xref: /petsc/src/dm/interface/dm.c (revision 442f3b32a3c744619d58d01ca879039db38db8f2)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6f19dbd58SToby Isaac #include <petscdmfield.h>
70c312b8eSJed Brown #include <petscsf.h>
82764a2aaSMatthew G. Knepley #include <petscds.h>
947c6ae99SBarry Smith 
10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
11f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
12f918ec44SMatthew G. Knepley #endif
13f918ec44SMatthew G. Knepley 
14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS)
15cea3dcb8SSatish Balay   #include <petsc/private/valgrind/memcheck.h>
1600d952a4SJed Brown #endif
1700d952a4SJed Brown 
18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
20708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction;
2167a56275SMatthew G Knepley 
22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL};
240e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
259371c9d4SSatish Balay const char *const DMPolytopeTypes[]   = {"vertex",  "segment",       "tensor_segment",      "triangle", "quadrilateral", "tensor_quad",    "tetrahedron",  "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism",
269371c9d4SSatish Balay                                          "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown",  "invalid",       "DMPolytopeType", "DM_POLYTOPE_", NULL};
272cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2860c22052SBarry Smith 
29a4121054SBarry Smith /*@
30bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
31bb7acecfSBarry Smith   algebraic solvers, time integrators, and optimization algorithms.
32a4121054SBarry Smith 
33d083f849SBarry Smith   Collective
34a4121054SBarry Smith 
35a4121054SBarry Smith   Input Parameter:
36bb7acecfSBarry Smith . comm - The communicator for the `DM` object
37a4121054SBarry Smith 
38a4121054SBarry Smith   Output Parameter:
39bb7acecfSBarry Smith . dm - The `DM` object
40a4121054SBarry Smith 
41a4121054SBarry Smith   Level: beginner
42a4121054SBarry Smith 
43bb7acecfSBarry Smith   Notes:
44bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
45bb7acecfSBarry Smith 
46bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
47bb7acecfSBarry Smith   error when you try to use the dm.
48bb7acecfSBarry Smith 
491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
50a4121054SBarry Smith @*/
51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
52d71ae5a4SJacob Faibussowitsch {
53a4121054SBarry Smith   DM      v;
54e5e52638SMatthew G. Knepley   PetscDS ds;
55a4121054SBarry Smith 
56a4121054SBarry Smith   PetscFunctionBegin;
571411c6eeSJed Brown   PetscValidPointer(dm, 2);
580298fd71SBarry Smith   *dm = NULL;
599566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
60a4121054SBarry Smith 
619566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
62e7c4fc90SDmitry Karpeev 
6362e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6462e5d2d2SJDBetteridge 
6549be4549SMatthew G. Knepley   v->setupcalled          = PETSC_FALSE;
6649be4549SMatthew G. Knepley   v->setfromoptionscalled = PETSC_FALSE;
670298fd71SBarry Smith   v->ltogmap              = NULL;
68a4ea9b21SRichard Tran Mills   v->bind_below           = 0;
691411c6eeSJed Brown   v->bs                   = 1;
70171400e9SBarry Smith   v->coloringtype         = IS_COLORING_GLOBAL;
719566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
729566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
73c58f1c22SToby Isaac   v->labels                    = NULL;
7434aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7534aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
76c58f1c22SToby Isaac   v->depthLabel                = NULL;
77ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
781bb6d2a8SBarry Smith   v->localSection              = NULL;
791bb6d2a8SBarry Smith   v->globalSection             = NULL;
803b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
813b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
8279769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
836858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
846858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
856858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8696173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
87435a35e8SMatthew G Knepley   {
88435a35e8SMatthew G Knepley     PetscInt i;
89435a35e8SMatthew G Knepley     for (i = 0; i < 10; ++i) {
900298fd71SBarry Smith       v->nullspaceConstructors[i]     = NULL;
