1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 17*42d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 210e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 23476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 24476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2660c22052SBarry Smith 27a4121054SBarry Smith /*@ 28bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 29bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 30a4121054SBarry Smith 31d083f849SBarry Smith Collective 32a4121054SBarry Smith 33a4121054SBarry Smith Input Parameter: 34bb7acecfSBarry Smith . comm - The communicator for the `DM` object 35a4121054SBarry Smith 36a4121054SBarry Smith Output Parameter: 37bb7acecfSBarry Smith . dm - The `DM` object 38a4121054SBarry Smith 39a4121054SBarry Smith Level: beginner 40a4121054SBarry Smith 41bb7acecfSBarry Smith Notes: 42bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 43bb7acecfSBarry Smith 44bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 45bb7acecfSBarry Smith error when you try to use the dm. 46bb7acecfSBarry Smith 471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 48a4121054SBarry Smith @*/ 49d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 50d71ae5a4SJacob Faibussowitsch { 51a4121054SBarry Smith DM v; 52e5e52638SMatthew G. Knepley PetscDS ds; 53a4121054SBarry Smith 54a4121054SBarry Smith PetscFunctionBegin; 554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 56377f809aSBarry Smith 579566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 589566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 5962e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6049be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6149be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 620298fd71SBarry Smith v->ltogmap = NULL; 63a4ea9b21SRichard Tran Mills v->bind_below = 0; 641411c6eeSJed Brown v->bs = 1; 65171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 669566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 68c58f1c22SToby Isaac v->labels = NULL; 6934aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7034aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 71c58f1c22SToby Isaac v->depthLabel = NULL; 72ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 731bb6d2a8SBarry Smith v->localSection = NULL; 741bb6d2a8SBarry Smith v->globalSection = NULL; 753b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 763b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 7779769bd5SJed Brown v->defaultConstraint.bias = NULL; 786858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 796858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 806858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8196173672SStefano Zampini v->dim = PETSC_DETERMINE; 82435a35e8SMatthew G Knepley { 83435a35e8SMatthew G Knepley PetscInt i; 84435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 850298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 86f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 87435a35e8SMatthew G Knepley } 88435a35e8SMatthew G Knepley } 899566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 919566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 929566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9314f150ffSMatthew G. Knepley v->dmBC = NULL; 94a8fb8f29SToby Isaac v->coarseMesh = NULL; 95f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 96cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 979566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 989566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 994a7a4c06SLawrence Mitchell 1001411c6eeSJed Brown *dm = v; 1013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102a4121054SBarry Smith } 103a4121054SBarry Smith 10438221697SMatthew G. Knepley /*@ 105bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10638221697SMatthew G. Knepley 107d083f849SBarry Smith Collective 10838221697SMatthew G. Knepley 10938221697SMatthew G. Knepley Input Parameter: 110bb7acecfSBarry Smith . dm - The original `DM` object 11138221697SMatthew G. Knepley 11238221697SMatthew G. Knepley Output Parameter: 113bb7acecfSBarry Smith . newdm - The new `DM` object 11438221697SMatthew G. Knepley 11538221697SMatthew G. Knepley Level: beginner 11638221697SMatthew G. Knepley 1171cb8cacdSPatrick Sanan Notes: 118bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 119bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 120bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1211bb6d2a8SBarry Smith 122bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12389706ed2SPatrick Sanan 124bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 125bb7acecfSBarry Smith 12660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 12738221697SMatthew G. Knepley @*/ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 129d71ae5a4SJacob Faibussowitsch { 13038221697SMatthew G. Knepley PetscSF sf; 13138221697SMatthew G. Knepley Vec coords; 13238221697SMatthew G. Knepley void *ctx; 133ec196627SMatthew G. Knepley MatOrderingType otype; 134ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1356858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13638221697SMatthew G. Knepley 13738221697SMatthew G. Knepley PetscFunctionBegin; 13838221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1394f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1409566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1419566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 142ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 143ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 144c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 145fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1469566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1479566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1509566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1519566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 152dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1533f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1549566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1559566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1569566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 158ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 159ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 160ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 161ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1626858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1636858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 164be4c1c3eSMatthew G. Knepley DM ncdm; 165be4c1c3eSMatthew G. Knepley PetscSection cs; 1665a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 167be4c1c3eSMatthew G. Knepley 1686858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1699566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 170462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1715a0206caSToby Isaac if (pEndMax >= 0) { 1726858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1736858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1749566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1755e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1765e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1775e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1785e50ca95SJames Wright } 1796858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1806858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 182be4c1c3eSMatthew G. Knepley } 183be4c1c3eSMatthew G. Knepley } 1846858538eSMatthew G. Knepley } 1859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1869566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18838221697SMatthew G. Knepley if (coords) { 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19038221697SMatthew G. Knepley } else { 1919566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1929566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19338221697SMatthew G. Knepley } 1946858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1956858538eSMatthew G. Knepley if (coords) { 1966858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1976858538eSMatthew G. Knepley } else { 1986858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1996858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2006858538eSMatthew G. Knepley } 20190b157c4SStefano Zampini { 2024fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2036858538eSMatthew G. Knepley 2044fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2054fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 206c6b900c6SMatthew G. Knepley } 20734aa8a36SMatthew G. Knepley { 20834aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20934aa8a36SMatthew G. Knepley 2109566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2119566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21234aa8a36SMatthew G. Knepley } 2133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21438221697SMatthew G. Knepley } 21538221697SMatthew G. Knepley 2165d83a8b1SBarry Smith /*@ 2175d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2189a42bb27SBarry Smith 21920f4b53cSBarry Smith Logically Collective 2209a42bb27SBarry Smith 221147403d9SBarry Smith Input Parameters: 22232546409SMatthew G. Knepley + dm - initial distributed array 223bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2249a42bb27SBarry Smith 22520f4b53cSBarry Smith Options Database Key: 226147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2279a42bb27SBarry Smith 2289a42bb27SBarry Smith Level: intermediate 2299a42bb27SBarry Smith 23060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 231bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2329a42bb27SBarry Smith @*/ 23332546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 234d71ae5a4SJacob Faibussowitsch { 23532546409SMatthew G. Knepley char *tmp; 23632546409SMatthew G. Knepley 2379a42bb27SBarry Smith PetscFunctionBegin; 23832546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23932546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24032546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24132546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24232546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2449a42bb27SBarry Smith } 2459a42bb27SBarry Smith 2465d83a8b1SBarry Smith /*@ 247bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 248c0dedaeaSBarry Smith 24920f4b53cSBarry Smith Logically Collective 250c0dedaeaSBarry Smith 251c0dedaeaSBarry Smith Input Parameter: 252c0dedaeaSBarry Smith . da - initial distributed array 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Output Parameter: 255c0dedaeaSBarry Smith . ctype - the vector type 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Level: intermediate 258c0dedaeaSBarry Smith 25960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 260c0dedaeaSBarry Smith @*/ 261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 262d71ae5a4SJacob Faibussowitsch { 263c0dedaeaSBarry Smith PetscFunctionBegin; 264c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 265c0dedaeaSBarry Smith *ctype = da->vectype; 2663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 267c0dedaeaSBarry Smith } 268c0dedaeaSBarry Smith 2695f1ad066SMatthew G Knepley /*@ 270bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2715f1ad066SMatthew G Knepley 27220f4b53cSBarry Smith Not Collective 2735f1ad066SMatthew G Knepley 2745f1ad066SMatthew G Knepley Input Parameter: 275bb7acecfSBarry Smith . v - The `Vec` 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Output Parameter: 278bb7acecfSBarry Smith . dm - The `DM` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Level: intermediate 2815f1ad066SMatthew G Knepley 282bb7acecfSBarry Smith Note: 283bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 284bb7acecfSBarry Smith 2851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2865f1ad066SMatthew G Knepley @*/ 287d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 288d71ae5a4SJacob Faibussowitsch { 2895f1ad066SMatthew G Knepley PetscFunctionBegin; 2905f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2914f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2945f1ad066SMatthew G Knepley } 2955f1ad066SMatthew G Knepley 2965f1ad066SMatthew G Knepley /*@ 297bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2985f1ad066SMatthew G Knepley 29920f4b53cSBarry Smith Not Collective 3005f1ad066SMatthew G Knepley 3015f1ad066SMatthew G Knepley Input Parameters: 302bb7acecfSBarry Smith + v - The `Vec` 303bb7acecfSBarry Smith - dm - The `DM` 3045f1ad066SMatthew G Knepley 30520f4b53cSBarry Smith Level: developer 30620f4b53cSBarry Smith 30773ff1848SBarry Smith Notes: 308bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 309d9805387SMatthew G. Knepley 310bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 311bb7acecfSBarry Smith 3121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3135f1ad066SMatthew G Knepley @*/ 314d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 315d71ae5a4SJacob Faibussowitsch { 3165f1ad066SMatthew G Knepley PetscFunctionBegin; 3175f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 318d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3199566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3215f1ad066SMatthew G Knepley } 3225f1ad066SMatthew G Knepley 323cc4c1da9SBarry Smith /*@ 324bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3258f1509bcSBarry Smith 32620f4b53cSBarry Smith Logically Collective 3278f1509bcSBarry Smith 3288f1509bcSBarry Smith Input Parameters: 329bb7acecfSBarry Smith + dm - the `DM` context 3308f1509bcSBarry Smith - ctype - the matrix type 3318f1509bcSBarry Smith 33220f4b53cSBarry Smith Options Database Key: 3338f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3348f1509bcSBarry Smith 3358f1509bcSBarry Smith Level: intermediate 3368f1509bcSBarry Smith 3371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 338bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3398f1509bcSBarry Smith @*/ 340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 341d71ae5a4SJacob Faibussowitsch { 3428f1509bcSBarry Smith PetscFunctionBegin; 3438f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3448f1509bcSBarry Smith dm->coloringtype = ctype; 3453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3468f1509bcSBarry Smith } 3478f1509bcSBarry Smith 348cc4c1da9SBarry Smith /*@ 349bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 350521d9a4cSLisandro Dalcin 35120f4b53cSBarry Smith Logically Collective 352521d9a4cSLisandro Dalcin 353521d9a4cSLisandro Dalcin Input Parameter: 354bb7acecfSBarry Smith . dm - the `DM` context 3558f1509bcSBarry Smith 3568f1509bcSBarry Smith Output Parameter: 3578f1509bcSBarry Smith . ctype - the matrix type 3588f1509bcSBarry Smith 35920f4b53cSBarry Smith Options Database Key: 3608f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3618f1509bcSBarry Smith 3628f1509bcSBarry Smith Level: intermediate 3638f1509bcSBarry Smith 3641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36542747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3668f1509bcSBarry Smith @*/ 367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 368d71ae5a4SJacob Faibussowitsch { 3698f1509bcSBarry Smith PetscFunctionBegin; 3708f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3718f1509bcSBarry Smith *ctype = dm->coloringtype; 3723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3738f1509bcSBarry Smith } 3748f1509bcSBarry Smith 375cc4c1da9SBarry Smith /*@ 376bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3778f1509bcSBarry Smith 37820f4b53cSBarry Smith Logically Collective 3798f1509bcSBarry Smith 3808f1509bcSBarry Smith Input Parameters: 381bb7acecfSBarry Smith + dm - the `DM` context 382bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 383521d9a4cSLisandro Dalcin 38420f4b53cSBarry Smith Options Database Key: 385bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 386521d9a4cSLisandro Dalcin 387521d9a4cSLisandro Dalcin Level: intermediate 388521d9a4cSLisandro Dalcin 38942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 390521d9a4cSLisandro Dalcin @*/ 391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 392d71ae5a4SJacob Faibussowitsch { 39332546409SMatthew G. Knepley char *tmp; 39432546409SMatthew G. Knepley 395521d9a4cSLisandro Dalcin PetscFunctionBegin; 396521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39732546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 39832546409SMatthew G. Knepley tmp = (char *)dm->mattype; 3999566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40032546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 402521d9a4cSLisandro Dalcin } 403521d9a4cSLisandro Dalcin 404cc4c1da9SBarry Smith /*@ 40520f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 406c0dedaeaSBarry Smith 40720f4b53cSBarry Smith Logically Collective 408c0dedaeaSBarry Smith 409c0dedaeaSBarry Smith Input Parameter: 410bb7acecfSBarry Smith . dm - the `DM` context 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Output Parameter: 413c0dedaeaSBarry Smith . ctype - the matrix type 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Level: intermediate 416c0dedaeaSBarry Smith 41742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 418c0dedaeaSBarry Smith @*/ 419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 420d71ae5a4SJacob Faibussowitsch { 421c0dedaeaSBarry Smith PetscFunctionBegin; 422c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 423c0dedaeaSBarry Smith *ctype = dm->mattype; 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 425c0dedaeaSBarry Smith } 426c0dedaeaSBarry Smith 427c688c046SMatthew G Knepley /*@ 428bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 429c688c046SMatthew G Knepley 43020f4b53cSBarry Smith Not Collective 431c688c046SMatthew G Knepley 432c688c046SMatthew G Knepley Input Parameter: 433bb7acecfSBarry Smith . A - The `Mat` 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Output Parameter: 436bb7acecfSBarry Smith . dm - The `DM` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Level: intermediate 439c688c046SMatthew G Knepley 440bb7acecfSBarry Smith Note: 441bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 442bb7acecfSBarry Smith 44373ff1848SBarry Smith Developer Note: 444bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4458f1509bcSBarry Smith 4461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 447c688c046SMatthew G Knepley @*/ 448d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 449d71ae5a4SJacob Faibussowitsch { 450c688c046SMatthew G Knepley PetscFunctionBegin; 451c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4524f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4539566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 455c688c046SMatthew G Knepley } 456c688c046SMatthew G Knepley 457c688c046SMatthew G Knepley /*@ 458bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 459c688c046SMatthew G Knepley 46020f4b53cSBarry Smith Not Collective 461c688c046SMatthew G Knepley 462c688c046SMatthew G Knepley Input Parameters: 46320f4b53cSBarry Smith + A - The `Mat` 46420f4b53cSBarry Smith - dm - The `DM` 465c688c046SMatthew G Knepley 466bb7acecfSBarry Smith Level: developer 467c688c046SMatthew G Knepley 468bb7acecfSBarry Smith Note: 469bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 470bb7acecfSBarry Smith 47173ff1848SBarry Smith Developer Note: 472bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 473bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4748f1509bcSBarry Smith 4751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 476c688c046SMatthew G Knepley @*/ 477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 478d71ae5a4SJacob Faibussowitsch { 479c688c046SMatthew G Knepley PetscFunctionBegin; 480c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4818865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4829566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484c688c046SMatthew G Knepley } 485c688c046SMatthew G Knepley 486cc4c1da9SBarry Smith /*@ 487bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4889a42bb27SBarry Smith 48920f4b53cSBarry Smith Logically Collective 4909a42bb27SBarry Smith 491d8d19677SJose E. Roman Input Parameters: 49260225df5SJacob Faibussowitsch + dm - the `DM` context 493bb7acecfSBarry Smith - prefix - the prefix to prepend 4949a42bb27SBarry Smith 49520f4b53cSBarry Smith Level: advanced 49620f4b53cSBarry Smith 49720f4b53cSBarry Smith Note: 4989a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4999a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5009a42bb27SBarry Smith 5011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5029a42bb27SBarry Smith @*/ 503d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 504d71ae5a4SJacob Faibussowitsch { 5059a42bb27SBarry Smith PetscFunctionBegin; 5069a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5081baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5091baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5119a42bb27SBarry Smith } 5129a42bb27SBarry Smith 513cc4c1da9SBarry Smith /*@ 514da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 515bb7acecfSBarry Smith `DM` options in the options database. 51631697293SDave May 51720f4b53cSBarry Smith Logically Collective 51831697293SDave May 51931697293SDave May Input Parameters: 520bb7acecfSBarry Smith + dm - the `DM` context 521bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52231697293SDave May 52320f4b53cSBarry Smith Level: advanced 52420f4b53cSBarry Smith 52520f4b53cSBarry Smith Note: 526bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 52731697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 52831697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 52931697293SDave May 5301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53131697293SDave May @*/ 532d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 533d71ae5a4SJacob Faibussowitsch { 53431697293SDave May PetscFunctionBegin; 53531697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5369566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53831697293SDave May } 53931697293SDave May 540cc4c1da9SBarry Smith /*@ 54131697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 542bb7acecfSBarry Smith DM options in the options database. 54331697293SDave May 54431697293SDave May Not Collective 54531697293SDave May 5462fe279fdSBarry Smith Input Parameter: 547bb7acecfSBarry Smith . dm - the `DM` context 54831697293SDave May 5492fe279fdSBarry Smith Output Parameter: 55031697293SDave May . prefix - pointer to the prefix string used is returned 55131697293SDave May 55231697293SDave May Level: advanced 55331697293SDave May 55473ff1848SBarry Smith Fortran Note: 55520f4b53cSBarry Smith Pass in a string 'prefix' of 55620f4b53cSBarry Smith sufficient length to hold the prefix. 55720f4b53cSBarry Smith 5581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 55931697293SDave May @*/ 560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 561d71ae5a4SJacob Faibussowitsch { 56231697293SDave May PetscFunctionBegin; 56331697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56631697293SDave May } 56731697293SDave May 56862e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 569d71ae5a4SJacob Faibussowitsch { 5706eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57188bdff64SToby Isaac 57288bdff64SToby Isaac PetscFunctionBegin; 573aab5bcd8SJed Brown *ncrefct = 0; 57488bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57588bdff64SToby Isaac refct--; 57688bdff64SToby Isaac if (recurseCoarse) { 57788bdff64SToby Isaac PetscInt coarseCount; 57888bdff64SToby Isaac 57962e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58088bdff64SToby Isaac refct += coarseCount; 58188bdff64SToby Isaac } 58288bdff64SToby Isaac } 58388bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58488bdff64SToby Isaac refct--; 58588bdff64SToby Isaac if (recurseFine) { 58688bdff64SToby Isaac PetscInt fineCount; 58788bdff64SToby Isaac 58862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 58988bdff64SToby Isaac refct += fineCount; 59088bdff64SToby Isaac } 59188bdff64SToby Isaac } 59288bdff64SToby Isaac *ncrefct = refct; 5933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59488bdff64SToby Isaac } 59588bdff64SToby Isaac 59662e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 59762e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 59862e5d2d2SJDBetteridge { 59962e5d2d2SJDBetteridge PetscFunctionBegin; 60062e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60262e5d2d2SJDBetteridge } 60362e5d2d2SJDBetteridge 604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 605d71ae5a4SJacob Faibussowitsch { 6065d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 607354557abSToby Isaac 608354557abSToby Isaac PetscFunctionBegin; 609354557abSToby Isaac /* destroy the labels */ 610354557abSToby Isaac while (next) { 611354557abSToby Isaac DMLabelLink tmp = next->next; 612354557abSToby Isaac 6135d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 614ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6169566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 617354557abSToby Isaac next = tmp; 618354557abSToby Isaac } 6195d80c0bfSVaclav Hapla dm->labels = NULL; 6203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 621354557abSToby Isaac } 622354557abSToby Isaac 62366976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 624d71ae5a4SJacob Faibussowitsch { 6256858538eSMatthew G. Knepley PetscFunctionBegin; 6266858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6276858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6286858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6296858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6306858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6326858538eSMatthew G. Knepley } 6336858538eSMatthew G. Knepley 6340764c050SBarry Smith /*@ 635bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63647c6ae99SBarry Smith 63720f4b53cSBarry Smith Collective 63847c6ae99SBarry Smith 63947c6ae99SBarry Smith Input Parameter: 640bb7acecfSBarry Smith . dm - the `DM` object to destroy 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith Level: developer 64347c6ae99SBarry Smith 6441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64547c6ae99SBarry Smith @*/ 646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 647d71ae5a4SJacob Faibussowitsch { 6486eb26441SStefano Zampini PetscInt cnt; 64947c6ae99SBarry Smith 65047c6ae99SBarry Smith PetscFunctionBegin; 6513ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 652f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65387e657c6SBarry Smith 65488bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 656f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6579371c9d4SSatish Balay if (--cnt > 0) { 6589371c9d4SSatish Balay *dm = NULL; 6593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6609371c9d4SSatish Balay } 661f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 662f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6636eb26441SStefano Zampini 6649566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6659566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 666974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 667974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6682348bcf4SPeter Brune 669b17ce1afSJed Brown /* Destroy the list of hooks */ 670c833c3b5SJed Brown { 671c833c3b5SJed Brown DMCoarsenHookLink link, next; 672b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 673b17ce1afSJed Brown next = link->next; 6749566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 675b17ce1afSJed Brown } 6760298fd71SBarry Smith (*dm)->coarsenhook = NULL; 677c833c3b5SJed Brown } 678c833c3b5SJed Brown { 679c833c3b5SJed Brown DMRefineHookLink link, next; 680c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 681c833c3b5SJed Brown next = link->next; 6829566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 683c833c3b5SJed Brown } 6840298fd71SBarry Smith (*dm)->refinehook = NULL; 685c833c3b5SJed Brown } 686be081cd6SPeter Brune { 687be081cd6SPeter Brune DMSubDomainHookLink link, next; 688be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 689be081cd6SPeter Brune next = link->next; 6909566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 691be081cd6SPeter Brune } 6920298fd71SBarry Smith (*dm)->subdomainhook = NULL; 693be081cd6SPeter Brune } 694baf369e7SPeter Brune { 695baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 696baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 697baf369e7SPeter Brune next = link->next; 6989566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 699baf369e7SPeter Brune } 7000298fd71SBarry Smith (*dm)->gtolhook = NULL; 701baf369e7SPeter Brune } 702d4d07f1eSToby Isaac { 703d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 704d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 705d4d07f1eSToby Isaac next = link->next; 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 707d4d07f1eSToby Isaac } 708d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 709d4d07f1eSToby Isaac } 710aa1993deSMatthew G Knepley /* Destroy the work arrays */ 711aa1993deSMatthew G Knepley { 712aa1993deSMatthew G Knepley DMWorkLink link, next; 713835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 714aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 715aa1993deSMatthew G Knepley next = link->next; 7169566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7179566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 718aa1993deSMatthew G Knepley } 7190298fd71SBarry Smith (*dm)->workin = NULL; 720aa1993deSMatthew G Knepley } 721c58f1c22SToby Isaac /* destroy the labels */ 7229566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 723f4cdcedcSVaclav Hapla /* destroy the fields */ 7249566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 725f4cdcedcSVaclav Hapla /* destroy the boundaries */ 726e6f8dbb6SToby Isaac { 727e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 728e6f8dbb6SToby Isaac while (next) { 729e6f8dbb6SToby Isaac DMBoundary b = next; 730e6f8dbb6SToby Isaac 731e6f8dbb6SToby Isaac next = b->next; 7329566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 733e6f8dbb6SToby Isaac } 734e6f8dbb6SToby Isaac } 735b17ce1afSJed Brown 7369566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7379566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7389566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 73952536dc3SBarry Smith 74048a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7419566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7429566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7439566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7449566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74588ed4aceSMatthew G Knepley 7469566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7479566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 748adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7499566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7529566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75448a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7559566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 756e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7579566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 75848a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7596eb26441SStefano Zampini 7609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76148a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7629566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7634fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7649566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7659566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7666858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7676858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7689566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7699566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 771ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 772ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 773ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 774ddedc8f6SJames Wright } 775ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7766636e97aSMatthew G Knepley 7779566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 779e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7809566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 781732e2eb9SMatthew G Knepley 782213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7839566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 784d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 785f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7869566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7879566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 788f918ec44SMatthew G. Knepley #endif 789435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7909566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79247c6ae99SBarry Smith } 79347c6ae99SBarry Smith 794d7bf68aeSBarry Smith /*@ 795bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 796d7bf68aeSBarry Smith 79720f4b53cSBarry Smith Collective 798d7bf68aeSBarry Smith 799d7bf68aeSBarry Smith Input Parameter: 800bb7acecfSBarry Smith . dm - the `DM` object to setup 801d7bf68aeSBarry Smith 802bb7acecfSBarry Smith Level: intermediate 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Note: 805bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 806bb7acecfSBarry Smith 8071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 808d7bf68aeSBarry Smith @*/ 809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 810d71ae5a4SJacob Faibussowitsch { 811d7bf68aeSBarry Smith PetscFunctionBegin; 812171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8133ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 814dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8158387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 817d7bf68aeSBarry Smith } 818d7bf68aeSBarry Smith 819d7bf68aeSBarry Smith /*@ 820bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 821d7bf68aeSBarry Smith 82220f4b53cSBarry Smith Collective 823d7bf68aeSBarry Smith 824d7bf68aeSBarry Smith Input Parameter: 825bb7acecfSBarry Smith . dm - the `DM` object to set options for 826d7bf68aeSBarry Smith 82720f4b53cSBarry Smith Options Database Keys: 828bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 829bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 830bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 831a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83220f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83322d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 83420f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8359318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 836cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8375dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8389318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8399318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8409318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 841bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 842bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 843b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8449318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 845be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 846be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 847be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8489318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8499318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8509318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 851bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8529318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8539318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8549318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 856bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8579318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8589318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8599318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8609318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 861bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 862d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 867909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 868909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8699318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8709318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8719318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87220f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 873d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87420f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 875bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 876bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 877bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 878bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 879bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 880384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 881d7bf68aeSBarry Smith 88295eb5ee5SVaclav Hapla Level: intermediate 88395eb5ee5SVaclav Hapla 8848e704042SBarry Smith Note: 8858e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8868e704042SBarry Smith 8871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 888bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8898e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 890d7bf68aeSBarry Smith @*/ 891d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 892d71ae5a4SJacob Faibussowitsch { 8937781c08eSBarry Smith char typeName[256]; 894ca266f36SBarry Smith PetscBool flg; 895d7bf68aeSBarry Smith 896d7bf68aeSBarry Smith PetscFunctionBegin; 897171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89849be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8999566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9009566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 901dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 902d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9051baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9069566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9071baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 908863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 911eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 912dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 913f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 914dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 915d0609cedSBarry Smith PetscOptionsEnd(); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7bf68aeSBarry Smith } 918d7bf68aeSBarry Smith 919ffeef943SBarry Smith /*@ 920bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 921fe2efc57SMark 92220f4b53cSBarry Smith Collective 923fe2efc57SMark 924fe2efc57SMark Input Parameters: 925bb7acecfSBarry Smith + dm - the `DM` object 92620f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92760225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 928fe2efc57SMark 929fe2efc57SMark Level: intermediate 930bb7acecfSBarry Smith 931bb7acecfSBarry Smith Note: 932bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 933bb7acecfSBarry Smith 93460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 935fe2efc57SMark @*/ 936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 937d71ae5a4SJacob Faibussowitsch { 938fe2efc57SMark PetscFunctionBegin; 939fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9409566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 942fe2efc57SMark } 943fe2efc57SMark 944ffeef943SBarry Smith /*@ 945bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 946bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94747c6ae99SBarry Smith 94820f4b53cSBarry Smith Collective 94947c6ae99SBarry Smith 950d8d19677SJose E. Roman Input Parameters: 951bb7acecfSBarry Smith + dm - the `DM` object to view 95247c6ae99SBarry Smith - v - the viewer 95347c6ae99SBarry Smith 95420f4b53cSBarry Smith Level: beginner 95520f4b53cSBarry Smith 95649c89c76SBlaise Bourdin Notes: 95749c89c76SBlaise Bourdin 95849c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 959bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 960bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 961cd7e8a5eSksagiyam 96249c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 96349c89c76SBlaise Bourdin consists of sequentially numbered cells. 96449c89c76SBlaise Bourdin 96549c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 96649c89c76SBlaise Bourdin 96749c89c76SBlaise Bourdin Only TRI, TET, QUAD, and HEX cells are supported. 96849c89c76SBlaise Bourdin 96949c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97049c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97149c89c76SBlaise Bourdin 972d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 97349c89c76SBlaise Bourdin 9741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 97547c6ae99SBarry Smith @*/ 976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 977d71ae5a4SJacob Faibussowitsch { 97832c0f0efSBarry Smith PetscBool isbinary; 97976a8abe0SBarry Smith PetscMPIInt size; 98076a8abe0SBarry Smith PetscViewerFormat format; 98147c6ae99SBarry Smith 98247c6ae99SBarry Smith PetscFunctionBegin; 983171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 98448a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 985b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 98674903a4fSStefano Zampini /* Ideally, we would like to have this test on. 98774903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 98874903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 98974903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99074903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99174903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 99274903a4fSStefano Zampini in an error here */ 99374903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 995b1b135c8SBarry Smith 996*42d0c57aSJames Wright PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0)); 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9993ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 10009566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 100232c0f0efSBarry Smith if (isbinary) { 100355849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 100432c0f0efSBarry Smith char type[256]; 100532c0f0efSBarry Smith 10069566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1007c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10089566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 100932c0f0efSBarry Smith } 1010dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 1011*42d0c57aSJames Wright PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0)); 10123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 101347c6ae99SBarry Smith } 101447c6ae99SBarry Smith 101547c6ae99SBarry Smith /*@ 1016bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1017bb7acecfSBarry Smith that is it has no ghost locations. 101847c6ae99SBarry Smith 101920f4b53cSBarry Smith Collective 102047c6ae99SBarry Smith 102147c6ae99SBarry Smith Input Parameter: 1022bb7acecfSBarry Smith . dm - the `DM` object 102347c6ae99SBarry Smith 102447c6ae99SBarry Smith Output Parameter: 102547c6ae99SBarry Smith . vec - the global vector 102647c6ae99SBarry Smith 1027073dac72SJed Brown Level: beginner 102847c6ae99SBarry Smith 10291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1030bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 103147c6ae99SBarry Smith @*/ 1032d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1033d71ae5a4SJacob Faibussowitsch { 103447c6ae99SBarry Smith PetscFunctionBegin; 1035171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10364f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1037dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 103876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1039c6b011d8SStefano Zampini DM vdm; 1040c6b011d8SStefano Zampini 10419566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10427a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1043c6b011d8SStefano Zampini } 10443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104547c6ae99SBarry Smith } 104647c6ae99SBarry Smith 104747c6ae99SBarry Smith /*@ 1048bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 104947c6ae99SBarry Smith 105047c6ae99SBarry Smith Not Collective 105147c6ae99SBarry Smith 105247c6ae99SBarry Smith Input Parameter: 1053bb7acecfSBarry Smith . dm - the `DM` object 105447c6ae99SBarry Smith 105547c6ae99SBarry Smith Output Parameter: 105647c6ae99SBarry Smith . vec - the local vector 105747c6ae99SBarry Smith 1058073dac72SJed Brown Level: beginner 105947c6ae99SBarry Smith 106020f4b53cSBarry Smith Note: 1061bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1062bb7acecfSBarry Smith 10631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1064bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 106547c6ae99SBarry Smith @*/ 1066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1067d71ae5a4SJacob Faibussowitsch { 106847c6ae99SBarry Smith PetscFunctionBegin; 1069171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10704f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1071dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 107276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1073c6b011d8SStefano Zampini DM vdm; 1074c6b011d8SStefano Zampini 10759566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10767a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1077c6b011d8SStefano Zampini } 10783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 107947c6ae99SBarry Smith } 108047c6ae99SBarry Smith 10811411c6eeSJed Brown /*@ 1082bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10831411c6eeSJed Brown 108420f4b53cSBarry Smith Collective 10851411c6eeSJed Brown 10861411c6eeSJed Brown Input Parameter: 1087bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10881411c6eeSJed Brown 10891411c6eeSJed Brown Output Parameter: 10901411c6eeSJed Brown . ltog - the mapping 10911411c6eeSJed Brown 1092bb7acecfSBarry Smith Level: advanced 10931411c6eeSJed Brown 10941411c6eeSJed Brown Notes: 1095bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10961411c6eeSJed Brown 1097bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1098bb7acecfSBarry Smith need to use this function with those objects. 1099bb7acecfSBarry Smith 1100bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1101bb7acecfSBarry Smith 110260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1103bb7acecfSBarry Smith `DMCreateMatrix()` 11041411c6eeSJed Brown @*/ 1105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1106d71ae5a4SJacob Faibussowitsch { 11070be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11081411c6eeSJed Brown 11091411c6eeSJed Brown PetscFunctionBegin; 11101411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11114f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11121411c6eeSJed Brown if (!dm->ltogmap) { 111337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 111437d0c07bSMatthew G Knepley 11159566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 111637d0c07bSMatthew G Knepley if (section) { 1117a974ec88SMatthew G. Knepley const PetscInt *cdofs; 111837d0c07bSMatthew G Knepley PetscInt *ltog; 1119ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 112037d0c07bSMatthew G Knepley 11219566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 112537d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1126e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 112737d0c07bSMatthew G Knepley 112837d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11331a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11341a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1135ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11365227eafbSStefano Zampini 1137e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11385227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1139e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1140e6befd46SJed Brown cind++; 1141e6befd46SJed Brown } else { 11425227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1143e6befd46SJed Brown } 114437d0c07bSMatthew G Knepley } 114537d0c07bSMatthew G Knepley } 1146bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11471690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11489371c9d4SSatish Balay bsLocal[1] = bs; 11499566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11509371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11519371c9d4SSatish Balay bs = 1; 11529371c9d4SSatish Balay } else { 11539371c9d4SSatish Balay bs = bsMinMax[0]; 11549371c9d4SSatish Balay } 11557591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11567591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1157ccf3bd66SMatthew G. Knepley if (bs > 1) { 1158ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1159ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1160ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1161ca469d19SJed Brown } 1162ccf3bd66SMatthew G. Knepley n /= bs; 1163ccf3bd66SMatthew G. Knepley } 11649566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1165dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 116637d0c07bSMatthew G Knepley } 11671411c6eeSJed Brown *ltog = dm->ltogmap; 11683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11691411c6eeSJed Brown } 11701411c6eeSJed Brown 11711411c6eeSJed Brown /*@ 1172bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11731411c6eeSJed Brown 11741411c6eeSJed Brown Not Collective 11751411c6eeSJed Brown 11761411c6eeSJed Brown Input Parameter: 1177bb7acecfSBarry Smith . dm - the `DM` with block structure 11781411c6eeSJed Brown 11791411c6eeSJed Brown Output Parameter: 11801411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11811411c6eeSJed Brown 11821411c6eeSJed Brown Level: intermediate 11831411c6eeSJed Brown 118473ff1848SBarry Smith Notes: 1185bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1186bb7acecfSBarry Smith 1187bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1188bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1189bb7acecfSBarry Smith 11901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11911411c6eeSJed Brown @*/ 1192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1193d71ae5a4SJacob Faibussowitsch { 11941411c6eeSJed Brown PetscFunctionBegin; 11951411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11964f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11977a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11981411c6eeSJed Brown *bs = dm->bs; 11993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12001411c6eeSJed Brown } 12011411c6eeSJed Brown 1202ffeef943SBarry Smith /*@ 1203bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1204bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 120547c6ae99SBarry Smith 120620f4b53cSBarry Smith Collective 120747c6ae99SBarry Smith 1208d8d19677SJose E. Roman Input Parameters: 1209bb7acecfSBarry Smith + dmc - the `DM` object 1210bb7acecfSBarry Smith - dmf - the second, finer `DM` object 121147c6ae99SBarry Smith 1212d8d19677SJose E. Roman Output Parameters: 121347c6ae99SBarry Smith + mat - the interpolation 1214b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 121547c6ae99SBarry Smith 121647c6ae99SBarry Smith Level: developer 121747c6ae99SBarry Smith 121895452b02SPatrick Sanan Notes: 1219bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1220bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1221d52bd9f3SBarry Smith 1222bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1223bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 122485afcc9aSBarry Smith 12251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 122647c6ae99SBarry Smith @*/ 1227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1228d71ae5a4SJacob Faibussowitsch { 122947c6ae99SBarry Smith PetscFunctionBegin; 1230a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1231a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12324f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1234dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12359566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123747c6ae99SBarry Smith } 123847c6ae99SBarry Smith 12393ad4599aSBarry Smith /*@ 1240a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1241a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12422ed6491fSPatrick Sanan 12432ed6491fSPatrick Sanan Input Parameters: 1244bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1245bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12462ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12472ed6491fSPatrick Sanan 12482ed6491fSPatrick Sanan Output Parameter: 12492ed6491fSPatrick Sanan . scale - the scaled vector 12502ed6491fSPatrick Sanan 1251bb7acecfSBarry Smith Level: advanced 12522ed6491fSPatrick Sanan 125373ff1848SBarry Smith Note: 1254a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1255a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1256a4e35b19SJacob Faibussowitsch 125773ff1848SBarry Smith Developer Note: 1258bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1259e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1260e9c74fd6SRichard Tran Mills 126160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12622ed6491fSPatrick Sanan @*/ 1263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1264d71ae5a4SJacob Faibussowitsch { 12652ed6491fSPatrick Sanan Vec fine; 12662ed6491fSPatrick Sanan PetscScalar one = 1.0; 12679704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1268e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12699704db99SRichard Tran Mills #endif 12702ed6491fSPatrick Sanan 12712ed6491fSPatrick Sanan PetscFunctionBegin; 12729566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12739566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12749566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12759704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12769704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12779704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12789704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12799566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1280e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12819566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12829566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12839566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 128483aa49f4SRichard Tran Mills } 12859704db99SRichard Tran Mills #endif 12869566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12889566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12902ed6491fSPatrick Sanan } 12912ed6491fSPatrick Sanan 12922ed6491fSPatrick Sanan /*@ 1293bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1294bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12953ad4599aSBarry Smith 129620f4b53cSBarry Smith Collective 12973ad4599aSBarry Smith 1298d8d19677SJose E. Roman Input Parameters: 1299bb7acecfSBarry Smith + dmc - the `DM` object 1300bb7acecfSBarry Smith - dmf - the second, finer `DM` object 13013ad4599aSBarry Smith 13023ad4599aSBarry Smith Output Parameter: 13033ad4599aSBarry Smith . mat - the restriction 13043ad4599aSBarry Smith 13053ad4599aSBarry Smith Level: developer 13063ad4599aSBarry Smith 1307bb7acecfSBarry Smith Note: 1308bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1309bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13103ad4599aSBarry Smith 13111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13123ad4599aSBarry Smith @*/ 1313d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1314d71ae5a4SJacob Faibussowitsch { 13153ad4599aSBarry Smith PetscFunctionBegin; 1316a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1317a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13184f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13199566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1320dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13219566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13233ad4599aSBarry Smith } 13243ad4599aSBarry Smith 132547c6ae99SBarry Smith /*@ 1326a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 132747c6ae99SBarry Smith 132820f4b53cSBarry Smith Collective 132947c6ae99SBarry Smith 1330d8d19677SJose E. Roman Input Parameters: 1331bb7acecfSBarry Smith + dac - the `DM` object 1332bb7acecfSBarry Smith - daf - the second, finer `DM` object 133347c6ae99SBarry Smith 133447c6ae99SBarry Smith Output Parameter: 13356dbf9973SLawrence Mitchell . mat - the injection 133647c6ae99SBarry Smith 133747c6ae99SBarry Smith Level: developer 133847c6ae99SBarry Smith 1339a4e35b19SJacob Faibussowitsch Notes: 1340a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1341a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1342a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1343a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1344a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1345a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1346a4e35b19SJacob Faibussowitsch 1347bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1348bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 134985afcc9aSBarry Smith 13501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1351bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 135247c6ae99SBarry Smith @*/ 1353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1354d71ae5a4SJacob Faibussowitsch { 135547c6ae99SBarry Smith PetscFunctionBegin; 1356a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1357a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13584f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1360dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13619566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 136347c6ae99SBarry Smith } 136447c6ae99SBarry Smith 1365b412c318SBarry Smith /*@ 1366bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1367bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1368bd041c0cSMatthew G. Knepley 136920f4b53cSBarry Smith Collective 1370bd041c0cSMatthew G. Knepley 1371d8d19677SJose E. Roman Input Parameters: 1372bb7acecfSBarry Smith + dmc - the target `DM` object 13738c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1374bd041c0cSMatthew G. Knepley 1375bd041c0cSMatthew G. Knepley Output Parameter: 1376b4937a87SMatthew G. Knepley . mat - the mass matrix 1377bd041c0cSMatthew G. Knepley 1378bd041c0cSMatthew G. Knepley Level: developer 1379bd041c0cSMatthew G. Knepley 1380bb7acecfSBarry Smith Notes: 1381bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1382bb7acecfSBarry Smith 13838c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1384bb7acecfSBarry Smith 138542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1386bd041c0cSMatthew G. Knepley @*/ 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1388d71ae5a4SJacob Faibussowitsch { 1389bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1390b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13918c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1392b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13934f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13948c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1395dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13968c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398b4937a87SMatthew G. Knepley } 1399b4937a87SMatthew G. Knepley 1400b4937a87SMatthew G. Knepley /*@ 1401bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1402b4937a87SMatthew G. Knepley 140320f4b53cSBarry Smith Collective 1404b4937a87SMatthew G. Knepley 1405b4937a87SMatthew G. Knepley Input Parameter: 1406bb7acecfSBarry Smith . dm - the `DM` object 1407b4937a87SMatthew G. Knepley 14087dcfde4dSJose E. Roman Output Parameters: 14098e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14108e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1411b4937a87SMatthew G. Knepley 1412b4937a87SMatthew G. Knepley Level: developer 1413b4937a87SMatthew G. Knepley 1414bb7acecfSBarry Smith Note: 1415bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1416bb7acecfSBarry Smith 141760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1418b4937a87SMatthew G. Knepley @*/ 14198e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1420d71ae5a4SJacob Faibussowitsch { 1421b4937a87SMatthew G. Knepley PetscFunctionBegin; 1422b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14238e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14248e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14258e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1427bd041c0cSMatthew G. Knepley } 1428bd041c0cSMatthew G. Knepley 1429bd041c0cSMatthew G. Knepley /*@ 1430bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1431bb7acecfSBarry Smith of a PDE on the `DM`. 