xref: /petsc/src/dm/interface/dm.c (revision 42d0c57a22d0dc643733cc7f5031e3beeda69aa5)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
17*42d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction;
1867a56275SMatthew G Knepley 
19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
20d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
210e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
22476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
23476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
24476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2660c22052SBarry Smith 
27a4121054SBarry Smith /*@
28bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
29bb7acecfSBarry Smith   algebraic solvers, time integrators, and optimization algorithms.
30a4121054SBarry Smith 
31d083f849SBarry Smith   Collective
32a4121054SBarry Smith 
33a4121054SBarry Smith   Input Parameter:
34bb7acecfSBarry Smith . comm - The communicator for the `DM` object
35a4121054SBarry Smith 
36a4121054SBarry Smith   Output Parameter:
37bb7acecfSBarry Smith . dm - The `DM` object
38a4121054SBarry Smith 
39a4121054SBarry Smith   Level: beginner
40a4121054SBarry Smith 
41bb7acecfSBarry Smith   Notes:
42bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
43bb7acecfSBarry Smith 
44bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
45bb7acecfSBarry Smith   error when you try to use the dm.
46bb7acecfSBarry Smith 
471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
48a4121054SBarry Smith @*/
49d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
50d71ae5a4SJacob Faibussowitsch {
51a4121054SBarry Smith   DM      v;
52e5e52638SMatthew G. Knepley   PetscDS ds;
53a4121054SBarry Smith 
54a4121054SBarry Smith   PetscFunctionBegin;
554f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
56377f809aSBarry Smith 
579566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
589566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
5962e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6049be4549SMatthew G. Knepley   v->setupcalled                          = PETSC_FALSE;
6149be4549SMatthew G. Knepley   v->setfromoptionscalled                 = PETSC_FALSE;
620298fd71SBarry Smith   v->ltogmap                              = NULL;
63a4ea9b21SRichard Tran Mills   v->bind_below                           = 0;
641411c6eeSJed Brown   v->bs                                   = 1;
65171400e9SBarry Smith   v->coloringtype                         = IS_COLORING_GLOBAL;
669566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
679566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
68c58f1c22SToby Isaac   v->labels                    = NULL;
6934aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7034aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
71c58f1c22SToby Isaac   v->depthLabel                = NULL;
72ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
731bb6d2a8SBarry Smith   v->localSection              = NULL;
741bb6d2a8SBarry Smith   v->globalSection             = NULL;
753b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
763b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
7779769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
786858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
796858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
806858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8196173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
82435a35e8SMatthew G Knepley   {
83435a35e8SMatthew G Knepley     PetscInt i;
84435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
850298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
86f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
87435a35e8SMatthew G Knepley     }
88435a35e8SMatthew G Knepley   }
899566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9007218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
919566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
929566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9314f150ffSMatthew G. Knepley   v->dmBC              = NULL;
94a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
95f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
96cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
979566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
989566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
994a7a4c06SLawrence Mitchell 
1001411c6eeSJed Brown   *dm = v;
1013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
102a4121054SBarry Smith }
103a4121054SBarry Smith 
10438221697SMatthew G. Knepley /*@
105bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
10638221697SMatthew G. Knepley 
107d083f849SBarry Smith   Collective
10838221697SMatthew G. Knepley 
10938221697SMatthew G. Knepley   Input Parameter:
110bb7acecfSBarry Smith . dm - The original `DM` object
11138221697SMatthew G. Knepley 
11238221697SMatthew G. Knepley   Output Parameter:
113bb7acecfSBarry Smith . newdm - The new `DM` object
11438221697SMatthew G. Knepley 
11538221697SMatthew G. Knepley   Level: beginner
11638221697SMatthew G. Knepley 
1171cb8cacdSPatrick Sanan   Notes:
118bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
119bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
120bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1211bb6d2a8SBarry Smith 
122bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12389706ed2SPatrick Sanan 
124bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
125bb7acecfSBarry Smith 
12660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
12738221697SMatthew G. Knepley @*/
128d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
129d71ae5a4SJacob Faibussowitsch {
13038221697SMatthew G. Knepley   PetscSF              sf;
13138221697SMatthew G. Knepley   Vec                  coords;
13238221697SMatthew G. Knepley   void                *ctx;
133ec196627SMatthew G. Knepley   MatOrderingType      otype;
134ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1356858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
13638221697SMatthew G. Knepley 
13738221697SMatthew G. Knepley   PetscFunctionBegin;
13838221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1394f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1409566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1419566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
142ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
143ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
144c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
145fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1469566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1479566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1499566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1509566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1519566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
152dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1533f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1549566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1559566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1569566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1579566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
158ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
159ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
160ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
161ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1626858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1636858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
164be4c1c3eSMatthew G. Knepley       DM           ncdm;
165be4c1c3eSMatthew G. Knepley       PetscSection cs;
1665a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
167be4c1c3eSMatthew G. Knepley 
1686858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1699566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
170462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1715a0206caSToby Isaac       if (pEndMax >= 0) {
1726858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1736858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1749566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1755e50ca95SJames Wright         if (dm->coordinates[i].dm->periodic.setup) {
1765e50ca95SJames Wright           ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup;
1775e50ca95SJames Wright           PetscCall(ncdm->periodic.setup(ncdm));
1785e50ca95SJames Wright         }
1796858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1806858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1819566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
182be4c1c3eSMatthew G. Knepley       }
183be4c1c3eSMatthew G. Knepley     }
1846858538eSMatthew G. Knepley   }
1859566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1869566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1879566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
18838221697SMatthew G. Knepley   if (coords) {
1899566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
19038221697SMatthew G. Knepley   } else {
1919566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1929566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
19338221697SMatthew G. Knepley   }
1946858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1956858538eSMatthew G. Knepley   if (coords) {
1966858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1976858538eSMatthew G. Knepley   } else {
1986858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
1996858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
2006858538eSMatthew G. Knepley   }
20190b157c4SStefano Zampini   {
2024fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
2036858538eSMatthew G. Knepley 
2044fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2054fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
206c6b900c6SMatthew G. Knepley   }
20734aa8a36SMatthew G. Knepley   {
20834aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
20934aa8a36SMatthew G. Knepley 
2109566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2119566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
21234aa8a36SMatthew G. Knepley   }
2133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21438221697SMatthew G. Knepley }
21538221697SMatthew G. Knepley 
2165d83a8b1SBarry Smith /*@
2175d83a8b1SBarry Smith   DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2189a42bb27SBarry Smith 
21920f4b53cSBarry Smith   Logically Collective
2209a42bb27SBarry Smith 
221147403d9SBarry Smith   Input Parameters:
22232546409SMatthew G. Knepley + dm    - initial distributed array
223bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2249a42bb27SBarry Smith 
22520f4b53cSBarry Smith   Options Database Key:
226147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2279a42bb27SBarry Smith 
2289a42bb27SBarry Smith   Level: intermediate
2299a42bb27SBarry Smith 
23060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
231bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2329a42bb27SBarry Smith @*/
23332546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
234d71ae5a4SJacob Faibussowitsch {
23532546409SMatthew G. Knepley   char *tmp;
23632546409SMatthew G. Knepley 
2379a42bb27SBarry Smith   PetscFunctionBegin;
23832546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23932546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
24032546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
24132546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
24232546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2449a42bb27SBarry Smith }
2459a42bb27SBarry Smith 
2465d83a8b1SBarry Smith /*@
247bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
248c0dedaeaSBarry Smith 
24920f4b53cSBarry Smith   Logically Collective
250c0dedaeaSBarry Smith 
251c0dedaeaSBarry Smith   Input Parameter:
252c0dedaeaSBarry Smith . da - initial distributed array
253c0dedaeaSBarry Smith 
254c0dedaeaSBarry Smith   Output Parameter:
255c0dedaeaSBarry Smith . ctype - the vector type
256c0dedaeaSBarry Smith 
257c0dedaeaSBarry Smith   Level: intermediate
258c0dedaeaSBarry Smith 
25960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
260c0dedaeaSBarry Smith @*/
261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
262d71ae5a4SJacob Faibussowitsch {
263c0dedaeaSBarry Smith   PetscFunctionBegin;
264c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
265c0dedaeaSBarry Smith   *ctype = da->vectype;
2663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
267c0dedaeaSBarry Smith }
268c0dedaeaSBarry Smith 
2695f1ad066SMatthew G Knepley /*@
270bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2715f1ad066SMatthew G Knepley 
27220f4b53cSBarry Smith   Not Collective
2735f1ad066SMatthew G Knepley 
2745f1ad066SMatthew G Knepley   Input Parameter:
275bb7acecfSBarry Smith . v - The `Vec`
2765f1ad066SMatthew G Knepley 
2775f1ad066SMatthew G Knepley   Output Parameter:
278bb7acecfSBarry Smith . dm - The `DM`
2795f1ad066SMatthew G Knepley 
2805f1ad066SMatthew G Knepley   Level: intermediate
2815f1ad066SMatthew G Knepley 
282bb7acecfSBarry Smith   Note:
283bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
284bb7acecfSBarry Smith 
2851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2865f1ad066SMatthew G Knepley @*/
287d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
288d71ae5a4SJacob Faibussowitsch {
2895f1ad066SMatthew G Knepley   PetscFunctionBegin;
2905f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2914f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2929566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2945f1ad066SMatthew G Knepley }
2955f1ad066SMatthew G Knepley 
2965f1ad066SMatthew G Knepley /*@
297bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
2985f1ad066SMatthew G Knepley 
29920f4b53cSBarry Smith   Not Collective
3005f1ad066SMatthew G Knepley 
3015f1ad066SMatthew G Knepley   Input Parameters:
302bb7acecfSBarry Smith + v  - The `Vec`
303bb7acecfSBarry Smith - dm - The `DM`
3045f1ad066SMatthew G Knepley 
30520f4b53cSBarry Smith   Level: developer
30620f4b53cSBarry Smith 
30773ff1848SBarry Smith   Notes:
308bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
309d9805387SMatthew G. Knepley 
310bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
311bb7acecfSBarry Smith 
3121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3135f1ad066SMatthew G Knepley @*/
314d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
315d71ae5a4SJacob Faibussowitsch {
3165f1ad066SMatthew G Knepley   PetscFunctionBegin;
3175f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
318d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3199566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3215f1ad066SMatthew G Knepley }
3225f1ad066SMatthew G Knepley 
323cc4c1da9SBarry Smith /*@
324bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3258f1509bcSBarry Smith 
32620f4b53cSBarry Smith   Logically Collective
3278f1509bcSBarry Smith 
3288f1509bcSBarry Smith   Input Parameters:
329bb7acecfSBarry Smith + dm    - the `DM` context
3308f1509bcSBarry Smith - ctype - the matrix type
3318f1509bcSBarry Smith 
33220f4b53cSBarry Smith   Options Database Key:
3338f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3348f1509bcSBarry Smith 
3358f1509bcSBarry Smith   Level: intermediate
3368f1509bcSBarry Smith 
3371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
338bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3398f1509bcSBarry Smith @*/
340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
341d71ae5a4SJacob Faibussowitsch {
3428f1509bcSBarry Smith   PetscFunctionBegin;
3438f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3448f1509bcSBarry Smith   dm->coloringtype = ctype;
3453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3468f1509bcSBarry Smith }
3478f1509bcSBarry Smith 
348cc4c1da9SBarry Smith /*@
349bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
350521d9a4cSLisandro Dalcin 
35120f4b53cSBarry Smith   Logically Collective
352521d9a4cSLisandro Dalcin 
353521d9a4cSLisandro Dalcin   Input Parameter:
354bb7acecfSBarry Smith . dm - the `DM` context
3558f1509bcSBarry Smith 
3568f1509bcSBarry Smith   Output Parameter:
3578f1509bcSBarry Smith . ctype - the matrix type
3588f1509bcSBarry Smith 
35920f4b53cSBarry Smith   Options Database Key:
3608f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3618f1509bcSBarry Smith 
3628f1509bcSBarry Smith   Level: intermediate
3638f1509bcSBarry Smith 
3641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36542747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3668f1509bcSBarry Smith @*/
367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
368d71ae5a4SJacob Faibussowitsch {
3698f1509bcSBarry Smith   PetscFunctionBegin;
3708f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3718f1509bcSBarry Smith   *ctype = dm->coloringtype;
3723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3738f1509bcSBarry Smith }
3748f1509bcSBarry Smith 
375cc4c1da9SBarry Smith /*@
376bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3778f1509bcSBarry Smith 
37820f4b53cSBarry Smith   Logically Collective
3798f1509bcSBarry Smith 
3808f1509bcSBarry Smith   Input Parameters:
381bb7acecfSBarry Smith + dm    - the `DM` context
382bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
383521d9a4cSLisandro Dalcin 
38420f4b53cSBarry Smith   Options Database Key:
385bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
386521d9a4cSLisandro Dalcin 
387521d9a4cSLisandro Dalcin   Level: intermediate
388521d9a4cSLisandro Dalcin 
38942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
390521d9a4cSLisandro Dalcin @*/
391d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
392d71ae5a4SJacob Faibussowitsch {
39332546409SMatthew G. Knepley   char *tmp;
39432546409SMatthew G. Knepley 
395521d9a4cSLisandro Dalcin   PetscFunctionBegin;
396521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39732546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
39832546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
3999566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
40032546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
4013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
402521d9a4cSLisandro Dalcin }
403521d9a4cSLisandro Dalcin 
404cc4c1da9SBarry Smith /*@
40520f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
406c0dedaeaSBarry Smith 
40720f4b53cSBarry Smith   Logically Collective
408c0dedaeaSBarry Smith 
409c0dedaeaSBarry Smith   Input Parameter:
410bb7acecfSBarry Smith . dm - the `DM` context
411c0dedaeaSBarry Smith 
412c0dedaeaSBarry Smith   Output Parameter:
413c0dedaeaSBarry Smith . ctype - the matrix type
414c0dedaeaSBarry Smith 
415c0dedaeaSBarry Smith   Level: intermediate
416c0dedaeaSBarry Smith 
41742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
418c0dedaeaSBarry Smith @*/
419d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
420d71ae5a4SJacob Faibussowitsch {
421c0dedaeaSBarry Smith   PetscFunctionBegin;
422c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
423c0dedaeaSBarry Smith   *ctype = dm->mattype;
4243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
425c0dedaeaSBarry Smith }
426c0dedaeaSBarry Smith 
427c688c046SMatthew G Knepley /*@
428bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
429c688c046SMatthew G Knepley 
43020f4b53cSBarry Smith   Not Collective
431c688c046SMatthew G Knepley 
432c688c046SMatthew G Knepley   Input Parameter:
433bb7acecfSBarry Smith . A - The `Mat`
434c688c046SMatthew G Knepley 
435c688c046SMatthew G Knepley   Output Parameter:
436bb7acecfSBarry Smith . dm - The `DM`
437c688c046SMatthew G Knepley 
438c688c046SMatthew G Knepley   Level: intermediate
439c688c046SMatthew G Knepley 
440bb7acecfSBarry Smith   Note:
441bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
442bb7acecfSBarry Smith 
44373ff1848SBarry Smith   Developer Note:
444bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4458f1509bcSBarry Smith 
4461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
447c688c046SMatthew G Knepley @*/
448d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
449d71ae5a4SJacob Faibussowitsch {
450c688c046SMatthew G Knepley   PetscFunctionBegin;
451c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4524f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4539566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
455c688c046SMatthew G Knepley }
456c688c046SMatthew G Knepley 
457c688c046SMatthew G Knepley /*@
458bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
459c688c046SMatthew G Knepley 
46020f4b53cSBarry Smith   Not Collective
461c688c046SMatthew G Knepley 
462c688c046SMatthew G Knepley   Input Parameters:
46320f4b53cSBarry Smith + A  - The `Mat`
46420f4b53cSBarry Smith - dm - The `DM`
465c688c046SMatthew G Knepley 
466bb7acecfSBarry Smith   Level: developer
467c688c046SMatthew G Knepley 
468bb7acecfSBarry Smith   Note:
469bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
470bb7acecfSBarry Smith 
47173ff1848SBarry Smith   Developer Note:
472bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
473bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4748f1509bcSBarry Smith 
4751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
476c688c046SMatthew G Knepley @*/
477d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
478d71ae5a4SJacob Faibussowitsch {
479c688c046SMatthew G Knepley   PetscFunctionBegin;
480c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4818865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4829566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
484c688c046SMatthew G Knepley }
485c688c046SMatthew G Knepley 
486cc4c1da9SBarry Smith /*@
487bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4889a42bb27SBarry Smith 
48920f4b53cSBarry Smith   Logically Collective
4909a42bb27SBarry Smith 
491d8d19677SJose E. Roman   Input Parameters:
49260225df5SJacob Faibussowitsch + dm     - the `DM` context
493bb7acecfSBarry Smith - prefix - the prefix to prepend
4949a42bb27SBarry Smith 
49520f4b53cSBarry Smith   Level: advanced
49620f4b53cSBarry Smith 
49720f4b53cSBarry Smith   Note:
4989a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
4999a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
5009a42bb27SBarry Smith 
5011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
5029a42bb27SBarry Smith @*/
503d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
504d71ae5a4SJacob Faibussowitsch {
5059a42bb27SBarry Smith   PetscFunctionBegin;
5069a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5079566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5081baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5091baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5119a42bb27SBarry Smith }
5129a42bb27SBarry Smith 
513cc4c1da9SBarry Smith /*@
514da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
515bb7acecfSBarry Smith   `DM` options in the options database.
51631697293SDave May 
51720f4b53cSBarry Smith   Logically Collective
51831697293SDave May 
51931697293SDave May   Input Parameters:
520bb7acecfSBarry Smith + dm     - the `DM` context
521bb7acecfSBarry Smith - prefix - the string to append to the current prefix
52231697293SDave May 
52320f4b53cSBarry Smith   Level: advanced
52420f4b53cSBarry Smith 
52520f4b53cSBarry Smith   Note:
526bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
52731697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
52831697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
52931697293SDave May 
5301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
53131697293SDave May @*/
532d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
533d71ae5a4SJacob Faibussowitsch {
53431697293SDave May   PetscFunctionBegin;
53531697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5369566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53831697293SDave May }
53931697293SDave May 
540cc4c1da9SBarry Smith /*@
54131697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
542bb7acecfSBarry Smith   DM options in the options database.
54331697293SDave May 
54431697293SDave May   Not Collective
54531697293SDave May 
5462fe279fdSBarry Smith   Input Parameter:
547bb7acecfSBarry Smith . dm - the `DM` context
54831697293SDave May 
5492fe279fdSBarry Smith   Output Parameter:
55031697293SDave May . prefix - pointer to the prefix string used is returned
55131697293SDave May 
55231697293SDave May   Level: advanced
55331697293SDave May 
55473ff1848SBarry Smith   Fortran Note:
55520f4b53cSBarry Smith   Pass in a string 'prefix' of
55620f4b53cSBarry Smith   sufficient length to hold the prefix.
55720f4b53cSBarry Smith 
5581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
55931697293SDave May @*/
560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
561d71ae5a4SJacob Faibussowitsch {
56231697293SDave May   PetscFunctionBegin;
56331697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56631697293SDave May }
56731697293SDave May 
56862e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
569d71ae5a4SJacob Faibussowitsch {
5706eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
57188bdff64SToby Isaac 
57288bdff64SToby Isaac   PetscFunctionBegin;
573aab5bcd8SJed Brown   *ncrefct = 0;
57488bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
57588bdff64SToby Isaac     refct--;
57688bdff64SToby Isaac     if (recurseCoarse) {
57788bdff64SToby Isaac       PetscInt coarseCount;
57888bdff64SToby Isaac 
57962e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
58088bdff64SToby Isaac       refct += coarseCount;
58188bdff64SToby Isaac     }
58288bdff64SToby Isaac   }
58388bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
58488bdff64SToby Isaac     refct--;
58588bdff64SToby Isaac     if (recurseFine) {
58688bdff64SToby Isaac       PetscInt fineCount;
58788bdff64SToby Isaac 
58862e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
58988bdff64SToby Isaac       refct += fineCount;
59088bdff64SToby Isaac     }
59188bdff64SToby Isaac   }
59288bdff64SToby Isaac   *ncrefct = refct;
5933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59488bdff64SToby Isaac }
59588bdff64SToby Isaac 
59662e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
59762e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
59862e5d2d2SJDBetteridge {
59962e5d2d2SJDBetteridge   PetscFunctionBegin;
60062e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
6013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60262e5d2d2SJDBetteridge }
60362e5d2d2SJDBetteridge 
604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
605d71ae5a4SJacob Faibussowitsch {
6065d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
607354557abSToby Isaac 
608354557abSToby Isaac   PetscFunctionBegin;
609354557abSToby Isaac   /* destroy the labels */
610354557abSToby Isaac   while (next) {
611354557abSToby Isaac     DMLabelLink tmp = next->next;
612354557abSToby Isaac 
6135d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
614ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6159566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6169566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
617354557abSToby Isaac     next = tmp;
618354557abSToby Isaac   }
6195d80c0bfSVaclav Hapla   dm->labels = NULL;
6203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
621354557abSToby Isaac }
622354557abSToby Isaac 
62366976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
624d71ae5a4SJacob Faibussowitsch {
6256858538eSMatthew G. Knepley   PetscFunctionBegin;
6266858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6276858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6286858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6296858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6306858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6326858538eSMatthew G. Knepley }
6336858538eSMatthew G. Knepley 
6340764c050SBarry Smith /*@
635bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
63647c6ae99SBarry Smith 
63720f4b53cSBarry Smith   Collective
63847c6ae99SBarry Smith 
63947c6ae99SBarry Smith   Input Parameter:
640bb7acecfSBarry Smith . dm - the `DM` object to destroy
64147c6ae99SBarry Smith 
64247c6ae99SBarry Smith   Level: developer
64347c6ae99SBarry Smith 
6441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
64547c6ae99SBarry Smith @*/
646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
647d71ae5a4SJacob Faibussowitsch {
6486eb26441SStefano Zampini   PetscInt cnt;
64947c6ae99SBarry Smith 
65047c6ae99SBarry Smith   PetscFunctionBegin;
6513ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
652f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
65387e657c6SBarry Smith 
65488bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
65562e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
656f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6579371c9d4SSatish Balay   if (--cnt > 0) {
6589371c9d4SSatish Balay     *dm = NULL;
6593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6609371c9d4SSatish Balay   }
661f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
662f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6636eb26441SStefano Zampini 
6649566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6659566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
666974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
667974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6682348bcf4SPeter Brune 
669b17ce1afSJed Brown   /* Destroy the list of hooks */
670c833c3b5SJed Brown   {
671c833c3b5SJed Brown     DMCoarsenHookLink link, next;
672b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
673b17ce1afSJed Brown       next = link->next;
6749566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
675b17ce1afSJed Brown     }
6760298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
677c833c3b5SJed Brown   }
678c833c3b5SJed Brown   {
679c833c3b5SJed Brown     DMRefineHookLink link, next;
680c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
681c833c3b5SJed Brown       next = link->next;
6829566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
683c833c3b5SJed Brown     }
6840298fd71SBarry Smith     (*dm)->refinehook = NULL;
685c833c3b5SJed Brown   }
686be081cd6SPeter Brune   {
687be081cd6SPeter Brune     DMSubDomainHookLink link, next;
688be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
689be081cd6SPeter Brune       next = link->next;
6909566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
691be081cd6SPeter Brune     }
6920298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
693be081cd6SPeter Brune   }
694baf369e7SPeter Brune   {
695baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
696baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
697baf369e7SPeter Brune       next = link->next;
6989566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
699baf369e7SPeter Brune     }
7000298fd71SBarry Smith     (*dm)->gtolhook = NULL;
701baf369e7SPeter Brune   }
702d4d07f1eSToby Isaac   {
703d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
704d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
705d4d07f1eSToby Isaac       next = link->next;
7069566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
707d4d07f1eSToby Isaac     }
708d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
709d4d07f1eSToby Isaac   }
710aa1993deSMatthew G Knepley   /* Destroy the work arrays */
711aa1993deSMatthew G Knepley   {
712aa1993deSMatthew G Knepley     DMWorkLink link, next;
713835f2295SStefano Zampini     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem);
714aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
715aa1993deSMatthew G Knepley       next = link->next;
7169566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7179566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
718aa1993deSMatthew G Knepley     }
7190298fd71SBarry Smith     (*dm)->workin = NULL;
720aa1993deSMatthew G Knepley   }
721c58f1c22SToby Isaac   /* destroy the labels */
7229566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
723f4cdcedcSVaclav Hapla   /* destroy the fields */
7249566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
725f4cdcedcSVaclav Hapla   /* destroy the boundaries */
726e6f8dbb6SToby Isaac   {
727e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
728e6f8dbb6SToby Isaac     while (next) {
729e6f8dbb6SToby Isaac       DMBoundary b = next;
730e6f8dbb6SToby Isaac 
731e6f8dbb6SToby Isaac       next = b->next;
7329566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
733e6f8dbb6SToby Isaac     }
734e6f8dbb6SToby Isaac   }
735b17ce1afSJed Brown 
7369566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7379566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7389566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
73952536dc3SBarry Smith 
74048a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7419566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7429566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7439566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7449566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74588ed4aceSMatthew G Knepley 
7469566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7479566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
748adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7509566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7519566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7529566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
75448a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7559566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
756e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7579566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
75848a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7596eb26441SStefano Zampini 
7609566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
76148a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7629566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7634fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7649566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7659566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7666858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7676858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7689566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7699566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7709566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
771ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
772ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
773ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
774ddedc8f6SJames Wright   }
775ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7766636e97aSMatthew G Knepley 
7779566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7789566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
779e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7809566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
781732e2eb9SMatthew G Knepley 
782213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7839566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
784d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
785f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7869566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7879566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
788f918ec44SMatthew G. Knepley #endif
789435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7909566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79247c6ae99SBarry Smith }
79347c6ae99SBarry Smith 
794d7bf68aeSBarry Smith /*@
795bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
796d7bf68aeSBarry Smith 
79720f4b53cSBarry Smith   Collective
798d7bf68aeSBarry Smith 
799d7bf68aeSBarry Smith   Input Parameter:
800bb7acecfSBarry Smith . dm - the `DM` object to setup
801d7bf68aeSBarry Smith 
802bb7acecfSBarry Smith   Level: intermediate
803d7bf68aeSBarry Smith 
804bb7acecfSBarry Smith   Note:
805bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
806bb7acecfSBarry Smith 
8071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
808d7bf68aeSBarry Smith @*/
809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
810d71ae5a4SJacob Faibussowitsch {
811d7bf68aeSBarry Smith   PetscFunctionBegin;
812171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8133ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
814dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8158387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
817d7bf68aeSBarry Smith }
818d7bf68aeSBarry Smith 
819d7bf68aeSBarry Smith /*@
820bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
821d7bf68aeSBarry Smith 
82220f4b53cSBarry Smith   Collective
823d7bf68aeSBarry Smith 
824d7bf68aeSBarry Smith   Input Parameter:
825bb7acecfSBarry Smith . dm - the `DM` object to set options for
826d7bf68aeSBarry Smith 
82720f4b53cSBarry Smith   Options Database Keys:
828bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
829bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
830bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
831a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
83220f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
83322d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...>           - List of prefixes for option processing phases
83420f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8359318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
836cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8375dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8389318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8399318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8409318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
841bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
842bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
843b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool>                             - `PETSC_TRUE` turns on topological orientation (flipping edges and faces)
8449318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
845be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
846be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
847be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8489318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8499318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8509318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
851bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8529318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8539318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8549318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8559318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
856bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8579318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8589318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8599318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8609318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
861bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
862d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
865d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
866d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
867909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
868909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8699318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8709318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8719318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
87220f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
873d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
87420f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
875bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
876bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
877bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
878bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
879bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
880384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
881d7bf68aeSBarry Smith 
88295eb5ee5SVaclav Hapla   Level: intermediate
88395eb5ee5SVaclav Hapla 
8848e704042SBarry Smith   Note:
8858e704042SBarry Smith   For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called.
8868e704042SBarry Smith 
8871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
888bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
8898e704042SBarry Smith          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()`
890d7bf68aeSBarry Smith @*/
891d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
892d71ae5a4SJacob Faibussowitsch {
8937781c08eSBarry Smith   char      typeName[256];
894ca266f36SBarry Smith   PetscBool flg;
895d7bf68aeSBarry Smith 
896d7bf68aeSBarry Smith   PetscFunctionBegin;
897171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89849be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
8999566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9009566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
901dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
902d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9039566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9051baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9069566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9071baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
908863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9099566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
911eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
912dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
913f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
914dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
915d0609cedSBarry Smith   PetscOptionsEnd();
9163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
917d7bf68aeSBarry Smith }
918d7bf68aeSBarry Smith 
919ffeef943SBarry Smith /*@
920bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
921fe2efc57SMark 
92220f4b53cSBarry Smith   Collective
923fe2efc57SMark 
924fe2efc57SMark   Input Parameters:
925bb7acecfSBarry Smith + dm   - the `DM` object
92620f4b53cSBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
92760225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
928fe2efc57SMark 
929fe2efc57SMark   Level: intermediate
930bb7acecfSBarry Smith 
931bb7acecfSBarry Smith   Note:
932bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
933bb7acecfSBarry Smith 
93460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
935fe2efc57SMark @*/
936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
937d71ae5a4SJacob Faibussowitsch {
938fe2efc57SMark   PetscFunctionBegin;
939fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9409566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
942fe2efc57SMark }
943fe2efc57SMark 
944ffeef943SBarry Smith /*@
945bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
946bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
94747c6ae99SBarry Smith 
94820f4b53cSBarry Smith   Collective
94947c6ae99SBarry Smith 
950d8d19677SJose E. Roman   Input Parameters:
951bb7acecfSBarry Smith + dm - the `DM` object to view
95247c6ae99SBarry Smith - v  - the viewer
95347c6ae99SBarry Smith 
95420f4b53cSBarry Smith   Level: beginner
95520f4b53cSBarry Smith 
95649c89c76SBlaise Bourdin   Notes:
95749c89c76SBlaise Bourdin 
95849c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX`
959bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
960bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
961cd7e8a5eSksagiyam 
96249c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels)
96349c89c76SBlaise Bourdin   consists of sequentially numbered cells.
96449c89c76SBlaise Bourdin 
96549c89c76SBlaise Bourdin   If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written.
96649c89c76SBlaise Bourdin 
96749c89c76SBlaise Bourdin   Only TRI, TET, QUAD, and HEX cells are supported.
96849c89c76SBlaise Bourdin 
96949c89c76SBlaise Bourdin   `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2.
97049c89c76SBlaise Bourdin   The order of the mesh shall be set using `PetscViewerExodusIISetOrder()`
97149c89c76SBlaise Bourdin 
972d7c1f440SPierre Jolivet   Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`.
97349c89c76SBlaise Bourdin 
9741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
97547c6ae99SBarry Smith @*/
976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
977d71ae5a4SJacob Faibussowitsch {
97832c0f0efSBarry Smith   PetscBool         isbinary;
97976a8abe0SBarry Smith   PetscMPIInt       size;
98076a8abe0SBarry Smith   PetscViewerFormat format;
98147c6ae99SBarry Smith 
98247c6ae99SBarry Smith   PetscFunctionBegin;
983171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
98448a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
985b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
98674903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
98774903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
98874903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
98974903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
99074903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
99174903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
99274903a4fSStefano Zampini      in an error here */
99374903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9949566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
995b1b135c8SBarry Smith 
996*42d0c57aSJames Wright   PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0));
9979566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
9989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
9993ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
10009566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
10019566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
100232c0f0efSBarry Smith   if (isbinary) {
100355849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
100432c0f0efSBarry Smith     char     type[256];
100532c0f0efSBarry Smith 
10069566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
1007c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
10089566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
100932c0f0efSBarry Smith   }
1010dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
1011*42d0c57aSJames Wright   PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0));
10123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
101347c6ae99SBarry Smith }
101447c6ae99SBarry Smith 
101547c6ae99SBarry Smith /*@
1016bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1017bb7acecfSBarry Smith   that is it has no ghost locations.
101847c6ae99SBarry Smith 
101920f4b53cSBarry Smith   Collective
102047c6ae99SBarry Smith 
102147c6ae99SBarry Smith   Input Parameter:
1022bb7acecfSBarry Smith . dm - the `DM` object
102347c6ae99SBarry Smith 
102447c6ae99SBarry Smith   Output Parameter:
102547c6ae99SBarry Smith . vec - the global vector
102647c6ae99SBarry Smith 
1027073dac72SJed Brown   Level: beginner
102847c6ae99SBarry Smith 
10291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1030bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
103147c6ae99SBarry Smith @*/
1032d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1033d71ae5a4SJacob Faibussowitsch {
103447c6ae99SBarry Smith   PetscFunctionBegin;
1035171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10364f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1037dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
103876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1039c6b011d8SStefano Zampini     DM vdm;
1040c6b011d8SStefano Zampini 
10419566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10427a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1043c6b011d8SStefano Zampini   }
10443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104547c6ae99SBarry Smith }
104647c6ae99SBarry Smith 
104747c6ae99SBarry Smith /*@
1048bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
104947c6ae99SBarry Smith 
105047c6ae99SBarry Smith   Not Collective
105147c6ae99SBarry Smith 
105247c6ae99SBarry Smith   Input Parameter:
1053bb7acecfSBarry Smith . dm - the `DM` object
105447c6ae99SBarry Smith 
105547c6ae99SBarry Smith   Output Parameter:
105647c6ae99SBarry Smith . vec - the local vector
105747c6ae99SBarry Smith 
1058073dac72SJed Brown   Level: beginner
105947c6ae99SBarry Smith 
106020f4b53cSBarry Smith   Note:
1061bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1062bb7acecfSBarry Smith 
10631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1064bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
106547c6ae99SBarry Smith @*/
1066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1067d71ae5a4SJacob Faibussowitsch {
106847c6ae99SBarry Smith   PetscFunctionBegin;
1069171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10704f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1071dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
107276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1073c6b011d8SStefano Zampini     DM vdm;
1074c6b011d8SStefano Zampini 
10759566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10767a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1077c6b011d8SStefano Zampini   }
10783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
107947c6ae99SBarry Smith }
108047c6ae99SBarry Smith 
10811411c6eeSJed Brown /*@
1082bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10831411c6eeSJed Brown 
108420f4b53cSBarry Smith   Collective
10851411c6eeSJed Brown 
10861411c6eeSJed Brown   Input Parameter:
1087bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10881411c6eeSJed Brown 
10891411c6eeSJed Brown   Output Parameter:
10901411c6eeSJed Brown . ltog - the mapping
10911411c6eeSJed Brown 
1092bb7acecfSBarry Smith   Level: advanced
10931411c6eeSJed Brown 
10941411c6eeSJed Brown   Notes:
1095bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10961411c6eeSJed Brown 
1097bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1098bb7acecfSBarry Smith   need to use this function with those objects.
1099bb7acecfSBarry Smith 
1100bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1101bb7acecfSBarry Smith 
110260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1103bb7acecfSBarry Smith           `DMCreateMatrix()`
11041411c6eeSJed Brown @*/
1105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1106d71ae5a4SJacob Faibussowitsch {
11070be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
11081411c6eeSJed Brown 
11091411c6eeSJed Brown   PetscFunctionBegin;
11101411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11114f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
11121411c6eeSJed Brown   if (!dm->ltogmap) {
111337d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
111437d0c07bSMatthew G Knepley 
11159566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
111637d0c07bSMatthew G Knepley     if (section) {
1117a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
111837d0c07bSMatthew G Knepley       PetscInt       *ltog;
1119ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
112037d0c07bSMatthew G Knepley 
11219566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11229566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11239566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11249566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
112537d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1126e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
112737d0c07bSMatthew G Knepley 
112837d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11299566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11309566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11319566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11329566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11331a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11341a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1135ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11365227eafbSStefano Zampini 
1137e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11385227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1139e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1140e6befd46SJed Brown             cind++;
1141e6befd46SJed Brown           } else {
11425227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1143e6befd46SJed Brown           }
114437d0c07bSMatthew G Knepley         }
114537d0c07bSMatthew G Knepley       }
1146bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11471690c2aeSBarry Smith       bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs;
11489371c9d4SSatish Balay       bsLocal[1] = bs;
11499566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11509371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11519371c9d4SSatish Balay         bs = 1;
11529371c9d4SSatish Balay       } else {
11539371c9d4SSatish Balay         bs = bsMinMax[0];
11549371c9d4SSatish Balay       }
11557591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11567591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1157ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1158ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1159ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1160ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1161ca469d19SJed Brown         }
1162ccf3bd66SMatthew G. Knepley         n /= bs;
1163ccf3bd66SMatthew G. Knepley       }
11649566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1165dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
116637d0c07bSMatthew G Knepley   }
11671411c6eeSJed Brown   *ltog = dm->ltogmap;
11683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11691411c6eeSJed Brown }
11701411c6eeSJed Brown 
11711411c6eeSJed Brown /*@
1172bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11731411c6eeSJed Brown 
11741411c6eeSJed Brown   Not Collective
11751411c6eeSJed Brown 
11761411c6eeSJed Brown   Input Parameter:
1177bb7acecfSBarry Smith . dm - the `DM` with block structure
11781411c6eeSJed Brown 
11791411c6eeSJed Brown   Output Parameter:
11801411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11811411c6eeSJed Brown 
11821411c6eeSJed Brown   Level: intermediate
11831411c6eeSJed Brown 
118473ff1848SBarry Smith   Notes:
1185bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1186bb7acecfSBarry Smith 
1187bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1188bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1189bb7acecfSBarry Smith 
11901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11911411c6eeSJed Brown @*/
1192d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1193d71ae5a4SJacob Faibussowitsch {
11941411c6eeSJed Brown   PetscFunctionBegin;
11951411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11964f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
11977a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
11981411c6eeSJed Brown   *bs = dm->bs;
11993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12001411c6eeSJed Brown }
12011411c6eeSJed Brown 
1202ffeef943SBarry Smith /*@
1203bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1204bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
120547c6ae99SBarry Smith 
120620f4b53cSBarry Smith   Collective
120747c6ae99SBarry Smith 
1208d8d19677SJose E. Roman   Input Parameters:
1209bb7acecfSBarry Smith + dmc - the `DM` object
1210bb7acecfSBarry Smith - dmf - the second, finer `DM` object
121147c6ae99SBarry Smith 
1212d8d19677SJose E. Roman   Output Parameters:
121347c6ae99SBarry Smith + mat - the interpolation
1214b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()`
121547c6ae99SBarry Smith 
121647c6ae99SBarry Smith   Level: developer
121747c6ae99SBarry Smith 
121895452b02SPatrick Sanan   Notes:
1219bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1220bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1221d52bd9f3SBarry Smith 
1222bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1223bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
122485afcc9aSBarry Smith 
12251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
122647c6ae99SBarry Smith @*/
1227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1228d71ae5a4SJacob Faibussowitsch {
122947c6ae99SBarry Smith   PetscFunctionBegin;
1230a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1231a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12324f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1234dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
123747c6ae99SBarry Smith }
123847c6ae99SBarry Smith 
12393ad4599aSBarry Smith /*@
1240a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1241a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12422ed6491fSPatrick Sanan 
12432ed6491fSPatrick Sanan   Input Parameters:
1244bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1245bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12462ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12472ed6491fSPatrick Sanan 
12482ed6491fSPatrick Sanan   Output Parameter:
12492ed6491fSPatrick Sanan . scale - the scaled vector
12502ed6491fSPatrick Sanan 
1251bb7acecfSBarry Smith   Level: advanced
12522ed6491fSPatrick Sanan 
125373ff1848SBarry Smith   Note:
1254a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1255a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1256a4e35b19SJacob Faibussowitsch 
125773ff1848SBarry Smith   Developer Note:
1258bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1259e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1260e9c74fd6SRichard Tran Mills 
126160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12622ed6491fSPatrick Sanan @*/
1263d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1264d71ae5a4SJacob Faibussowitsch {
12652ed6491fSPatrick Sanan   Vec         fine;
12662ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12679704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1268e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12699704db99SRichard Tran Mills #endif
12702ed6491fSPatrick Sanan 
12712ed6491fSPatrick Sanan   PetscFunctionBegin;
12729566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12739566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12749566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12759704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12769704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12779704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12789704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12799566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1280e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12819566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12829566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12839566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
128483aa49f4SRichard Tran Mills   }
12859704db99SRichard Tran Mills #endif
12869566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12879566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12889566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12902ed6491fSPatrick Sanan }
12912ed6491fSPatrick Sanan 
12922ed6491fSPatrick Sanan /*@
1293bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1294bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12953ad4599aSBarry Smith 
129620f4b53cSBarry Smith   Collective
12973ad4599aSBarry Smith 
1298d8d19677SJose E. Roman   Input Parameters:
1299bb7acecfSBarry Smith + dmc - the `DM` object
1300bb7acecfSBarry Smith - dmf - the second, finer `DM` object
13013ad4599aSBarry Smith 
13023ad4599aSBarry Smith   Output Parameter:
13033ad4599aSBarry Smith . mat - the restriction
13043ad4599aSBarry Smith 
13053ad4599aSBarry Smith   Level: developer
13063ad4599aSBarry Smith 
1307bb7acecfSBarry Smith   Note:
1308bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1309bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
13103ad4599aSBarry Smith 
13111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
13123ad4599aSBarry Smith @*/
1313d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1314d71ae5a4SJacob Faibussowitsch {
13153ad4599aSBarry Smith   PetscFunctionBegin;
1316a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1317a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13184f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1320dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13233ad4599aSBarry Smith }
13243ad4599aSBarry Smith 
132547c6ae99SBarry Smith /*@
1326a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
132747c6ae99SBarry Smith 
132820f4b53cSBarry Smith   Collective
132947c6ae99SBarry Smith 
1330d8d19677SJose E. Roman   Input Parameters:
1331bb7acecfSBarry Smith + dac - the `DM` object
1332bb7acecfSBarry Smith - daf - the second, finer `DM` object
133347c6ae99SBarry Smith 
133447c6ae99SBarry Smith   Output Parameter:
13356dbf9973SLawrence Mitchell . mat - the injection
133647c6ae99SBarry Smith 
133747c6ae99SBarry Smith   Level: developer
133847c6ae99SBarry Smith 
1339a4e35b19SJacob Faibussowitsch   Notes:
1340a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1341a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1342a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1343a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1344a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1345a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1346a4e35b19SJacob Faibussowitsch 
1347bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1348bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
134985afcc9aSBarry Smith 
13501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1351bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
135247c6ae99SBarry Smith @*/
1353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1354d71ae5a4SJacob Faibussowitsch {
135547c6ae99SBarry Smith   PetscFunctionBegin;
1356a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1357a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13584f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13599566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1360dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
136347c6ae99SBarry Smith }
136447c6ae99SBarry Smith 
1365b412c318SBarry Smith /*@
1366bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1367bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1368bd041c0cSMatthew G. Knepley 
136920f4b53cSBarry Smith   Collective
1370bd041c0cSMatthew G. Knepley 
1371d8d19677SJose E. Roman   Input Parameters:
1372bb7acecfSBarry Smith + dmc - the target `DM` object
13738c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL`
1374bd041c0cSMatthew G. Knepley 
1375bd041c0cSMatthew G. Knepley   Output Parameter:
1376b4937a87SMatthew G. Knepley . mat - the mass matrix
1377bd041c0cSMatthew G. Knepley 
1378bd041c0cSMatthew G. Knepley   Level: developer
1379bd041c0cSMatthew G. Knepley 
1380bb7acecfSBarry Smith   Notes:
1381bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1382bb7acecfSBarry Smith 
13838c1c0954SStefano Zampini   if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1384bb7acecfSBarry Smith 
138542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1386bd041c0cSMatthew G. Knepley @*/
1387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1388d71ae5a4SJacob Faibussowitsch {
1389bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1390b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
13918c1c0954SStefano Zampini   if (!dmf) dmf = dmc;
1392b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13934f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13948c1c0954SStefano Zampini   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0));
1395dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13968c1c0954SStefano Zampini   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0));
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398b4937a87SMatthew G. Knepley }
1399b4937a87SMatthew G. Knepley 
1400b4937a87SMatthew G. Knepley /*@
1401bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1402b4937a87SMatthew G. Knepley 
140320f4b53cSBarry Smith   Collective
1404b4937a87SMatthew G. Knepley 
1405b4937a87SMatthew G. Knepley   Input Parameter:
1406bb7acecfSBarry Smith . dm - the `DM` object
1407b4937a87SMatthew G. Knepley 
14087dcfde4dSJose E. Roman   Output Parameters:
14098e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector
14108e9849d2SStefano Zampini - lm  - the global lumped mass matrix, which is a diagonal matrix, represented as a vector
1411b4937a87SMatthew G. Knepley 
1412b4937a87SMatthew G. Knepley   Level: developer
1413b4937a87SMatthew G. Knepley 
1414bb7acecfSBarry Smith   Note:
1415bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1416bb7acecfSBarry Smith 
141760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1418b4937a87SMatthew G. Knepley @*/
14198e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm)
1420d71ae5a4SJacob Faibussowitsch {
1421b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1422b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14238e9849d2SStefano Zampini   if (llm) PetscAssertPointer(llm, 2);
14248e9849d2SStefano Zampini   if (lm) PetscAssertPointer(lm, 3);
14258e9849d2SStefano Zampini   if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm);
14263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1427bd041c0cSMatthew G. Knepley }
1428bd041c0cSMatthew G. Knepley 
1429bd041c0cSMatthew G. Knepley /*@
1430bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1431bb7acecfSBarry Smith   of a PDE on the `DM`.