91f9d4088aSMatthew G. Knepley       v->nearnullspaceConstructors[i] = NULL;
92435a35e8SMatthew G Knepley     }
93435a35e8SMatthew G Knepley   }
949566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
9507218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
969566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
979566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
9814f150ffSMatthew G. Knepley   v->dmBC              = NULL;
99a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
100f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
101cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
1029566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
1039566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
1044a7a4c06SLawrence Mitchell 
1051411c6eeSJed Brown   *dm = v;
1063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
107a4121054SBarry Smith }
108a4121054SBarry Smith 
10938221697SMatthew G. Knepley /*@
110bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
11138221697SMatthew G. Knepley 
112d083f849SBarry Smith   Collective
11338221697SMatthew G. Knepley 
11438221697SMatthew G. Knepley   Input Parameter:
115bb7acecfSBarry Smith . dm - The original `DM` object
11638221697SMatthew G. Knepley 
11738221697SMatthew G. Knepley   Output Parameter:
118bb7acecfSBarry Smith . newdm  - The new `DM` object
11938221697SMatthew G. Knepley 
12038221697SMatthew G. Knepley   Level: beginner
12138221697SMatthew G. Knepley 
1221cb8cacdSPatrick Sanan   Notes:
123bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
124bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
125bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1261bb6d2a8SBarry Smith 
127bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
12889706ed2SPatrick Sanan 
129bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
130bb7acecfSBarry Smith 
1311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMSetType()`, `DMConvert()`
13238221697SMatthew G. Knepley @*/
133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
134d71ae5a4SJacob Faibussowitsch {
13538221697SMatthew G. Knepley   PetscSF  sf;
13638221697SMatthew G. Knepley   Vec      coords;
13738221697SMatthew G. Knepley   void    *ctx;
1386858538eSMatthew G. Knepley   PetscInt dim, cdim, i;
13938221697SMatthew G. Knepley 
14038221697SMatthew G. Knepley   PetscFunctionBegin;
14138221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14238221697SMatthew G. Knepley   PetscValidPointer(newdm, 2);
1439566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1449566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
145ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
146ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
147c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
1489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1499566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1519566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1539566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
154dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1553f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1569566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1579566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1589566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1599566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
1606858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1616858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
162be4c1c3eSMatthew G. Knepley       DM           ncdm;
163be4c1c3eSMatthew G. Knepley       PetscSection cs;
1645a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
165be4c1c3eSMatthew G. Knepley 
1666858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1679566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
168712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1695a0206caSToby Isaac       if (pEndMax >= 0) {
1706858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1716858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1729566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1736858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1746858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1759566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
176be4c1c3eSMatthew G. Knepley       }
177be4c1c3eSMatthew G. Knepley     }
1786858538eSMatthew G. Knepley   }
1799566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1809566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
