A != B) { 67447c6ae99SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 67547c6ae99SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 67647c6ae99SBarry Smith } 67747c6ae99SBarry Smith PetscFunctionReturn(0); 67847c6ae99SBarry Smith } 67947c6ae99SBarry Smith 68047c6ae99SBarry Smith #undef __FUNCT__ 68147c6ae99SBarry Smith #define __FUNCT__ "DMCoarsen" 68247c6ae99SBarry Smith /*@ 68347c6ae99SBarry Smith DMCoarsen - Coarsens a DM object 68447c6ae99SBarry Smith 68547c6ae99SBarry Smith Collective on DM 68647c6ae99SBarry Smith 68747c6ae99SBarry Smith Input Parameter: 68847c6ae99SBarry Smith + dm - the DM object 68947c6ae99SBarry Smith - comm - the communicator to contain the new DM object (or PETSC_NULL) 69047c6ae99SBarry Smith 69147c6ae99SBarry Smith Output Parameter: 69247c6ae99SBarry Smith . dmc - the coarsened DM 69347c6ae99SBarry Smith 69447c6ae99SBarry Smith Level: developer 69547c6ae99SBarry Smith 69647c6ae99SBarry Smith .seealso DMRefine(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation() 69747c6ae99SBarry Smith 69847c6ae99SBarry Smith @*/ 69947c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 70047c6ae99SBarry Smith { 70147c6ae99SBarry Smith PetscErrorCode ierr; 70247c6ae99SBarry Smith 70347c6ae99SBarry Smith PetscFunctionBegin; 70447c6ae99SBarry Smith ierr = (*dm->ops->coarsen)(dm, comm, dmc);CHKERRQ(ierr); 70547c6ae99SBarry Smith (*dmc)->ops->initialguess = dm->ops->initialguess; 70647c6ae99SBarry Smith (*dmc)->ops->function = dm->ops->function; 70747c6ae99SBarry Smith (*dmc)->ops->functionj = dm->ops->functionj; 70847c6ae99SBarry Smith if (dm->ops->jacobian != DMComputeJacobianDefault) { 70947c6ae99SBarry Smith (*dmc)->ops->jacobian = dm->ops->jacobian; 71047c6ae99SBarry Smith } 71147c6ae99SBarry Smith PetscFunctionReturn(0); 71247c6ae99SBarry Smith } 71347c6ae99SBarry Smith 71447c6ae99SBarry Smith #undef __FUNCT__ 71547c6ae99SBarry Smith #define __FUNCT__ "DMRefineHierarchy" 71647c6ae99SBarry Smith /*@C 71747c6ae99SBarry Smith DMRefineHierarchy - Refines a DM object, all levels at once 71847c6ae99SBarry Smith 71947c6ae99SBarry Smith Collective on DM 72047c6ae99SBarry Smith 72147c6ae99SBarry Smith Input Parameter: 72247c6ae99SBarry Smith + dm - the DM object 72347c6ae99SBarry Smith - nlevels - the number of levels of refinement 72447c6ae99SBarry Smith 72547c6ae99SBarry Smith Output Parameter: 72647c6ae99SBarry Smith . dmf - the refined DM hierarchy 72747c6ae99SBarry Smith 72847c6ae99SBarry Smith Level: developer 72947c6ae99SBarry Smith 73047c6ae99SBarry Smith .seealso DMCoarsenHierarchy(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation() 73147c6ae99SBarry Smith 73247c6ae99SBarry Smith @*/ 73347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMRefineHierarchy(DM dm,PetscInt nlevels,DM dmf[]) 73447c6ae99SBarry Smith { 73547c6ae99SBarry Smith PetscErrorCode ierr; 73647c6ae99SBarry Smith 73747c6ae99SBarry Smith PetscFunctionBegin; 73847c6ae99SBarry Smith if (nlevels < 0) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_OUTOFRANGE,"nlevels cannot be negative"); 73947c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 74047c6ae99SBarry Smith if (dm->ops->refinehierarchy) { 74147c6ae99SBarry Smith ierr = (*dm->ops->refinehierarchy)(dm,nlevels,dmf);CHKERRQ(ierr); 74247c6ae99SBarry Smith } else if (dm->ops->refine) { 74347c6ae99SBarry Smith PetscInt i; 74447c6ae99SBarry Smith 74547c6ae99SBarry Smith ierr = DMRefine(dm,((PetscObject)dm)->comm,&dmf[0]);CHKERRQ(ierr); 74647c6ae99SBarry Smith for (i=1; i<nlevels; i++) { 74747c6ae99SBarry Smith ierr = DMRefine(dmf[i-1],((PetscObject)dm)->comm,&dmf[i]);CHKERRQ(ierr); 74847c6ae99SBarry Smith } 74947c6ae99SBarry Smith } else { 75047c6ae99SBarry Smith SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"No RefineHierarchy for this DM yet"); 75147c6ae99SBarry Smith } 75247c6ae99SBarry Smith PetscFunctionReturn(0); 75347c6ae99SBarry Smith } 75447c6ae99SBarry Smith 75547c6ae99SBarry Smith #undef __FUNCT__ 75647c6ae99SBarry Smith #define __FUNCT__ "DMCoarsenHierarchy" 75747c6ae99SBarry Smith /*@C 75847c6ae99SBarry Smith DMCoarsenHierarchy - Coarsens a DM object, all levels at once 75947c6ae99SBarry Smith 76047c6ae99SBarry Smith Collective on DM 76147c6ae99SBarry Smith 76247c6ae99SBarry Smith Input Parameter: 76347c6ae99SBarry Smith + dm - the DM object 76447c6ae99SBarry Smith - nlevels - the number of levels of coarsening 76547c6ae99SBarry Smith 76647c6ae99SBarry Smith Output Parameter: 76747c6ae99SBarry