143247c6ae99SBarry Smith 
143320f4b53cSBarry Smith   Collective
143447c6ae99SBarry Smith 
1435d8d19677SJose E. Roman   Input Parameters:
1436bb7acecfSBarry Smith + dm    - the `DM` object
1437bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
143847c6ae99SBarry Smith 
143947c6ae99SBarry Smith   Output Parameter:
144047c6ae99SBarry Smith . coloring - the coloring
144147c6ae99SBarry Smith 
14421bf8429eSBarry Smith   Level: developer
14431bf8429eSBarry Smith 
1444ec5066bdSBarry Smith   Notes:
1445bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1446bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1447ec5066bdSBarry Smith 
1448bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14491bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14501bf8429eSBarry Smith   otherwise an error will be generated.
1451ec5066bdSBarry Smith 
14521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1453aab9d709SJed Brown @*/
1454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1455d71ae5a4SJacob Faibussowitsch {
145647c6ae99SBarry Smith   PetscFunctionBegin;
1457171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14584f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1459dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
146147c6ae99SBarry Smith }
146247c6ae99SBarry Smith 
1463b412c318SBarry Smith /*@
1464bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
146547c6ae99SBarry Smith 
146620f4b53cSBarry Smith   Collective
146747c6ae99SBarry Smith 
146847c6ae99SBarry Smith   Input Parameter:
1469bb7acecfSBarry Smith . dm - the `DM` object
147047c6ae99SBarry Smith 
147147c6ae99SBarry Smith   Output Parameter:
147247c6ae99SBarry Smith . mat - the empty Jacobian
147347c6ae99SBarry Smith 
147420f4b53cSBarry Smith   Options Database Key:
1475bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1476f27dd7c6SMatthew G. Knepley 
147720f4b53cSBarry Smith   Level: beginner
147820f4b53cSBarry Smith 
147995452b02SPatrick Sanan   Notes:
148095452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
148194013140SBarry Smith   do not need to do it yourself.
148294013140SBarry Smith 
148394013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1484bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
148594013140SBarry Smith 
1486bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
148794013140SBarry Smith   internally by PETSc.
148894013140SBarry Smith 
1489bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1490bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
149194013140SBarry Smith 
14921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1493aab9d709SJed Brown @*/
1494d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1495d71ae5a4SJacob Faibussowitsch {
149647c6ae99SBarry Smith   PetscFunctionBegin;
1497171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14984f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
14999566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
15009566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1501dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
150276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1503c6b011d8SStefano Zampini     DM mdm;
1504c6b011d8SStefano Zampini 
15059566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
15067a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1507c6b011d8SStefano Zampini   }
1508e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1509e5e52638SMatthew G. Knepley   if (dm->Nf) {
1510e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1511649ef022SMatthew Knepley     PetscInt     Nf, f;
1512e571a35bSMatthew G. Knepley 
15139566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1514649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1515649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
15169566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15179566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15189566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1519649ef022SMatthew Knepley         break;
1520e571a35bSMatthew G. Knepley       }
1521649ef022SMatthew Knepley     }
1522649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1523649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
15249566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15259566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15269566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1527e571a35bSMatthew G. Knepley       }
1528e571a35bSMatthew G. Knepley     }
1529e571a35bSMatthew G. Knepley   }
15309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
153247c6ae99SBarry Smith }
153347c6ae99SBarry Smith 
1534732e2eb9SMatthew G Knepley /*@
1535a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1536a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1537a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1538aa0f6e3cSJed Brown 
153920f4b53cSBarry Smith   Logically Collective
1540aa0f6e3cSJed Brown 
1541aa0f6e3cSJed Brown   Input Parameters:
1542bb7acecfSBarry Smith + dm   - the `DM`
1543bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1544aa0f6e3cSJed Brown 
1545aa0f6e3cSJed Brown   Level: developer
1546aa0f6e3cSJed Brown 
154773ff1848SBarry Smith   Note:
1548a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1549a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1550a4e35b19SJacob Faibussowitsch 
15511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1552aa0f6e3cSJed Brown @*/
1553d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1554d71ae5a4SJacob Faibussowitsch {
1555aa0f6e3cSJed Brown   PetscFunctionBegin;
1556aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1557aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1559aa0f6e3cSJed Brown }
1560aa0f6e3cSJed Brown 
1561aa0f6e3cSJed Brown /*@
1562bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1563732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1564732e2eb9SMatthew G Knepley 
156520f4b53cSBarry Smith   Logically Collective
1566732e2eb9SMatthew G Knepley 
1567d8d19677SJose E. Roman   Input Parameters:
1568bb7acecfSBarry Smith + dm   - the `DM`
1569bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1570732e2eb9SMatthew G Knepley 
157120f4b53cSBarry Smith   Options Database Key:
1572bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1573f27dd7c6SMatthew G. Knepley 
157420f4b53cSBarry Smith   Level: developer
157520f4b53cSBarry Smith 
15761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1577732e2eb9SMatthew G Knepley @*/
1578d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1579d71ae5a4SJacob Faibussowitsch {
1580732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1581732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1582732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1584732e2eb9SMatthew G Knepley }
1585732e2eb9SMatthew G Knepley 
1586b06ff27eSHong Zhang /*@
1587bb7acecfSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1588bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1589b06ff27eSHong Zhang 
159020f4b53cSBarry Smith   Logically Collective
1591b06ff27eSHong Zhang 
1592d8d19677SJose E. Roman   Input Parameters:
1593bb7acecfSBarry Smith + dm   - the `DM`
1594da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure
1595b06ff27eSHong Zhang 
1596b06ff27eSHong Zhang   Level: developer
1597bb7acecfSBarry Smith 
15981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1599b06ff27eSHong Zhang @*/
1600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1601d71ae5a4SJacob Faibussowitsch {
1602b06ff27eSHong Zhang   PetscFunctionBegin;
1603b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1604b06ff27eSHong Zhang   dm->structure_only = only;
16053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1606b06ff27eSHong Zhang }
1607b06ff27eSHong Zhang 
1608863027abSJed Brown /*@
1609863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1610863027abSJed Brown 
161120f4b53cSBarry Smith   Logically Collective
1612863027abSJed Brown 
1613863027abSJed Brown   Input Parameters:
1614863027abSJed Brown + dm    - the `DM`
1615863027abSJed Brown - btype - block by topological point or field node
1616863027abSJed Brown 
161720f4b53cSBarry Smith   Options Database Key:
16180e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1619863027abSJed Brown 
162020f4b53cSBarry Smith   Level: advanced
162120f4b53cSBarry Smith 
16221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1623863027abSJed Brown @*/
1624863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1625863027abSJed Brown {
1626863027abSJed Brown   PetscFunctionBegin;
1627863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1628863027abSJed Brown   dm->blocking_type = btype;
16293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1630863027abSJed Brown }
1631863027abSJed Brown 
1632863027abSJed Brown /*@
1633863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1634863027abSJed Brown 
1635863027abSJed Brown   Not Collective
1636863027abSJed Brown 
16372fe279fdSBarry Smith   Input Parameter:
1638863027abSJed Brown . dm - the `DM`
1639863027abSJed Brown 
16402fe279fdSBarry Smith   Output Parameter:
1641863027abSJed Brown . btype - block by topological point or field node
1642863027abSJed Brown 
1643863027abSJed Brown   Level: advanced
1644863027abSJed Brown 
16451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1646863027abSJed Brown @*/
1647863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1648863027abSJed Brown {
1649863027abSJed Brown   PetscFunctionBegin;
1650863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16514f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1652863027abSJed Brown   *btype = dm->blocking_type;
16533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1654863027abSJed Brown }
1655863027abSJed Brown 
1656a89ea682SMatthew G Knepley /*@C
1657bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1658a89ea682SMatthew G Knepley 
1659a89ea682SMatthew G Knepley   Not Collective
1660a89ea682SMatthew G Knepley 
1661a89ea682SMatthew G Knepley   Input Parameters:
1662bb7acecfSBarry Smith + dm    - the `DM` object
1663a5b23f4aSJose E. Roman . count - The minimum size
166420f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1665a89ea682SMatthew G Knepley 
1666a89ea682SMatthew G Knepley   Output Parameter:
166760225df5SJacob Faibussowitsch . mem - the work array
1668a89ea682SMatthew G Knepley 
1669a89ea682SMatthew G Knepley   Level: developer
1670a89ea682SMatthew G Knepley 
167173ff1848SBarry Smith   Notes:
1672da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1673bb7acecfSBarry Smith 
1674bb7acecfSBarry Smith   The array may contain nonzero values
1675bb7acecfSBarry Smith 
16761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1677a89ea682SMatthew G Knepley @*/
1678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1679d71ae5a4SJacob Faibussowitsch {
1680aa1993deSMatthew G Knepley   DMWorkLink  link;
168169291d52SBarry Smith   PetscMPIInt dsize;
1682a89ea682SMatthew G Knepley 
1683a89ea682SMatthew G Knepley   PetscFunctionBegin;
1684a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16854f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1686442f3b32SStefano Zampini   if (!count) {
1687442f3b32SStefano Zampini     *(void **)mem = NULL;
1688442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1689442f3b32SStefano Zampini   }
1690aa1993deSMatthew G Knepley   if (dm->workin) {
1691aa1993deSMatthew G Knepley     link       = dm->workin;
1692aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1693aa1993deSMatthew G Knepley   } else {
16944dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1695a89ea682SMatthew G Knepley   }
1696b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1697b77fa653SStefano Zampini      Get size directly */
1698b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1699b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1700b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1701b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1702b77fa653SStefano Zampini #endif
1703b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1704b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1705b77fa653SStefano Zampini #endif
1706b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1707b77fa653SStefano Zampini 
17085056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
17099566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
17109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1711854ce69bSBarry Smith     link->bytes = dsize * count;
1712aa1993deSMatthew G Knepley   }
1713aa1993deSMatthew G Knepley   link->next    = dm->workout;
1714aa1993deSMatthew G Knepley   dm->workout   = link;
1715aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1717a89ea682SMatthew G Knepley }
1718a89ea682SMatthew G Knepley 
1719aa1993deSMatthew G Knepley /*@C
1720bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1721aa1993deSMatthew G Knepley 
1722aa1993deSMatthew G Knepley   Not Collective
1723aa1993deSMatthew G Knepley 
1724aa1993deSMatthew G Knepley   Input Parameters:
1725bb7acecfSBarry Smith + dm    - the `DM` object
1726a5b23f4aSJose E. Roman . count - The minimum size
172720f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1728aa1993deSMatthew G Knepley 
1729aa1993deSMatthew G Knepley   Output Parameter:
173060225df5SJacob Faibussowitsch . mem - the work array
1731aa1993deSMatthew G Knepley 
1732aa1993deSMatthew G Knepley   Level: developer
1733aa1993deSMatthew G Knepley 
173473ff1848SBarry Smith   Developer Note:
1735bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1736147403d9SBarry Smith 
17371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1738aa1993deSMatthew G Knepley @*/
1739d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1740d71ae5a4SJacob Faibussowitsch {
1741aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1742aa1993deSMatthew G Knepley 
1743aa1993deSMatthew G Knepley   PetscFunctionBegin;
1744aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17454f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1746a4e35b19SJacob Faibussowitsch   (void)count;
1747a4e35b19SJacob Faibussowitsch   (void)dtype;
1748442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1749aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1750aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1751aa1993deSMatthew G Knepley       *p            = link->next;
1752aa1993deSMatthew G Knepley       link->next    = dm->workin;
1753aa1993deSMatthew G Knepley       dm->workin    = link;
17540298fd71SBarry Smith       *(void **)mem = NULL;
17553ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1756aa1993deSMatthew G Knepley     }
1757aa1993deSMatthew G Knepley   }
1758aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1759aa1993deSMatthew G Knepley }
1760e7c4fc90SDmitry Karpeev 
17618cda7954SMatthew G. Knepley /*@C
1762bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1763bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17648cda7954SMatthew G. Knepley 
176520f4b53cSBarry Smith   Logically Collective; No Fortran Support
17668cda7954SMatthew G. Knepley 
17678cda7954SMatthew G. Knepley   Input Parameters:
1768bb7acecfSBarry Smith + dm     - The `DM`
17698cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17708cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17718cda7954SMatthew G. Knepley 
177220f4b53cSBarry Smith   Calling sequence of `nullsp`:
1773bb7acecfSBarry Smith + dm        - The present `DM`
1774bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1775147403d9SBarry Smith . field     - The field number in dm
1776147403d9SBarry Smith - nullSpace - The nullspace for the given field
17778cda7954SMatthew G. Knepley 
177849762cbcSSatish Balay   Level: intermediate
177949762cbcSSatish Balay 
17801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1781147403d9SBarry Smith @*/
1782a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1783d71ae5a4SJacob Faibussowitsch {
1784435a35e8SMatthew G Knepley   PetscFunctionBegin;
1785435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17867a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1787435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1789435a35e8SMatthew G Knepley }
1790435a35e8SMatthew G Knepley 
17918cda7954SMatthew G. Knepley /*@C
1792bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17938cda7954SMatthew G. Knepley 
179420f4b53cSBarry Smith   Not Collective; No Fortran Support
17958cda7954SMatthew G. Knepley 
17968cda7954SMatthew G. Knepley   Input Parameters:
1797bb7acecfSBarry Smith + dm    - The `DM`
17988cda7954SMatthew G. Knepley - field - The field number for the nullspace
17998cda7954SMatthew G. Knepley 
18008cda7954SMatthew G. Knepley   Output Parameter:
18018cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
18028cda7954SMatthew G. Knepley 
180320f4b53cSBarry Smith   Calling sequence of `nullsp`:
1804147403d9SBarry Smith + dm        - The present DM
1805147403d9SBarry Smith . origField - The field number given above, in the original DM
1806147403d9SBarry Smith . field     - The field number in dm
1807147403d9SBarry Smith - nullSpace - The nullspace for the given field
18088cda7954SMatthew G. Knepley 
180949762cbcSSatish Balay   Level: intermediate
181049762cbcSSatish Balay 
18111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1812147403d9SBarry Smith @*/
1813a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1814d71ae5a4SJacob Faibussowitsch {
18150a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18160a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18174f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18187a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
18190a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18210a50eb56SMatthew G. Knepley }
18220a50eb56SMatthew G. Knepley 
18238cda7954SMatthew G. Knepley /*@C
1824bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18258cda7954SMatthew G. Knepley 
182620f4b53cSBarry Smith   Logically Collective; No Fortran Support
18278cda7954SMatthew G. Knepley 
18288cda7954SMatthew G. Knepley   Input Parameters:
1829bb7acecfSBarry Smith + dm     - The `DM`
18308cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18318cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18328cda7954SMatthew G. Knepley 
183320f4b53cSBarry Smith   Calling sequence of `nullsp`:
1834bb7acecfSBarry Smith + dm        - The present `DM`
1835bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1836147403d9SBarry Smith . field     - The field number in dm
1837147403d9SBarry Smith - nullSpace - The nullspace for the given field
18388cda7954SMatthew G. Knepley 
183949762cbcSSatish Balay   Level: intermediate
184049762cbcSSatish Balay 
18411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1842bb7acecfSBarry Smith           `MatNullSpace`
1843147403d9SBarry Smith @*/
1844a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1845d71ae5a4SJacob Faibussowitsch {
1846f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1847f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18487a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1849f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1851f9d4088aSMatthew G. Knepley }
1852f9d4088aSMatthew G. Knepley 
18538cda7954SMatthew G. Knepley /*@C
1854bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18558cda7954SMatthew G. Knepley 
185620f4b53cSBarry Smith   Not Collective; No Fortran Support
18578cda7954SMatthew G. Knepley 
18588cda7954SMatthew G. Knepley   Input Parameters:
1859bb7acecfSBarry Smith + dm    - The `DM`
18608cda7954SMatthew G. Knepley - field - The field number for the nullspace
18618cda7954SMatthew G. Knepley 
18628cda7954SMatthew G. Knepley   Output Parameter:
18638cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18648cda7954SMatthew G. Knepley 
186520f4b53cSBarry Smith   Calling sequence of `nullsp`:
1866bb7acecfSBarry Smith + dm        - The present `DM`
1867bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1868147403d9SBarry Smith . field     - The field number in dm
1869147403d9SBarry Smith - nullSpace - The nullspace for the given field
18708cda7954SMatthew G. Knepley 
187149762cbcSSatish Balay   Level: intermediate
187249762cbcSSatish Balay 
18731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1874bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1875147403d9SBarry Smith @*/
1876a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1877d71ae5a4SJacob Faibussowitsch {
1878f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1879f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18804f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
18817a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1882f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1884f9d4088aSMatthew G. Knepley }
1885f9d4088aSMatthew G. Knepley 
18864f3b5142SJed Brown /*@C
1887bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18884d343eeaSMatthew G Knepley 
188920f4b53cSBarry Smith   Not Collective; No Fortran Support
18904d343eeaSMatthew G Knepley 
18914d343eeaSMatthew G Knepley   Input Parameter:
1892bb7acecfSBarry Smith . dm - the `DM` object
18934d343eeaSMatthew G Knepley 
18944d343eeaSMatthew G Knepley   Output Parameters:
189520f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
189620f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested)
189720f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
18984d343eeaSMatthew G Knepley 
18994d343eeaSMatthew G Knepley   Level: intermediate
19004d343eeaSMatthew G Knepley 
1901bb7acecfSBarry Smith   Note:
190273ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
190373ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1904bb7acecfSBarry Smith   `PetscFree()`.
190521c9b008SJed Brown 
190673ff1848SBarry Smith   Developer Note:
1907bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1908bb7acecfSBarry Smith   likely be removed.
1909bb7acecfSBarry Smith 
19101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1911bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
19124d343eeaSMatthew G Knepley @*/
1913d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1914d71ae5a4SJacob Faibussowitsch {
191537d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19164d343eeaSMatthew G Knepley 
19174d343eeaSMatthew G Knepley   PetscFunctionBegin;
19184d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
191969ca1f37SDmitry Karpeev   if (numFields) {
19204f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
192169ca1f37SDmitry Karpeev     *numFields = 0;
192269ca1f37SDmitry Karpeev   }
192337d0c07bSMatthew G Knepley   if (fieldNames) {
19244f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19250298fd71SBarry Smith     *fieldNames = NULL;
192669ca1f37SDmitry Karpeev   }
192769ca1f37SDmitry Karpeev   if (fields) {
19284f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19290298fd71SBarry Smith     *fields = NULL;
193069ca1f37SDmitry Karpeev   }
19319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
193237d0c07bSMatthew G Knepley   if (section) {
19333a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
193437d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
193537d0c07bSMatthew G Knepley 
19369566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19379566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19399566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
194037d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
194137d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19429566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
194337d0c07bSMatthew G Knepley     }
194437d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
194537d0c07bSMatthew G Knepley       PetscInt gdof;
194637d0c07bSMatthew G Knepley 
19479566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
194837d0c07bSMatthew G Knepley       if (gdof > 0) {
194937d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19503a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
195137d0c07bSMatthew G Knepley 
19529566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19539566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19543a544194SStefano Zampini           fpdof = fdof - fcdof;
19553a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19563a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19573a544194SStefano Zampini             fieldNc[f] = 1;
19583a544194SStefano Zampini           }
19593a544194SStefano Zampini           fieldSizes[f] += fpdof;
196037d0c07bSMatthew G Knepley         }
196137d0c07bSMatthew G Knepley       }
196237d0c07bSMatthew G Knepley     }
196337d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19649566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
196537d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
196637d0c07bSMatthew G Knepley     }
196737d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
196837d0c07bSMatthew G Knepley       PetscInt gdof, goff;
196937d0c07bSMatthew G Knepley 
19709566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
197137d0c07bSMatthew G Knepley       if (gdof > 0) {
19729566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
197337d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
197437d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
197537d0c07bSMatthew G Knepley 
19769566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19779566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1978ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
197937d0c07bSMatthew G Knepley         }
198037d0c07bSMatthew G Knepley       }
198137d0c07bSMatthew G Knepley     }
19828865f1eaSKarl Rupp     if (numFields) *numFields = nF;
198337d0c07bSMatthew G Knepley     if (fieldNames) {
19849566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
198537d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
198637d0c07bSMatthew G Knepley         const char *fieldName;
198737d0c07bSMatthew G Knepley 
19889566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1989835f2295SStefano Zampini         PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f]));
199037d0c07bSMatthew G Knepley       }
199137d0c07bSMatthew G Knepley     }
199237d0c07bSMatthew G Knepley     if (fields) {
19939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
199437d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19953a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19963a544194SStefano Zampini 
19979566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
19983a544194SStefano Zampini         in[0] = -fieldNc[f];
19993a544194SStefano Zampini         in[1] = fieldNc[f];
2000462c564dSBarry Smith         PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
20013a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
20029566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
200337d0c07bSMatthew G Knepley       }
200437d0c07bSMatthew G Knepley     }
20059566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
2006dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
20073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20084d343eeaSMatthew G Knepley }
20094d343eeaSMatthew G Knepley 
201016621825SDmitry Karpeev /*@C
2011bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
2012a4e35b19SJacob Faibussowitsch   corresponding to different fields.
2013e7c4fc90SDmitry Karpeev 
201420f4b53cSBarry Smith   Not Collective; No Fortran Support
2015e7c4fc90SDmitry Karpeev 
2016e7c4fc90SDmitry Karpeev   Input Parameter:
2017bb7acecfSBarry Smith . dm - the `DM` object
2018e7c4fc90SDmitry Karpeev 
2019e7c4fc90SDmitry Karpeev   Output Parameters:
202020f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
202120f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
202220f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
202320f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2024e7c4fc90SDmitry Karpeev 
2025e7c4fc90SDmitry Karpeev   Level: intermediate
2026e7c4fc90SDmitry Karpeev 
2027a4e35b19SJacob Faibussowitsch   Notes:
2028a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2029a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2030a4e35b19SJacob Faibussowitsch 
2031a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2032a4e35b19SJacob Faibussowitsch 
203373ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
203473ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2035bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2036e7c4fc90SDmitry Karpeev 
203760225df5SJacob Faibussowitsch   Developer Notes:
2038bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2039bb7acecfSBarry Smith 
204073ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
204173ff1848SBarry Smith   decomposition is computed.
204273ff1848SBarry Smith 
204373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2044e7c4fc90SDmitry Karpeev @*/
2045d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2046d71ae5a4SJacob Faibussowitsch {
2047e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2048e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20498865f1eaSKarl Rupp   if (len) {
20504f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20518865f1eaSKarl Rupp     *len = 0;
20528865f1eaSKarl Rupp   }
20538865f1eaSKarl Rupp   if (namelist) {
20544f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2055ea78f98cSLisandro Dalcin     *namelist = NULL;
20568865f1eaSKarl Rupp   }
20578865f1eaSKarl Rupp   if (islist) {
20584f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2059ea78f98cSLisandro Dalcin     *islist = NULL;
20608865f1eaSKarl Rupp   }
20618865f1eaSKarl Rupp   if (dmlist) {
20624f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2063ea78f98cSLisandro Dalcin     *dmlist = NULL;
20648865f1eaSKarl Rupp   }
2065f3f0edfdSDmitry Karpeev   /*
2066f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2067f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2068f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2069f3f0edfdSDmitry Karpeev    */
20707a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
207116621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2072435a35e8SMatthew G Knepley     PetscSection section;
2073435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2074435a35e8SMatthew G Knepley 
20759566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20769566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2077435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2078f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20799566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20809566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20819566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2082435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2083435a35e8SMatthew G Knepley         const char *fieldName;
2084435a35e8SMatthew G Knepley 
20859566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
208603dc3394SMatthew G. Knepley         if (namelist) {
20879566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2088835f2295SStefano Zampini           PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f]));
2089435a35e8SMatthew G Knepley         }
209003dc3394SMatthew G. Knepley       }
2091435a35e8SMatthew G Knepley     } else {
20929566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2093e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20940298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2095e7c4fc90SDmitry Karpeev     }
2096dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
20973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
209816621825SDmitry Karpeev }
209916621825SDmitry Karpeev 
21005d83a8b1SBarry Smith /*@
210120f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
210220f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2103435a35e8SMatthew G Knepley 
2104435a35e8SMatthew G Knepley   Not collective
2105435a35e8SMatthew G Knepley 
2106435a35e8SMatthew G Knepley   Input Parameters:
2107bb7acecfSBarry Smith + dm        - The `DM` object
2108bb7acecfSBarry Smith . numFields - The number of fields to select
21092adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2110435a35e8SMatthew G Knepley 
2111435a35e8SMatthew G Knepley   Output Parameters:
2112b6971eaeSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed
2113b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed
2114435a35e8SMatthew G Knepley 
211520f4b53cSBarry Smith   Level: intermediate
211620f4b53cSBarry Smith 
2117bb7acecfSBarry Smith   Note:
2118bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21195d3b26e6SMatthew G. Knepley 
212060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2121435a35e8SMatthew G Knepley @*/
2122d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2123d71ae5a4SJacob Faibussowitsch {
2124435a35e8SMatthew G Knepley   PetscFunctionBegin;
2125435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21264f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21274f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21284f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2129dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2131435a35e8SMatthew G Knepley }
2132435a35e8SMatthew G Knepley 
21332adcc780SMatthew G. Knepley /*@C
2134bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21352adcc780SMatthew G. Knepley 
21362adcc780SMatthew G. Knepley   Not collective
21372adcc780SMatthew G. Knepley 
2138d8d19677SJose E. Roman   Input Parameters:
2139bb7acecfSBarry Smith + dms - The `DM` objects
2140bb7acecfSBarry Smith - n   - The number of `DM`s
21412adcc780SMatthew G. Knepley 
21422adcc780SMatthew G. Knepley   Output Parameters:
2143bb7acecfSBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or NULL
2144bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21452adcc780SMatthew G. Knepley 
214620f4b53cSBarry Smith   Level: intermediate
214720f4b53cSBarry Smith 
2148bb7acecfSBarry Smith   Note:
2149bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21505d3b26e6SMatthew G. Knepley 
215173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21522adcc780SMatthew G. Knepley @*/
21535d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm)
2154d71ae5a4SJacob Faibussowitsch {
21552adcc780SMatthew G. Knepley   PetscInt i;
21562adcc780SMatthew G. Knepley 
21572adcc780SMatthew G. Knepley   PetscFunctionBegin;
21584f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2159ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21604f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21614f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2162bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2163bb7acecfSBarry Smith   if (n) {
2164b9d85ea2SLisandro Dalcin     DM dm = dms[0];
216500045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2166dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21672adcc780SMatthew G. Knepley   }
21683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21692adcc780SMatthew G. Knepley }
21702adcc780SMatthew G. Knepley 
217116621825SDmitry Karpeev /*@C
2172a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2173a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
217416621825SDmitry Karpeev 
217520f4b53cSBarry Smith   Not Collective
217616621825SDmitry Karpeev 
217716621825SDmitry Karpeev   Input Parameter:
2178bb7acecfSBarry Smith . dm - the `DM` object
217916621825SDmitry Karpeev 
218016621825SDmitry Karpeev   Output Parameters:
218120f4b53cSBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
218220f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
218373ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
218473ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
218573ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
218616621825SDmitry Karpeev 
218716621825SDmitry Karpeev   Level: intermediate
218816621825SDmitry Karpeev 
218973ff1848SBarry Smith   Notes:
2190a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2191a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2192a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2193a4e35b19SJacob Faibussowitsch 
2194a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2195a4e35b19SJacob Faibussowitsch 
219673ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
219773ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2198bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
219916621825SDmitry Karpeev 
2200a4e35b19SJacob Faibussowitsch   Developer Notes:
220120f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2202bb7acecfSBarry Smith 
220373ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
220473ff1848SBarry Smith 
220573ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
220673ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
220716621825SDmitry Karpeev @*/
2208d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2209d71ae5a4SJacob Faibussowitsch {
2210be081cd6SPeter Brune   DMSubDomainHookLink link;
2211be081cd6SPeter Brune   PetscInt            i, l;
221216621825SDmitry Karpeev 
221316621825SDmitry Karpeev   PetscFunctionBegin;
221416621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22159371c9d4SSatish Balay   if (n) {
22164f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22179371c9d4SSatish Balay     *n = 0;
22189371c9d4SSatish Balay   }
22199371c9d4SSatish Balay   if (namelist) {
22204f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22219371c9d4SSatish Balay     *namelist = NULL;
22229371c9d4SSatish Balay   }
22239371c9d4SSatish Balay   if (innerislist) {
22244f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22259371c9d4SSatish Balay     *innerislist = NULL;
22269371c9d4SSatish Balay   }
22279371c9d4SSatish Balay   if (outerislist) {
22284f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22299371c9d4SSatish Balay     *outerislist = NULL;
22309371c9d4SSatish Balay   }
22319371c9d4SSatish Balay   if (dmlist) {
22324f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22339371c9d4SSatish Balay     *dmlist = NULL;
22349371c9d4SSatish Balay   }
2235f3f0edfdSDmitry Karpeev   /*
2236f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2237f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2238f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2239f3f0edfdSDmitry Karpeev    */
22407a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
224116621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2242dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
224314a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2244f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2245be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2246be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22479566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2248be081cd6SPeter Brune         }
2249648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2250e7c4fc90SDmitry Karpeev       }
225114a18fd3SPeter Brune     }
2252bb7acecfSBarry Smith     if (n) *n = l;
225314a18fd3SPeter Brune   }
22543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2255e30e807fSPeter Brune }
2256e30e807fSPeter Brune 
2257e30e807fSPeter Brune /*@C
225873ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
225973ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2260e30e807fSPeter Brune 
226120f4b53cSBarry Smith   Not Collective
2262e30e807fSPeter Brune 
2263e30e807fSPeter Brune   Input Parameters:
2264bb7acecfSBarry Smith + dm     - the `DM` object
226573ff1848SBarry Smith . n      - the number of subdomains
2266e30e807fSPeter Brune - subdms - the local subdomains
2267e30e807fSPeter Brune 
2268e30e807fSPeter Brune   Output Parameters:
22696b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2270e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2271e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2272e30e807fSPeter Brune 
227320f4b53cSBarry Smith   Level: developer
227420f4b53cSBarry Smith 
2275bb7acecfSBarry Smith   Note:
2276bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2277e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2278e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2279e30e807fSPeter Brune   solution and residual data.
2280e30e807fSPeter Brune 
228173ff1848SBarry Smith   Developer Note:
2282a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2283a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2284bb7acecfSBarry Smith 
22851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2286e30e807fSPeter Brune @*/
22875d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[])
2288d71ae5a4SJacob Faibussowitsch {
2289e30e807fSPeter Brune   PetscFunctionBegin;
2290e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22914f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2292dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2294e7c4fc90SDmitry Karpeev }
2295e7c4fc90SDmitry Karpeev 
229647c6ae99SBarry Smith /*@
2297bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
229847c6ae99SBarry Smith 
229920f4b53cSBarry Smith   Collective
230047c6ae99SBarry Smith 
2301d8d19677SJose E. Roman   Input Parameters:
2302bb7acecfSBarry Smith + dm   - the `DM` object
2303bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
230447c6ae99SBarry Smith 
230547c6ae99SBarry Smith   Output Parameter:
230620f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2307ae0a1c52SMatthew G Knepley 
230820f4b53cSBarry Smith   Options Database Key:
2309412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2310412e9a14SMatthew G. Knepley 
231147c6ae99SBarry Smith   Level: developer
231247c6ae99SBarry Smith 
231320f4b53cSBarry Smith   Note:
231420f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
231520f4b53cSBarry Smith 
231673ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
231773ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
231847c6ae99SBarry Smith @*/
2319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2320d71ae5a4SJacob Faibussowitsch {
2321c833c3b5SJed Brown   DMRefineHookLink link;
232247c6ae99SBarry Smith 
232347c6ae99SBarry Smith   PetscFunctionBegin;
2324732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2326dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23274057135bSMatthew G Knepley   if (*dmf) {
232843842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23298865f1eaSKarl Rupp 
23309566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23318865f1eaSKarl Rupp 
2332644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23330598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2334656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23358865f1eaSKarl Rupp 
23369566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2337c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23381baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2339c833c3b5SJed Brown     }
2340c833c3b5SJed Brown   }
23419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2343c833c3b5SJed Brown }
2344c833c3b5SJed Brown 
2345bb9467b5SJed Brown /*@C
2346c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2347c833c3b5SJed Brown 
234820f4b53cSBarry Smith   Logically Collective; No Fortran Support
2349c833c3b5SJed Brown 
23504165533cSJose E. Roman   Input Parameters:
2351bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2352bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2353f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
235420f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2355c833c3b5SJed Brown 
235620f4b53cSBarry Smith   Calling sequence of `refinehook`:
2357bb7acecfSBarry Smith + coarse - coarse level `DM`
2358bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2359c833c3b5SJed Brown - ctx    - optional user-defined function context
2360c833c3b5SJed Brown 
236120f4b53cSBarry Smith   Calling sequence of `interphook`:
2362bb7acecfSBarry Smith + coarse - coarse level `DM`
2363c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2364bb7acecfSBarry Smith . fine   - fine level `DM` to update
2365c833c3b5SJed Brown - ctx    - optional user-defined function context
2366c833c3b5SJed Brown 
2367c833c3b5SJed Brown   Level: advanced
2368c833c3b5SJed Brown 
2369c833c3b5SJed Brown   Notes:
2370bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2371bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2372bb7acecfSBarry Smith 
2373bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2374c833c3b5SJed Brown 
2375c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2376c833c3b5SJed Brown 
23771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2378c833c3b5SJed Brown @*/
2379a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2380d71ae5a4SJacob Faibussowitsch {
2381c833c3b5SJed Brown   DMRefineHookLink link, *p;
2382c833c3b5SJed Brown 
2383c833c3b5SJed Brown   PetscFunctionBegin;
2384c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23853d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23863ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23873d8e3701SJed Brown   }
23889566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2389c833c3b5SJed Brown   link->refinehook = refinehook;
2390c833c3b5SJed Brown   link->interphook = interphook;
2391c833c3b5SJed Brown   link->ctx        = ctx;
23920298fd71SBarry Smith   link->next       = NULL;
2393c833c3b5SJed Brown   *p               = link;
23943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2395c833c3b5SJed Brown }
2396c833c3b5SJed Brown 
23973d8e3701SJed Brown /*@C
2398bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2399bb7acecfSBarry Smith   a nonlinear problem to a finer grid
24003d8e3701SJed Brown 
240120f4b53cSBarry Smith   Logically Collective; No Fortran Support
24023d8e3701SJed Brown 
24034165533cSJose E. Roman   Input Parameters:
2404bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2405bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2406bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
240720f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
24083d8e3701SJed Brown 
24093d8e3701SJed Brown   Level: advanced
24103d8e3701SJed Brown 
2411bb7acecfSBarry Smith   Note:
24123d8e3701SJed Brown   This function does nothing if the hook is not in the list.
24133d8e3701SJed Brown 
24141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
24153d8e3701SJed Brown @*/
2416d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2417d71ae5a4SJacob Faibussowitsch {
24183d8e3701SJed Brown   DMRefineHookLink link, *p;
24193d8e3701SJed Brown 
24203d8e3701SJed Brown   PetscFunctionBegin;
24213d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24223d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24233d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24243d8e3701SJed Brown       link = *p;
24253d8e3701SJed Brown       *p   = link->next;
24269566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24273d8e3701SJed Brown       break;
24283d8e3701SJed Brown     }
24293d8e3701SJed Brown   }
24303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24313d8e3701SJed Brown }
24323d8e3701SJed Brown 
2433c833c3b5SJed Brown /*@
2434bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2435c833c3b5SJed Brown 
2436c833c3b5SJed Brown   Collective if any hooks are
2437c833c3b5SJed Brown 
24384165533cSJose E. Roman   Input Parameters:
2439bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2440bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2441bb7acecfSBarry Smith - fine   - finer `DM` to update
2442c833c3b5SJed Brown 
2443c833c3b5SJed Brown   Level: developer
2444c833c3b5SJed Brown 
244573ff1848SBarry Smith   Developer Note:
2446bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2447bb7acecfSBarry Smith   an API with consistent terminology.
2448bb7acecfSBarry Smith 
24491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2450c833c3b5SJed Brown @*/
2451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2452d71ae5a4SJacob Faibussowitsch {
2453c833c3b5SJed Brown   DMRefineHookLink link;
2454c833c3b5SJed Brown 
2455c833c3b5SJed Brown   PetscFunctionBegin;
2456c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24571baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24584057135bSMatthew G Knepley   }
24593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
246047c6ae99SBarry Smith }
246147c6ae99SBarry Smith 
2462eb3f98d2SBarry Smith /*@
24631f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24641f3379b2SToby Isaac 
246520f4b53cSBarry Smith   Collective
24661f3379b2SToby Isaac 
24674165533cSJose E. Roman   Input Parameters:
2468bb7acecfSBarry Smith + coarse    - coarse `DM`
2469bb7acecfSBarry Smith . fine      - fine `DM`
2470bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2471bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2472bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24731f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24741f3379b2SToby Isaac 
24754165533cSJose E. Roman   Output Parameter:
24761f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24771f3379b2SToby Isaac 
24781f3379b2SToby Isaac   Level: developer
24791f3379b2SToby Isaac 
2480bb7acecfSBarry Smith   Note:
2481bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24821f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24831f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24841f3379b2SToby Isaac   slope-limiting reconstruction.