18238221697SMatthew G. Knepley   if (coords) {
1839566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
18438221697SMatthew G. Knepley   } else {
1859566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1869566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
18738221697SMatthew G. Knepley   }
1886858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1896858538eSMatthew G. Knepley   if (coords) {
1906858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1916858538eSMatthew G. Knepley   } else {
1926858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
1936858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
1946858538eSMatthew G. Knepley   }
19590b157c4SStefano Zampini   {
1964fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
1976858538eSMatthew G. Knepley 
1984fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
1994fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
200c6b900c6SMatthew G. Knepley   }
20134aa8a36SMatthew G. Knepley   {
20234aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
20334aa8a36SMatthew G. Knepley 
2049566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2059566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
20634aa8a36SMatthew G. Knepley   }
2073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20838221697SMatthew G. Knepley }
20938221697SMatthew G. Knepley 
2109a42bb27SBarry Smith /*@C
211bb7acecfSBarry Smith        DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2129a42bb27SBarry Smith 
21320f4b53cSBarry Smith    Logically Collective
2149a42bb27SBarry Smith 
215147403d9SBarry Smith    Input Parameters:
2169a42bb27SBarry Smith +  da - initial distributed array
217bb7acecfSBarry Smith -  ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2189a42bb27SBarry Smith 
21920f4b53cSBarry Smith    Options Database Key:
220147403d9SBarry Smith .   -dm_vec_type ctype - the type of vector to create
2219a42bb27SBarry Smith 
2229a42bb27SBarry Smith    Level: intermediate
2239a42bb27SBarry Smith 
2241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
225bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2269a42bb27SBarry Smith @*/
227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVecType(DM da, VecType ctype)
228d71ae5a4SJacob Faibussowitsch {
2299a42bb27SBarry Smith   PetscFunctionBegin;
2309a42bb27SBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
2319566063dSJacob Faibussowitsch   PetscCall(PetscFree(da->vectype));
2329566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&da->vectype));
2333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2349a42bb27SBarry Smith }
2359a42bb27SBarry Smith 
236c0dedaeaSBarry Smith /*@C
237bb7acecfSBarry Smith        DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
238c0dedaeaSBarry Smith 
23920f4b53cSBarry Smith    Logically Collective
240c0dedaeaSBarry Smith 
241c0dedaeaSBarry Smith    Input Parameter:
242c0dedaeaSBarry Smith .  da - initial distributed array
243c0dedaeaSBarry Smith 
244c0dedaeaSBarry Smith    Output Parameter:
245c0dedaeaSBarry Smith .  ctype - the vector type
246c0dedaeaSBarry Smith 
247c0dedaeaSBarry Smith    Level: intermediate
248c0dedaeaSBarry Smith 
2491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
250c0dedaeaSBarry Smith @*/
251d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
252d71ae5a4SJacob Faibussowitsch {
253c0dedaeaSBarry Smith   PetscFunctionBegin;
254c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
255c0dedaeaSBarry Smith   *ctype = da->vectype;
2563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
257c0dedaeaSBarry Smith }
258c0dedaeaSBarry Smith 
2595f1ad066SMatthew G Knepley /*@
260bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2615f1ad066SMatthew G Knepley 
26220f4b53cSBarry Smith   Not Collective
2635f1ad066SMatthew G Knepley 
2645f1ad066SMatthew G Knepley   Input Parameter:
265bb7acecfSBarry Smith . v - The `Vec`
2665f1ad066SMatthew G Knepley 
2675f1ad066SMatthew G Knepley   Output Parameter:
268bb7acecfSBarry Smith . dm - The `DM`
2695f1ad066SMatthew G Knepley 
2705f1ad066SMatthew G Knepley   Level: intermediate
2715f1ad066SMatthew G Knepley 
272bb7acecfSBarry Smith   Note:
273bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
274bb7acecfSBarry Smith 
2751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2765f1ad066SMatthew G Knepley @*/
277d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
278d71ae5a4SJacob Faibussowitsch {