Smith . dmc - the coarsened DM hierarchy 76847c6ae99SBarry Smith 76947c6ae99SBarry Smith Level: developer 77047c6ae99SBarry Smith 77147c6ae99SBarry Smith .seealso DMRefineHierarchy(), DMDestroy(), DMView(), DMCreateGlobalVector(), DMGetInterpolation() 77247c6ae99SBarry Smith 77347c6ae99SBarry Smith @*/ 77447c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 77547c6ae99SBarry Smith { 77647c6ae99SBarry Smith PetscErrorCode ierr; 77747c6ae99SBarry Smith 77847c6ae99SBarry Smith PetscFunctionBegin; 77947c6ae99SBarry Smith if (nlevels < 0) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_OUTOFRANGE,"nlevels cannot be negative"); 78047c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 78147c6ae99SBarry Smith PetscValidPointer(dmc,3); 78247c6ae99SBarry Smith if (dm->ops->coarsenhierarchy) { 78347c6ae99SBarry Smith ierr = (*dm->ops->coarsenhierarchy)(dm, nlevels, dmc);CHKERRQ(ierr); 78447c6ae99SBarry Smith } else if (dm->ops->coarsen) { 78547c6ae99SBarry Smith PetscInt i; 78647c6ae99SBarry Smith 78747c6ae99SBarry Smith ierr = DMCoarsen(dm,((PetscObject)dm)->comm,&dmc[0]);CHKERRQ(ierr); 78847c6ae99SBarry Smith for (i=1; i<nlevels; i++) { 78947c6ae99SBarry Smith ierr = DMCoarsen(dmc[i-1],((PetscObject)dm)->comm,&dmc[i]);CHKERRQ(ierr); 79047c6ae99SBarry Smith } 79147c6ae99SBarry Smith } else { 79247c6ae99SBarry Smith SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_SUP,"No CoarsenHierarchy for this DM yet"); 79347c6ae99SBarry Smith } 79447c6ae99SBarry Smith PetscFunctionReturn(0); 79547c6ae99SBarry Smith } 79647c6ae99SBarry Smith 79747c6ae99SBarry Smith #undef __FUNCT__ 79847c6ae99SBarry Smith #define __FUNCT__ "DMGetAggregates" 79947c6ae99SBarry Smith /*@ 80047c6ae99SBarry Smith DMGetAggregates - Gets the aggregates that map between 80147c6ae99SBarry Smith grids associated with two DMs. 80247c6ae99SBarry Smith 80347c6ae99SBarry Smith Collective on DM 80447c6ae99SBarry Smith 80547c6ae99SBarry Smith Input Parameters: 80647c6ae99SBarry Smith + dmc - the coarse grid DM 80747c6ae99SBarry Smith - dmf - the fine grid DM 80847c6ae99SBarry Smith 80947c6ae99SBarry Smith Output Parameters: 81047c6ae99SBarry Smith . rest - the restriction matrix (transpose of the projection matrix) 81147c6ae99SBarry Smith 81247c6ae99SBarry Smith Level: intermediate 81347c6ae99SBarry Smith 81447c6ae99SBarry Smith .keywords: interpolation, restriction, multigrid 81547c6ae99SBarry Smith 81647c6ae99SBarry Smith .seealso: DMRefine(), DMGetInjection(), DMGetInterpolation() 81747c6ae99SBarry Smith @*/ 81847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetAggregates(DM dmc, DM dmf, Mat *rest) 81947c6ae99SBarry Smith { 82047c6ae99SBarry Smith PetscErrorCode ierr; 82147c6ae99SBarry Smith 82247c6ae99SBarry Smith PetscFunctionBegin; 82347c6ae99SBarry Smith ierr = (*dmc->ops->getaggregates)(dmc, dmf, rest);CHKERRQ(ierr); 82447c6ae99SBarry Smith PetscFunctionReturn(0); 82547c6ae99SBarry Smith } 82647c6ae99SBarry Smith 82747c6ae99SBarry Smith #undef __FUNCT__ 82847c6ae99SBarry Smith #define __FUNCT__ "DMSetContext" 82947c6ae99SBarry Smith /*@ 83047c6ae99SBarry Smith DMSetContext - Set a user context into a DM object 83147c6ae99SBarry Smith 83247c6ae99SBarry Smith Not Collective 83347c6ae99SBarry Smith 83447c6ae99SBarry Smith Input Parameters: 83547c6ae99SBarry Smith + dm - the DM object 83647c6ae99SBarry Smith - ctx - the user context 83747c6ae99SBarry Smith 83847c6ae99SBarry Smith Level: intermediate 83947c6ae99SBarry Smith 84047c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext() 84147c6ae99SBarry Smith 84247c6ae99SBarry Smith @*/ 84347c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetContext(DM dm,void *ctx) 84447c6ae99SBarry Smith { 84547c6ae99SBarry Smith PetscFunctionBegin; 84647c6ae99SBarry Smith dm->ctx = ctx; 84747c6ae99SBarry Smith PetscFunctionReturn(0); 84847c6ae99SBarry Smith } 84947c6ae99SBarry Smith 85047c6ae99SBarry Smith #undef __FUNCT__ 85147c6ae99SBarry Smith #define __FUNCT__ "DMGetContext" 85247c6ae99SBarry Smith /*@ 85347c6ae99SBarry Smith DMGetContext - Gets a user context from a DM object 85447c6ae99SBarry Smith 85547c6ae99SBarry Smith Not Collective 85647c6ae99SBarry Smith 85747c6ae99SBarry Smith Input Parameter: 85847c6ae99SBarry Smith . dm - the DM object 85947c6ae99SBarry Smith 86047c6ae99SBarry Smith Output Parameter: 86147c6ae99SBarry Smith . ctx - the user context 86247c6ae99SBarry Smith 86347c6ae99SBarry Smith Level: intermediate 86447c6ae99SBarry Smith 