24851f3379b2SToby Isaac 
248673ff1848SBarry Smith   Developer Note:
2487bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2488bb7acecfSBarry Smith 
24891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24901f3379b2SToby Isaac @*/
2491d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2492d71ae5a4SJacob Faibussowitsch {
24931f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24941f3379b2SToby Isaac 
24951f3379b2SToby Isaac   PetscFunctionBegin;
24961f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24971f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
24981f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
24991f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
25001f3379b2SToby Isaac 
25019566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
25021f3379b2SToby Isaac   if (interpsol) {
25039566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
25041f3379b2SToby Isaac   } else if (interp) {
25059566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
250698921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
25073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25081f3379b2SToby Isaac }
25091f3379b2SToby Isaac 
25101f3379b2SToby Isaac /*@
2511bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2512eb3f98d2SBarry Smith 
2513eb3f98d2SBarry Smith   Not Collective
2514eb3f98d2SBarry Smith 
2515eb3f98d2SBarry Smith   Input Parameter:
2516bb7acecfSBarry Smith . dm - the `DM` object
2517eb3f98d2SBarry Smith 
2518eb3f98d2SBarry Smith   Output Parameter:
2519eb3f98d2SBarry Smith . level - number of refinements
2520eb3f98d2SBarry Smith 
2521eb3f98d2SBarry Smith   Level: developer
2522eb3f98d2SBarry Smith 
2523bb7acecfSBarry Smith   Note:
2524bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2525bb7acecfSBarry Smith 
25261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2527eb3f98d2SBarry Smith @*/
2528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2529d71ae5a4SJacob Faibussowitsch {
2530eb3f98d2SBarry Smith   PetscFunctionBegin;
2531eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2532eb3f98d2SBarry Smith   *level = dm->levelup;
25333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2534eb3f98d2SBarry Smith }
2535eb3f98d2SBarry Smith 
2536fef3a512SBarry Smith /*@
2537bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2538fef3a512SBarry Smith 
2539fef3a512SBarry Smith   Not Collective
2540fef3a512SBarry Smith 
2541d8d19677SJose E. Roman   Input Parameters:
2542bb7acecfSBarry Smith + dm    - the `DM` object
2543fef3a512SBarry Smith - level - number of refinements
2544fef3a512SBarry Smith 
2545fef3a512SBarry Smith   Level: advanced
2546fef3a512SBarry Smith 
254795452b02SPatrick Sanan   Notes:
2548bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2549fef3a512SBarry Smith 
2550bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2551bb7acecfSBarry Smith 
25521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2553fef3a512SBarry Smith @*/
2554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2555d71ae5a4SJacob Faibussowitsch {
2556fef3a512SBarry Smith   PetscFunctionBegin;
2557fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2558fef3a512SBarry Smith   dm->levelup = level;
25593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2560fef3a512SBarry Smith }
2561fef3a512SBarry Smith 
2562d410b0cfSMatthew G. Knepley /*@
2563bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2564d410b0cfSMatthew G. Knepley 
256520f4b53cSBarry Smith   Collective
2566d410b0cfSMatthew G. Knepley 
2567f1a722f8SMatthew G. Knepley   Input Parameters:
2568bb7acecfSBarry Smith + dm     - the `DM` object
2569d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2570d410b0cfSMatthew G. Knepley 
2571d410b0cfSMatthew G. Knepley   Output Parameter:
257220f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2573d410b0cfSMatthew G. Knepley 
2574d410b0cfSMatthew G. Knepley   Level: developer
2575d410b0cfSMatthew G. Knepley 
257620f4b53cSBarry Smith   Note:
257720f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
257820f4b53cSBarry Smith 
25791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2580d410b0cfSMatthew G. Knepley @*/
2581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2582d71ae5a4SJacob Faibussowitsch {
2583d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2584d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2585dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2586d410b0cfSMatthew G. Knepley   if (*dme) {
2587d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25889566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2589d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25909566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2591d410b0cfSMatthew G. Knepley   }
25923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2593d410b0cfSMatthew G. Knepley }
2594d410b0cfSMatthew G. Knepley 
2595d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2596d71ae5a4SJacob Faibussowitsch {
2597ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2598ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
25994f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2600ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
26013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2602ca3d3a14SMatthew G. Knepley }
2603ca3d3a14SMatthew G. Knepley 
2604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2605d71ae5a4SJacob Faibussowitsch {
2606ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2607ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26084f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2609ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
26103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2611ca3d3a14SMatthew G. Knepley }
2612ca3d3a14SMatthew G. Knepley 
2613ca3d3a14SMatthew G. Knepley /*@
2614bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2615ca3d3a14SMatthew G. Knepley 
2616ca3d3a14SMatthew G. Knepley   Input Parameter:
261720f4b53cSBarry Smith . dm - The `DM`
2618ca3d3a14SMatthew G. Knepley 
2619ca3d3a14SMatthew G. Knepley   Output Parameter:
262020f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2621ca3d3a14SMatthew G. Knepley 
2622ca3d3a14SMatthew G. Knepley   Level: developer
2623ca3d3a14SMatthew G. Knepley 
26241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2625ca3d3a14SMatthew G. Knepley @*/
2626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2627d71ae5a4SJacob Faibussowitsch {
2628ca3d3a14SMatthew G. Knepley   Vec tv;
2629ca3d3a14SMatthew G. Knepley 
2630ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2631ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26324f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26339566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2634ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2636ca3d3a14SMatthew G. Knepley }
2637ca3d3a14SMatthew G. Knepley 
2638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2639d71ae5a4SJacob Faibussowitsch {
2640ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2641ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2642ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2643ca3d3a14SMatthew G. Knepley 
2644ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26459566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26469566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26479566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26489566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26499566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26509566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26519566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26529566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2653ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26549566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2655ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2656ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2657ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26589566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2659ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26609566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26619566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2662ca3d3a14SMatthew G. Knepley     }
2663ca3d3a14SMatthew G. Knepley   }
26649566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26659566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26669566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2667ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2668ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26699566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2670ca3d3a14SMatthew G. Knepley       if (dof) {
2671ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2672ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2673ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2674ca3d3a14SMatthew G. Knepley 
2675ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26769566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26779566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26789566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2679ca3d3a14SMatthew G. Knepley       }
2680ca3d3a14SMatthew G. Knepley     }
2681ca3d3a14SMatthew G. Knepley   }
26829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2684ca3d3a14SMatthew G. Knepley }
2685ca3d3a14SMatthew G. Knepley 
2686d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2687d71ae5a4SJacob Faibussowitsch {
2688ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2689ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2690ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2691ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2692ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2693ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2694ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26959566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
26963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2697ca3d3a14SMatthew G. Knepley }
2698ca3d3a14SMatthew G. Knepley 
2699bb9467b5SJed Brown /*@C
2700bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2701baf369e7SPeter Brune 
270220f4b53cSBarry Smith   Logically Collective
2703baf369e7SPeter Brune 
27044165533cSJose E. Roman   Input Parameters:
2705bb7acecfSBarry Smith + dm        - the `DM`
2706bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2707bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
270820f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2709baf369e7SPeter Brune 
271020f4b53cSBarry Smith   Calling sequence of `beginhook`:
2711a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2712baf369e7SPeter Brune . g    - global vector
2713baf369e7SPeter Brune . mode - mode
2714baf369e7SPeter Brune . l    - local vector
2715baf369e7SPeter Brune - ctx  - optional user-defined function context
2716baf369e7SPeter Brune 
271720f4b53cSBarry Smith   Calling sequence of `endhook`:
2718a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2719a4e35b19SJacob Faibussowitsch . g    - global vector
2720a4e35b19SJacob Faibussowitsch . mode - mode
2721a4e35b19SJacob Faibussowitsch . l    - local vector
2722baf369e7SPeter Brune - ctx  - optional user-defined function context
2723baf369e7SPeter Brune 
2724baf369e7SPeter Brune   Level: advanced
2725baf369e7SPeter Brune 
2726bb7acecfSBarry Smith   Note:
2727bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2728bb7acecfSBarry Smith 
27291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2730baf369e7SPeter Brune @*/
2731a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2732d71ae5a4SJacob Faibussowitsch {
2733baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2734baf369e7SPeter Brune 
2735baf369e7SPeter Brune   PetscFunctionBegin;
2736baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2737baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27389566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2739baf369e7SPeter Brune   link->beginhook = beginhook;
2740baf369e7SPeter Brune   link->endhook   = endhook;
2741baf369e7SPeter Brune   link->ctx       = ctx;
27420298fd71SBarry Smith   link->next      = NULL;
2743baf369e7SPeter Brune   *p              = link;
27443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2745baf369e7SPeter Brune }
2746baf369e7SPeter Brune 
2747d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2748d71ae5a4SJacob Faibussowitsch {
27494c274da1SToby Isaac   Mat          cMat;
275079769bd5SJed Brown   Vec          cVec, cBias;
27514c274da1SToby Isaac   PetscSection section, cSec;
27524c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27534c274da1SToby Isaac 
27544c274da1SToby Isaac   PetscFunctionBegin;
2755a4e35b19SJacob Faibussowitsch   (void)g;
2756a4e35b19SJacob Faibussowitsch   (void)ctx;
27574c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27589566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27594c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27605db9a05bSToby Isaac     PetscInt nRows;
27615db9a05bSToby Isaac 
27629566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27633ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27649566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27659566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27669566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27679566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27689566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27694c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27709566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27714c274da1SToby Isaac       if (dof) {
27724c274da1SToby Isaac         PetscScalar *vals;
27739566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27749566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27754c274da1SToby Isaac       }
27764c274da1SToby Isaac     }
27779566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27784c274da1SToby Isaac   }
27793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27804c274da1SToby Isaac }
27814c274da1SToby Isaac 
278247c6ae99SBarry Smith /*@
278301729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
278401729b5cSPatrick Sanan 
278520f4b53cSBarry Smith   Neighbor-wise Collective
278601729b5cSPatrick Sanan 
278701729b5cSPatrick Sanan   Input Parameters:
2788bb7acecfSBarry Smith + dm   - the `DM` object
278901729b5cSPatrick Sanan . g    - the global vector
2790bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
279101729b5cSPatrick Sanan - l    - the local vector
279201729b5cSPatrick Sanan 
279320f4b53cSBarry Smith   Level: beginner
279420f4b53cSBarry Smith 
279501729b5cSPatrick Sanan   Notes:
2796bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2797bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2798bb7acecfSBarry Smith 
2799bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
280001729b5cSPatrick Sanan 
28011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
280260225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2803bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
280401729b5cSPatrick Sanan @*/
2805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2806d71ae5a4SJacob Faibussowitsch {
280701729b5cSPatrick Sanan   PetscFunctionBegin;
28089566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
28099566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
28103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
281101729b5cSPatrick Sanan }
281201729b5cSPatrick Sanan 
281301729b5cSPatrick Sanan /*@
281447c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
281547c6ae99SBarry Smith 
281620f4b53cSBarry Smith   Neighbor-wise Collective
281747c6ae99SBarry Smith 
281847c6ae99SBarry Smith   Input Parameters:
2819bb7acecfSBarry Smith + dm   - the `DM` object
282047c6ae99SBarry Smith . g    - the global vector
2821bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
282247c6ae99SBarry Smith - l    - the local vector
282347c6ae99SBarry Smith 
282401729b5cSPatrick Sanan   Level: intermediate
282547c6ae99SBarry Smith 
2826bb7acecfSBarry Smith   Notes:
2827bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2828bb7acecfSBarry Smith 
2829bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2830bb7acecfSBarry Smith 
2831bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2832bb7acecfSBarry Smith 
2833bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2834bb7acecfSBarry Smith 
283560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
283647c6ae99SBarry Smith @*/
2837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2838d71ae5a4SJacob Faibussowitsch {
28397128ae9fSMatthew G Knepley   PetscSF                 sf;
2840baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
284147c6ae99SBarry Smith 
284247c6ae99SBarry Smith   PetscFunctionBegin;
2843171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2844baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28451baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2846baf369e7SPeter Brune   }
28479566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28487128ae9fSMatthew G Knepley   if (sf) {
2849ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2850ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2851d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28527128ae9fSMatthew G Knepley 
28537a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28549566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28559566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28569566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28589566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28597128ae9fSMatthew G Knepley   } else {
2860fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28617128ae9fSMatthew G Knepley   }
28623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286347c6ae99SBarry Smith }
286447c6ae99SBarry Smith 
286547c6ae99SBarry Smith /*@
286647c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
286747c6ae99SBarry Smith 
286820f4b53cSBarry Smith   Neighbor-wise Collective
286947c6ae99SBarry Smith 
287047c6ae99SBarry Smith   Input Parameters:
2871bb7acecfSBarry Smith + dm   - the `DM` object
287247c6ae99SBarry Smith . g    - the global vector
2873bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
287447c6ae99SBarry Smith - l    - the local vector
287547c6ae99SBarry Smith 
287601729b5cSPatrick Sanan   Level: intermediate
287747c6ae99SBarry Smith 
2878bb7acecfSBarry Smith   Note:
2879bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2880bb7acecfSBarry Smith 
288160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
288247c6ae99SBarry Smith @*/
2883d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2884d71ae5a4SJacob Faibussowitsch {
28857128ae9fSMatthew G Knepley   PetscSF                 sf;
2886ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2887ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2888ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2889baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2890d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
289147c6ae99SBarry Smith 
289247c6ae99SBarry Smith   PetscFunctionBegin;
2893171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28949566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28959566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28967128ae9fSMatthew G Knepley   if (sf) {
28977a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28987128ae9fSMatthew G Knepley 
28999566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
29009566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
29019566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
29029566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
29039566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
29049566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
29057128ae9fSMatthew G Knepley   } else {
2906fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
29077128ae9fSMatthew G Knepley   }
29089566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2909baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
29109566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2911baf369e7SPeter Brune   }
29123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
291347c6ae99SBarry Smith }
291447c6ae99SBarry Smith 
2915d4d07f1eSToby Isaac /*@C
2916d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2917d4d07f1eSToby Isaac 
291820f4b53cSBarry Smith   Logically Collective
2919d4d07f1eSToby Isaac 
29204165533cSJose E. Roman   Input Parameters:
2921bb7acecfSBarry Smith + dm        - the `DM`
2922bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2923bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
292420f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2925d4d07f1eSToby Isaac 
292620f4b53cSBarry Smith   Calling sequence of `beginhook`:
2927a4e35b19SJacob Faibussowitsch + global - global `DM`
2928d4d07f1eSToby Isaac . l      - local vector
2929d4d07f1eSToby Isaac . mode   - mode
2930d4d07f1eSToby Isaac . g      - global vector
2931d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2932d4d07f1eSToby Isaac 
293320f4b53cSBarry Smith   Calling sequence of `endhook`:
2934bb7acecfSBarry Smith + global - global `DM`
2935d4d07f1eSToby Isaac . l      - local vector
2936d4d07f1eSToby Isaac . mode   - mode
2937d4d07f1eSToby Isaac . g      - global vector
2938d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2939d4d07f1eSToby Isaac 
2940d4d07f1eSToby Isaac   Level: advanced
2941d4d07f1eSToby Isaac 
29421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2943d4d07f1eSToby Isaac @*/
2944a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2945d71ae5a4SJacob Faibussowitsch {
2946d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2947d4d07f1eSToby Isaac 
2948d4d07f1eSToby Isaac   PetscFunctionBegin;
2949d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2950d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29519566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2952d4d07f1eSToby Isaac   link->beginhook = beginhook;
2953d4d07f1eSToby Isaac   link->endhook   = endhook;
2954d4d07f1eSToby Isaac   link->ctx       = ctx;
2955d4d07f1eSToby Isaac   link->next      = NULL;
2956d4d07f1eSToby Isaac   *p              = link;
29573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2958d4d07f1eSToby Isaac }
2959d4d07f1eSToby Isaac 
2960d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2961d71ae5a4SJacob Faibussowitsch {
29624c274da1SToby Isaac   PetscFunctionBegin;
2963a4e35b19SJacob Faibussowitsch   (void)g;
2964a4e35b19SJacob Faibussowitsch   (void)ctx;
29654c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29662b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29672b6b7d09SToby Isaac     Mat          cMat;
29682b6b7d09SToby Isaac     Vec          cVec;
29695db9a05bSToby Isaac     PetscInt     nRows;
29702b6b7d09SToby Isaac     PetscSection section, cSec;
29712b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29722b6b7d09SToby Isaac 
29732b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29742b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29755db9a05bSToby Isaac 
29769566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29773ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29789566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29799566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29809566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29814c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29829566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29834c274da1SToby Isaac       if (dof) {
29844c274da1SToby Isaac         PetscInt     d;
29854c274da1SToby Isaac         PetscScalar *vals;
29869566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29879566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29884c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29894c274da1SToby Isaac          * we just extracted */
2990ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29914c274da1SToby Isaac       }
29924c274da1SToby Isaac     }
29939566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29949566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29954c274da1SToby Isaac   }
29963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29974c274da1SToby Isaac }
299801729b5cSPatrick Sanan /*@
299901729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
300001729b5cSPatrick Sanan 
300120f4b53cSBarry Smith   Neighbor-wise Collective
300201729b5cSPatrick Sanan 
300301729b5cSPatrick Sanan   Input Parameters:
3004bb7acecfSBarry Smith + dm   - the `DM` object
300501729b5cSPatrick Sanan . l    - the local vector
3006bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
300701729b5cSPatrick Sanan - g    - the global vector
300801729b5cSPatrick Sanan 
300920f4b53cSBarry Smith   Level: beginner
301020f4b53cSBarry Smith 
301101729b5cSPatrick Sanan   Notes:
301201729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
3013bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
301401729b5cSPatrick Sanan 
3015bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3016bb7acecfSBarry Smith 
3017bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3018bb7acecfSBarry Smith 
3019bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
302001729b5cSPatrick Sanan 
30211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
302201729b5cSPatrick Sanan @*/
3023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3024d71ae5a4SJacob Faibussowitsch {
302501729b5cSPatrick Sanan   PetscFunctionBegin;
30269566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30279566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
302901729b5cSPatrick Sanan }
30304c274da1SToby Isaac 
303147c6ae99SBarry Smith /*@
303201729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30339a42bb27SBarry Smith 
303420f4b53cSBarry Smith   Neighbor-wise Collective
30359a42bb27SBarry Smith 
30369a42bb27SBarry Smith   Input Parameters:
3037bb7acecfSBarry Smith + dm   - the `DM` object
3038f6813fd5SJed Brown . l    - the local vector
3039aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30401eb28f2eSBarry Smith - g    - the global vector
30419a42bb27SBarry Smith 
304220f4b53cSBarry Smith   Level: intermediate
304320f4b53cSBarry Smith 
304495452b02SPatrick Sanan   Notes:
3045bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3046bb7acecfSBarry Smith 
3047bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3048bb7acecfSBarry Smith 
3049bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3050bb7acecfSBarry Smith 
3051bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3052bb7acecfSBarry Smith 
3053bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30549a42bb27SBarry Smith 
30551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30569a42bb27SBarry Smith @*/
3057d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3058d71ae5a4SJacob Faibussowitsch {
30597128ae9fSMatthew G Knepley   PetscSF                 sf;
306084330215SMatthew G. Knepley   PetscSection            s, gs;
3061d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3062ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3063ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3064ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3065fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3066d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30679a42bb27SBarry Smith 
30689a42bb27SBarry Smith   PetscFunctionBegin;
3069171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3070d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30711baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3072d4d07f1eSToby Isaac   }
30739566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30749566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30759566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30767128ae9fSMatthew G Knepley   switch (mode) {
30777128ae9fSMatthew G Knepley   case INSERT_VALUES:
30787128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3079d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3080d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3081d71ae5a4SJacob Faibussowitsch     break;
30827128ae9fSMatthew G Knepley   case ADD_VALUES:
30837128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3084d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3085d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3086d71ae5a4SJacob Faibussowitsch     break;
3087d71ae5a4SJacob Faibussowitsch   default:
3088d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30897128ae9fSMatthew G Knepley   }
3090ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30919566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3092ca3d3a14SMatthew G. Knepley     if (transform) {
30939566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30949566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30959566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30969566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3097fa88e482SJed Brown     } else if (isInsert) {
30989566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3099fa88e482SJed Brown     } else {
31009566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3101fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3102ca3d3a14SMatthew G. Knepley     }
3103fa88e482SJed Brown     if (s && isInsert) {
31049566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3105fa88e482SJed Brown     } else {
31069566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3107fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3108fa88e482SJed Brown     }
3109ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
31109566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
311184330215SMatthew G. Knepley     } else if (s && isInsert) {
311284330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
311384330215SMatthew G. Knepley 
31149566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
31159566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31169566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
311784330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3118b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
311984330215SMatthew G. Knepley 
31209566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31219566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31229566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31239566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31249566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31259566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3126b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
312703442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31287a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3129b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3130b3b16f48SMatthew G. Knepley         if (!gcdof) {
313184330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3132b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3133b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
313484330215SMatthew G. Knepley           const PetscInt *cdofs;
313584330215SMatthew G. Knepley           PetscInt        cind = 0;
313684330215SMatthew G. Knepley 
31379566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3138b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31399371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31409371c9d4SSatish Balay               ++cind;
31419371c9d4SSatish Balay               continue;
31429371c9d4SSatish Balay             }
3143b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
314484330215SMatthew G. Knepley           }
31457a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
314684330215SMatthew G. Knepley       }
3147ca3d3a14SMatthew G. Knepley     }
3148fa88e482SJed Brown     if (g_inplace) {
31499566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3150fa88e482SJed Brown     } else {
31519566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3152fa88e482SJed Brown     }
3153ca3d3a14SMatthew G. Knepley     if (transform) {
31549566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31559566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3156fa88e482SJed Brown     } else if (l_inplace) {
31579566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3158ca3d3a14SMatthew G. Knepley     } else {
31599566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3160ca3d3a14SMatthew G. Knepley     }
31617128ae9fSMatthew G Knepley   } else {
3162fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31637128ae9fSMatthew G Knepley   }
31643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31659a42bb27SBarry Smith }
31669a42bb27SBarry Smith 
31679a42bb27SBarry Smith /*@
31689a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
316947c6ae99SBarry Smith 
317020f4b53cSBarry Smith   Neighbor-wise Collective
317147c6ae99SBarry Smith 
317247c6ae99SBarry Smith   Input Parameters:
3173bb7acecfSBarry Smith + dm   - the `DM` object
3174f6813fd5SJed Brown . l    - the local vector
3175bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3176f6813fd5SJed Brown - g    - the global vector
317747c6ae99SBarry Smith 
317801729b5cSPatrick Sanan   Level: intermediate
317947c6ae99SBarry Smith 
3180bb7acecfSBarry Smith   Note:
3181bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3182bb7acecfSBarry Smith 
318360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
318447c6ae99SBarry Smith @*/
3185d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3186d71ae5a4SJacob Faibussowitsch {
31877128ae9fSMatthew G Knepley   PetscSF                 sf;
318884330215SMatthew G. Knepley   PetscSection            s;
3189d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3190ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
319147c6ae99SBarry Smith 
319247c6ae99SBarry Smith   PetscFunctionBegin;
3193171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31949566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31959566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31967128ae9fSMatthew G Knepley   switch (mode) {
31977128ae9fSMatthew G Knepley   case INSERT_VALUES:
3198d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3199d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3200d71ae5a4SJacob Faibussowitsch     break;
32017128ae9fSMatthew G Knepley   case ADD_VALUES:
3202d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3203d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3204d71ae5a4SJacob Faibussowitsch     break;
3205d71ae5a4SJacob Faibussowitsch   default:
3206d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
32077128ae9fSMatthew G Knepley   }
320884330215SMatthew G. Knepley   if (sf && !isInsert) {
3209ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3210ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3211ca3d3a14SMatthew G. Knepley     Vec                tmpl;
321284330215SMatthew G. Knepley 
32139566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3214ca3d3a14SMatthew G. Knepley     if (transform) {
32159566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32169566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3217ca3d3a14SMatthew G. Knepley     } else {
32189566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3219ca3d3a14SMatthew G. Knepley     }
32209566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32219566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3222ca3d3a14SMatthew G. Knepley     if (transform) {
32239566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32249566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3225ca3d3a14SMatthew G. Knepley     } else {
32269566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3227ca3d3a14SMatthew G. Knepley     }
32289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
322984330215SMatthew G. Knepley   } else if (s && isInsert) {
32307128ae9fSMatthew G Knepley   } else {
3231fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32327128ae9fSMatthew G Knepley   }
3233d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32349566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3235d4d07f1eSToby Isaac   }
32363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
323747c6ae99SBarry Smith }
323847c6ae99SBarry Smith 
3239f089877aSRichard Tran Mills /*@
3240a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3241a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3242a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3243f089877aSRichard Tran Mills 
324420f4b53cSBarry Smith   Neighbor-wise Collective
3245f089877aSRichard Tran Mills 
3246f089877aSRichard Tran Mills   Input Parameters:
3247bb7acecfSBarry Smith + dm   - the `DM` object
3248bc0a1609SRichard Tran Mills . g    - the original local vector
3249bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3250f089877aSRichard Tran Mills 
3251bc0a1609SRichard Tran Mills   Output Parameter:
3252bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3253f089877aSRichard Tran Mills 
3254f089877aSRichard Tran Mills   Level: intermediate
3255f089877aSRichard Tran Mills 
325673ff1848SBarry Smith   Note:
3257a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3258a4e35b19SJacob Faibussowitsch 
325960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3260f089877aSRichard Tran Mills @*/
3261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3262d71ae5a4SJacob Faibussowitsch {
3263f089877aSRichard Tran Mills   PetscFunctionBegin;
3264f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32659f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32669f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32679f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3269f089877aSRichard Tran Mills }
3270f089877aSRichard Tran Mills 
3271f089877aSRichard Tran Mills /*@
3272bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3273bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3274f089877aSRichard Tran Mills 
327520f4b53cSBarry Smith   Neighbor-wise Collective
3276f089877aSRichard Tran Mills 
3277f089877aSRichard Tran Mills   Input Parameters:
327860225df5SJacob Faibussowitsch + dm   - the `DM` object
3279bc0a1609SRichard Tran Mills . g    - the original local vector
3280bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3281f089877aSRichard Tran Mills 
3282bc0a1609SRichard Tran Mills   Output Parameter:
3283bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3284f089877aSRichard Tran Mills 
3285f089877aSRichard Tran Mills   Level: intermediate
3286f089877aSRichard Tran Mills 
328760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3288f089877aSRichard Tran Mills @*/
3289d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3290d71ae5a4SJacob Faibussowitsch {
3291f089877aSRichard Tran Mills   PetscFunctionBegin;
3292f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32939f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32949f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32959f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3297f089877aSRichard Tran Mills }
3298f089877aSRichard Tran Mills 
329947c6ae99SBarry Smith /*@
3300bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
330147c6ae99SBarry Smith 
330220f4b53cSBarry Smith   Collective
330347c6ae99SBarry Smith 
3304d8d19677SJose E. Roman   Input Parameters:
3305bb7acecfSBarry Smith + dm   - the `DM` object
330620f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
330747c6ae99SBarry Smith 
330847c6ae99SBarry Smith   Output Parameter:
3309bb7acecfSBarry Smith . dmc - the coarsened `DM`
331047c6ae99SBarry Smith 
331147c6ae99SBarry Smith   Level: developer
331247c6ae99SBarry Smith 
331373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
331473ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
331547c6ae99SBarry Smith @*/
3316d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3317d71ae5a4SJacob Faibussowitsch {
3318b17ce1afSJed Brown   DMCoarsenHookLink link;
331947c6ae99SBarry Smith 
332047c6ae99SBarry Smith   PetscFunctionBegin;
3321171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3323dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3324b9d85ea2SLisandro Dalcin   if (*dmc) {
3325a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33269566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
332743842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33289566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3329644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33300598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3331656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33329566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3333b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33349566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3335b17ce1afSJed Brown     }
3336b9d85ea2SLisandro Dalcin   }
33379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33387a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3340b17ce1afSJed Brown }
3341b17ce1afSJed Brown 
3342bb9467b5SJed Brown /*@C
3343b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3344b17ce1afSJed Brown 
334520f4b53cSBarry Smith   Logically Collective; No Fortran Support
3346b17ce1afSJed Brown 
33474165533cSJose E. Roman   Input Parameters:
3348bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3349b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3350bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
335120f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3352b17ce1afSJed Brown 
335320f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3354bb7acecfSBarry Smith + fine   - fine level `DM`
3355bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3356b17ce1afSJed Brown - ctx    - optional user-defined function context
3357b17ce1afSJed Brown 
335820f4b53cSBarry Smith   Calling sequence of `restricthook`:
3359bb7acecfSBarry Smith + fine      - fine level `DM`
3360bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3361c833c3b5SJed Brown . rscale    - scaling vector for restriction
3362c833c3b5SJed Brown . inject    - matrix restricting by injection
3363b17ce1afSJed Brown . coarse    - coarse level DM to update
3364b17ce1afSJed Brown - ctx       - optional user-defined function context
3365b17ce1afSJed Brown 
3366b17ce1afSJed Brown   Level: advanced
3367b17ce1afSJed Brown 
3368b17ce1afSJed Brown   Notes:
3369bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3370b17ce1afSJed Brown 
3371b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3372b17ce1afSJed Brown 
3373b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3374bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3375b17ce1afSJed Brown 
3376bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3377bb7acecfSBarry Smith 
33781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3379b17ce1afSJed Brown @*/
3380a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3381d71ae5a4SJacob Faibussowitsch {
3382b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3383b17ce1afSJed Brown 
3384b17ce1afSJed Brown   PetscFunctionBegin;
3385b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33861e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33873ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33881e3d8eccSJed Brown   }
33899566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3390b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3391b17ce1afSJed Brown   link->restricthook = restricthook;
3392b17ce1afSJed Brown   link->ctx          = ctx;
33930298fd71SBarry Smith   link->next         = NULL;
3394b17ce1afSJed Brown   *p                 = link;
33953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3396b17ce1afSJed Brown }
3397b17ce1afSJed Brown 
3398dc822a44SJed Brown /*@C
3399bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3400dc822a44SJed Brown 
340120f4b53cSBarry Smith   Logically Collective; No Fortran Support
3402dc822a44SJed Brown 
34034165533cSJose E. Roman   Input Parameters:
3404bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3405dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3406bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
340720f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3408dc822a44SJed Brown 
3409dc822a44SJed Brown   Level: advanced
3410dc822a44SJed Brown 
341173ff1848SBarry Smith   Notes:
341273ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
341373ff1848SBarry Smith 
341473ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3415dc822a44SJed Brown 
34161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3417dc822a44SJed Brown @*/
3418d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3419d71ae5a4SJacob Faibussowitsch {
3420dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3421dc822a44SJed Brown 
3422dc822a44SJed Brown   PetscFunctionBegin;
3423dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3424dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3425dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3426dc822a44SJed Brown       link = *p;
3427dc822a44SJed Brown       *p   = link->next;
34289566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3429dc822a44SJed Brown       break;
3430dc822a44SJed Brown     }
3431dc822a44SJed Brown   }
34323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3433dc822a44SJed Brown }
3434dc822a44SJed Brown 
3435b17ce1afSJed Brown /*@
3436bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3437b17ce1afSJed Brown 
3438b17ce1afSJed Brown   Collective if any hooks are
3439b17ce1afSJed Brown 
34404165533cSJose E. Roman   Input Parameters:
3441bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3442bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3443e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3444bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
344520f4b53cSBarry Smith - coarse  - coarser `DM` to update
3446b17ce1afSJed Brown 
3447b17ce1afSJed Brown   Level: developer
3448b17ce1afSJed Brown 
344973ff1848SBarry Smith   Developer Note:
3450bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3451bb7acecfSBarry Smith 
34521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3453b17ce1afSJed Brown @*/
3454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3455d71ae5a4SJacob Faibussowitsch {
3456b17ce1afSJed Brown   DMCoarsenHookLink link;
3457b17ce1afSJed Brown 
3458b17ce1afSJed Brown   PetscFunctionBegin;
3459b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34601baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3461b17ce1afSJed Brown   }
34623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
346347c6ae99SBarry Smith }
346447c6ae99SBarry Smith 
3465bb9467b5SJed Brown /*@C
346673ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34675dbd56e3SPeter Brune 
346820f4b53cSBarry Smith   Logically Collective; No Fortran Support
34695dbd56e3SPeter Brune 
34704165533cSJose E. Roman   Input Parameters:
3471bb7acecfSBarry Smith + global       - global `DM`
3472bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34735dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
347420f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34755dbd56e3SPeter Brune 
347620f4b53cSBarry Smith   Calling sequence of `ddhook`:
3477bb7acecfSBarry Smith + global - global `DM`
347873ff1848SBarry Smith . block  - subdomain `DM`
3479ec4806b8SPeter Brune - ctx    - optional user-defined function context
3480ec4806b8SPeter Brune 
348120f4b53cSBarry Smith   Calling sequence of `restricthook`:
3482bb7acecfSBarry Smith + global - global `DM`
348373ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
348473ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
348573ff1848SBarry Smith . block  - subdomain `DM`
34865dbd56e3SPeter Brune - ctx    - optional user-defined function context
34875dbd56e3SPeter Brune 
34885dbd56e3SPeter Brune   Level: advanced
34895dbd56e3SPeter Brune 
34905dbd56e3SPeter Brune   Notes:
349173ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
34925dbd56e3SPeter Brune 
34935dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
34945dbd56e3SPeter Brune 
34955dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3496bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
34975dbd56e3SPeter Brune 
349873ff1848SBarry Smith   Developer Note:
349973ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
350073ff1848SBarry Smith 
350173ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
35025dbd56e3SPeter Brune @*/
3503a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3504d71ae5a4SJacob Faibussowitsch {
3505be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
35065dbd56e3SPeter Brune 
35075dbd56e3SPeter Brune   PetscFunctionBegin;
35085dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3509b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
35103ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3511b3a6b972SJed Brown   }
35129566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
35135dbd56e3SPeter Brune   link->restricthook = restricthook;
3514be081cd6SPeter Brune   link->ddhook       = ddhook;
35155dbd56e3SPeter Brune   link->ctx          = ctx;
35160298fd71SBarry Smith   link->next         = NULL;
35175dbd56e3SPeter Brune   *p                 = link;
35183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35195dbd56e3SPeter Brune }
35205dbd56e3SPeter Brune 
3521b3a6b972SJed Brown /*@C
352273ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3523b3a6b972SJed Brown 
352420f4b53cSBarry Smith   Logically Collective; No Fortran Support
3525b3a6b972SJed Brown 
35264165533cSJose E. Roman   Input Parameters:
3527bb7acecfSBarry Smith + global       - global `DM`
3528bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3529b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
353020f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3531b3a6b972SJed Brown 
3532b3a6b972SJed Brown   Level: advanced
3533b3a6b972SJed Brown 
353473ff1848SBarry Smith   Note:
353573ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
353673ff1848SBarry Smith 
353773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
353873ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3539b3a6b972SJed Brown @*/
3540d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3541d71ae5a4SJacob Faibussowitsch {
3542b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3543b3a6b972SJed Brown 
3544b3a6b972SJed Brown   PetscFunctionBegin;
3545b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3546b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3547b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3548b3a6b972SJed Brown       link = *p;
3549b3a6b972SJed Brown       *p   = link->next;
35509566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3551b3a6b972SJed Brown       break;
3552b3a6b972SJed Brown     }
3553b3a6b972SJed Brown   }
35543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3555b3a6b972SJed Brown }
3556b3a6b972SJed Brown 
35575dbd56e3SPeter Brune /*@
355873ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35595dbd56e3SPeter Brune 
35605dbd56e3SPeter Brune   Collective if any hooks are
35615dbd56e3SPeter Brune 
35624165533cSJose E. Roman   Input Parameters:
3563a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3564a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3565a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3566a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35675dbd56e3SPeter Brune 
35685dbd56e3SPeter Brune   Level: developer
35695dbd56e3SPeter Brune 
357073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35715dbd56e3SPeter Brune @*/
3572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3573d71ae5a4SJacob Faibussowitsch {
3574be081cd6SPeter Brune   DMSubDomainHookLink link;
35755dbd56e3SPeter Brune 
35765dbd56e3SPeter Brune   PetscFunctionBegin;
3577be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35781baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35795dbd56e3SPeter Brune   }
35803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35815dbd56e3SPeter Brune }
35825dbd56e3SPeter Brune 
35835fe1f584SPeter Brune /*@
3584bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35855fe1f584SPeter Brune 
35865fe1f584SPeter Brune   Not Collective
35875fe1f584SPeter Brune 
35885fe1f584SPeter Brune   Input Parameter:
3589bb7acecfSBarry Smith . dm - the `DM` object
35905fe1f584SPeter Brune 
35915fe1f584SPeter Brune   Output Parameter:
35926a7d9d85SPeter Brune . level - number of coarsenings
35935fe1f584SPeter Brune 
35945fe1f584SPeter Brune   Level: developer
35955fe1f584SPeter Brune 
35961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35975fe1f584SPeter Brune @*/
3598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3599d71ae5a4SJacob Faibussowitsch {
36005fe1f584SPeter Brune   PetscFunctionBegin;
36015fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36024f572ea9SToby Isaac   PetscAssertPointer(level, 2);
36035fe1f584SPeter Brune   *level = dm->leveldown;
36043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36055fe1f584SPeter Brune }
36065fe1f584SPeter Brune 
36079a64c4a8SMatthew G. Knepley /*@
3608bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
36099a64c4a8SMatthew G. Knepley 
361020f4b53cSBarry Smith   Collective
36119a64c4a8SMatthew G. Knepley 
36129a64c4a8SMatthew G. Knepley   Input Parameters:
3613bb7acecfSBarry Smith + dm    - the `DM` object
36149a64c4a8SMatthew G. Knepley - level - number of coarsenings
36159a64c4a8SMatthew G. Knepley 
36169a64c4a8SMatthew G. Knepley   Level: developer
36179a64c4a8SMatthew G. Knepley 
3618bb7acecfSBarry Smith   Note:
3619bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3620bb7acecfSBarry Smith 
362142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36229a64c4a8SMatthew G. Knepley @*/
3623d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3624d71ae5a4SJacob Faibussowitsch {
36259a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36269a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36279a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36299a64c4a8SMatthew G. Knepley }
36309a64c4a8SMatthew G. Knepley 
3631cc4c1da9SBarry Smith /*@
3632bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
363347c6ae99SBarry Smith 
363420f4b53cSBarry Smith   Collective
363547c6ae99SBarry Smith 
3636d8d19677SJose E. Roman   Input Parameters:
3637bb7acecfSBarry Smith + dm      - the `DM` object
363847c6ae99SBarry Smith - nlevels - the number of levels of refinement
363947c6ae99SBarry Smith 
364047c6ae99SBarry Smith   Output Parameter:
3641bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
364247c6ae99SBarry Smith 
364347c6ae99SBarry Smith   Level: developer
364447c6ae99SBarry Smith 
36451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
364647c6ae99SBarry Smith @*/
3647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3648d71ae5a4SJacob Faibussowitsch {
364947c6ae99SBarry Smith   PetscFunctionBegin;
3650171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36517a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36523ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36534f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3654213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
365547c6ae99SBarry Smith     PetscInt i;
365647c6ae99SBarry Smith 
36579566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
365848a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3659213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
366147c6ae99SBarry Smith }
366247c6ae99SBarry Smith 
3663cc4c1da9SBarry Smith /*@
3664bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
366547c6ae99SBarry Smith 
366620f4b53cSBarry Smith   Collective
366747c6ae99SBarry Smith 
3668d8d19677SJose E. Roman   Input Parameters:
3669bb7acecfSBarry Smith + dm      - the `DM` object
367047c6ae99SBarry Smith - nlevels - the number of levels of coarsening
367147c6ae99SBarry Smith 
367247c6ae99SBarry Smith   Output Parameter:
3673bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
367447c6ae99SBarry Smith 
367547c6ae99SBarry Smith   Level: developer
367647c6ae99SBarry Smith 
36771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
367847c6ae99SBarry Smith @*/
3679d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3680d71ae5a4SJacob Faibussowitsch {
368147c6ae99SBarry Smith   PetscFunctionBegin;
3682171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36837a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36843ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36854f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3686213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
368747c6ae99SBarry Smith     PetscInt i;
368847c6ae99SBarry Smith 
36899566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
369048a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3691213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
36923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
369347c6ae99SBarry Smith }
369447c6ae99SBarry Smith 
36951a266240SBarry Smith /*@C
3696bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
36971a266240SBarry Smith 
3698bb7acecfSBarry Smith   Logically Collective if the function is collective
36991a266240SBarry Smith 
37001a266240SBarry Smith   Input Parameters:
3701bb7acecfSBarry Smith + dm      - the `DM` object
370249abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence
37031a266240SBarry Smith 
37041a266240SBarry Smith   Level: intermediate
37051a266240SBarry Smith 
370649abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`,
370749abdd8aSBarry Smith           `DMGetApplicationContext()`, `PetscCtxDestroyFn`
3708f07f9ceaSJed Brown @*/
370949abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy)
3710d71ae5a4SJacob Faibussowitsch {
37111a266240SBarry Smith   PetscFunctionBegin;
3712171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37131a266240SBarry Smith   dm->ctxdestroy = destroy;
37143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37151a266240SBarry Smith }
37161a266240SBarry Smith 
3717b07ff414SBarry Smith /*@
3718bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
371947c6ae99SBarry Smith 
372047c6ae99SBarry Smith   Not Collective
372147c6ae99SBarry Smith 
372247c6ae99SBarry Smith   Input Parameters:
3723bb7acecfSBarry Smith + dm  - the `DM` object
372447c6ae99SBarry Smith - ctx - the user context
372547c6ae99SBarry Smith 
372647c6ae99SBarry Smith   Level: intermediate
372747c6ae99SBarry Smith 
3728e33b3f0fSStefano Zampini   Notes:
372935cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3730e33b3f0fSStefano Zampini   In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable
3731e33b3f0fSStefano Zampini   to store objects that represent discretized quantities inside the context.