2795f1ad066SMatthew G Knepley   PetscFunctionBegin;
2805f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2815f1ad066SMatthew G Knepley   PetscValidPointer(dm, 2);
2829566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2845f1ad066SMatthew G Knepley }
2855f1ad066SMatthew G Knepley 
2865f1ad066SMatthew G Knepley /*@
287bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
2885f1ad066SMatthew G Knepley 
28920f4b53cSBarry Smith   Not Collective
2905f1ad066SMatthew G Knepley 
2915f1ad066SMatthew G Knepley   Input Parameters:
292bb7acecfSBarry Smith + v - The `Vec`
293bb7acecfSBarry Smith - dm - The `DM`
2945f1ad066SMatthew G Knepley 
29520f4b53cSBarry Smith   Level: developer
29620f4b53cSBarry Smith 
297bb7acecfSBarry Smith   Note:
298bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
299d9805387SMatthew G. Knepley 
300bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
301bb7acecfSBarry Smith 
3021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3035f1ad066SMatthew G Knepley @*/
304d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
305d71ae5a4SJacob Faibussowitsch {
3065f1ad066SMatthew G Knepley   PetscFunctionBegin;
3075f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
308d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3099566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3115f1ad066SMatthew G Knepley }
3125f1ad066SMatthew G Knepley 
313521d9a4cSLisandro Dalcin /*@C
314bb7acecfSBarry Smith        DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3158f1509bcSBarry Smith 
31620f4b53cSBarry Smith    Logically Collective
3178f1509bcSBarry Smith 
3188f1509bcSBarry Smith    Input Parameters:
319bb7acecfSBarry Smith +  dm - the `DM` context
3208f1509bcSBarry Smith -  ctype - the matrix type
3218f1509bcSBarry Smith 
32220f4b53cSBarry Smith    Options Database Key:
3238f1509bcSBarry Smith .   -dm_is_coloring_type - global or local
3248f1509bcSBarry Smith 
3258f1509bcSBarry Smith    Level: intermediate
3268f1509bcSBarry Smith 
3271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
328bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3298f1509bcSBarry Smith @*/
330d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
331d71ae5a4SJacob Faibussowitsch {
3328f1509bcSBarry Smith   PetscFunctionBegin;
3338f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3348f1509bcSBarry Smith   dm->coloringtype = ctype;
3353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3368f1509bcSBarry Smith }
3378f1509bcSBarry Smith 
3388f1509bcSBarry Smith /*@C
339bb7acecfSBarry Smith        DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
340521d9a4cSLisandro Dalcin 
34120f4b53cSBarry Smith    Logically Collective
342521d9a4cSLisandro Dalcin 
343521d9a4cSLisandro Dalcin    Input Parameter:
344bb7acecfSBarry Smith .  dm - the `DM` context
3458f1509bcSBarry Smith 
3468f1509bcSBarry Smith    Output Parameter:
3478f1509bcSBarry Smith .  ctype - the matrix type
3488f1509bcSBarry Smith 
34920f4b53cSBarry Smith    Options Database Key:
3508f1509bcSBarry Smith .   -dm_is_coloring_type - global or local
3518f1509bcSBarry Smith 
3528f1509bcSBarry Smith    Level: intermediate
3538f1509bcSBarry Smith 
3541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
355bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3568f1509bcSBarry Smith @*/
357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
358d71ae5a4SJacob Faibussowitsch {
3598f1509bcSBarry Smith   PetscFunctionBegin;
3608f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3618f1509bcSBarry Smith   *ctype = dm->coloringtype;
3623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3638f1509bcSBarry Smith }
3648f1509bcSBarry Smith 
3658f1509bcSBarry Smith /*@C
366bb7acecfSBarry Smith        DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3678f1509bcSBarry Smith 
36820f4b53cSBarry Smith    Logically Collective
3698f1509bcSBarry Smith 
3708f1509bcSBarry Smith    Input Parameters:
371bb7acecfSBarry Smith +  dm - the `DM` context
372bb7acecfSBarry Smith -  ctype - the matrix type, for example `MATMPIAIJ`
373521d9a4cSLisandro Dalcin 
37420f4b53cSBarry Smith    Options Database Key:
375bb7acecfSBarry Smith .   -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
376521d9a4cSLisandro Dalcin 
377521d9a4cSLisandro Dalcin    Level: intermediate
378521d9a4cSLisandro Dalcin 
3791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
380521d9a4cSLisandro Dalcin @*/
381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