86547c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext() 86647c6ae99SBarry Smith 86747c6ae99SBarry Smith @*/ 86847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetContext(DM dm,void **ctx) 86947c6ae99SBarry Smith { 87047c6ae99SBarry Smith PetscFunctionBegin; 87147c6ae99SBarry Smith *ctx = dm->ctx; 87247c6ae99SBarry Smith PetscFunctionReturn(0); 87347c6ae99SBarry Smith } 87447c6ae99SBarry Smith 87547c6ae99SBarry Smith #undef __FUNCT__ 87647c6ae99SBarry Smith #define __FUNCT__ "DMSetInitialGuess" 87747c6ae99SBarry Smith /*@ 87847c6ae99SBarry Smith DMSetInitialGuess - sets a function to compute an initial guess vector entries for the solvers 87947c6ae99SBarry Smith 88047c6ae99SBarry Smith Logically Collective on DM 88147c6ae99SBarry Smith 88247c6ae99SBarry Smith Input Parameter: 88347c6ae99SBarry Smith + dm - the DM object to destroy 88447c6ae99SBarry Smith - f - the function to compute the initial guess 88547c6ae99SBarry Smith 88647c6ae99SBarry Smith Level: intermediate 88747c6ae99SBarry Smith 88847c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetFunction(), DMSetJacobian() 88947c6ae99SBarry Smith 89047c6ae99SBarry Smith @*/ 89147c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetInitialGuess(DM dm,PetscErrorCode (*f)(DM,Vec)) 89247c6ae99SBarry Smith { 89347c6ae99SBarry Smith PetscFunctionBegin; 89447c6ae99SBarry Smith dm->ops->initialguess = f; 89547c6ae99SBarry Smith PetscFunctionReturn(0); 89647c6ae99SBarry Smith } 89747c6ae99SBarry Smith 89847c6ae99SBarry Smith #undef __FUNCT__ 89947c6ae99SBarry Smith #define __FUNCT__ "DMSetFunction" 90047c6ae99SBarry Smith /*@ 90147c6ae99SBarry Smith DMSetFunction - sets a function to compute the right hand side vector entries for the KSP solver or nonlinear function for SNES 90247c6ae99SBarry Smith 90347c6ae99SBarry Smith Logically Collective on DM 90447c6ae99SBarry Smith 90547c6ae99SBarry Smith Input Parameter: 90647c6ae99SBarry Smith + dm - the DM object 90747c6ae99SBarry Smith - f - the function to compute (use PETSC_NULL to cancel a previous function that was set) 90847c6ae99SBarry Smith 90947c6ae99SBarry Smith Level: intermediate 91047c6ae99SBarry Smith 91147c6ae99SBarry Smith Notes: This sets both the function for function evaluations and the function used to compute Jacobians via finite differences if no Jacobian 91247c6ae99SBarry Smith computer is provided with DMSetJacobian(). Canceling cancels the function, but not the function used to compute the Jacobian. 91347c6ae99SBarry Smith 91447c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetInitialGuess(), 91547c6ae99SBarry Smith DMSetJacobian() 91647c6ae99SBarry Smith 91747c6ae99SBarry Smith @*/ 91847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetFunction(DM dm,PetscErrorCode (*f)(DM,Vec,Vec)) 91947c6ae99SBarry Smith { 92047c6ae99SBarry Smith PetscFunctionBegin; 92147c6ae99SBarry Smith dm->ops->function = f; 92247c6ae99SBarry Smith if (f) { 92347c6ae99SBarry Smith dm->ops->functionj = f; 92447c6ae99SBarry Smith } 92547c6ae99SBarry Smith PetscFunctionReturn(0); 92647c6ae99SBarry Smith } 92747c6ae99SBarry Smith 92847c6ae99SBarry Smith #undef __FUNCT__ 92947c6ae99SBarry Smith #define __FUNCT__ "DMSetJacobian" 93047c6ae99SBarry Smith /*@ 93147c6ae99SBarry Smith DMSetJacobian - sets a function to compute the matrix entries for the KSP solver or Jacobian for SNES 93247c6ae99SBarry Smith 93347c6ae99SBarry Smith Logically Collective on DM 93447c6ae99SBarry Smith 93547c6ae99SBarry Smith Input Parameter: 93647c6ae99SBarry Smith + dm - the DM object to destroy 93747c6ae99SBarry Smith - f - the function to compute the matrix entries 93847c6ae99SBarry Smith 93947c6ae99SBarry Smith Level: intermediate 94047c6ae99SBarry Smith 94147c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetInitialGuess(), 94247c6ae99SBarry Smith DMSetFunction() 94347c6ae99SBarry Smith 94447c6ae99SBarry Smith @*/ 94547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetJacobian(DM dm,PetscErrorCode (*f)(DM,Vec,Mat,Mat,MatStructure*)) 94647c6ae99SBarry Smith { 94747c6ae99SBarry Smith PetscFunctionBegin; 94847c6ae99SBarry Smith dm->ops->jacobian = f; 94947c6ae99SBarry Smith PetscFunctionReturn(0); 95047c6ae99SBarry Smith } 95147c6ae99SBarry Smith 95247c6ae99SBarry Smith #undef __FUNCT__ 95347c6ae99SBarry Smith #define __FUNCT__ "DMComputeInitialGuess" 95447c6ae99SBarry Smith /*@ 95547c6ae99SBarry Smith DMComputeInitialGuess - computes an initial guess vector entries for the KSP solvers 