3732bb7acecfSBarry Smith 
373360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
373447c6ae99SBarry Smith @*/
3735d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3736d71ae5a4SJacob Faibussowitsch {
373747c6ae99SBarry Smith   PetscFunctionBegin;
3738171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
373947c6ae99SBarry Smith   dm->ctx = ctx;
37403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
374147c6ae99SBarry Smith }
374247c6ae99SBarry Smith 
374347c6ae99SBarry Smith /*@
3744bb7acecfSBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object
374547c6ae99SBarry Smith 
374647c6ae99SBarry Smith   Not Collective
374747c6ae99SBarry Smith 
374847c6ae99SBarry Smith   Input Parameter:
3749bb7acecfSBarry Smith . dm - the `DM` object
375047c6ae99SBarry Smith 
375147c6ae99SBarry Smith   Output Parameter:
375247c6ae99SBarry Smith . ctx - the user context
375347c6ae99SBarry Smith 
375447c6ae99SBarry Smith   Level: intermediate
375547c6ae99SBarry Smith 
3756bb7acecfSBarry Smith   Note:
375735cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3758bb7acecfSBarry Smith 
375942747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
376047c6ae99SBarry Smith @*/
3761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3762d71ae5a4SJacob Faibussowitsch {
376347c6ae99SBarry Smith   PetscFunctionBegin;
3764171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37651b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376747c6ae99SBarry Smith }
376847c6ae99SBarry Smith 
376908da532bSDmitry Karpeev /*@C
3770bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
377108da532bSDmitry Karpeev 
377220f4b53cSBarry Smith   Logically Collective
377308da532bSDmitry Karpeev 
3774d8d19677SJose E. Roman   Input Parameters:
377508da532bSDmitry Karpeev + dm - the DM object
377620f4b53cSBarry Smith - f  - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
377708da532bSDmitry Karpeev 
377808da532bSDmitry Karpeev   Level: intermediate
377908da532bSDmitry Karpeev 
37801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3781db781477SPatrick Sanan          `DMSetJacobian()`
378208da532bSDmitry Karpeev @*/
3783d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3784d71ae5a4SJacob Faibussowitsch {
378508da532bSDmitry Karpeev   PetscFunctionBegin;
37865a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
378708da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
37883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
378908da532bSDmitry Karpeev }
379008da532bSDmitry Karpeev 
379108da532bSDmitry Karpeev /*@
3792bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
379308da532bSDmitry Karpeev 
379408da532bSDmitry Karpeev   Not Collective
379508da532bSDmitry Karpeev 
379608da532bSDmitry Karpeev   Input Parameter:
3797bb7acecfSBarry Smith . dm - the `DM` object to destroy
379808da532bSDmitry Karpeev 
379908da532bSDmitry Karpeev   Output Parameter:
3800bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
380108da532bSDmitry Karpeev 
380208da532bSDmitry Karpeev   Level: developer
380308da532bSDmitry Karpeev 
38041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
380508da532bSDmitry Karpeev @*/
3806d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3807d71ae5a4SJacob Faibussowitsch {
380808da532bSDmitry Karpeev   PetscFunctionBegin;
38095a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38104f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
381108da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
38123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
381308da532bSDmitry Karpeev }
381408da532bSDmitry Karpeev 
3815cc4c1da9SBarry Smith /*@
3816bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
381708da532bSDmitry Karpeev 
381820f4b53cSBarry Smith   Logically Collective
381908da532bSDmitry Karpeev 
3820f899ff85SJose E. Roman   Input Parameter:
3821bb7acecfSBarry Smith . dm - the `DM` object
382208da532bSDmitry Karpeev 
382360225df5SJacob Faibussowitsch   Output Parameters:
382408da532bSDmitry Karpeev + xl - lower bound
382508da532bSDmitry Karpeev - xu - upper bound
382608da532bSDmitry Karpeev 
3827907376e6SBarry Smith   Level: advanced
3828907376e6SBarry Smith 
382920f4b53cSBarry Smith   Note:
383095452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
383108da532bSDmitry Karpeev 
38321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
383308da532bSDmitry Karpeev @*/
3834d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3835d71ae5a4SJacob Faibussowitsch {
383608da532bSDmitry Karpeev   PetscFunctionBegin;
38375a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
383808da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38395a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3840dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384208da532bSDmitry Karpeev }
384308da532bSDmitry Karpeev 
3844b0ae01b7SPeter Brune /*@
3845bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3846b0ae01b7SPeter Brune 
3847b0ae01b7SPeter Brune   Not Collective
3848b0ae01b7SPeter Brune 
3849b0ae01b7SPeter Brune   Input Parameter:
3850b0ae01b7SPeter Brune . dm - the DM object
3851b0ae01b7SPeter Brune 
3852b0ae01b7SPeter Brune   Output Parameter:
3853bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3854b0ae01b7SPeter Brune 
3855b0ae01b7SPeter Brune   Level: developer
3856b0ae01b7SPeter Brune 
38571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3858b0ae01b7SPeter Brune @*/
3859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3860d71ae5a4SJacob Faibussowitsch {
3861b0ae01b7SPeter Brune   PetscFunctionBegin;
38625a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38634f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3864b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3866b0ae01b7SPeter Brune }
3867b0ae01b7SPeter Brune 
38683ad4599aSBarry Smith /*@
3869bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38703ad4599aSBarry Smith 
38713ad4599aSBarry Smith   Not Collective
38723ad4599aSBarry Smith 
38733ad4599aSBarry Smith   Input Parameter:
3874bb7acecfSBarry Smith . dm - the `DM` object
38753ad4599aSBarry Smith 
38763ad4599aSBarry Smith   Output Parameter:
3877bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38783ad4599aSBarry Smith 
38793ad4599aSBarry Smith   Level: developer
38803ad4599aSBarry Smith 
38811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38823ad4599aSBarry Smith @*/
3883d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3884d71ae5a4SJacob Faibussowitsch {
38853ad4599aSBarry Smith   PetscFunctionBegin;
38865a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38874f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
38883ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38903ad4599aSBarry Smith }
38913ad4599aSBarry Smith 
3892a7058e45SLawrence Mitchell /*@
3893bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3894a7058e45SLawrence Mitchell 
3895a7058e45SLawrence Mitchell   Not Collective
3896a7058e45SLawrence Mitchell 
3897a7058e45SLawrence Mitchell   Input Parameter:
3898bb7acecfSBarry Smith . dm - the `DM` object
3899a7058e45SLawrence Mitchell 
3900a7058e45SLawrence Mitchell   Output Parameter:
3901bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3902a7058e45SLawrence Mitchell 
3903a7058e45SLawrence Mitchell   Level: developer
3904a7058e45SLawrence Mitchell 
39051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3906a7058e45SLawrence Mitchell @*/
3907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3908d71ae5a4SJacob Faibussowitsch {
3909a7058e45SLawrence Mitchell   PetscFunctionBegin;
39105a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39114f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3912dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3913ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
39143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3915a7058e45SLawrence Mitchell }
3916a7058e45SLawrence Mitchell 
39170298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3918264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3919264ace61SBarry Smith 
3920cc4c1da9SBarry Smith /*@
3921bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3922264ace61SBarry Smith 
392320f4b53cSBarry Smith   Collective
3924264ace61SBarry Smith 
3925264ace61SBarry Smith   Input Parameters:
3926bb7acecfSBarry Smith + dm     - The `DM` object
3927bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3928264ace61SBarry Smith 
3929264ace61SBarry Smith   Options Database Key:
3930bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3931264ace61SBarry Smith 
3932264ace61SBarry Smith   Level: intermediate
3933264ace61SBarry Smith 
3934bb7acecfSBarry Smith   Note:
39350462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3936bb7acecfSBarry Smith 
39371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3938264ace61SBarry Smith @*/
3939d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3940d71ae5a4SJacob Faibussowitsch {
3941264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3942264ace61SBarry Smith   PetscBool match;
3943264ace61SBarry Smith 
3944264ace61SBarry Smith   PetscFunctionBegin;
3945264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39473ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3948264ace61SBarry Smith 
39499566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39509566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39517a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3952264ace61SBarry Smith 
3953dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39549566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39559566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39569566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3958264ace61SBarry Smith }
3959264ace61SBarry Smith 
3960cc4c1da9SBarry Smith /*@
3961bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3962264ace61SBarry Smith 
3963264ace61SBarry Smith   Not Collective
3964264ace61SBarry Smith 
3965264ace61SBarry Smith   Input Parameter:
3966bb7acecfSBarry Smith . dm - The `DM`
3967264ace61SBarry Smith 
3968264ace61SBarry Smith   Output Parameter:
3969bb7acecfSBarry Smith . type - The `DMType` name
3970264ace61SBarry Smith 
3971264ace61SBarry Smith   Level: intermediate
3972264ace61SBarry Smith 
39731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3974264ace61SBarry Smith @*/
3975d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3976d71ae5a4SJacob Faibussowitsch {
3977264ace61SBarry Smith   PetscFunctionBegin;
3978264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39794f572ea9SToby Isaac   PetscAssertPointer(type, 2);
39809566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3981264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
39823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3983264ace61SBarry Smith }
3984264ace61SBarry Smith 
39855d83a8b1SBarry Smith /*@
3986bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
398767a56275SMatthew G Knepley 
398820f4b53cSBarry Smith   Collective
398967a56275SMatthew G Knepley 
399067a56275SMatthew G Knepley   Input Parameters:
3991bb7acecfSBarry Smith + dm      - the `DM`
3992bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
399367a56275SMatthew G Knepley 
399467a56275SMatthew G Knepley   Output Parameter:
3995bb7acecfSBarry Smith . M - pointer to new `DM`
399667a56275SMatthew G Knepley 
399720f4b53cSBarry Smith   Level: intermediate
399820f4b53cSBarry Smith 
399973ff1848SBarry Smith   Note:
4000bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
4001bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
4002bb7acecfSBarry Smith   of the input `DM`.
400367a56275SMatthew G Knepley 
40041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
400567a56275SMatthew G Knepley @*/
4006d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
4007d71ae5a4SJacob Faibussowitsch {
400867a56275SMatthew G Knepley   DM        B;
400967a56275SMatthew G Knepley   char      convname[256];
4010c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
401167a56275SMatthew G Knepley 
401267a56275SMatthew G Knepley   PetscFunctionBegin;
401367a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
401467a56275SMatthew G Knepley   PetscValidType(dm, 1);
40154f572ea9SToby Isaac   PetscAssertPointer(M, 3);
40169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
40179566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
4018c067b6caSMatthew G. Knepley   if (sametype) {
4019c067b6caSMatthew G. Knepley     *M = dm;
40209566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4022c067b6caSMatthew G. Knepley   } else {
40230298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
402467a56275SMatthew G Knepley 
402567a56275SMatthew G Knepley     /*
402667a56275SMatthew G Knepley        Order of precedence:
402767a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
402867a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
402967a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
403067a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
403167a56275SMatthew G Knepley        5) Use a really basic converter.
403267a56275SMatthew G Knepley     */
403367a56275SMatthew G Knepley 
403467a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40359566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40369566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40379566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40389566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40399566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40409566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
404167a56275SMatthew G Knepley     if (conv) goto foundconv;
404267a56275SMatthew G Knepley 
404367a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40449566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40459566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40469566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40479566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40489566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40499566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40509566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40519566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
405267a56275SMatthew G Knepley     if (conv) {
40539566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
405467a56275SMatthew G Knepley       goto foundconv;
405567a56275SMatthew G Knepley     }
405667a56275SMatthew G Knepley 
405767a56275SMatthew G Knepley #if 0
405867a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
405967a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40609566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
406167a56275SMatthew G Knepley     if (conv) goto foundconv;
406267a56275SMatthew G Knepley 
406367a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
406467a56275SMatthew G Knepley     if (dm->ops->convert) {
406567a56275SMatthew G Knepley       conv = dm->ops->convert;
406667a56275SMatthew G Knepley     }
406767a56275SMatthew G Knepley     if (conv) goto foundconv;
406867a56275SMatthew G Knepley #endif
406967a56275SMatthew G Knepley 
407067a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
407198921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
407267a56275SMatthew G Knepley 
407367a56275SMatthew G Knepley   foundconv:
40749566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40759566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
407612fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
407790b157c4SStefano Zampini     {
40784fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40796858538eSMatthew G. Knepley 
40804fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40814fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4082c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40839566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40849566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40859566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40869566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
408712fa691eSMatthew G. Knepley     }
40889566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
408967a56275SMatthew G Knepley   }
40909566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
40913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
409267a56275SMatthew G Knepley }
4093264ace61SBarry Smith 
4094264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4095264ace61SBarry Smith 
4096264ace61SBarry Smith /*@C
4097bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
40981c84c290SBarry Smith 
4099cc4c1da9SBarry Smith   Not Collective, No Fortran Support
41001c84c290SBarry Smith 
41011c84c290SBarry Smith   Input Parameters:
410220f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
410320f4b53cSBarry Smith - function - The creation routine itself
410420f4b53cSBarry Smith 
410520f4b53cSBarry Smith   Level: advanced
41061c84c290SBarry Smith 
410773ff1848SBarry Smith   Note:
410820f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
41091c84c290SBarry Smith 
411060225df5SJacob Faibussowitsch   Example Usage:
41111c84c290SBarry Smith .vb
4112bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
41131c84c290SBarry Smith .ve
41141c84c290SBarry Smith 
411520f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
41161c84c290SBarry Smith .vb
41171c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
41181c84c290SBarry Smith     DMSetType(DM,"my_da");
41191c84c290SBarry Smith .ve
41201c84c290SBarry Smith   or at runtime via the option
41211c84c290SBarry Smith .vb
41221c84c290SBarry Smith     -da_type my_da
41231c84c290SBarry Smith .ve
4124264ace61SBarry Smith 
41251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4126264ace61SBarry Smith @*/
4127d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4128d71ae5a4SJacob Faibussowitsch {
4129264ace61SBarry Smith   PetscFunctionBegin;
41309566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41319566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4133264ace61SBarry Smith }
4134264ace61SBarry Smith 
4135ffeef943SBarry Smith /*@
4136bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4137b859378eSBarry Smith 
413820f4b53cSBarry Smith   Collective
4139b859378eSBarry Smith 
4140b859378eSBarry Smith   Input Parameters:
4141bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4142bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4143bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4144bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4145b859378eSBarry Smith 
4146b859378eSBarry Smith   Level: intermediate
4147b859378eSBarry Smith 
4148b859378eSBarry Smith   Notes:
414955849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4150b859378eSBarry Smith 
4151bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4152bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4153bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4154cd7e8a5eSksagiyam 
41551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4156b859378eSBarry Smith @*/
4157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4158d71ae5a4SJacob Faibussowitsch {
41599331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4160b859378eSBarry Smith 
4161b859378eSBarry Smith   PetscFunctionBegin;
4162b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4163b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41649566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41669566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41689331c7a4SMatthew G. Knepley   if (isbinary) {
41699331c7a4SMatthew G. Knepley     PetscInt classid;
41709331c7a4SMatthew G. Knepley     char     type[256];
4171b859378eSBarry Smith 
41729566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4173835f2295SStefano Zampini     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid);
41749566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41759566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4176dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41779331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4178dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41799331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
41813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4182b859378eSBarry Smith }
4183b859378eSBarry Smith 
41844ee01570SBarry Smith /* FEM Support */
41857da65231SMatthew G Knepley 
41862ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
41872ecf6ec3SMatthew G. Knepley {
41882ecf6ec3SMatthew G. Knepley   PetscInt f;
41892ecf6ec3SMatthew G. Knepley 
41902ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
41912ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41922ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
41932ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
41942ecf6ec3SMatthew G. Knepley }
41952ecf6ec3SMatthew G. Knepley 
4196d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4197d71ae5a4SJacob Faibussowitsch {
41981d47ebbbSSatish Balay   PetscInt f;
41991b30c384SMatthew G Knepley 
42007da65231SMatthew G Knepley   PetscFunctionBegin;
420163a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
420248a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
42033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42047da65231SMatthew G Knepley }
42057da65231SMatthew G Knepley 
42065962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
42075962854dSMatthew G. Knepley {
42085962854dSMatthew G. Knepley   PetscInt f;
42095962854dSMatthew G. Knepley 
42105962854dSMatthew G. Knepley   PetscFunctionBegin;
42115962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42125962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
42135962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42145962854dSMatthew G. Knepley }
42155962854dSMatthew G. Knepley 
4216d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4217d71ae5a4SJacob Faibussowitsch {
42181b30c384SMatthew G Knepley   PetscInt f, g;
42197da65231SMatthew G Knepley 
42207da65231SMatthew G Knepley   PetscFunctionBegin;
422163a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42221d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42239566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
422448a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42259566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42267da65231SMatthew G Knepley   }
42273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42287da65231SMatthew G Knepley }
4229e7c4fc90SDmitry Karpeev 
4230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4231d71ae5a4SJacob Faibussowitsch {
42320c5b8624SToby Isaac   PetscInt           localSize, bs;
42330c5b8624SToby Isaac   PetscMPIInt        size;
42340c5b8624SToby Isaac   Vec                x, xglob;
42350c5b8624SToby Isaac   const PetscScalar *xarray;
4236e759306cSMatthew G. Knepley 
4237e759306cSMatthew G. Knepley   PetscFunctionBegin;
42389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42399566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42409566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
424193ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42429566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42430c5b8624SToby Isaac   if (size > 1) {
42449566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42459566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42469566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42479566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42480c5b8624SToby Isaac   } else {
42490c5b8624SToby Isaac     xglob = x;
42500c5b8624SToby Isaac   }
42519566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42520c5b8624SToby Isaac   if (size > 1) {
42539566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42549566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42550c5b8624SToby Isaac   }
42569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
42573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4258e759306cSMatthew G. Knepley }
4259e759306cSMatthew G. Knepley 
426088ed4aceSMatthew G Knepley /*@
4261bb7acecfSBarry Smith   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4262061576a5SJed Brown 
4263061576a5SJed Brown   Input Parameter:
4264bb7acecfSBarry Smith . dm - The `DM`
4265061576a5SJed Brown 
4266061576a5SJed Brown   Output Parameter:
4267bb7acecfSBarry Smith . section - The `PetscSection`
4268061576a5SJed Brown 
426920f4b53cSBarry Smith   Options Database Key:
4270bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4271061576a5SJed Brown 
4272061576a5SJed Brown   Level: advanced
4273061576a5SJed Brown 
4274061576a5SJed Brown   Notes:
4275bb7acecfSBarry Smith   Use `DMGetLocalSection()` in new code.
4276061576a5SJed Brown 
4277bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4278061576a5SJed Brown 
42791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4280061576a5SJed Brown @*/
4281d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4282d71ae5a4SJacob Faibussowitsch {
4283061576a5SJed Brown   PetscFunctionBegin;
42849566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, section));
42853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4286061576a5SJed Brown }
4287061576a5SJed Brown 
4288061576a5SJed Brown /*@
4289bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
429088ed4aceSMatthew G Knepley 
429188ed4aceSMatthew G Knepley   Input Parameter:
4292bb7acecfSBarry Smith . dm - The `DM`
429388ed4aceSMatthew G Knepley 
429488ed4aceSMatthew G Knepley   Output Parameter:
4295bb7acecfSBarry Smith . section - The `PetscSection`
429688ed4aceSMatthew G Knepley 
429720f4b53cSBarry Smith   Options Database Key:
4298bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4299e5893cccSMatthew G. Knepley 
430088ed4aceSMatthew G Knepley   Level: intermediate
430188ed4aceSMatthew G Knepley 
4302bb7acecfSBarry Smith   Note:
4303bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
430488ed4aceSMatthew G Knepley 
43051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
430688ed4aceSMatthew G Knepley @*/
4307d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4308d71ae5a4SJacob Faibussowitsch {
430988ed4aceSMatthew G Knepley   PetscFunctionBegin;
431088ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43114f572ea9SToby Isaac   PetscAssertPointer(section, 2);
43121bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4313e5e52638SMatthew G. Knepley     PetscInt d;
4314e5e52638SMatthew G. Knepley 
431545480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
431645480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
431745480ffeSMatthew G. Knepley       PetscViewer       viewer;
431845480ffeSMatthew G. Knepley       PetscViewerFormat format;
431945480ffeSMatthew G. Knepley       PetscBool         flg;
432045480ffeSMatthew G. Knepley 
4321648c30bcSBarry Smith       PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
43229566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
432345480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
43249566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43259566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
432645480ffeSMatthew G. Knepley       }
432745480ffeSMatthew G. Knepley       if (flg) {
43289566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43299566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4330648c30bcSBarry Smith         PetscCall(PetscViewerDestroy(&viewer));
433145480ffeSMatthew G. Knepley       }
433245480ffeSMatthew G. Knepley     }
4333dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43349566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43352f0f8703SMatthew G. Knepley   }
43361bb6d2a8SBarry Smith   *section = dm->localSection;
43373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
433888ed4aceSMatthew G Knepley }
433988ed4aceSMatthew G Knepley 
434088ed4aceSMatthew G Knepley /*@
4341bb7acecfSBarry Smith   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4342061576a5SJed Brown 
4343061576a5SJed Brown   Input Parameters:
4344bb7acecfSBarry Smith + dm      - The `DM`
4345bb7acecfSBarry Smith - section - The `PetscSection`
4346061576a5SJed Brown 
4347061576a5SJed Brown   Level: advanced
4348061576a5SJed Brown 
4349061576a5SJed Brown   Notes:
4350bb7acecfSBarry Smith   Use `DMSetLocalSection()` in new code.
4351061576a5SJed Brown 
4352bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4353061576a5SJed Brown 
43541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4355061576a5SJed Brown @*/
4356d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section)
4357d71ae5a4SJacob Faibussowitsch {
4358061576a5SJed Brown   PetscFunctionBegin;
43599566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
43603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4361061576a5SJed Brown }
4362061576a5SJed Brown 
4363061576a5SJed Brown /*@
4364bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
436588ed4aceSMatthew G Knepley 
436688ed4aceSMatthew G Knepley   Input Parameters:
4367bb7acecfSBarry Smith + dm      - The `DM`
4368bb7acecfSBarry Smith - section - The `PetscSection`
436988ed4aceSMatthew G Knepley 
437088ed4aceSMatthew G Knepley   Level: intermediate
437188ed4aceSMatthew G Knepley 
4372bb7acecfSBarry Smith   Note:
4373bb7acecfSBarry Smith   Any existing Section will be destroyed
437488ed4aceSMatthew G Knepley 
43751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
437688ed4aceSMatthew G Knepley @*/
4377d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4378d71ae5a4SJacob Faibussowitsch {
4379c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4380af122d2aSMatthew G Knepley   PetscInt f;
438188ed4aceSMatthew G Knepley 
438288ed4aceSMatthew G Knepley   PetscFunctionBegin;
438388ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4384b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43859566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43869566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43871bb6d2a8SBarry Smith   dm->localSection = section;
43889566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4389af122d2aSMatthew G Knepley   if (numFields) {
43909566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4391af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43920f21e855SMatthew G. Knepley       PetscObject disc;
4393af122d2aSMatthew G Knepley       const char *name;
4394af122d2aSMatthew G Knepley 
43959566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43969566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43979566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4398af122d2aSMatthew G Knepley     }
4399af122d2aSMatthew G Knepley   }
440050350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
440150350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
44029566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
440350350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
440452947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
440550350c8eSStefano Zampini 
440650350c8eSStefano Zampini   /* Clear scratch vectors */
440750350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
440850350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
440950350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
441050350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
44113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
441288ed4aceSMatthew G Knepley }
441388ed4aceSMatthew G Knepley 
4414adc21957SMatthew G. Knepley /*@C
4415d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4416adc21957SMatthew G. Knepley 
4417adc21957SMatthew G. Knepley   Input Parameter:
4418adc21957SMatthew G. Knepley . dm - The `DM`
4419adc21957SMatthew G. Knepley 
44209cde84edSJose E. Roman   Output Parameters:
4421adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4422b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking
4423adc21957SMatthew G. Knepley 
4424adc21957SMatthew G. Knepley   Level: developer
4425adc21957SMatthew G. Knepley 
4426adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4427adc21957SMatthew G. Knepley @*/
4428adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4429adc21957SMatthew G. Knepley {
4430adc21957SMatthew G. Knepley   PetscFunctionBegin;
4431adc21957SMatthew G. Knepley   *perm        = NULL;
4432adc21957SMatthew G. Knepley   *blockStarts = NULL;
4433adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4434adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4435adc21957SMatthew G. Knepley }
4436adc21957SMatthew G. Knepley 
44379435951eSToby Isaac /*@
4438bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
44399435951eSToby Isaac 
444020f4b53cSBarry Smith   not Collective
4441e228b242SToby Isaac 
44429435951eSToby Isaac   Input Parameter:
4443bb7acecfSBarry Smith . dm - The `DM`
44449435951eSToby Isaac 
4445d8d19677SJose E. Roman   Output Parameters:
444620f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
444720f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
444879769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44499435951eSToby Isaac 
44509435951eSToby Isaac   Level: advanced
44519435951eSToby Isaac 
4452bb7acecfSBarry Smith   Note:
4453bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44549435951eSToby Isaac 
44551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44569435951eSToby Isaac @*/
4457d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4458d71ae5a4SJacob Faibussowitsch {
44599435951eSToby Isaac   PetscFunctionBegin;
44609435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4461dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44623b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44633b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
446479769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44669435951eSToby Isaac }
44679435951eSToby Isaac 
44689435951eSToby Isaac /*@
4469bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44709435951eSToby Isaac 
447120f4b53cSBarry Smith   Collective
4472e228b242SToby Isaac 
44739435951eSToby Isaac   Input Parameters:
4474bb7acecfSBarry Smith + dm      - The `DM`
4475bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
447620f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
447720f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44789435951eSToby Isaac 
44799435951eSToby Isaac   Level: advanced
44809435951eSToby Isaac 
448120f4b53cSBarry Smith   Notes:
448220f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
448320f4b53cSBarry Smith 
448420f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
448520f4b53cSBarry Smith 
4486bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44879435951eSToby Isaac 
44881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44899435951eSToby Isaac @*/
4490d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4491d71ae5a4SJacob Faibussowitsch {
4492e228b242SToby Isaac   PetscMPIInt result;
44939435951eSToby Isaac 
44949435951eSToby Isaac   PetscFunctionBegin;
44959435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4496e228b242SToby Isaac   if (section) {
4497e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44989566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44997a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4500e228b242SToby Isaac   }
4501e228b242SToby Isaac   if (mat) {
4502e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
45039566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
45047a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4505e228b242SToby Isaac   }
450679769bd5SJed Brown   if (bias) {
450779769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
45089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
450979769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
451079769bd5SJed Brown   }
45119566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
45129566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
45133b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
45149566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
45159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
45163b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
45179566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
45189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
451979769bd5SJed Brown   dm->defaultConstraint.bias = bias;
45203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45219435951eSToby Isaac }
45229435951eSToby Isaac 
4523497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4524507e4973SMatthew G. Knepley /*
4525bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4526507e4973SMatthew G. Knepley 
4527507e4973SMatthew G. Knepley   Input Parameters:
4528bb7acecfSBarry Smith + dm - The `DM`
4529bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4530bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4531507e4973SMatthew G. Knepley 
4532507e4973SMatthew G. Knepley   Level: intermediate
4533507e4973SMatthew G. Knepley 
45341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4535507e4973SMatthew G. Knepley */
4536d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4537d71ae5a4SJacob Faibussowitsch {
4538507e4973SMatthew G. Knepley   MPI_Comm        comm;
4539507e4973SMatthew G. Knepley   PetscLayout     layout;
4540507e4973SMatthew G. Knepley   const PetscInt *ranges;
4541507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4542507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4543507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4544507e4973SMatthew G. Knepley 
4545507e4973SMatthew G. Knepley   PetscFunctionBegin;
45469566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4547507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45509566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45519566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4557507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4558f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4559507e4973SMatthew G. Knepley 
45609566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45619566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45629566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45639566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45649566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45659566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4566507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45679371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45689371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45699371c9d4SSatish Balay       valid = PETSC_FALSE;
45709371c9d4SSatish Balay     }
45719371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45729371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45739371c9d4SSatish Balay       valid = PETSC_FALSE;
45749371c9d4SSatish Balay     }
4575507e4973SMatthew G. Knepley     if (gdof < 0) {
4576507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4577507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4578507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4579507e4973SMatthew G. Knepley 
45809566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4581507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45829371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45839371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45849371c9d4SSatish Balay           valid = PETSC_FALSE;
45859371c9d4SSatish Balay           break;
45869371c9d4SSatish Balay         }
4587507e4973SMatthew G. Knepley       }
4588507e4973SMatthew G. Knepley     }
4589507e4973SMatthew G. Knepley   }
45909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45919566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
4592462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4593507e4973SMatthew G. Knepley   if (!gvalid) {
45949566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4595507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4596507e4973SMatthew G. Knepley   }
45973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4598507e4973SMatthew G. Knepley }
4599f741bcd2SMatthew G. Knepley #endif
4600507e4973SMatthew G. Knepley 
460190df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
46026725e60dSJed Brown {
46036725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
46044d86920dSPierre Jolivet 
46056725e60dSJed Brown   PetscFunctionBegin;
46066725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46074f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
46085f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
46096725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
46106725e60dSJed Brown   else *sf = dm->sf;
46113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46126725e60dSJed Brown }
46136725e60dSJed Brown 
461488ed4aceSMatthew G Knepley /*@
4615bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
461688ed4aceSMatthew G Knepley 
461720f4b53cSBarry Smith   Collective
46188b1ab98fSJed Brown 
461988ed4aceSMatthew G Knepley   Input Parameter:
4620bb7acecfSBarry Smith . dm - The `DM`
462188ed4aceSMatthew G Knepley 
462288ed4aceSMatthew G Knepley   Output Parameter:
4623bb7acecfSBarry Smith . section - The `PetscSection`
462488ed4aceSMatthew G Knepley 
462588ed4aceSMatthew G Knepley   Level: intermediate
462688ed4aceSMatthew G Knepley 
4627bb7acecfSBarry Smith   Note:
4628bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
462988ed4aceSMatthew G Knepley 
46301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
463188ed4aceSMatthew G Knepley @*/
4632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4633d71ae5a4SJacob Faibussowitsch {
463488ed4aceSMatthew G Knepley   PetscFunctionBegin;
463588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46364f572ea9SToby Isaac   PetscAssertPointer(section, 2);
46371bb6d2a8SBarry Smith   if (!dm->globalSection) {
4638fd59a867SMatthew G. Knepley     PetscSection s;
46396725e60dSJed Brown     PetscSF      sf;
4640fd59a867SMatthew G. Knepley 
46419566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
46427a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
46437a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
46445f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4645eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
46469566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
46479566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46489566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
464988ed4aceSMatthew G Knepley   }
46501bb6d2a8SBarry Smith   *section = dm->globalSection;
46513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
465288ed4aceSMatthew G Knepley }
465388ed4aceSMatthew G Knepley 
4654b21d0597SMatthew G Knepley /*@
4655bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4656b21d0597SMatthew G Knepley 
4657b21d0597SMatthew G Knepley   Input Parameters:
4658bb7acecfSBarry Smith + dm      - The `DM`
46592fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4660b21d0597SMatthew G Knepley 
4661b21d0597SMatthew G Knepley   Level: intermediate
4662b21d0597SMatthew G Knepley 
4663bb7acecfSBarry Smith   Note:
4664bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4665b21d0597SMatthew G Knepley 
46661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4667b21d0597SMatthew G Knepley @*/
4668d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4669d71ae5a4SJacob Faibussowitsch {
4670b21d0597SMatthew G Knepley   PetscFunctionBegin;
4671b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46725080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46739566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46749566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46751bb6d2a8SBarry Smith   dm->globalSection = section;
4676497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46779566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4678507e4973SMatthew G. Knepley #endif
467950350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
468050350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
468152947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
468250350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
468350350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4685b21d0597SMatthew G Knepley }
4686b21d0597SMatthew G Knepley 
468788ed4aceSMatthew G Knepley /*@
4688bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4689bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
469088ed4aceSMatthew G Knepley 
469188ed4aceSMatthew G Knepley   Input Parameter:
4692bb7acecfSBarry Smith . dm - The `DM`
469388ed4aceSMatthew G Knepley 
469488ed4aceSMatthew G Knepley   Output Parameter:
4695bb7acecfSBarry Smith . sf - The `PetscSF`
469688ed4aceSMatthew G Knepley 
469788ed4aceSMatthew G Knepley   Level: intermediate
469888ed4aceSMatthew G Knepley 
4699bb7acecfSBarry Smith   Note:
4700bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
470188ed4aceSMatthew G Knepley 
47021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
470388ed4aceSMatthew G Knepley @*/
4704d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4705d71ae5a4SJacob Faibussowitsch {
470688ed4aceSMatthew G Knepley   PetscInt nroots;
470788ed4aceSMatthew G Knepley 
470888ed4aceSMatthew G Knepley   PetscFunctionBegin;
470988ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47104f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
471148a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
47129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
471388ed4aceSMatthew G Knepley   if (nroots < 0) {
471488ed4aceSMatthew G Knepley     PetscSection section, gSection;
471588ed4aceSMatthew G Knepley 
47169566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
471731ea6d37SMatthew G Knepley     if (section) {
47189566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
47199566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
472031ea6d37SMatthew G Knepley     } else {
47210298fd71SBarry Smith       *sf = NULL;
47223ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
472331ea6d37SMatthew G Knepley     }
472488ed4aceSMatthew G Knepley   }
47251bb6d2a8SBarry Smith   *sf = dm->sectionSF;
47263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
472788ed4aceSMatthew G Knepley }
472888ed4aceSMatthew G Knepley 
472988ed4aceSMatthew G Knepley /*@
4730bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
473188ed4aceSMatthew G Knepley 
473288ed4aceSMatthew G Knepley   Input Parameters:
4733bb7acecfSBarry Smith + dm - The `DM`
4734bb7acecfSBarry Smith - sf - The `PetscSF`
473588ed4aceSMatthew G Knepley 
473688ed4aceSMatthew G Knepley   Level: intermediate
473788ed4aceSMatthew G Knepley 
4738bb7acecfSBarry Smith   Note:
4739bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
474088ed4aceSMatthew G Knepley 
47411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
474288ed4aceSMatthew G Knepley @*/
4743d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4744d71ae5a4SJacob Faibussowitsch {
474588ed4aceSMatthew G Knepley   PetscFunctionBegin;
474688ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4747b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47489566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47501bb6d2a8SBarry Smith   dm->sectionSF = sf;
47513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
475288ed4aceSMatthew G Knepley }
475388ed4aceSMatthew G Knepley 
4754cc4c1da9SBarry Smith /*@
4755bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
475688ed4aceSMatthew G Knepley   describing the data layout.
475788ed4aceSMatthew G Knepley 
475888ed4aceSMatthew G Knepley   Input Parameters:
4759bb7acecfSBarry Smith + dm            - The `DM`
4760bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4761bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
476288ed4aceSMatthew G Knepley 
47631bb6d2a8SBarry Smith   Level: developer
47641bb6d2a8SBarry Smith 
4765bb7acecfSBarry Smith   Note:
4766bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4767bb7acecfSBarry Smith 
476873ff1848SBarry Smith   Developer Note:
4769bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4770bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4771b6971eaeSBarry Smith   input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing
4772b6971eaeSBarry Smith   they create, this returns nothing
47731bb6d2a8SBarry Smith 
47741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
477588ed4aceSMatthew G Knepley @*/
4776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4777d71ae5a4SJacob Faibussowitsch {
477888ed4aceSMatthew G Knepley   PetscFunctionBegin;
477988ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47809566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
478288ed4aceSMatthew G Knepley }
4783af122d2aSMatthew G Knepley 
4784b21d0597SMatthew G Knepley /*@
4785bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4786bb7acecfSBarry Smith 
4787bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4788b21d0597SMatthew G Knepley 
4789b21d0597SMatthew G Knepley   Input Parameter:
4790bb7acecfSBarry Smith . dm - The `DM`
4791b21d0597SMatthew G Knepley 
4792b21d0597SMatthew G Knepley   Output Parameter:
4793bb7acecfSBarry Smith . sf - The `PetscSF`
4794b21d0597SMatthew G Knepley 
4795b21d0597SMatthew G Knepley   Level: intermediate
4796b21d0597SMatthew G Knepley 
4797bb7acecfSBarry Smith   Note:
4798bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4799b21d0597SMatthew G Knepley 
48001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4801b21d0597SMatthew G Knepley @*/
4802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4803d71ae5a4SJacob Faibussowitsch {
4804b21d0597SMatthew G Knepley   PetscFunctionBegin;
4805b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48064f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4807b21d0597SMatthew G Knepley   *sf = dm->sf;
48083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4809b21d0597SMatthew G Knepley }
4810b21d0597SMatthew G Knepley 
4811057b4bcdSMatthew G Knepley /*@
4812bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4813bb7acecfSBarry Smith 
481420f4b53cSBarry Smith   Collective
4815057b4bcdSMatthew G Knepley 
4816057b4bcdSMatthew G Knepley   Input Parameters:
4817bb7acecfSBarry Smith + dm - The `DM`
4818bb7acecfSBarry Smith - sf - The `PetscSF`
4819057b4bcdSMatthew G Knepley 
4820057b4bcdSMatthew G Knepley   Level: intermediate
4821057b4bcdSMatthew G Knepley 
48221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4823057b4bcdSMatthew G Knepley @*/
4824d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4825d71ae5a4SJacob Faibussowitsch {
4826057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4827057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4828b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48299566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48309566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4831057b4bcdSMatthew G Knepley   dm->sf = sf;
48323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4833057b4bcdSMatthew G Knepley }
4834057b4bcdSMatthew G Knepley 
48354f37162bSMatthew G. Knepley /*@
4836bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
48374f37162bSMatthew G. Knepley 
48384f37162bSMatthew G. Knepley   Input Parameter:
4839bb7acecfSBarry Smith . dm - The `DM`
48404f37162bSMatthew G. Knepley 
48414f37162bSMatthew G. Knepley   Output Parameter:
4842bb7acecfSBarry Smith . sf - The `PetscSF`
48434f37162bSMatthew G. Knepley 
48444f37162bSMatthew G. Knepley   Level: intermediate
48454f37162bSMatthew G. Knepley 
4846bb7acecfSBarry Smith   Note:
4847bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48484f37162bSMatthew G. Knepley 
48491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48504f37162bSMatthew G. Knepley @*/
4851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4852d71ae5a4SJacob Faibussowitsch {
48534f37162bSMatthew G. Knepley   PetscFunctionBegin;
48544f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48554f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48564f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48584f37162bSMatthew G. Knepley }
48594f37162bSMatthew G. Knepley 
48604f37162bSMatthew G. Knepley /*@
48614f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48624f37162bSMatthew G. Knepley 
48634f37162bSMatthew G. Knepley   Input Parameters:
48644f37162bSMatthew G. Knepley + dm - The DM
48654f37162bSMatthew G. Knepley - sf - The PetscSF
48664f37162bSMatthew G. Knepley 
48674f37162bSMatthew G. Knepley   Level: intermediate
48684f37162bSMatthew G. Knepley 
48691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48704f37162bSMatthew G. Knepley @*/
4871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4872d71ae5a4SJacob Faibussowitsch {
48734f37162bSMatthew G. Knepley   PetscFunctionBegin;
48744f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48754f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48769566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48779566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48784f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48804f37162bSMatthew G. Knepley }
48814f37162bSMatthew G. Knepley 
4882d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4883d71ae5a4SJacob Faibussowitsch {
488434aa8a36SMatthew G. Knepley   PetscClassId id;
488534aa8a36SMatthew G. Knepley 
488634aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48879566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
488834aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48899566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
489034aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48919566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
489217c1d62eSMatthew G. Knepley   } else {
48939566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
489434aa8a36SMatthew G. Knepley   }
48953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
489634aa8a36SMatthew G. Knepley }
489734aa8a36SMatthew G. Knepley 
4898d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4899d71ae5a4SJacob Faibussowitsch {
490044a7f3ddSMatthew G. Knepley   RegionField *tmpr;
490144a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
490244a7f3ddSMatthew G. Knepley 
490344a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
49043ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
49059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
490644a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
49079371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
49089371c9d4SSatish Balay     tmpr[f].disc        = NULL;
49099371c9d4SSatish Balay     tmpr[f].label       = NULL;
49109371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
49119371c9d4SSatish Balay   }
49129566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
491344a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
491444a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
49153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
491644a7f3ddSMatthew G. Knepley }
491744a7f3ddSMatthew G. Knepley 
491844a7f3ddSMatthew G. Knepley /*@
491920f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
492044a7f3ddSMatthew G. Knepley 
492120f4b53cSBarry Smith   Logically Collective
492244a7f3ddSMatthew G. Knepley 
492344a7f3ddSMatthew G. Knepley   Input Parameter:
492420f4b53cSBarry Smith . dm - The `DM`
492544a7f3ddSMatthew G. Knepley 
492644a7f3ddSMatthew G. Knepley   Level: intermediate
492744a7f3ddSMatthew G. Knepley 
49281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
492944a7f3ddSMatthew G. Knepley @*/
4930d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4931d71ae5a4SJacob Faibussowitsch {
493244a7f3ddSMatthew G. Knepley   PetscInt f;
493344a7f3ddSMatthew G. Knepley 
493444a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
493544a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
493644a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
49379566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
49389566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
493944a7f3ddSMatthew G. Knepley   }
49409566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
494144a7f3ddSMatthew G. Knepley   dm->fields = NULL;
494244a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
49433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
494444a7f3ddSMatthew G. Knepley }
494544a7f3ddSMatthew G. Knepley 
4946689b5837SMatthew G. Knepley /*@
494720f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4948689b5837SMatthew G. Knepley 
494920f4b53cSBarry Smith   Not Collective
4950689b5837SMatthew G. Knepley 
4951689b5837SMatthew G. Knepley   Input Parameter:
495220f4b53cSBarry Smith . dm - The `DM`
4953689b5837SMatthew G. Knepley 
4954689b5837SMatthew G. Knepley   Output Parameter:
495560225df5SJacob Faibussowitsch . numFields - The number of fields
4956689b5837SMatthew G. Knepley 
4957689b5837SMatthew G. Knepley   Level: intermediate
4958689b5837SMatthew G. Knepley 
49591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4960689b5837SMatthew G. Knepley @*/
4961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4962d71ae5a4SJacob Faibussowitsch {
49630f21e855SMatthew G. Knepley   PetscFunctionBegin;
49640f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49654f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
496644a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4968af122d2aSMatthew G Knepley }
4969af122d2aSMatthew G Knepley 
4970689b5837SMatthew G. Knepley /*@
497120f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4972689b5837SMatthew G. Knepley 
497320f4b53cSBarry Smith   Logically Collective
4974689b5837SMatthew G. Knepley 
4975689b5837SMatthew G. Knepley   Input Parameters:
497620f4b53cSBarry Smith + dm        - The `DM`
497760225df5SJacob Faibussowitsch - numFields - The number of fields
4978689b5837SMatthew G. Knepley 
4979689b5837SMatthew G. Knepley   Level: intermediate
4980689b5837SMatthew G. Knepley 
49811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4982689b5837SMatthew G. Knepley @*/
4983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4984d71ae5a4SJacob Faibussowitsch {
49850f21e855SMatthew G. Knepley   PetscInt Nf, f;
4986af122d2aSMatthew G Knepley 
4987af122d2aSMatthew G Knepley   PetscFunctionBegin;
4988af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49899566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49900f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49910f21e855SMatthew G. Knepley     PetscContainer obj;
49920f21e855SMatthew G. Knepley 
49939566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49949566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49959566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4996af122d2aSMatthew G Knepley   }
49973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4998af122d2aSMatthew G Knepley }
4999af122d2aSMatthew G Knepley 
5000c1929be8SMatthew G. Knepley /*@
5001bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
5002c1929be8SMatthew G. Knepley 
500320f4b53cSBarry Smith   Not Collective
5004c1929be8SMatthew G. Knepley 
5005c1929be8SMatthew G. Knepley   Input Parameters:
5006bb7acecfSBarry Smith + dm - The `DM`
5007c1929be8SMatthew G. Knepley - f  - The field number
5008c1929be8SMatthew G. Knepley 
500944a7f3ddSMatthew G. Knepley   Output Parameters:
501020f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
501120f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
5012c1929be8SMatthew G. Knepley 
501344a7f3ddSMatthew G. Knepley   Level: intermediate
5014c1929be8SMatthew G. Knepley 
50151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
5016c1929be8SMatthew G. Knepley @*/
5017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
5018d71ae5a4SJacob Faibussowitsch {
5019af122d2aSMatthew G Knepley   PetscFunctionBegin;
5020af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
50214f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
50227a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
502344a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
5024bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
50253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5026decb47aaSMatthew G. Knepley }
5027decb47aaSMatthew G. Knepley 
5028083401c6SMatthew G. Knepley /* Does not clear the DS */
5029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5030d71ae5a4SJacob Faibussowitsch {
5031083401c6SMatthew G. Knepley   PetscFunctionBegin;
50329566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
50339566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
50349566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
5035083401c6SMatthew G. Knepley   dm->fields[f].label = label;
5036bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
50379566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5038835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
50393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5040083401c6SMatthew G. Knepley }
5041083401c6SMatthew G. Knepley 
5042ffeef943SBarry Smith /*@
5043bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5044bb7acecfSBarry Smith   the field numbering.