143247c6ae99SBarry Smith 143320f4b53cSBarry Smith Collective 143447c6ae99SBarry Smith 1435d8d19677SJose E. Roman Input Parameters: 1436bb7acecfSBarry Smith + dm - the `DM` object 1437bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 143847c6ae99SBarry Smith 143947c6ae99SBarry Smith Output Parameter: 144047c6ae99SBarry Smith . coloring - the coloring 144147c6ae99SBarry Smith 14421bf8429eSBarry Smith Level: developer 14431bf8429eSBarry Smith 1444ec5066bdSBarry Smith Notes: 1445bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1446bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1447ec5066bdSBarry Smith 1448bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14491bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14501bf8429eSBarry Smith otherwise an error will be generated. 1451ec5066bdSBarry Smith 14521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1453aab9d709SJed Brown @*/ 1454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1455d71ae5a4SJacob Faibussowitsch { 145647c6ae99SBarry Smith PetscFunctionBegin; 1457171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14584f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1459dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 146147c6ae99SBarry Smith } 146247c6ae99SBarry Smith 1463b412c318SBarry Smith /*@ 1464bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 146547c6ae99SBarry Smith 146620f4b53cSBarry Smith Collective 146747c6ae99SBarry Smith 146847c6ae99SBarry Smith Input Parameter: 1469bb7acecfSBarry Smith . dm - the `DM` object 147047c6ae99SBarry Smith 147147c6ae99SBarry Smith Output Parameter: 147247c6ae99SBarry Smith . mat - the empty Jacobian 147347c6ae99SBarry Smith 147420f4b53cSBarry Smith Options Database Key: 1475bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1476f27dd7c6SMatthew G. Knepley 147720f4b53cSBarry Smith Level: beginner 147820f4b53cSBarry Smith 147995452b02SPatrick Sanan Notes: 148095452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 148194013140SBarry Smith do not need to do it yourself. 148294013140SBarry Smith 148394013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1484bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 148594013140SBarry Smith 1486bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 148794013140SBarry Smith internally by PETSc. 148894013140SBarry Smith 1489bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1490bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 149194013140SBarry Smith 14921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1493aab9d709SJed Brown @*/ 1494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1495d71ae5a4SJacob Faibussowitsch { 149647c6ae99SBarry Smith PetscFunctionBegin; 1497171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14984f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14999566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 15009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1501dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 150276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1503c6b011d8SStefano Zampini DM mdm; 1504c6b011d8SStefano Zampini 15059566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15067a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1507c6b011d8SStefano Zampini } 1508e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1509e5e52638SMatthew G. Knepley if (dm->Nf) { 1510e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1511649ef022SMatthew Knepley PetscInt Nf, f; 1512e571a35bSMatthew G. Knepley 15139566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1514649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1515649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 15169566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15189566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1519649ef022SMatthew Knepley break; 1520e571a35bSMatthew G. Knepley } 1521649ef022SMatthew Knepley } 1522649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1523649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15249566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15259566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15269566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1527e571a35bSMatthew G. Knepley } 1528e571a35bSMatthew G. Knepley } 1529e571a35bSMatthew G. Knepley } 15309566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 153247c6ae99SBarry Smith } 153347c6ae99SBarry Smith 1534732e2eb9SMatthew G Knepley /*@ 1535a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1536a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1537a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1538aa0f6e3cSJed Brown 153920f4b53cSBarry Smith Logically Collective 1540aa0f6e3cSJed Brown 1541aa0f6e3cSJed Brown Input Parameters: 1542bb7acecfSBarry Smith + dm - the `DM` 1543bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1544aa0f6e3cSJed Brown 1545aa0f6e3cSJed Brown Level: developer 1546aa0f6e3cSJed Brown 154773ff1848SBarry Smith Note: 1548a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1549a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1550a4e35b19SJacob Faibussowitsch 15511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1552aa0f6e3cSJed Brown @*/ 1553d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1554d71ae5a4SJacob Faibussowitsch { 1555aa0f6e3cSJed Brown PetscFunctionBegin; 1556aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1557aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1559aa0f6e3cSJed Brown } 1560aa0f6e3cSJed Brown 1561aa0f6e3cSJed Brown /*@ 1562bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1563732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1564732e2eb9SMatthew G Knepley 156520f4b53cSBarry Smith Logically Collective 1566732e2eb9SMatthew G Knepley 1567d8d19677SJose E. Roman Input Parameters: 1568bb7acecfSBarry Smith + dm - the `DM` 1569bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1570732e2eb9SMatthew G Knepley 157120f4b53cSBarry Smith Options Database Key: 1572bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1573f27dd7c6SMatthew G. Knepley 157420f4b53cSBarry Smith Level: developer 157520f4b53cSBarry Smith 15761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1577732e2eb9SMatthew G Knepley @*/ 1578d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1579d71ae5a4SJacob Faibussowitsch { 1580732e2eb9SMatthew G Knepley PetscFunctionBegin; 1581732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1582732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1584732e2eb9SMatthew G Knepley } 1585732e2eb9SMatthew G Knepley 1586b06ff27eSHong Zhang /*@ 1587bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1588bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1589b06ff27eSHong Zhang 159020f4b53cSBarry Smith Logically Collective 1591b06ff27eSHong Zhang 1592d8d19677SJose E. Roman Input Parameters: 1593bb7acecfSBarry Smith + dm - the `DM` 1594da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1595b06ff27eSHong Zhang 1596b06ff27eSHong Zhang Level: developer 1597bb7acecfSBarry Smith 15981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1599b06ff27eSHong Zhang @*/ 1600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1601d71ae5a4SJacob Faibussowitsch { 1602b06ff27eSHong Zhang PetscFunctionBegin; 1603b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1604b06ff27eSHong Zhang dm->structure_only = only; 16053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1606b06ff27eSHong Zhang } 1607b06ff27eSHong Zhang 1608863027abSJed Brown /*@ 1609863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1610863027abSJed Brown 161120f4b53cSBarry Smith Logically Collective 1612863027abSJed Brown 1613863027abSJed Brown Input Parameters: 1614863027abSJed Brown + dm - the `DM` 1615863027abSJed Brown - btype - block by topological point or field node 1616863027abSJed Brown 161720f4b53cSBarry Smith Options Database Key: 16180e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1619863027abSJed Brown 162020f4b53cSBarry Smith Level: advanced 162120f4b53cSBarry Smith 16221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1623863027abSJed Brown @*/ 1624863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1625863027abSJed Brown { 1626863027abSJed Brown PetscFunctionBegin; 1627863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1628863027abSJed Brown dm->blocking_type = btype; 16293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1630863027abSJed Brown } 1631863027abSJed Brown 1632863027abSJed Brown /*@ 1633863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1634863027abSJed Brown 1635863027abSJed Brown Not Collective 1636863027abSJed Brown 16372fe279fdSBarry Smith Input Parameter: 1638863027abSJed Brown . dm - the `DM` 1639863027abSJed Brown 16402fe279fdSBarry Smith Output Parameter: 1641863027abSJed Brown . btype - block by topological point or field node 1642863027abSJed Brown 1643863027abSJed Brown Level: advanced 1644863027abSJed Brown 16451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1646863027abSJed Brown @*/ 1647863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1648863027abSJed Brown { 1649863027abSJed Brown PetscFunctionBegin; 1650863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16514f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1652863027abSJed Brown *btype = dm->blocking_type; 16533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1654863027abSJed Brown } 1655863027abSJed Brown 1656a89ea682SMatthew G Knepley /*@C 1657bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1658a89ea682SMatthew G Knepley 1659a89ea682SMatthew G Knepley Not Collective 1660a89ea682SMatthew G Knepley 1661a89ea682SMatthew G Knepley Input Parameters: 1662bb7acecfSBarry Smith + dm - the `DM` object 1663a5b23f4aSJose E. Roman . count - The minimum size 166420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1665a89ea682SMatthew G Knepley 1666a89ea682SMatthew G Knepley Output Parameter: 166760225df5SJacob Faibussowitsch . mem - the work array 1668a89ea682SMatthew G Knepley 1669a89ea682SMatthew G Knepley Level: developer 1670a89ea682SMatthew G Knepley 167173ff1848SBarry Smith Notes: 1672da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1673bb7acecfSBarry Smith 1674bb7acecfSBarry Smith The array may contain nonzero values 1675bb7acecfSBarry Smith 16761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1677a89ea682SMatthew G Knepley @*/ 1678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1679d71ae5a4SJacob Faibussowitsch { 1680aa1993deSMatthew G Knepley DMWorkLink link; 168169291d52SBarry Smith PetscMPIInt dsize; 1682a89ea682SMatthew G Knepley 1683a89ea682SMatthew G Knepley PetscFunctionBegin; 1684a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16854f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1686442f3b32SStefano Zampini if (!count) { 1687442f3b32SStefano Zampini *(void **)mem = NULL; 1688442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1689442f3b32SStefano Zampini } 1690aa1993deSMatthew G Knepley if (dm->workin) { 1691aa1993deSMatthew G Knepley link = dm->workin; 1692aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1693aa1993deSMatthew G Knepley } else { 16944dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1695a89ea682SMatthew G Knepley } 1696b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1697b77fa653SStefano Zampini Get size directly */ 1698b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1699b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1700b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1701b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1702b77fa653SStefano Zampini #endif 1703b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1704b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1705b77fa653SStefano Zampini #endif 1706b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1707b77fa653SStefano Zampini 17085056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17099566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17109566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1711854ce69bSBarry Smith link->bytes = dsize * count; 1712aa1993deSMatthew G Knepley } 1713aa1993deSMatthew G Knepley link->next = dm->workout; 1714aa1993deSMatthew G Knepley dm->workout = link; 1715aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1717a89ea682SMatthew G Knepley } 1718a89ea682SMatthew G Knepley 1719aa1993deSMatthew G Knepley /*@C 1720bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1721aa1993deSMatthew G Knepley 1722aa1993deSMatthew G Knepley Not Collective 1723aa1993deSMatthew G Knepley 1724aa1993deSMatthew G Knepley Input Parameters: 1725bb7acecfSBarry Smith + dm - the `DM` object 1726a5b23f4aSJose E. Roman . count - The minimum size 172720f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1728aa1993deSMatthew G Knepley 1729aa1993deSMatthew G Knepley Output Parameter: 173060225df5SJacob Faibussowitsch . mem - the work array 1731aa1993deSMatthew G Knepley 1732aa1993deSMatthew G Knepley Level: developer 1733aa1993deSMatthew G Knepley 173473ff1848SBarry Smith Developer Note: 1735bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1736147403d9SBarry Smith 17371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1738aa1993deSMatthew G Knepley @*/ 1739d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1740d71ae5a4SJacob Faibussowitsch { 1741aa1993deSMatthew G Knepley DMWorkLink *p, link; 1742aa1993deSMatthew G Knepley 1743aa1993deSMatthew G Knepley PetscFunctionBegin; 1744aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17454f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1746a4e35b19SJacob Faibussowitsch (void)count; 1747a4e35b19SJacob Faibussowitsch (void)dtype; 1748442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1749aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1750aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1751aa1993deSMatthew G Knepley *p = link->next; 1752aa1993deSMatthew G Knepley link->next = dm->workin; 1753aa1993deSMatthew G Knepley dm->workin = link; 17540298fd71SBarry Smith *(void **)mem = NULL; 17553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1756aa1993deSMatthew G Knepley } 1757aa1993deSMatthew G Knepley } 1758aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1759aa1993deSMatthew G Knepley } 1760e7c4fc90SDmitry Karpeev 17618cda7954SMatthew G. Knepley /*@C 1762bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1763bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17648cda7954SMatthew G. Knepley 176520f4b53cSBarry Smith Logically Collective; No Fortran Support 17668cda7954SMatthew G. Knepley 17678cda7954SMatthew G. Knepley Input Parameters: 1768bb7acecfSBarry Smith + dm - The `DM` 17698cda7954SMatthew G. Knepley . field - The field number for the nullspace 17708cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17718cda7954SMatthew G. Knepley 177220f4b53cSBarry Smith Calling sequence of `nullsp`: 1773bb7acecfSBarry Smith + dm - The present `DM` 1774bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1775147403d9SBarry Smith . field - The field number in dm 1776147403d9SBarry Smith - nullSpace - The nullspace for the given field 17778cda7954SMatthew G. Knepley 177849762cbcSSatish Balay Level: intermediate 177949762cbcSSatish Balay 17801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1781147403d9SBarry Smith @*/ 1782a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1783d71ae5a4SJacob Faibussowitsch { 1784435a35e8SMatthew G Knepley PetscFunctionBegin; 1785435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17867a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1787435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1789435a35e8SMatthew G Knepley } 1790435a35e8SMatthew G Knepley 17918cda7954SMatthew G. Knepley /*@C 1792bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17938cda7954SMatthew G. Knepley 179420f4b53cSBarry Smith Not Collective; No Fortran Support 17958cda7954SMatthew G. Knepley 17968cda7954SMatthew G. Knepley Input Parameters: 1797bb7acecfSBarry Smith + dm - The `DM` 17988cda7954SMatthew G. Knepley - field - The field number for the nullspace 17998cda7954SMatthew G. Knepley 18008cda7954SMatthew G. Knepley Output Parameter: 18018cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18028cda7954SMatthew G. Knepley 180320f4b53cSBarry Smith Calling sequence of `nullsp`: 1804147403d9SBarry Smith + dm - The present DM 1805147403d9SBarry Smith . origField - The field number given above, in the original DM 1806147403d9SBarry Smith . field - The field number in dm 1807147403d9SBarry Smith - nullSpace - The nullspace for the given field 18088cda7954SMatthew G. Knepley 180949762cbcSSatish Balay Level: intermediate 181049762cbcSSatish Balay 18111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1812147403d9SBarry Smith @*/ 1813a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1814d71ae5a4SJacob Faibussowitsch { 18150a50eb56SMatthew G. Knepley PetscFunctionBegin; 18160a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18174f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18187a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18190a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18210a50eb56SMatthew G. Knepley } 18220a50eb56SMatthew G. Knepley 18238cda7954SMatthew G. Knepley /*@C 1824bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18258cda7954SMatthew G. Knepley 182620f4b53cSBarry Smith Logically Collective; No Fortran Support 18278cda7954SMatthew G. Knepley 18288cda7954SMatthew G. Knepley Input Parameters: 1829bb7acecfSBarry Smith + dm - The `DM` 18308cda7954SMatthew G. Knepley . field - The field number for the nullspace 18318cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18328cda7954SMatthew G. Knepley 183320f4b53cSBarry Smith Calling sequence of `nullsp`: 1834bb7acecfSBarry Smith + dm - The present `DM` 1835bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1836147403d9SBarry Smith . field - The field number in dm 1837147403d9SBarry Smith - nullSpace - The nullspace for the given field 18388cda7954SMatthew G. Knepley 183949762cbcSSatish Balay Level: intermediate 184049762cbcSSatish Balay 18411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1842bb7acecfSBarry Smith `MatNullSpace` 1843147403d9SBarry Smith @*/ 1844a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1845d71ae5a4SJacob Faibussowitsch { 1846f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1847f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18487a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1849f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1851f9d4088aSMatthew G. Knepley } 1852f9d4088aSMatthew G. Knepley 18538cda7954SMatthew G. Knepley /*@C 1854bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18558cda7954SMatthew G. Knepley 185620f4b53cSBarry Smith Not Collective; No Fortran Support 18578cda7954SMatthew G. Knepley 18588cda7954SMatthew G. Knepley Input Parameters: 1859bb7acecfSBarry Smith + dm - The `DM` 18608cda7954SMatthew G. Knepley - field - The field number for the nullspace 18618cda7954SMatthew G. Knepley 18628cda7954SMatthew G. Knepley Output Parameter: 18638cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18648cda7954SMatthew G. Knepley 186520f4b53cSBarry Smith Calling sequence of `nullsp`: 1866bb7acecfSBarry Smith + dm - The present `DM` 1867bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1868147403d9SBarry Smith . field - The field number in dm 1869147403d9SBarry Smith - nullSpace - The nullspace for the given field 18708cda7954SMatthew G. Knepley 187149762cbcSSatish Balay Level: intermediate 187249762cbcSSatish Balay 18731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1874bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1875147403d9SBarry Smith @*/ 1876a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1877d71ae5a4SJacob Faibussowitsch { 1878f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1879f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18804f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18817a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1882f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1884f9d4088aSMatthew G. Knepley } 1885f9d4088aSMatthew G. Knepley 18864f3b5142SJed Brown /*@C 1887bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18884d343eeaSMatthew G Knepley 188920f4b53cSBarry Smith Not Collective; No Fortran Support 18904d343eeaSMatthew G Knepley 18914d343eeaSMatthew G Knepley Input Parameter: 1892bb7acecfSBarry Smith . dm - the `DM` object 18934d343eeaSMatthew G Knepley 18944d343eeaSMatthew G Knepley Output Parameters: 189520f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 189620f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 189720f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18984d343eeaSMatthew G Knepley 18994d343eeaSMatthew G Knepley Level: intermediate 19004d343eeaSMatthew G Knepley 1901bb7acecfSBarry Smith Note: 190273ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 190373ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1904bb7acecfSBarry Smith `PetscFree()`. 190521c9b008SJed Brown 190673ff1848SBarry Smith Developer Note: 1907bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1908bb7acecfSBarry Smith likely be removed. 1909bb7acecfSBarry Smith 19101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1911bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19124d343eeaSMatthew G Knepley @*/ 1913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1914d71ae5a4SJacob Faibussowitsch { 191537d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19164d343eeaSMatthew G Knepley 19174d343eeaSMatthew G Knepley PetscFunctionBegin; 19184d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 191969ca1f37SDmitry Karpeev if (numFields) { 19204f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 192169ca1f37SDmitry Karpeev *numFields = 0; 192269ca1f37SDmitry Karpeev } 192337d0c07bSMatthew G Knepley if (fieldNames) { 19244f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19250298fd71SBarry Smith *fieldNames = NULL; 192669ca1f37SDmitry Karpeev } 192769ca1f37SDmitry Karpeev if (fields) { 19284f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19290298fd71SBarry Smith *fields = NULL; 193069ca1f37SDmitry Karpeev } 19319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193237d0c07bSMatthew G Knepley if (section) { 19333a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 193437d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 193537d0c07bSMatthew G Knepley 19369566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19389566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 194037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194137d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 194337d0c07bSMatthew G Knepley } 194437d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194537d0c07bSMatthew G Knepley PetscInt gdof; 194637d0c07bSMatthew G Knepley 19479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 194837d0c07bSMatthew G Knepley if (gdof > 0) { 194937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19503a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 195137d0c07bSMatthew G Knepley 19529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19543a544194SStefano Zampini fpdof = fdof - fcdof; 19553a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19563a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19573a544194SStefano Zampini fieldNc[f] = 1; 19583a544194SStefano Zampini } 19593a544194SStefano Zampini fieldSizes[f] += fpdof; 196037d0c07bSMatthew G Knepley } 196137d0c07bSMatthew G Knepley } 196237d0c07bSMatthew G Knepley } 196337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 196537d0c07bSMatthew G Knepley fieldSizes[f] = 0; 196637d0c07bSMatthew G Knepley } 196737d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 196837d0c07bSMatthew G Knepley PetscInt gdof, goff; 196937d0c07bSMatthew G Knepley 19709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 197137d0c07bSMatthew G Knepley if (gdof > 0) { 19729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 197337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197437d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 197537d0c07bSMatthew G Knepley 19769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1978ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 197937d0c07bSMatthew G Knepley } 198037d0c07bSMatthew G Knepley } 198137d0c07bSMatthew G Knepley } 19828865f1eaSKarl Rupp if (numFields) *numFields = nF; 198337d0c07bSMatthew G Knepley if (fieldNames) { 19849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 198537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 198637d0c07bSMatthew G Knepley const char *fieldName; 198737d0c07bSMatthew G Knepley 19889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1989835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 199037d0c07bSMatthew G Knepley } 199137d0c07bSMatthew G Knepley } 199237d0c07bSMatthew G Knepley if (fields) { 19939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 199437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19953a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19963a544194SStefano Zampini 19979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19983a544194SStefano Zampini in[0] = -fieldNc[f]; 19993a544194SStefano Zampini in[1] = fieldNc[f]; 2000462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 20013a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20029566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 200337d0c07bSMatthew G Knepley } 200437d0c07bSMatthew G Knepley } 20059566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2006dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20084d343eeaSMatthew G Knepley } 20094d343eeaSMatthew G Knepley 201016621825SDmitry Karpeev /*@C 2011bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2012a4e35b19SJacob Faibussowitsch corresponding to different fields. 2013e7c4fc90SDmitry Karpeev 201420f4b53cSBarry Smith Not Collective; No Fortran Support 2015e7c4fc90SDmitry Karpeev 2016e7c4fc90SDmitry Karpeev Input Parameter: 2017bb7acecfSBarry Smith . dm - the `DM` object 2018e7c4fc90SDmitry Karpeev 2019e7c4fc90SDmitry Karpeev Output Parameters: 202020f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 202120f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202220f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 202320f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2024e7c4fc90SDmitry Karpeev 2025e7c4fc90SDmitry Karpeev Level: intermediate 2026e7c4fc90SDmitry Karpeev 2027a4e35b19SJacob Faibussowitsch Notes: 2028a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2029a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2030a4e35b19SJacob Faibussowitsch 2031a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2032a4e35b19SJacob Faibussowitsch 203373ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 203473ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2035bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2036e7c4fc90SDmitry Karpeev 203760225df5SJacob Faibussowitsch Developer Notes: 2038bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2039bb7acecfSBarry Smith 204073ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 204173ff1848SBarry Smith decomposition is computed. 204273ff1848SBarry Smith 204373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2044e7c4fc90SDmitry Karpeev @*/ 2045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2046d71ae5a4SJacob Faibussowitsch { 2047e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2048e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20498865f1eaSKarl Rupp if (len) { 20504f572ea9SToby Isaac PetscAssertPointer(len, 2); 20518865f1eaSKarl Rupp *len = 0; 20528865f1eaSKarl Rupp } 20538865f1eaSKarl Rupp if (namelist) { 20544f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2055ea78f98cSLisandro Dalcin *namelist = NULL; 20568865f1eaSKarl Rupp } 20578865f1eaSKarl Rupp if (islist) { 20584f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2059ea78f98cSLisandro Dalcin *islist = NULL; 20608865f1eaSKarl Rupp } 20618865f1eaSKarl Rupp if (dmlist) { 20624f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2063ea78f98cSLisandro Dalcin *dmlist = NULL; 20648865f1eaSKarl Rupp } 2065f3f0edfdSDmitry Karpeev /* 2066f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2067f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2068f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2069f3f0edfdSDmitry Karpeev */ 20707a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 207116621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2072435a35e8SMatthew G Knepley PetscSection section; 2073435a35e8SMatthew G Knepley PetscInt numFields, f; 2074435a35e8SMatthew G Knepley 20759566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20769566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2077435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2078f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20799566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20809566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20819566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2082435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2083435a35e8SMatthew G Knepley const char *fieldName; 2084435a35e8SMatthew G Knepley 20859566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 208603dc3394SMatthew G. Knepley if (namelist) { 20879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2088835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2089435a35e8SMatthew G Knepley } 209003dc3394SMatthew G. Knepley } 2091435a35e8SMatthew G Knepley } else { 20929566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2093e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20940298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2095e7c4fc90SDmitry Karpeev } 2096dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 209816621825SDmitry Karpeev } 209916621825SDmitry Karpeev 21005d83a8b1SBarry Smith /*@ 210120f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 210220f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2103435a35e8SMatthew G Knepley 2104435a35e8SMatthew G Knepley Not collective 2105435a35e8SMatthew G Knepley 2106435a35e8SMatthew G Knepley Input Parameters: 2107bb7acecfSBarry Smith + dm - The `DM` object 2108bb7acecfSBarry Smith . numFields - The number of fields to select 21092adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2110435a35e8SMatthew G Knepley 2111435a35e8SMatthew G Knepley Output Parameters: 2112b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2113b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2114435a35e8SMatthew G Knepley 211520f4b53cSBarry Smith Level: intermediate 211620f4b53cSBarry Smith 2117bb7acecfSBarry Smith Note: 2118bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21195d3b26e6SMatthew G. Knepley 212060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2121435a35e8SMatthew G Knepley @*/ 2122d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2123d71ae5a4SJacob Faibussowitsch { 2124435a35e8SMatthew G Knepley PetscFunctionBegin; 2125435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21264f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21274f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21284f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2129dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2131435a35e8SMatthew G Knepley } 2132435a35e8SMatthew G Knepley 21332adcc780SMatthew G. Knepley /*@C 2134bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21352adcc780SMatthew G. Knepley 21362adcc780SMatthew G. Knepley Not collective 21372adcc780SMatthew G. Knepley 2138d8d19677SJose E. Roman Input Parameters: 2139bb7acecfSBarry Smith + dms - The `DM` objects 2140bb7acecfSBarry Smith - n - The number of `DM`s 21412adcc780SMatthew G. Knepley 21422adcc780SMatthew G. Knepley Output Parameters: 2143bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2144bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21452adcc780SMatthew G. Knepley 214620f4b53cSBarry Smith Level: intermediate 214720f4b53cSBarry Smith 2148bb7acecfSBarry Smith Note: 2149bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21505d3b26e6SMatthew G. Knepley 215173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21522adcc780SMatthew G. Knepley @*/ 21535d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2154d71ae5a4SJacob Faibussowitsch { 21552adcc780SMatthew G. Knepley PetscInt i; 21562adcc780SMatthew G. Knepley 21572adcc780SMatthew G. Knepley PetscFunctionBegin; 21584f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2159ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21604f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21614f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2162bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2163bb7acecfSBarry Smith if (n) { 2164b9d85ea2SLisandro Dalcin DM dm = dms[0]; 216500045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2166dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21672adcc780SMatthew G. Knepley } 21683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21692adcc780SMatthew G. Knepley } 21702adcc780SMatthew G. Knepley 217116621825SDmitry Karpeev /*@C 2172a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2173a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 217416621825SDmitry Karpeev 217520f4b53cSBarry Smith Not Collective 217616621825SDmitry Karpeev 217716621825SDmitry Karpeev Input Parameter: 2178bb7acecfSBarry Smith . dm - the `DM` object 217916621825SDmitry Karpeev 218016621825SDmitry Karpeev Output Parameters: 218120f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 218220f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 218373ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 218473ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 218573ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 218616621825SDmitry Karpeev 218716621825SDmitry Karpeev Level: intermediate 218816621825SDmitry Karpeev 218973ff1848SBarry Smith Notes: 2190a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2191a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2192a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2193a4e35b19SJacob Faibussowitsch 2194a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2195a4e35b19SJacob Faibussowitsch 219673ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 219773ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2198bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 219916621825SDmitry Karpeev 2200a4e35b19SJacob Faibussowitsch Developer Notes: 220120f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2202bb7acecfSBarry Smith 220373ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 220473ff1848SBarry Smith 220573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 220673ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 220716621825SDmitry Karpeev @*/ 2208d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2209d71ae5a4SJacob Faibussowitsch { 2210be081cd6SPeter Brune DMSubDomainHookLink link; 2211be081cd6SPeter Brune PetscInt i, l; 221216621825SDmitry Karpeev 221316621825SDmitry Karpeev PetscFunctionBegin; 221416621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22159371c9d4SSatish Balay if (n) { 22164f572ea9SToby Isaac PetscAssertPointer(n, 2); 22179371c9d4SSatish Balay *n = 0; 22189371c9d4SSatish Balay } 22199371c9d4SSatish Balay if (namelist) { 22204f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22219371c9d4SSatish Balay *namelist = NULL; 22229371c9d4SSatish Balay } 22239371c9d4SSatish Balay if (innerislist) { 22244f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22259371c9d4SSatish Balay *innerislist = NULL; 22269371c9d4SSatish Balay } 22279371c9d4SSatish Balay if (outerislist) { 22284f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22299371c9d4SSatish Balay *outerislist = NULL; 22309371c9d4SSatish Balay } 22319371c9d4SSatish Balay if (dmlist) { 22324f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22339371c9d4SSatish Balay *dmlist = NULL; 22349371c9d4SSatish Balay } 2235f3f0edfdSDmitry Karpeev /* 2236f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2237f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2238f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2239f3f0edfdSDmitry Karpeev */ 22407a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 224116621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2242dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 224314a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2244f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2245be081cd6SPeter Brune for (i = 0; i < l; i++) { 2246be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22479566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2248be081cd6SPeter Brune } 2249648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2250e7c4fc90SDmitry Karpeev } 225114a18fd3SPeter Brune } 2252bb7acecfSBarry Smith if (n) *n = l; 225314a18fd3SPeter Brune } 22543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2255e30e807fSPeter Brune } 2256e30e807fSPeter Brune 2257e30e807fSPeter Brune /*@C 225873ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 225973ff1848SBarry Smith `DMCreateDomainDecomposition()` 2260e30e807fSPeter Brune 226120f4b53cSBarry Smith Not Collective 2262e30e807fSPeter Brune 2263e30e807fSPeter Brune Input Parameters: 2264bb7acecfSBarry Smith + dm - the `DM` object 226573ff1848SBarry Smith . n - the number of subdomains 2266e30e807fSPeter Brune - subdms - the local subdomains 2267e30e807fSPeter Brune 2268e30e807fSPeter Brune Output Parameters: 22696b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2270e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2271e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2272e30e807fSPeter Brune 227320f4b53cSBarry Smith Level: developer 227420f4b53cSBarry Smith 2275bb7acecfSBarry Smith Note: 2276bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2277e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2278e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2279e30e807fSPeter Brune solution and residual data. 2280e30e807fSPeter Brune 228173ff1848SBarry Smith Developer Note: 2282a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2283a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2284bb7acecfSBarry Smith 22851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2286e30e807fSPeter Brune @*/ 22875d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2288d71ae5a4SJacob Faibussowitsch { 2289e30e807fSPeter Brune PetscFunctionBegin; 2290e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22914f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2292dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2294e7c4fc90SDmitry Karpeev } 2295e7c4fc90SDmitry Karpeev 229647c6ae99SBarry Smith /*@ 2297bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 229847c6ae99SBarry Smith 229920f4b53cSBarry Smith Collective 230047c6ae99SBarry Smith 2301d8d19677SJose E. Roman Input Parameters: 2302bb7acecfSBarry Smith + dm - the `DM` object 2303bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 230447c6ae99SBarry Smith 230547c6ae99SBarry Smith Output Parameter: 230620f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2307ae0a1c52SMatthew G Knepley 230820f4b53cSBarry Smith Options Database Key: 2309412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2310412e9a14SMatthew G. Knepley 231147c6ae99SBarry Smith Level: developer 231247c6ae99SBarry Smith 231320f4b53cSBarry Smith Note: 231420f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 231520f4b53cSBarry Smith 231673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 231773ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 231847c6ae99SBarry Smith @*/ 2319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2320d71ae5a4SJacob Faibussowitsch { 2321c833c3b5SJed Brown DMRefineHookLink link; 232247c6ae99SBarry Smith 232347c6ae99SBarry Smith PetscFunctionBegin; 2324732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2326dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23274057135bSMatthew G Knepley if (*dmf) { 232843842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23298865f1eaSKarl Rupp 23309566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23318865f1eaSKarl Rupp 2332644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23330598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2334656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23358865f1eaSKarl Rupp 23369566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2337c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23381baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2339c833c3b5SJed Brown } 2340c833c3b5SJed Brown } 23419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2343c833c3b5SJed Brown } 2344c833c3b5SJed Brown 2345bb9467b5SJed Brown /*@C 2346c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2347c833c3b5SJed Brown 234820f4b53cSBarry Smith Logically Collective; No Fortran Support 2349c833c3b5SJed Brown 23504165533cSJose E. Roman Input Parameters: 2351bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2352bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2353f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 235420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2355c833c3b5SJed Brown 235620f4b53cSBarry Smith Calling sequence of `refinehook`: 2357bb7acecfSBarry Smith + coarse - coarse level `DM` 2358bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2359c833c3b5SJed Brown - ctx - optional user-defined function context 2360c833c3b5SJed Brown 236120f4b53cSBarry Smith Calling sequence of `interphook`: 2362bb7acecfSBarry Smith + coarse - coarse level `DM` 2363c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2364bb7acecfSBarry Smith . fine - fine level `DM` to update 2365c833c3b5SJed Brown - ctx - optional user-defined function context 2366c833c3b5SJed Brown 2367c833c3b5SJed Brown Level: advanced 2368c833c3b5SJed Brown 2369c833c3b5SJed Brown Notes: 2370bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2371bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2372bb7acecfSBarry Smith 2373bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2374c833c3b5SJed Brown 2375c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2376c833c3b5SJed Brown 23771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2378c833c3b5SJed Brown @*/ 2379a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2380d71ae5a4SJacob Faibussowitsch { 2381c833c3b5SJed Brown DMRefineHookLink link, *p; 2382c833c3b5SJed Brown 2383c833c3b5SJed Brown PetscFunctionBegin; 2384c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23853d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23863ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23873d8e3701SJed Brown } 23889566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2389c833c3b5SJed Brown link->refinehook = refinehook; 2390c833c3b5SJed Brown link->interphook = interphook; 2391c833c3b5SJed Brown link->ctx = ctx; 23920298fd71SBarry Smith link->next = NULL; 2393c833c3b5SJed Brown *p = link; 23943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2395c833c3b5SJed Brown } 2396c833c3b5SJed Brown 23973d8e3701SJed Brown /*@C 2398bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2399bb7acecfSBarry Smith a nonlinear problem to a finer grid 24003d8e3701SJed Brown 240120f4b53cSBarry Smith Logically Collective; No Fortran Support 24023d8e3701SJed Brown 24034165533cSJose E. Roman Input Parameters: 2404bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2405bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2406bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 240720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24083d8e3701SJed Brown 24093d8e3701SJed Brown Level: advanced 24103d8e3701SJed Brown 2411bb7acecfSBarry Smith Note: 24123d8e3701SJed Brown This function does nothing if the hook is not in the list. 24133d8e3701SJed Brown 24141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24153d8e3701SJed Brown @*/ 2416d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2417d71ae5a4SJacob Faibussowitsch { 24183d8e3701SJed Brown DMRefineHookLink link, *p; 24193d8e3701SJed Brown 24203d8e3701SJed Brown PetscFunctionBegin; 24213d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24223d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24233d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24243d8e3701SJed Brown link = *p; 24253d8e3701SJed Brown *p = link->next; 24269566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24273d8e3701SJed Brown break; 24283d8e3701SJed Brown } 24293d8e3701SJed Brown } 24303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24313d8e3701SJed Brown } 24323d8e3701SJed Brown 2433c833c3b5SJed Brown /*@ 2434bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2435c833c3b5SJed Brown 2436c833c3b5SJed Brown Collective if any hooks are 2437c833c3b5SJed Brown 24384165533cSJose E. Roman Input Parameters: 2439bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2440bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2441bb7acecfSBarry Smith - fine - finer `DM` to update 2442c833c3b5SJed Brown 2443c833c3b5SJed Brown Level: developer 2444c833c3b5SJed Brown 244573ff1848SBarry Smith Developer Note: 2446bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2447bb7acecfSBarry Smith an API with consistent terminology. 2448bb7acecfSBarry Smith 24491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2450c833c3b5SJed Brown @*/ 2451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2452d71ae5a4SJacob Faibussowitsch { 2453c833c3b5SJed Brown DMRefineHookLink link; 2454c833c3b5SJed Brown 2455c833c3b5SJed Brown PetscFunctionBegin; 2456c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24571baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24584057135bSMatthew G Knepley } 24593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 246047c6ae99SBarry Smith } 246147c6ae99SBarry Smith 2462eb3f98d2SBarry Smith /*@ 24631f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24641f3379b2SToby Isaac 246520f4b53cSBarry Smith Collective 24661f3379b2SToby Isaac 24674165533cSJose E. Roman Input Parameters: 2468bb7acecfSBarry Smith + coarse - coarse `DM` 2469bb7acecfSBarry Smith . fine - fine `DM` 2470bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2471bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2472bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24731f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24741f3379b2SToby Isaac 24754165533cSJose E. Roman Output Parameter: 24761f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24771f3379b2SToby Isaac 24781f3379b2SToby Isaac Level: developer 24791f3379b2SToby Isaac 2480bb7acecfSBarry Smith Note: 2481bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24821f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24831f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24841f3379b2SToby Isaac slope-limiting reconstruction. 