95647c6ae99SBarry Smith 95747c6ae99SBarry Smith Collective on DM 95847c6ae99SBarry Smith 95947c6ae99SBarry Smith Input Parameter: 96047c6ae99SBarry Smith + dm - the DM object to destroy 96147c6ae99SBarry Smith - x - the vector to hold the initial guess values 96247c6ae99SBarry Smith 96347c6ae99SBarry Smith Level: developer 96447c6ae99SBarry Smith 96547c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetRhs(), DMSetMat() 96647c6ae99SBarry Smith 96747c6ae99SBarry Smith @*/ 96847c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeInitialGuess(DM dm,Vec x) 96947c6ae99SBarry Smith { 97047c6ae99SBarry Smith PetscErrorCode ierr; 97147c6ae99SBarry Smith PetscFunctionBegin; 97247c6ae99SBarry Smith if (!dm->ops->initialguess) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_WRONGSTATE,"Need to provide function with DMSetInitialGuess()"); 97347c6ae99SBarry Smith ierr = (*dm->ops->initialguess)(dm,x);CHKERRQ(ierr); 97447c6ae99SBarry Smith PetscFunctionReturn(0); 97547c6ae99SBarry Smith } 97647c6ae99SBarry Smith 97747c6ae99SBarry Smith #undef __FUNCT__ 97847c6ae99SBarry Smith #define __FUNCT__ "DMHasInitialGuess" 97947c6ae99SBarry Smith /*@ 98047c6ae99SBarry Smith DMHasInitialGuess - does the DM object have an initial guess function 98147c6ae99SBarry Smith 98247c6ae99SBarry Smith Not Collective 98347c6ae99SBarry Smith 98447c6ae99SBarry Smith Input Parameter: 98547c6ae99SBarry Smith . dm - the DM object to destroy 98647c6ae99SBarry Smith 98747c6ae99SBarry Smith Output Parameter: 98847c6ae99SBarry Smith . flg - PETSC_TRUE if function exists 98947c6ae99SBarry Smith 99047c6ae99SBarry Smith Level: developer 99147c6ae99SBarry Smith 99247c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetFunction(), DMSetJacobian() 99347c6ae99SBarry Smith 99447c6ae99SBarry Smith @*/ 99547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMHasInitialGuess(DM dm,PetscBool *flg) 99647c6ae99SBarry Smith { 99747c6ae99SBarry Smith PetscFunctionBegin; 99847c6ae99SBarry Smith *flg = (dm->ops->initialguess) ? PETSC_TRUE : PETSC_FALSE; 99947c6ae99SBarry Smith PetscFunctionReturn(0); 100047c6ae99SBarry Smith } 100147c6ae99SBarry Smith 100247c6ae99SBarry Smith #undef __FUNCT__ 100347c6ae99SBarry Smith #define __FUNCT__ "DMHasFunction" 100447c6ae99SBarry Smith /*@ 100547c6ae99SBarry Smith DMHasFunction - does the DM object have a function 100647c6ae99SBarry Smith 100747c6ae99SBarry Smith Not Collective 100847c6ae99SBarry Smith 100947c6ae99SBarry Smith Input Parameter: 101047c6ae99SBarry Smith . dm - the DM object to destroy 101147c6ae99SBarry Smith 101247c6ae99SBarry Smith Output Parameter: 101347c6ae99SBarry Smith . flg - PETSC_TRUE if function exists 101447c6ae99SBarry Smith 101547c6ae99SBarry Smith Level: developer 101647c6ae99SBarry Smith 101747c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetFunction(), DMSetJacobian() 101847c6ae99SBarry Smith 101947c6ae99SBarry Smith @*/ 102047c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMHasFunction(DM dm,PetscBool *flg) 102147c6ae99SBarry Smith { 102247c6ae99SBarry Smith PetscFunctionBegin; 102347c6ae99SBarry Smith *flg = (dm->ops->function) ? PETSC_TRUE : PETSC_FALSE; 102447c6ae99SBarry Smith PetscFunctionReturn(0); 102547c6ae99SBarry Smith } 102647c6ae99SBarry Smith 102747c6ae99SBarry Smith #undef __FUNCT__ 102847c6ae99SBarry Smith #define __FUNCT__ "DMHasJacobian" 102947c6ae99SBarry Smith /*@ 103047c6ae99SBarry Smith DMHasJacobian - does the DM object have a matrix function 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith Not Collective 103347c6ae99SBarry Smith 103447c6ae99SBarry Smith Input Parameter: 103547c6ae99SBarry Smith . dm - the DM object to destroy 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith Output Parameter: 103847c6ae99SBarry Smith . flg - PETSC_TRUE if function exists 103947c6ae99SBarry Smith 104047c6ae99SBarry Smith Level: developer 104147c6ae99SBarry Smith 104247c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetFunction(), DMSetJacobian() 104347c6ae99SBarry Smith 104447c6ae99SBarry Smith @*/ 104547c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMHasJacobian(DM dm,PetscBool *flg) 104647c6ae99SBarry Smith { 104747c6ae99SBarry Smith PetscFunctionBegin; 104847c6ae99SBarry Smith *flg = (dm->ops->jacobian) ? PETSC_TRUE : PETSC_FALSE; 104947c6ae99SBarry Smith PetscFunctionReturn(0); 105047c6ae99SBarry Smith } 105147c6ae99SBarry Smith 105247c6ae99SBarry Smith #undef __FUNCT__ 105347c6ae99SBarry Smith #define __FUNCT__ "DMComputeFunction" 105447c6ae99SBarry Smith /*@ 105547c6ae99SBarry Smith DMComputeFunction - computes the right hand side vector entries for the KSP solver or nonlinear function for SNES 105647c6ae99SBarry Smith 105747c6ae99SBarry Smith Collective on DM 105847c6ae99SBarry Smith 105947c6ae99SBarry Smith Input Parameter: 106047c6ae99SBarry Smith + dm - the DM object to destroy 106147c6ae99SBarry Smith . x - the location where the function is evaluationed, may be ignored for linear problems 106247c6ae99SBarry Smith - b - the vector to hold the right hand side entries 106347c6ae99SBarry Smith 106447c6ae99SBarry Smith Level: developer 106547c6ae99SBarry Smith 106647c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetInitialGuess(), 106747c6ae99SBarry Smith DMSetJacobian() 106847c6ae99SBarry Smith 106947c6ae99SBarry Smith @*/ 107047c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeFunction(DM dm,Vec x,Vec b) 107147c6ae99SBarry Smith { 107247c6ae99SBarry Smith PetscErrorCode ierr; 107347c6ae99SBarry Smith PetscFunctionBegin; 107447c6ae99SBarry Smith if (!dm->ops->function) SETERRQ(((PetscObject)dm)->comm,PETSC_ERR_ARG_WRONGSTATE,"Need to provide function with DMSetFunction()"); 107547c6ae99SBarry Smith if (!x) x = dm->x; 107647c6ae99SBarry Smith ierr = (*dm->ops->function)(dm,x,b);CHKERRQ(ierr); 107747c6ae99SBarry Smith PetscFunctionReturn(0); 107847c6ae99SBarry Smith } 107947c6ae99SBarry Smith 108047c6ae99SBarry Smith 108147c6ae99SBarry Smith #undef __FUNCT__ 108247c6ae99SBarry Smith #define __FUNCT__ "DMComputeJacobian" 108347c6ae99SBarry Smith /*@ 108447c6ae99SBarry Smith DMComputeJacobian - compute the matrix entries for the solver 108547c6ae99SBarry Smith 108647c6ae99SBarry Smith Collective on DM 108747c6ae99SBarry Smith 108847c6ae99SBarry Smith Input Parameter: 108947c6ae99SBarry Smith + dm - the DM object 109047c6ae99SBarry Smith . x - location to compute Jacobian at; may be ignored for linear problems 109147c6ae99SBarry Smith . A - matrix that defines the operator for the linear solve 109247c6ae99SBarry Smith - B - the matrix used to construct the preconditioner 109347c6ae99SBarry Smith 109447c6ae99SBarry Smith Level: developer 109547c6ae99SBarry Smith 109647c6ae99SBarry Smith .seealso DMView(), DMCreateGlobalVector(), DMGetInterpolation(), DMGetColoring(), DMGetMatrix(), DMGetContext(), DMSetInitialGuess(), 109747c6ae99SBarry Smith DMSetFunction() 109847c6ae99SBarry Smith 109947c6ae99SBarry Smith @*/ 110047c6ae99SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeJacobian(DM dm,Vec x,Mat A,Mat B,MatStructure *stflag) 110147c6ae99SBarry Smith { 110247c6ae99SBarry Smith PetscErrorCode ierr; 110347c6ae99SBarry Smith 110447c6ae99SBarry Smith PetscFunctionBegin; 110547c6ae99SBarry Smith if (!dm->ops->jacobian) { 110647c6ae99SBarry Smith ISColoring coloring; 110747c6ae99SBarry Smith MatFDColoring fd; 110847c6ae99SBarry Smith 110947c6ae99SBarry Smith ierr = DMGetColoring(dm,IS_COLORING_GHOSTED,MATAIJ,&coloring);CHKERRQ(ierr); 111047c6ae99SBarry Smith ierr = MatFDColoringCreate(B,coloring,&fd);CHKERRQ(ierr); 111147c6ae99SBarry Smith ierr = ISColoringDestroy(coloring);CHKERRQ(ierr); 111247c6ae99SBarry Smith ierr = MatFDColoringSetFunction(fd,(PetscErrorCode (*)(void))dm->ops->functionj,dm);CHKERRQ(ierr); 111347c6ae99SBarry Smith dm->fd = fd; 111447c6ae99SBarry Smith dm->ops->jacobian = DMComputeJacobianDefault; 111547c6ae99SBarry Smith 111647c6ae99SBarry Smith if (!dm->x) { 111747c6ae99SBarry Smith ierr = MatGetVecs(B,&dm->x,PETSC_NULL);CHKERRQ(ierr); 111847c6ae99SBarry Smith } 111947c6ae99SBarry Smith } 112047c6ae99SBarry Smith if (!x) x = dm->x; 112147c6ae99SBarry Smith ierr = (*dm->ops->jacobian)(dm,x,A,B,stflag);CHKERRQ(ierr); 112247c6ae99SBarry Smith PetscFunctionReturn(0); 112347c6ae99SBarry Smith } 1124264ace61SBarry Smith 1125264ace61SBarry Smith PetscFList DMList = PETSC_NULL; 1126264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 1127264ace61SBarry Smith 1128264ace61SBarry Smith #undef __FUNCT__ 1129264ace61SBarry Smith #define __FUNCT__ "DMSetType" 1130264ace61SBarry Smith /*@C 1131264ace61SBarry Smith DMSetType - Builds a DM, for a particular DM implementation. 