382d71ae5a4SJacob Faibussowitsch {
383521d9a4cSLisandro Dalcin   PetscFunctionBegin;
384521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3859566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->mattype));
3869566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
3873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
388521d9a4cSLisandro Dalcin }
389521d9a4cSLisandro Dalcin 
390c0dedaeaSBarry Smith /*@C
39120f4b53cSBarry Smith        DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
392c0dedaeaSBarry Smith 
39320f4b53cSBarry Smith    Logically Collective
394c0dedaeaSBarry Smith 
395c0dedaeaSBarry Smith    Input Parameter:
396bb7acecfSBarry Smith .  dm - the `DM` context
397c0dedaeaSBarry Smith 
398c0dedaeaSBarry Smith    Output Parameter:
399c0dedaeaSBarry Smith .  ctype - the matrix type
400c0dedaeaSBarry Smith 
401c0dedaeaSBarry Smith    Level: intermediate
402c0dedaeaSBarry Smith 
4031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()`
404c0dedaeaSBarry Smith @*/
405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
406d71ae5a4SJacob Faibussowitsch {
407c0dedaeaSBarry Smith   PetscFunctionBegin;
408c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
409c0dedaeaSBarry Smith   *ctype = dm->mattype;
4103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
411c0dedaeaSBarry Smith }
412c0dedaeaSBarry Smith 
413c688c046SMatthew G Knepley /*@
414bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
415c688c046SMatthew G Knepley 
41620f4b53cSBarry Smith   Not Collective
417c688c046SMatthew G Knepley 
418c688c046SMatthew G Knepley   Input Parameter:
419bb7acecfSBarry Smith . A - The `Mat`
420c688c046SMatthew G Knepley 
421c688c046SMatthew G Knepley   Output Parameter:
422bb7acecfSBarry Smith . dm - The `DM`
423c688c046SMatthew G Knepley 
424c688c046SMatthew G Knepley   Level: intermediate
425c688c046SMatthew G Knepley 
426bb7acecfSBarry Smith   Note:
427bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
428bb7acecfSBarry Smith 
429bb7acecfSBarry Smith   Developer Note:
430bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4318f1509bcSBarry Smith 
4321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
433c688c046SMatthew G Knepley @*/
434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
435d71ae5a4SJacob Faibussowitsch {
436c688c046SMatthew G Knepley   PetscFunctionBegin;
437c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
438c688c046SMatthew G Knepley   PetscValidPointer(dm, 2);
4399566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
441c688c046SMatthew G Knepley }
442c688c046SMatthew G Knepley 
443c688c046SMatthew G Knepley /*@
444bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
445c688c046SMatthew G Knepley 
44620f4b53cSBarry Smith   Not Collective
447c688c046SMatthew G Knepley 
448c688c046SMatthew G Knepley   Input Parameters:
44920f4b53cSBarry Smith + A - The `Mat`
45020f4b53cSBarry Smith - dm - The `DM`
451c688c046SMatthew G Knepley 
452bb7acecfSBarry Smith   Level: developer
453c688c046SMatthew G Knepley 
454bb7acecfSBarry Smith   Note:
455bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
456bb7acecfSBarry Smith 
457bb7acecfSBarry Smith   Developer Note:
458bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
459bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4608f1509bcSBarry Smith 
4611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
462c688c046SMatthew G Knepley @*/
463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
464d71ae5a4SJacob Faibussowitsch {
465c688c046SMatthew G Knepley   PetscFunctionBegin;
466c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4678865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4689566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
470c688c046SMatthew G Knepley }
471c688c046SMatthew G Knepley 
4729a42bb27SBarry Smith /*@C
473bb7acecfSBarry Smith    DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4749a42bb27SBarry Smith 
47520f4b53cSBarry Smith    Logically Collective
4769a42bb27SBarry Smith 
477d8d19677SJose E. Roman    Input Parameters:
478bb7acecfSBarry Smith +  da - the `DM` context
479bb7acecfSBarry Smith -  prefix - the prefix to prepend
4809a42bb27SBarry Smith 
48120f4b53cSBarry Smith    Level: advanced
48220f4b53cSBarry Smith 
48320f4b53cSBarry Smith    Note:
4849a42bb27SBarry Smith    A hyphen (-) must NOT be given at the beginning of the prefix name.
4859a42bb27SBarry Smith    The first character of all runtime options is AUTOMATICALLY the hyphen.