5045c1929be8SMatthew G. Knepley 
504620f4b53cSBarry Smith   Logically Collective
5047c1929be8SMatthew G. Knepley 
5048c1929be8SMatthew G. Knepley   Input Parameters:
5049bb7acecfSBarry Smith + dm    - The `DM`
5050c1929be8SMatthew G. Knepley . f     - The field number
505120f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5052bb7acecfSBarry Smith - disc  - The discretization object
5053c1929be8SMatthew G. Knepley 
505444a7f3ddSMatthew G. Knepley   Level: intermediate
5055c1929be8SMatthew G. Knepley 
50561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5057c1929be8SMatthew G. Knepley @*/
5058d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5059d71ae5a4SJacob Faibussowitsch {
5060decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5061decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5062e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5063bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50647a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5065bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5066bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50679566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
506944a7f3ddSMatthew G. Knepley }
507044a7f3ddSMatthew G. Knepley 
5071ffeef943SBarry Smith /*@
5072bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5073bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
507444a7f3ddSMatthew G. Knepley 
507520f4b53cSBarry Smith   Logically Collective
507644a7f3ddSMatthew G. Knepley 
507744a7f3ddSMatthew G. Knepley   Input Parameters:
5078bb7acecfSBarry Smith + dm    - The `DM`
507920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5080bb7acecfSBarry Smith - disc  - The discretization object
508144a7f3ddSMatthew G. Knepley 
508244a7f3ddSMatthew G. Knepley   Level: intermediate
508344a7f3ddSMatthew G. Knepley 
5084bb7acecfSBarry Smith   Notes:
5085bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5086bb7acecfSBarry Smith 
5087da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5088bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5089bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5090bb7acecfSBarry Smith 
50911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
509244a7f3ddSMatthew G. Knepley @*/
5093d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5094d71ae5a4SJacob Faibussowitsch {
509544a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
509644a7f3ddSMatthew G. Knepley 
509744a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
509844a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5099064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5100bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
51019566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
510244a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5103bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
51049566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5105835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
5106bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
51079566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
51083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5109af122d2aSMatthew G Knepley }
51106636e97aSMatthew G Knepley 
5111e5e52638SMatthew G. Knepley /*@
5112e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5113e0b68406SMatthew Knepley 
511420f4b53cSBarry Smith   Logically Collective
5115e0b68406SMatthew Knepley 
5116e0b68406SMatthew Knepley   Input Parameters:
5117bb7acecfSBarry Smith + dm          - The `DM`
5118e0b68406SMatthew Knepley . f           - The field index
5119bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5120e0b68406SMatthew Knepley 
5121e0b68406SMatthew Knepley   Level: intermediate
5122e0b68406SMatthew Knepley 
51231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5124e0b68406SMatthew Knepley @*/
5125d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5126d71ae5a4SJacob Faibussowitsch {
5127e0b68406SMatthew Knepley   PetscFunctionBegin;
512863a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5129e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
51303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5131e0b68406SMatthew Knepley }
5132e0b68406SMatthew Knepley 
5133e0b68406SMatthew Knepley /*@
5134e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5135e0b68406SMatthew Knepley 
513620f4b53cSBarry Smith   Not Collective
5137e0b68406SMatthew Knepley 
5138e0b68406SMatthew Knepley   Input Parameters:
5139bb7acecfSBarry Smith + dm - The `DM`
5140e0b68406SMatthew Knepley - f  - The field index
5141e0b68406SMatthew Knepley 
5142e0b68406SMatthew Knepley   Output Parameter:
5143e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5144e0b68406SMatthew Knepley 
5145e0b68406SMatthew Knepley   Level: intermediate
5146e0b68406SMatthew Knepley 
514760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5148e0b68406SMatthew Knepley @*/
5149d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5150d71ae5a4SJacob Faibussowitsch {
5151e0b68406SMatthew Knepley   PetscFunctionBegin;
515263a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5153e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5155e0b68406SMatthew Knepley }
5156e0b68406SMatthew Knepley 
5157e0b68406SMatthew Knepley /*@
5158bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5159e5e52638SMatthew G. Knepley 
516020f4b53cSBarry Smith   Collective
5161e5e52638SMatthew G. Knepley 
5162bb4b53efSMatthew G. Knepley   Input Parameters:
5163bb4b53efSMatthew G. Knepley + dm        - The `DM`
5164bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
5165bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
5166e5e52638SMatthew G. Knepley 
5167e5e52638SMatthew G. Knepley   Output Parameter:
5168bb7acecfSBarry Smith . newdm - The `DM`
5169e5e52638SMatthew G. Knepley 
5170e5e52638SMatthew G. Knepley   Level: advanced
5171e5e52638SMatthew G. Knepley 
51721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5173e5e52638SMatthew G. Knepley @*/
5174bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
5175d71ae5a4SJacob Faibussowitsch {
5176e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5177e5e52638SMatthew G. Knepley 
5178e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51793ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51809566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51819566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5182e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5183e5e52638SMatthew G. Knepley     DMLabel      label;
5184e5e52638SMatthew G. Knepley     PetscObject  field;
5185bb4b53efSMatthew G. Knepley     PetscClassId id;
518634aa8a36SMatthew G. Knepley     PetscBool    useCone, useClosure;
5187e5e52638SMatthew G. Knepley 
51889566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
5189bb4b53efSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(field, &id));
5190bb4b53efSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
5191bb4b53efSMatthew G. Knepley       PetscFE newfe;
5192bb4b53efSMatthew G. Knepley 
5193bb4b53efSMatthew G. Knepley       PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe));
5194bb4b53efSMatthew G. Knepley       PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe));
5195bb4b53efSMatthew G. Knepley       PetscCall(PetscFEDestroy(&newfe));
5196bb4b53efSMatthew G. Knepley     } else {
51979566063dSJacob Faibussowitsch       PetscCall(DMSetField(newdm, f, label, field));
5198bb4b53efSMatthew G. Knepley     }
51999566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
52009566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
520134aa8a36SMatthew G. Knepley   }
52023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
520334aa8a36SMatthew G. Knepley }
520434aa8a36SMatthew G. Knepley 
520534aa8a36SMatthew G. Knepley /*@
520634aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
520734aa8a36SMatthew G. Knepley 
520820f4b53cSBarry Smith   Not Collective
520934aa8a36SMatthew G. Knepley 
521034aa8a36SMatthew G. Knepley   Input Parameters:
521120f4b53cSBarry Smith + dm - The `DM` object
521220f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
521334aa8a36SMatthew G. Knepley 
5214d8d19677SJose E. Roman   Output Parameters:
521534aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
521634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
521734aa8a36SMatthew G. Knepley 
521834aa8a36SMatthew G. Knepley   Level: developer
521934aa8a36SMatthew G. Knepley 
522020f4b53cSBarry Smith   Notes:
522120f4b53cSBarry Smith .vb
522220f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
522320f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
522420f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
522520f4b53cSBarry Smith .ve
522620f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
522720f4b53cSBarry Smith 
52281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
522934aa8a36SMatthew G. Knepley @*/
5230d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5231d71ae5a4SJacob Faibussowitsch {
523234aa8a36SMatthew G. Knepley   PetscFunctionBegin;
523334aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52344f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
52354f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
523634aa8a36SMatthew G. Knepley   if (f < 0) {
523734aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
523834aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
523934aa8a36SMatthew G. Knepley   } else {
524034aa8a36SMatthew G. Knepley     PetscInt Nf;
524134aa8a36SMatthew G. Knepley 
52429566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52437a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
524434aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
524534aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
524634aa8a36SMatthew G. Knepley   }
52473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
524834aa8a36SMatthew G. Knepley }
524934aa8a36SMatthew G. Knepley 
525034aa8a36SMatthew G. Knepley /*@
525134aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
525234aa8a36SMatthew G. Knepley 
525320f4b53cSBarry Smith   Not Collective
525434aa8a36SMatthew G. Knepley 
525534aa8a36SMatthew G. Knepley   Input Parameters:
525620f4b53cSBarry Smith + dm         - The `DM` object
525734aa8a36SMatthew G. Knepley . f          - The field number
525834aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
525934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
526034aa8a36SMatthew G. Knepley 
526134aa8a36SMatthew G. Knepley   Level: developer
526234aa8a36SMatthew G. Knepley 
526320f4b53cSBarry Smith   Notes:
526420f4b53cSBarry Smith .vb
526520f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
526620f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
526720f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
526820f4b53cSBarry Smith .ve
526920f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
527020f4b53cSBarry Smith 
52711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
527234aa8a36SMatthew G. Knepley @*/
5273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5274d71ae5a4SJacob Faibussowitsch {
527534aa8a36SMatthew G. Knepley   PetscFunctionBegin;
527634aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
527734aa8a36SMatthew G. Knepley   if (f < 0) {
527834aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
527934aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
528034aa8a36SMatthew G. Knepley   } else {
528134aa8a36SMatthew G. Knepley     PetscInt Nf;
528234aa8a36SMatthew G. Knepley 
52839566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52847a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
528534aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
528634aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5287e5e52638SMatthew G. Knepley   }
52883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5289e5e52638SMatthew G. Knepley }
5290e5e52638SMatthew G. Knepley 
5291b0441da4SMatthew G. Knepley /*@
5292b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5293b0441da4SMatthew G. Knepley 
5294b0441da4SMatthew G. Knepley   Not collective
5295b0441da4SMatthew G. Knepley 
5296f899ff85SJose E. Roman   Input Parameter:
529720f4b53cSBarry Smith . dm - The `DM` object
5298b0441da4SMatthew G. Knepley 
5299d8d19677SJose E. Roman   Output Parameters:
5300b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5301b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5302b0441da4SMatthew G. Knepley 
5303b0441da4SMatthew G. Knepley   Level: developer
5304b0441da4SMatthew G. Knepley 
530520f4b53cSBarry Smith   Notes:
530620f4b53cSBarry Smith .vb
530720f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
530820f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
530920f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
531020f4b53cSBarry Smith .ve
531120f4b53cSBarry Smith 
53121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5313b0441da4SMatthew G. Knepley @*/
5314d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5315d71ae5a4SJacob Faibussowitsch {
5316b0441da4SMatthew G. Knepley   PetscInt Nf;
5317b0441da4SMatthew G. Knepley 
5318b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5319b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53204f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
53214f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
53229566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5323b0441da4SMatthew G. Knepley   if (!Nf) {
53249566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5325b0441da4SMatthew G. Knepley   } else {
53269566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5327b0441da4SMatthew G. Knepley   }
53283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5329b0441da4SMatthew G. Knepley }
5330b0441da4SMatthew G. Knepley 
5331b0441da4SMatthew G. Knepley /*@
5332b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5333b0441da4SMatthew G. Knepley 
533420f4b53cSBarry Smith   Not Collective
5335b0441da4SMatthew G. Knepley 
5336b0441da4SMatthew G. Knepley   Input Parameters:
533720f4b53cSBarry Smith + dm         - The `DM` object
5338b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5339b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5340b0441da4SMatthew G. Knepley 
5341b0441da4SMatthew G. Knepley   Level: developer
5342b0441da4SMatthew G. Knepley 
534320f4b53cSBarry Smith   Notes:
534420f4b53cSBarry Smith .vb
534520f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
534620f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
534720f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
534820f4b53cSBarry Smith .ve
534920f4b53cSBarry Smith 
53501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5351b0441da4SMatthew G. Knepley @*/
5352d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5353d71ae5a4SJacob Faibussowitsch {
5354b0441da4SMatthew G. Knepley   PetscInt Nf;
5355b0441da4SMatthew G. Knepley 
5356b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5357b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53589566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5359b0441da4SMatthew G. Knepley   if (!Nf) {
53609566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5361b0441da4SMatthew G. Knepley   } else {
53629566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5363e5e52638SMatthew G. Knepley   }
53643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5365e5e52638SMatthew G. Knepley }
5366e5e52638SMatthew G. Knepley 
5367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5368d71ae5a4SJacob Faibussowitsch {
5369799db056SMatthew G. Knepley   DM           plex;
5370799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5371799db056SMatthew G. Knepley   const char **names;
5372799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5373799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5374799db056SMatthew G. Knepley   size_t       len;
5375799db056SMatthew G. Knepley   MPI_Comm     comm;
5376799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5377783e2ec8SMatthew G. Knepley 
5378783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5379799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5380799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5381799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5382799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5383799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5384799db056SMatthew G. Knepley     PetscDS  dsBC;
5385799db056SMatthew G. Knepley     PetscInt numBd;
5386799db056SMatthew G. Knepley 
538707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5388799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5389799db056SMatthew G. Knepley     maxLabels += numBd;
5390799db056SMatthew G. Knepley   }
5391799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5392799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5393799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5394799db056SMatthew G. Knepley     PetscDS  dsBC;
5395799db056SMatthew G. Knepley     PetscInt numBd, bd;
5396799db056SMatthew G. Knepley 
539707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5398799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5399799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5400799db056SMatthew G. Knepley       DMLabel      label;
5401799db056SMatthew G. Knepley       PetscInt     field;
5402799db056SMatthew G. Knepley       PetscObject  obj;
5403799db056SMatthew G. Knepley       PetscClassId id;
5404799db056SMatthew G. Knepley 
5405799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
54069566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
54079566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5408799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
54099371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
54109371c9d4SSatish Balay         if (labels[l] == label) break;
5411799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5412783e2ec8SMatthew G. Knepley     }
5413799db056SMatthew G. Knepley   }
5414799db056SMatthew G. Knepley   /* Get label names */
5415799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5416799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
54179371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
54189371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
54199371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
54209371c9d4SSatish Balay   }
5421799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5422462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5423799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5424c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5425799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5426799db056SMatthew G. Knepley   /* Put all names on all processes */
5427799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5428799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5429799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5430799db056SMatthew G. Knepley   gNl = displs[size];
54319371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
54329371c9d4SSatish Balay     counts[p] *= gmaxLen;
54339371c9d4SSatish Balay     displs[p] *= gmaxLen;
54349371c9d4SSatish Balay   }
5435799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5436799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5437799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5438799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5439799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5440799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5441799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
54429371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
54435d6b2bfcSJames Wright       if (glabels[m] == glabels[gl]) goto next_label;
54449566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5445799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
54469566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5447799db056SMatthew G. Knepley     ++gl;
54485d6b2bfcSJames Wright   next_label:
54495d6b2bfcSJames Wright     continue;
5450783e2ec8SMatthew G. Knepley   }
5451799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5453783e2ec8SMatthew G. Knepley }
5454783e2ec8SMatthew G. Knepley 
5455d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5456d71ae5a4SJacob Faibussowitsch {
5457e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5458e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5459e5e52638SMatthew G. Knepley 
5460e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54613ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5463e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54649371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54659371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54669371c9d4SSatish Balay     tmpd[s].label  = NULL;
54679371c9d4SSatish Balay     tmpd[s].fields = NULL;
54689371c9d4SSatish Balay   }
54699566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5470e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5471e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5473e5e52638SMatthew G. Knepley }
5474e5e52638SMatthew G. Knepley 
5475e5e52638SMatthew G. Knepley /*@
547620f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5477e5e52638SMatthew G. Knepley 
547820f4b53cSBarry Smith   Not Collective
5479e5e52638SMatthew G. Knepley 
5480e5e52638SMatthew G. Knepley   Input Parameter:
548120f4b53cSBarry Smith . dm - The `DM`
5482e5e52638SMatthew G. Knepley 
5483e5e52638SMatthew G. Knepley   Output Parameter:
548420f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5485e5e52638SMatthew G. Knepley 
5486e5e52638SMatthew G. Knepley   Level: intermediate
5487e5e52638SMatthew G. Knepley 
54881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5489e5e52638SMatthew G. Knepley @*/
5490d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5491d71ae5a4SJacob Faibussowitsch {
5492e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5493e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
54944f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5495e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
54963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5497e5e52638SMatthew G. Knepley }
5498e5e52638SMatthew G. Knepley 
5499e5e52638SMatthew G. Knepley /*@
550020f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5501e5e52638SMatthew G. Knepley 
550220f4b53cSBarry Smith   Logically Collective
5503e5e52638SMatthew G. Knepley 
5504e5e52638SMatthew G. Knepley   Input Parameter:
550520f4b53cSBarry Smith . dm - The `DM`
5506e5e52638SMatthew G. Knepley 
5507e5e52638SMatthew G. Knepley   Level: intermediate
5508e5e52638SMatthew G. Knepley 
55091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5510e5e52638SMatthew G. Knepley @*/
5511d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5512d71ae5a4SJacob Faibussowitsch {
5513e5e52638SMatthew G. Knepley   PetscInt s;
5514e5e52638SMatthew G. Knepley 
5515e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5516e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5517e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
55189566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
551907218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
55209566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
55219566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5522e5e52638SMatthew G. Knepley   }
55239566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5524e5e52638SMatthew G. Knepley   dm->probs = NULL;
5525e5e52638SMatthew G. Knepley   dm->Nds   = 0;
55263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5527e5e52638SMatthew G. Knepley }
5528e5e52638SMatthew G. Knepley 
5529e5e52638SMatthew G. Knepley /*@
553020f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5531e5e52638SMatthew G. Knepley 
553220f4b53cSBarry Smith   Not Collective
5533e5e52638SMatthew G. Knepley 
5534e5e52638SMatthew G. Knepley   Input Parameter:
553520f4b53cSBarry Smith . dm - The `DM`
5536e5e52638SMatthew G. Knepley 
5537e5e52638SMatthew G. Knepley   Output Parameter:
553807218a29SMatthew G. Knepley . ds - The default `PetscDS`
5539e5e52638SMatthew G. Knepley 
5540e5e52638SMatthew G. Knepley   Level: intermediate
5541e5e52638SMatthew G. Knepley 
55421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5543e5e52638SMatthew G. Knepley @*/
554407218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5545d71ae5a4SJacob Faibussowitsch {
5546e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5547e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55484f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
554907218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
555007218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5552e5e52638SMatthew G. Knepley }
5553e5e52638SMatthew G. Knepley 
5554e5e52638SMatthew G. Knepley /*@
555520f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5556e5e52638SMatthew G. Knepley 
555720f4b53cSBarry Smith   Not Collective
5558e5e52638SMatthew G. Knepley 
5559e5e52638SMatthew G. Knepley   Input Parameters:
556020f4b53cSBarry Smith + dm    - The `DM`
556120f4b53cSBarry Smith - point - Cell for the `PetscDS`
5562e5e52638SMatthew G. Knepley 
556307218a29SMatthew G. Knepley   Output Parameters:
556407218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
556507218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5566e5e52638SMatthew G. Knepley 
5567e5e52638SMatthew G. Knepley   Level: developer
5568e5e52638SMatthew G. Knepley 
55691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5570e5e52638SMatthew G. Knepley @*/
557107218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5572d71ae5a4SJacob Faibussowitsch {
557307218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5574e5e52638SMatthew G. Knepley   PetscInt s;
5575e5e52638SMatthew G. Knepley 
5576e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5577e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55784f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55794f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
558063a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
558107218a29SMatthew G. Knepley   if (ds) *ds = NULL;
558207218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5583e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5584e5e52638SMatthew G. Knepley     PetscInt val;
5585e5e52638SMatthew G. Knepley 
55869371c9d4SSatish Balay     if (!dm->probs[s].label) {
558707218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55889371c9d4SSatish Balay     } else {
55899566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55909371c9d4SSatish Balay       if (val >= 0) {
559107218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
559207218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
55939371c9d4SSatish Balay         break;
55949371c9d4SSatish Balay       }
5595e5e52638SMatthew G. Knepley     }
5596e5e52638SMatthew G. Knepley   }
559707218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
55983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5599e5e52638SMatthew G. Knepley }
5600e5e52638SMatthew G. Knepley 
5601e5e52638SMatthew G. Knepley /*@
560220f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5603e5e52638SMatthew G. Knepley 
560420f4b53cSBarry Smith   Not Collective
5605e5e52638SMatthew G. Knepley 
5606e5e52638SMatthew G. Knepley   Input Parameters:
560720f4b53cSBarry Smith + dm    - The `DM`
560820f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5609e5e52638SMatthew G. Knepley 
5610b3cf3223SMatthew G. Knepley   Output Parameters:
561120f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
561207218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
561307218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5614e5e52638SMatthew G. Knepley 
5615e5e52638SMatthew G. Knepley   Level: advanced
5616e5e52638SMatthew G. Knepley 
561720f4b53cSBarry Smith   Note:
561820f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
561920f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
562007218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
562120f4b53cSBarry Smith 
56221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5623e5e52638SMatthew G. Knepley @*/
562407218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5625d71ae5a4SJacob Faibussowitsch {
5626e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5627e5e52638SMatthew G. Knepley 
5628e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5629e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5630e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
56319371c9d4SSatish Balay   if (fields) {
56324f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
56339371c9d4SSatish Balay     *fields = NULL;
56349371c9d4SSatish Balay   }
56359371c9d4SSatish Balay   if (ds) {
56364f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
56379371c9d4SSatish Balay     *ds = NULL;
56389371c9d4SSatish Balay   }
563907218a29SMatthew G. Knepley   if (dsIn) {
56404f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
564107218a29SMatthew G. Knepley     *dsIn = NULL;
564207218a29SMatthew G. Knepley   }
5643e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5644154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5645b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5646b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
564707218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56483ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5649b3cf3223SMatthew G. Knepley     }
5650e5e52638SMatthew G. Knepley   }
56513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5652e5e52638SMatthew G. Knepley }
5653e5e52638SMatthew G. Knepley 
5654e5e52638SMatthew G. Knepley /*@
5655bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5656083401c6SMatthew G. Knepley 
565720f4b53cSBarry Smith   Collective
5658083401c6SMatthew G. Knepley 
5659083401c6SMatthew G. Knepley   Input Parameters:
5660bb7acecfSBarry Smith + dm     - The `DM`
566120f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
566207218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
566307218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
566407218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5665083401c6SMatthew G. Knepley 
566620f4b53cSBarry Smith   Level: advanced
566720f4b53cSBarry Smith 
5668bb7acecfSBarry Smith   Note:
5669bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5670083401c6SMatthew G. Knepley   the fields argument is ignored.
5671083401c6SMatthew G. Knepley 
56721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5673083401c6SMatthew G. Knepley @*/
567407218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5675d71ae5a4SJacob Faibussowitsch {
5676083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5677083401c6SMatthew G. Knepley 
5678083401c6SMatthew G. Knepley   PetscFunctionBegin;
5679083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5680083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
568107218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5682064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
568307218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5684083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5685083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56869566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
568707218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5688083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
568907218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56903ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5691083401c6SMatthew G. Knepley     }
5692083401c6SMatthew G. Knepley   }
56939566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
56949566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56959566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
56969566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
569707218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5698083401c6SMatthew G. Knepley   if (!label) {
5699083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5700083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5701083401c6SMatthew G. Knepley     Nds = 0;
5702083401c6SMatthew G. Knepley   }
5703083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5704083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5705083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
570607218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
57073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5708083401c6SMatthew G. Knepley }
5709083401c6SMatthew G. Knepley 
5710083401c6SMatthew G. Knepley /*@
571120f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5712e5e52638SMatthew G. Knepley 
571320f4b53cSBarry Smith   Not Collective
5714e5e52638SMatthew G. Knepley 
5715e5e52638SMatthew G. Knepley   Input Parameters:
571620f4b53cSBarry Smith + dm  - The `DM`
5717e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5718e5e52638SMatthew G. Knepley 
5719e5e52638SMatthew G. Knepley   Output Parameters:
572020f4b53cSBarry Smith + label  - The region label, or `NULL`
572120f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
572207218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
572307218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5724e5e52638SMatthew G. Knepley 
5725e5e52638SMatthew G. Knepley   Level: advanced
5726e5e52638SMatthew G. Knepley 
57271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5728e5e52638SMatthew G. Knepley @*/
572907218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5730d71ae5a4SJacob Faibussowitsch {
5731e5e52638SMatthew G. Knepley   PetscInt Nds;
5732e5e52638SMatthew G. Knepley 
5733e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5734e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57359566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
573663a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5737e5e52638SMatthew G. Knepley   if (label) {
57384f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5739e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5740e5e52638SMatthew G. Knepley   }
5741b3cf3223SMatthew G. Knepley   if (fields) {
57424f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5743b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5744b3cf3223SMatthew G. Knepley   }
5745e5e52638SMatthew G. Knepley   if (ds) {
57464f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5747e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5748e5e52638SMatthew G. Knepley   }
574907218a29SMatthew G. Knepley   if (dsIn) {
57504f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
575107218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
575207218a29SMatthew G. Knepley   }
57533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5754e5e52638SMatthew G. Knepley }
5755e5e52638SMatthew G. Knepley 
5756e5e52638SMatthew G. Knepley /*@
575720f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5758e5e52638SMatthew G. Knepley 
575920f4b53cSBarry Smith   Not Collective
5760e5e52638SMatthew G. Knepley 
5761e5e52638SMatthew G. Knepley   Input Parameters:
576220f4b53cSBarry Smith + dm     - The `DM`
5763083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
576420f4b53cSBarry Smith . label  - The region label, or `NULL`
576507218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
576607218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
576707218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5768e5e52638SMatthew G. Knepley 
5769e5e52638SMatthew G. Knepley   Level: advanced
5770e5e52638SMatthew G. Knepley 
57711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5772e5e52638SMatthew G. Knepley @*/
577307218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5774d71ae5a4SJacob Faibussowitsch {
5775083401c6SMatthew G. Knepley   PetscInt Nds;
5776e5e52638SMatthew G. Knepley 
5777e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5778e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5779ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57809566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
578163a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57829566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57839566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5784083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5785083401c6SMatthew G. Knepley   if (fields) {
5786083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57879566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57889566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5789083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5790e5e52638SMatthew G. Knepley   }
5791083401c6SMatthew G. Knepley   if (ds) {
5792083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
57939566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
57949566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5795083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5796083401c6SMatthew G. Knepley   }
579707218a29SMatthew G. Knepley   if (dsIn) {
579807218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
579907218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
580007218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
580107218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
580207218a29SMatthew G. Knepley   }
58033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5804e5e52638SMatthew G. Knepley }
5805e5e52638SMatthew G. Knepley 
5806e5e52638SMatthew G. Knepley /*@
580720f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
58081d3af9e0SMatthew G. Knepley 
580920f4b53cSBarry Smith   Not Collective
58101d3af9e0SMatthew G. Knepley 
58111d3af9e0SMatthew G. Knepley   Input Parameters:
581220f4b53cSBarry Smith + dm - The `DM`
581320f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
58141d3af9e0SMatthew G. Knepley 
58151d3af9e0SMatthew G. Knepley   Output Parameter:
58161d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
58171d3af9e0SMatthew G. Knepley 
58181d3af9e0SMatthew G. Knepley   Level: advanced
58191d3af9e0SMatthew G. Knepley 
58201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
58211d3af9e0SMatthew G. Knepley @*/
5822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5823d71ae5a4SJacob Faibussowitsch {
58241d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
58251d3af9e0SMatthew G. Knepley 
58261d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
58271d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58281d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
58294f572ea9SToby Isaac   PetscAssertPointer(num, 3);
58309566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
58319371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
58329371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
58331d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
58341d3af9e0SMatthew G. Knepley   else *num = n;
58353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58361d3af9e0SMatthew G. Knepley }
58371d3af9e0SMatthew G. Knepley 
5838cc4c1da9SBarry Smith /*@
5839bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
58402df84da0SMatthew G. Knepley 
584120f4b53cSBarry Smith   Not Collective
58422df84da0SMatthew G. Knepley 
5843f1a722f8SMatthew G. Knepley   Input Parameters:
5844bb7acecfSBarry Smith + dm     - The `DM`
58452df84da0SMatthew G. Knepley . Nc     - The number of components for the field
584620f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5847bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58482df84da0SMatthew G. Knepley 
58492df84da0SMatthew G. Knepley   Output Parameter:
5850bb7acecfSBarry Smith . fem - The `PetscFE`
58512df84da0SMatthew G. Knepley 
585220f4b53cSBarry Smith   Level: intermediate
585320f4b53cSBarry Smith 
5854bb7acecfSBarry Smith   Note:
5855bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58562df84da0SMatthew G. Knepley 
58571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58582df84da0SMatthew G. Knepley @*/
5859d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5860d71ae5a4SJacob Faibussowitsch {
58612df84da0SMatthew G. Knepley   DMPolytopeType ct;
58622df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58632df84da0SMatthew G. Knepley 
58642df84da0SMatthew G. Knepley   PetscFunctionBegin;
58652df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58662df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58674f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58682df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58694f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58709566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58719566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58729566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58739566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58752df84da0SMatthew G. Knepley }
58762df84da0SMatthew G. Knepley 
58771d3af9e0SMatthew G. Knepley /*@
5878bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5879e5e52638SMatthew G. Knepley 
588020f4b53cSBarry Smith   Collective
5881e5e52638SMatthew G. Knepley 
5882e5e52638SMatthew G. Knepley   Input Parameter:
5883bb7acecfSBarry Smith . dm - The `DM`
5884e5e52638SMatthew G. Knepley 
588520f4b53cSBarry Smith   Options Database Key:
5886bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
588745480ffeSMatthew G. Knepley 
588820f4b53cSBarry Smith   Level: intermediate
588920f4b53cSBarry Smith 
58901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5891e5e52638SMatthew G. Knepley @*/
5892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5893d71ae5a4SJacob Faibussowitsch {
5894e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5895083401c6SMatthew G. Knepley   PetscDS   dsDef;
5896083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5897f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5898f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5899e5e52638SMatthew G. Knepley 
5900e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5901e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
59023ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
59039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
59049566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5905083401c6SMatthew G. Knepley   /* Determine how many regions we have */
59069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5907083401c6SMatthew G. Knepley   Nl   = 0;
5908083401c6SMatthew G. Knepley   Ndef = 0;
5909083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5910083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5911083401c6SMatthew G. Knepley     PetscInt l;
5912083401c6SMatthew G. Knepley 
5913f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5914f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5915f918ec44SMatthew G. Knepley     {
5916f918ec44SMatthew G. Knepley       PetscClassId id;
5917f918ec44SMatthew G. Knepley 
59189566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5919f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5920f918ec44SMatthew G. Knepley         Ceed ceed;
5921f918ec44SMatthew G. Knepley 
59229566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
59239566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5924f918ec44SMatthew G. Knepley       }
5925f918ec44SMatthew G. Knepley     }
5926f918ec44SMatthew G. Knepley #endif
59279371c9d4SSatish Balay     if (!label) {
59289371c9d4SSatish Balay       ++Ndef;
59299371c9d4SSatish Balay       continue;
59309371c9d4SSatish Balay     }
59319371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
59329371c9d4SSatish Balay       if (label == labelSet[l]) break;
5933083401c6SMatthew G. Knepley     if (l < Nl) continue;
5934083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5935083401c6SMatthew G. Knepley   }
5936083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
593707218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5938083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5939b3cf3223SMatthew G. Knepley     IS        fields;
5940b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5941b3cf3223SMatthew G. Knepley 
59429371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59439371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
59447a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
59459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59469371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59479371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59489566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59499566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59509566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59519566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
595288f0c812SMatthew G. Knepley 
59539566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
595407218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59559566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59569566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59572df9ee95SMatthew G. Knepley   }
595807218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59599566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5960083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5961083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59620122748bSMatthew G. Knepley     DM              plex;
5963083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5964083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5965083401c6SMatthew G. Knepley     PetscInt       *fields;
5966083401c6SMatthew G. Knepley     const PetscInt *cells;
5967083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59680122748bSMatthew G. Knepley 
59699566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59709566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59719566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59729566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59735fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5974083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5975083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5976083401c6SMatthew G. Knepley       IS      pointIS;
5977083401c6SMatthew G. Knepley 
59789566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59799566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59809566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59819566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5982083401c6SMatthew G. Knepley     }
59839566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5984083401c6SMatthew G. Knepley 
59859566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
59869566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
59879566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
59889566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
59899566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
59909566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
59919566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5992083401c6SMatthew G. Knepley 
59939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
59949371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
59959371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
59969566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
59979566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
59989566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
59999566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
6000083401c6SMatthew G. Knepley 
60019566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
600207218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
60039566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
60049566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
60059566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
60069566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
60079566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
6008083401c6SMatthew G. Knepley   }
6009083401c6SMatthew G. Knepley   /* Create label DSes
6010083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
6011083401c6SMatthew G. Knepley   */
6012083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
6013083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
6014083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
601507218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
6016083401c6SMatthew G. Knepley     IS        fields;
6017083401c6SMatthew G. Knepley     PetscInt *fld, nf;
6018083401c6SMatthew G. Knepley 
60199566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
60209371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60219371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
60229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
60239371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60249371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
60259566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
60269566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
60279566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
60289566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
60299566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
6030083401c6SMatthew G. Knepley     {
6031083401c6SMatthew G. Knepley       DMPolytopeType ct;
6032083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
60335fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
60340122748bSMatthew G. Knepley 
60359566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
6036665f567fSMatthew G. Knepley       if (lStart >= 0) {
60379566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
6038412e9a14SMatthew G. Knepley         switch (ct) {
6039412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
6040412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
6041412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
6042d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
6043d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
6044d71ae5a4SJacob Faibussowitsch           break;
6045d71ae5a4SJacob Faibussowitsch         default:
6046d71ae5a4SJacob Faibussowitsch           break;
6047412e9a14SMatthew G. Knepley         }
6048665f567fSMatthew G. Knepley       }
6049462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
605007218a29SMatthew G. Knepley       if (isCohesive) {
605107218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
605207218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
605307218a29SMatthew G. Knepley       }
60545fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60555fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60565fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60579566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60589566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
605907218a29SMatthew G. Knepley             if (dsIn) {
606007218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
606107218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
606207218a29SMatthew G. Knepley             }
60635fedec97SMatthew G. Knepley           }
60645fedec97SMatthew G. Knepley           ++nf;
60655fedec97SMatthew G. Knepley         }
60665fedec97SMatthew G. Knepley       }
6067e5e52638SMatthew G. Knepley     }
606807218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
606907218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60709566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
607107218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6072e5e52638SMatthew G. Knepley   }
60739566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6074e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6075083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6076083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
607707218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6078083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6079083401c6SMatthew G. Knepley     const PetscInt *fld;
60805fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60815fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6082e5e52638SMatthew G. Knepley 
60839566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60849566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
60859566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
60869566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6087083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6088083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
60895fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6090e5e52638SMatthew G. Knepley       PetscClassId id;
6091e5e52638SMatthew G. Knepley 
60925fedec97SMatthew G. Knepley       /* Handle DS with no fields */
60939566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
60945fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
609507218a29SMatthew G. Knepley       if (isCohesive) {
609607218a29SMatthew G. Knepley         if (!isCohesiveField) {
609707218a29SMatthew G. Knepley           PetscObject bdDisc;
609807218a29SMatthew G. Knepley 
609907218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
610007218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
610107218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
610207218a29SMatthew G. Knepley         } else {
61039566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
610407218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
610507218a29SMatthew G. Knepley         }
610607218a29SMatthew G. Knepley       } else {
610707218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
610807218a29SMatthew G. Knepley       }
6109083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
61109566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6111e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6112e5e52638SMatthew G. Knepley     }
61139566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6114e5e52638SMatthew G. Knepley   }
6115f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
61169566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6117f9244615SMatthew G. Knepley   if (flg) {
61183b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
61193b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
612007218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
61213b4aee56SMatthew G. Knepley       PetscInt Nf, f;
61223b4aee56SMatthew G. Knepley 
61239566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
612407218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
612507218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
612607218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
612707218a29SMatthew G. Knepley       }
61283b4aee56SMatthew G. Knepley     }
6129f9244615SMatthew G. Knepley   }
6130e5e52638SMatthew G. Knepley   /* Setup DSes */
6131e5e52638SMatthew G. Knepley   if (doSetup) {
613207218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6133cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6134cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6135cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6136cf1363e4SMatthew G. Knepley       }
613707218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
613807218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
613907218a29SMatthew G. Knepley     }
6140e5e52638SMatthew G. Knepley   }
61413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6142e5e52638SMatthew G. Knepley }
6143e5e52638SMatthew G. Knepley 
6144e5e52638SMatthew G. Knepley /*@
6145d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6146d2b2dc1eSMatthew G. Knepley 
6147d2b2dc1eSMatthew G. Knepley   Input Parameters:
6148d2b2dc1eSMatthew G. Knepley + dm     - The DM
6149d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6150d2b2dc1eSMatthew G. Knepley 
6151d2b2dc1eSMatthew G. Knepley   Level: developer
6152d2b2dc1eSMatthew G. Knepley 
6153d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6154d2b2dc1eSMatthew G. Knepley @*/
6155d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6156d2b2dc1eSMatthew G. Knepley {
6157d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6158d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6159d2b2dc1eSMatthew G. Knepley 
6160d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6161d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6162d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6163d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6164d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6165d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6166d2b2dc1eSMatthew G. Knepley 
6167d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6168d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6169d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6170d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6171d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6172d2b2dc1eSMatthew G. Knepley 
6173d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6174d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6175d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6176d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6177d2b2dc1eSMatthew G. Knepley   }
6178d2b2dc1eSMatthew G. Knepley   if (tensor) {
6179d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6180d2b2dc1eSMatthew G. Knepley   } else {
6181d2b2dc1eSMatthew G. Knepley     PetscSection s;
6182d2b2dc1eSMatthew G. Knepley 
6183d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6184d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6185d2b2dc1eSMatthew G. Knepley   }
6186d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6187d2b2dc1eSMatthew G. Knepley }
6188d2b2dc1eSMatthew G. Knepley 
6189d2b2dc1eSMatthew G. Knepley /*@
6190bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
61917f96f943SMatthew G. Knepley 
619220f4b53cSBarry Smith   Collective
6193f2cacb80SMatthew G. Knepley 
61947f96f943SMatthew G. Knepley   Input Parameters:
6195bb7acecfSBarry Smith + dm   - The `DM`
61967f96f943SMatthew G. Knepley - time - The time
61977f96f943SMatthew G. Knepley 
61987f96f943SMatthew G. Knepley   Output Parameters:
619920f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
620020f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
620120f4b53cSBarry Smith 
620220f4b53cSBarry Smith   Level: developer
62037f96f943SMatthew G. Knepley 
6204bb7acecfSBarry Smith   Note:
6205bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
62067f96f943SMatthew G. Knepley 
62071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
62087f96f943SMatthew G. Knepley @*/
6209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6210d71ae5a4SJacob Faibussowitsch {
62117f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
62127f96f943SMatthew G. Knepley   void   **ectxs;
6213f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
62147f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
62157f96f943SMatthew G. Knepley 
62167f96f943SMatthew G. Knepley   PetscFunctionBegin;
6217f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6218f60fa741SMatthew G. Knepley   if (u) {
6219f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6220f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6221f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6222f60fa741SMatthew G. Knepley   }
6223f60fa741SMatthew G. Knepley   if (u_t) {
6224f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6225f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6226f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6227f60fa741SMatthew G. Knepley   }
62289566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
62299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
62309566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62317f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
62327f96f943SMatthew G. Knepley     PetscDS         ds;
62337f96f943SMatthew G. Knepley     DMLabel         label;
62347f96f943SMatthew G. Knepley     IS              fieldIS;
62357f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
62367f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
62377f96f943SMatthew G. Knepley 
623807218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
62399566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
62409566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
62419566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
62429566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6243f2cacb80SMatthew G. Knepley     if (u) {
6244f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6245f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6246f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
62477f96f943SMatthew G. Knepley     }
6248f2cacb80SMatthew G. Knepley     if (u_t) {
62499566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62509566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6251f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6252f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6253f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6254f2cacb80SMatthew G. Knepley     }
62559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6256f2cacb80SMatthew G. Knepley   }
6257f2cacb80SMatthew G. Knepley   if (u) {
62589566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62599566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6260f2cacb80SMatthew G. Knepley   }
6261f2cacb80SMatthew G. Knepley   if (u_t) {
62629566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62639566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6264f2cacb80SMatthew G. Knepley   }
62659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6266f60fa741SMatthew G. Knepley   if (u) {
6267f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6268f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6269f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6270f60fa741SMatthew G. Knepley   }
6271f60fa741SMatthew G. Knepley   if (u_t) {
6272f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6273f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6274f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6275f60fa741SMatthew G. Knepley   }
62763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62777f96f943SMatthew G. Knepley }
62787f96f943SMatthew G. Knepley 
6279bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn)
6280d71ae5a4SJacob Faibussowitsch {
628107218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
628245480ffeSMatthew G. Knepley 
628345480ffeSMatthew G. Knepley   PetscFunctionBegin;
62849566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6285bb4b53efSMatthew G. Knepley   PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew));
628607218a29SMatthew G. Knepley   if (dsIn) {
628707218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6288bb4b53efSMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew));
628945480ffeSMatthew G. Knepley   }
629007218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
62919566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
629207218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
62933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
629445480ffeSMatthew G. Knepley }
629545480ffeSMatthew G. Knepley 
62967f96f943SMatthew G. Knepley /*@
6297bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6298e5e52638SMatthew G. Knepley 
629920f4b53cSBarry Smith   Collective
6300e5e52638SMatthew G. Knepley 
6301bb4b53efSMatthew G. Knepley   Input Parameters:
6302bb4b53efSMatthew G. Knepley + dm        - The `DM`
6303bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
6304bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
6305e5e52638SMatthew G. Knepley 
6306e5e52638SMatthew G. Knepley   Output Parameter:
6307bb7acecfSBarry Smith . newdm - The `DM`
6308e5e52638SMatthew G. Knepley 
6309e5e52638SMatthew G. Knepley   Level: advanced
6310e5e52638SMatthew G. Knepley 
63111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6312e5e52638SMatthew G. Knepley @*/
6313bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
6314d71ae5a4SJacob Faibussowitsch {
6315e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6316e5e52638SMatthew G. Knepley 
6317e5e52638SMatthew G. Knepley   PetscFunctionBegin;
63183ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
63199566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
63209566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6321e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6322e5e52638SMatthew G. Knepley     DMLabel  label;
6323b3cf3223SMatthew G. Knepley     IS       fields;
632407218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6325783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6326e5e52638SMatthew G. Knepley 
632707218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6328b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6329bb4b53efSMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn));
6330d5b43468SJose E. Roman     /* Complete new labels in the new DS */
633107218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
63329566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6333783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6334b8025e53SMatthew G. Knepley       PetscWeakForm wf;
633545480ffeSMatthew G. Knepley       DMLabel       label;
6336783e2ec8SMatthew G. Knepley       PetscInt      field;
6337783e2ec8SMatthew G. Knepley 
63389566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
63399566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6340783e2ec8SMatthew G. Knepley     }
6341e5e52638SMatthew G. Knepley   }
6342799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
63433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6344e5e52638SMatthew G. Knepley }
6345e5e52638SMatthew G. Knepley 
6346e5e52638SMatthew G. Knepley /*@
6347bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6348e5e52638SMatthew G. Knepley 
634920f4b53cSBarry Smith   Collective
6350e5e52638SMatthew G. Knepley 
6351e5e52638SMatthew G. Knepley   Input Parameter:
6352bb7acecfSBarry Smith . dm - The `DM`
6353e5e52638SMatthew G. Knepley 
6354e5e52638SMatthew G. Knepley   Output Parameter:
6355bb7acecfSBarry Smith . newdm - The `DM`
6356e5e52638SMatthew G. Knepley 
6357e5e52638SMatthew G. Knepley   Level: advanced
6358e5e52638SMatthew G. Knepley 
635973ff1848SBarry Smith   Developer Note:
6360bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6361bb7acecfSBarry Smith 
63621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6363e5e52638SMatthew G. Knepley @*/
6364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6365d71ae5a4SJacob Faibussowitsch {
6366e5e52638SMatthew G. Knepley   PetscFunctionBegin;
6367bb4b53efSMatthew G. Knepley   PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
6368bb4b53efSMatthew G. Knepley   PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
63693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6370e5e52638SMatthew G. Knepley }
6371e5e52638SMatthew G. Knepley 
6372c73cfb54SMatthew G. Knepley /*@
6373bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6374c73cfb54SMatthew G. Knepley 
637520f4b53cSBarry Smith   Not Collective
6376c73cfb54SMatthew G. Knepley 
6377c73cfb54SMatthew G. Knepley   Input Parameter:
6378bb7acecfSBarry Smith . dm - The `DM`
6379c73cfb54SMatthew G. Knepley 
6380c73cfb54SMatthew G. Knepley   Output Parameter:
6381c73cfb54SMatthew G. Knepley . dim - The topological dimension
6382c73cfb54SMatthew G. Knepley 
6383c73cfb54SMatthew G. Knepley   Level: beginner
6384c73cfb54SMatthew G. Knepley 
63851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6386c73cfb54SMatthew G. Knepley @*/
6387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6388d71ae5a4SJacob Faibussowitsch {
6389c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6390c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63914f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6392c73cfb54SMatthew G. Knepley   *dim = dm->dim;
63933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6394c73cfb54SMatthew G. Knepley }
6395c73cfb54SMatthew G. Knepley 
6396c73cfb54SMatthew G. Knepley /*@
6397bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6398c73cfb54SMatthew G. Knepley 
639920f4b53cSBarry Smith   Collective
6400c73cfb54SMatthew G. Knepley 
6401c73cfb54SMatthew G. Knepley   Input Parameters:
6402bb7acecfSBarry Smith + dm  - The `DM`
6403c73cfb54SMatthew G. Knepley - dim - The topological dimension
6404c73cfb54SMatthew G. Knepley 
6405c73cfb54SMatthew G. Knepley   Level: beginner
6406c73cfb54SMatthew G. Knepley 
64071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6408c73cfb54SMatthew G. Knepley @*/
6409d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6410d71ae5a4SJacob Faibussowitsch {
6411e5e52638SMatthew G. Knepley   PetscDS  ds;
641245480ffeSMatthew G. Knepley   PetscInt Nds, n;
6413f17e8794SMatthew G. Knepley 
6414c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6415c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6416c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6417c73cfb54SMatthew G. Knepley   dm->dim = dim;
6418d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
64199566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
642045480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
642107218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
64229566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
642345480ffeSMatthew G. Knepley     }
6424d17bd122SMatthew G. Knepley   }
64253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6426c73cfb54SMatthew G. Knepley }
6427c73cfb54SMatthew G. Knepley 
6428793f3fe5SMatthew G. Knepley /*@
6429793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6430793f3fe5SMatthew G. Knepley 
643120f4b53cSBarry Smith   Collective
6432793f3fe5SMatthew G. Knepley 
6433793f3fe5SMatthew G. Knepley   Input Parameters:
6434bb7acecfSBarry Smith + dm  - the `DM`
6435793f3fe5SMatthew G. Knepley - dim - the dimension
6436793f3fe5SMatthew G. Knepley 
6437793f3fe5SMatthew G. Knepley   Output Parameters:
6438793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6439aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6440793f3fe5SMatthew G. Knepley 
644120f4b53cSBarry Smith   Level: intermediate
644220f4b53cSBarry Smith 
6443793f3fe5SMatthew G. Knepley   Note:
6444793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6445a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6446793f3fe5SMatthew G. Knepley   then the interval is empty.