24851f3379b2SToby Isaac 248673ff1848SBarry Smith Developer Note: 2487bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2488bb7acecfSBarry Smith 24891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24901f3379b2SToby Isaac @*/ 2491d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2492d71ae5a4SJacob Faibussowitsch { 24931f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24941f3379b2SToby Isaac 24951f3379b2SToby Isaac PetscFunctionBegin; 24961f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24971f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24981f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24991f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 25001f3379b2SToby Isaac 25019566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25021f3379b2SToby Isaac if (interpsol) { 25039566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25041f3379b2SToby Isaac } else if (interp) { 25059566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 250698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25081f3379b2SToby Isaac } 25091f3379b2SToby Isaac 25101f3379b2SToby Isaac /*@ 2511bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2512eb3f98d2SBarry Smith 2513eb3f98d2SBarry Smith Not Collective 2514eb3f98d2SBarry Smith 2515eb3f98d2SBarry Smith Input Parameter: 2516bb7acecfSBarry Smith . dm - the `DM` object 2517eb3f98d2SBarry Smith 2518eb3f98d2SBarry Smith Output Parameter: 2519eb3f98d2SBarry Smith . level - number of refinements 2520eb3f98d2SBarry Smith 2521eb3f98d2SBarry Smith Level: developer 2522eb3f98d2SBarry Smith 2523bb7acecfSBarry Smith Note: 2524bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2525bb7acecfSBarry Smith 25261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2527eb3f98d2SBarry Smith @*/ 2528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2529d71ae5a4SJacob Faibussowitsch { 2530eb3f98d2SBarry Smith PetscFunctionBegin; 2531eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2532eb3f98d2SBarry Smith *level = dm->levelup; 25333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2534eb3f98d2SBarry Smith } 2535eb3f98d2SBarry Smith 2536fef3a512SBarry Smith /*@ 2537bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2538fef3a512SBarry Smith 2539fef3a512SBarry Smith Not Collective 2540fef3a512SBarry Smith 2541d8d19677SJose E. Roman Input Parameters: 2542bb7acecfSBarry Smith + dm - the `DM` object 2543fef3a512SBarry Smith - level - number of refinements 2544fef3a512SBarry Smith 2545fef3a512SBarry Smith Level: advanced 2546fef3a512SBarry Smith 254795452b02SPatrick Sanan Notes: 2548bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2549fef3a512SBarry Smith 2550bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2551bb7acecfSBarry Smith 25521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2553fef3a512SBarry Smith @*/ 2554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2555d71ae5a4SJacob Faibussowitsch { 2556fef3a512SBarry Smith PetscFunctionBegin; 2557fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2558fef3a512SBarry Smith dm->levelup = level; 25593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2560fef3a512SBarry Smith } 2561fef3a512SBarry Smith 2562d410b0cfSMatthew G. Knepley /*@ 2563bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2564d410b0cfSMatthew G. Knepley 256520f4b53cSBarry Smith Collective 2566d410b0cfSMatthew G. Knepley 2567f1a722f8SMatthew G. Knepley Input Parameters: 2568bb7acecfSBarry Smith + dm - the `DM` object 2569d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2570d410b0cfSMatthew G. Knepley 2571d410b0cfSMatthew G. Knepley Output Parameter: 257220f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2573d410b0cfSMatthew G. Knepley 2574d410b0cfSMatthew G. Knepley Level: developer 2575d410b0cfSMatthew G. Knepley 257620f4b53cSBarry Smith Note: 257720f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 257820f4b53cSBarry Smith 25791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2580d410b0cfSMatthew G. Knepley @*/ 2581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2582d71ae5a4SJacob Faibussowitsch { 2583d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2584d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2585dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2586d410b0cfSMatthew G. Knepley if (*dme) { 2587d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25889566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2589d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25909566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2591d410b0cfSMatthew G. Knepley } 25923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2593d410b0cfSMatthew G. Knepley } 2594d410b0cfSMatthew G. Knepley 2595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2596d71ae5a4SJacob Faibussowitsch { 2597ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2598ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25994f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2600ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2602ca3d3a14SMatthew G. Knepley } 2603ca3d3a14SMatthew G. Knepley 2604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2605d71ae5a4SJacob Faibussowitsch { 2606ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2607ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26084f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2609ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2611ca3d3a14SMatthew G. Knepley } 2612ca3d3a14SMatthew G. Knepley 2613ca3d3a14SMatthew G. Knepley /*@ 2614bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2615ca3d3a14SMatthew G. Knepley 2616ca3d3a14SMatthew G. Knepley Input Parameter: 261720f4b53cSBarry Smith . dm - The `DM` 2618ca3d3a14SMatthew G. Knepley 2619ca3d3a14SMatthew G. Knepley Output Parameter: 262020f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2621ca3d3a14SMatthew G. Knepley 2622ca3d3a14SMatthew G. Knepley Level: developer 2623ca3d3a14SMatthew G. Knepley 26241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2625ca3d3a14SMatthew G. Knepley @*/ 2626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2627d71ae5a4SJacob Faibussowitsch { 2628ca3d3a14SMatthew G. Knepley Vec tv; 2629ca3d3a14SMatthew G. Knepley 2630ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2631ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26324f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26339566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2634ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2636ca3d3a14SMatthew G. Knepley } 2637ca3d3a14SMatthew G. Knepley 2638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2639d71ae5a4SJacob Faibussowitsch { 2640ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2641ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2642ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2643ca3d3a14SMatthew G. Knepley 2644ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26459566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26469566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26499566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26519566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2653ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2655ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2656ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2657ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2659ca3d3a14SMatthew G. Knepley if (!dof) continue; 26609566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26619566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2662ca3d3a14SMatthew G. Knepley } 2663ca3d3a14SMatthew G. Knepley } 26649566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26659566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26669566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2667ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2668ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2670ca3d3a14SMatthew G. Knepley if (dof) { 2671ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2672ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2673ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2674ca3d3a14SMatthew G. Knepley 2675ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26769566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26779566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2679ca3d3a14SMatthew G. Knepley } 2680ca3d3a14SMatthew G. Knepley } 2681ca3d3a14SMatthew G. Knepley } 26829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2684ca3d3a14SMatthew G. Knepley } 2685ca3d3a14SMatthew G. Knepley 2686d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2687d71ae5a4SJacob Faibussowitsch { 2688ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2689ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2690ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2691ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2692ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2693ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2694ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26959566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2697ca3d3a14SMatthew G. Knepley } 2698ca3d3a14SMatthew G. Knepley 2699bb9467b5SJed Brown /*@C 2700bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2701baf369e7SPeter Brune 270220f4b53cSBarry Smith Logically Collective 2703baf369e7SPeter Brune 27044165533cSJose E. Roman Input Parameters: 2705bb7acecfSBarry Smith + dm - the `DM` 2706bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2707bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 270820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2709baf369e7SPeter Brune 271020f4b53cSBarry Smith Calling sequence of `beginhook`: 2711a4e35b19SJacob Faibussowitsch + dm - global `DM` 2712baf369e7SPeter Brune . g - global vector 2713baf369e7SPeter Brune . mode - mode 2714baf369e7SPeter Brune . l - local vector 2715baf369e7SPeter Brune - ctx - optional user-defined function context 2716baf369e7SPeter Brune 271720f4b53cSBarry Smith Calling sequence of `endhook`: 2718a4e35b19SJacob Faibussowitsch + dm - global `DM` 2719a4e35b19SJacob Faibussowitsch . g - global vector 2720a4e35b19SJacob Faibussowitsch . mode - mode 2721a4e35b19SJacob Faibussowitsch . l - local vector 2722baf369e7SPeter Brune - ctx - optional user-defined function context 2723baf369e7SPeter Brune 2724baf369e7SPeter Brune Level: advanced 2725baf369e7SPeter Brune 2726bb7acecfSBarry Smith Note: 2727bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2728bb7acecfSBarry Smith 27291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2730baf369e7SPeter Brune @*/ 2731a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2732d71ae5a4SJacob Faibussowitsch { 2733baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2734baf369e7SPeter Brune 2735baf369e7SPeter Brune PetscFunctionBegin; 2736baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2737baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27389566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2739baf369e7SPeter Brune link->beginhook = beginhook; 2740baf369e7SPeter Brune link->endhook = endhook; 2741baf369e7SPeter Brune link->ctx = ctx; 27420298fd71SBarry Smith link->next = NULL; 2743baf369e7SPeter Brune *p = link; 27443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2745baf369e7SPeter Brune } 2746baf369e7SPeter Brune 2747d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2748d71ae5a4SJacob Faibussowitsch { 27494c274da1SToby Isaac Mat cMat; 275079769bd5SJed Brown Vec cVec, cBias; 27514c274da1SToby Isaac PetscSection section, cSec; 27524c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27534c274da1SToby Isaac 27544c274da1SToby Isaac PetscFunctionBegin; 2755a4e35b19SJacob Faibussowitsch (void)g; 2756a4e35b19SJacob Faibussowitsch (void)ctx; 27574c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27589566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27594c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27605db9a05bSToby Isaac PetscInt nRows; 27615db9a05bSToby Isaac 27629566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27633ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27659566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27669566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27679566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27694c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27714c274da1SToby Isaac if (dof) { 27724c274da1SToby Isaac PetscScalar *vals; 27739566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27749566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27754c274da1SToby Isaac } 27764c274da1SToby Isaac } 27779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27784c274da1SToby Isaac } 27793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27804c274da1SToby Isaac } 27814c274da1SToby Isaac 278247c6ae99SBarry Smith /*@ 278301729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 278401729b5cSPatrick Sanan 278520f4b53cSBarry Smith Neighbor-wise Collective 278601729b5cSPatrick Sanan 278701729b5cSPatrick Sanan Input Parameters: 2788bb7acecfSBarry Smith + dm - the `DM` object 278901729b5cSPatrick Sanan . g - the global vector 2790bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 279101729b5cSPatrick Sanan - l - the local vector 279201729b5cSPatrick Sanan 279320f4b53cSBarry Smith Level: beginner 279420f4b53cSBarry Smith 279501729b5cSPatrick Sanan Notes: 2796bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2797bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2798bb7acecfSBarry Smith 2799bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 280001729b5cSPatrick Sanan 28011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 280260225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2803bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 280401729b5cSPatrick Sanan @*/ 2805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2806d71ae5a4SJacob Faibussowitsch { 280701729b5cSPatrick Sanan PetscFunctionBegin; 28089566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28099566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 281101729b5cSPatrick Sanan } 281201729b5cSPatrick Sanan 281301729b5cSPatrick Sanan /*@ 281447c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 281547c6ae99SBarry Smith 281620f4b53cSBarry Smith Neighbor-wise Collective 281747c6ae99SBarry Smith 281847c6ae99SBarry Smith Input Parameters: 2819bb7acecfSBarry Smith + dm - the `DM` object 282047c6ae99SBarry Smith . g - the global vector 2821bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 282247c6ae99SBarry Smith - l - the local vector 282347c6ae99SBarry Smith 282401729b5cSPatrick Sanan Level: intermediate 282547c6ae99SBarry Smith 2826bb7acecfSBarry Smith Notes: 2827bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2828bb7acecfSBarry Smith 2829bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2830bb7acecfSBarry Smith 2831bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2832bb7acecfSBarry Smith 2833bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2834bb7acecfSBarry Smith 283560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 283647c6ae99SBarry Smith @*/ 2837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2838d71ae5a4SJacob Faibussowitsch { 28397128ae9fSMatthew G Knepley PetscSF sf; 2840baf369e7SPeter Brune DMGlobalToLocalHookLink link; 284147c6ae99SBarry Smith 284247c6ae99SBarry Smith PetscFunctionBegin; 2843171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2844baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28451baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2846baf369e7SPeter Brune } 28479566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28487128ae9fSMatthew G Knepley if (sf) { 2849ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2850ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2851d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28527128ae9fSMatthew G Knepley 28537a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28549566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28559566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28597128ae9fSMatthew G Knepley } else { 2860fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28617128ae9fSMatthew G Knepley } 28623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 286347c6ae99SBarry Smith } 286447c6ae99SBarry Smith 286547c6ae99SBarry Smith /*@ 286647c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 286747c6ae99SBarry Smith 286820f4b53cSBarry Smith Neighbor-wise Collective 286947c6ae99SBarry Smith 287047c6ae99SBarry Smith Input Parameters: 2871bb7acecfSBarry Smith + dm - the `DM` object 287247c6ae99SBarry Smith . g - the global vector 2873bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 287447c6ae99SBarry Smith - l - the local vector 287547c6ae99SBarry Smith 287601729b5cSPatrick Sanan Level: intermediate 287747c6ae99SBarry Smith 2878bb7acecfSBarry Smith Note: 2879bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2880bb7acecfSBarry Smith 288160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 288247c6ae99SBarry Smith @*/ 2883d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2884d71ae5a4SJacob Faibussowitsch { 28857128ae9fSMatthew G Knepley PetscSF sf; 2886ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2887ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2888ca3d3a14SMatthew G. Knepley PetscBool transform; 2889baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2890d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 289147c6ae99SBarry Smith 289247c6ae99SBarry Smith PetscFunctionBegin; 2893171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28949566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28959566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28967128ae9fSMatthew G Knepley if (sf) { 28977a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28987128ae9fSMatthew G Knepley 28999566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 29009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 29019566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29029566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29039566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29049566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29057128ae9fSMatthew G Knepley } else { 2906fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29077128ae9fSMatthew G Knepley } 29089566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2909baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29109566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2911baf369e7SPeter Brune } 29123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 291347c6ae99SBarry Smith } 291447c6ae99SBarry Smith 2915d4d07f1eSToby Isaac /*@C 2916d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2917d4d07f1eSToby Isaac 291820f4b53cSBarry Smith Logically Collective 2919d4d07f1eSToby Isaac 29204165533cSJose E. Roman Input Parameters: 2921bb7acecfSBarry Smith + dm - the `DM` 2922bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2923bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 292420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2925d4d07f1eSToby Isaac 292620f4b53cSBarry Smith Calling sequence of `beginhook`: 2927a4e35b19SJacob Faibussowitsch + global - global `DM` 2928d4d07f1eSToby Isaac . l - local vector 2929d4d07f1eSToby Isaac . mode - mode 2930d4d07f1eSToby Isaac . g - global vector 2931d4d07f1eSToby Isaac - ctx - optional user-defined function context 2932d4d07f1eSToby Isaac 293320f4b53cSBarry Smith Calling sequence of `endhook`: 2934bb7acecfSBarry Smith + global - global `DM` 2935d4d07f1eSToby Isaac . l - local vector 2936d4d07f1eSToby Isaac . mode - mode 2937d4d07f1eSToby Isaac . g - global vector 2938d4d07f1eSToby Isaac - ctx - optional user-defined function context 2939d4d07f1eSToby Isaac 2940d4d07f1eSToby Isaac Level: advanced 2941d4d07f1eSToby Isaac 29421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2943d4d07f1eSToby Isaac @*/ 2944a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2945d71ae5a4SJacob Faibussowitsch { 2946d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2947d4d07f1eSToby Isaac 2948d4d07f1eSToby Isaac PetscFunctionBegin; 2949d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2950d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29519566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2952d4d07f1eSToby Isaac link->beginhook = beginhook; 2953d4d07f1eSToby Isaac link->endhook = endhook; 2954d4d07f1eSToby Isaac link->ctx = ctx; 2955d4d07f1eSToby Isaac link->next = NULL; 2956d4d07f1eSToby Isaac *p = link; 29573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2958d4d07f1eSToby Isaac } 2959d4d07f1eSToby Isaac 2960d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2961d71ae5a4SJacob Faibussowitsch { 29624c274da1SToby Isaac PetscFunctionBegin; 2963a4e35b19SJacob Faibussowitsch (void)g; 2964a4e35b19SJacob Faibussowitsch (void)ctx; 29654c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29662b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29672b6b7d09SToby Isaac Mat cMat; 29682b6b7d09SToby Isaac Vec cVec; 29695db9a05bSToby Isaac PetscInt nRows; 29702b6b7d09SToby Isaac PetscSection section, cSec; 29712b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29722b6b7d09SToby Isaac 29732b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29742b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29755db9a05bSToby Isaac 29769566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29773ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29789566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29799566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29814c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29834c274da1SToby Isaac if (dof) { 29844c274da1SToby Isaac PetscInt d; 29854c274da1SToby Isaac PetscScalar *vals; 29869566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29879566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29884c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29894c274da1SToby Isaac * we just extracted */ 2990ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29914c274da1SToby Isaac } 29924c274da1SToby Isaac } 29939566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29954c274da1SToby Isaac } 29963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29974c274da1SToby Isaac } 299801729b5cSPatrick Sanan /*@ 299901729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 300001729b5cSPatrick Sanan 300120f4b53cSBarry Smith Neighbor-wise Collective 300201729b5cSPatrick Sanan 300301729b5cSPatrick Sanan Input Parameters: 3004bb7acecfSBarry Smith + dm - the `DM` object 300501729b5cSPatrick Sanan . l - the local vector 3006bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 300701729b5cSPatrick Sanan - g - the global vector 300801729b5cSPatrick Sanan 300920f4b53cSBarry Smith Level: beginner 301020f4b53cSBarry Smith 301101729b5cSPatrick Sanan Notes: 301201729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3013bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 301401729b5cSPatrick Sanan 3015bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3016bb7acecfSBarry Smith 3017bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3018bb7acecfSBarry Smith 3019bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 302001729b5cSPatrick Sanan 30211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 302201729b5cSPatrick Sanan @*/ 3023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3024d71ae5a4SJacob Faibussowitsch { 302501729b5cSPatrick Sanan PetscFunctionBegin; 30269566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30279566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 302901729b5cSPatrick Sanan } 30304c274da1SToby Isaac 303147c6ae99SBarry Smith /*@ 303201729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30339a42bb27SBarry Smith 303420f4b53cSBarry Smith Neighbor-wise Collective 30359a42bb27SBarry Smith 30369a42bb27SBarry Smith Input Parameters: 3037bb7acecfSBarry Smith + dm - the `DM` object 3038f6813fd5SJed Brown . l - the local vector 3039aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30401eb28f2eSBarry Smith - g - the global vector 30419a42bb27SBarry Smith 304220f4b53cSBarry Smith Level: intermediate 304320f4b53cSBarry Smith 304495452b02SPatrick Sanan Notes: 3045bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3046bb7acecfSBarry Smith 3047bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3048bb7acecfSBarry Smith 3049bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3050bb7acecfSBarry Smith 3051bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3052bb7acecfSBarry Smith 3053bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30549a42bb27SBarry Smith 30551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30569a42bb27SBarry Smith @*/ 3057d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3058d71ae5a4SJacob Faibussowitsch { 30597128ae9fSMatthew G Knepley PetscSF sf; 306084330215SMatthew G. Knepley PetscSection s, gs; 3061d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3062ca3d3a14SMatthew G. Knepley Vec tmpl; 3063ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3064ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3065fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3066d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30679a42bb27SBarry Smith 30689a42bb27SBarry Smith PetscFunctionBegin; 3069171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3070d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30711baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3072d4d07f1eSToby Isaac } 30739566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30749566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30759566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30767128ae9fSMatthew G Knepley switch (mode) { 30777128ae9fSMatthew G Knepley case INSERT_VALUES: 30787128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3079d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3080d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3081d71ae5a4SJacob Faibussowitsch break; 30827128ae9fSMatthew G Knepley case ADD_VALUES: 30837128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3084d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3085d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3086d71ae5a4SJacob Faibussowitsch break; 3087d71ae5a4SJacob Faibussowitsch default: 3088d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30897128ae9fSMatthew G Knepley } 3090ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30919566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3092ca3d3a14SMatthew G. Knepley if (transform) { 30939566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30949566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30959566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3097fa88e482SJed Brown } else if (isInsert) { 30989566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3099fa88e482SJed Brown } else { 31009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3101fa88e482SJed Brown l_inplace = PETSC_TRUE; 3102ca3d3a14SMatthew G. Knepley } 3103fa88e482SJed Brown if (s && isInsert) { 31049566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3105fa88e482SJed Brown } else { 31069566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3107fa88e482SJed Brown g_inplace = PETSC_TRUE; 3108fa88e482SJed Brown } 3109ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 311184330215SMatthew G. Knepley } else if (s && isInsert) { 311284330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 311384330215SMatthew G. Knepley 31149566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31169566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 311784330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3118b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 311984330215SMatthew G. Knepley 31209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3126b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 312703442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31287a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3129b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3130b3b16f48SMatthew G. Knepley if (!gcdof) { 313184330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3132b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3133b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 313484330215SMatthew G. Knepley const PetscInt *cdofs; 313584330215SMatthew G. Knepley PetscInt cind = 0; 313684330215SMatthew G. Knepley 31379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3138b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31399371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31409371c9d4SSatish Balay ++cind; 31419371c9d4SSatish Balay continue; 31429371c9d4SSatish Balay } 3143b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 314484330215SMatthew G. Knepley } 31457a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 314684330215SMatthew G. Knepley } 3147ca3d3a14SMatthew G. Knepley } 3148fa88e482SJed Brown if (g_inplace) { 31499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3150fa88e482SJed Brown } else { 31519566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3152fa88e482SJed Brown } 3153ca3d3a14SMatthew G. Knepley if (transform) { 31549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31559566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3156fa88e482SJed Brown } else if (l_inplace) { 31579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3158ca3d3a14SMatthew G. Knepley } else { 31599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3160ca3d3a14SMatthew G. Knepley } 31617128ae9fSMatthew G Knepley } else { 3162fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31637128ae9fSMatthew G Knepley } 31643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31659a42bb27SBarry Smith } 31669a42bb27SBarry Smith 31679a42bb27SBarry Smith /*@ 31689a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 316947c6ae99SBarry Smith 317020f4b53cSBarry Smith Neighbor-wise Collective 317147c6ae99SBarry Smith 317247c6ae99SBarry Smith Input Parameters: 3173bb7acecfSBarry Smith + dm - the `DM` object 3174f6813fd5SJed Brown . l - the local vector 3175bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3176f6813fd5SJed Brown - g - the global vector 317747c6ae99SBarry Smith 317801729b5cSPatrick Sanan Level: intermediate 317947c6ae99SBarry Smith 3180bb7acecfSBarry Smith Note: 3181bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3182bb7acecfSBarry Smith 318360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 318447c6ae99SBarry Smith @*/ 3185d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3186d71ae5a4SJacob Faibussowitsch { 31877128ae9fSMatthew G Knepley PetscSF sf; 318884330215SMatthew G. Knepley PetscSection s; 3189d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3190ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 319147c6ae99SBarry Smith 319247c6ae99SBarry Smith PetscFunctionBegin; 3193171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31949566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31967128ae9fSMatthew G Knepley switch (mode) { 31977128ae9fSMatthew G Knepley case INSERT_VALUES: 3198d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3199d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3200d71ae5a4SJacob Faibussowitsch break; 32017128ae9fSMatthew G Knepley case ADD_VALUES: 3202d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3203d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3204d71ae5a4SJacob Faibussowitsch break; 3205d71ae5a4SJacob Faibussowitsch default: 3206d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32077128ae9fSMatthew G Knepley } 320884330215SMatthew G. Knepley if (sf && !isInsert) { 3209ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3210ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3211ca3d3a14SMatthew G. Knepley Vec tmpl; 321284330215SMatthew G. Knepley 32139566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3214ca3d3a14SMatthew G. Knepley if (transform) { 32159566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32169566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3217ca3d3a14SMatthew G. Knepley } else { 32189566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3219ca3d3a14SMatthew G. Knepley } 32209566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32219566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3222ca3d3a14SMatthew G. Knepley if (transform) { 32239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32249566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3225ca3d3a14SMatthew G. Knepley } else { 32269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3227ca3d3a14SMatthew G. Knepley } 32289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 322984330215SMatthew G. Knepley } else if (s && isInsert) { 32307128ae9fSMatthew G Knepley } else { 3231fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32327128ae9fSMatthew G Knepley } 3233d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32349566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3235d4d07f1eSToby Isaac } 32363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 323747c6ae99SBarry Smith } 323847c6ae99SBarry Smith 3239f089877aSRichard Tran Mills /*@ 3240a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3241a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3242a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3243f089877aSRichard Tran Mills 324420f4b53cSBarry Smith Neighbor-wise Collective 3245f089877aSRichard Tran Mills 3246f089877aSRichard Tran Mills Input Parameters: 3247bb7acecfSBarry Smith + dm - the `DM` object 3248bc0a1609SRichard Tran Mills . g - the original local vector 3249bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3250f089877aSRichard Tran Mills 3251bc0a1609SRichard Tran Mills Output Parameter: 3252bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3253f089877aSRichard Tran Mills 3254f089877aSRichard Tran Mills Level: intermediate 3255f089877aSRichard Tran Mills 325673ff1848SBarry Smith Note: 3257a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3258a4e35b19SJacob Faibussowitsch 325960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3260f089877aSRichard Tran Mills @*/ 3261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3262d71ae5a4SJacob Faibussowitsch { 3263f089877aSRichard Tran Mills PetscFunctionBegin; 3264f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32659f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32669f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32679f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3269f089877aSRichard Tran Mills } 3270f089877aSRichard Tran Mills 3271f089877aSRichard Tran Mills /*@ 3272bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3273bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3274f089877aSRichard Tran Mills 327520f4b53cSBarry Smith Neighbor-wise Collective 3276f089877aSRichard Tran Mills 3277f089877aSRichard Tran Mills Input Parameters: 327860225df5SJacob Faibussowitsch + dm - the `DM` object 3279bc0a1609SRichard Tran Mills . g - the original local vector 3280bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3281f089877aSRichard Tran Mills 3282bc0a1609SRichard Tran Mills Output Parameter: 3283bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3284f089877aSRichard Tran Mills 3285f089877aSRichard Tran Mills Level: intermediate 3286f089877aSRichard Tran Mills 328760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3288f089877aSRichard Tran Mills @*/ 3289d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3290d71ae5a4SJacob Faibussowitsch { 3291f089877aSRichard Tran Mills PetscFunctionBegin; 3292f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32939f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32949f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32959f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3297f089877aSRichard Tran Mills } 3298f089877aSRichard Tran Mills 329947c6ae99SBarry Smith /*@ 3300bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 330147c6ae99SBarry Smith 330220f4b53cSBarry Smith Collective 330347c6ae99SBarry Smith 3304d8d19677SJose E. Roman Input Parameters: 3305bb7acecfSBarry Smith + dm - the `DM` object 330620f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 330747c6ae99SBarry Smith 330847c6ae99SBarry Smith Output Parameter: 3309bb7acecfSBarry Smith . dmc - the coarsened `DM` 331047c6ae99SBarry Smith 331147c6ae99SBarry Smith Level: developer 331247c6ae99SBarry Smith 331373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 331473ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 331547c6ae99SBarry Smith @*/ 3316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3317d71ae5a4SJacob Faibussowitsch { 3318b17ce1afSJed Brown DMCoarsenHookLink link; 331947c6ae99SBarry Smith 332047c6ae99SBarry Smith PetscFunctionBegin; 3321171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3323dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3324b9d85ea2SLisandro Dalcin if (*dmc) { 3325a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33269566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 332743842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33289566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3329644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33300598a293SJed Brown (*dmc)->levelup = dm->levelup; 3331656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33329566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3333b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33349566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3335b17ce1afSJed Brown } 3336b9d85ea2SLisandro Dalcin } 33379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33387a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3340b17ce1afSJed Brown } 3341b17ce1afSJed Brown 3342bb9467b5SJed Brown /*@C 3343b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3344b17ce1afSJed Brown 334520f4b53cSBarry Smith Logically Collective; No Fortran Support 3346b17ce1afSJed Brown 33474165533cSJose E. Roman Input Parameters: 3348bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3349b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3350bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 335120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3352b17ce1afSJed Brown 335320f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3354bb7acecfSBarry Smith + fine - fine level `DM` 3355bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3356b17ce1afSJed Brown - ctx - optional user-defined function context 3357b17ce1afSJed Brown 335820f4b53cSBarry Smith Calling sequence of `restricthook`: 3359bb7acecfSBarry Smith + fine - fine level `DM` 3360bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3361c833c3b5SJed Brown . rscale - scaling vector for restriction 3362c833c3b5SJed Brown . inject - matrix restricting by injection 3363b17ce1afSJed Brown . coarse - coarse level DM to update 3364b17ce1afSJed Brown - ctx - optional user-defined function context 3365b17ce1afSJed Brown 3366b17ce1afSJed Brown Level: advanced 3367b17ce1afSJed Brown 3368b17ce1afSJed Brown Notes: 3369bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3370b17ce1afSJed Brown 3371b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3372b17ce1afSJed Brown 3373b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3374bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3375b17ce1afSJed Brown 3376bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3377bb7acecfSBarry Smith 33781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3379b17ce1afSJed Brown @*/ 3380a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3381d71ae5a4SJacob Faibussowitsch { 3382b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3383b17ce1afSJed Brown 3384b17ce1afSJed Brown PetscFunctionBegin; 3385b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33861e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33873ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33881e3d8eccSJed Brown } 33899566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3390b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3391b17ce1afSJed Brown link->restricthook = restricthook; 3392b17ce1afSJed Brown link->ctx = ctx; 33930298fd71SBarry Smith link->next = NULL; 3394b17ce1afSJed Brown *p = link; 33953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3396b17ce1afSJed Brown } 3397b17ce1afSJed Brown 3398dc822a44SJed Brown /*@C 3399bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3400dc822a44SJed Brown 340120f4b53cSBarry Smith Logically Collective; No Fortran Support 3402dc822a44SJed Brown 34034165533cSJose E. Roman Input Parameters: 3404bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3405dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3406bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 340720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3408dc822a44SJed Brown 3409dc822a44SJed Brown Level: advanced 3410dc822a44SJed Brown 341173ff1848SBarry Smith Notes: 341273ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 341373ff1848SBarry Smith 341473ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3415dc822a44SJed Brown 34161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3417dc822a44SJed Brown @*/ 3418d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3419d71ae5a4SJacob Faibussowitsch { 3420dc822a44SJed Brown DMCoarsenHookLink link, *p; 3421dc822a44SJed Brown 3422dc822a44SJed Brown PetscFunctionBegin; 3423dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3424dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3425dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3426dc822a44SJed Brown link = *p; 3427dc822a44SJed Brown *p = link->next; 34289566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3429dc822a44SJed Brown break; 3430dc822a44SJed Brown } 3431dc822a44SJed Brown } 34323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3433dc822a44SJed Brown } 3434dc822a44SJed Brown 3435b17ce1afSJed Brown /*@ 3436bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3437b17ce1afSJed Brown 3438b17ce1afSJed Brown Collective if any hooks are 3439b17ce1afSJed Brown 34404165533cSJose E. Roman Input Parameters: 3441bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3442bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3443e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3444bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 344520f4b53cSBarry Smith - coarse - coarser `DM` to update 3446b17ce1afSJed Brown 3447b17ce1afSJed Brown Level: developer 3448b17ce1afSJed Brown 344973ff1848SBarry Smith Developer Note: 3450bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3451bb7acecfSBarry Smith 34521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3453b17ce1afSJed Brown @*/ 3454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3455d71ae5a4SJacob Faibussowitsch { 3456b17ce1afSJed Brown DMCoarsenHookLink link; 3457b17ce1afSJed Brown 3458b17ce1afSJed Brown PetscFunctionBegin; 3459b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34601baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3461b17ce1afSJed Brown } 34623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 346347c6ae99SBarry Smith } 346447c6ae99SBarry Smith 3465bb9467b5SJed Brown /*@C 346673ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34675dbd56e3SPeter Brune 346820f4b53cSBarry Smith Logically Collective; No Fortran Support 34695dbd56e3SPeter Brune 34704165533cSJose E. Roman Input Parameters: 3471bb7acecfSBarry Smith + global - global `DM` 3472bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34735dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 347420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34755dbd56e3SPeter Brune 347620f4b53cSBarry Smith Calling sequence of `ddhook`: 3477bb7acecfSBarry Smith + global - global `DM` 347873ff1848SBarry Smith . block - subdomain `DM` 3479ec4806b8SPeter Brune - ctx - optional user-defined function context 3480ec4806b8SPeter Brune 348120f4b53cSBarry Smith Calling sequence of `restricthook`: 3482bb7acecfSBarry Smith + global - global `DM` 348373ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 348473ff1848SBarry Smith . in - scatter to sub vector values only owned locally 348573ff1848SBarry Smith . block - subdomain `DM` 34865dbd56e3SPeter Brune - ctx - optional user-defined function context 34875dbd56e3SPeter Brune 34885dbd56e3SPeter Brune Level: advanced 34895dbd56e3SPeter Brune 34905dbd56e3SPeter Brune Notes: 349173ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34925dbd56e3SPeter Brune 34935dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34945dbd56e3SPeter Brune 34955dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3496bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34975dbd56e3SPeter Brune 349873ff1848SBarry Smith Developer Note: 349973ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 350073ff1848SBarry Smith 350173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35025dbd56e3SPeter Brune @*/ 3503a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3504d71ae5a4SJacob Faibussowitsch { 3505be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35065dbd56e3SPeter Brune 35075dbd56e3SPeter Brune PetscFunctionBegin; 35085dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3509b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35103ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3511b3a6b972SJed Brown } 35129566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35135dbd56e3SPeter Brune link->restricthook = restricthook; 3514be081cd6SPeter Brune link->ddhook = ddhook; 35155dbd56e3SPeter Brune link->ctx = ctx; 35160298fd71SBarry Smith link->next = NULL; 35175dbd56e3SPeter Brune *p = link; 35183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35195dbd56e3SPeter Brune } 35205dbd56e3SPeter Brune 3521b3a6b972SJed Brown /*@C 352273ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3523b3a6b972SJed Brown 352420f4b53cSBarry Smith Logically Collective; No Fortran Support 3525b3a6b972SJed Brown 35264165533cSJose E. Roman Input Parameters: 3527bb7acecfSBarry Smith + global - global `DM` 3528bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3529b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 353020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3531b3a6b972SJed Brown 3532b3a6b972SJed Brown Level: advanced 3533b3a6b972SJed Brown 353473ff1848SBarry Smith Note: 353573ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 353673ff1848SBarry Smith 353773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 353873ff1848SBarry Smith `DMCreateDomainDecomposition()` 3539b3a6b972SJed Brown @*/ 3540d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3541d71ae5a4SJacob Faibussowitsch { 3542b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3543b3a6b972SJed Brown 3544b3a6b972SJed Brown PetscFunctionBegin; 3545b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3546b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3547b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3548b3a6b972SJed Brown link = *p; 3549b3a6b972SJed Brown *p = link->next; 35509566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3551b3a6b972SJed Brown break; 3552b3a6b972SJed Brown } 3553b3a6b972SJed Brown } 35543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3555b3a6b972SJed Brown } 3556b3a6b972SJed Brown 35575dbd56e3SPeter Brune /*@ 355873ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35595dbd56e3SPeter Brune 35605dbd56e3SPeter Brune Collective if any hooks are 35615dbd56e3SPeter Brune 35624165533cSJose E. Roman Input Parameters: 3563a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3564a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3565a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3566a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35675dbd56e3SPeter Brune 35685dbd56e3SPeter Brune Level: developer 35695dbd56e3SPeter Brune 357073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35715dbd56e3SPeter Brune @*/ 3572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3573d71ae5a4SJacob Faibussowitsch { 3574be081cd6SPeter Brune DMSubDomainHookLink link; 35755dbd56e3SPeter Brune 35765dbd56e3SPeter Brune PetscFunctionBegin; 3577be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35781baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35795dbd56e3SPeter Brune } 35803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35815dbd56e3SPeter Brune } 35825dbd56e3SPeter Brune 35835fe1f584SPeter Brune /*@ 3584bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35855fe1f584SPeter Brune 35865fe1f584SPeter Brune Not Collective 35875fe1f584SPeter Brune 35885fe1f584SPeter Brune Input Parameter: 3589bb7acecfSBarry Smith . dm - the `DM` object 35905fe1f584SPeter Brune 35915fe1f584SPeter Brune Output Parameter: 35926a7d9d85SPeter Brune . level - number of coarsenings 35935fe1f584SPeter Brune 35945fe1f584SPeter Brune Level: developer 35955fe1f584SPeter Brune 35961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35975fe1f584SPeter Brune @*/ 3598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3599d71ae5a4SJacob Faibussowitsch { 36005fe1f584SPeter Brune PetscFunctionBegin; 36015fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36024f572ea9SToby Isaac PetscAssertPointer(level, 2); 36035fe1f584SPeter Brune *level = dm->leveldown; 36043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36055fe1f584SPeter Brune } 36065fe1f584SPeter Brune 36079a64c4a8SMatthew G. Knepley /*@ 3608bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36099a64c4a8SMatthew G. Knepley 361020f4b53cSBarry Smith Collective 36119a64c4a8SMatthew G. Knepley 36129a64c4a8SMatthew G. Knepley Input Parameters: 3613bb7acecfSBarry Smith + dm - the `DM` object 36149a64c4a8SMatthew G. Knepley - level - number of coarsenings 36159a64c4a8SMatthew G. Knepley 36169a64c4a8SMatthew G. Knepley Level: developer 36179a64c4a8SMatthew G. Knepley 3618bb7acecfSBarry Smith Note: 3619bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3620bb7acecfSBarry Smith 362142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36229a64c4a8SMatthew G. Knepley @*/ 3623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3624d71ae5a4SJacob Faibussowitsch { 36259a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36269a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36279a64c4a8SMatthew G. Knepley dm->leveldown = level; 36283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36299a64c4a8SMatthew G. Knepley } 36309a64c4a8SMatthew G. Knepley 3631cc4c1da9SBarry Smith /*@ 3632bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 363347c6ae99SBarry Smith 363420f4b53cSBarry Smith Collective 363547c6ae99SBarry Smith 3636d8d19677SJose E. Roman Input Parameters: 3637bb7acecfSBarry Smith + dm - the `DM` object 363847c6ae99SBarry Smith - nlevels - the number of levels of refinement 363947c6ae99SBarry Smith 364047c6ae99SBarry Smith Output Parameter: 3641bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 364247c6ae99SBarry Smith 364347c6ae99SBarry Smith Level: developer 364447c6ae99SBarry Smith 36451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364647c6ae99SBarry Smith @*/ 3647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3648d71ae5a4SJacob Faibussowitsch { 364947c6ae99SBarry Smith PetscFunctionBegin; 3650171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36517a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36523ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36534f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3654213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 365547c6ae99SBarry Smith PetscInt i; 365647c6ae99SBarry Smith 36579566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 365848a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3659213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 366147c6ae99SBarry Smith } 366247c6ae99SBarry Smith 3663cc4c1da9SBarry Smith /*@ 3664bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 366547c6ae99SBarry Smith 366620f4b53cSBarry Smith Collective 366747c6ae99SBarry Smith 3668d8d19677SJose E. Roman Input Parameters: 3669bb7acecfSBarry Smith + dm - the `DM` object 367047c6ae99SBarry Smith - nlevels - the number of levels of coarsening 367147c6ae99SBarry Smith 367247c6ae99SBarry Smith Output Parameter: 3673bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 367447c6ae99SBarry Smith 367547c6ae99SBarry Smith Level: developer 367647c6ae99SBarry Smith 36771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 367847c6ae99SBarry Smith @*/ 3679d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3680d71ae5a4SJacob Faibussowitsch { 368147c6ae99SBarry Smith PetscFunctionBegin; 3682171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36837a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36843ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36854f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3686213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 368747c6ae99SBarry Smith PetscInt i; 368847c6ae99SBarry Smith 36899566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 369048a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3691213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 369347c6ae99SBarry Smith } 369447c6ae99SBarry Smith 36951a266240SBarry Smith /*@C 3696bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36971a266240SBarry Smith 3698bb7acecfSBarry Smith Logically Collective if the function is collective 36991a266240SBarry Smith 37001a266240SBarry Smith Input Parameters: 3701bb7acecfSBarry Smith + dm - the `DM` object 370249abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37031a266240SBarry Smith 37041a266240SBarry Smith Level: intermediate 37051a266240SBarry Smith 370649abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 370749abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3708f07f9ceaSJed Brown @*/ 370949abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3710d71ae5a4SJacob Faibussowitsch { 37111a266240SBarry Smith PetscFunctionBegin; 3712171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37131a266240SBarry Smith dm->ctxdestroy = destroy; 37143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37151a266240SBarry Smith } 37161a266240SBarry Smith 3717b07ff414SBarry Smith /*@ 