4869a42bb27SBarry Smith 
4871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
4889a42bb27SBarry Smith @*/
489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
490d71ae5a4SJacob Faibussowitsch {
4919a42bb27SBarry Smith   PetscFunctionBegin;
4929a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4939566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
4941baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
4951baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
4963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4979a42bb27SBarry Smith }
4989a42bb27SBarry Smith 
49931697293SDave May /*@C
500da81f932SPierre Jolivet    DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
501bb7acecfSBarry Smith    `DM` options in the options database.
50231697293SDave May 
50320f4b53cSBarry Smith    Logically Collective
50431697293SDave May 
50531697293SDave May    Input Parameters:
506bb7acecfSBarry Smith +  dm - the `DM` context
507bb7acecfSBarry Smith -  prefix - the string to append to the current prefix
50831697293SDave May 
50920f4b53cSBarry Smith    Level: advanced
51020f4b53cSBarry Smith 
51120f4b53cSBarry Smith    Note:
512bb7acecfSBarry Smith    If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
51331697293SDave May    A hyphen (-) must NOT be given at the beginning of the prefix name.
51431697293SDave May    The first character of all runtime options is AUTOMATICALLY the hyphen.
51531697293SDave May 
5161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
51731697293SDave May @*/
518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
519d71ae5a4SJacob Faibussowitsch {
52031697293SDave May   PetscFunctionBegin;
52131697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5229566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
52431697293SDave May }
52531697293SDave May 
52631697293SDave May /*@C
52731697293SDave May    DMGetOptionsPrefix - Gets the prefix used for searching for all
528bb7acecfSBarry Smith    DM options in the options database.
52931697293SDave May 
53031697293SDave May    Not Collective
53131697293SDave May 
5322fe279fdSBarry Smith    Input Parameter:
533bb7acecfSBarry Smith .  dm - the `DM` context
53431697293SDave May 
5352fe279fdSBarry Smith    Output Parameter:
53631697293SDave May .  prefix - pointer to the prefix string used is returned
53731697293SDave May 
53831697293SDave May    Level: advanced
53931697293SDave May 
54020f4b53cSBarry Smith    Fortran Note:
54120f4b53cSBarry Smith    Pass in a string 'prefix' of
54220f4b53cSBarry Smith    sufficient length to hold the prefix.
54320f4b53cSBarry Smith 
5441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
54531697293SDave May @*/
546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
547d71ae5a4SJacob Faibussowitsch {
54831697293SDave May   PetscFunctionBegin;
54931697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5509566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55231697293SDave May }
55331697293SDave May 
55462e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
555d71ae5a4SJacob Faibussowitsch {
5566eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
55788bdff64SToby Isaac 
55888bdff64SToby Isaac   PetscFunctionBegin;
559aab5bcd8SJed Brown   *ncrefct = 0;
56088bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
56188bdff64SToby Isaac     refct--;
56288bdff64SToby Isaac     if (recurseCoarse) {
56388bdff64SToby Isaac       PetscInt coarseCount;
56488bdff64SToby Isaac 
56562e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
56688bdff64SToby Isaac       refct += coarseCount;
56788bdff64SToby Isaac     }
56888bdff64SToby Isaac   }
56988bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
57088bdff64SToby Isaac     refct--;
57188bdff64SToby Isaac     if (recurseFine) {
57288bdff64SToby Isaac       PetscInt fineCount;
57388bdff64SToby Isaac 
57462e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
57588bdff64SToby Isaac       refct += fineCount;
57688bdff64SToby Isaac     }
57788bdff64SToby Isaac   }
57888bdff64SToby Isaac   *ncrefct = refct;
5793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58088bdff64SToby Isaac }
58188bdff64SToby Isaac 
58262e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
58362e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
58462e5d2d2SJDBetteridge {
58562e5d2d2SJDBetteridge   PetscFunctionBegin;
58662e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
5873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58862e5d2d2SJDBetteridge }
58962e5d2d2SJDBetteridge 
590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
591d71ae5a4SJacob Faibussowitsch {
5925d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
593354557abSToby Isaac 
594354557abSToby Isaac   PetscFunctionBegin;
595354557abSToby Isaac   /* destroy the labels */
596354557abSToby Isaac   while (next) {
597354557abSToby Isaac     DMLabelLink tmp = next->next;
598354557abSToby Isaac 
5995d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
600ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6019566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6029566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
603354557abSToby Isaac     next = tmp;
604354557abSToby Isaac   }
6055d80c0bfSVaclav Hapla   dm->labels = NULL;
6063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
607354557abSToby Isaac }
608354557abSToby Isaac 
609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
610d71ae5a4SJacob Faibussowitsch {
6116858538eSMatthew G. Knepley   PetscFunctionBegin;
6126858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6136858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6146858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6156858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6166858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6186858538eSMatthew G. Knepley }
6196858538eSMatthew G. Knepley 
6201fb7b255SJunchao Zhang /*@C
621bb7acecfSBarry Smith     DMDestroy - Destroys a `DM`.