6447793f3fe5SMatthew G. Knepley 
64481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6449793f3fe5SMatthew G. Knepley @*/
6450d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6451d71ae5a4SJacob Faibussowitsch {
6452793f3fe5SMatthew G. Knepley   PetscInt d;
6453793f3fe5SMatthew G. Knepley 
6454793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6455793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64569566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64577a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6458dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6460793f3fe5SMatthew G. Knepley }
6461793f3fe5SMatthew G. Knepley 
64626636e97aSMatthew G Knepley /*@
6463bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6464f4d763aaSMatthew G. Knepley 
646520f4b53cSBarry Smith   Collective
64668f700142SStefano Zampini 
6467f4d763aaSMatthew G. Knepley   Input Parameter:
6468bb7acecfSBarry Smith . dm - The original `DM`
6469f4d763aaSMatthew G. Knepley 
6470f4d763aaSMatthew G. Knepley   Output Parameter:
6471bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6472f4d763aaSMatthew G. Knepley 
6473f4d763aaSMatthew G. Knepley   Level: intermediate
6474f4d763aaSMatthew G. Knepley 
6475bb7acecfSBarry Smith   Note:
6476bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6477bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6478bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6479bb7acecfSBarry Smith 
64801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6481f4d763aaSMatthew G. Knepley @*/
6482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6483d71ae5a4SJacob Faibussowitsch {
6484c26acbdeSMatthew G. Knepley   PetscSection section;
6485eb9d3e4dSMatthew G. Knepley   IS           perm;
6486eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
648714f150ffSMatthew G. Knepley 
648814f150ffSMatthew G. Knepley   PetscFunctionBegin;
648914f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64904f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
64919566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
64929566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6493eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
6494eb9d3e4dSMatthew G. Knepley   newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE;
6495462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6496eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6497c26acbdeSMatthew G. Knepley     *odm = dm;
64983ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6499c26acbdeSMatthew G. Knepley   }
650014f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6501c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
650214f150ffSMatthew G. Knepley     PetscSF      sf;
6503eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
650414f150ffSMatthew G. Knepley 
65059566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
65069566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
65079566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
65089566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
65099566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
65109566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6511eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
65129566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
65139566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
651414f150ffSMatthew G. Knepley   }
651514f150ffSMatthew G. Knepley   *odm = dm->dmBC;
65163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
651714f150ffSMatthew G. Knepley }
6518f4d763aaSMatthew G. Knepley 
6519f4d763aaSMatthew G. Knepley /*@
6520cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6521f4d763aaSMatthew G. Knepley 
6522f4d763aaSMatthew G. Knepley   Input Parameter:
6523bb7acecfSBarry Smith . dm - The original `DM`
6524f4d763aaSMatthew G. Knepley 
6525cdb7a50dSMatthew G. Knepley   Output Parameters:
6526cdb7a50dSMatthew G. Knepley + num - The output sequence number
6527cdb7a50dSMatthew G. Knepley - val - The output sequence value
6528f4d763aaSMatthew G. Knepley 
6529f4d763aaSMatthew G. Knepley   Level: intermediate
6530f4d763aaSMatthew G. Knepley 
6531bb7acecfSBarry Smith   Note:
6532bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6533bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6534bb7acecfSBarry Smith 
653573ff1848SBarry Smith   Developer Note:
6536bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6537bb7acecfSBarry Smith   not directly related to the `DM`.
6538f4d763aaSMatthew G. Knepley 
65391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6540f4d763aaSMatthew G. Knepley @*/
6541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6542d71ae5a4SJacob Faibussowitsch {
6543f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6544f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65459371c9d4SSatish Balay   if (num) {
65464f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65479371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65489371c9d4SSatish Balay   }
65499371c9d4SSatish Balay   if (val) {
65504f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65519371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65529371c9d4SSatish Balay   }
65533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6554f4d763aaSMatthew G. Knepley }
6555f4d763aaSMatthew G. Knepley 
6556f4d763aaSMatthew G. Knepley /*@
6557cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6558f4d763aaSMatthew G. Knepley 
6559f4d763aaSMatthew G. Knepley   Input Parameters:
6560bb7acecfSBarry Smith + dm  - The original `DM`
6561cdb7a50dSMatthew G. Knepley . num - The output sequence number
6562cdb7a50dSMatthew G. Knepley - val - The output sequence value
6563f4d763aaSMatthew G. Knepley 
6564f4d763aaSMatthew G. Knepley   Level: intermediate
6565f4d763aaSMatthew G. Knepley 
6566bb7acecfSBarry Smith   Note:
6567bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6568bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6569f4d763aaSMatthew G. Knepley 
65701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6571f4d763aaSMatthew G. Knepley @*/
6572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6573d71ae5a4SJacob Faibussowitsch {
6574f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6575f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6576f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6577cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6579cdb7a50dSMatthew G. Knepley }
6580cdb7a50dSMatthew G. Knepley 
65815d83a8b1SBarry Smith /*@
6582bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6583cdb7a50dSMatthew G. Knepley 
6584cdb7a50dSMatthew G. Knepley   Input Parameters:
6585bb7acecfSBarry Smith + dm     - The original `DM`
6586b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6587cdb7a50dSMatthew G. Knepley . name   - The sequence name
6588cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6589cdb7a50dSMatthew G. Knepley 
6590cdb7a50dSMatthew G. Knepley   Output Parameter:
6591cdb7a50dSMatthew G. Knepley . val - The output sequence value
6592cdb7a50dSMatthew G. Knepley 
6593cdb7a50dSMatthew G. Knepley   Level: intermediate
6594cdb7a50dSMatthew G. Knepley 
6595bb7acecfSBarry Smith   Note:
6596bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6597bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6598bb7acecfSBarry Smith 
659973ff1848SBarry Smith   Developer Note:
6600bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6601cdb7a50dSMatthew G. Knepley 
66021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6603cdb7a50dSMatthew G. Knepley @*/
6604b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val)
6605d71ae5a4SJacob Faibussowitsch {
6606cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6607cdb7a50dSMatthew G. Knepley 
6608cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6609cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6610cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6611b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
66124f572ea9SToby Isaac   PetscAssertPointer(val, 5);
66139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6614cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6615cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6616cdb7a50dSMatthew G. Knepley     PetscScalar value;
6617cdb7a50dSMatthew G. Knepley 
66189566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
66194aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6620cdb7a50dSMatthew G. Knepley #endif
6621cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
66223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6623f4d763aaSMatthew G. Knepley }
66248e4ac7eaSMatthew G. Knepley 
66258e4ac7eaSMatthew G. Knepley /*@
6626b2033f5dSMatthew G. Knepley   DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer`
6627b2033f5dSMatthew G. Knepley 
6628b2033f5dSMatthew G. Knepley   Input Parameters:
6629b2033f5dSMatthew G. Knepley + dm     - The original `DM`
6630b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6631b2033f5dSMatthew G. Knepley - name   - The sequence name
6632b2033f5dSMatthew G. Knepley 
6633b2033f5dSMatthew G. Knepley   Output Parameter:
6634b2033f5dSMatthew G. Knepley . len - The length of the output sequence
6635b2033f5dSMatthew G. Knepley 
6636b2033f5dSMatthew G. Knepley   Level: intermediate
6637b2033f5dSMatthew G. Knepley 
6638b2033f5dSMatthew G. Knepley   Note:
6639b2033f5dSMatthew G. Knepley   This is intended for output that should appear in sequence, for instance
6640b2033f5dSMatthew G. Knepley   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6641b2033f5dSMatthew G. Knepley 
6642b2033f5dSMatthew G. Knepley   Developer Note:
6643b2033f5dSMatthew G. Knepley   It is unclear at the user API level why a `DM` is needed as input
6644b2033f5dSMatthew G. Knepley 
6645b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6646b2033f5dSMatthew G. Knepley @*/
6647b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len)
6648b2033f5dSMatthew G. Knepley {
6649b2033f5dSMatthew G. Knepley   PetscBool ishdf5;
6650b2033f5dSMatthew G. Knepley 
6651b2033f5dSMatthew G. Knepley   PetscFunctionBegin;
6652b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6653b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6654b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
6655b2033f5dSMatthew G. Knepley   PetscAssertPointer(len, 4);
6656b2033f5dSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6657b2033f5dSMatthew G. Knepley   if (ishdf5) {
6658b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6659b2033f5dSMatthew G. Knepley     PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer));
6660b2033f5dSMatthew G. Knepley #endif
6661b2033f5dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6662b2033f5dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6663b2033f5dSMatthew G. Knepley }
6664b2033f5dSMatthew G. Knepley 
6665b2033f5dSMatthew G. Knepley /*@
6666bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66678e4ac7eaSMatthew G. Knepley 
666820f4b53cSBarry Smith   Not Collective
66698e4ac7eaSMatthew G. Knepley 
66708e4ac7eaSMatthew G. Knepley   Input Parameter:
6671bb7acecfSBarry Smith . dm - The `DM`
66728e4ac7eaSMatthew G. Knepley 
66738e4ac7eaSMatthew G. Knepley   Output Parameter:
6674bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66758e4ac7eaSMatthew G. Knepley 
66768e4ac7eaSMatthew G. Knepley   Level: beginner
66778e4ac7eaSMatthew G. Knepley 
66781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66798e4ac7eaSMatthew G. Knepley @*/
6680d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6681d71ae5a4SJacob Faibussowitsch {
66828e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
66838e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
66844f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
66858e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
66863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
66878e4ac7eaSMatthew G. Knepley }
66888e4ac7eaSMatthew G. Knepley 
66898e4ac7eaSMatthew G. Knepley /*@
6690bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66918e4ac7eaSMatthew G. Knepley 
669220f4b53cSBarry Smith   Collective
66938e4ac7eaSMatthew G. Knepley 
66948e4ac7eaSMatthew G. Knepley   Input Parameters:
6695bb7acecfSBarry Smith + dm         - The `DM`
6696bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66978e4ac7eaSMatthew G. Knepley 
669873ff1848SBarry Smith   Level: beginner
669973ff1848SBarry Smith 
6700bb7acecfSBarry Smith   Note:
6701bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
67025d3b26e6SMatthew G. Knepley 
67031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
67048e4ac7eaSMatthew G. Knepley @*/
6705d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6706d71ae5a4SJacob Faibussowitsch {
67078e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
67088e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67098833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
67108e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
67113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67128e4ac7eaSMatthew G. Knepley }
6713c58f1c22SToby Isaac 
6714cc4c1da9SBarry Smith /*@
6715bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6716c58f1c22SToby Isaac 
6717c58f1c22SToby Isaac   Not Collective
6718c58f1c22SToby Isaac 
6719c58f1c22SToby Isaac   Input Parameters:
6720bb7acecfSBarry Smith + dm   - The `DM` object
6721c58f1c22SToby Isaac - name - The label name
6722c58f1c22SToby Isaac 
6723c58f1c22SToby Isaac   Level: intermediate
6724c58f1c22SToby Isaac 
67251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6726c58f1c22SToby Isaac @*/
6727d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6728d71ae5a4SJacob Faibussowitsch {
67295d80c0bfSVaclav Hapla   PetscBool flg;
67305d80c0bfSVaclav Hapla   DMLabel   label;
6731c58f1c22SToby Isaac 
6732c58f1c22SToby Isaac   PetscFunctionBegin;
6733c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67344f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67359566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6736c58f1c22SToby Isaac   if (!flg) {
67379566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67389566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67399566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6740c58f1c22SToby Isaac   }
67413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6742c58f1c22SToby Isaac }
6743c58f1c22SToby Isaac 
6744cc4c1da9SBarry Smith /*@
6745bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
67460fdc7489SMatthew Knepley 
67470fdc7489SMatthew Knepley   Not Collective
67480fdc7489SMatthew Knepley 
67490fdc7489SMatthew Knepley   Input Parameters:
6750bb7acecfSBarry Smith + dm   - The `DM` object
67510fdc7489SMatthew Knepley . l    - The index for the label
67520fdc7489SMatthew Knepley - name - The label name
67530fdc7489SMatthew Knepley 
67540fdc7489SMatthew Knepley   Level: intermediate
67550fdc7489SMatthew Knepley 
67561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
67570fdc7489SMatthew Knepley @*/
6758d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6759d71ae5a4SJacob Faibussowitsch {
67600fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
67610fdc7489SMatthew Knepley   DMLabel     label;
67620fdc7489SMatthew Knepley   PetscInt    Nl, m;
67630fdc7489SMatthew Knepley   PetscBool   flg, match;
67640fdc7489SMatthew Knepley   const char *lname;
67650fdc7489SMatthew Knepley 
67660fdc7489SMatthew Knepley   PetscFunctionBegin;
67670fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67684f572ea9SToby Isaac   PetscAssertPointer(name, 3);
67699566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
67700fdc7489SMatthew Knepley   if (!flg) {
67719566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67729566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67739566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
67740fdc7489SMatthew Knepley   }
67759566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
677663a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67770fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67789566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67799566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67800fdc7489SMatthew Knepley     if (match) break;
67810fdc7489SMatthew Knepley   }
67823ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
67830fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
67840fdc7489SMatthew Knepley   else prev->next = orig->next;
67850fdc7489SMatthew Knepley   if (!l) {
67860fdc7489SMatthew Knepley     orig->next = dm->labels;
67870fdc7489SMatthew Knepley     dm->labels = orig;
67880fdc7489SMatthew Knepley   } else {
6789fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
67900fdc7489SMatthew Knepley     orig->next = prev->next;
67910fdc7489SMatthew Knepley     prev->next = orig;
67920fdc7489SMatthew Knepley   }
67933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67940fdc7489SMatthew Knepley }
67950fdc7489SMatthew Knepley 
6796cc4c1da9SBarry Smith /*@
6797bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6798c58f1c22SToby Isaac 
6799c58f1c22SToby Isaac   Not Collective
6800c58f1c22SToby Isaac 
6801c58f1c22SToby Isaac   Input Parameters:
6802bb7acecfSBarry Smith + dm    - The `DM` object
6803c58f1c22SToby Isaac . name  - The label name
6804c58f1c22SToby Isaac - point - The mesh point
6805c58f1c22SToby Isaac 
6806c58f1c22SToby Isaac   Output Parameter:
6807c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6808c58f1c22SToby Isaac 
6809c58f1c22SToby Isaac   Level: beginner
6810c58f1c22SToby Isaac 
68111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6812c58f1c22SToby Isaac @*/
6813d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6814d71ae5a4SJacob Faibussowitsch {
6815c58f1c22SToby Isaac   DMLabel label;
6816c58f1c22SToby Isaac 
6817c58f1c22SToby Isaac   PetscFunctionBegin;
6818c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68194f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68209566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68217a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
68229566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
68233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6824c58f1c22SToby Isaac }
6825c58f1c22SToby Isaac 
6826cc4c1da9SBarry Smith /*@
6827bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6828c58f1c22SToby Isaac 
6829c58f1c22SToby Isaac   Not Collective
6830c58f1c22SToby Isaac 
6831c58f1c22SToby Isaac   Input Parameters:
6832bb7acecfSBarry Smith + dm    - The `DM` object
6833c58f1c22SToby Isaac . name  - The label name
6834c58f1c22SToby Isaac . point - The mesh point
6835c58f1c22SToby Isaac - value - The label value for this point
6836c58f1c22SToby Isaac 
6837c58f1c22SToby Isaac   Output Parameter:
6838c58f1c22SToby Isaac 
6839c58f1c22SToby Isaac   Level: beginner
6840c58f1c22SToby Isaac 
68411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6842c58f1c22SToby Isaac @*/
6843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6844d71ae5a4SJacob Faibussowitsch {
6845c58f1c22SToby Isaac   DMLabel label;
6846c58f1c22SToby Isaac 
6847c58f1c22SToby Isaac   PetscFunctionBegin;
6848c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68494f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68509566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6851c58f1c22SToby Isaac   if (!label) {
68529566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
68539566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6854c58f1c22SToby Isaac   }
68559566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
68563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6857c58f1c22SToby Isaac }
6858c58f1c22SToby Isaac 
6859cc4c1da9SBarry Smith /*@
6860bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6861c58f1c22SToby Isaac 
6862c58f1c22SToby Isaac   Not Collective
6863c58f1c22SToby Isaac 
6864c58f1c22SToby Isaac   Input Parameters:
6865bb7acecfSBarry Smith + dm    - The `DM` object
6866c58f1c22SToby Isaac . name  - The label name
6867c58f1c22SToby Isaac . point - The mesh point
6868c58f1c22SToby Isaac - value - The label value for this point
6869c58f1c22SToby Isaac 
6870c58f1c22SToby Isaac   Level: beginner
6871c58f1c22SToby Isaac 
68721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6873c58f1c22SToby Isaac @*/
6874d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6875d71ae5a4SJacob Faibussowitsch {
6876c58f1c22SToby Isaac   DMLabel label;
6877c58f1c22SToby Isaac 
6878c58f1c22SToby Isaac   PetscFunctionBegin;
6879c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68804f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68819566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68823ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68839566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
68843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6885c58f1c22SToby Isaac }
6886c58f1c22SToby Isaac 
6887cc4c1da9SBarry Smith /*@
6888bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6889c58f1c22SToby Isaac 
6890c58f1c22SToby Isaac   Not Collective
6891c58f1c22SToby Isaac 
6892c58f1c22SToby Isaac   Input Parameters:
6893bb7acecfSBarry Smith + dm   - The `DM` object
6894c58f1c22SToby Isaac - name - The label name
6895c58f1c22SToby Isaac 
6896c58f1c22SToby Isaac   Output Parameter:
6897c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6898c58f1c22SToby Isaac 
6899c58f1c22SToby Isaac   Level: beginner
6900c58f1c22SToby Isaac 
690173ff1848SBarry Smith   Developer Note:
6902bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6903bb7acecfSBarry Smith 
69041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6905c58f1c22SToby Isaac @*/
6906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6907d71ae5a4SJacob Faibussowitsch {
6908c58f1c22SToby Isaac   DMLabel label;
6909c58f1c22SToby Isaac 
6910c58f1c22SToby Isaac   PetscFunctionBegin;
6911c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69124f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69134f572ea9SToby Isaac   PetscAssertPointer(size, 3);
69149566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6915c58f1c22SToby Isaac   *size = 0;
69163ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69179566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
69183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6919c58f1c22SToby Isaac }
6920c58f1c22SToby Isaac 
6921cc4c1da9SBarry Smith /*@
6922bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6923c58f1c22SToby Isaac 
6924c58f1c22SToby Isaac   Not Collective
6925c58f1c22SToby Isaac 
6926c58f1c22SToby Isaac   Input Parameters:
692760225df5SJacob Faibussowitsch + dm   - The `DM` object
6928c58f1c22SToby Isaac - name - The label name
6929c58f1c22SToby Isaac 
6930c58f1c22SToby Isaac   Output Parameter:
693120f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6932c58f1c22SToby Isaac 
6933c58f1c22SToby Isaac   Level: beginner
6934c58f1c22SToby Isaac 
69351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6936c58f1c22SToby Isaac @*/
6937d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6938d71ae5a4SJacob Faibussowitsch {
6939c58f1c22SToby Isaac   DMLabel label;
6940c58f1c22SToby Isaac 
6941c58f1c22SToby Isaac   PetscFunctionBegin;
6942c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69434f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69444f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
69459566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6946c58f1c22SToby Isaac   *ids = NULL;
6947dab2e251SBlaise Bourdin   if (label) {
69489566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6949dab2e251SBlaise Bourdin   } else {
6950dab2e251SBlaise Bourdin     /* returning an empty IS */
69519566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6952dab2e251SBlaise Bourdin   }
69533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6954c58f1c22SToby Isaac }
6955c58f1c22SToby Isaac 
6956cc4c1da9SBarry Smith /*@
6957c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6958c58f1c22SToby Isaac 
6959c58f1c22SToby Isaac   Not Collective
6960c58f1c22SToby Isaac 
6961c58f1c22SToby Isaac   Input Parameters:
6962bb7acecfSBarry Smith + dm    - The `DM` object
6963b6971eaeSBarry Smith . name  - The label name of the stratum
6964c58f1c22SToby Isaac - value - The stratum value
6965c58f1c22SToby Isaac 
6966c58f1c22SToby Isaac   Output Parameter:
6967bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6968c58f1c22SToby Isaac 
6969c58f1c22SToby Isaac   Level: beginner
6970c58f1c22SToby Isaac 
69711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6972c58f1c22SToby Isaac @*/
6973d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6974d71ae5a4SJacob Faibussowitsch {
6975c58f1c22SToby Isaac   DMLabel label;
6976c58f1c22SToby Isaac 
6977c58f1c22SToby Isaac   PetscFunctionBegin;
6978c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69794f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69804f572ea9SToby Isaac   PetscAssertPointer(size, 4);
69819566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6982c58f1c22SToby Isaac   *size = 0;
69833ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69849566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
69853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6986c58f1c22SToby Isaac }
6987c58f1c22SToby Isaac 
6988cc4c1da9SBarry Smith /*@
6989c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6990c58f1c22SToby Isaac 
6991c58f1c22SToby Isaac   Not Collective
6992c58f1c22SToby Isaac 
6993c58f1c22SToby Isaac   Input Parameters:
6994bb7acecfSBarry Smith + dm    - The `DM` object
6995c58f1c22SToby Isaac . name  - The label name
6996c58f1c22SToby Isaac - value - The stratum value
6997c58f1c22SToby Isaac 
6998c58f1c22SToby Isaac   Output Parameter:
699920f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
7000c58f1c22SToby Isaac 
7001c58f1c22SToby Isaac   Level: beginner
7002c58f1c22SToby Isaac 
70031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
7004c58f1c22SToby Isaac @*/
7005d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
7006d71ae5a4SJacob Faibussowitsch {
7007c58f1c22SToby Isaac   DMLabel label;
7008c58f1c22SToby Isaac 
7009c58f1c22SToby Isaac   PetscFunctionBegin;
7010c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70114f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70124f572ea9SToby Isaac   PetscAssertPointer(points, 4);
70139566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
7014c58f1c22SToby Isaac   *points = NULL;
70153ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70169566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
70173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7018c58f1c22SToby Isaac }
7019c58f1c22SToby Isaac 
7020cc4c1da9SBarry Smith /*@
70219044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
70224de306b1SToby Isaac 
70234de306b1SToby Isaac   Not Collective
70244de306b1SToby Isaac 
70254de306b1SToby Isaac   Input Parameters:
7026bb7acecfSBarry Smith + dm     - The `DM` object
70274de306b1SToby Isaac . name   - The label name
70284de306b1SToby Isaac . value  - The stratum value
70294de306b1SToby Isaac - points - The stratum points
70304de306b1SToby Isaac 
70314de306b1SToby Isaac   Level: beginner
70324de306b1SToby Isaac 
70331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
70344de306b1SToby Isaac @*/
7035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
7036d71ae5a4SJacob Faibussowitsch {
70374de306b1SToby Isaac   DMLabel label;
70384de306b1SToby Isaac 
70394de306b1SToby Isaac   PetscFunctionBegin;
70404de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70414f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7042292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
70439566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70443ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70459566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
70463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70474de306b1SToby Isaac }
70484de306b1SToby Isaac 
7049cc4c1da9SBarry Smith /*@
7050bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
7051c58f1c22SToby Isaac 
7052c58f1c22SToby Isaac   Not Collective
7053c58f1c22SToby Isaac 
7054c58f1c22SToby Isaac   Input Parameters:
7055bb7acecfSBarry Smith + dm    - The `DM` object
7056c58f1c22SToby Isaac . name  - The label name
7057c58f1c22SToby Isaac - value - The label value for this point
7058c58f1c22SToby Isaac 
7059c58f1c22SToby Isaac   Output Parameter:
7060c58f1c22SToby Isaac 
7061c58f1c22SToby Isaac   Level: beginner
7062c58f1c22SToby Isaac 
70631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
7064c58f1c22SToby Isaac @*/
7065d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
7066d71ae5a4SJacob Faibussowitsch {
7067c58f1c22SToby Isaac   DMLabel label;
7068c58f1c22SToby Isaac 
7069c58f1c22SToby Isaac   PetscFunctionBegin;
7070c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70714f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70729566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70733ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70749566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
70753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7076c58f1c22SToby Isaac }
7077c58f1c22SToby Isaac 
7078c58f1c22SToby Isaac /*@
7079bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7080c58f1c22SToby Isaac 
7081c58f1c22SToby Isaac   Not Collective
7082c58f1c22SToby Isaac 
7083c58f1c22SToby Isaac   Input Parameter:
7084bb7acecfSBarry Smith . dm - The `DM` object
7085c58f1c22SToby Isaac 
7086c58f1c22SToby Isaac   Output Parameter:
7087c58f1c22SToby Isaac . numLabels - the number of Labels
7088c58f1c22SToby Isaac 
7089c58f1c22SToby Isaac   Level: intermediate
7090c58f1c22SToby Isaac 
70911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7092c58f1c22SToby Isaac @*/
7093d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7094d71ae5a4SJacob Faibussowitsch {
70955d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7096c58f1c22SToby Isaac   PetscInt    n    = 0;
7097c58f1c22SToby Isaac 
7098c58f1c22SToby Isaac   PetscFunctionBegin;
7099c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71004f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
71019371c9d4SSatish Balay   while (next) {
71029371c9d4SSatish Balay     ++n;
71039371c9d4SSatish Balay     next = next->next;
71049371c9d4SSatish Balay   }
7105c58f1c22SToby Isaac   *numLabels = n;
71063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7107c58f1c22SToby Isaac }
7108c58f1c22SToby Isaac 
7109cc4c1da9SBarry Smith /*@
7110c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7111c58f1c22SToby Isaac 
7112c58f1c22SToby Isaac   Not Collective
7113c58f1c22SToby Isaac 
7114c58f1c22SToby Isaac   Input Parameters:
7115bb7acecfSBarry Smith + dm - The `DM` object
7116c58f1c22SToby Isaac - n  - the label number
7117c58f1c22SToby Isaac 
7118c58f1c22SToby Isaac   Output Parameter:
7119c58f1c22SToby Isaac . name - the label name
7120c58f1c22SToby Isaac 
7121c58f1c22SToby Isaac   Level: intermediate
7122c58f1c22SToby Isaac 
712373ff1848SBarry Smith   Developer Note:
7124bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7125bb7acecfSBarry Smith 
71261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7127c58f1c22SToby Isaac @*/
7128cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[])
7129d71ae5a4SJacob Faibussowitsch {
71305d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7131c58f1c22SToby Isaac   PetscInt    l    = 0;
7132c58f1c22SToby Isaac 
7133c58f1c22SToby Isaac   PetscFunctionBegin;
7134c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71354f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7136c58f1c22SToby Isaac   while (next) {
7137c58f1c22SToby Isaac     if (l == n) {
71389566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
71393ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7140c58f1c22SToby Isaac     }
7141c58f1c22SToby Isaac     ++l;
7142c58f1c22SToby Isaac     next = next->next;
7143c58f1c22SToby Isaac   }
714463a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7145c58f1c22SToby Isaac }
7146c58f1c22SToby Isaac 
7147cc4c1da9SBarry Smith /*@
7148bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7149c58f1c22SToby Isaac 
7150c58f1c22SToby Isaac   Not Collective
7151c58f1c22SToby Isaac 
7152c58f1c22SToby Isaac   Input Parameters:
7153bb7acecfSBarry Smith + dm   - The `DM` object
7154c58f1c22SToby Isaac - name - The label name
7155c58f1c22SToby Isaac 
7156c58f1c22SToby Isaac   Output Parameter:
7157bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7158c58f1c22SToby Isaac 
7159c58f1c22SToby Isaac   Level: intermediate
7160c58f1c22SToby Isaac 
71611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7162c58f1c22SToby Isaac @*/
7163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7164d71ae5a4SJacob Faibussowitsch {
71655d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7166d67d17b1SMatthew G. Knepley   const char *lname;
7167c58f1c22SToby Isaac 
7168c58f1c22SToby Isaac   PetscFunctionBegin;
7169c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71704f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71714f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7172c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7173c58f1c22SToby Isaac   while (next) {
71749566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71759566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7176c58f1c22SToby Isaac     if (*hasLabel) break;
7177c58f1c22SToby Isaac     next = next->next;
7178c58f1c22SToby Isaac   }
71793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7180c58f1c22SToby Isaac }
7181c58f1c22SToby Isaac 
7182a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7183cc4c1da9SBarry Smith /*@
718420f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7185c58f1c22SToby Isaac 
7186c58f1c22SToby Isaac   Not Collective
7187c58f1c22SToby Isaac 
7188c58f1c22SToby Isaac   Input Parameters:
7189bb7acecfSBarry Smith + dm   - The `DM` object
7190c58f1c22SToby Isaac - name - The label name
7191c58f1c22SToby Isaac 
7192c58f1c22SToby Isaac   Output Parameter:
719320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7194c58f1c22SToby Isaac 
7195bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7196bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7197bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7198bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7199bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7200bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7201bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
72026d7c9049SMatthew G. Knepley 
7203c58f1c22SToby Isaac   Level: intermediate
7204c58f1c22SToby Isaac 
720560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7206c58f1c22SToby Isaac @*/
7207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7208d71ae5a4SJacob Faibussowitsch {
72095d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7210c58f1c22SToby Isaac   PetscBool   hasLabel;
7211d67d17b1SMatthew G. Knepley   const char *lname;
7212c58f1c22SToby Isaac 
7213c58f1c22SToby Isaac   PetscFunctionBegin;
7214c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72154f572ea9SToby Isaac   PetscAssertPointer(name, 2);
72164f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7217c58f1c22SToby Isaac   *label = NULL;
7218c58f1c22SToby Isaac   while (next) {
72199566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72209566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7221c58f1c22SToby Isaac     if (hasLabel) {
7222c58f1c22SToby Isaac       *label = next->label;
7223c58f1c22SToby Isaac       break;
7224c58f1c22SToby Isaac     }
7225c58f1c22SToby Isaac     next = next->next;
7226c58f1c22SToby Isaac   }
72273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7228c58f1c22SToby Isaac }
7229c58f1c22SToby Isaac 
7230cc4c1da9SBarry Smith /*@
7231bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7232c58f1c22SToby Isaac 
7233c58f1c22SToby Isaac   Not Collective
7234c58f1c22SToby Isaac 
7235c58f1c22SToby Isaac   Input Parameters:
7236bb7acecfSBarry Smith + dm - The `DM` object
7237c58f1c22SToby Isaac - n  - the label number
7238c58f1c22SToby Isaac 
7239c58f1c22SToby Isaac   Output Parameter:
7240c58f1c22SToby Isaac . label - the label
7241c58f1c22SToby Isaac 
7242c58f1c22SToby Isaac   Level: intermediate
7243c58f1c22SToby Isaac 
72441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7245c58f1c22SToby Isaac @*/
7246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7247d71ae5a4SJacob Faibussowitsch {
72485d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7249c58f1c22SToby Isaac   PetscInt    l    = 0;
7250c58f1c22SToby Isaac 
7251c58f1c22SToby Isaac   PetscFunctionBegin;
7252c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72534f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7254c58f1c22SToby Isaac   while (next) {
7255c58f1c22SToby Isaac     if (l == n) {
7256c58f1c22SToby Isaac       *label = next->label;
72573ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7258c58f1c22SToby Isaac     }
7259c58f1c22SToby Isaac     ++l;
7260c58f1c22SToby Isaac     next = next->next;
7261c58f1c22SToby Isaac   }
726263a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7263c58f1c22SToby Isaac }
7264c58f1c22SToby Isaac 
7265cc4c1da9SBarry Smith /*@
7266bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7267c58f1c22SToby Isaac 
7268c58f1c22SToby Isaac   Not Collective
7269c58f1c22SToby Isaac 
7270c58f1c22SToby Isaac   Input Parameters:
7271bb7acecfSBarry Smith + dm    - The `DM` object
7272bb7acecfSBarry Smith - label - The `DMLabel`
7273c58f1c22SToby Isaac 
7274c58f1c22SToby Isaac   Level: developer
7275c58f1c22SToby Isaac 
727660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7277c58f1c22SToby Isaac @*/
7278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7279d71ae5a4SJacob Faibussowitsch {
72805d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7281c58f1c22SToby Isaac   PetscBool   hasLabel;
7282d67d17b1SMatthew G. Knepley   const char *lname;
72835d80c0bfSVaclav Hapla   PetscBool   flg;
7284c58f1c22SToby Isaac 
7285c58f1c22SToby Isaac   PetscFunctionBegin;
7286c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72879566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
72889566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
72897a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
72909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7291c58f1c22SToby Isaac   tmpLabel->label  = label;
7292c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
72935d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
72945d80c0bfSVaclav Hapla   *p = tmpLabel;
72959566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
72969566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
72975d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
72989566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7299ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
73003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7301c58f1c22SToby Isaac }
7302c58f1c22SToby Isaac 
7303a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7304cc4c1da9SBarry Smith /*@
73054a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
73064a7ee7d0SMatthew G. Knepley 
73074a7ee7d0SMatthew G. Knepley   Not Collective
73084a7ee7d0SMatthew G. Knepley 
73094a7ee7d0SMatthew G. Knepley   Input Parameters:
7310bb7acecfSBarry Smith + dm    - The `DM` object
7311bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
73124a7ee7d0SMatthew G. Knepley 
7313bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7314bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7315bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7316bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7317bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7318bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7319bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
73204a7ee7d0SMatthew G. Knepley 
73214a7ee7d0SMatthew G. Knepley   Level: intermediate
73224a7ee7d0SMatthew G. Knepley 
73231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
73244a7ee7d0SMatthew G. Knepley @*/
7325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7326d71ae5a4SJacob Faibussowitsch {
73274a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
73284a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
73294a7ee7d0SMatthew G. Knepley   const char *name, *lname;
73304a7ee7d0SMatthew G. Knepley 
73314a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
73324a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73334a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
73349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
73354a7ee7d0SMatthew G. Knepley   while (next) {
73369566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
73379566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
73384a7ee7d0SMatthew G. Knepley     if (hasLabel) {
73399566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
73409566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
73414a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
73429566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
73434a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
73449566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
73454a7ee7d0SMatthew G. Knepley       next->label = label;
73464a7ee7d0SMatthew G. Knepley       break;
73474a7ee7d0SMatthew G. Knepley     }
73484a7ee7d0SMatthew G. Knepley     next = next->next;
73494a7ee7d0SMatthew G. Knepley   }
73503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73514a7ee7d0SMatthew G. Knepley }
73524a7ee7d0SMatthew G. Knepley 
7353cc4c1da9SBarry Smith /*@
7354bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7355c58f1c22SToby Isaac 
7356c58f1c22SToby Isaac   Not Collective
7357c58f1c22SToby Isaac 
7358c58f1c22SToby Isaac   Input Parameters:
7359bb7acecfSBarry Smith + dm   - The `DM` object
7360c58f1c22SToby Isaac - name - The label name
7361c58f1c22SToby Isaac 
7362c58f1c22SToby Isaac   Output Parameter:
736320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7364bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7365c58f1c22SToby Isaac 
7366c58f1c22SToby Isaac   Level: developer
7367c58f1c22SToby Isaac 
73681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7369c58f1c22SToby Isaac @*/
7370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7371d71ae5a4SJacob Faibussowitsch {
737295d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7373c58f1c22SToby Isaac   PetscBool   hasLabel;
7374d67d17b1SMatthew G. Knepley   const char *lname;
7375c58f1c22SToby Isaac 
7376c58f1c22SToby Isaac   PetscFunctionBegin;
7377c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73784f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7379e5472504SVaclav Hapla   if (label) {
73804f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7381c58f1c22SToby Isaac     *label = NULL;
7382e5472504SVaclav Hapla   }
73835d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
73849566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
73859566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7386c58f1c22SToby Isaac     if (hasLabel) {
738795d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
73889566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
738995d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
73909566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7391ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
739295d578d6SVaclav Hapla       if (label) *label = link->label;
73939566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
73949566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7395c58f1c22SToby Isaac       break;
7396c58f1c22SToby Isaac     }
7397c58f1c22SToby Isaac   }
73983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7399c58f1c22SToby Isaac }
7400c58f1c22SToby Isaac 
7401306894acSVaclav Hapla /*@
7402bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7403306894acSVaclav Hapla 
7404306894acSVaclav Hapla   Not Collective
7405306894acSVaclav Hapla 
7406306894acSVaclav Hapla   Input Parameters:
7407bb7acecfSBarry Smith + dm           - The `DM` object
7408bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
740920f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7410306894acSVaclav Hapla 
7411306894acSVaclav Hapla   Level: developer
7412306894acSVaclav Hapla 
7413bb7acecfSBarry Smith   Note:
7414306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7415bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7416306894acSVaclav Hapla   *label nullified.