3718bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 371947c6ae99SBarry Smith 372047c6ae99SBarry Smith Not Collective 372147c6ae99SBarry Smith 372247c6ae99SBarry Smith Input Parameters: 3723bb7acecfSBarry Smith + dm - the `DM` object 372447c6ae99SBarry Smith - ctx - the user context 372547c6ae99SBarry Smith 372647c6ae99SBarry Smith Level: intermediate 372747c6ae99SBarry Smith 3728e33b3f0fSStefano Zampini Notes: 372935cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3730e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3731e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3732bb7acecfSBarry Smith 373360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 373447c6ae99SBarry Smith @*/ 3735d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3736d71ae5a4SJacob Faibussowitsch { 373747c6ae99SBarry Smith PetscFunctionBegin; 3738171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 373947c6ae99SBarry Smith dm->ctx = ctx; 37403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 374147c6ae99SBarry Smith } 374247c6ae99SBarry Smith 374347c6ae99SBarry Smith /*@ 3744bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 374547c6ae99SBarry Smith 374647c6ae99SBarry Smith Not Collective 374747c6ae99SBarry Smith 374847c6ae99SBarry Smith Input Parameter: 3749bb7acecfSBarry Smith . dm - the `DM` object 375047c6ae99SBarry Smith 375147c6ae99SBarry Smith Output Parameter: 375247c6ae99SBarry Smith . ctx - the user context 375347c6ae99SBarry Smith 375447c6ae99SBarry Smith Level: intermediate 375547c6ae99SBarry Smith 3756bb7acecfSBarry Smith Note: 375735cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3758bb7acecfSBarry Smith 375942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 376047c6ae99SBarry Smith @*/ 3761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3762d71ae5a4SJacob Faibussowitsch { 376347c6ae99SBarry Smith PetscFunctionBegin; 3764171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37651b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376747c6ae99SBarry Smith } 376847c6ae99SBarry Smith 376908da532bSDmitry Karpeev /*@C 3770bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 377108da532bSDmitry Karpeev 377220f4b53cSBarry Smith Logically Collective 377308da532bSDmitry Karpeev 3774d8d19677SJose E. Roman Input Parameters: 377508da532bSDmitry Karpeev + dm - the DM object 377620f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 377708da532bSDmitry Karpeev 377808da532bSDmitry Karpeev Level: intermediate 377908da532bSDmitry Karpeev 37801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3781db781477SPatrick Sanan `DMSetJacobian()` 378208da532bSDmitry Karpeev @*/ 3783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3784d71ae5a4SJacob Faibussowitsch { 378508da532bSDmitry Karpeev PetscFunctionBegin; 37865a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 378708da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 378908da532bSDmitry Karpeev } 379008da532bSDmitry Karpeev 379108da532bSDmitry Karpeev /*@ 3792bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 379308da532bSDmitry Karpeev 379408da532bSDmitry Karpeev Not Collective 379508da532bSDmitry Karpeev 379608da532bSDmitry Karpeev Input Parameter: 3797bb7acecfSBarry Smith . dm - the `DM` object to destroy 379808da532bSDmitry Karpeev 379908da532bSDmitry Karpeev Output Parameter: 3800bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 380108da532bSDmitry Karpeev 380208da532bSDmitry Karpeev Level: developer 380308da532bSDmitry Karpeev 38041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 380508da532bSDmitry Karpeev @*/ 3806d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3807d71ae5a4SJacob Faibussowitsch { 380808da532bSDmitry Karpeev PetscFunctionBegin; 38095a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38104f572ea9SToby Isaac PetscAssertPointer(flg, 2); 381108da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 381308da532bSDmitry Karpeev } 381408da532bSDmitry Karpeev 3815cc4c1da9SBarry Smith /*@ 3816bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 381708da532bSDmitry Karpeev 381820f4b53cSBarry Smith Logically Collective 381908da532bSDmitry Karpeev 3820f899ff85SJose E. Roman Input Parameter: 3821bb7acecfSBarry Smith . dm - the `DM` object 382208da532bSDmitry Karpeev 382360225df5SJacob Faibussowitsch Output Parameters: 382408da532bSDmitry Karpeev + xl - lower bound 382508da532bSDmitry Karpeev - xu - upper bound 382608da532bSDmitry Karpeev 3827907376e6SBarry Smith Level: advanced 3828907376e6SBarry Smith 382920f4b53cSBarry Smith Note: 383095452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 383108da532bSDmitry Karpeev 38321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 383308da532bSDmitry Karpeev @*/ 3834d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3835d71ae5a4SJacob Faibussowitsch { 383608da532bSDmitry Karpeev PetscFunctionBegin; 38375a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383808da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38395a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3840dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384208da532bSDmitry Karpeev } 384308da532bSDmitry Karpeev 3844b0ae01b7SPeter Brune /*@ 3845bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3846b0ae01b7SPeter Brune 3847b0ae01b7SPeter Brune Not Collective 3848b0ae01b7SPeter Brune 3849b0ae01b7SPeter Brune Input Parameter: 3850b0ae01b7SPeter Brune . dm - the DM object 3851b0ae01b7SPeter Brune 3852b0ae01b7SPeter Brune Output Parameter: 3853bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3854b0ae01b7SPeter Brune 3855b0ae01b7SPeter Brune Level: developer 3856b0ae01b7SPeter Brune 38571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3858b0ae01b7SPeter Brune @*/ 3859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3860d71ae5a4SJacob Faibussowitsch { 3861b0ae01b7SPeter Brune PetscFunctionBegin; 38625a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38634f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3864b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3866b0ae01b7SPeter Brune } 3867b0ae01b7SPeter Brune 38683ad4599aSBarry Smith /*@ 3869bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38703ad4599aSBarry Smith 38713ad4599aSBarry Smith Not Collective 38723ad4599aSBarry Smith 38733ad4599aSBarry Smith Input Parameter: 3874bb7acecfSBarry Smith . dm - the `DM` object 38753ad4599aSBarry Smith 38763ad4599aSBarry Smith Output Parameter: 3877bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38783ad4599aSBarry Smith 38793ad4599aSBarry Smith Level: developer 38803ad4599aSBarry Smith 38811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38823ad4599aSBarry Smith @*/ 3883d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3884d71ae5a4SJacob Faibussowitsch { 38853ad4599aSBarry Smith PetscFunctionBegin; 38865a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38874f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38883ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38903ad4599aSBarry Smith } 38913ad4599aSBarry Smith 3892a7058e45SLawrence Mitchell /*@ 3893bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3894a7058e45SLawrence Mitchell 3895a7058e45SLawrence Mitchell Not Collective 3896a7058e45SLawrence Mitchell 3897a7058e45SLawrence Mitchell Input Parameter: 3898bb7acecfSBarry Smith . dm - the `DM` object 3899a7058e45SLawrence Mitchell 3900a7058e45SLawrence Mitchell Output Parameter: 3901bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3902a7058e45SLawrence Mitchell 3903a7058e45SLawrence Mitchell Level: developer 3904a7058e45SLawrence Mitchell 39051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3906a7058e45SLawrence Mitchell @*/ 3907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3908d71ae5a4SJacob Faibussowitsch { 3909a7058e45SLawrence Mitchell PetscFunctionBegin; 39105a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39114f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3912dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3913ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3915a7058e45SLawrence Mitchell } 3916a7058e45SLawrence Mitchell 39170298fd71SBarry Smith PetscFunctionList DMList = NULL; 3918264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3919264ace61SBarry Smith 3920cc4c1da9SBarry Smith /*@ 3921bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3922264ace61SBarry Smith 392320f4b53cSBarry Smith Collective 3924264ace61SBarry Smith 3925264ace61SBarry Smith Input Parameters: 3926bb7acecfSBarry Smith + dm - The `DM` object 3927bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3928264ace61SBarry Smith 3929264ace61SBarry Smith Options Database Key: 3930bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3931264ace61SBarry Smith 3932264ace61SBarry Smith Level: intermediate 3933264ace61SBarry Smith 3934bb7acecfSBarry Smith Note: 39350462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3936bb7acecfSBarry Smith 39371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3938264ace61SBarry Smith @*/ 3939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3940d71ae5a4SJacob Faibussowitsch { 3941264ace61SBarry Smith PetscErrorCode (*r)(DM); 3942264ace61SBarry Smith PetscBool match; 3943264ace61SBarry Smith 3944264ace61SBarry Smith PetscFunctionBegin; 3945264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39469566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39473ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3948264ace61SBarry Smith 39499566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39509566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39517a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3952264ace61SBarry Smith 3953dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39549566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39559566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39569566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3958264ace61SBarry Smith } 3959264ace61SBarry Smith 3960cc4c1da9SBarry Smith /*@ 3961bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3962264ace61SBarry Smith 3963264ace61SBarry Smith Not Collective 3964264ace61SBarry Smith 3965264ace61SBarry Smith Input Parameter: 3966bb7acecfSBarry Smith . dm - The `DM` 3967264ace61SBarry Smith 3968264ace61SBarry Smith Output Parameter: 3969bb7acecfSBarry Smith . type - The `DMType` name 3970264ace61SBarry Smith 3971264ace61SBarry Smith Level: intermediate 3972264ace61SBarry Smith 39731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3974264ace61SBarry Smith @*/ 3975d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3976d71ae5a4SJacob Faibussowitsch { 3977264ace61SBarry Smith PetscFunctionBegin; 3978264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39794f572ea9SToby Isaac PetscAssertPointer(type, 2); 39809566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3981264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3983264ace61SBarry Smith } 3984264ace61SBarry Smith 39855d83a8b1SBarry Smith /*@ 3986bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 398767a56275SMatthew G Knepley 398820f4b53cSBarry Smith Collective 398967a56275SMatthew G Knepley 399067a56275SMatthew G Knepley Input Parameters: 3991bb7acecfSBarry Smith + dm - the `DM` 3992bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 399367a56275SMatthew G Knepley 399467a56275SMatthew G Knepley Output Parameter: 3995bb7acecfSBarry Smith . M - pointer to new `DM` 399667a56275SMatthew G Knepley 399720f4b53cSBarry Smith Level: intermediate 399820f4b53cSBarry Smith 399973ff1848SBarry Smith Note: 4000bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 4001bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4002bb7acecfSBarry Smith of the input `DM`. 400367a56275SMatthew G Knepley 40041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 400567a56275SMatthew G Knepley @*/ 4006d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4007d71ae5a4SJacob Faibussowitsch { 400867a56275SMatthew G Knepley DM B; 400967a56275SMatthew G Knepley char convname[256]; 4010c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 401167a56275SMatthew G Knepley 401267a56275SMatthew G Knepley PetscFunctionBegin; 401367a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 401467a56275SMatthew G Knepley PetscValidType(dm, 1); 40154f572ea9SToby Isaac PetscAssertPointer(M, 3); 40169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40179566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4018c067b6caSMatthew G. Knepley if (sametype) { 4019c067b6caSMatthew G. Knepley *M = dm; 40209566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4022c067b6caSMatthew G. Knepley } else { 40230298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 402467a56275SMatthew G Knepley 402567a56275SMatthew G Knepley /* 402667a56275SMatthew G Knepley Order of precedence: 402767a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 402867a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 402967a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 403067a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 403167a56275SMatthew G Knepley 5) Use a really basic converter. 403267a56275SMatthew G Knepley */ 403367a56275SMatthew G Knepley 403467a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40359566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40369566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40379566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40389566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40399566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40409566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 404167a56275SMatthew G Knepley if (conv) goto foundconv; 404267a56275SMatthew G Knepley 404367a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40449566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40459566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40469566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40479566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40489566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40499566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40509566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40519566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 405267a56275SMatthew G Knepley if (conv) { 40539566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 405467a56275SMatthew G Knepley goto foundconv; 405567a56275SMatthew G Knepley } 405667a56275SMatthew G Knepley 405767a56275SMatthew G Knepley #if 0 405867a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 405967a56275SMatthew G Knepley conv = B->ops->convertfrom; 40609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 406167a56275SMatthew G Knepley if (conv) goto foundconv; 406267a56275SMatthew G Knepley 406367a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 406467a56275SMatthew G Knepley if (dm->ops->convert) { 406567a56275SMatthew G Knepley conv = dm->ops->convert; 406667a56275SMatthew G Knepley } 406767a56275SMatthew G Knepley if (conv) goto foundconv; 406867a56275SMatthew G Knepley #endif 406967a56275SMatthew G Knepley 407067a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 407198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 407267a56275SMatthew G Knepley 407367a56275SMatthew G Knepley foundconv: 40749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40759566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 407612fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 407790b157c4SStefano Zampini { 40784fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40796858538eSMatthew G. Knepley 40804fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40814fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4082c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40839566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40849566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40859566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40869566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 408712fa691eSMatthew G. Knepley } 40889566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 408967a56275SMatthew G Knepley } 40909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 409267a56275SMatthew G Knepley } 4093264ace61SBarry Smith 4094264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4095264ace61SBarry Smith 4096264ace61SBarry Smith /*@C 4097bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40981c84c290SBarry Smith 4099cc4c1da9SBarry Smith Not Collective, No Fortran Support 41001c84c290SBarry Smith 41011c84c290SBarry Smith Input Parameters: 410220f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 410320f4b53cSBarry Smith - function - The creation routine itself 410420f4b53cSBarry Smith 410520f4b53cSBarry Smith Level: advanced 41061c84c290SBarry Smith 410773ff1848SBarry Smith Note: 410820f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41091c84c290SBarry Smith 411060225df5SJacob Faibussowitsch Example Usage: 41111c84c290SBarry Smith .vb 4112bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41131c84c290SBarry Smith .ve 41141c84c290SBarry Smith 411520f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41161c84c290SBarry Smith .vb 41171c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41181c84c290SBarry Smith DMSetType(DM,"my_da"); 41191c84c290SBarry Smith .ve 41201c84c290SBarry Smith or at runtime via the option 41211c84c290SBarry Smith .vb 41221c84c290SBarry Smith -da_type my_da 41231c84c290SBarry Smith .ve 4124264ace61SBarry Smith 41251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4126264ace61SBarry Smith @*/ 4127d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4128d71ae5a4SJacob Faibussowitsch { 4129264ace61SBarry Smith PetscFunctionBegin; 41309566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41319566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4133264ace61SBarry Smith } 4134264ace61SBarry Smith 4135ffeef943SBarry Smith /*@ 4136bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4137b859378eSBarry Smith 413820f4b53cSBarry Smith Collective 4139b859378eSBarry Smith 4140b859378eSBarry Smith Input Parameters: 4141bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4142bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4143bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4144bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4145b859378eSBarry Smith 4146b859378eSBarry Smith Level: intermediate 4147b859378eSBarry Smith 4148b859378eSBarry Smith Notes: 414955849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4150b859378eSBarry Smith 4151bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4152bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4153bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4154cd7e8a5eSksagiyam 41551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4156b859378eSBarry Smith @*/ 4157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4158d71ae5a4SJacob Faibussowitsch { 41599331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4160b859378eSBarry Smith 4161b859378eSBarry Smith PetscFunctionBegin; 4162b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4163b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41649566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41689331c7a4SMatthew G. Knepley if (isbinary) { 41699331c7a4SMatthew G. Knepley PetscInt classid; 41709331c7a4SMatthew G. Knepley char type[256]; 4171b859378eSBarry Smith 41729566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4173835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 41749566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41759566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4176dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41779331c7a4SMatthew G. Knepley } else if (ishdf5) { 4178dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41799331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4182b859378eSBarry Smith } 4183b859378eSBarry Smith 41844ee01570SBarry Smith /* FEM Support */ 41857da65231SMatthew G Knepley 41862ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41872ecf6ec3SMatthew G. Knepley { 41882ecf6ec3SMatthew G. Knepley PetscInt f; 41892ecf6ec3SMatthew G. Knepley 41902ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41912ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41922ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41932ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41942ecf6ec3SMatthew G. Knepley } 41952ecf6ec3SMatthew G. Knepley 4196d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4197d71ae5a4SJacob Faibussowitsch { 41981d47ebbbSSatish Balay PetscInt f; 41991b30c384SMatthew G Knepley 42007da65231SMatthew G Knepley PetscFunctionBegin; 420163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 420248a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42047da65231SMatthew G Knepley } 42057da65231SMatthew G Knepley 42065962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42075962854dSMatthew G. Knepley { 42085962854dSMatthew G. Knepley PetscInt f; 42095962854dSMatthew G. Knepley 42105962854dSMatthew G. Knepley PetscFunctionBegin; 42115962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42125962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42135962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42145962854dSMatthew G. Knepley } 42155962854dSMatthew G. Knepley 4216d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4217d71ae5a4SJacob Faibussowitsch { 42181b30c384SMatthew G Knepley PetscInt f, g; 42197da65231SMatthew G Knepley 42207da65231SMatthew G Knepley PetscFunctionBegin; 422163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42221d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42239566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 422448a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42259566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42267da65231SMatthew G Knepley } 42273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42287da65231SMatthew G Knepley } 4229e7c4fc90SDmitry Karpeev 4230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4231d71ae5a4SJacob Faibussowitsch { 42320c5b8624SToby Isaac PetscInt localSize, bs; 42330c5b8624SToby Isaac PetscMPIInt size; 42340c5b8624SToby Isaac Vec x, xglob; 42350c5b8624SToby Isaac const PetscScalar *xarray; 4236e759306cSMatthew G. Knepley 4237e759306cSMatthew G. Knepley PetscFunctionBegin; 42389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42399566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42409566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 424193ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42429566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42430c5b8624SToby Isaac if (size > 1) { 42449566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42459566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42469566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42479566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42480c5b8624SToby Isaac } else { 42490c5b8624SToby Isaac xglob = x; 42500c5b8624SToby Isaac } 42519566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42520c5b8624SToby Isaac if (size > 1) { 42539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42550c5b8624SToby Isaac } 42569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4258e759306cSMatthew G. Knepley } 4259e759306cSMatthew G. Knepley 426088ed4aceSMatthew G Knepley /*@ 4261bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4262061576a5SJed Brown 4263061576a5SJed Brown Input Parameter: 4264bb7acecfSBarry Smith . dm - The `DM` 4265061576a5SJed Brown 4266061576a5SJed Brown Output Parameter: 4267bb7acecfSBarry Smith . section - The `PetscSection` 4268061576a5SJed Brown 426920f4b53cSBarry Smith Options Database Key: 4270bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4271061576a5SJed Brown 4272061576a5SJed Brown Level: advanced 4273061576a5SJed Brown 4274061576a5SJed Brown Notes: 4275bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4276061576a5SJed Brown 4277bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4278061576a5SJed Brown 42791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4280061576a5SJed Brown @*/ 4281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4282d71ae5a4SJacob Faibussowitsch { 4283061576a5SJed Brown PetscFunctionBegin; 42849566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4286061576a5SJed Brown } 4287061576a5SJed Brown 4288061576a5SJed Brown /*@ 4289bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 429088ed4aceSMatthew G Knepley 429188ed4aceSMatthew G Knepley Input Parameter: 4292bb7acecfSBarry Smith . dm - The `DM` 429388ed4aceSMatthew G Knepley 429488ed4aceSMatthew G Knepley Output Parameter: 4295bb7acecfSBarry Smith . section - The `PetscSection` 429688ed4aceSMatthew G Knepley 429720f4b53cSBarry Smith Options Database Key: 4298bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4299e5893cccSMatthew G. Knepley 430088ed4aceSMatthew G Knepley Level: intermediate 430188ed4aceSMatthew G Knepley 4302bb7acecfSBarry Smith Note: 4303bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 430488ed4aceSMatthew G Knepley 43051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 430688ed4aceSMatthew G Knepley @*/ 4307d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4308d71ae5a4SJacob Faibussowitsch { 430988ed4aceSMatthew G Knepley PetscFunctionBegin; 431088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43114f572ea9SToby Isaac PetscAssertPointer(section, 2); 43121bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4313e5e52638SMatthew G. Knepley PetscInt d; 4314e5e52638SMatthew G. Knepley 431545480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 431645480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 431745480ffeSMatthew G. Knepley PetscViewer viewer; 431845480ffeSMatthew G. Knepley PetscViewerFormat format; 431945480ffeSMatthew G. Knepley PetscBool flg; 432045480ffeSMatthew G. Knepley 4321648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43229566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 432345480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43249566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43259566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 432645480ffeSMatthew G. Knepley } 432745480ffeSMatthew G. Knepley if (flg) { 43289566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43299566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4330648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 433145480ffeSMatthew G. Knepley } 433245480ffeSMatthew G. Knepley } 4333dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43349566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43352f0f8703SMatthew G. Knepley } 43361bb6d2a8SBarry Smith *section = dm->localSection; 43373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433888ed4aceSMatthew G Knepley } 433988ed4aceSMatthew G Knepley 434088ed4aceSMatthew G Knepley /*@ 4341bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4342061576a5SJed Brown 4343061576a5SJed Brown Input Parameters: 4344bb7acecfSBarry Smith + dm - The `DM` 4345bb7acecfSBarry Smith - section - The `PetscSection` 4346061576a5SJed Brown 4347061576a5SJed Brown Level: advanced 4348061576a5SJed Brown 4349061576a5SJed Brown Notes: 4350bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4351061576a5SJed Brown 4352bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4353061576a5SJed Brown 43541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4355061576a5SJed Brown @*/ 4356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4357d71ae5a4SJacob Faibussowitsch { 4358061576a5SJed Brown PetscFunctionBegin; 43599566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4361061576a5SJed Brown } 4362061576a5SJed Brown 4363061576a5SJed Brown /*@ 4364bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 436588ed4aceSMatthew G Knepley 436688ed4aceSMatthew G Knepley Input Parameters: 4367bb7acecfSBarry Smith + dm - The `DM` 4368bb7acecfSBarry Smith - section - The `PetscSection` 436988ed4aceSMatthew G Knepley 437088ed4aceSMatthew G Knepley Level: intermediate 437188ed4aceSMatthew G Knepley 4372bb7acecfSBarry Smith Note: 4373bb7acecfSBarry Smith Any existing Section will be destroyed 437488ed4aceSMatthew G Knepley 43751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 437688ed4aceSMatthew G Knepley @*/ 4377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4378d71ae5a4SJacob Faibussowitsch { 4379c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4380af122d2aSMatthew G Knepley PetscInt f; 438188ed4aceSMatthew G Knepley 438288ed4aceSMatthew G Knepley PetscFunctionBegin; 438388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4384b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43859566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43869566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43871bb6d2a8SBarry Smith dm->localSection = section; 43889566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4389af122d2aSMatthew G Knepley if (numFields) { 43909566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4391af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43920f21e855SMatthew G. Knepley PetscObject disc; 4393af122d2aSMatthew G Knepley const char *name; 4394af122d2aSMatthew G Knepley 43959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43969566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4398af122d2aSMatthew G Knepley } 4399af122d2aSMatthew G Knepley } 440050350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 440150350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 44029566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 440350350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 440452947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 440550350c8eSStefano Zampini 440650350c8eSStefano Zampini /* Clear scratch vectors */ 440750350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 440850350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 440950350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 441050350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 44113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441288ed4aceSMatthew G Knepley } 441388ed4aceSMatthew G Knepley 4414adc21957SMatthew G. Knepley /*@C 4415d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4416adc21957SMatthew G. Knepley 4417adc21957SMatthew G. Knepley Input Parameter: 4418adc21957SMatthew G. Knepley . dm - The `DM` 4419adc21957SMatthew G. Knepley 44209cde84edSJose E. Roman Output Parameters: 4421adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4422b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4423adc21957SMatthew G. Knepley 4424adc21957SMatthew G. Knepley Level: developer 4425adc21957SMatthew G. Knepley 4426adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4427adc21957SMatthew G. Knepley @*/ 4428adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4429adc21957SMatthew G. Knepley { 4430adc21957SMatthew G. Knepley PetscFunctionBegin; 4431adc21957SMatthew G. Knepley *perm = NULL; 4432adc21957SMatthew G. Knepley *blockStarts = NULL; 4433adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4434adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4435adc21957SMatthew G. Knepley } 4436adc21957SMatthew G. Knepley 44379435951eSToby Isaac /*@ 4438bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44399435951eSToby Isaac 444020f4b53cSBarry Smith not Collective 4441e228b242SToby Isaac 44429435951eSToby Isaac Input Parameter: 4443bb7acecfSBarry Smith . dm - The `DM` 44449435951eSToby Isaac 4445d8d19677SJose E. Roman Output Parameters: 444620f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 444720f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 444879769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44499435951eSToby Isaac 44509435951eSToby Isaac Level: advanced 44519435951eSToby Isaac 4452bb7acecfSBarry Smith Note: 4453bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44549435951eSToby Isaac 44551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44569435951eSToby Isaac @*/ 4457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4458d71ae5a4SJacob Faibussowitsch { 44599435951eSToby Isaac PetscFunctionBegin; 44609435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4461dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44623b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44633b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 446479769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44669435951eSToby Isaac } 44679435951eSToby Isaac 44689435951eSToby Isaac /*@ 4469bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44709435951eSToby Isaac 447120f4b53cSBarry Smith Collective 4472e228b242SToby Isaac 44739435951eSToby Isaac Input Parameters: 4474bb7acecfSBarry Smith + dm - The `DM` 4475bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447620f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 447720f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44789435951eSToby Isaac 44799435951eSToby Isaac Level: advanced 44809435951eSToby Isaac 448120f4b53cSBarry Smith Notes: 448220f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 448320f4b53cSBarry Smith 448420f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 448520f4b53cSBarry Smith 4486bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44879435951eSToby Isaac 44881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44899435951eSToby Isaac @*/ 4490d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4491d71ae5a4SJacob Faibussowitsch { 4492e228b242SToby Isaac PetscMPIInt result; 44939435951eSToby Isaac 44949435951eSToby Isaac PetscFunctionBegin; 44959435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4496e228b242SToby Isaac if (section) { 4497e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44997a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4500e228b242SToby Isaac } 4501e228b242SToby Isaac if (mat) { 4502e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 45039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 45047a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4505e228b242SToby Isaac } 450679769bd5SJed Brown if (bias) { 450779769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 45089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 450979769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 451079769bd5SJed Brown } 45119566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45129566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 45133b8ba7d1SJed Brown dm->defaultConstraint.section = section; 45149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45163b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45179566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 451979769bd5SJed Brown dm->defaultConstraint.bias = bias; 45203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45219435951eSToby Isaac } 45229435951eSToby Isaac 4523497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4524507e4973SMatthew G. Knepley /* 4525bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4526507e4973SMatthew G. Knepley 4527507e4973SMatthew G. Knepley Input Parameters: 4528bb7acecfSBarry Smith + dm - The `DM` 4529bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4530bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4531507e4973SMatthew G. Knepley 4532507e4973SMatthew G. Knepley Level: intermediate 4533507e4973SMatthew G. Knepley 45341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4535507e4973SMatthew G. Knepley */ 4536d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4537d71ae5a4SJacob Faibussowitsch { 4538507e4973SMatthew G. Knepley MPI_Comm comm; 4539507e4973SMatthew G. Knepley PetscLayout layout; 4540507e4973SMatthew G. Knepley const PetscInt *ranges; 4541507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4542507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4543507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4544507e4973SMatthew G. Knepley 4545507e4973SMatthew G. Knepley PetscFunctionBegin; 45469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4547507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45529566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45559566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45569566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4557507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4558f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4559507e4973SMatthew G. Knepley 45609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4566507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45679371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45689371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45699371c9d4SSatish Balay valid = PETSC_FALSE; 45709371c9d4SSatish Balay } 45719371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45729371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45739371c9d4SSatish Balay valid = PETSC_FALSE; 45749371c9d4SSatish Balay } 4575507e4973SMatthew G. Knepley if (gdof < 0) { 4576507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4577507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4578507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4579507e4973SMatthew G. Knepley 45809566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4581507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45829371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45839371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45849371c9d4SSatish Balay valid = PETSC_FALSE; 45859371c9d4SSatish Balay break; 45869371c9d4SSatish Balay } 4587507e4973SMatthew G. Knepley } 4588507e4973SMatthew G. Knepley } 4589507e4973SMatthew G. Knepley } 45909566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45919566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4592462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4593507e4973SMatthew G. Knepley if (!gvalid) { 45949566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4595507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4596507e4973SMatthew G. Knepley } 45973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4598507e4973SMatthew G. Knepley } 4599f741bcd2SMatthew G. Knepley #endif 4600507e4973SMatthew G. Knepley 460190df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 46026725e60dSJed Brown { 46036725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 46044d86920dSPierre Jolivet 46056725e60dSJed Brown PetscFunctionBegin; 46066725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46074f572ea9SToby Isaac PetscAssertPointer(sf, 2); 46085f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 46096725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 46106725e60dSJed Brown else *sf = dm->sf; 46113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46126725e60dSJed Brown } 46136725e60dSJed Brown 461488ed4aceSMatthew G Knepley /*@ 4615bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 461688ed4aceSMatthew G Knepley 461720f4b53cSBarry Smith Collective 46188b1ab98fSJed Brown 461988ed4aceSMatthew G Knepley Input Parameter: 4620bb7acecfSBarry Smith . dm - The `DM` 462188ed4aceSMatthew G Knepley 462288ed4aceSMatthew G Knepley Output Parameter: 4623bb7acecfSBarry Smith . section - The `PetscSection` 462488ed4aceSMatthew G Knepley 462588ed4aceSMatthew G Knepley Level: intermediate 462688ed4aceSMatthew G Knepley 4627bb7acecfSBarry Smith Note: 4628bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 462988ed4aceSMatthew G Knepley 46301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 463188ed4aceSMatthew G Knepley @*/ 4632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4633d71ae5a4SJacob Faibussowitsch { 463488ed4aceSMatthew G Knepley PetscFunctionBegin; 463588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46364f572ea9SToby Isaac PetscAssertPointer(section, 2); 46371bb6d2a8SBarry Smith if (!dm->globalSection) { 4638fd59a867SMatthew G. Knepley PetscSection s; 46396725e60dSJed Brown PetscSF sf; 4640fd59a867SMatthew G. Knepley 46419566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46427a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46437a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46445f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4645eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46469566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46489566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 464988ed4aceSMatthew G Knepley } 46501bb6d2a8SBarry Smith *section = dm->globalSection; 46513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 465288ed4aceSMatthew G Knepley } 465388ed4aceSMatthew G Knepley 4654b21d0597SMatthew G Knepley /*@ 4655bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4656b21d0597SMatthew G Knepley 4657b21d0597SMatthew G Knepley Input Parameters: 4658bb7acecfSBarry Smith + dm - The `DM` 46592fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4660b21d0597SMatthew G Knepley 4661b21d0597SMatthew G Knepley Level: intermediate 4662b21d0597SMatthew G Knepley 4663bb7acecfSBarry Smith Note: 4664bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4665b21d0597SMatthew G Knepley 46661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4667b21d0597SMatthew G Knepley @*/ 4668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4669d71ae5a4SJacob Faibussowitsch { 4670b21d0597SMatthew G Knepley PetscFunctionBegin; 4671b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46725080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46749566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46751bb6d2a8SBarry Smith dm->globalSection = section; 4676497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46779566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4678507e4973SMatthew G. Knepley #endif 467950350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 468050350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 468152947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 468250350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 468350350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4685b21d0597SMatthew G Knepley } 4686b21d0597SMatthew G Knepley 468788ed4aceSMatthew G Knepley /*@ 4688bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4689bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 469088ed4aceSMatthew G Knepley 469188ed4aceSMatthew G Knepley Input Parameter: 4692bb7acecfSBarry Smith . dm - The `DM` 469388ed4aceSMatthew G Knepley 469488ed4aceSMatthew G Knepley Output Parameter: 4695bb7acecfSBarry Smith . sf - The `PetscSF` 469688ed4aceSMatthew G Knepley 469788ed4aceSMatthew G Knepley Level: intermediate 469888ed4aceSMatthew G Knepley 4699bb7acecfSBarry Smith Note: 4700bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 470188ed4aceSMatthew G Knepley 47021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 470388ed4aceSMatthew G Knepley @*/ 4704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4705d71ae5a4SJacob Faibussowitsch { 470688ed4aceSMatthew G Knepley PetscInt nroots; 470788ed4aceSMatthew G Knepley 470888ed4aceSMatthew G Knepley PetscFunctionBegin; 470988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47104f572ea9SToby Isaac PetscAssertPointer(sf, 2); 471148a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 47129566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 471388ed4aceSMatthew G Knepley if (nroots < 0) { 471488ed4aceSMatthew G Knepley PetscSection section, gSection; 471588ed4aceSMatthew G Knepley 47169566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 471731ea6d37SMatthew G Knepley if (section) { 47189566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47199566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 472031ea6d37SMatthew G Knepley } else { 47210298fd71SBarry Smith *sf = NULL; 47223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472331ea6d37SMatthew G Knepley } 472488ed4aceSMatthew G Knepley } 47251bb6d2a8SBarry Smith *sf = dm->sectionSF; 47263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472788ed4aceSMatthew G Knepley } 472888ed4aceSMatthew G Knepley 472988ed4aceSMatthew G Knepley /*@ 4730bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 473188ed4aceSMatthew G Knepley 473288ed4aceSMatthew G Knepley Input Parameters: 4733bb7acecfSBarry Smith + dm - The `DM` 4734bb7acecfSBarry Smith - sf - The `PetscSF` 473588ed4aceSMatthew G Knepley 473688ed4aceSMatthew G Knepley Level: intermediate 473788ed4aceSMatthew G Knepley 4738bb7acecfSBarry Smith Note: 4739bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 474088ed4aceSMatthew G Knepley 47411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 474288ed4aceSMatthew G Knepley @*/ 4743d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4744d71ae5a4SJacob Faibussowitsch { 474588ed4aceSMatthew G Knepley PetscFunctionBegin; 474688ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4747b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47489566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47501bb6d2a8SBarry Smith dm->sectionSF = sf; 47513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 475288ed4aceSMatthew G Knepley } 475388ed4aceSMatthew G Knepley 4754cc4c1da9SBarry Smith /*@ 4755bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 475688ed4aceSMatthew G Knepley describing the data layout. 475788ed4aceSMatthew G Knepley 475888ed4aceSMatthew G Knepley Input Parameters: 4759bb7acecfSBarry Smith + dm - The `DM` 4760bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4761bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 476288ed4aceSMatthew G Knepley 47631bb6d2a8SBarry Smith Level: developer 47641bb6d2a8SBarry Smith 4765bb7acecfSBarry Smith Note: 4766bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4767bb7acecfSBarry Smith 476873ff1848SBarry Smith Developer Note: 4769bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4770bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4771b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4772b6971eaeSBarry Smith they create, this returns nothing 47731bb6d2a8SBarry Smith 47741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 477588ed4aceSMatthew G Knepley @*/ 4776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4777d71ae5a4SJacob Faibussowitsch { 477888ed4aceSMatthew G Knepley PetscFunctionBegin; 477988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47809566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478288ed4aceSMatthew G Knepley } 4783af122d2aSMatthew G Knepley 4784b21d0597SMatthew G Knepley /*@ 4785bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4786bb7acecfSBarry Smith 4787bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4788b21d0597SMatthew G Knepley 4789b21d0597SMatthew G Knepley Input Parameter: 4790bb7acecfSBarry Smith . dm - The `DM` 4791b21d0597SMatthew G Knepley 4792b21d0597SMatthew G Knepley Output Parameter: 4793bb7acecfSBarry Smith . sf - The `PetscSF` 4794b21d0597SMatthew G Knepley 4795b21d0597SMatthew G Knepley Level: intermediate 4796b21d0597SMatthew G Knepley 4797bb7acecfSBarry Smith Note: 4798bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4799b21d0597SMatthew G Knepley 48001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4801b21d0597SMatthew G Knepley @*/ 4802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4803d71ae5a4SJacob Faibussowitsch { 4804b21d0597SMatthew G Knepley PetscFunctionBegin; 4805b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48064f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4807b21d0597SMatthew G Knepley *sf = dm->sf; 48083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4809b21d0597SMatthew G Knepley } 4810b21d0597SMatthew G Knepley 4811057b4bcdSMatthew G Knepley /*@ 4812bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4813bb7acecfSBarry Smith 481420f4b53cSBarry Smith Collective 4815057b4bcdSMatthew G Knepley 4816057b4bcdSMatthew G Knepley Input Parameters: 4817bb7acecfSBarry Smith + dm - The `DM` 4818bb7acecfSBarry Smith - sf - The `PetscSF` 4819057b4bcdSMatthew G Knepley 4820057b4bcdSMatthew G Knepley Level: intermediate 4821057b4bcdSMatthew G Knepley 48221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4823057b4bcdSMatthew G Knepley @*/ 4824d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4825d71ae5a4SJacob Faibussowitsch { 4826057b4bcdSMatthew G Knepley PetscFunctionBegin; 4827057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4828b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48309566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4831057b4bcdSMatthew G Knepley dm->sf = sf; 48323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4833057b4bcdSMatthew G Knepley } 4834057b4bcdSMatthew G Knepley 48354f37162bSMatthew G. Knepley /*@ 4836bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48374f37162bSMatthew G. Knepley 48384f37162bSMatthew G. Knepley Input Parameter: 4839bb7acecfSBarry Smith . dm - The `DM` 48404f37162bSMatthew G. Knepley 48414f37162bSMatthew G. Knepley Output Parameter: 4842bb7acecfSBarry Smith . sf - The `PetscSF` 48434f37162bSMatthew G. Knepley 48444f37162bSMatthew G. Knepley Level: intermediate 48454f37162bSMatthew G. Knepley 4846bb7acecfSBarry Smith Note: 4847bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48484f37162bSMatthew G. Knepley 48491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48504f37162bSMatthew G. Knepley @*/ 4851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4852d71ae5a4SJacob Faibussowitsch { 48534f37162bSMatthew G. Knepley PetscFunctionBegin; 48544f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48554f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48564f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48584f37162bSMatthew G. Knepley } 48594f37162bSMatthew G. Knepley 48604f37162bSMatthew G. Knepley /*@ 48614f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48624f37162bSMatthew G. Knepley 48634f37162bSMatthew G. Knepley Input Parameters: 48644f37162bSMatthew G. Knepley + dm - The DM 48654f37162bSMatthew G. Knepley - sf - The PetscSF 48664f37162bSMatthew G. Knepley 48674f37162bSMatthew G. Knepley Level: intermediate 48684f37162bSMatthew G. Knepley 48691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48704f37162bSMatthew G. Knepley @*/ 4871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4872d71ae5a4SJacob Faibussowitsch { 48734f37162bSMatthew G. Knepley PetscFunctionBegin; 48744f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48754f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48779566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48784f37162bSMatthew G. Knepley dm->sfNatural = sf; 48793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48804f37162bSMatthew G. Knepley } 48814f37162bSMatthew G. Knepley 4882d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4883d71ae5a4SJacob Faibussowitsch { 488434aa8a36SMatthew G. Knepley PetscClassId id; 488534aa8a36SMatthew G. Knepley 488634aa8a36SMatthew G. Knepley PetscFunctionBegin; 48879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 488834aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48899566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 489034aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48919566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 489217c1d62eSMatthew G. Knepley } else { 48939566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 489434aa8a36SMatthew G. Knepley } 48953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489634aa8a36SMatthew G. Knepley } 489734aa8a36SMatthew G. Knepley 4898d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4899d71ae5a4SJacob Faibussowitsch { 490044a7f3ddSMatthew G. Knepley RegionField *tmpr; 490144a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 490244a7f3ddSMatthew G. Knepley 490344a7f3ddSMatthew G. Knepley PetscFunctionBegin; 49043ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 49059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 490644a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 49079371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 49089371c9d4SSatish Balay tmpr[f].disc = NULL; 49099371c9d4SSatish Balay tmpr[f].label = NULL; 49109371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 49119371c9d4SSatish Balay } 49129566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 491344a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 491444a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 491644a7f3ddSMatthew G. Knepley } 491744a7f3ddSMatthew G. Knepley 491844a7f3ddSMatthew G. Knepley /*@ 491920f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 492044a7f3ddSMatthew G. Knepley 492120f4b53cSBarry Smith Logically Collective 492244a7f3ddSMatthew G. Knepley 492344a7f3ddSMatthew G. Knepley Input Parameter: 492420f4b53cSBarry Smith . dm - The `DM` 492544a7f3ddSMatthew G. Knepley 492644a7f3ddSMatthew G. Knepley Level: intermediate 492744a7f3ddSMatthew G. Knepley 49281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 492944a7f3ddSMatthew G. Knepley @*/ 4930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4931d71ae5a4SJacob Faibussowitsch { 493244a7f3ddSMatthew G. Knepley PetscInt f; 493344a7f3ddSMatthew G. Knepley 493444a7f3ddSMatthew G. Knepley PetscFunctionBegin; 493544a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 493644a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49379566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49389566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 493944a7f3ddSMatthew G. Knepley } 49409566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 494144a7f3ddSMatthew G. Knepley dm->fields = NULL; 494244a7f3ddSMatthew G. Knepley dm->Nf = 0; 49433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 494444a7f3ddSMatthew G. Knepley } 494544a7f3ddSMatthew G. Knepley 4946689b5837SMatthew G. Knepley /*@ 494720f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4948689b5837SMatthew G. Knepley 494920f4b53cSBarry Smith Not Collective 4950689b5837SMatthew G. Knepley 4951689b5837SMatthew G. Knepley Input Parameter: 495220f4b53cSBarry Smith . dm - The `DM` 4953689b5837SMatthew G. Knepley 4954689b5837SMatthew G. Knepley Output Parameter: 495560225df5SJacob Faibussowitsch . numFields - The number of fields 4956689b5837SMatthew G. Knepley 4957689b5837SMatthew G. Knepley Level: intermediate 4958689b5837SMatthew G. Knepley 49591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4960689b5837SMatthew G. Knepley @*/ 4961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4962d71ae5a4SJacob Faibussowitsch { 49630f21e855SMatthew G. Knepley PetscFunctionBegin; 49640f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49654f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 496644a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4968af122d2aSMatthew G Knepley } 4969af122d2aSMatthew G Knepley 4970689b5837SMatthew G. Knepley /*@ 497120f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4972689b5837SMatthew G. Knepley 497320f4b53cSBarry Smith Logically Collective 4974689b5837SMatthew G. Knepley 4975689b5837SMatthew G. Knepley Input Parameters: 497620f4b53cSBarry Smith + dm - The `DM` 497760225df5SJacob Faibussowitsch - numFields - The number of fields 4978689b5837SMatthew G. Knepley 4979689b5837SMatthew G. Knepley Level: intermediate 4980689b5837SMatthew G. Knepley 49811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4982689b5837SMatthew G. Knepley @*/ 4983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4984d71ae5a4SJacob Faibussowitsch { 49850f21e855SMatthew G. Knepley PetscInt Nf, f; 4986af122d2aSMatthew G Knepley 4987af122d2aSMatthew G Knepley PetscFunctionBegin; 4988af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49899566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49900f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49910f21e855SMatthew G. Knepley PetscContainer obj; 49920f21e855SMatthew G. Knepley 49939566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49949566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49959566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4996af122d2aSMatthew G Knepley } 49973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4998af122d2aSMatthew G Knepley } 4999af122d2aSMatthew G Knepley 5000c1929be8SMatthew G. Knepley /*@ 5001bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 5002c1929be8SMatthew G. Knepley 500320f4b53cSBarry Smith Not Collective 5004c1929be8SMatthew G. Knepley 5005c1929be8SMatthew G. Knepley Input Parameters: 5006bb7acecfSBarry Smith + dm - The `DM` 5007c1929be8SMatthew G. Knepley - f - The field number 5008c1929be8SMatthew G. Knepley 500944a7f3ddSMatthew G. Knepley Output Parameters: 501020f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 501120f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 5012c1929be8SMatthew G. Knepley 501344a7f3ddSMatthew G. Knepley Level: intermediate 5014c1929be8SMatthew G. Knepley 50151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5016c1929be8SMatthew G. Knepley @*/ 5017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5018d71ae5a4SJacob Faibussowitsch { 5019af122d2aSMatthew G Knepley PetscFunctionBegin; 5020af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50214f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50227a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 502344a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5024bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5026decb47aaSMatthew G. Knepley } 5027decb47aaSMatthew G. Knepley 5028083401c6SMatthew G. Knepley /* Does not clear the DS */ 5029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5030d71ae5a4SJacob Faibussowitsch { 5031083401c6SMatthew G. Knepley PetscFunctionBegin; 50329566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50339566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50349566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5035083401c6SMatthew G. Knepley dm->fields[f].label = label; 5036bb7acecfSBarry Smith dm->fields[f].disc = disc; 50379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5038835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 50393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5040083401c6SMatthew G. Knepley } 5041083401c6SMatthew G. Knepley 5042ffeef943SBarry Smith /*@ 5043bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5044bb7acecfSBarry Smith the field numbering. 