1132264ace61SBarry Smith 1133264ace61SBarry Smith Collective on DM 1134264ace61SBarry Smith 1135264ace61SBarry Smith Input Parameters: 1136264ace61SBarry Smith + dm - The DM object 1137264ace61SBarry Smith - method - The name of the DM type 1138264ace61SBarry Smith 1139264ace61SBarry Smith Options Database Key: 1140264ace61SBarry Smith . -dm_type <type> - Sets the DM type; use -help for a list of available types 1141264ace61SBarry Smith 1142264ace61SBarry Smith Notes: 1143e1589f56SBarry Smith See "petsc/include/petscdm.h" for available DM types (for instance, DM1D, DM2D, or DM3D). 1144264ace61SBarry Smith 1145264ace61SBarry Smith Level: intermediate 1146264ace61SBarry Smith 1147264ace61SBarry Smith .keywords: DM, set, type 1148264ace61SBarry Smith .seealso: DMGetType(), DMCreate() 1149264ace61SBarry Smith @*/ 1150264ace61SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetType(DM dm, const DMType method) 1151264ace61SBarry Smith { 1152264ace61SBarry Smith PetscErrorCode (*r)(DM); 1153264ace61SBarry Smith PetscBool match; 1154264ace61SBarry Smith PetscErrorCode ierr; 1155264ace61SBarry Smith 1156264ace61SBarry Smith PetscFunctionBegin; 1157264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID,1); 1158264ace61SBarry Smith ierr = PetscTypeCompare((PetscObject) dm, method, &match);CHKERRQ(ierr); 1159264ace61SBarry Smith if (match) PetscFunctionReturn(0); 1160264ace61SBarry Smith 1161264ace61SBarry Smith if (!DMRegisterAllCalled) {ierr = DMRegisterAll(PETSC_NULL);CHKERRQ(ierr);} 1162264ace61SBarry Smith ierr = PetscFListFind(DMList, ((PetscObject)dm)->comm, method,(void (**)(void)) &r);CHKERRQ(ierr); 1163264ace61SBarry Smith if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 1164264ace61SBarry Smith 1165264ace61SBarry Smith if (dm->ops->destroy) { 1166264ace61SBarry Smith ierr = (*dm->ops->destroy)(dm);CHKERRQ(ierr); 1167264ace61SBarry Smith } 1168264ace61SBarry Smith ierr = (*r)(dm);CHKERRQ(ierr); 1169264ace61SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)dm,method);CHKERRQ(ierr); 1170264ace61SBarry Smith PetscFunctionReturn(0); 1171264ace61SBarry Smith } 1172264ace61SBarry Smith 1173264ace61SBarry Smith #undef __FUNCT__ 1174264ace61SBarry Smith #define __FUNCT__ "DMGetType" 1175264ace61SBarry Smith /*@C 1176264ace61SBarry Smith DMGetType - Gets the DM type name (as a string) from the DM. 1177264ace61SBarry Smith 1178264ace61SBarry Smith Not Collective 1179264ace61SBarry Smith 1180264ace61SBarry Smith Input Parameter: 1181264ace61SBarry Smith . dm - The DM 1182264ace61SBarry Smith 1183264ace61SBarry Smith Output Parameter: 1184264ace61SBarry Smith . type - The DM type name 1185264ace61SBarry Smith 1186264ace61SBarry Smith Level: intermediate 1187264ace61SBarry Smith 1188264ace61SBarry Smith .keywords: DM, get, type, name 1189264ace61SBarry Smith .seealso: DMSetType(), DMCreate() 1190264ace61SBarry Smith @*/ 1191264ace61SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMGetType(DM dm, const DMType *type) 1192264ace61SBarry Smith { 1193264ace61SBarry Smith PetscErrorCode ierr; 1194264ace61SBarry Smith 1195264ace61SBarry Smith PetscFunctionBegin; 1196264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID,1); 1197264ace61SBarry Smith PetscValidCharPointer(type,2); 1198264ace61SBarry Smith if (!DMRegisterAllCalled) { 1199264ace61SBarry Smith ierr = DMRegisterAll(PETSC_NULL);CHKERRQ(ierr); 1200264ace61SBarry Smith } 1201264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 1202264ace61SBarry Smith PetscFunctionReturn(0); 1203264ace61SBarry Smith } 1204264ace61SBarry Smith 1205264ace61SBarry Smith 1206264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 1207264ace61SBarry Smith 1208264ace61SBarry Smith #undef __FUNCT__ 1209264ace61SBarry Smith #define __FUNCT__ "DMRegister" 1210264ace61SBarry Smith /*@C 1211264ace61SBarry Smith DMRegister - See DMRegisterDynamic() 1212264ace61SBarry Smith 1213264ace61SBarry Smith Level: advanced 1214264ace61SBarry Smith @*/ 1215264ace61SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMRegister(const char sname[], const char path[], const char name[], PetscErrorCode (*function)(DM)) 1216264ace61SBarry Smith { 1217264ace61SBarry Smith char fullname[PETSC_MAX_PATH_LEN]; 1218264ace61SBarry Smith PetscErrorCode ierr; 1219264ace61SBarry Smith 1220264ace61SBarry Smith PetscFunctionBegin; 1221264ace61SBarry Smith ierr = PetscStrcpy(fullname, path);CHKERRQ(ierr); 1222264ace61SBarry Smith ierr = PetscStrcat(fullname, ":");CHKERRQ(ierr); 1223264ace61SBarry Smith ierr = PetscStrcat(fullname, name);CHKERRQ(ierr); 1224264ace61SBarry Smith ierr = PetscFListAdd(&DMList, sname, fullname, (void (*)(void)) function);CHKERRQ(ierr); 1225264ace61SBarry Smith PetscFunctionReturn(0); 1226264ace61SBarry Smith } 1227264ace61SBarry Smith 1228264ace61SBarry Smith 1229264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 1230264ace61SBarry Smith #undef __FUNCT__ 1231264ace61SBarry Smith #define __FUNCT__ "DMRegisterDestroy" 1232264ace61SBarry Smith /*@C 1233264ace61SBarry Smith DMRegisterDestroy - Frees the list of DM methods that were registered by DMRegister()/DMRegisterDynamic(). 