7417306894acSVaclav Hapla 
74181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7419306894acSVaclav Hapla @*/
7420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7421d71ae5a4SJacob Faibussowitsch {
742243e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7423306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7424306894acSVaclav Hapla 
7425306894acSVaclav Hapla   PetscFunctionBegin;
7426306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74274f572ea9SToby Isaac   PetscAssertPointer(label, 2);
74283ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7429306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7430306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
74315d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
743243e45a93SVaclav Hapla     if (*label == link->label) {
7433306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
743443e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7435306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7436ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
743743e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
74389566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
74399566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7440306894acSVaclav Hapla       break;
7441306894acSVaclav Hapla     }
7442306894acSVaclav Hapla   }
74437a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
74443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7445306894acSVaclav Hapla }
7446306894acSVaclav Hapla 
7447cc4c1da9SBarry Smith /*@
7448c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7449c58f1c22SToby Isaac 
7450c58f1c22SToby Isaac   Not Collective
7451c58f1c22SToby Isaac 
7452c58f1c22SToby Isaac   Input Parameters:
7453bb7acecfSBarry Smith + dm   - The `DM` object
7454c58f1c22SToby Isaac - name - The label name
7455c58f1c22SToby Isaac 
7456c58f1c22SToby Isaac   Output Parameter:
7457c58f1c22SToby Isaac . output - The flag for output
7458c58f1c22SToby Isaac 
7459c58f1c22SToby Isaac   Level: developer
7460c58f1c22SToby Isaac 
74611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7462c58f1c22SToby Isaac @*/
7463d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7464d71ae5a4SJacob Faibussowitsch {
74655d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7466d67d17b1SMatthew G. Knepley   const char *lname;
7467c58f1c22SToby Isaac 
7468c58f1c22SToby Isaac   PetscFunctionBegin;
7469c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74704f572ea9SToby Isaac   PetscAssertPointer(name, 2);
74714f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7472c58f1c22SToby Isaac   while (next) {
7473c58f1c22SToby Isaac     PetscBool flg;
7474c58f1c22SToby Isaac 
74759566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74769566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74779371c9d4SSatish Balay     if (flg) {
74789371c9d4SSatish Balay       *output = next->output;
74793ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74809371c9d4SSatish Balay     }
7481c58f1c22SToby Isaac     next = next->next;
7482c58f1c22SToby Isaac   }
748398921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7484c58f1c22SToby Isaac }
7485c58f1c22SToby Isaac 
7486cc4c1da9SBarry Smith /*@
7487bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7488c58f1c22SToby Isaac 
7489c58f1c22SToby Isaac   Not Collective
7490c58f1c22SToby Isaac 
7491c58f1c22SToby Isaac   Input Parameters:
7492bb7acecfSBarry Smith + dm     - The `DM` object
7493c58f1c22SToby Isaac . name   - The label name
7494bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7495c58f1c22SToby Isaac 
7496c58f1c22SToby Isaac   Level: developer
7497c58f1c22SToby Isaac 
74981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7499c58f1c22SToby Isaac @*/
7500d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7501d71ae5a4SJacob Faibussowitsch {
75025d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7503d67d17b1SMatthew G. Knepley   const char *lname;
7504c58f1c22SToby Isaac 
7505c58f1c22SToby Isaac   PetscFunctionBegin;
7506c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
75074f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7508c58f1c22SToby Isaac   while (next) {
7509c58f1c22SToby Isaac     PetscBool flg;
7510c58f1c22SToby Isaac 
75119566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
75129566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
75139371c9d4SSatish Balay     if (flg) {
75149371c9d4SSatish Balay       next->output = output;
75153ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
75169371c9d4SSatish Balay     }
7517c58f1c22SToby Isaac     next = next->next;
7518c58f1c22SToby Isaac   }
751998921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7520c58f1c22SToby Isaac }
7521c58f1c22SToby Isaac 
7522c58f1c22SToby Isaac /*@
7523bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7524c58f1c22SToby Isaac 
752520f4b53cSBarry Smith   Collective
7526c58f1c22SToby Isaac 
7527d8d19677SJose E. Roman   Input Parameters:
7528bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7529bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7530bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7531bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7532bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7533c58f1c22SToby Isaac 
7534c58f1c22SToby Isaac   Level: intermediate
7535c58f1c22SToby Isaac 
7536bb7acecfSBarry Smith   Note:
75372cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7538c58f1c22SToby Isaac 
75391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7540c58f1c22SToby Isaac @*/
7541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7542d71ae5a4SJacob Faibussowitsch {
75432cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7544c58f1c22SToby Isaac   const char *name;
7545c58f1c22SToby Isaac   PetscBool   flg;
75465d80c0bfSVaclav Hapla   DMLabelLink link;
7547c58f1c22SToby Isaac 
75485d80c0bfSVaclav Hapla   PetscFunctionBegin;
75495d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
75505d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
75515d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
75525d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
75537a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
75543ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
75555d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
75565d80c0bfSVaclav Hapla     label = link->label;
75579566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
75585d80c0bfSVaclav Hapla     if (!all) {
75599566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7560c58f1c22SToby Isaac       if (flg) continue;
75619566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
75627d5acc75SStefano Zampini       if (flg) continue;
75639566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7564ba2698f1SMatthew G. Knepley       if (flg) continue;
75655d80c0bfSVaclav Hapla     }
75669566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
75672cbb9b06SVaclav Hapla     if (labelOld) {
75682cbb9b06SVaclav Hapla       switch (emode) {
7569d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7570d71ae5a4SJacob Faibussowitsch         continue;
7571d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7572d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7573d71ae5a4SJacob Faibussowitsch         break;
7574d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7575d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7576d71ae5a4SJacob Faibussowitsch       default:
7577d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75782cbb9b06SVaclav Hapla       }
75792cbb9b06SVaclav Hapla     }
75805d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
75819566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
75825d80c0bfSVaclav Hapla     } else {
75835d80c0bfSVaclav Hapla       labelNew = label;
75845d80c0bfSVaclav Hapla     }
75859566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
75869566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7587c58f1c22SToby Isaac   }
75883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7589c58f1c22SToby Isaac }
7590461a15a0SLisandro Dalcin 
7591609dae6eSVaclav Hapla /*@C
7592b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7593609dae6eSVaclav Hapla 
759420f4b53cSBarry Smith   Collective; No Fortran Support
7595609dae6eSVaclav Hapla 
7596609dae6eSVaclav Hapla   Input Parameters:
7597bb7acecfSBarry Smith + dm0 - First `DM` object
7598bb7acecfSBarry Smith - dm1 - Second `DM` object
7599609dae6eSVaclav Hapla 
7600a4e35b19SJacob Faibussowitsch   Output Parameters:
76015efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
760220f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7603609dae6eSVaclav Hapla 
7604609dae6eSVaclav Hapla   Level: intermediate
7605609dae6eSVaclav Hapla 
7606609dae6eSVaclav Hapla   Notes:
7607bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7608bb7acecfSBarry Smith 
760920f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7610bb7acecfSBarry Smith 
761120f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7612609dae6eSVaclav Hapla 
76135efe38ccSVaclav Hapla   The output message is set independently on each rank.
7614bb7acecfSBarry Smith 
7615bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7616bb7acecfSBarry Smith 
761720f4b53cSBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7618bb7acecfSBarry Smith 
761920f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7620609dae6eSVaclav Hapla 
7621609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7622bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7623609dae6eSVaclav Hapla 
7624cc4c1da9SBarry Smith   Developer Note:
7625cc4c1da9SBarry Smith   Can automatically generate the Fortran stub because `message` must be freed with `PetscFree()`
7626cc4c1da9SBarry Smith 
76271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7628609dae6eSVaclav Hapla @*/
7629d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7630d71ae5a4SJacob Faibussowitsch {
76315efe38ccSVaclav Hapla   PetscInt    n, i;
7632609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
76335efe38ccSVaclav Hapla   PetscBool   eq;
7634609dae6eSVaclav Hapla   MPI_Comm    comm;
76355efe38ccSVaclav Hapla   PetscMPIInt rank;
7636609dae6eSVaclav Hapla 
7637609dae6eSVaclav Hapla   PetscFunctionBegin;
7638609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7639609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7640609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
76414f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
76424f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
76439566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
76449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
76455efe38ccSVaclav Hapla   {
76465efe38ccSVaclav Hapla     PetscInt n1;
76475efe38ccSVaclav Hapla 
76489566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
76499566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
76505efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
765148a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7652462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
76535efe38ccSVaclav Hapla     if (!eq) goto finish;
76545efe38ccSVaclav Hapla   }
76555efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7656609dae6eSVaclav Hapla     DMLabel     l0, l1;
7657609dae6eSVaclav Hapla     const char *name;
7658609dae6eSVaclav Hapla     char       *msgInner;
7659609dae6eSVaclav Hapla 
7660609dae6eSVaclav Hapla     /* Ignore label order */
76619566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
76629566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
76639566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7664609dae6eSVaclav Hapla     if (!l1) {
766563a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
76665efe38ccSVaclav Hapla       eq = PETSC_FALSE;
76675efe38ccSVaclav Hapla       break;
7668609dae6eSVaclav Hapla     }
76699566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
76709566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
76719566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
76725efe38ccSVaclav Hapla     if (!eq) break;
7673609dae6eSVaclav Hapla   }
7674462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7675609dae6eSVaclav Hapla finish:
76765efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7677609dae6eSVaclav Hapla   if (message) {
7678609dae6eSVaclav Hapla     *message = NULL;
767948a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76805efe38ccSVaclav Hapla   } else {
768148a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
76829566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
76835efe38ccSVaclav Hapla   }
76845efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
76855efe38ccSVaclav Hapla   if (equal) *equal = eq;
76867a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
76873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7688609dae6eSVaclav Hapla }
7689609dae6eSVaclav Hapla 
7690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7691d71ae5a4SJacob Faibussowitsch {
7692461a15a0SLisandro Dalcin   PetscFunctionBegin;
76934f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7694461a15a0SLisandro Dalcin   if (!*label) {
76959566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
76969566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7697461a15a0SLisandro Dalcin   }
76989566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
76993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7700461a15a0SLisandro Dalcin }
7701461a15a0SLisandro Dalcin 
77020fdc7489SMatthew Knepley /*
77030fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
77040fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
77050fdc7489SMatthew Knepley   (label, id) pair in the DM.
77060fdc7489SMatthew Knepley 
77070fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
77080fdc7489SMatthew Knepley   each label.
77090fdc7489SMatthew Knepley */
7710d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7711d71ae5a4SJacob Faibussowitsch {
77120fdc7489SMatthew Knepley   DMUniversalLabel ul;
77130fdc7489SMatthew Knepley   PetscBool       *active;
77140fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
77150fdc7489SMatthew Knepley 
77160fdc7489SMatthew Knepley   PetscFunctionBegin;
77179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
77189566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
77199566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
77209566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
77210fdc7489SMatthew Knepley   ul->Nl = 0;
77220fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
77230fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
77240fdc7489SMatthew Knepley     const char *name;
77250fdc7489SMatthew Knepley 
77269566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77279566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
77289566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
77290fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
77300fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
77310fdc7489SMatthew Knepley   }
77329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
77330fdc7489SMatthew Knepley   ul->Nv = 0;
77340fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77350fdc7489SMatthew Knepley     DMLabel     label;
77360fdc7489SMatthew Knepley     PetscInt    nv;
77370fdc7489SMatthew Knepley     const char *name;
77380fdc7489SMatthew Knepley 
77390fdc7489SMatthew Knepley     if (!active[l]) continue;
77409566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77419566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77429566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77439566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
77440fdc7489SMatthew Knepley     ul->indices[m] = l;
77450fdc7489SMatthew Knepley     ul->Nv += nv;
77460fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
77470fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
77480fdc7489SMatthew Knepley     ++m;
77490fdc7489SMatthew Knepley   }
77500fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
77510fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
77520fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
77530fdc7489SMatthew Knepley   }
77540fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77550fdc7489SMatthew Knepley     PetscInt b;
77560fdc7489SMatthew Knepley 
77570fdc7489SMatthew Knepley     ul->masks[l] = 0;
77580fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
77590fdc7489SMatthew Knepley   }
77609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
77610fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77620fdc7489SMatthew Knepley     DMLabel         label;
77630fdc7489SMatthew Knepley     IS              valueIS;
77640fdc7489SMatthew Knepley     const PetscInt *varr;
77650fdc7489SMatthew Knepley     PetscInt        nv, v;
77660fdc7489SMatthew Knepley 
77670fdc7489SMatthew Knepley     if (!active[l]) continue;
77689566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77699566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77709566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
77719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7772ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
77739566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
77749566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
77759566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
77760fdc7489SMatthew Knepley     ++m;
77770fdc7489SMatthew Knepley   }
77789566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
77790fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77800fdc7489SMatthew Knepley     PetscInt  uval   = 0;
77810fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
77820fdc7489SMatthew Knepley 
77830fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
77840fdc7489SMatthew Knepley       DMLabel  label;
77850649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
77860fdc7489SMatthew Knepley 
77870fdc7489SMatthew Knepley       if (!active[l]) continue;
77889566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
77899566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
77909566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
77919371c9d4SSatish Balay       if (val == defval) {
77929371c9d4SSatish Balay         ++m;
77939371c9d4SSatish Balay         continue;
77949371c9d4SSatish Balay       }
77950649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
77960fdc7489SMatthew Knepley       marked = PETSC_TRUE;
77979566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
779863a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
77990fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
78000fdc7489SMatthew Knepley       ++m;
78010fdc7489SMatthew Knepley     }
78029566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
78030fdc7489SMatthew Knepley   }
78049566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
78050fdc7489SMatthew Knepley   *universal = ul;
78063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78070fdc7489SMatthew Knepley }
78080fdc7489SMatthew Knepley 
7809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7810d71ae5a4SJacob Faibussowitsch {
78110fdc7489SMatthew Knepley   PetscInt l;
78120fdc7489SMatthew Knepley 
78130fdc7489SMatthew Knepley   PetscFunctionBegin;
78149566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
78159566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
78169566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
78179566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
78189566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
78190fdc7489SMatthew Knepley   *universal = NULL;
78203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78210fdc7489SMatthew Knepley }
78220fdc7489SMatthew Knepley 
7823d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7824d71ae5a4SJacob Faibussowitsch {
78250fdc7489SMatthew Knepley   PetscFunctionBegin;
78264f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
78270fdc7489SMatthew Knepley   *ulabel = ul->label;
78283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78290fdc7489SMatthew Knepley }
78300fdc7489SMatthew Knepley 
7831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7832d71ae5a4SJacob Faibussowitsch {
78330fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
78340fdc7489SMatthew Knepley 
78350fdc7489SMatthew Knepley   PetscFunctionBegin;
7836064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
78370fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
78389566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
78399566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
78400fdc7489SMatthew Knepley   }
78410fdc7489SMatthew Knepley   if (preserveOrder) {
78420fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
78430fdc7489SMatthew Knepley       const char *name;
78440fdc7489SMatthew Knepley       PetscBool   match;
78450fdc7489SMatthew Knepley 
78469566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
78479566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
784863a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
78490fdc7489SMatthew Knepley     }
78500fdc7489SMatthew Knepley   }
78513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78520fdc7489SMatthew Knepley }
78530fdc7489SMatthew Knepley 
7854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7855d71ae5a4SJacob Faibussowitsch {
78560fdc7489SMatthew Knepley   PetscInt l;
78570fdc7489SMatthew Knepley 
78580fdc7489SMatthew Knepley   PetscFunctionBegin;
78590fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
78600fdc7489SMatthew Knepley     DMLabel  label;
78610fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
78620fdc7489SMatthew Knepley 
78630fdc7489SMatthew Knepley     if (lval) {
78649566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
78659566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
78669566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
78670fdc7489SMatthew Knepley     }
78680fdc7489SMatthew Knepley   }
78693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78700fdc7489SMatthew Knepley }
7871a8fb8f29SToby Isaac 
7872a8fb8f29SToby Isaac /*@
7873bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7874bb7acecfSBarry Smith 
787520f4b53cSBarry Smith   Not Collective
7876a8fb8f29SToby Isaac 
7877a8fb8f29SToby Isaac   Input Parameter:
7878bb7acecfSBarry Smith . dm - The `DM` object
7879a8fb8f29SToby Isaac 
7880a8fb8f29SToby Isaac   Output Parameter:
7881bb7acecfSBarry Smith . cdm - The coarse `DM`
7882a8fb8f29SToby Isaac 
7883a8fb8f29SToby Isaac   Level: intermediate
7884a8fb8f29SToby Isaac 
78851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7886a8fb8f29SToby Isaac @*/
7887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7888d71ae5a4SJacob Faibussowitsch {
7889a8fb8f29SToby Isaac   PetscFunctionBegin;
7890a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
78914f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7892a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
78933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7894a8fb8f29SToby Isaac }
7895a8fb8f29SToby Isaac 
7896a8fb8f29SToby Isaac /*@
7897bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7898a8fb8f29SToby Isaac 
7899a8fb8f29SToby Isaac   Input Parameters:
7900bb7acecfSBarry Smith + dm  - The `DM` object
7901bb7acecfSBarry Smith - cdm - The coarse `DM`
7902a8fb8f29SToby Isaac 
7903a8fb8f29SToby Isaac   Level: intermediate
7904a8fb8f29SToby Isaac 
7905bb7acecfSBarry Smith   Note:
7906bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7907bb7acecfSBarry Smith 
79081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7909a8fb8f29SToby Isaac @*/
7910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7911d71ae5a4SJacob Faibussowitsch {
7912a8fb8f29SToby Isaac   PetscFunctionBegin;
7913a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7914a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
791589d734beSBarry Smith   if (dm == cdm) cdm = NULL;
79169566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
79179566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7918a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
79193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7920a8fb8f29SToby Isaac }
7921a8fb8f29SToby Isaac 
792288bdff64SToby Isaac /*@
7923bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
792488bdff64SToby Isaac 
792588bdff64SToby Isaac   Input Parameter:
7926bb7acecfSBarry Smith . dm - The `DM` object
792788bdff64SToby Isaac 
792888bdff64SToby Isaac   Output Parameter:
7929bb7acecfSBarry Smith . fdm - The fine `DM`
793088bdff64SToby Isaac 
793188bdff64SToby Isaac   Level: intermediate
793288bdff64SToby Isaac 
79331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
793488bdff64SToby Isaac @*/
7935d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7936d71ae5a4SJacob Faibussowitsch {
793788bdff64SToby Isaac   PetscFunctionBegin;
793888bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79394f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
794088bdff64SToby Isaac   *fdm = dm->fineMesh;
79413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
794288bdff64SToby Isaac }
794388bdff64SToby Isaac 
794488bdff64SToby Isaac /*@
7945bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
794688bdff64SToby Isaac 
794788bdff64SToby Isaac   Input Parameters:
7948bb7acecfSBarry Smith + dm  - The `DM` object
7949bb7acecfSBarry Smith - fdm - The fine `DM`
795088bdff64SToby Isaac 
7951bb7acecfSBarry Smith   Level: developer
795288bdff64SToby Isaac 
7953bb7acecfSBarry Smith   Note:
7954bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7955bb7acecfSBarry Smith 
79561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
795788bdff64SToby Isaac @*/
7958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7959d71ae5a4SJacob Faibussowitsch {
796088bdff64SToby Isaac   PetscFunctionBegin;
796188bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
796288bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
796389d734beSBarry Smith   if (dm == fdm) fdm = NULL;
79649566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
79659566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
796688bdff64SToby Isaac   dm->fineMesh = fdm;
79673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
796888bdff64SToby Isaac }
796988bdff64SToby Isaac 
7970a6ba4734SToby Isaac /*@C
7971bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7972a6ba4734SToby Isaac 
797320f4b53cSBarry Smith   Collective
7974783e2ec8SMatthew G. Knepley 
7975a6ba4734SToby Isaac   Input Parameters:
7976bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7977bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7978a6ba4734SToby Isaac . name     - The BC name
797945480ffeSMatthew G. Knepley . label    - The label defining constrained points
7980bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
798145480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7982a6ba4734SToby Isaac . field    - The field to constrain
798345480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7984a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7985a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
798656cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7987a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7988a6ba4734SToby Isaac 
798945480ffeSMatthew G. Knepley   Output Parameter:
799045480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
799145480ffeSMatthew G. Knepley 
7992a6ba4734SToby Isaac   Options Database Keys:
7993a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
7994a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7995a6ba4734SToby Isaac 
799620f4b53cSBarry Smith   Level: intermediate
799720f4b53cSBarry Smith 
7998bb7acecfSBarry Smith   Notes:
7999aeebefc2SPierre Jolivet   Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
800073ff1848SBarry Smith .vb
800173ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
800273ff1848SBarry Smith .ve
800356cf3b9cSMatthew G. Knepley 
8004a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
800556cf3b9cSMatthew G. Knepley 
800620f4b53cSBarry Smith .vb
800720f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
800820f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
800920f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
801020f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
801120f4b53cSBarry Smith .ve
801256cf3b9cSMatthew G. Knepley + dim - the spatial dimension
801356cf3b9cSMatthew G. Knepley . Nf - the number of fields
801456cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
801556cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
801656cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
801756cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
801856cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
801956cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
802056cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
802156cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
802256cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
802356cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
802456cf3b9cSMatthew G. Knepley . t - current time
802556cf3b9cSMatthew G. Knepley . x - coordinates of the current point
802656cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
802756cf3b9cSMatthew G. Knepley . constants - constant parameters
802856cf3b9cSMatthew G. Knepley - bcval - output values at the current point
802956cf3b9cSMatthew G. Knepley 
80301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
8031a6ba4734SToby Isaac @*/
8032d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
8033d71ae5a4SJacob Faibussowitsch {
8034e5e52638SMatthew G. Knepley   PetscDS ds;
8035a6ba4734SToby Isaac 
8036a6ba4734SToby Isaac   PetscFunctionBegin;
8037a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8038783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
803945480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
804045480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
804145480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
804245480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
804301a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
80449566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8045799db056SMatthew G. Knepley   /* Complete label */
8046799db056SMatthew G. Knepley   if (label) {
8047799db056SMatthew G. Knepley     PetscObject  obj;
8048799db056SMatthew G. Knepley     PetscClassId id;
8049799db056SMatthew G. Knepley 
8050799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
8051799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
8052799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
8053799db056SMatthew G. Knepley       DM plex;
8054799db056SMatthew G. Knepley 
8055799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
8056799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
8057799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
8058799db056SMatthew G. Knepley     }
8059799db056SMatthew G. Knepley   }
80609566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
80613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8062a6ba4734SToby Isaac }
8063a6ba4734SToby Isaac 
806445480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
8065d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
8066d71ae5a4SJacob Faibussowitsch {
8067e5e52638SMatthew G. Knepley   PetscDS     ds;
8068dff059c6SToby Isaac   DMBoundary *lastnext;
8069e6f8dbb6SToby Isaac   DSBoundary  dsbound;
8070e6f8dbb6SToby Isaac 
8071e6f8dbb6SToby Isaac   PetscFunctionBegin;
80729566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8073e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
807447a1f5adSToby Isaac   if (dm->boundary) {
807547a1f5adSToby Isaac     DMBoundary next = dm->boundary;
807647a1f5adSToby Isaac 
807747a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
80783ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
807947a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
808047a1f5adSToby Isaac     while (next) {
808147a1f5adSToby Isaac       DMBoundary b = next;
808247a1f5adSToby Isaac 
808347a1f5adSToby Isaac       next = b->next;
80849566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8085a6ba4734SToby Isaac     }
808647a1f5adSToby Isaac     dm->boundary = NULL;
8087a6ba4734SToby Isaac   }
808847a1f5adSToby Isaac 
8089f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8090e6f8dbb6SToby Isaac   while (dsbound) {
8091e6f8dbb6SToby Isaac     DMBoundary dmbound;
8092e6f8dbb6SToby Isaac 
80939566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8094e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
809545480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
809647a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8097dff059c6SToby Isaac     *lastnext = dmbound;
8098f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8099dff059c6SToby Isaac     dsbound   = dsbound->next;
8100a6ba4734SToby Isaac   }
81013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8102a6ba4734SToby Isaac }
8103a6ba4734SToby Isaac 
8104bb7acecfSBarry Smith /* TODO: missing manual page */
8105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8106d71ae5a4SJacob Faibussowitsch {
8107b95f2879SToby Isaac   DMBoundary b;
8108a6ba4734SToby Isaac 
8109a6ba4734SToby Isaac   PetscFunctionBegin;
8110a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81114f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8112a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
81139566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8114b95f2879SToby Isaac   b = dm->boundary;
811557508eceSPierre Jolivet   while (b && !*isBd) {
8116e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8117e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8118a6ba4734SToby Isaac     PetscInt   i;
8119a6ba4734SToby Isaac 
812045480ffeSMatthew G. Knepley     if (label) {
812157508eceSPierre Jolivet       for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8122a6ba4734SToby Isaac     }
8123a6ba4734SToby Isaac     b = b->next;
8124a6ba4734SToby Isaac   }
81253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8126a6ba4734SToby Isaac }
81274d6f44ffSToby Isaac 
81284d6f44ffSToby Isaac /*@C
8129bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8130a6e0b375SMatthew G. Knepley 
813120f4b53cSBarry Smith   Collective
81324d6f44ffSToby Isaac 
81334d6f44ffSToby Isaac   Input Parameters:
8134bb7acecfSBarry Smith + dm    - The `DM`
81350709b2feSToby Isaac . time  - The time
81364d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
81374d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
81384d6f44ffSToby Isaac - mode  - The insertion mode for values
81394d6f44ffSToby Isaac 
81404d6f44ffSToby Isaac   Output Parameter:
81414d6f44ffSToby Isaac . X - vector
81424d6f44ffSToby Isaac 
814320f4b53cSBarry Smith   Calling sequence of `funcs`:
81444d6f44ffSToby Isaac + dim  - The spatial dimension
81458ec8862eSJed Brown . time - The time at which to sample
81464d6f44ffSToby Isaac . x    - The coordinates
814777b739a6SMatthew Knepley . Nc   - The number of components
81484d6f44ffSToby Isaac . u    - The output field values
81494d6f44ffSToby Isaac - ctx  - optional user-defined function context
81504d6f44ffSToby Isaac 
81514d6f44ffSToby Isaac   Level: developer
81524d6f44ffSToby Isaac 
8153bb7acecfSBarry Smith   Developer Notes:
8154bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8155bb7acecfSBarry Smith 
8156bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8157bb7acecfSBarry Smith 
81581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
81594d6f44ffSToby Isaac @*/
8160a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8161d71ae5a4SJacob Faibussowitsch {
81624d6f44ffSToby Isaac   Vec localX;
81634d6f44ffSToby Isaac 
81644d6f44ffSToby Isaac   PetscFunctionBegin;
81654d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8166708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
81679566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8168f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
81699566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
81709566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
81719566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
81729566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8173708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
81743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81754d6f44ffSToby Isaac }
81764d6f44ffSToby Isaac 
8177a6e0b375SMatthew G. Knepley /*@C
8178bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8179a6e0b375SMatthew G. Knepley 
818020f4b53cSBarry Smith   Not Collective
8181a6e0b375SMatthew G. Knepley 
8182a6e0b375SMatthew G. Knepley   Input Parameters:
8183bb7acecfSBarry Smith + dm    - The `DM`
8184a6e0b375SMatthew G. Knepley . time  - The time
8185a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8186a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8187a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8188a6e0b375SMatthew G. Knepley 
8189a6e0b375SMatthew G. Knepley   Output Parameter:
8190a6e0b375SMatthew G. Knepley . localX - vector
8191a6e0b375SMatthew G. Knepley 
819220f4b53cSBarry Smith   Calling sequence of `funcs`:
8193a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8194a4e35b19SJacob Faibussowitsch . time - The current timestep
8195a6e0b375SMatthew G. Knepley . x    - The coordinates
819677b739a6SMatthew Knepley . Nc   - The number of components
8197a6e0b375SMatthew G. Knepley . u    - The output field values
8198a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8199a6e0b375SMatthew G. Knepley 
8200a6e0b375SMatthew G. Knepley   Level: developer
8201a6e0b375SMatthew G. Knepley 
8202bb7acecfSBarry Smith   Developer Notes:
8203bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8204bb7acecfSBarry Smith 
8205bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8206bb7acecfSBarry Smith 
82071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8208a6e0b375SMatthew G. Knepley @*/
8209a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8210d71ae5a4SJacob Faibussowitsch {
82114d6f44ffSToby Isaac   PetscFunctionBegin;
82124d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8213064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8214fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
82153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82164d6f44ffSToby Isaac }
82174d6f44ffSToby Isaac 
8218a6e0b375SMatthew G. Knepley /*@C
8219bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8220a6e0b375SMatthew G. Knepley 
822120f4b53cSBarry Smith   Collective
8222a6e0b375SMatthew G. Knepley 
8223a6e0b375SMatthew G. Knepley   Input Parameters:
8224bb7acecfSBarry Smith + dm     - The `DM`
8225a6e0b375SMatthew G. Knepley . time   - The time
8226a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8227a4e35b19SJacob Faibussowitsch . ids    - The ids
8228a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8229a4e35b19SJacob Faibussowitsch . comps  - The components
8230bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8231a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8232bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8233a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8234a6e0b375SMatthew G. Knepley 
8235a6e0b375SMatthew G. Knepley   Output Parameter:
8236a6e0b375SMatthew G. Knepley . X - vector
8237a6e0b375SMatthew G. Knepley 
823820f4b53cSBarry Smith   Calling sequence of `funcs`:
8239a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8240a4e35b19SJacob Faibussowitsch . time - The current timestep
8241a6e0b375SMatthew G. Knepley . x    - The coordinates
824277b739a6SMatthew Knepley . Nc   - The number of components
8243a6e0b375SMatthew G. Knepley . u    - The output field values
8244a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8245a6e0b375SMatthew G. Knepley 
8246a6e0b375SMatthew G. Knepley   Level: developer
8247a6e0b375SMatthew G. Knepley 
8248bb7acecfSBarry Smith   Developer Notes:
8249bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8250bb7acecfSBarry Smith 
8251bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8252bb7acecfSBarry Smith 
82531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8254a6e0b375SMatthew G. Knepley @*/
8255a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8256d71ae5a4SJacob Faibussowitsch {
82572c53366bSMatthew G. Knepley   Vec localX;
82582c53366bSMatthew G. Knepley 
82592c53366bSMatthew G. Knepley   PetscFunctionBegin;
82602c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
82619566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8262f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
82639566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
82649566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
82659566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
82669566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
82673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82682c53366bSMatthew G. Knepley }
82692c53366bSMatthew G. Knepley 
8270a6e0b375SMatthew G. Knepley /*@C
8271bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8272a6e0b375SMatthew G. Knepley 
827320f4b53cSBarry Smith   Not Collective
8274a6e0b375SMatthew G. Knepley 
8275a6e0b375SMatthew G. Knepley   Input Parameters:
8276bb7acecfSBarry Smith + dm     - The `DM`
8277a6e0b375SMatthew G. Knepley . time   - The time
8278bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8279a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8280a4e35b19SJacob Faibussowitsch . ids    - The ids
8281a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8282a4e35b19SJacob Faibussowitsch . comps  - The components
8283a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8284a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8285a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8286a6e0b375SMatthew G. Knepley 
8287a6e0b375SMatthew G. Knepley   Output Parameter:
8288a6e0b375SMatthew G. Knepley . localX - vector
8289a6e0b375SMatthew G. Knepley 
829020f4b53cSBarry Smith   Calling sequence of `funcs`:
8291a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8292a4e35b19SJacob Faibussowitsch . time - The current time
8293a6e0b375SMatthew G. Knepley . x    - The coordinates
829477b739a6SMatthew Knepley . Nc   - The number of components
8295a6e0b375SMatthew G. Knepley . u    - The output field values
8296a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8297a6e0b375SMatthew G. Knepley 
8298a6e0b375SMatthew G. Knepley   Level: developer
8299a6e0b375SMatthew G. Knepley 
8300bb7acecfSBarry Smith   Developer Notes:
8301bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8302bb7acecfSBarry Smith 
8303bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8304bb7acecfSBarry Smith 
83051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8306a6e0b375SMatthew G. Knepley @*/
8307a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8308d71ae5a4SJacob Faibussowitsch {
83094d6f44ffSToby Isaac   PetscFunctionBegin;
83104d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8311064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8312fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
83133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83144d6f44ffSToby Isaac }
83152716604bSToby Isaac 
8316a6e0b375SMatthew G. Knepley /*@C
8317bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8318a6e0b375SMatthew G. Knepley 
831920f4b53cSBarry Smith   Not Collective
8320a6e0b375SMatthew G. Knepley 
8321a6e0b375SMatthew G. Knepley   Input Parameters:
8322bb7acecfSBarry Smith + dm     - The `DM`
8323a6e0b375SMatthew G. Knepley . time   - The time
832420f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8325a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8326a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8327a6e0b375SMatthew G. Knepley 
8328a6e0b375SMatthew G. Knepley   Output Parameter:
8329a6e0b375SMatthew G. Knepley . localX - The output vector
8330a6e0b375SMatthew G. Knepley 
833120f4b53cSBarry Smith   Calling sequence of `funcs`:
8332a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8333a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8334a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8335a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8336a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8337a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8338a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8339a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8340a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8341a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8342a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8343a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8344a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8345a6e0b375SMatthew G. Knepley . t            - The current time
8346a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8347a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8348a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8349a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8350a6e0b375SMatthew G. Knepley 
835173ff1848SBarry Smith   Level: intermediate
835273ff1848SBarry Smith 
8353bb7acecfSBarry Smith   Note:
8354bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8355bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8356bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8357a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8358a6e0b375SMatthew G. Knepley 
8359bb7acecfSBarry Smith   Developer Notes:
8360bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8361bb7acecfSBarry Smith 
8362bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8363bb7acecfSBarry Smith 
8364a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8365a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8366a6e0b375SMatthew G. Knepley @*/
8367a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8368d71ae5a4SJacob Faibussowitsch {
83698c6c5593SMatthew G. Knepley   PetscFunctionBegin;
83708c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8371eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
83728c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8373fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
83743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83758c6c5593SMatthew G. Knepley }
83768c6c5593SMatthew G. Knepley 
8377a6e0b375SMatthew G. Knepley /*@C
8378a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8379a6e0b375SMatthew G. Knepley 
838020f4b53cSBarry Smith   Not Collective
8381a6e0b375SMatthew G. Knepley 
8382a6e0b375SMatthew G. Knepley   Input Parameters:
8383bb7acecfSBarry Smith + dm     - The `DM`
8384a6e0b375SMatthew G. Knepley . time   - The time
8385bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8386a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8387a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8388bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
838920f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8390a6e0b375SMatthew G. Knepley . localU - The input field vector
8391a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8392a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8393a6e0b375SMatthew G. Knepley 
8394a6e0b375SMatthew G. Knepley   Output Parameter:
8395a6e0b375SMatthew G. Knepley . localX - The output vector
8396a6e0b375SMatthew G. Knepley 
839720f4b53cSBarry Smith   Calling sequence of `funcs`:
8398a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8399a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8400a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8401a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8402a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8403a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8404a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8405a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8406a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8407a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8408a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8409a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8410a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8411a6e0b375SMatthew G. Knepley . t            - The current time
8412a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8413a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8414a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8415a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8416a6e0b375SMatthew G. Knepley 
841773ff1848SBarry Smith   Level: intermediate
841873ff1848SBarry Smith 
8419bb7acecfSBarry Smith   Note:
8420bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8421bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8422bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8423a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8424a6e0b375SMatthew G. Knepley 
8425bb7acecfSBarry Smith   Developer Notes:
8426bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8427bb7acecfSBarry Smith 
8428bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8429bb7acecfSBarry Smith 
84301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8431a6e0b375SMatthew G. Knepley @*/
8432a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8433d71ae5a4SJacob Faibussowitsch {
84348c6c5593SMatthew G. Knepley   PetscFunctionBegin;
84358c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8436064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8437064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8438fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
84393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84408c6c5593SMatthew G. Knepley }
84418c6c5593SMatthew G. Knepley 
84422716604bSToby Isaac /*@C
8443d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8444d29d7c6eSMatthew G. Knepley 
844520f4b53cSBarry Smith   Not Collective
8446d29d7c6eSMatthew G. Knepley 
8447d29d7c6eSMatthew G. Knepley   Input Parameters:
8448bb7acecfSBarry Smith + dm     - The `DM`
8449d29d7c6eSMatthew G. Knepley . time   - The time
8450bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8451d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8452d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8453bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
845420f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8455d29d7c6eSMatthew G. Knepley . U      - The input field vector
8456d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8457d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8458d29d7c6eSMatthew G. Knepley 
8459d29d7c6eSMatthew G. Knepley   Output Parameter:
8460d29d7c6eSMatthew G. Knepley . X - The output vector
8461d29d7c6eSMatthew G. Knepley 
846220f4b53cSBarry Smith   Calling sequence of `funcs`:
8463d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8464d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8465d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8466d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8467d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8468d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8469d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8470d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8471d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8472d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8473d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8474d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8475d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8476d29d7c6eSMatthew G. Knepley . t            - The current time
8477d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8478d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8479d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8480d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8481d29d7c6eSMatthew G. Knepley 
848273ff1848SBarry Smith   Level: intermediate
848373ff1848SBarry Smith 
8484bb7acecfSBarry Smith   Note:
8485bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8486bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8487bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8488d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8489d29d7c6eSMatthew G. Knepley 
8490bb7acecfSBarry Smith   Developer Notes:
8491bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8492bb7acecfSBarry Smith 
8493bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8494bb7acecfSBarry Smith 
84951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8496d29d7c6eSMatthew G. Knepley @*/
8497a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8498d71ae5a4SJacob Faibussowitsch {
8499d29d7c6eSMatthew G. Knepley   DM  dmIn;
8500d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8501d29d7c6eSMatthew G. Knepley 
8502d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8503d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8504d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8505d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8506d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8507f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
850872fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
850972fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8510d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8511d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8512d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8513d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8514d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
85153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8516d29d7c6eSMatthew G. Knepley }
8517d29d7c6eSMatthew G. Knepley 
8518d29d7c6eSMatthew G. Knepley /*@C
8519ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8520ece3a9fcSMatthew G. Knepley 
852120f4b53cSBarry Smith   Not Collective
8522ece3a9fcSMatthew G. Knepley 
8523ece3a9fcSMatthew G. Knepley   Input Parameters:
8524bb7acecfSBarry Smith + dm     - The `DM`
8525ece3a9fcSMatthew G. Knepley . time   - The time
8526bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8527ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8528ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8529bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
853020f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8531ece3a9fcSMatthew G. Knepley . localU - The input field vector
8532ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8533ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8534ece3a9fcSMatthew G. Knepley 
8535ece3a9fcSMatthew G. Knepley   Output Parameter:
8536ece3a9fcSMatthew G. Knepley . localX - The output vector
8537ece3a9fcSMatthew G. Knepley 
853820f4b53cSBarry Smith   Calling sequence of `funcs`:
8539ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8540ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8541ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8542ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8543ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8544ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8545ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8546ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8547ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8548ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8549ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8550ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8551ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8552ece3a9fcSMatthew G. Knepley . t            - The current time
8553ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8554ece3a9fcSMatthew G. Knepley . n            - The face normal
8555ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8556ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8557ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8558ece3a9fcSMatthew G. Knepley 
855973ff1848SBarry Smith   Level: intermediate
856073ff1848SBarry Smith 
8561ece3a9fcSMatthew G. Knepley   Note:
8562bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8563bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8564bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8565ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8566ece3a9fcSMatthew G. Knepley 
8567bb7acecfSBarry Smith   Developer Notes:
8568bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8569bb7acecfSBarry Smith 
8570bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8571bb7acecfSBarry Smith 
85721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8573ece3a9fcSMatthew G. Knepley @*/
8574a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8575d71ae5a4SJacob Faibussowitsch {
8576ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8577ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8578064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8579064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8580fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8582ece3a9fcSMatthew G. Knepley }
8583ece3a9fcSMatthew G. Knepley 
8584ece3a9fcSMatthew G. Knepley /*@C
85852716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
85862716604bSToby Isaac 
858720f4b53cSBarry Smith   Collective
8588bb7acecfSBarry Smith 
85892716604bSToby Isaac   Input Parameters:
8590bb7acecfSBarry Smith + dm    - The `DM`
85910709b2feSToby Isaac . time  - The time
85922716604bSToby Isaac . funcs - The functions to evaluate for each field component
85932716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8594574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
85952716604bSToby Isaac 
85962716604bSToby Isaac   Output Parameter:
85972716604bSToby Isaac . diff - The diff ||u - u_h||_2
85982716604bSToby Isaac 
85992716604bSToby Isaac   Level: developer
86002716604bSToby Isaac 
8601bb7acecfSBarry Smith   Developer Notes:
8602bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8603bb7acecfSBarry Smith 
8604bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8605bb7acecfSBarry Smith 
86061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
86072716604bSToby Isaac @*/
8608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8609d71ae5a4SJacob Faibussowitsch {
86102716604bSToby Isaac   PetscFunctionBegin;
86112716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8612b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8613fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
86143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86152716604bSToby Isaac }
8616b698f381SToby Isaac 
8617b698f381SToby Isaac /*@C
8618b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8619b698f381SToby Isaac 
862020f4b53cSBarry Smith   Collective
8621d083f849SBarry Smith 
8622b698f381SToby Isaac   Input Parameters:
8623bb7acecfSBarry Smith + dm    - The `DM`
8624a4e35b19SJacob Faibussowitsch . time  - The time
8625b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8626b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8627574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8628b698f381SToby Isaac - n     - The vector to project along
8629b698f381SToby Isaac 
8630b698f381SToby Isaac   Output Parameter:
8631b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8632b698f381SToby Isaac 
8633b698f381SToby Isaac   Level: developer
8634b698f381SToby Isaac 
8635bb7acecfSBarry Smith   Developer Notes:
8636bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8637bb7acecfSBarry Smith 
8638bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8639bb7acecfSBarry Smith 
86401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8641b698f381SToby Isaac @*/
8642d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8643d71ae5a4SJacob Faibussowitsch {
8644b698f381SToby Isaac   PetscFunctionBegin;
8645b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8646b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8647fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
86483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8649b698f381SToby Isaac }
8650b698f381SToby Isaac 
86512a16baeaSToby Isaac /*@C
86522a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
86532a16baeaSToby Isaac 
865420f4b53cSBarry Smith   Collective
8655d083f849SBarry Smith 
86562a16baeaSToby Isaac   Input Parameters:
8657bb7acecfSBarry Smith + dm    - The `DM`
86582a16baeaSToby Isaac . time  - The time
86592a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
86602a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8661574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
86622a16baeaSToby Isaac 
86632a16baeaSToby Isaac   Output Parameter:
86642a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
86652a16baeaSToby Isaac 
86662a16baeaSToby Isaac   Level: developer
86672a16baeaSToby Isaac 
8668bb7acecfSBarry Smith   Developer Notes:
8669bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8670bb7acecfSBarry Smith 
8671bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8672bb7acecfSBarry Smith 
867342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
86742a16baeaSToby Isaac @*/
8675d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8676d71ae5a4SJacob Faibussowitsch {
86772a16baeaSToby Isaac   PetscFunctionBegin;
86782a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
86792a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8680fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
86813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86822a16baeaSToby Isaac }
86832a16baeaSToby Isaac 
8684df0b854cSToby Isaac /*@C
8685bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8686502a2867SDave May 
8687502a2867SDave May   Not Collective
8688502a2867SDave May 
8689502a2867SDave May   Input Parameter:
8690bb7acecfSBarry Smith . dm - The `DM`
8691502a2867SDave May 
86920a19bb7dSprj-   Output Parameters:
86930a19bb7dSprj- + nranks - the number of neighbours
86940a19bb7dSprj- - ranks  - the neighbors ranks
8695502a2867SDave May 
86969bdbcad8SBarry Smith   Level: beginner
86979bdbcad8SBarry Smith 
8698bb7acecfSBarry Smith   Note:
8699bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8700502a2867SDave May 
87011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8702502a2867SDave May @*/
8703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8704d71ae5a4SJacob Faibussowitsch {
8705502a2867SDave May   PetscFunctionBegin;
8706502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8707fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
87083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8709502a2867SDave May }
8710502a2867SDave May 
8711531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8712531c7667SBarry Smith 
8713531c7667SBarry Smith /*
8714531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
87152b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8716531c7667SBarry Smith */
871766976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8718d71ae5a4SJacob Faibussowitsch {
8719531c7667SBarry Smith   PetscFunctionBegin;
8720531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8721531c7667SBarry Smith     Vec x1local;
8722531c7667SBarry Smith     DM  dm;
87239566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87247a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
87259566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
87269566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
87279566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8728531c7667SBarry Smith     x1 = x1local;
8729531c7667SBarry Smith   }
87309566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8731531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8732531c7667SBarry Smith     DM dm;
87339566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87349566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8735531c7667SBarry Smith   }
87363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8737531c7667SBarry Smith }
8738531c7667SBarry Smith 
8739531c7667SBarry Smith /*@
8740bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8741531c7667SBarry Smith 
8742a4e35b19SJacob Faibussowitsch   Input Parameters:
8743a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8744a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8745531c7667SBarry Smith 
87469bdbcad8SBarry Smith   Level: advanced
87479bdbcad8SBarry Smith 
874873ff1848SBarry Smith   Developer Note:
874973ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8750531c7667SBarry Smith 
87511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8752531c7667SBarry Smith @*/
8753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8754d71ae5a4SJacob Faibussowitsch {
8755531c7667SBarry Smith   PetscFunctionBegin;
8756531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
87573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8758531c7667SBarry Smith }
87598320bc6fSPatrick Sanan 
87608320bc6fSPatrick Sanan /*@
8761bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
87628320bc6fSPatrick Sanan 
87638320bc6fSPatrick Sanan   Collective
87648320bc6fSPatrick Sanan 
87658320bc6fSPatrick Sanan   Input Parameters:
8766bb7acecfSBarry Smith + dm1 - the first `DM`
8767bb7acecfSBarry Smith - dm2 - the second `DM`
87688320bc6fSPatrick Sanan 
87698320bc6fSPatrick Sanan   Output Parameters:
8770bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8771bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
87728320bc6fSPatrick Sanan 
877320f4b53cSBarry Smith   Level: advanced
877420f4b53cSBarry Smith 
87758320bc6fSPatrick Sanan   Notes:
8776bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
87773d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
87788320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8779bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
87803d862458SPatrick Sanan   decomposition, but hold different data.