5045c1929be8SMatthew G. Knepley 504620f4b53cSBarry Smith Logically Collective 5047c1929be8SMatthew G. Knepley 5048c1929be8SMatthew G. Knepley Input Parameters: 5049bb7acecfSBarry Smith + dm - The `DM` 5050c1929be8SMatthew G. Knepley . f - The field number 505120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5052bb7acecfSBarry Smith - disc - The discretization object 5053c1929be8SMatthew G. Knepley 505444a7f3ddSMatthew G. Knepley Level: intermediate 5055c1929be8SMatthew G. Knepley 50561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5057c1929be8SMatthew G. Knepley @*/ 5058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5059d71ae5a4SJacob Faibussowitsch { 5060decb47aaSMatthew G. Knepley PetscFunctionBegin; 5061decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5062e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5063bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50647a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5065bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5066bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50679566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506944a7f3ddSMatthew G. Knepley } 507044a7f3ddSMatthew G. Knepley 5071ffeef943SBarry Smith /*@ 5072bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5073bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 507444a7f3ddSMatthew G. Knepley 507520f4b53cSBarry Smith Logically Collective 507644a7f3ddSMatthew G. Knepley 507744a7f3ddSMatthew G. Knepley Input Parameters: 5078bb7acecfSBarry Smith + dm - The `DM` 507920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5080bb7acecfSBarry Smith - disc - The discretization object 508144a7f3ddSMatthew G. Knepley 508244a7f3ddSMatthew G. Knepley Level: intermediate 508344a7f3ddSMatthew G. Knepley 5084bb7acecfSBarry Smith Notes: 5085bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5086bb7acecfSBarry Smith 5087da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5088bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5089bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5090bb7acecfSBarry Smith 50911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 509244a7f3ddSMatthew G. Knepley @*/ 5093d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5094d71ae5a4SJacob Faibussowitsch { 509544a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 509644a7f3ddSMatthew G. Knepley 509744a7f3ddSMatthew G. Knepley PetscFunctionBegin; 509844a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5099064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5100bb7acecfSBarry Smith PetscValidHeader(disc, 3); 51019566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 510244a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5103bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 51049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5105835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5106bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 51079566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 51083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5109af122d2aSMatthew G Knepley } 51106636e97aSMatthew G Knepley 5111e5e52638SMatthew G. Knepley /*@ 5112e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5113e0b68406SMatthew Knepley 511420f4b53cSBarry Smith Logically Collective 5115e0b68406SMatthew Knepley 5116e0b68406SMatthew Knepley Input Parameters: 5117bb7acecfSBarry Smith + dm - The `DM` 5118e0b68406SMatthew Knepley . f - The field index 5119bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5120e0b68406SMatthew Knepley 5121e0b68406SMatthew Knepley Level: intermediate 5122e0b68406SMatthew Knepley 51231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5124e0b68406SMatthew Knepley @*/ 5125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5126d71ae5a4SJacob Faibussowitsch { 5127e0b68406SMatthew Knepley PetscFunctionBegin; 512863a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5129e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5131e0b68406SMatthew Knepley } 5132e0b68406SMatthew Knepley 5133e0b68406SMatthew Knepley /*@ 5134e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5135e0b68406SMatthew Knepley 513620f4b53cSBarry Smith Not Collective 5137e0b68406SMatthew Knepley 5138e0b68406SMatthew Knepley Input Parameters: 5139bb7acecfSBarry Smith + dm - The `DM` 5140e0b68406SMatthew Knepley - f - The field index 5141e0b68406SMatthew Knepley 5142e0b68406SMatthew Knepley Output Parameter: 5143e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5144e0b68406SMatthew Knepley 5145e0b68406SMatthew Knepley Level: intermediate 5146e0b68406SMatthew Knepley 514760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5148e0b68406SMatthew Knepley @*/ 5149d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5150d71ae5a4SJacob Faibussowitsch { 5151e0b68406SMatthew Knepley PetscFunctionBegin; 515263a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5153e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5155e0b68406SMatthew Knepley } 5156e0b68406SMatthew Knepley 5157e0b68406SMatthew Knepley /*@ 5158bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5159e5e52638SMatthew G. Knepley 516020f4b53cSBarry Smith Collective 5161e5e52638SMatthew G. Knepley 5162bb4b53efSMatthew G. Knepley Input Parameters: 5163bb4b53efSMatthew G. Knepley + dm - The `DM` 5164bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5165bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5166e5e52638SMatthew G. Knepley 5167e5e52638SMatthew G. Knepley Output Parameter: 5168bb7acecfSBarry Smith . newdm - The `DM` 5169e5e52638SMatthew G. Knepley 5170e5e52638SMatthew G. Knepley Level: advanced 5171e5e52638SMatthew G. Knepley 51721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5173e5e52638SMatthew G. Knepley @*/ 5174bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5175d71ae5a4SJacob Faibussowitsch { 5176e5e52638SMatthew G. Knepley PetscInt Nf, f; 5177e5e52638SMatthew G. Knepley 5178e5e52638SMatthew G. Knepley PetscFunctionBegin; 51793ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51809566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51819566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5182e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5183e5e52638SMatthew G. Knepley DMLabel label; 5184e5e52638SMatthew G. Knepley PetscObject field; 5185bb4b53efSMatthew G. Knepley PetscClassId id; 518634aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5187e5e52638SMatthew G. Knepley 51889566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5189bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5190bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5191bb4b53efSMatthew G. Knepley PetscFE newfe; 5192bb4b53efSMatthew G. Knepley 5193bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5194bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5195bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5196bb4b53efSMatthew G. Knepley } else { 51979566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5198bb4b53efSMatthew G. Knepley } 51999566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 52009566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 520134aa8a36SMatthew G. Knepley } 52023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520334aa8a36SMatthew G. Knepley } 520434aa8a36SMatthew G. Knepley 520534aa8a36SMatthew G. Knepley /*@ 520634aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 520734aa8a36SMatthew G. Knepley 520820f4b53cSBarry Smith Not Collective 520934aa8a36SMatthew G. Knepley 521034aa8a36SMatthew G. Knepley Input Parameters: 521120f4b53cSBarry Smith + dm - The `DM` object 521220f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 521334aa8a36SMatthew G. Knepley 5214d8d19677SJose E. Roman Output Parameters: 521534aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 521634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 521734aa8a36SMatthew G. Knepley 521834aa8a36SMatthew G. Knepley Level: developer 521934aa8a36SMatthew G. Knepley 522020f4b53cSBarry Smith Notes: 522120f4b53cSBarry Smith .vb 522220f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 522320f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 522420f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 522520f4b53cSBarry Smith .ve 522620f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 522720f4b53cSBarry Smith 52281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 522934aa8a36SMatthew G. Knepley @*/ 5230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5231d71ae5a4SJacob Faibussowitsch { 523234aa8a36SMatthew G. Knepley PetscFunctionBegin; 523334aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52344f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52354f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 523634aa8a36SMatthew G. Knepley if (f < 0) { 523734aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 523834aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 523934aa8a36SMatthew G. Knepley } else { 524034aa8a36SMatthew G. Knepley PetscInt Nf; 524134aa8a36SMatthew G. Knepley 52429566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52437a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 524434aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 524534aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 524634aa8a36SMatthew G. Knepley } 52473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 524834aa8a36SMatthew G. Knepley } 524934aa8a36SMatthew G. Knepley 525034aa8a36SMatthew G. Knepley /*@ 525134aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 525234aa8a36SMatthew G. Knepley 525320f4b53cSBarry Smith Not Collective 525434aa8a36SMatthew G. Knepley 525534aa8a36SMatthew G. Knepley Input Parameters: 525620f4b53cSBarry Smith + dm - The `DM` object 525734aa8a36SMatthew G. Knepley . f - The field number 525834aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 525934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 526034aa8a36SMatthew G. Knepley 526134aa8a36SMatthew G. Knepley Level: developer 526234aa8a36SMatthew G. Knepley 526320f4b53cSBarry Smith Notes: 526420f4b53cSBarry Smith .vb 526520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 526620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 526720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 526820f4b53cSBarry Smith .ve 526920f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 527020f4b53cSBarry Smith 52711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 527234aa8a36SMatthew G. Knepley @*/ 5273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5274d71ae5a4SJacob Faibussowitsch { 527534aa8a36SMatthew G. Knepley PetscFunctionBegin; 527634aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 527734aa8a36SMatthew G. Knepley if (f < 0) { 527834aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 527934aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 528034aa8a36SMatthew G. Knepley } else { 528134aa8a36SMatthew G. Knepley PetscInt Nf; 528234aa8a36SMatthew G. Knepley 52839566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52847a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 528534aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 528634aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5287e5e52638SMatthew G. Knepley } 52883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5289e5e52638SMatthew G. Knepley } 5290e5e52638SMatthew G. Knepley 5291b0441da4SMatthew G. Knepley /*@ 5292b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5293b0441da4SMatthew G. Knepley 5294b0441da4SMatthew G. Knepley Not collective 5295b0441da4SMatthew G. Knepley 5296f899ff85SJose E. Roman Input Parameter: 529720f4b53cSBarry Smith . dm - The `DM` object 5298b0441da4SMatthew G. Knepley 5299d8d19677SJose E. Roman Output Parameters: 5300b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5301b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5302b0441da4SMatthew G. Knepley 5303b0441da4SMatthew G. Knepley Level: developer 5304b0441da4SMatthew G. Knepley 530520f4b53cSBarry Smith Notes: 530620f4b53cSBarry Smith .vb 530720f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 530820f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 530920f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 531020f4b53cSBarry Smith .ve 531120f4b53cSBarry Smith 53121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5313b0441da4SMatthew G. Knepley @*/ 5314d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5315d71ae5a4SJacob Faibussowitsch { 5316b0441da4SMatthew G. Knepley PetscInt Nf; 5317b0441da4SMatthew G. Knepley 5318b0441da4SMatthew G. Knepley PetscFunctionBegin; 5319b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53204f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 53214f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 53229566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5323b0441da4SMatthew G. Knepley if (!Nf) { 53249566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5325b0441da4SMatthew G. Knepley } else { 53269566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5327b0441da4SMatthew G. Knepley } 53283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5329b0441da4SMatthew G. Knepley } 5330b0441da4SMatthew G. Knepley 5331b0441da4SMatthew G. Knepley /*@ 5332b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5333b0441da4SMatthew G. Knepley 533420f4b53cSBarry Smith Not Collective 5335b0441da4SMatthew G. Knepley 5336b0441da4SMatthew G. Knepley Input Parameters: 533720f4b53cSBarry Smith + dm - The `DM` object 5338b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5339b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5340b0441da4SMatthew G. Knepley 5341b0441da4SMatthew G. Knepley Level: developer 5342b0441da4SMatthew G. Knepley 534320f4b53cSBarry Smith Notes: 534420f4b53cSBarry Smith .vb 534520f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 534620f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 534720f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 534820f4b53cSBarry Smith .ve 534920f4b53cSBarry Smith 53501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5351b0441da4SMatthew G. Knepley @*/ 5352d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5353d71ae5a4SJacob Faibussowitsch { 5354b0441da4SMatthew G. Knepley PetscInt Nf; 5355b0441da4SMatthew G. Knepley 5356b0441da4SMatthew G. Knepley PetscFunctionBegin; 5357b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53589566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5359b0441da4SMatthew G. Knepley if (!Nf) { 53609566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5361b0441da4SMatthew G. Knepley } else { 53629566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5363e5e52638SMatthew G. Knepley } 53643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5365e5e52638SMatthew G. Knepley } 5366e5e52638SMatthew G. Knepley 5367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5368d71ae5a4SJacob Faibussowitsch { 5369799db056SMatthew G. Knepley DM plex; 5370799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5371799db056SMatthew G. Knepley const char **names; 5372799db056SMatthew G. Knepley char *sendNames, *recvNames; 5373799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5374799db056SMatthew G. Knepley size_t len; 5375799db056SMatthew G. Knepley MPI_Comm comm; 5376799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5377783e2ec8SMatthew G. Knepley 5378783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5379799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5380799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5381799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5382799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5383799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5384799db056SMatthew G. Knepley PetscDS dsBC; 5385799db056SMatthew G. Knepley PetscInt numBd; 5386799db056SMatthew G. Knepley 538707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5388799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5389799db056SMatthew G. Knepley maxLabels += numBd; 5390799db056SMatthew G. Knepley } 5391799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5392799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5393799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5394799db056SMatthew G. Knepley PetscDS dsBC; 5395799db056SMatthew G. Knepley PetscInt numBd, bd; 5396799db056SMatthew G. Knepley 539707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5398799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5399799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5400799db056SMatthew G. Knepley DMLabel label; 5401799db056SMatthew G. Knepley PetscInt field; 5402799db056SMatthew G. Knepley PetscObject obj; 5403799db056SMatthew G. Knepley PetscClassId id; 5404799db056SMatthew G. Knepley 5405799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 54069566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 54079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5408799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 54099371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 54109371c9d4SSatish Balay if (labels[l] == label) break; 5411799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5412783e2ec8SMatthew G. Knepley } 5413799db056SMatthew G. Knepley } 5414799db056SMatthew G. Knepley /* Get label names */ 5415799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5416799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 54179371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 54189371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 54199371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 54209371c9d4SSatish Balay } 5421799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5422462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5423799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5424c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5425799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5426799db056SMatthew G. Knepley /* Put all names on all processes */ 5427799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5428799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5429799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5430799db056SMatthew G. Knepley gNl = displs[size]; 54319371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54329371c9d4SSatish Balay counts[p] *= gmaxLen; 54339371c9d4SSatish Balay displs[p] *= gmaxLen; 54349371c9d4SSatish Balay } 5435799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5436799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5437799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5438799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5439799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5440799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5441799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54429371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54435d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 54449566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5445799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54469566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5447799db056SMatthew G. Knepley ++gl; 54485d6b2bfcSJames Wright next_label: 54495d6b2bfcSJames Wright continue; 5450783e2ec8SMatthew G. Knepley } 5451799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5453783e2ec8SMatthew G. Knepley } 5454783e2ec8SMatthew G. Knepley 5455d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5456d71ae5a4SJacob Faibussowitsch { 5457e5e52638SMatthew G. Knepley DMSpace *tmpd; 5458e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5459e5e52638SMatthew G. Knepley 5460e5e52638SMatthew G. Knepley PetscFunctionBegin; 54613ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5463e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54649371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54659371c9d4SSatish Balay tmpd[s].ds = NULL; 54669371c9d4SSatish Balay tmpd[s].label = NULL; 54679371c9d4SSatish Balay tmpd[s].fields = NULL; 54689371c9d4SSatish Balay } 54699566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5470e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5471e5e52638SMatthew G. Knepley dm->probs = tmpd; 54723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5473e5e52638SMatthew G. Knepley } 5474e5e52638SMatthew G. Knepley 5475e5e52638SMatthew G. Knepley /*@ 547620f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5477e5e52638SMatthew G. Knepley 547820f4b53cSBarry Smith Not Collective 5479e5e52638SMatthew G. Knepley 5480e5e52638SMatthew G. Knepley Input Parameter: 548120f4b53cSBarry Smith . dm - The `DM` 5482e5e52638SMatthew G. Knepley 5483e5e52638SMatthew G. Knepley Output Parameter: 548420f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5485e5e52638SMatthew G. Knepley 5486e5e52638SMatthew G. Knepley Level: intermediate 5487e5e52638SMatthew G. Knepley 54881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5489e5e52638SMatthew G. Knepley @*/ 5490d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5491d71ae5a4SJacob Faibussowitsch { 5492e5e52638SMatthew G. Knepley PetscFunctionBegin; 5493e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54944f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5495e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5497e5e52638SMatthew G. Knepley } 5498e5e52638SMatthew G. Knepley 5499e5e52638SMatthew G. Knepley /*@ 550020f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5501e5e52638SMatthew G. Knepley 550220f4b53cSBarry Smith Logically Collective 5503e5e52638SMatthew G. Knepley 5504e5e52638SMatthew G. Knepley Input Parameter: 550520f4b53cSBarry Smith . dm - The `DM` 5506e5e52638SMatthew G. Knepley 5507e5e52638SMatthew G. Knepley Level: intermediate 5508e5e52638SMatthew G. Knepley 55091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5510e5e52638SMatthew G. Knepley @*/ 5511d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5512d71ae5a4SJacob Faibussowitsch { 5513e5e52638SMatthew G. Knepley PetscInt s; 5514e5e52638SMatthew G. Knepley 5515e5e52638SMatthew G. Knepley PetscFunctionBegin; 5516e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5517e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 55189566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 551907218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 55209566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 55219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5522e5e52638SMatthew G. Knepley } 55239566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5524e5e52638SMatthew G. Knepley dm->probs = NULL; 5525e5e52638SMatthew G. Knepley dm->Nds = 0; 55263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5527e5e52638SMatthew G. Knepley } 5528e5e52638SMatthew G. Knepley 5529e5e52638SMatthew G. Knepley /*@ 553020f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5531e5e52638SMatthew G. Knepley 553220f4b53cSBarry Smith Not Collective 5533e5e52638SMatthew G. Knepley 5534e5e52638SMatthew G. Knepley Input Parameter: 553520f4b53cSBarry Smith . dm - The `DM` 5536e5e52638SMatthew G. Knepley 5537e5e52638SMatthew G. Knepley Output Parameter: 553807218a29SMatthew G. Knepley . ds - The default `PetscDS` 5539e5e52638SMatthew G. Knepley 5540e5e52638SMatthew G. Knepley Level: intermediate 5541e5e52638SMatthew G. Knepley 55421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5543e5e52638SMatthew G. Knepley @*/ 554407218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5545d71ae5a4SJacob Faibussowitsch { 5546e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5547e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55484f572ea9SToby Isaac PetscAssertPointer(ds, 2); 554907218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 555007218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5552e5e52638SMatthew G. Knepley } 5553e5e52638SMatthew G. Knepley 5554e5e52638SMatthew G. Knepley /*@ 555520f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5556e5e52638SMatthew G. Knepley 555720f4b53cSBarry Smith Not Collective 5558e5e52638SMatthew G. Knepley 5559e5e52638SMatthew G. Knepley Input Parameters: 556020f4b53cSBarry Smith + dm - The `DM` 556120f4b53cSBarry Smith - point - Cell for the `PetscDS` 5562e5e52638SMatthew G. Knepley 556307218a29SMatthew G. Knepley Output Parameters: 556407218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 556507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5566e5e52638SMatthew G. Knepley 5567e5e52638SMatthew G. Knepley Level: developer 5568e5e52638SMatthew G. Knepley 55691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5570e5e52638SMatthew G. Knepley @*/ 557107218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5572d71ae5a4SJacob Faibussowitsch { 557307218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5574e5e52638SMatthew G. Knepley PetscInt s; 5575e5e52638SMatthew G. Knepley 5576e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5577e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55784f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55794f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 558063a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 558107218a29SMatthew G. Knepley if (ds) *ds = NULL; 558207218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5583e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5584e5e52638SMatthew G. Knepley PetscInt val; 5585e5e52638SMatthew G. Knepley 55869371c9d4SSatish Balay if (!dm->probs[s].label) { 558707218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55889371c9d4SSatish Balay } else { 55899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55909371c9d4SSatish Balay if (val >= 0) { 559107218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559207218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55939371c9d4SSatish Balay break; 55949371c9d4SSatish Balay } 5595e5e52638SMatthew G. Knepley } 5596e5e52638SMatthew G. Knepley } 559707218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5599e5e52638SMatthew G. Knepley } 5600e5e52638SMatthew G. Knepley 5601e5e52638SMatthew G. Knepley /*@ 560220f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5603e5e52638SMatthew G. Knepley 560420f4b53cSBarry Smith Not Collective 5605e5e52638SMatthew G. Knepley 5606e5e52638SMatthew G. Knepley Input Parameters: 560720f4b53cSBarry Smith + dm - The `DM` 560820f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5609e5e52638SMatthew G. Knepley 5610b3cf3223SMatthew G. Knepley Output Parameters: 561120f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 561207218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 561307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5614e5e52638SMatthew G. Knepley 5615e5e52638SMatthew G. Knepley Level: advanced 5616e5e52638SMatthew G. Knepley 561720f4b53cSBarry Smith Note: 561820f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 561920f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 562007218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 562120f4b53cSBarry Smith 56221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5623e5e52638SMatthew G. Knepley @*/ 562407218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5625d71ae5a4SJacob Faibussowitsch { 5626e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5627e5e52638SMatthew G. Knepley 5628e5e52638SMatthew G. Knepley PetscFunctionBegin; 5629e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5630e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56319371c9d4SSatish Balay if (fields) { 56324f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56339371c9d4SSatish Balay *fields = NULL; 56349371c9d4SSatish Balay } 56359371c9d4SSatish Balay if (ds) { 56364f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56379371c9d4SSatish Balay *ds = NULL; 56389371c9d4SSatish Balay } 563907218a29SMatthew G. Knepley if (dsIn) { 56404f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 564107218a29SMatthew G. Knepley *dsIn = NULL; 564207218a29SMatthew G. Knepley } 5643e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5644154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5645b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5646b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 564707218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56483ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5649b3cf3223SMatthew G. Knepley } 5650e5e52638SMatthew G. Knepley } 56513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5652e5e52638SMatthew G. Knepley } 5653e5e52638SMatthew G. Knepley 5654e5e52638SMatthew G. Knepley /*@ 5655bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5656083401c6SMatthew G. Knepley 565720f4b53cSBarry Smith Collective 5658083401c6SMatthew G. Knepley 5659083401c6SMatthew G. Knepley Input Parameters: 5660bb7acecfSBarry Smith + dm - The `DM` 566120f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 566207218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 566307218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 566407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5665083401c6SMatthew G. Knepley 566620f4b53cSBarry Smith Level: advanced 566720f4b53cSBarry Smith 5668bb7acecfSBarry Smith Note: 5669bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5670083401c6SMatthew G. Knepley the fields argument is ignored. 5671083401c6SMatthew G. Knepley 56721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5673083401c6SMatthew G. Knepley @*/ 567407218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5675d71ae5a4SJacob Faibussowitsch { 5676083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5677083401c6SMatthew G. Knepley 5678083401c6SMatthew G. Knepley PetscFunctionBegin; 5679083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5680083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 568107218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5682064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 568307218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5684083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5685083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56869566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 568707218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5688083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 568907218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5691083401c6SMatthew G. Knepley } 5692083401c6SMatthew G. Knepley } 56939566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56949566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 569707218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5698083401c6SMatthew G. Knepley if (!label) { 5699083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5700083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5701083401c6SMatthew G. Knepley Nds = 0; 5702083401c6SMatthew G. Knepley } 5703083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5704083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5705083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 570607218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 57073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5708083401c6SMatthew G. Knepley } 5709083401c6SMatthew G. Knepley 5710083401c6SMatthew G. Knepley /*@ 571120f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5712e5e52638SMatthew G. Knepley 571320f4b53cSBarry Smith Not Collective 5714e5e52638SMatthew G. Knepley 5715e5e52638SMatthew G. Knepley Input Parameters: 571620f4b53cSBarry Smith + dm - The `DM` 5717e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5718e5e52638SMatthew G. Knepley 5719e5e52638SMatthew G. Knepley Output Parameters: 572020f4b53cSBarry Smith + label - The region label, or `NULL` 572120f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 572207218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 572307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5724e5e52638SMatthew G. Knepley 5725e5e52638SMatthew G. Knepley Level: advanced 5726e5e52638SMatthew G. Knepley 57271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5728e5e52638SMatthew G. Knepley @*/ 572907218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5730d71ae5a4SJacob Faibussowitsch { 5731e5e52638SMatthew G. Knepley PetscInt Nds; 5732e5e52638SMatthew G. Knepley 5733e5e52638SMatthew G. Knepley PetscFunctionBegin; 5734e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57359566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 573663a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5737e5e52638SMatthew G. Knepley if (label) { 57384f572ea9SToby Isaac PetscAssertPointer(label, 3); 5739e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5740e5e52638SMatthew G. Knepley } 5741b3cf3223SMatthew G. Knepley if (fields) { 57424f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5743b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5744b3cf3223SMatthew G. Knepley } 5745e5e52638SMatthew G. Knepley if (ds) { 57464f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5747e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5748e5e52638SMatthew G. Knepley } 574907218a29SMatthew G. Knepley if (dsIn) { 57504f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 575107218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 575207218a29SMatthew G. Knepley } 57533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5754e5e52638SMatthew G. Knepley } 5755e5e52638SMatthew G. Knepley 5756e5e52638SMatthew G. Knepley /*@ 575720f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5758e5e52638SMatthew G. Knepley 575920f4b53cSBarry Smith Not Collective 5760e5e52638SMatthew G. Knepley 5761e5e52638SMatthew G. Knepley Input Parameters: 576220f4b53cSBarry Smith + dm - The `DM` 5763083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 576420f4b53cSBarry Smith . label - The region label, or `NULL` 576507218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 576607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 576707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5768e5e52638SMatthew G. Knepley 5769e5e52638SMatthew G. Knepley Level: advanced 5770e5e52638SMatthew G. Knepley 57711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5772e5e52638SMatthew G. Knepley @*/ 577307218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5774d71ae5a4SJacob Faibussowitsch { 5775083401c6SMatthew G. Knepley PetscInt Nds; 5776e5e52638SMatthew G. Knepley 5777e5e52638SMatthew G. Knepley PetscFunctionBegin; 5778e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5779ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57809566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 578163a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57829566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57839566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5784083401c6SMatthew G. Knepley dm->probs[num].label = label; 5785083401c6SMatthew G. Knepley if (fields) { 5786083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5789083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5790e5e52638SMatthew G. Knepley } 5791083401c6SMatthew G. Knepley if (ds) { 5792083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57949566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5795083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5796083401c6SMatthew G. Knepley } 579707218a29SMatthew G. Knepley if (dsIn) { 579807218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 579907218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 580007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 580107218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 580207218a29SMatthew G. Knepley } 58033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5804e5e52638SMatthew G. Knepley } 5805e5e52638SMatthew G. Knepley 5806e5e52638SMatthew G. Knepley /*@ 580720f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 58081d3af9e0SMatthew G. Knepley 580920f4b53cSBarry Smith Not Collective 58101d3af9e0SMatthew G. Knepley 58111d3af9e0SMatthew G. Knepley Input Parameters: 581220f4b53cSBarry Smith + dm - The `DM` 581320f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 58141d3af9e0SMatthew G. Knepley 58151d3af9e0SMatthew G. Knepley Output Parameter: 58161d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 58171d3af9e0SMatthew G. Knepley 58181d3af9e0SMatthew G. Knepley Level: advanced 58191d3af9e0SMatthew G. Knepley 58201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 58211d3af9e0SMatthew G. Knepley @*/ 5822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5823d71ae5a4SJacob Faibussowitsch { 58241d3af9e0SMatthew G. Knepley PetscInt Nds, n; 58251d3af9e0SMatthew G. Knepley 58261d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58271d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58281d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58294f572ea9SToby Isaac PetscAssertPointer(num, 3); 58309566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58319371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58329371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58331d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58341d3af9e0SMatthew G. Knepley else *num = n; 58353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58361d3af9e0SMatthew G. Knepley } 58371d3af9e0SMatthew G. Knepley 5838cc4c1da9SBarry Smith /*@ 5839bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58402df84da0SMatthew G. Knepley 584120f4b53cSBarry Smith Not Collective 58422df84da0SMatthew G. Knepley 5843f1a722f8SMatthew G. Knepley Input Parameters: 5844bb7acecfSBarry Smith + dm - The `DM` 58452df84da0SMatthew G. Knepley . Nc - The number of components for the field 584620f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5847bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58482df84da0SMatthew G. Knepley 58492df84da0SMatthew G. Knepley Output Parameter: 5850bb7acecfSBarry Smith . fem - The `PetscFE` 58512df84da0SMatthew G. Knepley 585220f4b53cSBarry Smith Level: intermediate 585320f4b53cSBarry Smith 5854bb7acecfSBarry Smith Note: 5855bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58562df84da0SMatthew G. Knepley 58571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58582df84da0SMatthew G. Knepley @*/ 5859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5860d71ae5a4SJacob Faibussowitsch { 58612df84da0SMatthew G. Knepley DMPolytopeType ct; 58622df84da0SMatthew G. Knepley PetscInt dim, cStart; 58632df84da0SMatthew G. Knepley 58642df84da0SMatthew G. Knepley PetscFunctionBegin; 58652df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58662df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58674f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58682df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58694f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58709566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58719566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58729566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58739566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58752df84da0SMatthew G. Knepley } 58762df84da0SMatthew G. Knepley 58771d3af9e0SMatthew G. Knepley /*@ 5878bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5879e5e52638SMatthew G. Knepley 588020f4b53cSBarry Smith Collective 5881e5e52638SMatthew G. Knepley 5882e5e52638SMatthew G. Knepley Input Parameter: 5883bb7acecfSBarry Smith . dm - The `DM` 5884e5e52638SMatthew G. Knepley 588520f4b53cSBarry Smith Options Database Key: 5886bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 588745480ffeSMatthew G. Knepley 588820f4b53cSBarry Smith Level: intermediate 588920f4b53cSBarry Smith 58901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5891e5e52638SMatthew G. Knepley @*/ 5892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5893d71ae5a4SJacob Faibussowitsch { 5894e5e52638SMatthew G. Knepley MPI_Comm comm; 5895083401c6SMatthew G. Knepley PetscDS dsDef; 5896083401c6SMatthew G. Knepley DMLabel *labelSet; 5897f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5898f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5899e5e52638SMatthew G. Knepley 5900e5e52638SMatthew G. Knepley PetscFunctionBegin; 5901e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59023ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 59039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 59049566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5905083401c6SMatthew G. Knepley /* Determine how many regions we have */ 59069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5907083401c6SMatthew G. Knepley Nl = 0; 5908083401c6SMatthew G. Knepley Ndef = 0; 5909083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5910083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5911083401c6SMatthew G. Knepley PetscInt l; 5912083401c6SMatthew G. Knepley 5913f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5914f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5915f918ec44SMatthew G. Knepley { 5916f918ec44SMatthew G. Knepley PetscClassId id; 5917f918ec44SMatthew G. Knepley 59189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5919f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5920f918ec44SMatthew G. Knepley Ceed ceed; 5921f918ec44SMatthew G. Knepley 59229566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 59239566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5924f918ec44SMatthew G. Knepley } 5925f918ec44SMatthew G. Knepley } 5926f918ec44SMatthew G. Knepley #endif 59279371c9d4SSatish Balay if (!label) { 59289371c9d4SSatish Balay ++Ndef; 59299371c9d4SSatish Balay continue; 59309371c9d4SSatish Balay } 59319371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59329371c9d4SSatish Balay if (label == labelSet[l]) break; 5933083401c6SMatthew G. Knepley if (l < Nl) continue; 5934083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5935083401c6SMatthew G. Knepley } 5936083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 593707218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5938083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5939b3cf3223SMatthew G. Knepley IS fields; 5940b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5941b3cf3223SMatthew G. Knepley 59429371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59439371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59447a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59469371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59479371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59489566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59499566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59509566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59519566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 595288f0c812SMatthew G. Knepley 59539566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 595407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59559566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59572df9ee95SMatthew G. Knepley } 595807218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59599566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5960083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5961083401c6SMatthew G. Knepley if (Ndef && Nl) { 59620122748bSMatthew G. Knepley DM plex; 5963083401c6SMatthew G. Knepley DMLabel cellLabel; 5964083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5965083401c6SMatthew G. Knepley PetscInt *fields; 5966083401c6SMatthew G. Knepley const PetscInt *cells; 5967083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59680122748bSMatthew G. Knepley 59699566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59709566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59719566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59729566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59735fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5974083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5975083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5976083401c6SMatthew G. Knepley IS pointIS; 5977083401c6SMatthew G. Knepley 59789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59799566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59809566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5982083401c6SMatthew G. Knepley } 59839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5984083401c6SMatthew G. Knepley 59859566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59879566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59889566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59899566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59919566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5992083401c6SMatthew G. Knepley 59939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59949371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59959371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59969566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59989566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59999566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 6000083401c6SMatthew G. Knepley 60019566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 600207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 60039566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 60049566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 60059566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 60069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 60079566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 6008083401c6SMatthew G. Knepley } 6009083401c6SMatthew G. Knepley /* Create label DSes 6010083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 6011083401c6SMatthew G. Knepley */ 6012083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 6013083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 6014083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 601507218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 6016083401c6SMatthew G. Knepley IS fields; 6017083401c6SMatthew G. Knepley PetscInt *fld, nf; 6018083401c6SMatthew G. Knepley 60199566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 60209371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60219371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 60229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 60239371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60249371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 60259566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60279566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60289566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60299566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6030083401c6SMatthew G. Knepley { 6031083401c6SMatthew G. Knepley DMPolytopeType ct; 6032083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60335fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60340122748bSMatthew G. Knepley 60359566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6036665f567fSMatthew G. Knepley if (lStart >= 0) { 60379566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6038412e9a14SMatthew G. Knepley switch (ct) { 6039412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6040412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6041412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6042d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6043d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6044d71ae5a4SJacob Faibussowitsch break; 6045d71ae5a4SJacob Faibussowitsch default: 6046d71ae5a4SJacob Faibussowitsch break; 6047412e9a14SMatthew G. Knepley } 6048665f567fSMatthew G. Knepley } 6049462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 605007218a29SMatthew G. Knepley if (isCohesive) { 605107218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 605207218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 605307218a29SMatthew G. Knepley } 60545fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60555fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60565fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60579566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60589566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 605907218a29SMatthew G. Knepley if (dsIn) { 606007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 606107218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 606207218a29SMatthew G. Knepley } 60635fedec97SMatthew G. Knepley } 60645fedec97SMatthew G. Knepley ++nf; 60655fedec97SMatthew G. Knepley } 60665fedec97SMatthew G. Knepley } 6067e5e52638SMatthew G. Knepley } 606807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 606907218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60709566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 607107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6072e5e52638SMatthew G. Knepley } 60739566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6074e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6075083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6076083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 607707218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6078083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6079083401c6SMatthew G. Knepley const PetscInt *fld; 60805fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60815fedec97SMatthew G. Knepley PetscBool isCohesive; 6082e5e52638SMatthew G. Knepley 60839566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60849566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60869566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6087083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6088083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60895fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6090e5e52638SMatthew G. Knepley PetscClassId id; 6091e5e52638SMatthew G. Knepley 