1234264ace61SBarry Smith 1235264ace61SBarry Smith Not Collective 1236264ace61SBarry Smith 1237264ace61SBarry Smith Level: advanced 1238264ace61SBarry Smith 1239264ace61SBarry Smith .keywords: DM, register, destroy 1240264ace61SBarry Smith .seealso: DMRegister(), DMRegisterAll(), DMRegisterDynamic() 1241264ace61SBarry Smith @*/ 1242264ace61SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMRegisterDestroy(void) 1243264ace61SBarry Smith { 1244264ace61SBarry Smith PetscErrorCode ierr; 1245264ace61SBarry Smith 1246264ace61SBarry Smith PetscFunctionBegin; 1247264ace61SBarry Smith ierr = PetscFListDestroy(&DMList);CHKERRQ(ierr); 1248264ace61SBarry Smith DMRegisterAllCalled = PETSC_FALSE; 1249264ace61SBarry Smith PetscFunctionReturn(0); 1250264ace61SBarry Smith } 125123f975d1SBarry Smith 125223f975d1SBarry Smith #if defined(PETSC_HAVE_MATLAB_ENGINE) 125323f975d1SBarry Smith #include "mex.h" 125423f975d1SBarry Smith 12553014e516SBarry Smith typedef struct {char *funcname; char *jacname; mxArray *ctx;} DMMatlabContext; 125623f975d1SBarry Smith 125723f975d1SBarry Smith #undef __FUNCT__ 125823f975d1SBarry Smith #define __FUNCT__ "DMComputeFunction_Matlab" 125923f975d1SBarry Smith /* 126023f975d1SBarry Smith DMComputeFunction_Matlab - Calls the function that has been set with 126123f975d1SBarry Smith DMSetFunctionMatlab(). 126223f975d1SBarry Smith 126323f975d1SBarry Smith For linear problems x is null 126423f975d1SBarry Smith 126523f975d1SBarry Smith .seealso: DMSetFunction(), DMGetFunction() 126623f975d1SBarry Smith */ 126723f975d1SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeFunction_Matlab(DM dm,Vec x,Vec y) 126823f975d1SBarry Smith { 126923f975d1SBarry Smith PetscErrorCode ierr; 127023f975d1SBarry Smith DMMatlabContext *sctx; 127123f975d1SBarry Smith int nlhs = 1,nrhs = 4; 127223f975d1SBarry Smith mxArray *plhs[1],*prhs[4]; 127323f975d1SBarry Smith long long int lx = 0,ly = 0,ls = 0; 127423f975d1SBarry Smith 127523f975d1SBarry Smith PetscFunctionBegin; 127623f975d1SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 127723f975d1SBarry Smith PetscValidHeaderSpecific(y,VEC_CLASSID,3); 127823f975d1SBarry Smith PetscCheckSameComm(dm,1,y,3); 127923f975d1SBarry Smith 128023f975d1SBarry Smith /* call Matlab function in ctx with arguments x and y */ 128123f975d1SBarry Smith ierr = DMGetContext(dm,(void**)&sctx);CHKERRQ(ierr); 128223f975d1SBarry Smith ierr = PetscMemcpy(&ls,&dm,sizeof(dm));CHKERRQ(ierr); 128323f975d1SBarry Smith ierr = PetscMemcpy(&lx,&x,sizeof(x));CHKERRQ(ierr); 12843014e516SBarry Smith ierr = PetscMemcpy(&ly,&y,sizeof(y));CHKERRQ(ierr); 128523f975d1SBarry Smith prhs[0] = mxCreateDoubleScalar((double)ls); 128623f975d1SBarry Smith prhs[1] = mxCreateDoubleScalar((double)lx); 128723f975d1SBarry Smith prhs[2] = mxCreateDoubleScalar((double)ly); 128823f975d1SBarry Smith prhs[3] = mxCreateString(sctx->funcname); 1289b807a863SBarry Smith ierr = mexCallMATLAB(nlhs,plhs,nrhs,prhs,"PetscDMComputeFunctionInternal");CHKERRQ(ierr); 129023f975d1SBarry Smith ierr = mxGetScalar(plhs[0]);CHKERRQ(ierr); 129123f975d1SBarry Smith mxDestroyArray(prhs[0]); 129223f975d1SBarry Smith mxDestroyArray(prhs[1]); 129323f975d1SBarry Smith mxDestroyArray(prhs[2]); 129423f975d1SBarry Smith mxDestroyArray(prhs[3]); 129523f975d1SBarry Smith mxDestroyArray(plhs[0]); 129623f975d1SBarry Smith PetscFunctionReturn(0); 129723f975d1SBarry Smith } 129823f975d1SBarry Smith 129923f975d1SBarry Smith 130023f975d1SBarry Smith #undef __FUNCT__ 130123f975d1SBarry Smith #define __FUNCT__ "DMSetFunctionMatlab" 130223f975d1SBarry Smith /* 130323f975d1SBarry Smith DMSetFunctionMatlab - Sets the function evaluation routine 130423f975d1SBarry Smith 130523f975d1SBarry Smith */ 130623f975d1SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetFunctionMatlab(DM dm,const char *func) 130723f975d1SBarry Smith { 130823f975d1SBarry Smith PetscErrorCode ierr; 130923f975d1SBarry Smith DMMatlabContext *sctx; 131023f975d1SBarry Smith 131123f975d1SBarry Smith PetscFunctionBegin; 131223f975d1SBarry Smith /* currently sctx is memory bleed */ 13133014e516SBarry