62247c6ae99SBarry Smith 
62320f4b53cSBarry Smith     Collective
62447c6ae99SBarry Smith 
62547c6ae99SBarry Smith     Input Parameter:
626bb7acecfSBarry Smith .   dm - the `DM` object to destroy
62747c6ae99SBarry Smith 
62847c6ae99SBarry Smith     Level: developer
62947c6ae99SBarry Smith 
6301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
63147c6ae99SBarry Smith @*/
632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
633d71ae5a4SJacob Faibussowitsch {
6346eb26441SStefano Zampini   PetscInt       cnt;
635dfe15315SJed Brown   DMNamedVecLink nlink, nnext;
63647c6ae99SBarry Smith 
63747c6ae99SBarry Smith   PetscFunctionBegin;
6383ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
6396bf464f9SBarry Smith   PetscValidHeaderSpecific((*dm), DM_CLASSID, 1);
64087e657c6SBarry Smith 
64188bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
64262e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
64388bdff64SToby Isaac   --((PetscObject)(*dm))->refct;
6449371c9d4SSatish Balay   if (--cnt > 0) {
6459371c9d4SSatish Balay     *dm = NULL;
6463ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6479371c9d4SSatish Balay   }
6483ba16761SJacob Faibussowitsch   if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
6496bf464f9SBarry Smith   ((PetscObject)(*dm))->refct = 0;
6506eb26441SStefano Zampini 
6519566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6529566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
6536eb26441SStefano Zampini 
654f490541aSPeter Brune   nnext              = (*dm)->namedglobal;
6550298fd71SBarry Smith   (*dm)->namedglobal = NULL;
656f490541aSPeter Brune   for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named vectors */
6572348bcf4SPeter Brune     nnext = nlink->next;
6587a8be351SBarry Smith     PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name);
6599566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink->name));
6609566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&nlink->X));
6619566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink));
6622348bcf4SPeter Brune   }
663f490541aSPeter Brune   nnext             = (*dm)->namedlocal;
6640298fd71SBarry Smith   (*dm)->namedlocal = NULL;
665f490541aSPeter Brune   for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named local vectors */
666f490541aSPeter Brune     nnext = nlink->next;
6677a8be351SBarry Smith     PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name);
6689566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink->name));
6699566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&nlink->X));
6709566063dSJacob Faibussowitsch     PetscCall(PetscFree(nlink));
671f490541aSPeter Brune   }
6722348bcf4SPeter Brune 
673b17ce1afSJed Brown   /* Destroy the list of hooks */
674c833c3b5SJed Brown   {
675c833c3b5SJed Brown     DMCoarsenHookLink link, next;
676b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
677b17ce1afSJed Brown       next = link->next;
6789566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
679b17ce1afSJed Brown     }
6800298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
681c833c3b5SJed Brown   }
682c833c3b5SJed Brown   {
683c833c3b5SJed Brown     DMRefineHookLink link, next;
684c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
685c833c3b5SJed Brown       next = link->next;
6869566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
687c833c3b5SJed Brown     }
6880298fd71SBarry Smith     (*dm)->refinehook = NULL;
689c833c3b5SJed Brown   }
690be081cd6SPeter Brune   {
691be081cd6SPeter Brune     DMSubDomainHookLink link, next;
692be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
693be081cd6SPeter Brune       next = link->next;
6949566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
695be081cd6SPeter Brune     }
6960298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
697be081cd6SPeter Brune   }
698baf369e7SPeter Brune   {
699baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
700baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
701baf369e7SPeter Brune       next = link->next;
7029566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
703baf369e7SPeter Brune     }
7040298fd71SBarry Smith     (*dm)->gtolhook = NULL;
705baf369e7SPeter Brune   }
706d4d07f1eSToby Isaac   {
707d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
708d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
709d4d07f1eSToby Isaac       next = link->next;
7109566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
711d4d07f1eSToby Isaac     }
712d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
713d4d07f1eSToby Isaac   }
714aa1993deSMatthew G Knepley   /* Destroy the work arrays */
715aa1993deSMatthew G Knepley   {
716aa1993deSMatthew G Knepley     DMWorkLink link, next;