60925fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60939566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60945fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 609507218a29SMatthew G. Knepley if (isCohesive) { 609607218a29SMatthew G. Knepley if (!isCohesiveField) { 609707218a29SMatthew G. Knepley PetscObject bdDisc; 609807218a29SMatthew G. Knepley 609907218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 610007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 610107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 610207218a29SMatthew G. Knepley } else { 61039566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 610407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 610507218a29SMatthew G. Knepley } 610607218a29SMatthew G. Knepley } else { 610707218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 610807218a29SMatthew G. Knepley } 6109083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 61109566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6111e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6112e5e52638SMatthew G. Knepley } 61139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6114e5e52638SMatthew G. Knepley } 6115f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 61169566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6117f9244615SMatthew G. Knepley if (flg) { 61183b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 61193b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 612007218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 61213b4aee56SMatthew G. Knepley PetscInt Nf, f; 61223b4aee56SMatthew G. Knepley 61239566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 612407218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 612507218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 612607218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 612707218a29SMatthew G. Knepley } 61283b4aee56SMatthew G. Knepley } 6129f9244615SMatthew G. Knepley } 6130e5e52638SMatthew G. Knepley /* Setup DSes */ 6131e5e52638SMatthew G. Knepley if (doSetup) { 613207218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6133cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6134cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6135cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6136cf1363e4SMatthew G. Knepley } 613707218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 613807218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 613907218a29SMatthew G. Knepley } 6140e5e52638SMatthew G. Knepley } 61413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6142e5e52638SMatthew G. Knepley } 6143e5e52638SMatthew G. Knepley 6144e5e52638SMatthew G. Knepley /*@ 6145d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6146d2b2dc1eSMatthew G. Knepley 6147d2b2dc1eSMatthew G. Knepley Input Parameters: 6148d2b2dc1eSMatthew G. Knepley + dm - The DM 6149d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6150d2b2dc1eSMatthew G. Knepley 6151d2b2dc1eSMatthew G. Knepley Level: developer 6152d2b2dc1eSMatthew G. Knepley 6153d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6154d2b2dc1eSMatthew G. Knepley @*/ 6155d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6156d2b2dc1eSMatthew G. Knepley { 6157d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6158d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6159d2b2dc1eSMatthew G. Knepley 6160d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6161d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6162d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6163d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6164d2b2dc1eSMatthew G. Knepley PetscObject obj; 6165d2b2dc1eSMatthew G. Knepley PetscClassId id; 6166d2b2dc1eSMatthew G. Knepley 6167d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6168d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6169d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6170d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6171d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6172d2b2dc1eSMatthew G. Knepley 6173d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6174d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6175d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6176d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6177d2b2dc1eSMatthew G. Knepley } 6178d2b2dc1eSMatthew G. Knepley if (tensor) { 6179d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6180d2b2dc1eSMatthew G. Knepley } else { 6181d2b2dc1eSMatthew G. Knepley PetscSection s; 6182d2b2dc1eSMatthew G. Knepley 6183d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6184d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6185d2b2dc1eSMatthew G. Knepley } 6186d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6187d2b2dc1eSMatthew G. Knepley } 6188d2b2dc1eSMatthew G. Knepley 6189d2b2dc1eSMatthew G. Knepley /*@ 6190bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61917f96f943SMatthew G. Knepley 619220f4b53cSBarry Smith Collective 6193f2cacb80SMatthew G. Knepley 61947f96f943SMatthew G. Knepley Input Parameters: 6195bb7acecfSBarry Smith + dm - The `DM` 61967f96f943SMatthew G. Knepley - time - The time 61977f96f943SMatthew G. Knepley 61987f96f943SMatthew G. Knepley Output Parameters: 619920f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 620020f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 620120f4b53cSBarry Smith 620220f4b53cSBarry Smith Level: developer 62037f96f943SMatthew G. Knepley 6204bb7acecfSBarry Smith Note: 6205bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 62067f96f943SMatthew G. Knepley 62071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 62087f96f943SMatthew G. Knepley @*/ 6209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6210d71ae5a4SJacob Faibussowitsch { 62117f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 62127f96f943SMatthew G. Knepley void **ectxs; 6213f60fa741SMatthew G. Knepley Vec locu, locu_t; 62147f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 62157f96f943SMatthew G. Knepley 62167f96f943SMatthew G. Knepley PetscFunctionBegin; 6217f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6218f60fa741SMatthew G. Knepley if (u) { 6219f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6220f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6221f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6222f60fa741SMatthew G. Knepley } 6223f60fa741SMatthew G. Knepley if (u_t) { 6224f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6225f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6226f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6227f60fa741SMatthew G. Knepley } 62289566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62309566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62317f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62327f96f943SMatthew G. Knepley PetscDS ds; 62337f96f943SMatthew G. Knepley DMLabel label; 62347f96f943SMatthew G. Knepley IS fieldIS; 62357f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62367f96f943SMatthew G. Knepley PetscInt dsNf, f; 62377f96f943SMatthew G. Knepley 623807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62399566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62419566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62429566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6243f2cacb80SMatthew G. Knepley if (u) { 6244f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6245f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6246f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62477f96f943SMatthew G. Knepley } 6248f2cacb80SMatthew G. Knepley if (u_t) { 62499566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62509566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6251f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6252f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6253f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6254f2cacb80SMatthew G. Knepley } 62559566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6256f2cacb80SMatthew G. Knepley } 6257f2cacb80SMatthew G. Knepley if (u) { 62589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62599566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6260f2cacb80SMatthew G. Knepley } 6261f2cacb80SMatthew G. Knepley if (u_t) { 62629566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62639566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6264f2cacb80SMatthew G. Knepley } 62659566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6266f60fa741SMatthew G. Knepley if (u) { 6267f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6268f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6269f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6270f60fa741SMatthew G. Knepley } 6271f60fa741SMatthew G. Knepley if (u_t) { 6272f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6273f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6274f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6275f60fa741SMatthew G. Knepley } 62763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62777f96f943SMatthew G. Knepley } 62787f96f943SMatthew G. Knepley 6279bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6280d71ae5a4SJacob Faibussowitsch { 628107218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 628245480ffeSMatthew G. Knepley 628345480ffeSMatthew G. Knepley PetscFunctionBegin; 62849566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6285bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 628607218a29SMatthew G. Knepley if (dsIn) { 628707218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6288bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 628945480ffeSMatthew G. Knepley } 629007218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62919566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 629207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 629445480ffeSMatthew G. Knepley } 629545480ffeSMatthew G. Knepley 62967f96f943SMatthew G. Knepley /*@ 6297bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6298e5e52638SMatthew G. Knepley 629920f4b53cSBarry Smith Collective 6300e5e52638SMatthew G. Knepley 6301bb4b53efSMatthew G. Knepley Input Parameters: 6302bb4b53efSMatthew G. Knepley + dm - The `DM` 6303bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6304bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6305e5e52638SMatthew G. Knepley 6306e5e52638SMatthew G. Knepley Output Parameter: 6307bb7acecfSBarry Smith . newdm - The `DM` 6308e5e52638SMatthew G. Knepley 6309e5e52638SMatthew G. Knepley Level: advanced 6310e5e52638SMatthew G. Knepley 63111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6312e5e52638SMatthew G. Knepley @*/ 6313bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6314d71ae5a4SJacob Faibussowitsch { 6315e5e52638SMatthew G. Knepley PetscInt Nds, s; 6316e5e52638SMatthew G. Knepley 6317e5e52638SMatthew G. Knepley PetscFunctionBegin; 63183ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 63199566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 63209566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6321e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6322e5e52638SMatthew G. Knepley DMLabel label; 6323b3cf3223SMatthew G. Knepley IS fields; 632407218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6325783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6326e5e52638SMatthew G. Knepley 632707218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6328b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6329bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6330d5b43468SJose E. Roman /* Complete new labels in the new DS */ 633107218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63329566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6333783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6334b8025e53SMatthew G. Knepley PetscWeakForm wf; 633545480ffeSMatthew G. Knepley DMLabel label; 6336783e2ec8SMatthew G. Knepley PetscInt field; 6337783e2ec8SMatthew G. Knepley 63389566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63399566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6340783e2ec8SMatthew G. Knepley } 6341e5e52638SMatthew G. Knepley } 6342799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6344e5e52638SMatthew G. Knepley } 6345e5e52638SMatthew G. Knepley 6346e5e52638SMatthew G. Knepley /*@ 6347bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6348e5e52638SMatthew G. Knepley 634920f4b53cSBarry Smith Collective 6350e5e52638SMatthew G. Knepley 6351e5e52638SMatthew G. Knepley Input Parameter: 6352bb7acecfSBarry Smith . dm - The `DM` 6353e5e52638SMatthew G. Knepley 6354e5e52638SMatthew G. Knepley Output Parameter: 6355bb7acecfSBarry Smith . newdm - The `DM` 6356e5e52638SMatthew G. Knepley 6357e5e52638SMatthew G. Knepley Level: advanced 6358e5e52638SMatthew G. Knepley 635973ff1848SBarry Smith Developer Note: 6360bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6361bb7acecfSBarry Smith 63621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6363e5e52638SMatthew G. Knepley @*/ 6364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6365d71ae5a4SJacob Faibussowitsch { 6366e5e52638SMatthew G. Knepley PetscFunctionBegin; 6367bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6368bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6370e5e52638SMatthew G. Knepley } 6371e5e52638SMatthew G. Knepley 6372c73cfb54SMatthew G. Knepley /*@ 6373bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6374c73cfb54SMatthew G. Knepley 637520f4b53cSBarry Smith Not Collective 6376c73cfb54SMatthew G. Knepley 6377c73cfb54SMatthew G. Knepley Input Parameter: 6378bb7acecfSBarry Smith . dm - The `DM` 6379c73cfb54SMatthew G. Knepley 6380c73cfb54SMatthew G. Knepley Output Parameter: 6381c73cfb54SMatthew G. Knepley . dim - The topological dimension 6382c73cfb54SMatthew G. Knepley 6383c73cfb54SMatthew G. Knepley Level: beginner 6384c73cfb54SMatthew G. Knepley 63851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6386c73cfb54SMatthew G. Knepley @*/ 6387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6388d71ae5a4SJacob Faibussowitsch { 6389c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6390c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63914f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6392c73cfb54SMatthew G. Knepley *dim = dm->dim; 63933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6394c73cfb54SMatthew G. Knepley } 6395c73cfb54SMatthew G. Knepley 6396c73cfb54SMatthew G. Knepley /*@ 6397bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6398c73cfb54SMatthew G. Knepley 639920f4b53cSBarry Smith Collective 6400c73cfb54SMatthew G. Knepley 6401c73cfb54SMatthew G. Knepley Input Parameters: 6402bb7acecfSBarry Smith + dm - The `DM` 6403c73cfb54SMatthew G. Knepley - dim - The topological dimension 6404c73cfb54SMatthew G. Knepley 6405c73cfb54SMatthew G. Knepley Level: beginner 6406c73cfb54SMatthew G. Knepley 64071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6408c73cfb54SMatthew G. Knepley @*/ 6409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6410d71ae5a4SJacob Faibussowitsch { 6411e5e52638SMatthew G. Knepley PetscDS ds; 641245480ffeSMatthew G. Knepley PetscInt Nds, n; 6413f17e8794SMatthew G. Knepley 6414c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6415c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6416c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6417c73cfb54SMatthew G. Knepley dm->dim = dim; 6418d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 64199566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 642045480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 642107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 64229566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 642345480ffeSMatthew G. Knepley } 6424d17bd122SMatthew G. Knepley } 64253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6426c73cfb54SMatthew G. Knepley } 6427c73cfb54SMatthew G. Knepley 6428793f3fe5SMatthew G. Knepley /*@ 6429793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6430793f3fe5SMatthew G. Knepley 643120f4b53cSBarry Smith Collective 6432793f3fe5SMatthew G. Knepley 6433793f3fe5SMatthew G. Knepley Input Parameters: 6434bb7acecfSBarry Smith + dm - the `DM` 6435793f3fe5SMatthew G. Knepley - dim - the dimension 6436793f3fe5SMatthew G. Knepley 6437793f3fe5SMatthew G. Knepley Output Parameters: 6438793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6439aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6440793f3fe5SMatthew G. Knepley 644120f4b53cSBarry Smith Level: intermediate 644220f4b53cSBarry Smith 6443793f3fe5SMatthew G. Knepley Note: 6444793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6445a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6446793f3fe5SMatthew G. Knepley then the interval is empty. 6447793f3fe5SMatthew G. Knepley 64481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6449793f3fe5SMatthew G. Knepley @*/ 6450d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6451d71ae5a4SJacob Faibussowitsch { 6452793f3fe5SMatthew G. Knepley PetscInt d; 6453793f3fe5SMatthew G. Knepley 6454793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6455793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64569566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64577a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6458dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6460793f3fe5SMatthew G. Knepley } 6461793f3fe5SMatthew G. Knepley 64626636e97aSMatthew G Knepley /*@ 6463bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6464f4d763aaSMatthew G. Knepley 646520f4b53cSBarry Smith Collective 64668f700142SStefano Zampini 6467f4d763aaSMatthew G. Knepley Input Parameter: 6468bb7acecfSBarry Smith . dm - The original `DM` 6469f4d763aaSMatthew G. Knepley 6470f4d763aaSMatthew G. Knepley Output Parameter: 6471bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6472f4d763aaSMatthew G. Knepley 6473f4d763aaSMatthew G. Knepley Level: intermediate 6474f4d763aaSMatthew G. Knepley 6475bb7acecfSBarry Smith Note: 6476bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6477bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6478bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6479bb7acecfSBarry Smith 64801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6481f4d763aaSMatthew G. Knepley @*/ 6482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6483d71ae5a4SJacob Faibussowitsch { 6484c26acbdeSMatthew G. Knepley PetscSection section; 6485eb9d3e4dSMatthew G. Knepley IS perm; 6486eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 648714f150ffSMatthew G. Knepley 648814f150ffSMatthew G. Knepley PetscFunctionBegin; 648914f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64904f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64919566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64929566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6493eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6494eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6495462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6496eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6497c26acbdeSMatthew G. Knepley *odm = dm; 64983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6499c26acbdeSMatthew G. Knepley } 650014f150ffSMatthew G. Knepley if (!dm->dmBC) { 6501c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 650214f150ffSMatthew G. Knepley PetscSF sf; 6503eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 650414f150ffSMatthew G. Knepley 65059566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 65069566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 65079566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 65089566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 65099566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 65109566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6511eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 65129566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 65139566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 651414f150ffSMatthew G. Knepley } 651514f150ffSMatthew G. Knepley *odm = dm->dmBC; 65163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 651714f150ffSMatthew G. Knepley } 6518f4d763aaSMatthew G. Knepley 6519f4d763aaSMatthew G. Knepley /*@ 6520cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6521f4d763aaSMatthew G. Knepley 6522f4d763aaSMatthew G. Knepley Input Parameter: 6523bb7acecfSBarry Smith . dm - The original `DM` 6524f4d763aaSMatthew G. Knepley 6525cdb7a50dSMatthew G. Knepley Output Parameters: 6526cdb7a50dSMatthew G. Knepley + num - The output sequence number 6527cdb7a50dSMatthew G. Knepley - val - The output sequence value 6528f4d763aaSMatthew G. Knepley 6529f4d763aaSMatthew G. Knepley Level: intermediate 6530f4d763aaSMatthew G. Knepley 6531bb7acecfSBarry Smith Note: 6532bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6533bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6534bb7acecfSBarry Smith 653573ff1848SBarry Smith Developer Note: 6536bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6537bb7acecfSBarry Smith not directly related to the `DM`. 6538f4d763aaSMatthew G. Knepley 65391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6540f4d763aaSMatthew G. Knepley @*/ 6541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6542d71ae5a4SJacob Faibussowitsch { 6543f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6544f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65459371c9d4SSatish Balay if (num) { 65464f572ea9SToby Isaac PetscAssertPointer(num, 2); 65479371c9d4SSatish Balay *num = dm->outputSequenceNum; 65489371c9d4SSatish Balay } 65499371c9d4SSatish Balay if (val) { 65504f572ea9SToby Isaac PetscAssertPointer(val, 3); 65519371c9d4SSatish Balay *val = dm->outputSequenceVal; 65529371c9d4SSatish Balay } 65533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6554f4d763aaSMatthew G. Knepley } 6555f4d763aaSMatthew G. Knepley 6556f4d763aaSMatthew G. Knepley /*@ 6557cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6558f4d763aaSMatthew G. Knepley 6559f4d763aaSMatthew G. Knepley Input Parameters: 6560bb7acecfSBarry Smith + dm - The original `DM` 6561cdb7a50dSMatthew G. Knepley . num - The output sequence number 6562cdb7a50dSMatthew G. Knepley - val - The output sequence value 6563f4d763aaSMatthew G. Knepley 6564f4d763aaSMatthew G. Knepley Level: intermediate 6565f4d763aaSMatthew G. Knepley 6566bb7acecfSBarry Smith Note: 6567bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6568bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6569f4d763aaSMatthew G. Knepley 65701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6571f4d763aaSMatthew G. Knepley @*/ 6572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6573d71ae5a4SJacob Faibussowitsch { 6574f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6575f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6576f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6577cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6579cdb7a50dSMatthew G. Knepley } 6580cdb7a50dSMatthew G. Knepley 65815d83a8b1SBarry Smith /*@ 6582bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6583cdb7a50dSMatthew G. Knepley 6584cdb7a50dSMatthew G. Knepley Input Parameters: 6585bb7acecfSBarry Smith + dm - The original `DM` 6586b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6587cdb7a50dSMatthew G. Knepley . name - The sequence name 6588cdb7a50dSMatthew G. Knepley - num - The output sequence number 6589cdb7a50dSMatthew G. Knepley 6590cdb7a50dSMatthew G. Knepley Output Parameter: 6591cdb7a50dSMatthew G. Knepley . val - The output sequence value 6592cdb7a50dSMatthew G. Knepley 6593cdb7a50dSMatthew G. Knepley Level: intermediate 6594cdb7a50dSMatthew G. Knepley 6595bb7acecfSBarry Smith Note: 6596bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6597bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6598bb7acecfSBarry Smith 659973ff1848SBarry Smith Developer Note: 6600bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6601cdb7a50dSMatthew G. Knepley 66021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6603cdb7a50dSMatthew G. Knepley @*/ 6604b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6605d71ae5a4SJacob Faibussowitsch { 6606cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6607cdb7a50dSMatthew G. Knepley 6608cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6609cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6610cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6611b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 66124f572ea9SToby Isaac PetscAssertPointer(val, 5); 66139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6614cdb7a50dSMatthew G. Knepley if (ishdf5) { 6615cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6616cdb7a50dSMatthew G. Knepley PetscScalar value; 6617cdb7a50dSMatthew G. Knepley 66189566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 66194aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6620cdb7a50dSMatthew G. Knepley #endif 6621cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 66223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6623f4d763aaSMatthew G. Knepley } 66248e4ac7eaSMatthew G. Knepley 66258e4ac7eaSMatthew G. Knepley /*@ 6626b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6627b2033f5dSMatthew G. Knepley 6628b2033f5dSMatthew G. Knepley Input Parameters: 6629b2033f5dSMatthew G. Knepley + dm - The original `DM` 6630b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6631b2033f5dSMatthew G. Knepley - name - The sequence name 6632b2033f5dSMatthew G. Knepley 6633b2033f5dSMatthew G. Knepley Output Parameter: 6634b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6635b2033f5dSMatthew G. Knepley 6636b2033f5dSMatthew G. Knepley Level: intermediate 6637b2033f5dSMatthew G. Knepley 6638b2033f5dSMatthew G. Knepley Note: 6639b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6640b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6641b2033f5dSMatthew G. Knepley 6642b2033f5dSMatthew G. Knepley Developer Note: 6643b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6644b2033f5dSMatthew G. Knepley 6645b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6646b2033f5dSMatthew G. Knepley @*/ 6647b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6648b2033f5dSMatthew G. Knepley { 6649b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6650b2033f5dSMatthew G. Knepley 6651b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6652b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6653b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6654b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6655b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6656b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6657b2033f5dSMatthew G. Knepley if (ishdf5) { 6658b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6659b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6660b2033f5dSMatthew G. Knepley #endif 6661b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6662b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6663b2033f5dSMatthew G. Knepley } 6664b2033f5dSMatthew G. Knepley 6665b2033f5dSMatthew G. Knepley /*@ 6666bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66678e4ac7eaSMatthew G. Knepley 666820f4b53cSBarry Smith Not Collective 66698e4ac7eaSMatthew G. Knepley 66708e4ac7eaSMatthew G. Knepley Input Parameter: 6671bb7acecfSBarry Smith . dm - The `DM` 66728e4ac7eaSMatthew G. Knepley 66738e4ac7eaSMatthew G. Knepley Output Parameter: 6674bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66758e4ac7eaSMatthew G. Knepley 66768e4ac7eaSMatthew G. Knepley Level: beginner 66778e4ac7eaSMatthew G. Knepley 66781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66798e4ac7eaSMatthew G. Knepley @*/ 6680d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6681d71ae5a4SJacob Faibussowitsch { 66828e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66838e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66844f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66858e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66878e4ac7eaSMatthew G. Knepley } 66888e4ac7eaSMatthew G. Knepley 66898e4ac7eaSMatthew G. Knepley /*@ 6690bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66918e4ac7eaSMatthew G. Knepley 669220f4b53cSBarry Smith Collective 66938e4ac7eaSMatthew G. Knepley 66948e4ac7eaSMatthew G. Knepley Input Parameters: 6695bb7acecfSBarry Smith + dm - The `DM` 6696bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66978e4ac7eaSMatthew G. Knepley 669873ff1848SBarry Smith Level: beginner 669973ff1848SBarry Smith 6700bb7acecfSBarry Smith Note: 6701bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 67025d3b26e6SMatthew G. Knepley 67031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 67048e4ac7eaSMatthew G. Knepley @*/ 6705d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6706d71ae5a4SJacob Faibussowitsch { 67078e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67088e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67098833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 67108e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 67113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67128e4ac7eaSMatthew G. Knepley } 6713c58f1c22SToby Isaac 6714cc4c1da9SBarry Smith /*@ 6715bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6716c58f1c22SToby Isaac 6717c58f1c22SToby Isaac Not Collective 6718c58f1c22SToby Isaac 6719c58f1c22SToby Isaac Input Parameters: 6720bb7acecfSBarry Smith + dm - The `DM` object 6721c58f1c22SToby Isaac - name - The label name 6722c58f1c22SToby Isaac 6723c58f1c22SToby Isaac Level: intermediate 6724c58f1c22SToby Isaac 67251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6726c58f1c22SToby Isaac @*/ 6727d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6728d71ae5a4SJacob Faibussowitsch { 67295d80c0bfSVaclav Hapla PetscBool flg; 67305d80c0bfSVaclav Hapla DMLabel label; 6731c58f1c22SToby Isaac 6732c58f1c22SToby Isaac PetscFunctionBegin; 6733c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67344f572ea9SToby Isaac PetscAssertPointer(name, 2); 67359566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6736c58f1c22SToby Isaac if (!flg) { 67379566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67389566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67399566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6740c58f1c22SToby Isaac } 67413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6742c58f1c22SToby Isaac } 6743c58f1c22SToby Isaac 6744cc4c1da9SBarry Smith /*@ 6745bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67460fdc7489SMatthew Knepley 67470fdc7489SMatthew Knepley Not Collective 67480fdc7489SMatthew Knepley 67490fdc7489SMatthew Knepley Input Parameters: 6750bb7acecfSBarry Smith + dm - The `DM` object 67510fdc7489SMatthew Knepley . l - The index for the label 67520fdc7489SMatthew Knepley - name - The label name 67530fdc7489SMatthew Knepley 67540fdc7489SMatthew Knepley Level: intermediate 67550fdc7489SMatthew Knepley 67561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67570fdc7489SMatthew Knepley @*/ 6758d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6759d71ae5a4SJacob Faibussowitsch { 67600fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67610fdc7489SMatthew Knepley DMLabel label; 67620fdc7489SMatthew Knepley PetscInt Nl, m; 67630fdc7489SMatthew Knepley PetscBool flg, match; 67640fdc7489SMatthew Knepley const char *lname; 67650fdc7489SMatthew Knepley 67660fdc7489SMatthew Knepley PetscFunctionBegin; 67670fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67684f572ea9SToby Isaac PetscAssertPointer(name, 3); 67699566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67700fdc7489SMatthew Knepley if (!flg) { 67719566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67729566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67740fdc7489SMatthew Knepley } 67759566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 677663a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67770fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67800fdc7489SMatthew Knepley if (match) break; 67810fdc7489SMatthew Knepley } 67823ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67830fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67840fdc7489SMatthew Knepley else prev->next = orig->next; 67850fdc7489SMatthew Knepley if (!l) { 67860fdc7489SMatthew Knepley orig->next = dm->labels; 67870fdc7489SMatthew Knepley dm->labels = orig; 67880fdc7489SMatthew Knepley } else { 6789fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67900fdc7489SMatthew Knepley orig->next = prev->next; 67910fdc7489SMatthew Knepley prev->next = orig; 67920fdc7489SMatthew Knepley } 67933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67940fdc7489SMatthew Knepley } 67950fdc7489SMatthew Knepley 6796cc4c1da9SBarry Smith /*@ 6797bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6798c58f1c22SToby Isaac 6799c58f1c22SToby Isaac Not Collective 6800c58f1c22SToby Isaac 6801c58f1c22SToby Isaac Input Parameters: 6802bb7acecfSBarry Smith + dm - The `DM` object 6803c58f1c22SToby Isaac . name - The label name 6804c58f1c22SToby Isaac - point - The mesh point 6805c58f1c22SToby Isaac 6806c58f1c22SToby Isaac Output Parameter: 6807c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6808c58f1c22SToby Isaac 6809c58f1c22SToby Isaac Level: beginner 6810c58f1c22SToby Isaac 68111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6812c58f1c22SToby Isaac @*/ 6813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6814d71ae5a4SJacob Faibussowitsch { 6815c58f1c22SToby Isaac DMLabel label; 6816c58f1c22SToby Isaac 6817c58f1c22SToby Isaac PetscFunctionBegin; 6818c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68194f572ea9SToby Isaac PetscAssertPointer(name, 2); 68209566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68217a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 68229566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 68233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6824c58f1c22SToby Isaac } 6825c58f1c22SToby Isaac 6826cc4c1da9SBarry Smith /*@ 6827bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6828c58f1c22SToby Isaac 6829c58f1c22SToby Isaac Not Collective 6830c58f1c22SToby Isaac 6831c58f1c22SToby Isaac Input Parameters: 6832bb7acecfSBarry Smith + dm - The `DM` object 6833c58f1c22SToby Isaac . name - The label name 6834c58f1c22SToby Isaac . point - The mesh point 6835c58f1c22SToby Isaac - value - The label value for this point 6836c58f1c22SToby Isaac 6837c58f1c22SToby Isaac Output Parameter: 6838c58f1c22SToby Isaac 6839c58f1c22SToby Isaac Level: beginner 6840c58f1c22SToby Isaac 68411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6842c58f1c22SToby Isaac @*/ 6843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6844d71ae5a4SJacob Faibussowitsch { 6845c58f1c22SToby Isaac DMLabel label; 6846c58f1c22SToby Isaac 6847c58f1c22SToby Isaac PetscFunctionBegin; 6848c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68494f572ea9SToby Isaac PetscAssertPointer(name, 2); 68509566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6851c58f1c22SToby Isaac if (!label) { 68529566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68539566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6854c58f1c22SToby Isaac } 68559566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6857c58f1c22SToby Isaac } 6858c58f1c22SToby Isaac 6859cc4c1da9SBarry Smith /*@ 6860bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6861c58f1c22SToby Isaac 6862c58f1c22SToby Isaac Not Collective 6863c58f1c22SToby Isaac 6864c58f1c22SToby Isaac Input Parameters: 6865bb7acecfSBarry Smith + dm - The `DM` object 6866c58f1c22SToby Isaac . name - The label name 6867c58f1c22SToby Isaac . point - The mesh point 6868c58f1c22SToby Isaac - value - The label value for this point 6869c58f1c22SToby Isaac 6870c58f1c22SToby Isaac Level: beginner 6871c58f1c22SToby Isaac 68721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6873c58f1c22SToby Isaac @*/ 6874d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6875d71ae5a4SJacob Faibussowitsch { 6876c58f1c22SToby Isaac DMLabel label; 6877c58f1c22SToby Isaac 6878c58f1c22SToby Isaac PetscFunctionBegin; 6879c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68804f572ea9SToby Isaac PetscAssertPointer(name, 2); 68819566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68823ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68839566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6885c58f1c22SToby Isaac } 6886c58f1c22SToby Isaac 6887cc4c1da9SBarry Smith /*@ 6888bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6889c58f1c22SToby Isaac 6890c58f1c22SToby Isaac Not Collective 6891c58f1c22SToby Isaac 6892c58f1c22SToby Isaac Input Parameters: 6893bb7acecfSBarry Smith + dm - The `DM` object 6894c58f1c22SToby Isaac - name - The label name 6895c58f1c22SToby Isaac 6896c58f1c22SToby Isaac Output Parameter: 6897c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6898c58f1c22SToby Isaac 6899c58f1c22SToby Isaac Level: beginner 6900c58f1c22SToby Isaac 690173ff1848SBarry Smith Developer Note: 6902bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6903bb7acecfSBarry Smith 69041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6905c58f1c22SToby Isaac @*/ 6906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6907d71ae5a4SJacob Faibussowitsch { 6908c58f1c22SToby Isaac DMLabel label; 6909c58f1c22SToby Isaac 6910c58f1c22SToby Isaac PetscFunctionBegin; 6911c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69124f572ea9SToby Isaac PetscAssertPointer(name, 2); 69134f572ea9SToby Isaac PetscAssertPointer(size, 3); 69149566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6915c58f1c22SToby Isaac *size = 0; 69163ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69179566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 69183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6919c58f1c22SToby Isaac } 6920c58f1c22SToby Isaac 6921cc4c1da9SBarry Smith /*@ 6922bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6923c58f1c22SToby Isaac 6924c58f1c22SToby Isaac Not Collective 6925c58f1c22SToby Isaac 6926c58f1c22SToby Isaac Input Parameters: 692760225df5SJacob Faibussowitsch + dm - The `DM` object 6928c58f1c22SToby Isaac - name - The label name 6929c58f1c22SToby Isaac 6930c58f1c22SToby Isaac Output Parameter: 693120f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6932c58f1c22SToby Isaac 6933c58f1c22SToby Isaac Level: beginner 6934c58f1c22SToby Isaac 69351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6936c58f1c22SToby Isaac @*/ 6937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6938d71ae5a4SJacob Faibussowitsch { 6939c58f1c22SToby Isaac DMLabel label; 6940c58f1c22SToby Isaac 6941c58f1c22SToby Isaac PetscFunctionBegin; 6942c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69434f572ea9SToby Isaac PetscAssertPointer(name, 2); 69444f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69459566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6946c58f1c22SToby Isaac *ids = NULL; 6947dab2e251SBlaise Bourdin if (label) { 69489566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6949dab2e251SBlaise Bourdin } else { 6950dab2e251SBlaise Bourdin /* returning an empty IS */ 69519566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6952dab2e251SBlaise Bourdin } 69533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6954c58f1c22SToby Isaac } 6955c58f1c22SToby Isaac 6956cc4c1da9SBarry Smith /*@ 6957c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6958c58f1c22SToby Isaac 6959c58f1c22SToby Isaac Not Collective 6960c58f1c22SToby Isaac 6961c58f1c22SToby Isaac Input Parameters: 6962bb7acecfSBarry Smith + dm - The `DM` object 6963b6971eaeSBarry Smith . name - The label name of the stratum 6964c58f1c22SToby Isaac - value - The stratum value 6965c58f1c22SToby Isaac 6966c58f1c22SToby Isaac Output Parameter: 6967bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6968c58f1c22SToby Isaac 6969c58f1c22SToby Isaac Level: beginner 6970c58f1c22SToby Isaac 69711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6972c58f1c22SToby Isaac @*/ 6973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6974d71ae5a4SJacob Faibussowitsch { 6975c58f1c22SToby Isaac DMLabel label; 6976c58f1c22SToby Isaac 6977c58f1c22SToby Isaac PetscFunctionBegin; 6978c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69794f572ea9SToby Isaac PetscAssertPointer(name, 2); 69804f572ea9SToby Isaac PetscAssertPointer(size, 4); 69819566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6982c58f1c22SToby Isaac *size = 0; 69833ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69849566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6986c58f1c22SToby Isaac } 6987c58f1c22SToby Isaac 6988cc4c1da9SBarry Smith /*@ 6989c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6990c58f1c22SToby Isaac 6991c58f1c22SToby Isaac Not Collective 6992c58f1c22SToby Isaac 6993c58f1c22SToby Isaac Input Parameters: 6994bb7acecfSBarry Smith + dm - The `DM` object 6995c58f1c22SToby Isaac . name - The label name 6996c58f1c22SToby Isaac - value - The stratum value 6997c58f1c22SToby Isaac 6998c58f1c22SToby Isaac Output Parameter: 699920f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 7000c58f1c22SToby Isaac 7001c58f1c22SToby Isaac Level: beginner 7002c58f1c22SToby Isaac 70031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 7004c58f1c22SToby Isaac @*/ 7005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 7006d71ae5a4SJacob Faibussowitsch { 7007c58f1c22SToby Isaac DMLabel label; 7008c58f1c22SToby Isaac 7009c58f1c22SToby Isaac PetscFunctionBegin; 7010c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70114f572ea9SToby Isaac PetscAssertPointer(name, 2); 70124f572ea9SToby Isaac PetscAssertPointer(points, 4); 70139566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7014c58f1c22SToby Isaac *points = NULL; 70153ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70169566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 70173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7018c58f1c22SToby Isaac } 7019c58f1c22SToby Isaac 7020cc4c1da9SBarry Smith /*@ 70219044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 70224de306b1SToby Isaac 70234de306b1SToby Isaac Not Collective 70244de306b1SToby Isaac 70254de306b1SToby Isaac Input Parameters: 7026bb7acecfSBarry Smith + dm - The `DM` object 70274de306b1SToby Isaac . name - The label name 70284de306b1SToby Isaac . value - The stratum value 70294de306b1SToby Isaac - points - The stratum points 70304de306b1SToby Isaac 70314de306b1SToby Isaac Level: beginner 70324de306b1SToby Isaac 70331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70344de306b1SToby Isaac @*/ 7035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7036d71ae5a4SJacob Faibussowitsch { 70374de306b1SToby Isaac DMLabel label; 70384de306b1SToby Isaac 70394de306b1SToby Isaac PetscFunctionBegin; 70404de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70414f572ea9SToby Isaac PetscAssertPointer(name, 2); 7042292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70439566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70443ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70459566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70474de306b1SToby Isaac } 70484de306b1SToby Isaac 7049cc4c1da9SBarry Smith /*@ 7050bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7051c58f1c22SToby Isaac 7052c58f1c22SToby Isaac Not Collective 7053c58f1c22SToby Isaac 7054c58f1c22SToby Isaac Input Parameters: 7055bb7acecfSBarry Smith + dm - The `DM` object 7056c58f1c22SToby Isaac . name - The label name 7057c58f1c22SToby Isaac - value - The label value for this point 7058c58f1c22SToby Isaac 7059c58f1c22SToby Isaac Output Parameter: 7060c58f1c22SToby Isaac 7061c58f1c22SToby Isaac Level: beginner 7062c58f1c22SToby Isaac 70631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7064c58f1c22SToby Isaac @*/ 7065d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7066d71ae5a4SJacob Faibussowitsch { 7067c58f1c22SToby Isaac DMLabel label; 7068c58f1c22SToby Isaac 7069c58f1c22SToby Isaac PetscFunctionBegin; 7070c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70714f572ea9SToby Isaac PetscAssertPointer(name, 2); 70729566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70733ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70749566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7076c58f1c22SToby Isaac } 7077c58f1c22SToby Isaac 7078c58f1c22SToby Isaac /*@ 7079bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7080c58f1c22SToby Isaac 7081c58f1c22SToby Isaac Not Collective 7082c58f1c22SToby Isaac 7083c58f1c22SToby Isaac Input Parameter: 7084bb7acecfSBarry Smith . dm - The `DM` object 7085c58f1c22SToby Isaac 7086c58f1c22SToby Isaac Output Parameter: 7087c58f1c22SToby Isaac . numLabels - the number of Labels 7088c58f1c22SToby Isaac 7089c58f1c22SToby Isaac Level: intermediate 7090c58f1c22SToby Isaac 70911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7092c58f1c22SToby Isaac @*/ 7093d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7094d71ae5a4SJacob Faibussowitsch { 70955d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7096c58f1c22SToby Isaac PetscInt n = 0; 7097c58f1c22SToby Isaac 7098c58f1c22SToby Isaac PetscFunctionBegin; 7099c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71004f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 71019371c9d4SSatish Balay while (next) { 71029371c9d4SSatish Balay ++n; 71039371c9d4SSatish Balay next = next->next; 71049371c9d4SSatish Balay } 7105c58f1c22SToby Isaac *numLabels = n; 71063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7107c58f1c22SToby Isaac } 7108c58f1c22SToby Isaac 7109cc4c1da9SBarry Smith /*@ 7110c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7111c58f1c22SToby Isaac 7112c58f1c22SToby Isaac Not Collective 7113c58f1c22SToby Isaac 7114c58f1c22SToby Isaac Input Parameters: 7115bb7acecfSBarry Smith + dm - The `DM` object 7116c58f1c22SToby Isaac - n - the label number 7117c58f1c22SToby Isaac 7118c58f1c22SToby Isaac Output Parameter: 7119c58f1c22SToby Isaac . name - the label name 7120c58f1c22SToby Isaac 7121c58f1c22SToby Isaac Level: intermediate 7122c58f1c22SToby Isaac 712373ff1848SBarry Smith Developer Note: 7124bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7125bb7acecfSBarry Smith 71261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7127c58f1c22SToby Isaac @*/ 7128cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7129d71ae5a4SJacob Faibussowitsch { 71305d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7131c58f1c22SToby Isaac PetscInt l = 0; 7132c58f1c22SToby Isaac 7133c58f1c22SToby Isaac PetscFunctionBegin; 7134c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71354f572ea9SToby Isaac PetscAssertPointer(name, 3); 7136c58f1c22SToby Isaac while (next) { 7137c58f1c22SToby Isaac if (l == n) { 71389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7140c58f1c22SToby Isaac } 7141c58f1c22SToby Isaac ++l; 7142c58f1c22SToby Isaac next = next->next; 7143c58f1c22SToby Isaac } 714463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7145c58f1c22SToby Isaac } 7146c58f1c22SToby Isaac 7147cc4c1da9SBarry Smith /*@ 7148bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7149c58f1c22SToby Isaac 7150c58f1c22SToby Isaac Not Collective 7151c58f1c22SToby Isaac 7152c58f1c22SToby Isaac Input Parameters: 7153bb7acecfSBarry Smith + dm - The `DM` object 7154c58f1c22SToby Isaac - name - The label name 7155c58f1c22SToby Isaac 7156c58f1c22SToby Isaac Output Parameter: 7157bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7158c58f1c22SToby Isaac 7159c58f1c22SToby Isaac Level: intermediate 7160c58f1c22SToby Isaac 71611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7162c58f1c22SToby Isaac @*/ 7163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7164d71ae5a4SJacob Faibussowitsch { 71655d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7166d67d17b1SMatthew G. Knepley const char *lname; 7167c58f1c22SToby Isaac 7168c58f1c22SToby Isaac PetscFunctionBegin; 7169c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71704f572ea9SToby Isaac PetscAssertPointer(name, 2); 71714f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7172c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7173c58f1c22SToby Isaac while (next) { 71749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71759566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7176c58f1c22SToby Isaac if (*hasLabel) break; 7177c58f1c22SToby Isaac next = next->next; 7178c58f1c22SToby Isaac } 71793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7180c58f1c22SToby Isaac } 7181c58f1c22SToby Isaac 7182a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7183cc4c1da9SBarry Smith /*@ 718420f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7185c58f1c22SToby Isaac 7186c58f1c22SToby Isaac Not Collective 7187c58f1c22SToby Isaac 7188c58f1c22SToby Isaac Input Parameters: 7189bb7acecfSBarry Smith + dm - The `DM` object 7190c58f1c22SToby Isaac - name - The label name 7191c58f1c22SToby Isaac 7192c58f1c22SToby Isaac Output Parameter: 719320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7194c58f1c22SToby Isaac 7195bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7196bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7197bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7198bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7199bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7200bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7201bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72026d7c9049SMatthew G. Knepley 7203c58f1c22SToby Isaac Level: intermediate 7204c58f1c22SToby Isaac 720560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7206c58f1c22SToby Isaac @*/ 7207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7208d71ae5a4SJacob Faibussowitsch { 72095d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7210c58f1c22SToby Isaac PetscBool hasLabel; 7211d67d17b1SMatthew G. Knepley const char *lname; 7212c58f1c22SToby Isaac 7213c58f1c22SToby Isaac PetscFunctionBegin; 7214c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72154f572ea9SToby Isaac PetscAssertPointer(name, 2); 72164f572ea9SToby Isaac PetscAssertPointer(label, 3); 7217c58f1c22SToby Isaac *label = NULL; 7218c58f1c22SToby Isaac while (next) { 72199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72209566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7221c58f1c22SToby Isaac if (hasLabel) { 7222c58f1c22SToby Isaac *label = next->label; 7223c58f1c22SToby Isaac break; 7224c58f1c22SToby Isaac } 7225c58f1c22SToby Isaac next = next->next; 7226c58f1c22SToby Isaac } 72273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7228c58f1c22SToby Isaac } 7229c58f1c22SToby Isaac 7230cc4c1da9SBarry Smith /*@ 7231bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7232c58f1c22SToby Isaac 7233c58f1c22SToby Isaac Not Collective 7234c58f1c22SToby Isaac 7235c58f1c22SToby Isaac Input Parameters: 7236bb7acecfSBarry Smith + dm - The `DM` object 7237c58f1c22SToby Isaac - n - the label number 7238c58f1c22SToby Isaac 7239c58f1c22SToby Isaac Output Parameter: 7240c58f1c22SToby Isaac . label - the label 7241c58f1c22SToby Isaac 7242c58f1c22SToby Isaac Level: intermediate 7243c58f1c22SToby Isaac 72441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7245c58f1c22SToby Isaac @*/ 7246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7247d71ae5a4SJacob Faibussowitsch { 72485d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7249c58f1c22SToby Isaac PetscInt l = 0; 7250c58f1c22SToby Isaac 7251c58f1c22SToby Isaac PetscFunctionBegin; 7252c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72534f572ea9SToby Isaac PetscAssertPointer(label, 3); 7254c58f1c22SToby Isaac while (next) { 7255c58f1c22SToby Isaac if (l == n) { 7256c58f1c22SToby Isaac *label = next->label; 72573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7258c58f1c22SToby Isaac } 7259c58f1c22SToby Isaac ++l; 7260c58f1c22SToby Isaac next = next->next; 7261c58f1c22SToby Isaac } 726263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7263c58f1c22SToby Isaac } 7264c58f1c22SToby Isaac 7265cc4c1da9SBarry Smith /*@ 7266bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7267c58f1c22SToby Isaac 7268c58f1c22SToby Isaac Not Collective 7269c58f1c22SToby Isaac 7270c58f1c22SToby Isaac Input Parameters: 7271bb7acecfSBarry Smith + dm - The `DM` object 7272bb7acecfSBarry Smith - label - The `DMLabel` 7273c58f1c22SToby Isaac 7274c58f1c22SToby Isaac Level: developer 7275c58f1c22SToby Isaac 727660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7277c58f1c22SToby Isaac @*/ 7278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7279d71ae5a4SJacob Faibussowitsch { 72805d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7281c58f1c22SToby Isaac PetscBool hasLabel; 7282d67d17b1SMatthew G. Knepley const char *lname; 72835d80c0bfSVaclav Hapla PetscBool flg; 7284c58f1c22SToby Isaac 7285c58f1c22SToby Isaac PetscFunctionBegin; 7286c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72889566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72897a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7291c58f1c22SToby Isaac tmpLabel->label = label; 7292c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72935d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72945d80c0bfSVaclav Hapla *p = tmpLabel; 72959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72975d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7299ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7301c58f1c22SToby Isaac } 7302c58f1c22SToby Isaac 7303a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7304cc4c1da9SBarry Smith /*@ 73054a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 73064a7ee7d0SMatthew G. Knepley 73074a7ee7d0SMatthew G. Knepley Not Collective 73084a7ee7d0SMatthew G. Knepley 73094a7ee7d0SMatthew G. Knepley Input Parameters: 7310bb7acecfSBarry Smith + dm - The `DM` object 7311bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 73124a7ee7d0SMatthew G. Knepley 7313bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7314bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7315bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7316bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7317bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7318bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7319bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 73204a7ee7d0SMatthew G. Knepley 73214a7ee7d0SMatthew G. Knepley Level: intermediate 73224a7ee7d0SMatthew G. Knepley 73231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 73244a7ee7d0SMatthew G. Knepley @*/ 7325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7326d71ae5a4SJacob Faibussowitsch { 73274a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73284a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73294a7ee7d0SMatthew G. Knepley const char *name, *lname; 73304a7ee7d0SMatthew G. Knepley 73314a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73324a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73334a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73354a7ee7d0SMatthew G. Knepley while (next) { 73369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73384a7ee7d0SMatthew G. Knepley if (hasLabel) { 73399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73414a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73429566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73434a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73449566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73454a7ee7d0SMatthew G. Knepley next->label = label; 73464a7ee7d0SMatthew G. Knepley break; 73474a7ee7d0SMatthew G. Knepley } 73484a7ee7d0SMatthew G. Knepley next = next->next; 73494a7ee7d0SMatthew G. Knepley } 73503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73514a7ee7d0SMatthew G. Knepley } 73524a7ee7d0SMatthew G. Knepley 7353cc4c1da9SBarry Smith /*@ 7354bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7355c58f1c22SToby Isaac 7356c58f1c22SToby Isaac Not Collective 7357c58f1c22SToby Isaac 7358c58f1c22SToby Isaac Input Parameters: 7359bb7acecfSBarry Smith + dm - The `DM` object 7360c58f1c22SToby Isaac - name - The label name 7361c58f1c22SToby Isaac 7362c58f1c22SToby Isaac Output Parameter: 736320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7364bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7365c58f1c22SToby Isaac 7366c58f1c22SToby Isaac Level: developer 7367c58f1c22SToby Isaac 73681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7369c58f1c22SToby Isaac @*/ 7370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7371d71ae5a4SJacob Faibussowitsch { 737295d578d6SVaclav Hapla DMLabelLink link, *pnext; 7373c58f1c22SToby Isaac PetscBool hasLabel; 7374d67d17b1SMatthew G. Knepley const char *lname; 7375c58f1c22SToby Isaac 7376c58f1c22SToby Isaac PetscFunctionBegin; 7377c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73784f572ea9SToby Isaac PetscAssertPointer(name, 2); 7379e5472504SVaclav Hapla if (label) { 73804f572ea9SToby Isaac PetscAssertPointer(label, 3); 7381c58f1c22SToby Isaac *label = NULL; 7382e5472504SVaclav Hapla } 73835d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7386c58f1c22SToby Isaac if (hasLabel) { 738795d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73889566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 738995d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73909566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7391ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 739295d578d6SVaclav Hapla if (label) *label = link->label; 73939566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73949566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7395c58f1c22SToby Isaac break; 7396c58f1c22SToby Isaac } 7397c58f1c22SToby Isaac } 73983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7399c58f1c22SToby Isaac } 7400c58f1c22SToby Isaac 7401306894acSVaclav Hapla /*@ 7402bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7403306894acSVaclav Hapla 7404306894acSVaclav Hapla Not Collective 7405306894acSVaclav Hapla 7406306894acSVaclav Hapla Input Parameters: 7407bb7acecfSBarry Smith + dm - The `DM` object 7408bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 740920f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7410306894acSVaclav Hapla 7411306894acSVaclav Hapla Level: developer 7412306894acSVaclav Hapla 7413bb7acecfSBarry Smith Note: 7414306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7415bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7416306894acSVaclav Hapla *label nullified. 