87818320bc6fSPatrick Sanan 
87828320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8783bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
87848320bc6fSPatrick Sanan 
8785bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
87868320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
87878320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8788bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
87898320bc6fSPatrick Sanan 
8790bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8791bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
87928320bc6fSPatrick Sanan .vb
87938320bc6fSPatrick Sanan   ...
87949566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
87958320bc6fSPatrick Sanan   if (set && compatible)  {
87969566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
87979566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
87989566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
87998320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
88008320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
88018320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
88028320bc6fSPatrick Sanan       }
88038320bc6fSPatrick Sanan     }
88049566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
88059566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
88068320bc6fSPatrick Sanan   } else {
88078320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
88088320bc6fSPatrick Sanan   }
88098320bc6fSPatrick Sanan   ...
88108320bc6fSPatrick Sanan .ve
88118320bc6fSPatrick Sanan 
8812bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
88138320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
88148320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
88158320bc6fSPatrick Sanan   always check the "set" output parameter.
88168320bc6fSPatrick Sanan 
8817bb7acecfSBarry Smith   A `DM` is always compatible with itself.
88188320bc6fSPatrick Sanan 
8819bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
88208320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
88218320bc6fSPatrick Sanan   incompatible.
88228320bc6fSPatrick Sanan 
88238320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8824bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
88258320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
88268320bc6fSPatrick Sanan 
882773ff1848SBarry Smith   Developer Note:
8828bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
88293d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8830a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8831bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
88328320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
88333d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8834bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
88358320bc6fSPatrick Sanan 
88361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
88378320bc6fSPatrick Sanan @*/
8838d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8839d71ae5a4SJacob Faibussowitsch {
88408320bc6fSPatrick Sanan   PetscMPIInt compareResult;
88418320bc6fSPatrick Sanan   DMType      type, type2;
88428320bc6fSPatrick Sanan   PetscBool   sameType;
88438320bc6fSPatrick Sanan 
88448320bc6fSPatrick Sanan   PetscFunctionBegin;
8845a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
88468320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
88478320bc6fSPatrick Sanan 
88488320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8849a5bc1bf3SBarry Smith   if (dm1 == dm2) {
88508320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88518320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
88523ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88538320bc6fSPatrick Sanan   }
88548320bc6fSPatrick Sanan 
88558320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
88568320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
88578320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
88588320bc6fSPatrick Sanan      determined by the implementation-specific logic */
88599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
88608320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
88618320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
88628320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
88633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
88648320bc6fSPatrick Sanan   }
88658320bc6fSPatrick Sanan 
88668320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8867a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8868dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
88693ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
88708320bc6fSPatrick Sanan   }
88718320bc6fSPatrick Sanan 
8872a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
88738320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
88749566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
88759566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
88769566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
88778320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8878dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
88798320bc6fSPatrick Sanan   } else {
88808320bc6fSPatrick Sanan     *set = PETSC_FALSE;
88818320bc6fSPatrick Sanan   }
88823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
88838320bc6fSPatrick Sanan }
8884c0f0dcc3SMatthew G. Knepley 
8885c0f0dcc3SMatthew G. Knepley /*@C
8886bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8887c0f0dcc3SMatthew G. Knepley 
888820f4b53cSBarry Smith   Logically Collective
8889c0f0dcc3SMatthew G. Knepley 
8890c0f0dcc3SMatthew G. Knepley   Input Parameters:
889160225df5SJacob Faibussowitsch + dm             - the `DM`
8892c0f0dcc3SMatthew G. Knepley . f              - the monitor function
889320f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
889449abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence
8895c0f0dcc3SMatthew G. Knepley 
889620f4b53cSBarry Smith   Options Database Key:
889760225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8898c0f0dcc3SMatthew G. Knepley                        does not cancel those set via the options database.
8899c0f0dcc3SMatthew G. Knepley 
89009bdbcad8SBarry Smith   Level: intermediate
89019bdbcad8SBarry Smith 
8902bb7acecfSBarry Smith   Note:
8903c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8904bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8905c0f0dcc3SMatthew G. Knepley   order in which they were set.
8906c0f0dcc3SMatthew G. Knepley 
890773ff1848SBarry Smith   Fortran Note:
8908bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8909bb7acecfSBarry Smith 
891073ff1848SBarry Smith   Developer Note:
8911bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8912c0f0dcc3SMatthew G. Knepley 
891349abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn`
8914c0f0dcc3SMatthew G. Knepley @*/
891549abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy)
8916d71ae5a4SJacob Faibussowitsch {
8917c0f0dcc3SMatthew G. Knepley   PetscInt m;
8918c0f0dcc3SMatthew G. Knepley 
8919c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8920c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8921c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8922c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8923c0f0dcc3SMatthew G. Knepley 
89249566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
89253ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8926c0f0dcc3SMatthew G. Knepley   }
89277a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8928c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8929c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8930835f2295SStefano Zampini   dm->monitorcontext[dm->numbermonitors++] = mctx;
89313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8932c0f0dcc3SMatthew G. Knepley }
8933c0f0dcc3SMatthew G. Knepley 
8934c0f0dcc3SMatthew G. Knepley /*@
8935bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8936c0f0dcc3SMatthew G. Knepley 
893720f4b53cSBarry Smith   Logically Collective
8938c0f0dcc3SMatthew G. Knepley 
8939c0f0dcc3SMatthew G. Knepley   Input Parameter:
8940c0f0dcc3SMatthew G. Knepley . dm - the DM
8941c0f0dcc3SMatthew G. Knepley 
8942c0f0dcc3SMatthew G. Knepley   Options Database Key:
8943c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8944bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8945c0f0dcc3SMatthew G. Knepley   set via the options database
8946c0f0dcc3SMatthew G. Knepley 
89479bdbcad8SBarry Smith   Level: intermediate
89489bdbcad8SBarry Smith 
8949bb7acecfSBarry Smith   Note:
8950bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8951c0f0dcc3SMatthew G. Knepley 
89521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8953c0f0dcc3SMatthew G. Knepley @*/
8954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8955d71ae5a4SJacob Faibussowitsch {
8956c0f0dcc3SMatthew G. Knepley   PetscInt m;
8957c0f0dcc3SMatthew G. Knepley 
8958c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8959c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8960c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
89619566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8962c0f0dcc3SMatthew G. Knepley   }
8963c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
89643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8965c0f0dcc3SMatthew G. Knepley }
8966c0f0dcc3SMatthew G. Knepley 
8967c0f0dcc3SMatthew G. Knepley /*@C
8968c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8969c0f0dcc3SMatthew G. Knepley 
897020f4b53cSBarry Smith   Collective
8971c0f0dcc3SMatthew G. Knepley 
8972c0f0dcc3SMatthew G. Knepley   Input Parameters:
8973bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
8974c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
8975c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
8976c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
897749abdd8aSBarry Smith . monitor      - the monitor function, this must use a `PetscViewerFormat` as its context
8978bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8979c0f0dcc3SMatthew G. Knepley 
8980c0f0dcc3SMatthew G. Knepley   Output Parameter:
8981c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8982c0f0dcc3SMatthew G. Knepley 
8983c0f0dcc3SMatthew G. Knepley   Level: developer
8984c0f0dcc3SMatthew G. Knepley 
8985648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8986db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
898760225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
8988db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8989c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8990db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8991bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8992c0f0dcc3SMatthew G. Knepley @*/
8993d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8994d71ae5a4SJacob Faibussowitsch {
8995c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8996c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8997c0f0dcc3SMatthew G. Knepley 
8998c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8999c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9000648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
9001c0f0dcc3SMatthew G. Knepley   if (*flg) {
9002c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
9003c0f0dcc3SMatthew G. Knepley 
90049566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
9005648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
90069566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
9007835f2295SStefano Zampini     PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy));
9008c0f0dcc3SMatthew G. Knepley   }
90093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9010c0f0dcc3SMatthew G. Knepley }
9011c0f0dcc3SMatthew G. Knepley 
9012c0f0dcc3SMatthew G. Knepley /*@
9013c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
9014c0f0dcc3SMatthew G. Knepley 
901520f4b53cSBarry Smith   Collective
9016c0f0dcc3SMatthew G. Knepley 
90172fe279fdSBarry Smith   Input Parameter:
9018bb7acecfSBarry Smith . dm - The `DM`
9019c0f0dcc3SMatthew G. Knepley 
9020c0f0dcc3SMatthew G. Knepley   Level: developer
9021c0f0dcc3SMatthew G. Knepley 
902273ff1848SBarry Smith   Developer Note:
9023a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
9024a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
9025a4e35b19SJacob Faibussowitsch   concept of discretization.
9026bb7acecfSBarry Smith 
90271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
9028c0f0dcc3SMatthew G. Knepley @*/
9029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
9030d71ae5a4SJacob Faibussowitsch {
9031c0f0dcc3SMatthew G. Knepley   PetscInt m;
9032c0f0dcc3SMatthew G. Knepley 
9033c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
90343ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
9035c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
903648a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
90373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9038c0f0dcc3SMatthew G. Knepley }
90392e4af2aeSMatthew G. Knepley 
90402e4af2aeSMatthew G. Knepley /*@
9041bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
90422e4af2aeSMatthew G. Knepley 
904320f4b53cSBarry Smith   Collective
90442e4af2aeSMatthew G. Knepley 
90452e4af2aeSMatthew G. Knepley   Input Parameters:
9046bb7acecfSBarry Smith + dm  - The `DM`
90476b867d5aSJose E. Roman - sol - The solution vector
90482e4af2aeSMatthew G. Knepley 
90496b867d5aSJose E. Roman   Input/Output Parameter:
905020f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
90516b867d5aSJose E. Roman            contains the error in each field
90526b867d5aSJose E. Roman 
90536b867d5aSJose E. Roman   Output Parameter:
905420f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
905520f4b53cSBarry Smith 
905620f4b53cSBarry Smith   Level: developer
90572e4af2aeSMatthew G. Knepley 
9058bb7acecfSBarry Smith   Note:
9059bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
90602e4af2aeSMatthew G. Knepley 
90611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
90622e4af2aeSMatthew G. Knepley @*/
9063d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
9064d71ae5a4SJacob Faibussowitsch {
90652e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
90662e4af2aeSMatthew G. Knepley   void    **ctxs;
90672e4af2aeSMatthew G. Knepley   PetscReal time;
90682e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
90692e4af2aeSMatthew G. Knepley 
90702e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
90719566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
90729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
90739566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
90742e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
90752e4af2aeSMatthew G. Knepley     PetscDS         ds;
90762e4af2aeSMatthew G. Knepley     DMLabel         label;
90772e4af2aeSMatthew G. Knepley     IS              fieldIS;
90782e4af2aeSMatthew G. Knepley     const PetscInt *fields;
90792e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
90802e4af2aeSMatthew G. Knepley 
908107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
90829566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
90839566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
90842e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
90852e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
90869566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
90872e4af2aeSMatthew G. Knepley     }
90889566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
90892e4af2aeSMatthew G. Knepley   }
9090ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
90919566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
90929566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
90932e4af2aeSMatthew G. Knepley   if (errorVec) {
90942e4af2aeSMatthew G. Knepley     DM             edm;
90952e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
90962e4af2aeSMatthew G. Knepley     PetscBool      simplex;
90972e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
90982e4af2aeSMatthew G. Knepley 
90999566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
91009566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
91019566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
91029566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
91032e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
91049566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
91052e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
91062e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
91072e4af2aeSMatthew G. Knepley       PetscQuadrature q;
91082e4af2aeSMatthew G. Knepley       const char     *name;
91092e4af2aeSMatthew G. Knepley 
91109566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
91119566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
91129566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
91139566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
91149566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
91159566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
91169566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
91179566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
91182e4af2aeSMatthew G. Knepley     }
91199566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
91202e4af2aeSMatthew G. Knepley 
91219566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
91229566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
91239566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
91249566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
91252e4af2aeSMatthew G. Knepley   }
91269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
91273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91282e4af2aeSMatthew G. Knepley }
91299a2a23afSMatthew G. Knepley 
91309a2a23afSMatthew G. Knepley /*@
9131bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
91329a2a23afSMatthew G. Knepley 
913320f4b53cSBarry Smith   Not Collective
91349a2a23afSMatthew G. Knepley 
91359a2a23afSMatthew G. Knepley   Input Parameter:
9136bb7acecfSBarry Smith . dm - The `DM`
91379a2a23afSMatthew G. Knepley 
91389a2a23afSMatthew G. Knepley   Output Parameter:
9139a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
91409a2a23afSMatthew G. Knepley 
91419a2a23afSMatthew G. Knepley   Level: advanced
91429a2a23afSMatthew G. Knepley 
9143e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
91449a2a23afSMatthew G. Knepley @*/
9145d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9146d71ae5a4SJacob Faibussowitsch {
91479a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91489a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91499566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
91503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91519a2a23afSMatthew G. Knepley }
91529a2a23afSMatthew G. Knepley 
91539a2a23afSMatthew G. Knepley /*@
9154ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
91559a2a23afSMatthew G. Knepley 
915620f4b53cSBarry Smith   Not Collective
91579a2a23afSMatthew G. Knepley 
91589a2a23afSMatthew G. Knepley   Input Parameters:
9159bb7acecfSBarry Smith + dm    - The `DM`
9160bb7acecfSBarry Smith . label - The `DMLabel`
9161ac17215fSMatthew G. Knepley . value - The label value indicating the region
9162ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
91639a2a23afSMatthew G. Knepley 
91649a2a23afSMatthew G. Knepley   Output Parameter:
9165bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
91669a2a23afSMatthew G. Knepley 
91679bdbcad8SBarry Smith   Level: advanced
91689bdbcad8SBarry Smith 
9169bb7acecfSBarry Smith   Note:
9170bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
917104c51a94SMatthew G. Knepley 
9172e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
91739a2a23afSMatthew G. Knepley @*/
9174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9175d71ae5a4SJacob Faibussowitsch {
9176ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
917704c51a94SMatthew G. Knepley   PetscBool       has;
91789a2a23afSMatthew G. Knepley 
91799a2a23afSMatthew G. Knepley   PetscFunctionBegin;
91809a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
91819a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
91829a2a23afSMatthew G. Knepley   key.label = label;
91839a2a23afSMatthew G. Knepley   key.value = value;
9184ac17215fSMatthew G. Knepley   key.part  = part;
91859566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
91869566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
91879566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
91883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91899a2a23afSMatthew G. Knepley }
91909a2a23afSMatthew G. Knepley 
91919a2a23afSMatthew G. Knepley /*@
9192bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
91939a2a23afSMatthew G. Knepley 
919420f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
91959a2a23afSMatthew G. Knepley 
91969a2a23afSMatthew G. Knepley   Input Parameters:
9197bb7acecfSBarry Smith + dm    - The `DM`
9198bb7acecfSBarry Smith . label - The `DMLabel`
91999a2a23afSMatthew G. Knepley . value - The label value indicating the region
9200ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9201bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
92029a2a23afSMatthew G. Knepley 
92039a2a23afSMatthew G. Knepley   Level: advanced
92049a2a23afSMatthew G. Knepley 
9205e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
92069a2a23afSMatthew G. Knepley @*/
9207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9208d71ae5a4SJacob Faibussowitsch {
92099a2a23afSMatthew G. Knepley   Vec             old;
92109a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
92119a2a23afSMatthew G. Knepley 
92129a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92139a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92149a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
92159a2a23afSMatthew G. Knepley   key.label = label;
92169a2a23afSMatthew G. Knepley   key.value = value;
9217ac17215fSMatthew G. Knepley   key.part  = part;
92189566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
92199566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
92209566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
92219566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9222d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
92233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92249a2a23afSMatthew G. Knepley }
92259a2a23afSMatthew G. Knepley 
9226cc4c1da9SBarry Smith /*@
9227bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
92289a2a23afSMatthew G. Knepley 
922920f4b53cSBarry Smith   Not Collective
92309a2a23afSMatthew G. Knepley 
92319a2a23afSMatthew G. Knepley   Input Parameter:
9232bb7acecfSBarry Smith . dm - The `DM`
92339a2a23afSMatthew G. Knepley 
92349a2a23afSMatthew G. Knepley   Output Parameters:
9235bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9236bb7acecfSBarry Smith . values - The label values for each `Vec`
9237bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
92389a2a23afSMatthew G. Knepley 
92399bdbcad8SBarry Smith   Level: advanced
92409bdbcad8SBarry Smith 
9241bb7acecfSBarry Smith   Note:
9242bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
92439a2a23afSMatthew G. Knepley 
9244e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
92459a2a23afSMatthew G. Knepley @*/
9246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9247d71ae5a4SJacob Faibussowitsch {
92489a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
92499a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
92509a2a23afSMatthew G. Knepley 
92519a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92529a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92534f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
92544f572ea9SToby Isaac   PetscAssertPointer(values, 3);
92554f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
92569566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
92579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
92589566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
92599371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
92609371c9d4SSatish Balay     labels[i] = keys[i].label;
92619371c9d4SSatish Balay     values[i] = keys[i].value;
92629371c9d4SSatish Balay     parts[i]  = keys[i].part;
92639371c9d4SSatish Balay   }
92649566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
92653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92669a2a23afSMatthew G. Knepley }
92679a2a23afSMatthew G. Knepley 
92689a2a23afSMatthew G. Knepley /*@
9269bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
92709a2a23afSMatthew G. Knepley 
927120f4b53cSBarry Smith   Not Collective
92729a2a23afSMatthew G. Knepley 
92739a2a23afSMatthew G. Knepley   Input Parameter:
9274bb7acecfSBarry Smith . dm - The `DM`
92759a2a23afSMatthew G. Knepley 
92769a2a23afSMatthew G. Knepley   Output Parameter:
9277bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
92789a2a23afSMatthew G. Knepley 
92799a2a23afSMatthew G. Knepley   Level: advanced
92809a2a23afSMatthew G. Knepley 
9281bb7acecfSBarry Smith   Note:
9282bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9283bb7acecfSBarry Smith 
9284e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
92859a2a23afSMatthew G. Knepley @*/
9286d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9287d71ae5a4SJacob Faibussowitsch {
92889a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92899a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9290d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9291d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9292e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9293e4d5475eSStefano Zampini 
9294e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
92959566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9296d705d0eaSStefano Zampini   {
9297d705d0eaSStefano Zampini     Vec     *auxData;
9298d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9299d705d0eaSStefano Zampini 
9300d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9301d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9302d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9303d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9304d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9305e4d5475eSStefano Zampini   }
9306e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9307e4d5475eSStefano Zampini }
9308e4d5475eSStefano Zampini 
9309e4d5475eSStefano Zampini /*@
9310e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9311e4d5475eSStefano Zampini 
9312e4d5475eSStefano Zampini   Not Collective
9313e4d5475eSStefano Zampini 
9314e4d5475eSStefano Zampini   Input Parameter:
9315e4d5475eSStefano Zampini . dm - The `DM`
9316e4d5475eSStefano Zampini 
9317e4d5475eSStefano Zampini   Level: advanced
9318e4d5475eSStefano Zampini 
9319e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9320e4d5475eSStefano Zampini @*/
9321e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9322e4d5475eSStefano Zampini {
9323e4d5475eSStefano Zampini   Vec     *auxData;
9324e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9325e4d5475eSStefano Zampini 
9326e4d5475eSStefano Zampini   PetscFunctionBegin;
9327e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9328d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9329e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9330d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9331d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9332e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9333e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
93343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
93359a2a23afSMatthew G. Knepley }
9336b5a892a1SMatthew G. Knepley 
9337cc4c1da9SBarry Smith /*@
9338bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9339b5a892a1SMatthew G. Knepley 
934020f4b53cSBarry Smith   Not Collective
9341b5a892a1SMatthew G. Knepley 
9342b5a892a1SMatthew G. Knepley   Input Parameters:
9343bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9344b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9345b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9346b5a892a1SMatthew G. Knepley 
9347b5a892a1SMatthew G. Knepley   Output Parameters:
9348bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9349b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9350b5a892a1SMatthew G. Knepley 
9351b5a892a1SMatthew G. Knepley   Level: advanced
9352b5a892a1SMatthew G. Knepley 
9353bb7acecfSBarry Smith   Note:
9354bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9355bb7acecfSBarry Smith 
935685036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9357bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9358bb7acecfSBarry Smith 
9359bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9360bb7acecfSBarry Smith 
93611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9362b5a892a1SMatthew G. Knepley @*/
9363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9364d71ae5a4SJacob Faibussowitsch {
9365b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
936685036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9367b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9368b5a892a1SMatthew G. Knepley 
9369b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
93709371c9d4SSatish Balay   if (!nO) {
93719371c9d4SSatish Balay     *ornt  = 0;
93729371c9d4SSatish Balay     *found = PETSC_TRUE;
93733ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
93749371c9d4SSatish Balay   }
9375b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
937685036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9377b5a892a1SMatthew G. Knepley 
93789371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
93799371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
93809371c9d4SSatish Balay     if (c == cS) {
93819371c9d4SSatish Balay       *ornt = o;
93829371c9d4SSatish Balay       break;
93839371c9d4SSatish Balay     }
9384b5a892a1SMatthew G. Knepley   }
9385b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
93863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9387b5a892a1SMatthew G. Knepley }
9388b5a892a1SMatthew G. Knepley 
9389cc4c1da9SBarry Smith /*@
9390bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9391b5a892a1SMatthew G. Knepley 
939220f4b53cSBarry Smith   Not Collective
9393b5a892a1SMatthew G. Knepley 
9394b5a892a1SMatthew G. Knepley   Input Parameters:
9395bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9396b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9397b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9398b5a892a1SMatthew G. Knepley 
93992fe279fdSBarry Smith   Output Parameter:
9400bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9401b5a892a1SMatthew G. Knepley 
9402b5a892a1SMatthew G. Knepley   Level: advanced
9403b5a892a1SMatthew G. Knepley 
9404bb7acecfSBarry Smith   Note:
9405bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9406bb7acecfSBarry Smith 
940773ff1848SBarry Smith   Developer Note:
9408bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9409bb7acecfSBarry Smith 
94101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9411b5a892a1SMatthew G. Knepley @*/
9412d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9413d71ae5a4SJacob Faibussowitsch {
9414b5a892a1SMatthew G. Knepley   PetscBool found;
9415b5a892a1SMatthew G. Knepley 
9416b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94179566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
94187a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9420b5a892a1SMatthew G. Knepley }
9421b5a892a1SMatthew G. Knepley 
9422cc4c1da9SBarry Smith /*@
9423bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9424b5a892a1SMatthew G. Knepley 
942520f4b53cSBarry Smith   Not Collective
9426b5a892a1SMatthew G. Knepley 
9427b5a892a1SMatthew G. Knepley   Input Parameters:
9428bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9429b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9430b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9431b5a892a1SMatthew G. Knepley 
9432b5a892a1SMatthew G. Knepley   Output Parameters:
9433bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9434b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9435b5a892a1SMatthew G. Knepley 
9436b5a892a1SMatthew G. Knepley   Level: advanced
9437b5a892a1SMatthew G. Knepley 
943873ff1848SBarry Smith   Notes:
9439bb7acecfSBarry Smith   An arrangement is a vertex order
9440bb7acecfSBarry Smith 
944185036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9442bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9443bb7acecfSBarry Smith 
9444bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9445bb7acecfSBarry Smith 
944685036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9447b5a892a1SMatthew G. Knepley @*/
9448d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9449d71ae5a4SJacob Faibussowitsch {
9450b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
945185036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9452b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9453b5a892a1SMatthew G. Knepley 
9454b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94559371c9d4SSatish Balay   if (!nO) {
94569371c9d4SSatish Balay     *ornt  = 0;
94579371c9d4SSatish Balay     *found = PETSC_TRUE;
94583ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
94599371c9d4SSatish Balay   }
9460b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
946185036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9462b5a892a1SMatthew G. Knepley 
94639371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
94649371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
94659371c9d4SSatish Balay     if (c == cS) {
94669371c9d4SSatish Balay       *ornt = o;
94679371c9d4SSatish Balay       break;
94689371c9d4SSatish Balay     }
9469b5a892a1SMatthew G. Knepley   }
9470b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
94713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9472b5a892a1SMatthew G. Knepley }
9473b5a892a1SMatthew G. Knepley 
9474cc4c1da9SBarry Smith /*@
9475bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9476b5a892a1SMatthew G. Knepley 
947720f4b53cSBarry Smith   Not Collective
9478b5a892a1SMatthew G. Knepley 
9479b5a892a1SMatthew G. Knepley   Input Parameters:
9480bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9481b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9482b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9483b5a892a1SMatthew G. Knepley 
94842fe279fdSBarry Smith   Output Parameter:
9485bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9486b5a892a1SMatthew G. Knepley 
9487b5a892a1SMatthew G. Knepley   Level: advanced
9488b5a892a1SMatthew G. Knepley 
9489bb7acecfSBarry Smith   Note:
9490bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9491bb7acecfSBarry Smith 
949273ff1848SBarry Smith   Developer Note:
9493bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9494bb7acecfSBarry Smith 
94951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9496b5a892a1SMatthew G. Knepley @*/
9497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9498d71ae5a4SJacob Faibussowitsch {
9499b5a892a1SMatthew G. Knepley   PetscBool found;
9500b5a892a1SMatthew G. Knepley 
9501b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
95029566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
95037a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
95043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9505b5a892a1SMatthew G. Knepley }
9506012bc364SMatthew G. Knepley 
9507cc4c1da9SBarry Smith /*@
9508012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9509012bc364SMatthew G. Knepley 
951020f4b53cSBarry Smith   Not Collective
9511012bc364SMatthew G. Knepley 
9512012bc364SMatthew G. Knepley   Input Parameters:
9513bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9514012bc364SMatthew G. Knepley - point - Coordinates of the point
9515012bc364SMatthew G. Knepley 
95162fe279fdSBarry Smith   Output Parameter:
9517012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9518012bc364SMatthew G. Knepley 
9519012bc364SMatthew G. Knepley   Level: advanced
9520012bc364SMatthew G. Knepley 
95211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9522012bc364SMatthew G. Knepley @*/
9523d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9524d71ae5a4SJacob Faibussowitsch {
9525012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9526012bc364SMatthew G. Knepley   PetscInt  d;
9527012bc364SMatthew G. Knepley 
9528012bc364SMatthew G. Knepley   PetscFunctionBegin;
9529012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9530012bc364SMatthew G. Knepley   switch (ct) {
9531012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9532012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9533012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
95349371c9d4SSatish Balay       if (point[d] < -1.0) {
95359371c9d4SSatish Balay         *inside = PETSC_FALSE;
95369371c9d4SSatish Balay         break;
95379371c9d4SSatish Balay       }
9538012bc364SMatthew G. Knepley       sum += point[d];
9539012bc364SMatthew G. Knepley     }
95409371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
95419371c9d4SSatish Balay       *inside = PETSC_FALSE;
95429371c9d4SSatish Balay       break;
95439371c9d4SSatish Balay     }
9544012bc364SMatthew G. Knepley     break;
9545012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9546012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9547012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
95489371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
95499371c9d4SSatish Balay         *inside = PETSC_FALSE;
9550012bc364SMatthew G. Knepley         break;
95519371c9d4SSatish Balay       }
95529371c9d4SSatish Balay     break;
9553d71ae5a4SJacob Faibussowitsch   default:
9554d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9555012bc364SMatthew G. Knepley   }
95563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9557012bc364SMatthew G. Knepley }
9558adc21957SMatthew G. Knepley 
9559adc21957SMatthew G. Knepley /*@
9560adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9561adc21957SMatthew G. Knepley 
9562adc21957SMatthew G. Knepley   Logically collective
9563adc21957SMatthew G. Knepley 
9564adc21957SMatthew G. Knepley   Input Parameters:
9565adc21957SMatthew G. Knepley + dm      - The DM
9566adc21957SMatthew G. Knepley - reorder - Flag for reordering
9567adc21957SMatthew G. Knepley 
9568adc21957SMatthew G. Knepley   Level: intermediate
9569adc21957SMatthew G. Knepley 
9570adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9571adc21957SMatthew G. Knepley @*/
9572adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9573adc21957SMatthew G. Knepley {
9574adc21957SMatthew G. Knepley   PetscFunctionBegin;
9575adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9576adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9577adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9578adc21957SMatthew G. Knepley }
9579adc21957SMatthew G. Knepley 
9580adc21957SMatthew G. Knepley /*@
9581adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9582adc21957SMatthew G. Knepley 
9583adc21957SMatthew G. Knepley   Not collective
9584adc21957SMatthew G. Knepley 
9585adc21957SMatthew G. Knepley   Input Parameter:
9586adc21957SMatthew G. Knepley . dm - The DM
9587adc21957SMatthew G. Knepley 
9588adc21957SMatthew G. Knepley   Output Parameter:
9589adc21957SMatthew G. Knepley . reorder - Flag for reordering
9590adc21957SMatthew G. Knepley 
9591adc21957SMatthew G. Knepley   Level: intermediate
9592adc21957SMatthew G. Knepley 
9593adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9594adc21957SMatthew G. Knepley @*/
9595adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9596adc21957SMatthew G. Knepley {
9597adc21957SMatthew G. Knepley   PetscFunctionBegin;
9598adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9599adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9600adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9601adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9602adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9603adc21957SMatthew G. Knepley }
9604adc21957SMatthew G. Knepley 
9605cc4c1da9SBarry Smith /*@
9606adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9607adc21957SMatthew G. Knepley 
9608adc21957SMatthew G. Knepley   Logically collective
9609adc21957SMatthew G. Knepley 
9610adc21957SMatthew G. Knepley   Input Parameters:
9611adc21957SMatthew G. Knepley + dm      - The DM
9612adc21957SMatthew G. Knepley - reorder - The reordering method
9613adc21957SMatthew G. Knepley 
9614adc21957SMatthew G. Knepley   Level: intermediate
9615adc21957SMatthew G. Knepley 
9616adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9617adc21957SMatthew G. Knepley @*/
9618adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9619adc21957SMatthew G. Knepley {
9620adc21957SMatthew G. Knepley   PetscFunctionBegin;
9621adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9622adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9623adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9624adc21957SMatthew G. Knepley }
9625adc21957SMatthew G. Knepley 
9626cc4c1da9SBarry Smith /*@
9627adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9628adc21957SMatthew G. Knepley 
9629adc21957SMatthew G. Knepley   Not collective
9630adc21957SMatthew G. Knepley 
9631adc21957SMatthew G. Knepley   Input Parameter:
9632adc21957SMatthew G. Knepley . dm - The DM
9633adc21957SMatthew G. Knepley 
9634adc21957SMatthew G. Knepley   Output Parameter:
9635adc21957SMatthew G. Knepley . reorder - The reordering method
9636adc21957SMatthew G. Knepley 
9637adc21957SMatthew G. Knepley   Level: intermediate
9638adc21957SMatthew G. Knepley 
9639adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9640adc21957SMatthew G. Knepley @*/
9641adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9642adc21957SMatthew G. Knepley {
9643adc21957SMatthew G. Knepley   PetscFunctionBegin;
9644adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9645adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9646adc21957SMatthew G. Knepley   *reorder = NULL;
9647adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9648adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9649adc21957SMatthew G. Knepley }
9650