Smith ierr = DMGetContext(dm,(void**)&sctx);CHKERRQ(ierr); 13143014e516SBarry Smith if (!sctx) { 131523f975d1SBarry Smith ierr = PetscMalloc(sizeof(DMMatlabContext),&sctx);CHKERRQ(ierr); 13163014e516SBarry Smith } 131723f975d1SBarry Smith ierr = PetscStrallocpy(func,&sctx->funcname);CHKERRQ(ierr); 131823f975d1SBarry Smith ierr = DMSetContext(dm,sctx);CHKERRQ(ierr); 131923f975d1SBarry Smith ierr = DMSetFunction(dm,DMComputeFunction_Matlab);CHKERRQ(ierr); 132023f975d1SBarry Smith PetscFunctionReturn(0); 132123f975d1SBarry Smith } 13223014e516SBarry Smith 13233014e516SBarry Smith #undef __FUNCT__ 13243014e516SBarry Smith #define __FUNCT__ "DMComputeJacobian_Matlab" 13253014e516SBarry Smith /* 13263014e516SBarry Smith DMComputeJacobian_Matlab - Calls the function that has been set with 13273014e516SBarry Smith DMSetJacobianMatlab(). 13283014e516SBarry Smith 13293014e516SBarry Smith For linear problems x is null 13303014e516SBarry Smith 13313014e516SBarry Smith .seealso: DMSetFunction(), DMGetFunction() 13323014e516SBarry Smith */ 13333014e516SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMComputeJacobian_Matlab(DM dm,Vec x,Mat A,Mat B,MatStructure *str) 13343014e516SBarry Smith { 13353014e516SBarry Smith PetscErrorCode ierr; 13363014e516SBarry Smith DMMatlabContext *sctx; 13373014e516SBarry Smith int nlhs = 2,nrhs = 5; 13383014e516SBarry Smith mxArray *plhs[2],*prhs[5]; 13393014e516SBarry Smith long long int lx = 0,lA = 0,lB = 0,ls = 0; 13403014e516SBarry Smith 13413014e516SBarry Smith PetscFunctionBegin; 13423014e516SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 13433014e516SBarry Smith PetscValidHeaderSpecific(A,MAT_CLASSID,3); 13443014e516SBarry Smith 13453014e516SBarry Smith /* call Matlab function in ctx with arguments x, A, and B */ 13463014e516SBarry Smith ierr = DMGetContext(dm,(void**)&sctx);CHKERRQ(ierr); 13473014e516SBarry Smith ierr = PetscMemcpy(&ls,&dm,sizeof(dm));CHKERRQ(ierr); 13483014e516SBarry Smith ierr = PetscMemcpy(&lx,&x,sizeof(x));CHKERRQ(ierr); 13493014e516SBarry Smith ierr = PetscMemcpy(&lA,&A,sizeof(A));CHKERRQ(ierr); 13503014e516SBarry Smith ierr = PetscMemcpy(&lB,&B,sizeof(B));CHKERRQ(ierr); 13513014e516SBarry Smith prhs[0] = mxCreateDoubleScalar((double)ls); 13523014e516SBarry Smith prhs[1] = mxCreateDoubleScalar((double)lx); 13533014e516SBarry Smith prhs[2] = mxCreateDoubleScalar((double)lA); 13543014e516SBarry Smith prhs[3] = mxCreateDoubleScalar((double)lB); 13553014e516SBarry Smith prhs[4] = mxCreateString(sctx->jacname); 1356b807a863SBarry Smith ierr = mexCallMATLAB(nlhs,plhs,nrhs,prhs,"PetscDMComputeJacobianInternal");CHKERRQ(ierr); 13573014e516SBarry Smith *str = mxGetScalar(plhs[0]);CHKERRQ(ierr); 13583014e516SBarry Smith ierr = mxGetScalar(plhs[1]);CHKERRQ(ierr); 13593014e516SBarry Smith mxDestroyArray(prhs[0]); 13603014e516SBarry Smith mxDestroyArray(prhs[1]); 13613014e516SBarry Smith mxDestroyArray(prhs[2]); 13623014e516SBarry Smith mxDestroyArray(prhs[3]); 13633014e516SBarry Smith mxDestroyArray(prhs[4]); 13643014e516SBarry Smith mxDestroyArray(plhs[0]); 13653014e516SBarry Smith mxDestroyArray(plhs[1]); 13663014e516SBarry Smith PetscFunctionReturn(0); 13673014e516SBarry Smith } 13683014e516SBarry Smith 13693014e516SBarry Smith 13703014e516SBarry Smith #undef __FUNCT__ 13713014e516SBarry Smith #define __FUNCT__ "DMSetJacobianMatlab" 13723014e516SBarry Smith /* 13733014e516SBarry Smith DMSetJacobianMatlab - Sets the Jacobian function evaluation routine 13743014e516SBarry Smith 13753014e516SBarry Smith */ 13763014e516SBarry Smith PetscErrorCode PETSCDM_DLLEXPORT DMSetJacobianMatlab(DM dm,const char *func) 13773014e516SBarry Smith { 13783014e516SBarry Smith PetscErrorCode ierr; 13793014e516SBarry Smith DMMatlabContext *sctx; 13803014e516SBarry Smith 13813014e516SBarry Smith PetscFunctionBegin; 13823014e516SBarry Smith /* currently sctx is memory bleed */ 13833014e516SBarry Smith ierr = DMGetContext(dm,(void**)&sctx);CHKERRQ(ierr); 13843014e516SBarry Smith if (!sctx) { 13853014e516SBarry Smith ierr = PetscMalloc(sizeof(DMMatlabContext),&sctx);CHKERRQ(ierr); 13863014e516SBarry Smith } 13873014e516SBarry Smith ierr = PetscStrallocpy(func,&sctx->jacname);CHKERRQ(ierr); 13883014e516SBarry Smith ierr = DMSetContext(dm,sctx);CHKERRQ(ierr); 13893014e516SBarry Smith ierr = DMSetJacobian(dm,DMComputeJacobian_Matlab);CHKERRQ(ierr); 13903014e516SBarry Smith PetscFunctionReturn(0); 13913014e516SBarry Smith } 139223f975d1SBarry Smith #endif 1393