7417306894acSVaclav Hapla 74181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7419306894acSVaclav Hapla @*/ 7420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7421d71ae5a4SJacob Faibussowitsch { 742243e45a93SVaclav Hapla DMLabelLink link, *pnext; 7423306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7424306894acSVaclav Hapla 7425306894acSVaclav Hapla PetscFunctionBegin; 7426306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74274f572ea9SToby Isaac PetscAssertPointer(label, 2); 74283ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7429306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7430306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74315d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 743243e45a93SVaclav Hapla if (*label == link->label) { 7433306894acSVaclav Hapla hasLabel = PETSC_TRUE; 743443e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7435306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7436ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 743743e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74389566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74399566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7440306894acSVaclav Hapla break; 7441306894acSVaclav Hapla } 7442306894acSVaclav Hapla } 74437a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7445306894acSVaclav Hapla } 7446306894acSVaclav Hapla 7447cc4c1da9SBarry Smith /*@ 7448c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7449c58f1c22SToby Isaac 7450c58f1c22SToby Isaac Not Collective 7451c58f1c22SToby Isaac 7452c58f1c22SToby Isaac Input Parameters: 7453bb7acecfSBarry Smith + dm - The `DM` object 7454c58f1c22SToby Isaac - name - The label name 7455c58f1c22SToby Isaac 7456c58f1c22SToby Isaac Output Parameter: 7457c58f1c22SToby Isaac . output - The flag for output 7458c58f1c22SToby Isaac 7459c58f1c22SToby Isaac Level: developer 7460c58f1c22SToby Isaac 74611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7462c58f1c22SToby Isaac @*/ 7463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7464d71ae5a4SJacob Faibussowitsch { 74655d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7466d67d17b1SMatthew G. Knepley const char *lname; 7467c58f1c22SToby Isaac 7468c58f1c22SToby Isaac PetscFunctionBegin; 7469c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74704f572ea9SToby Isaac PetscAssertPointer(name, 2); 74714f572ea9SToby Isaac PetscAssertPointer(output, 3); 7472c58f1c22SToby Isaac while (next) { 7473c58f1c22SToby Isaac PetscBool flg; 7474c58f1c22SToby Isaac 74759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74779371c9d4SSatish Balay if (flg) { 74789371c9d4SSatish Balay *output = next->output; 74793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74809371c9d4SSatish Balay } 7481c58f1c22SToby Isaac next = next->next; 7482c58f1c22SToby Isaac } 748398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7484c58f1c22SToby Isaac } 7485c58f1c22SToby Isaac 7486cc4c1da9SBarry Smith /*@ 7487bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7488c58f1c22SToby Isaac 7489c58f1c22SToby Isaac Not Collective 7490c58f1c22SToby Isaac 7491c58f1c22SToby Isaac Input Parameters: 7492bb7acecfSBarry Smith + dm - The `DM` object 7493c58f1c22SToby Isaac . name - The label name 7494bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7495c58f1c22SToby Isaac 7496c58f1c22SToby Isaac Level: developer 7497c58f1c22SToby Isaac 74981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7499c58f1c22SToby Isaac @*/ 7500d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7501d71ae5a4SJacob Faibussowitsch { 75025d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7503d67d17b1SMatthew G. Knepley const char *lname; 7504c58f1c22SToby Isaac 7505c58f1c22SToby Isaac PetscFunctionBegin; 7506c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75074f572ea9SToby Isaac PetscAssertPointer(name, 2); 7508c58f1c22SToby Isaac while (next) { 7509c58f1c22SToby Isaac PetscBool flg; 7510c58f1c22SToby Isaac 75119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 75129566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 75139371c9d4SSatish Balay if (flg) { 75149371c9d4SSatish Balay next->output = output; 75153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75169371c9d4SSatish Balay } 7517c58f1c22SToby Isaac next = next->next; 7518c58f1c22SToby Isaac } 751998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7520c58f1c22SToby Isaac } 7521c58f1c22SToby Isaac 7522c58f1c22SToby Isaac /*@ 7523bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7524c58f1c22SToby Isaac 752520f4b53cSBarry Smith Collective 7526c58f1c22SToby Isaac 7527d8d19677SJose E. Roman Input Parameters: 7528bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7529bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7530bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7531bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7532bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7533c58f1c22SToby Isaac 7534c58f1c22SToby Isaac Level: intermediate 7535c58f1c22SToby Isaac 7536bb7acecfSBarry Smith Note: 75372cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7538c58f1c22SToby Isaac 75391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7540c58f1c22SToby Isaac @*/ 7541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7542d71ae5a4SJacob Faibussowitsch { 75432cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7544c58f1c22SToby Isaac const char *name; 7545c58f1c22SToby Isaac PetscBool flg; 75465d80c0bfSVaclav Hapla DMLabelLink link; 7547c58f1c22SToby Isaac 75485d80c0bfSVaclav Hapla PetscFunctionBegin; 75495d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75505d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75515d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75525d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75537a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75543ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75555d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75565d80c0bfSVaclav Hapla label = link->label; 75579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75585d80c0bfSVaclav Hapla if (!all) { 75599566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7560c58f1c22SToby Isaac if (flg) continue; 75619566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75627d5acc75SStefano Zampini if (flg) continue; 75639566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7564ba2698f1SMatthew G. Knepley if (flg) continue; 75655d80c0bfSVaclav Hapla } 75669566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75672cbb9b06SVaclav Hapla if (labelOld) { 75682cbb9b06SVaclav Hapla switch (emode) { 7569d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7570d71ae5a4SJacob Faibussowitsch continue; 7571d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7572d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7573d71ae5a4SJacob Faibussowitsch break; 7574d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7575d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7576d71ae5a4SJacob Faibussowitsch default: 7577d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75782cbb9b06SVaclav Hapla } 75792cbb9b06SVaclav Hapla } 75805d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75819566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75825d80c0bfSVaclav Hapla } else { 75835d80c0bfSVaclav Hapla labelNew = label; 75845d80c0bfSVaclav Hapla } 75859566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75869566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7587c58f1c22SToby Isaac } 75883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7589c58f1c22SToby Isaac } 7590461a15a0SLisandro Dalcin 7591609dae6eSVaclav Hapla /*@C 7592b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7593609dae6eSVaclav Hapla 759420f4b53cSBarry Smith Collective; No Fortran Support 7595609dae6eSVaclav Hapla 7596609dae6eSVaclav Hapla Input Parameters: 7597bb7acecfSBarry Smith + dm0 - First `DM` object 7598bb7acecfSBarry Smith - dm1 - Second `DM` object 7599609dae6eSVaclav Hapla 7600a4e35b19SJacob Faibussowitsch Output Parameters: 76015efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 760220f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7603609dae6eSVaclav Hapla 7604609dae6eSVaclav Hapla Level: intermediate 7605609dae6eSVaclav Hapla 7606609dae6eSVaclav Hapla Notes: 7607bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7608bb7acecfSBarry Smith 760920f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7610bb7acecfSBarry Smith 761120f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7612609dae6eSVaclav Hapla 76135efe38ccSVaclav Hapla The output message is set independently on each rank. 7614bb7acecfSBarry Smith 7615bb7acecfSBarry Smith message must be freed with `PetscFree()` 7616bb7acecfSBarry Smith 761720f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7618bb7acecfSBarry Smith 761920f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7620609dae6eSVaclav Hapla 7621609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7622bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7623609dae6eSVaclav Hapla 7624cc4c1da9SBarry Smith Developer Note: 7625cc4c1da9SBarry Smith Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7626cc4c1da9SBarry Smith 76271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7628609dae6eSVaclav Hapla @*/ 7629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7630d71ae5a4SJacob Faibussowitsch { 76315efe38ccSVaclav Hapla PetscInt n, i; 7632609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76335efe38ccSVaclav Hapla PetscBool eq; 7634609dae6eSVaclav Hapla MPI_Comm comm; 76355efe38ccSVaclav Hapla PetscMPIInt rank; 7636609dae6eSVaclav Hapla 7637609dae6eSVaclav Hapla PetscFunctionBegin; 7638609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7639609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7640609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76414f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76424f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76439566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76455efe38ccSVaclav Hapla { 76465efe38ccSVaclav Hapla PetscInt n1; 76475efe38ccSVaclav Hapla 76489566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76499566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76505efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 765148a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7652462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76535efe38ccSVaclav Hapla if (!eq) goto finish; 76545efe38ccSVaclav Hapla } 76555efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7656609dae6eSVaclav Hapla DMLabel l0, l1; 7657609dae6eSVaclav Hapla const char *name; 7658609dae6eSVaclav Hapla char *msgInner; 7659609dae6eSVaclav Hapla 7660609dae6eSVaclav Hapla /* Ignore label order */ 76619566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7664609dae6eSVaclav Hapla if (!l1) { 766563a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76665efe38ccSVaclav Hapla eq = PETSC_FALSE; 76675efe38ccSVaclav Hapla break; 7668609dae6eSVaclav Hapla } 76699566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76709566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76719566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76725efe38ccSVaclav Hapla if (!eq) break; 7673609dae6eSVaclav Hapla } 7674462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7675609dae6eSVaclav Hapla finish: 76765efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7677609dae6eSVaclav Hapla if (message) { 7678609dae6eSVaclav Hapla *message = NULL; 767948a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76805efe38ccSVaclav Hapla } else { 768148a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 76829566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76835efe38ccSVaclav Hapla } 76845efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76855efe38ccSVaclav Hapla if (equal) *equal = eq; 76867a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7688609dae6eSVaclav Hapla } 7689609dae6eSVaclav Hapla 7690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7691d71ae5a4SJacob Faibussowitsch { 7692461a15a0SLisandro Dalcin PetscFunctionBegin; 76934f572ea9SToby Isaac PetscAssertPointer(label, 2); 7694461a15a0SLisandro Dalcin if (!*label) { 76959566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76969566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7697461a15a0SLisandro Dalcin } 76989566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7700461a15a0SLisandro Dalcin } 7701461a15a0SLisandro Dalcin 77020fdc7489SMatthew Knepley /* 77030fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 77040fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 77050fdc7489SMatthew Knepley (label, id) pair in the DM. 77060fdc7489SMatthew Knepley 77070fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 77080fdc7489SMatthew Knepley each label. 77090fdc7489SMatthew Knepley */ 7710d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7711d71ae5a4SJacob Faibussowitsch { 77120fdc7489SMatthew Knepley DMUniversalLabel ul; 77130fdc7489SMatthew Knepley PetscBool *active; 77140fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 77150fdc7489SMatthew Knepley 77160fdc7489SMatthew Knepley PetscFunctionBegin; 77179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 77189566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 77199566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 77209566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 77210fdc7489SMatthew Knepley ul->Nl = 0; 77220fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77230fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 77240fdc7489SMatthew Knepley const char *name; 77250fdc7489SMatthew Knepley 77269566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77279566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77289566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77290fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77300fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77310fdc7489SMatthew Knepley } 77329566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77330fdc7489SMatthew Knepley ul->Nv = 0; 77340fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77350fdc7489SMatthew Knepley DMLabel label; 77360fdc7489SMatthew Knepley PetscInt nv; 77370fdc7489SMatthew Knepley const char *name; 77380fdc7489SMatthew Knepley 77390fdc7489SMatthew Knepley if (!active[l]) continue; 77409566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77419566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77429566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77439566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77440fdc7489SMatthew Knepley ul->indices[m] = l; 77450fdc7489SMatthew Knepley ul->Nv += nv; 77460fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77470fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77480fdc7489SMatthew Knepley ++m; 77490fdc7489SMatthew Knepley } 77500fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77510fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77520fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77530fdc7489SMatthew Knepley } 77540fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77550fdc7489SMatthew Knepley PetscInt b; 77560fdc7489SMatthew Knepley 77570fdc7489SMatthew Knepley ul->masks[l] = 0; 77580fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77590fdc7489SMatthew Knepley } 77609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77610fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77620fdc7489SMatthew Knepley DMLabel label; 77630fdc7489SMatthew Knepley IS valueIS; 77640fdc7489SMatthew Knepley const PetscInt *varr; 77650fdc7489SMatthew Knepley PetscInt nv, v; 77660fdc7489SMatthew Knepley 77670fdc7489SMatthew Knepley if (!active[l]) continue; 77689566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77699566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77709566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7772ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77759566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77760fdc7489SMatthew Knepley ++m; 77770fdc7489SMatthew Knepley } 77789566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77790fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77800fdc7489SMatthew Knepley PetscInt uval = 0; 77810fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 77820fdc7489SMatthew Knepley 77830fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77840fdc7489SMatthew Knepley DMLabel label; 77850649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77860fdc7489SMatthew Knepley 77870fdc7489SMatthew Knepley if (!active[l]) continue; 77889566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77909566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77919371c9d4SSatish Balay if (val == defval) { 77929371c9d4SSatish Balay ++m; 77939371c9d4SSatish Balay continue; 77949371c9d4SSatish Balay } 77950649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77960fdc7489SMatthew Knepley marked = PETSC_TRUE; 77979566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 779863a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77990fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 78000fdc7489SMatthew Knepley ++m; 78010fdc7489SMatthew Knepley } 78029566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 78030fdc7489SMatthew Knepley } 78049566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 78050fdc7489SMatthew Knepley *universal = ul; 78063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78070fdc7489SMatthew Knepley } 78080fdc7489SMatthew Knepley 7809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7810d71ae5a4SJacob Faibussowitsch { 78110fdc7489SMatthew Knepley PetscInt l; 78120fdc7489SMatthew Knepley 78130fdc7489SMatthew Knepley PetscFunctionBegin; 78149566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 78159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 78169566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 78179566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 78189566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 78190fdc7489SMatthew Knepley *universal = NULL; 78203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78210fdc7489SMatthew Knepley } 78220fdc7489SMatthew Knepley 7823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7824d71ae5a4SJacob Faibussowitsch { 78250fdc7489SMatthew Knepley PetscFunctionBegin; 78264f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 78270fdc7489SMatthew Knepley *ulabel = ul->label; 78283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78290fdc7489SMatthew Knepley } 78300fdc7489SMatthew Knepley 7831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7832d71ae5a4SJacob Faibussowitsch { 78330fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78340fdc7489SMatthew Knepley 78350fdc7489SMatthew Knepley PetscFunctionBegin; 7836064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78370fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78389566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78399566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78400fdc7489SMatthew Knepley } 78410fdc7489SMatthew Knepley if (preserveOrder) { 78420fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78430fdc7489SMatthew Knepley const char *name; 78440fdc7489SMatthew Knepley PetscBool match; 78450fdc7489SMatthew Knepley 78469566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 784863a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78490fdc7489SMatthew Knepley } 78500fdc7489SMatthew Knepley } 78513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78520fdc7489SMatthew Knepley } 78530fdc7489SMatthew Knepley 7854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7855d71ae5a4SJacob Faibussowitsch { 78560fdc7489SMatthew Knepley PetscInt l; 78570fdc7489SMatthew Knepley 78580fdc7489SMatthew Knepley PetscFunctionBegin; 78590fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78600fdc7489SMatthew Knepley DMLabel label; 78610fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78620fdc7489SMatthew Knepley 78630fdc7489SMatthew Knepley if (lval) { 78649566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78659566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78669566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78670fdc7489SMatthew Knepley } 78680fdc7489SMatthew Knepley } 78693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78700fdc7489SMatthew Knepley } 7871a8fb8f29SToby Isaac 7872a8fb8f29SToby Isaac /*@ 7873bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7874bb7acecfSBarry Smith 787520f4b53cSBarry Smith Not Collective 7876a8fb8f29SToby Isaac 7877a8fb8f29SToby Isaac Input Parameter: 7878bb7acecfSBarry Smith . dm - The `DM` object 7879a8fb8f29SToby Isaac 7880a8fb8f29SToby Isaac Output Parameter: 7881bb7acecfSBarry Smith . cdm - The coarse `DM` 7882a8fb8f29SToby Isaac 7883a8fb8f29SToby Isaac Level: intermediate 7884a8fb8f29SToby Isaac 78851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7886a8fb8f29SToby Isaac @*/ 7887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7888d71ae5a4SJacob Faibussowitsch { 7889a8fb8f29SToby Isaac PetscFunctionBegin; 7890a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78914f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7892a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7894a8fb8f29SToby Isaac } 7895a8fb8f29SToby Isaac 7896a8fb8f29SToby Isaac /*@ 7897bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7898a8fb8f29SToby Isaac 7899a8fb8f29SToby Isaac Input Parameters: 7900bb7acecfSBarry Smith + dm - The `DM` object 7901bb7acecfSBarry Smith - cdm - The coarse `DM` 7902a8fb8f29SToby Isaac 7903a8fb8f29SToby Isaac Level: intermediate 7904a8fb8f29SToby Isaac 7905bb7acecfSBarry Smith Note: 7906bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7907bb7acecfSBarry Smith 79081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7909a8fb8f29SToby Isaac @*/ 7910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7911d71ae5a4SJacob Faibussowitsch { 7912a8fb8f29SToby Isaac PetscFunctionBegin; 7913a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7914a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 791589d734beSBarry Smith if (dm == cdm) cdm = NULL; 79169566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 79179566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7918a8fb8f29SToby Isaac dm->coarseMesh = cdm; 79193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7920a8fb8f29SToby Isaac } 7921a8fb8f29SToby Isaac 792288bdff64SToby Isaac /*@ 7923bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 792488bdff64SToby Isaac 792588bdff64SToby Isaac Input Parameter: 7926bb7acecfSBarry Smith . dm - The `DM` object 792788bdff64SToby Isaac 792888bdff64SToby Isaac Output Parameter: 7929bb7acecfSBarry Smith . fdm - The fine `DM` 793088bdff64SToby Isaac 793188bdff64SToby Isaac Level: intermediate 793288bdff64SToby Isaac 79331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 793488bdff64SToby Isaac @*/ 7935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7936d71ae5a4SJacob Faibussowitsch { 793788bdff64SToby Isaac PetscFunctionBegin; 793888bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79394f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 794088bdff64SToby Isaac *fdm = dm->fineMesh; 79413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 794288bdff64SToby Isaac } 794388bdff64SToby Isaac 794488bdff64SToby Isaac /*@ 7945bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 794688bdff64SToby Isaac 794788bdff64SToby Isaac Input Parameters: 7948bb7acecfSBarry Smith + dm - The `DM` object 7949bb7acecfSBarry Smith - fdm - The fine `DM` 795088bdff64SToby Isaac 7951bb7acecfSBarry Smith Level: developer 795288bdff64SToby Isaac 7953bb7acecfSBarry Smith Note: 7954bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7955bb7acecfSBarry Smith 79561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 795788bdff64SToby Isaac @*/ 7958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7959d71ae5a4SJacob Faibussowitsch { 796088bdff64SToby Isaac PetscFunctionBegin; 796188bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 796288bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 796389d734beSBarry Smith if (dm == fdm) fdm = NULL; 79649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 796688bdff64SToby Isaac dm->fineMesh = fdm; 79673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 796888bdff64SToby Isaac } 796988bdff64SToby Isaac 7970a6ba4734SToby Isaac /*@C 7971bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7972a6ba4734SToby Isaac 797320f4b53cSBarry Smith Collective 7974783e2ec8SMatthew G. Knepley 7975a6ba4734SToby Isaac Input Parameters: 7976bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7977bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7978a6ba4734SToby Isaac . name - The BC name 797945480ffeSMatthew G. Knepley . label - The label defining constrained points 7980bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 798145480ffeSMatthew G. Knepley . values - An array of values for constrained points 7982a6ba4734SToby Isaac . field - The field to constrain 798345480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7984a6ba4734SToby Isaac . comps - An array of constrained component numbers 7985a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 798656cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7987a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7988a6ba4734SToby Isaac 798945480ffeSMatthew G. Knepley Output Parameter: 799045480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 799145480ffeSMatthew G. Knepley 7992a6ba4734SToby Isaac Options Database Keys: 7993a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7994a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7995a6ba4734SToby Isaac 799620f4b53cSBarry Smith Level: intermediate 799720f4b53cSBarry Smith 7998bb7acecfSBarry Smith Notes: 7999aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 800073ff1848SBarry Smith .vb 800173ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 800273ff1848SBarry Smith .ve 800356cf3b9cSMatthew G. Knepley 8004a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 800556cf3b9cSMatthew G. Knepley 800620f4b53cSBarry Smith .vb 800720f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 800820f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 800920f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 801020f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 801120f4b53cSBarry Smith .ve 801256cf3b9cSMatthew G. Knepley + dim - the spatial dimension 801356cf3b9cSMatthew G. Knepley . Nf - the number of fields 801456cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 801556cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 801656cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 801756cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 801856cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 801956cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 802056cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 802156cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 802256cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 802356cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 802456cf3b9cSMatthew G. Knepley . t - current time 802556cf3b9cSMatthew G. Knepley . x - coordinates of the current point 802656cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 802756cf3b9cSMatthew G. Knepley . constants - constant parameters 802856cf3b9cSMatthew G. Knepley - bcval - output values at the current point 802956cf3b9cSMatthew G. Knepley 80301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8031a6ba4734SToby Isaac @*/ 8032d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8033d71ae5a4SJacob Faibussowitsch { 8034e5e52638SMatthew G. Knepley PetscDS ds; 8035a6ba4734SToby Isaac 8036a6ba4734SToby Isaac PetscFunctionBegin; 8037a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8038783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 803945480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 804045480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 804145480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 804245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 804301a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80449566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8045799db056SMatthew G. Knepley /* Complete label */ 8046799db056SMatthew G. Knepley if (label) { 8047799db056SMatthew G. Knepley PetscObject obj; 8048799db056SMatthew G. Knepley PetscClassId id; 8049799db056SMatthew G. Knepley 8050799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8051799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8052799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8053799db056SMatthew G. Knepley DM plex; 8054799db056SMatthew G. Knepley 8055799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8056799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8057799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8058799db056SMatthew G. Knepley } 8059799db056SMatthew G. Knepley } 80609566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8062a6ba4734SToby Isaac } 8063a6ba4734SToby Isaac 806445480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8065d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8066d71ae5a4SJacob Faibussowitsch { 8067e5e52638SMatthew G. Knepley PetscDS ds; 8068dff059c6SToby Isaac DMBoundary *lastnext; 8069e6f8dbb6SToby Isaac DSBoundary dsbound; 8070e6f8dbb6SToby Isaac 8071e6f8dbb6SToby Isaac PetscFunctionBegin; 80729566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8073e5e52638SMatthew G. Knepley dsbound = ds->boundary; 807447a1f5adSToby Isaac if (dm->boundary) { 807547a1f5adSToby Isaac DMBoundary next = dm->boundary; 807647a1f5adSToby Isaac 807747a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80783ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 807947a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 808047a1f5adSToby Isaac while (next) { 808147a1f5adSToby Isaac DMBoundary b = next; 808247a1f5adSToby Isaac 808347a1f5adSToby Isaac next = b->next; 80849566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8085a6ba4734SToby Isaac } 808647a1f5adSToby Isaac dm->boundary = NULL; 8087a6ba4734SToby Isaac } 808847a1f5adSToby Isaac 8089f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8090e6f8dbb6SToby Isaac while (dsbound) { 8091e6f8dbb6SToby Isaac DMBoundary dmbound; 8092e6f8dbb6SToby Isaac 80939566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8094e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 809545480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 809647a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8097dff059c6SToby Isaac *lastnext = dmbound; 8098f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8099dff059c6SToby Isaac dsbound = dsbound->next; 8100a6ba4734SToby Isaac } 81013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8102a6ba4734SToby Isaac } 8103a6ba4734SToby Isaac 8104bb7acecfSBarry Smith /* TODO: missing manual page */ 8105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8106d71ae5a4SJacob Faibussowitsch { 8107b95f2879SToby Isaac DMBoundary b; 8108a6ba4734SToby Isaac 8109a6ba4734SToby Isaac PetscFunctionBegin; 8110a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81114f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8112a6ba4734SToby Isaac *isBd = PETSC_FALSE; 81139566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8114b95f2879SToby Isaac b = dm->boundary; 811557508eceSPierre Jolivet while (b && !*isBd) { 8116e6f8dbb6SToby Isaac DMLabel label = b->label; 8117e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8118a6ba4734SToby Isaac PetscInt i; 8119a6ba4734SToby Isaac 812045480ffeSMatthew G. Knepley if (label) { 812157508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8122a6ba4734SToby Isaac } 8123a6ba4734SToby Isaac b = b->next; 8124a6ba4734SToby Isaac } 81253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8126a6ba4734SToby Isaac } 81274d6f44ffSToby Isaac 81284d6f44ffSToby Isaac /*@C 8129bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8130a6e0b375SMatthew G. Knepley 813120f4b53cSBarry Smith Collective 81324d6f44ffSToby Isaac 81334d6f44ffSToby Isaac Input Parameters: 8134bb7acecfSBarry Smith + dm - The `DM` 81350709b2feSToby Isaac . time - The time 81364d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 81374d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 81384d6f44ffSToby Isaac - mode - The insertion mode for values 81394d6f44ffSToby Isaac 81404d6f44ffSToby Isaac Output Parameter: 81414d6f44ffSToby Isaac . X - vector 81424d6f44ffSToby Isaac 814320f4b53cSBarry Smith Calling sequence of `funcs`: 81444d6f44ffSToby Isaac + dim - The spatial dimension 81458ec8862eSJed Brown . time - The time at which to sample 81464d6f44ffSToby Isaac . x - The coordinates 814777b739a6SMatthew Knepley . Nc - The number of components 81484d6f44ffSToby Isaac . u - The output field values 81494d6f44ffSToby Isaac - ctx - optional user-defined function context 81504d6f44ffSToby Isaac 81514d6f44ffSToby Isaac Level: developer 81524d6f44ffSToby Isaac 8153bb7acecfSBarry Smith Developer Notes: 8154bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8155bb7acecfSBarry Smith 8156bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8157bb7acecfSBarry Smith 81581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 81594d6f44ffSToby Isaac @*/ 8160a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8161d71ae5a4SJacob Faibussowitsch { 81624d6f44ffSToby Isaac Vec localX; 81634d6f44ffSToby Isaac 81644d6f44ffSToby Isaac PetscFunctionBegin; 81654d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8166708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 81679566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8168f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81699566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 81709566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81719566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81729566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8173708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 81743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81754d6f44ffSToby Isaac } 81764d6f44ffSToby Isaac 8177a6e0b375SMatthew G. Knepley /*@C 8178bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8179a6e0b375SMatthew G. Knepley 818020f4b53cSBarry Smith Not Collective 8181a6e0b375SMatthew G. Knepley 8182a6e0b375SMatthew G. Knepley Input Parameters: 8183bb7acecfSBarry Smith + dm - The `DM` 8184a6e0b375SMatthew G. Knepley . time - The time 8185a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8186a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8187a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8188a6e0b375SMatthew G. Knepley 8189a6e0b375SMatthew G. Knepley Output Parameter: 8190a6e0b375SMatthew G. Knepley . localX - vector 8191a6e0b375SMatthew G. Knepley 819220f4b53cSBarry Smith Calling sequence of `funcs`: 8193a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8194a4e35b19SJacob Faibussowitsch . time - The current timestep 8195a6e0b375SMatthew G. Knepley . x - The coordinates 819677b739a6SMatthew Knepley . Nc - The number of components 8197a6e0b375SMatthew G. Knepley . u - The output field values 8198a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8199a6e0b375SMatthew G. Knepley 8200a6e0b375SMatthew G. Knepley Level: developer 8201a6e0b375SMatthew G. Knepley 8202bb7acecfSBarry Smith Developer Notes: 8203bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8204bb7acecfSBarry Smith 8205bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8206bb7acecfSBarry Smith 82071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8208a6e0b375SMatthew G. Knepley @*/ 8209a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8210d71ae5a4SJacob Faibussowitsch { 82114d6f44ffSToby Isaac PetscFunctionBegin; 82124d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8213064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8214fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 82153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82164d6f44ffSToby Isaac } 82174d6f44ffSToby Isaac 8218a6e0b375SMatthew G. Knepley /*@C 8219bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8220a6e0b375SMatthew G. Knepley 822120f4b53cSBarry Smith Collective 8222a6e0b375SMatthew G. Knepley 8223a6e0b375SMatthew G. Knepley Input Parameters: 8224bb7acecfSBarry Smith + dm - The `DM` 8225a6e0b375SMatthew G. Knepley . time - The time 8226a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8227a4e35b19SJacob Faibussowitsch . ids - The ids 8228a4e35b19SJacob Faibussowitsch . Nc - The number of components 8229a4e35b19SJacob Faibussowitsch . comps - The components 8230bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8231a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8232bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8233a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8234a6e0b375SMatthew G. Knepley 8235a6e0b375SMatthew G. Knepley Output Parameter: 8236a6e0b375SMatthew G. Knepley . X - vector 8237a6e0b375SMatthew G. Knepley 823820f4b53cSBarry Smith Calling sequence of `funcs`: 8239a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8240a4e35b19SJacob Faibussowitsch . time - The current timestep 8241a6e0b375SMatthew G. Knepley . x - The coordinates 824277b739a6SMatthew Knepley . Nc - The number of components 8243a6e0b375SMatthew G. Knepley . u - The output field values 8244a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8245a6e0b375SMatthew G. Knepley 8246a6e0b375SMatthew G. Knepley Level: developer 8247a6e0b375SMatthew G. Knepley 8248bb7acecfSBarry Smith Developer Notes: 8249bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8250bb7acecfSBarry Smith 8251bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8252bb7acecfSBarry Smith 82531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8254a6e0b375SMatthew G. Knepley @*/ 8255a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8256d71ae5a4SJacob Faibussowitsch { 82572c53366bSMatthew G. Knepley Vec localX; 82582c53366bSMatthew G. Knepley 82592c53366bSMatthew G. Knepley PetscFunctionBegin; 82602c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 82619566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8262f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82639566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 82649566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82659566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82669566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 82673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82682c53366bSMatthew G. Knepley } 82692c53366bSMatthew G. Knepley 8270a6e0b375SMatthew G. Knepley /*@C 8271bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8272a6e0b375SMatthew G. Knepley 827320f4b53cSBarry Smith Not Collective 8274a6e0b375SMatthew G. Knepley 8275a6e0b375SMatthew G. Knepley Input Parameters: 8276bb7acecfSBarry Smith + dm - The `DM` 8277a6e0b375SMatthew G. Knepley . time - The time 8278bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8279a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8280a4e35b19SJacob Faibussowitsch . ids - The ids 8281a4e35b19SJacob Faibussowitsch . Nc - The number of components 8282a4e35b19SJacob Faibussowitsch . comps - The components 8283a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8284a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8285a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8286a6e0b375SMatthew G. Knepley 8287a6e0b375SMatthew G. Knepley Output Parameter: 8288a6e0b375SMatthew G. Knepley . localX - vector 8289a6e0b375SMatthew G. Knepley 829020f4b53cSBarry Smith Calling sequence of `funcs`: 8291a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8292a4e35b19SJacob Faibussowitsch . time - The current time 8293a6e0b375SMatthew G. Knepley . x - The coordinates 829477b739a6SMatthew Knepley . Nc - The number of components 8295a6e0b375SMatthew G. Knepley . u - The output field values 8296a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8297a6e0b375SMatthew G. Knepley 8298a6e0b375SMatthew G. Knepley Level: developer 8299a6e0b375SMatthew G. Knepley 8300bb7acecfSBarry Smith Developer Notes: 8301bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8302bb7acecfSBarry Smith 8303bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8304bb7acecfSBarry Smith 83051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8306a6e0b375SMatthew G. Knepley @*/ 8307a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8308d71ae5a4SJacob Faibussowitsch { 83094d6f44ffSToby Isaac PetscFunctionBegin; 83104d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8311064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8312fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 83133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83144d6f44ffSToby Isaac } 83152716604bSToby Isaac 8316a6e0b375SMatthew G. Knepley /*@C 8317bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8318a6e0b375SMatthew G. Knepley 831920f4b53cSBarry Smith Not Collective 8320a6e0b375SMatthew G. Knepley 8321a6e0b375SMatthew G. Knepley Input Parameters: 8322bb7acecfSBarry Smith + dm - The `DM` 8323a6e0b375SMatthew G. Knepley . time - The time 832420f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8325a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8326a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8327a6e0b375SMatthew G. Knepley 8328a6e0b375SMatthew G. Knepley Output Parameter: 8329a6e0b375SMatthew G. Knepley . localX - The output vector 8330a6e0b375SMatthew G. Knepley 833120f4b53cSBarry Smith Calling sequence of `funcs`: 8332a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8333a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8334a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8335a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8336a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8337a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8338a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8339a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8340a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8341a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8342a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8343a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8344a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8345a6e0b375SMatthew G. Knepley . t - The current time 8346a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8347a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8348a6e0b375SMatthew G. Knepley . constants - The value of each constant 8349a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8350a6e0b375SMatthew G. Knepley 835173ff1848SBarry Smith Level: intermediate 835273ff1848SBarry Smith 8353bb7acecfSBarry Smith Note: 8354bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8355bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8356bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8357a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8358a6e0b375SMatthew G. Knepley 8359bb7acecfSBarry Smith Developer Notes: 8360bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8361bb7acecfSBarry Smith 8362bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8363bb7acecfSBarry Smith 8364a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8365a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8366a6e0b375SMatthew G. Knepley @*/ 8367a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8368d71ae5a4SJacob Faibussowitsch { 83698c6c5593SMatthew G. Knepley PetscFunctionBegin; 83708c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8371eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 83728c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8373fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 83743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83758c6c5593SMatthew G. Knepley } 83768c6c5593SMatthew G. Knepley 8377a6e0b375SMatthew G. Knepley /*@C 8378a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8379a6e0b375SMatthew G. Knepley 838020f4b53cSBarry Smith Not Collective 8381a6e0b375SMatthew G. Knepley 8382a6e0b375SMatthew G. Knepley Input Parameters: 8383bb7acecfSBarry Smith + dm - The `DM` 8384a6e0b375SMatthew G. Knepley . time - The time 8385bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8386a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8387a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8388bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 838920f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8390a6e0b375SMatthew G. Knepley . localU - The input field vector 8391a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8392a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8393a6e0b375SMatthew G. Knepley 8394a6e0b375SMatthew G. Knepley Output Parameter: 8395a6e0b375SMatthew G. Knepley . localX - The output vector 8396a6e0b375SMatthew G. Knepley 839720f4b53cSBarry Smith Calling sequence of `funcs`: 8398a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8399a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8400a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8401a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8402a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8403a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8404a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8405a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8406a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8407a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8408a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8409a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8410a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8411a6e0b375SMatthew G. Knepley . t - The current time 8412a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8413a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8414a6e0b375SMatthew G. Knepley . constants - The value of each constant 8415a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8416a6e0b375SMatthew G. Knepley 841773ff1848SBarry Smith Level: intermediate 841873ff1848SBarry Smith 8419bb7acecfSBarry Smith Note: 8420bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8421bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8422bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8423a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8424a6e0b375SMatthew G. Knepley 8425bb7acecfSBarry Smith Developer Notes: 8426bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8427bb7acecfSBarry Smith 8428bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8429bb7acecfSBarry Smith 84301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8431a6e0b375SMatthew G. Knepley @*/ 8432a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8433d71ae5a4SJacob Faibussowitsch { 84348c6c5593SMatthew G. Knepley PetscFunctionBegin; 84358c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8436064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8437064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8438fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84408c6c5593SMatthew G. Knepley } 84418c6c5593SMatthew G. Knepley 84422716604bSToby Isaac /*@C 8443d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8444d29d7c6eSMatthew G. Knepley 844520f4b53cSBarry Smith Not Collective 8446d29d7c6eSMatthew G. Knepley 8447d29d7c6eSMatthew G. Knepley Input Parameters: 8448bb7acecfSBarry Smith + dm - The `DM` 8449d29d7c6eSMatthew G. Knepley . time - The time 8450bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8451d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8452d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8453bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 845420f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8455d29d7c6eSMatthew G. Knepley . U - The input field vector 8456d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8457d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8458d29d7c6eSMatthew G. Knepley 8459d29d7c6eSMatthew G. Knepley Output Parameter: 8460d29d7c6eSMatthew G. Knepley . X - The output vector 8461d29d7c6eSMatthew G. Knepley 846220f4b53cSBarry Smith Calling sequence of `funcs`: 8463d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8464d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8465d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8466d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8467d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8468d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8469d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8470d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8471d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8472d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8473d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8474d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8475d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8476d29d7c6eSMatthew G. Knepley . t - The current time 8477d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8478d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8479d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8480d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8481d29d7c6eSMatthew G. Knepley 848273ff1848SBarry Smith Level: intermediate 848373ff1848SBarry Smith 8484bb7acecfSBarry Smith Note: 8485bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8486bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8487bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8488d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8489d29d7c6eSMatthew G. Knepley 8490bb7acecfSBarry Smith Developer Notes: 8491bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8492bb7acecfSBarry Smith 8493bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8494bb7acecfSBarry Smith 84951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8496d29d7c6eSMatthew G. Knepley @*/ 8497a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8498d71ae5a4SJacob Faibussowitsch { 8499d29d7c6eSMatthew G. Knepley DM dmIn; 8500d29d7c6eSMatthew G. Knepley Vec localU, localX; 8501d29d7c6eSMatthew G. Knepley 8502d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8503d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8504d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8505d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8506d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8507f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 850872fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 850972fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8510d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8511d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8512d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8513d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8514d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 85153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8516d29d7c6eSMatthew G. Knepley } 8517d29d7c6eSMatthew G. Knepley 8518d29d7c6eSMatthew G. Knepley /*@C 8519ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8520ece3a9fcSMatthew G. Knepley 852120f4b53cSBarry Smith Not Collective 8522ece3a9fcSMatthew G. Knepley 8523ece3a9fcSMatthew G. Knepley Input Parameters: 8524bb7acecfSBarry Smith + dm - The `DM` 8525ece3a9fcSMatthew G. Knepley . time - The time 8526bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8527ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8528ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8529bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 853020f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8531ece3a9fcSMatthew G. Knepley . localU - The input field vector 8532ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8533ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8534ece3a9fcSMatthew G. Knepley 8535ece3a9fcSMatthew G. Knepley Output Parameter: 8536ece3a9fcSMatthew G. Knepley . localX - The output vector 8537ece3a9fcSMatthew G. Knepley 853820f4b53cSBarry Smith Calling sequence of `funcs`: 8539ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8540ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8541ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8542ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8543ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8544ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8545ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8546ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8547ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8548ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8549ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8550ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8551ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8552ece3a9fcSMatthew G. Knepley . t - The current time 8553ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8554ece3a9fcSMatthew G. Knepley . n - The face normal 8555ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8556ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8557ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8558ece3a9fcSMatthew G. Knepley 855973ff1848SBarry Smith Level: intermediate 856073ff1848SBarry Smith 8561ece3a9fcSMatthew G. Knepley Note: 8562bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8563bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8564bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8565ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8566ece3a9fcSMatthew G. Knepley 8567bb7acecfSBarry Smith Developer Notes: 8568bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8569bb7acecfSBarry Smith 8570bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8571bb7acecfSBarry Smith 85721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8573ece3a9fcSMatthew G. Knepley @*/ 8574a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8575d71ae5a4SJacob Faibussowitsch { 8576ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8577ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8578064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8579064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8580fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8582ece3a9fcSMatthew G. Knepley } 8583ece3a9fcSMatthew G. Knepley 8584ece3a9fcSMatthew G. Knepley /*@C 85852716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85862716604bSToby Isaac 858720f4b53cSBarry Smith Collective 8588bb7acecfSBarry Smith 85892716604bSToby Isaac Input Parameters: 8590bb7acecfSBarry Smith + dm - The `DM` 85910709b2feSToby Isaac . time - The time 85922716604bSToby Isaac . funcs - The functions to evaluate for each field component 85932716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8594574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85952716604bSToby Isaac 85962716604bSToby Isaac Output Parameter: 85972716604bSToby Isaac . diff - The diff ||u - u_h||_2 85982716604bSToby Isaac 85992716604bSToby Isaac Level: developer 86002716604bSToby Isaac 8601bb7acecfSBarry Smith Developer Notes: 8602bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8603bb7acecfSBarry Smith 8604bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8605bb7acecfSBarry Smith 86061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 86072716604bSToby Isaac @*/ 8608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8609d71ae5a4SJacob Faibussowitsch { 86102716604bSToby Isaac PetscFunctionBegin; 86112716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8612b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8613fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 86143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86152716604bSToby Isaac } 8616b698f381SToby Isaac 8617b698f381SToby Isaac /*@C 8618b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8619b698f381SToby Isaac 862020f4b53cSBarry Smith Collective 8621d083f849SBarry Smith 8622b698f381SToby Isaac Input Parameters: 8623bb7acecfSBarry Smith + dm - The `DM` 8624a4e35b19SJacob Faibussowitsch . time - The time 8625b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8626b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8627574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8628b698f381SToby Isaac - n - The vector to project along 8629b698f381SToby Isaac 8630b698f381SToby Isaac Output Parameter: 8631b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8632b698f381SToby Isaac 8633b698f381SToby Isaac Level: developer 8634b698f381SToby Isaac 8635bb7acecfSBarry Smith Developer Notes: 8636bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8637bb7acecfSBarry Smith 8638bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8639bb7acecfSBarry Smith 86401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8641b698f381SToby Isaac @*/ 8642d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8643d71ae5a4SJacob Faibussowitsch { 8644b698f381SToby Isaac PetscFunctionBegin; 8645b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8646b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8647fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 86483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8649b698f381SToby Isaac } 8650b698f381SToby Isaac 86512a16baeaSToby Isaac /*@C 86522a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 86532a16baeaSToby Isaac 865420f4b53cSBarry Smith Collective 8655d083f849SBarry Smith 86562a16baeaSToby Isaac Input Parameters: 8657bb7acecfSBarry Smith + dm - The `DM` 86582a16baeaSToby Isaac . time - The time 86592a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 86602a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8661574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86622a16baeaSToby Isaac 86632a16baeaSToby Isaac Output Parameter: 86642a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 86652a16baeaSToby Isaac 86662a16baeaSToby Isaac Level: developer 86672a16baeaSToby Isaac 8668bb7acecfSBarry Smith Developer Notes: 8669bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8670bb7acecfSBarry Smith 8671bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8672bb7acecfSBarry Smith 867342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 86742a16baeaSToby Isaac @*/ 8675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8676d71ae5a4SJacob Faibussowitsch { 86772a16baeaSToby Isaac PetscFunctionBegin; 86782a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86792a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8680fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 86813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86822a16baeaSToby Isaac } 86832a16baeaSToby Isaac 8684df0b854cSToby Isaac /*@C 8685bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8686502a2867SDave May 8687502a2867SDave May Not Collective 8688502a2867SDave May 8689502a2867SDave May Input Parameter: 8690bb7acecfSBarry Smith . dm - The `DM` 8691502a2867SDave May 86920a19bb7dSprj- Output Parameters: 86930a19bb7dSprj- + nranks - the number of neighbours 86940a19bb7dSprj- - ranks - the neighbors ranks 8695502a2867SDave May 86969bdbcad8SBarry Smith Level: beginner 86979bdbcad8SBarry Smith 8698bb7acecfSBarry Smith Note: 8699bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8700502a2867SDave May 87011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8702502a2867SDave May @*/ 8703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8704d71ae5a4SJacob Faibussowitsch { 8705502a2867SDave May PetscFunctionBegin; 8706502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8707fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 87083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8709502a2867SDave May } 8710502a2867SDave May 8711531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8712531c7667SBarry Smith 8713531c7667SBarry Smith /* 8714531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 87152b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8716531c7667SBarry Smith */ 871766976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8718d71ae5a4SJacob Faibussowitsch { 8719531c7667SBarry Smith PetscFunctionBegin; 8720531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8721531c7667SBarry Smith Vec x1local; 8722531c7667SBarry Smith DM dm; 87239566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87247a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 87259566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 87269566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 87279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8728531c7667SBarry Smith x1 = x1local; 8729531c7667SBarry Smith } 87309566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8731531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8732531c7667SBarry Smith DM dm; 87339566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87349566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8735531c7667SBarry Smith } 87363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8737531c7667SBarry Smith } 8738531c7667SBarry Smith 8739531c7667SBarry Smith /*@ 8740bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8741531c7667SBarry Smith 8742a4e35b19SJacob Faibussowitsch Input Parameters: 8743a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8744a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8745531c7667SBarry Smith 87469bdbcad8SBarry Smith Level: advanced 87479bdbcad8SBarry Smith 874873ff1848SBarry Smith Developer Note: 874973ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8750531c7667SBarry Smith 87511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8752531c7667SBarry Smith @*/ 8753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8754d71ae5a4SJacob Faibussowitsch { 8755531c7667SBarry Smith PetscFunctionBegin; 8756531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 87573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8758531c7667SBarry Smith } 87598320bc6fSPatrick Sanan 87608320bc6fSPatrick Sanan /*@ 8761bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 87628320bc6fSPatrick Sanan 87638320bc6fSPatrick Sanan Collective 87648320bc6fSPatrick Sanan 87658320bc6fSPatrick Sanan Input Parameters: 8766bb7acecfSBarry Smith + dm1 - the first `DM` 8767bb7acecfSBarry Smith - dm2 - the second `DM` 87688320bc6fSPatrick Sanan 87698320bc6fSPatrick Sanan Output Parameters: 8770bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8771bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 87728320bc6fSPatrick Sanan 877320f4b53cSBarry Smith Level: advanced 877420f4b53cSBarry Smith 87758320bc6fSPatrick Sanan Notes: 8776bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 87773d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 87788320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8779bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 87803d862458SPatrick Sanan decomposition, but hold different data. 87818320bc6fSPatrick Sanan 87828320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8783bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87848320bc6fSPatrick Sanan 8785bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87868320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87878320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8788bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87898320bc6fSPatrick Sanan 8790bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8791bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87928320bc6fSPatrick Sanan .vb 87938320bc6fSPatrick Sanan ... 87949566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87958320bc6fSPatrick Sanan if (set && compatible) { 87969566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87979566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87989566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87998320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 88008320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 88018320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 88028320bc6fSPatrick Sanan } 88038320bc6fSPatrick Sanan } 88049566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 88059566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 88068320bc6fSPatrick Sanan } else { 88078320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 88088320bc6fSPatrick Sanan } 88098320bc6fSPatrick Sanan ... 88108320bc6fSPatrick Sanan .ve 88118320bc6fSPatrick Sanan 8812bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 88138320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 88148320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 88158320bc6fSPatrick Sanan always check the "set" output parameter. 88168320bc6fSPatrick Sanan 8817bb7acecfSBarry Smith A `DM` is always compatible with itself. 88188320bc6fSPatrick Sanan 8819bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 88208320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 88218320bc6fSPatrick Sanan incompatible. 88228320bc6fSPatrick Sanan 88238320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8824bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 88258320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 88268320bc6fSPatrick Sanan 882773ff1848SBarry Smith Developer Note: 8828bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 88293d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8830a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8831bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 88328320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 88333d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8834bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 88358320bc6fSPatrick Sanan 88361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 88378320bc6fSPatrick Sanan @*/ 8838d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8839d71ae5a4SJacob Faibussowitsch { 88408320bc6fSPatrick Sanan PetscMPIInt compareResult; 88418320bc6fSPatrick Sanan DMType type, type2; 88428320bc6fSPatrick Sanan PetscBool sameType; 88438320bc6fSPatrick Sanan 88448320bc6fSPatrick Sanan PetscFunctionBegin; 8845a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 88468320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 88478320bc6fSPatrick Sanan 88488320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8849a5bc1bf3SBarry Smith if (dm1 == dm2) { 88508320bc6fSPatrick Sanan *set = PETSC_TRUE; 88518320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 88523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88538320bc6fSPatrick Sanan } 88548320bc6fSPatrick Sanan 88558320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 88568320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 88578320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 88588320bc6fSPatrick Sanan determined by the implementation-specific logic */ 88599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 88608320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 88618320bc6fSPatrick Sanan *set = PETSC_TRUE; 88628320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 88633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88648320bc6fSPatrick Sanan } 88658320bc6fSPatrick Sanan 88668320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8867a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8868dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 88693ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 88708320bc6fSPatrick Sanan } 88718320bc6fSPatrick Sanan 8872a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 88738320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 88749566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 88759566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 88769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 88778320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8878dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 88798320bc6fSPatrick Sanan } else { 88808320bc6fSPatrick Sanan *set = PETSC_FALSE; 88818320bc6fSPatrick Sanan } 88823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88838320bc6fSPatrick Sanan } 8884c0f0dcc3SMatthew G. Knepley 8885c0f0dcc3SMatthew G. Knepley /*@C 8886bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8887c0f0dcc3SMatthew G. Knepley 888820f4b53cSBarry Smith Logically Collective 8889c0f0dcc3SMatthew G. Knepley 8890c0f0dcc3SMatthew G. Knepley Input Parameters: 889160225df5SJacob Faibussowitsch + dm - the `DM` 8892c0f0dcc3SMatthew G. Knepley . f - the monitor function 889320f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 889449abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8895c0f0dcc3SMatthew G. Knepley 889620f4b53cSBarry Smith Options Database Key: 889760225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8898c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8899c0f0dcc3SMatthew G. Knepley 89009bdbcad8SBarry Smith Level: intermediate 89019bdbcad8SBarry Smith 8902bb7acecfSBarry Smith Note: 8903c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8904bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8905c0f0dcc3SMatthew G. Knepley order in which they were set. 8906c0f0dcc3SMatthew G. Knepley 890773ff1848SBarry Smith Fortran Note: 8908bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8909bb7acecfSBarry Smith 891073ff1848SBarry Smith Developer Note: 8911bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8912c0f0dcc3SMatthew G. Knepley 891349abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8914c0f0dcc3SMatthew G. Knepley @*/ 891549abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8916d71ae5a4SJacob Faibussowitsch { 8917c0f0dcc3SMatthew G. Knepley PetscInt m; 8918c0f0dcc3SMatthew G. Knepley 8919c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8920c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8921c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8922c0f0dcc3SMatthew G. Knepley PetscBool identical; 8923c0f0dcc3SMatthew G. Knepley 89249566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 89253ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8926c0f0dcc3SMatthew G. Knepley } 89277a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8928c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8929c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8930835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 89313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8932c0f0dcc3SMatthew G. Knepley } 8933c0f0dcc3SMatthew G. Knepley 8934c0f0dcc3SMatthew G. Knepley /*@ 8935bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8936c0f0dcc3SMatthew G. Knepley 893720f4b53cSBarry Smith Logically Collective 8938c0f0dcc3SMatthew G. Knepley 8939c0f0dcc3SMatthew G. Knepley Input Parameter: 8940c0f0dcc3SMatthew G. Knepley . dm - the DM 8941c0f0dcc3SMatthew G. Knepley 8942c0f0dcc3SMatthew G. Knepley Options Database Key: 8943c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8944bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8945c0f0dcc3SMatthew G. Knepley set via the options database 8946c0f0dcc3SMatthew G. Knepley 89479bdbcad8SBarry Smith Level: intermediate 89489bdbcad8SBarry Smith 8949bb7acecfSBarry Smith Note: 8950bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8951c0f0dcc3SMatthew G. Knepley 89521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8953c0f0dcc3SMatthew G. Knepley @*/ 8954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8955d71ae5a4SJacob Faibussowitsch { 8956c0f0dcc3SMatthew G. Knepley PetscInt m; 8957c0f0dcc3SMatthew G. Knepley 8958c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8959c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8960c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 89619566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8962c0f0dcc3SMatthew G. Knepley } 8963c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 89643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8965c0f0dcc3SMatthew G. Knepley } 8966c0f0dcc3SMatthew G. Knepley 8967c0f0dcc3SMatthew G. Knepley /*@C 8968c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8969c0f0dcc3SMatthew G. Knepley 897020f4b53cSBarry Smith Collective 8971c0f0dcc3SMatthew G. Knepley 8972c0f0dcc3SMatthew G. Knepley Input Parameters: 8973bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8974c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8975c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8976c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 897749abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 8978bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8979c0f0dcc3SMatthew G. Knepley 8980c0f0dcc3SMatthew G. Knepley Output Parameter: 8981c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8982c0f0dcc3SMatthew G. Knepley 8983c0f0dcc3SMatthew G. Knepley Level: developer 8984c0f0dcc3SMatthew G. Knepley 8985648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8986db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 898760225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8988db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8989c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8990db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8991bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8992c0f0dcc3SMatthew G. Knepley @*/ 8993d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8994d71ae5a4SJacob Faibussowitsch { 8995c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8996c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8997c0f0dcc3SMatthew G. Knepley 8998c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8999c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9000648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 9001c0f0dcc3SMatthew G. Knepley if (*flg) { 9002c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 9003c0f0dcc3SMatthew G. Knepley 90049566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 9005648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 90069566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 9007835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 9008c0f0dcc3SMatthew G. Knepley } 90093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9010c0f0dcc3SMatthew G. Knepley } 9011c0f0dcc3SMatthew G. Knepley 9012c0f0dcc3SMatthew G. Knepley /*@ 9013c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 9014c0f0dcc3SMatthew G. Knepley 901520f4b53cSBarry Smith Collective 9016c0f0dcc3SMatthew G. Knepley 90172fe279fdSBarry Smith Input Parameter: 9018bb7acecfSBarry Smith . dm - The `DM` 9019c0f0dcc3SMatthew G. Knepley 9020c0f0dcc3SMatthew G. Knepley Level: developer 9021c0f0dcc3SMatthew G. Knepley 902273ff1848SBarry Smith Developer Note: 9023a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 9024a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 9025a4e35b19SJacob Faibussowitsch concept of discretization. 9026bb7acecfSBarry Smith 90271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9028c0f0dcc3SMatthew G. Knepley @*/ 9029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9030d71ae5a4SJacob Faibussowitsch { 9031c0f0dcc3SMatthew G. Knepley PetscInt m; 9032c0f0dcc3SMatthew G. Knepley 9033c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 90343ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9035c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 903648a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 90373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9038c0f0dcc3SMatthew G. Knepley } 90392e4af2aeSMatthew G. Knepley 90402e4af2aeSMatthew G. Knepley /*@ 9041bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 90422e4af2aeSMatthew G. Knepley 904320f4b53cSBarry Smith Collective 90442e4af2aeSMatthew G. Knepley 90452e4af2aeSMatthew G. Knepley Input Parameters: 9046bb7acecfSBarry Smith + dm - The `DM` 90476b867d5aSJose E. Roman - sol - The solution vector 90482e4af2aeSMatthew G. Knepley 90496b867d5aSJose E. Roman Input/Output Parameter: 905020f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 90516b867d5aSJose E. Roman contains the error in each field 90526b867d5aSJose E. Roman 90536b867d5aSJose E. Roman Output Parameter: 905420f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 905520f4b53cSBarry Smith 905620f4b53cSBarry Smith Level: developer 90572e4af2aeSMatthew G. Knepley 9058bb7acecfSBarry Smith Note: 9059bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 90602e4af2aeSMatthew G. Knepley 90611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 90622e4af2aeSMatthew G. Knepley @*/ 9063d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9064d71ae5a4SJacob Faibussowitsch { 90652e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 90662e4af2aeSMatthew G. Knepley void **ctxs; 90672e4af2aeSMatthew G. Knepley PetscReal time; 90682e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 90692e4af2aeSMatthew G. Knepley 90702e4af2aeSMatthew G. Knepley PetscFunctionBegin; 90719566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 90739566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 90742e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 90752e4af2aeSMatthew G. Knepley PetscDS ds; 90762e4af2aeSMatthew G. Knepley DMLabel label; 90772e4af2aeSMatthew G. Knepley IS fieldIS; 90782e4af2aeSMatthew G. Knepley const PetscInt *fields; 90792e4af2aeSMatthew G. Knepley PetscInt dsNf; 90802e4af2aeSMatthew G. Knepley 908107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 90829566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90839566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90842e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90852e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90869566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90872e4af2aeSMatthew G. Knepley } 90889566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90892e4af2aeSMatthew G. Knepley } 9090ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90919566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90929566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90932e4af2aeSMatthew G. Knepley if (errorVec) { 90942e4af2aeSMatthew G. Knepley DM edm; 90952e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90962e4af2aeSMatthew G. Knepley PetscBool simplex; 90972e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90982e4af2aeSMatthew G. Knepley 90999566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 91009566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 91019566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 91029566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 91032e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 91049566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91052e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 91062e4af2aeSMatthew G. Knepley PetscFE fe, efe; 91072e4af2aeSMatthew G. Knepley PetscQuadrature q; 91082e4af2aeSMatthew G. Knepley const char *name; 91092e4af2aeSMatthew G. Knepley 91109566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 91119566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 91129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 91139566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 91149566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 91159566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 91169566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 91179566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 91182e4af2aeSMatthew G. Knepley } 91199566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 91202e4af2aeSMatthew G. Knepley 91219566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 91229566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 91239566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 91249566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 91252e4af2aeSMatthew G. Knepley } 91269566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 91273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91282e4af2aeSMatthew G. Knepley } 91299a2a23afSMatthew G. Knepley 91309a2a23afSMatthew G. Knepley /*@ 9131bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 91329a2a23afSMatthew G. Knepley 913320f4b53cSBarry Smith Not Collective 91349a2a23afSMatthew G. Knepley 91359a2a23afSMatthew G. Knepley Input Parameter: 9136bb7acecfSBarry Smith . dm - The `DM` 91379a2a23afSMatthew G. Knepley 91389a2a23afSMatthew G. Knepley Output Parameter: 9139a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 91409a2a23afSMatthew G. Knepley 91419a2a23afSMatthew G. Knepley Level: advanced 91429a2a23afSMatthew G. Knepley 9143e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 91449a2a23afSMatthew G. Knepley @*/ 9145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9146d71ae5a4SJacob Faibussowitsch { 91479a2a23afSMatthew G. Knepley PetscFunctionBegin; 91489a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91499566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 91503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91519a2a23afSMatthew G. Knepley } 91529a2a23afSMatthew G. Knepley 91539a2a23afSMatthew G. Knepley /*@ 9154ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 91559a2a23afSMatthew G. Knepley 915620f4b53cSBarry Smith Not Collective 91579a2a23afSMatthew G. Knepley 91589a2a23afSMatthew G. Knepley Input Parameters: 9159bb7acecfSBarry Smith + dm - The `DM` 9160bb7acecfSBarry Smith . label - The `DMLabel` 9161ac17215fSMatthew G. Knepley . value - The label value indicating the region 9162ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 91639a2a23afSMatthew G. Knepley 91649a2a23afSMatthew G. Knepley Output Parameter: 9165bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 91669a2a23afSMatthew G. Knepley 91679bdbcad8SBarry Smith Level: advanced 91689bdbcad8SBarry Smith 9169bb7acecfSBarry Smith Note: 9170bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 917104c51a94SMatthew G. Knepley 9172e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 91739a2a23afSMatthew G. Knepley @*/ 9174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9175d71ae5a4SJacob Faibussowitsch { 9176ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 917704c51a94SMatthew G. Knepley PetscBool has; 91789a2a23afSMatthew G. Knepley 91799a2a23afSMatthew G. Knepley PetscFunctionBegin; 91809a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91819a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91829a2a23afSMatthew G. Knepley key.label = label; 91839a2a23afSMatthew G. Knepley key.value = value; 9184ac17215fSMatthew G. Knepley key.part = part; 91859566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91869566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91879566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91899a2a23afSMatthew G. Knepley } 91909a2a23afSMatthew G. Knepley 91919a2a23afSMatthew G. Knepley /*@ 9192bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91939a2a23afSMatthew G. Knepley 919420f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91959a2a23afSMatthew G. Knepley 91969a2a23afSMatthew G. Knepley Input Parameters: 9197bb7acecfSBarry Smith + dm - The `DM` 9198bb7acecfSBarry Smith . label - The `DMLabel` 91999a2a23afSMatthew G. Knepley . value - The label value indicating the region 9200ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9201bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 92029a2a23afSMatthew G. Knepley 92039a2a23afSMatthew G. Knepley Level: advanced 92049a2a23afSMatthew G. Knepley 9205e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 92069a2a23afSMatthew G. Knepley @*/ 9207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9208d71ae5a4SJacob Faibussowitsch { 92099a2a23afSMatthew G. Knepley Vec old; 92109a2a23afSMatthew G. Knepley PetscHashAuxKey key; 92119a2a23afSMatthew G. Knepley 92129a2a23afSMatthew G. Knepley PetscFunctionBegin; 92139a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92149a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92159a2a23afSMatthew G. Knepley key.label = label; 92169a2a23afSMatthew G. Knepley key.value = value; 9217ac17215fSMatthew G. Knepley key.part = part; 92189566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 92199566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 92209566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 92219566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9222d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 92233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92249a2a23afSMatthew G. Knepley } 92259a2a23afSMatthew G. Knepley 9226cc4c1da9SBarry Smith /*@ 9227bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 92289a2a23afSMatthew G. Knepley 922920f4b53cSBarry Smith Not Collective 92309a2a23afSMatthew G. Knepley 92319a2a23afSMatthew G. Knepley Input Parameter: 9232bb7acecfSBarry Smith . dm - The `DM` 92339a2a23afSMatthew G. Knepley 92349a2a23afSMatthew G. Knepley Output Parameters: 9235bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9236bb7acecfSBarry Smith . values - The label values for each `Vec` 9237bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 92389a2a23afSMatthew G. Knepley 92399bdbcad8SBarry Smith Level: advanced 92409bdbcad8SBarry Smith 9241bb7acecfSBarry Smith Note: 9242bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 92439a2a23afSMatthew G. Knepley 9244e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 92459a2a23afSMatthew G. Knepley @*/ 9246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9247d71ae5a4SJacob Faibussowitsch { 92489a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 92499a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 92509a2a23afSMatthew G. Knepley 92519a2a23afSMatthew G. Knepley PetscFunctionBegin; 92529a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92534f572ea9SToby Isaac PetscAssertPointer(labels, 2); 92544f572ea9SToby Isaac PetscAssertPointer(values, 3); 92554f572ea9SToby Isaac PetscAssertPointer(parts, 4); 92569566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 92579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 92589566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 92599371c9d4SSatish Balay for (i = 0; i < n; ++i) { 92609371c9d4SSatish Balay labels[i] = keys[i].label; 92619371c9d4SSatish Balay values[i] = keys[i].value; 92629371c9d4SSatish Balay parts[i] = keys[i].part; 92639371c9d4SSatish Balay } 92649566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 92653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92669a2a23afSMatthew G. Knepley } 92679a2a23afSMatthew G. Knepley 92689a2a23afSMatthew G. Knepley /*@ 9269bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 92709a2a23afSMatthew G. Knepley 927120f4b53cSBarry Smith Not Collective 92729a2a23afSMatthew G. Knepley 92739a2a23afSMatthew G. Knepley Input Parameter: 9274bb7acecfSBarry Smith . dm - The `DM` 92759a2a23afSMatthew G. Knepley 92769a2a23afSMatthew G. Knepley Output Parameter: 9277bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 92789a2a23afSMatthew G. Knepley 92799a2a23afSMatthew G. Knepley Level: advanced 92809a2a23afSMatthew G. Knepley 9281bb7acecfSBarry Smith Note: 9282bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9283bb7acecfSBarry Smith 9284e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92859a2a23afSMatthew G. Knepley @*/ 9286d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9287d71ae5a4SJacob Faibussowitsch { 92889a2a23afSMatthew G. Knepley PetscFunctionBegin; 92899a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9290d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9291d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9292e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9293e4d5475eSStefano Zampini 9294e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92959566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9296d705d0eaSStefano Zampini { 9297d705d0eaSStefano Zampini Vec *auxData; 9298d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9299d705d0eaSStefano Zampini 9300d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9301d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9302d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9303d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9304d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9305e4d5475eSStefano Zampini } 9306e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9307e4d5475eSStefano Zampini } 9308e4d5475eSStefano Zampini 9309e4d5475eSStefano Zampini /*@ 9310e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9311e4d5475eSStefano Zampini 9312e4d5475eSStefano Zampini Not Collective 9313e4d5475eSStefano Zampini 9314e4d5475eSStefano Zampini Input Parameter: 9315e4d5475eSStefano Zampini . dm - The `DM` 9316e4d5475eSStefano Zampini 9317e4d5475eSStefano Zampini Level: advanced 9318e4d5475eSStefano Zampini 9319e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9320e4d5475eSStefano Zampini @*/ 9321e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9322e4d5475eSStefano Zampini { 9323e4d5475eSStefano Zampini Vec *auxData; 9324e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9325e4d5475eSStefano Zampini 9326e4d5475eSStefano Zampini PetscFunctionBegin; 9327e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9328d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9329e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9330d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9331d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9332e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9333e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 93343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93359a2a23afSMatthew G. Knepley } 9336b5a892a1SMatthew G. Knepley 9337cc4c1da9SBarry Smith /*@ 9338bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9339b5a892a1SMatthew G. Knepley 934020f4b53cSBarry Smith Not Collective 9341b5a892a1SMatthew G. Knepley 9342b5a892a1SMatthew G. Knepley Input Parameters: 9343bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9344b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9345b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9346b5a892a1SMatthew G. Knepley 9347b5a892a1SMatthew G. Knepley Output Parameters: 9348bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9349b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9350b5a892a1SMatthew G. Knepley 9351b5a892a1SMatthew G. Knepley Level: advanced 9352b5a892a1SMatthew G. Knepley 9353bb7acecfSBarry Smith Note: 9354bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9355bb7acecfSBarry Smith 935685036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9357bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9358bb7acecfSBarry Smith 9359bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9360bb7acecfSBarry Smith 93611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9362b5a892a1SMatthew G. Knepley @*/ 9363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9364d71ae5a4SJacob Faibussowitsch { 9365b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 936685036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9367b5a892a1SMatthew G. Knepley PetscInt o, c; 9368b5a892a1SMatthew G. Knepley 9369b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93709371c9d4SSatish Balay if (!nO) { 93719371c9d4SSatish Balay *ornt = 0; 93729371c9d4SSatish Balay *found = PETSC_TRUE; 93733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93749371c9d4SSatish Balay } 9375b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 937685036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9377b5a892a1SMatthew G. Knepley 93789371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93799371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 93809371c9d4SSatish Balay if (c == cS) { 93819371c9d4SSatish Balay *ornt = o; 93829371c9d4SSatish Balay break; 93839371c9d4SSatish Balay } 9384b5a892a1SMatthew G. Knepley } 9385b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9387b5a892a1SMatthew G. Knepley } 9388b5a892a1SMatthew G. Knepley 9389cc4c1da9SBarry Smith /*@ 9390bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9391b5a892a1SMatthew G. Knepley 939220f4b53cSBarry Smith Not Collective 9393b5a892a1SMatthew G. Knepley 9394b5a892a1SMatthew G. Knepley Input Parameters: 9395bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9396b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9397b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9398b5a892a1SMatthew G. Knepley 93992fe279fdSBarry Smith Output Parameter: 9400bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9401b5a892a1SMatthew G. Knepley 9402b5a892a1SMatthew G. Knepley Level: advanced 9403b5a892a1SMatthew G. Knepley 9404bb7acecfSBarry Smith Note: 9405bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9406bb7acecfSBarry Smith 940773ff1848SBarry Smith Developer Note: 9408bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9409bb7acecfSBarry Smith 94101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9411b5a892a1SMatthew G. Knepley @*/ 9412d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9413d71ae5a4SJacob Faibussowitsch { 9414b5a892a1SMatthew G. Knepley PetscBool found; 9415b5a892a1SMatthew G. Knepley 9416b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94179566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 94187a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9420b5a892a1SMatthew G. Knepley } 9421b5a892a1SMatthew G. Knepley 9422cc4c1da9SBarry Smith /*@ 9423bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9424b5a892a1SMatthew G. Knepley 942520f4b53cSBarry Smith Not Collective 9426b5a892a1SMatthew G. Knepley 9427b5a892a1SMatthew G. Knepley Input Parameters: 9428bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9429b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9430b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9431b5a892a1SMatthew G. Knepley 9432b5a892a1SMatthew G. Knepley Output Parameters: 9433bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9434b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9435b5a892a1SMatthew G. Knepley 9436b5a892a1SMatthew G. Knepley Level: advanced 9437b5a892a1SMatthew G. Knepley 943873ff1848SBarry Smith Notes: 9439bb7acecfSBarry Smith An arrangement is a vertex order 9440bb7acecfSBarry Smith 944185036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9442bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9443bb7acecfSBarry Smith 9444bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9445bb7acecfSBarry Smith 944685036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9447b5a892a1SMatthew G. Knepley @*/ 9448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9449d71ae5a4SJacob Faibussowitsch { 9450b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 945185036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9452b5a892a1SMatthew G. Knepley PetscInt o, c; 9453b5a892a1SMatthew G. Knepley 9454b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94559371c9d4SSatish Balay if (!nO) { 94569371c9d4SSatish Balay *ornt = 0; 94579371c9d4SSatish Balay *found = PETSC_TRUE; 94583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94599371c9d4SSatish Balay } 9460b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 946185036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9462b5a892a1SMatthew G. Knepley 94639371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94649371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 94659371c9d4SSatish Balay if (c == cS) { 94669371c9d4SSatish Balay *ornt = o; 94679371c9d4SSatish Balay break; 94689371c9d4SSatish Balay } 9469b5a892a1SMatthew G. Knepley } 9470b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9472b5a892a1SMatthew G. Knepley } 9473b5a892a1SMatthew G. Knepley 9474cc4c1da9SBarry Smith /*@ 9475bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9476b5a892a1SMatthew G. Knepley 947720f4b53cSBarry Smith Not Collective 9478b5a892a1SMatthew G. Knepley 9479b5a892a1SMatthew G. Knepley Input Parameters: 9480bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9481b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9482b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9483b5a892a1SMatthew G. Knepley 94842fe279fdSBarry Smith Output Parameter: 9485bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9486b5a892a1SMatthew G. Knepley 9487b5a892a1SMatthew G. Knepley Level: advanced 9488b5a892a1SMatthew G. Knepley 9489bb7acecfSBarry Smith Note: 9490bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9491bb7acecfSBarry Smith 949273ff1848SBarry Smith Developer Note: 9493bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9494bb7acecfSBarry Smith 94951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9496b5a892a1SMatthew G. Knepley @*/ 9497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9498d71ae5a4SJacob Faibussowitsch { 9499b5a892a1SMatthew G. Knepley PetscBool found; 9500b5a892a1SMatthew G. Knepley 9501b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95029566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 95037a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 95043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9505b5a892a1SMatthew G. Knepley } 9506012bc364SMatthew G. Knepley 9507cc4c1da9SBarry Smith /*@ 9508012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9509012bc364SMatthew G. Knepley 951020f4b53cSBarry Smith Not Collective 9511012bc364SMatthew G. Knepley 9512012bc364SMatthew G. Knepley Input Parameters: 9513bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9514012bc364SMatthew G. Knepley - point - Coordinates of the point 9515012bc364SMatthew G. Knepley 95162fe279fdSBarry Smith Output Parameter: 9517012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9518012bc364SMatthew G. Knepley 9519012bc364SMatthew G. Knepley Level: advanced 9520012bc364SMatthew G. Knepley 95211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9522012bc364SMatthew G. Knepley @*/ 9523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9524d71ae5a4SJacob Faibussowitsch { 9525012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9526012bc364SMatthew G. Knepley PetscInt d; 9527012bc364SMatthew G. Knepley 9528012bc364SMatthew G. Knepley PetscFunctionBegin; 9529012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9530012bc364SMatthew G. Knepley switch (ct) { 9531012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9532012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9533012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 95349371c9d4SSatish Balay if (point[d] < -1.0) { 95359371c9d4SSatish Balay *inside = PETSC_FALSE; 95369371c9d4SSatish Balay break; 95379371c9d4SSatish Balay } 9538012bc364SMatthew G. Knepley sum += point[d]; 9539012bc364SMatthew G. Knepley } 95409371c9d4SSatish Balay if (sum > PETSC_SMALL) { 95419371c9d4SSatish Balay *inside = PETSC_FALSE; 95429371c9d4SSatish Balay break; 95439371c9d4SSatish Balay } 9544012bc364SMatthew G. Knepley break; 9545012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9546012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9547012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 95489371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 95499371c9d4SSatish Balay *inside = PETSC_FALSE; 9550012bc364SMatthew G. Knepley break; 95519371c9d4SSatish Balay } 95529371c9d4SSatish Balay break; 9553d71ae5a4SJacob Faibussowitsch default: 9554d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9555012bc364SMatthew G. Knepley } 95563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9557012bc364SMatthew G. Knepley } 9558adc21957SMatthew G. Knepley 9559adc21957SMatthew G. Knepley /*@ 9560adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9561adc21957SMatthew G. Knepley 9562adc21957SMatthew G. Knepley Logically collective 9563adc21957SMatthew G. Knepley 9564adc21957SMatthew G. Knepley Input Parameters: 9565adc21957SMatthew G. Knepley + dm - The DM 9566adc21957SMatthew G. Knepley - reorder - Flag for reordering 9567adc21957SMatthew G. Knepley 9568adc21957SMatthew G. Knepley Level: intermediate 9569adc21957SMatthew G. Knepley 9570adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9571adc21957SMatthew G. Knepley @*/ 9572adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9573adc21957SMatthew G. Knepley { 9574adc21957SMatthew G. Knepley PetscFunctionBegin; 9575adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9576adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9577adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9578adc21957SMatthew G. Knepley } 9579adc21957SMatthew G. Knepley 9580adc21957SMatthew G. Knepley /*@ 9581adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9582adc21957SMatthew G. Knepley 9583adc21957SMatthew G. Knepley Not collective 9584adc21957SMatthew G. Knepley 9585adc21957SMatthew G. Knepley Input Parameter: 9586adc21957SMatthew G. Knepley . dm - The DM 9587adc21957SMatthew G. Knepley 9588adc21957SMatthew G. Knepley Output Parameter: 9589adc21957SMatthew G. Knepley . reorder - Flag for reordering 9590adc21957SMatthew G. Knepley 9591adc21957SMatthew G. Knepley Level: intermediate 9592adc21957SMatthew G. Knepley 9593adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9594adc21957SMatthew G. Knepley @*/ 9595adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9596adc21957SMatthew G. Knepley { 9597adc21957SMatthew G. Knepley PetscFunctionBegin; 9598adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9599adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9600adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9601adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9602adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9603adc21957SMatthew G. Knepley } 9604adc21957SMatthew G. Knepley 9605cc4c1da9SBarry Smith /*@ 9606adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9607adc21957SMatthew G. Knepley 9608adc21957SMatthew G. Knepley Logically collective 9609adc21957SMatthew G. Knepley 9610adc21957SMatthew G. Knepley Input Parameters: 9611adc21957SMatthew G. Knepley + dm - The DM 9612adc21957SMatthew G. Knepley - reorder - The reordering method 9613adc21957SMatthew G. Knepley 9614adc21957SMatthew G. Knepley Level: intermediate 9615adc21957SMatthew G. Knepley 9616adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9617adc21957SMatthew G. Knepley @*/ 9618adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9619adc21957SMatthew G. Knepley { 9620adc21957SMatthew G. Knepley PetscFunctionBegin; 9621adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9622adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9623adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9624adc21957SMatthew G. Knepley } 9625adc21957SMatthew G. Knepley 9626cc4c1da9SBarry Smith /*@ 9627adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9628adc21957SMatthew G. Knepley 9629adc21957SMatthew G. Knepley Not collective 9630adc21957SMatthew G. Knepley 9631adc21957SMatthew G. Knepley Input Parameter: 9632adc21957SMatthew G. Knepley . dm - The DM 9633adc21957SMatthew G. Knepley 9634adc21957SMatthew G. Knepley Output Parameter: 9635adc21957SMatthew G. Knepley . reorder - The reordering method 9636adc21957SMatthew G. Knepley 9637adc21957SMatthew G. Knepley Level: intermediate 9638adc21957SMatthew G. Knepley 9639adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9640adc21957SMatthew G. Knepley @*/ 9641adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9642adc21957SMatthew G. Knepley { 9643adc21957SMatthew G. Knepley PetscFunctionBegin; 9644adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9645adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9646adc21957SMatthew G. Knepley *reorder = NULL; 9647adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9648adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9649adc21957SMatthew G. Knepley } 9650