717*442f3b32SStefano Zampini     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (*dm)->workout, (*dm)->workout->mem);
718aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
719aa1993deSMatthew G Knepley       next = link->next;
7209566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7219566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
722aa1993deSMatthew G Knepley     }
7230298fd71SBarry Smith     (*dm)->workin = NULL;
724aa1993deSMatthew G Knepley   }
725c58f1c22SToby Isaac   /* destroy the labels */
7269566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
727f4cdcedcSVaclav Hapla   /* destroy the fields */
7289566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
729f4cdcedcSVaclav Hapla   /* destroy the boundaries */
730e6f8dbb6SToby Isaac   {
731e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
732e6f8dbb6SToby Isaac     while (next) {
733e6f8dbb6SToby Isaac       DMBoundary b = next;
734e6f8dbb6SToby Isaac 
735e6f8dbb6SToby Isaac       next = b->next;
7369566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
737e6f8dbb6SToby Isaac     }
738e6f8dbb6SToby Isaac   }
739b17ce1afSJed Brown 
7409566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7419566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7429566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
74352536dc3SBarry Smith 
74448a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7459566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7469566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7479566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7489566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
74988ed4aceSMatthew G Knepley 
7509566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7519566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
7529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7539566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7549566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7559566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
757736995cdSBlaise Bourdin   if ((*dm)->useNatural) {
75848a46eb9SPierre Jolivet     if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7599566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
760736995cdSBlaise Bourdin   }
7619a2a23afSMatthew G. Knepley   {
7629a2a23afSMatthew G. Knepley     Vec     *auxData;
7639a2a23afSMatthew G. Knepley     PetscInt n, i, off = 0;
7649a2a23afSMatthew G. Knepley 
7659566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n));
7669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n, &auxData));
7679566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData));
7689566063dSJacob Faibussowitsch     for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
7699566063dSJacob Faibussowitsch     PetscCall(PetscFree(auxData));
7709566063dSJacob Faibussowitsch     PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
7719a2a23afSMatthew G. Knepley   }
77248a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7736eb26441SStefano Zampini 
7749566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
77548a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7769566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7774fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7789566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7799566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
7806858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7816858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7829566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7839566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7849566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
7856725e60dSJed Brown   PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local));
7866725e60dSJed Brown   PetscCall(VecDestroy(&(*dm)->periodic.affine));
7876636e97aSMatthew G Knepley 
7889566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7899566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
790e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7919566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
792732e2eb9SMatthew G Knepley 
79348a46eb9SPierre Jolivet   if ((*dm)->ops->destroy) PetscCall((*(*dm)->ops->destroy)(*dm));
7949566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
795f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7969566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7979566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
798f918ec44SMatthew G. Knepley #endif
799435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
8009566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
8013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
80247c6ae99SBarry Smith }
80347c6ae99SBarry Smith 
804d7bf68aeSBarry Smith /*@
805bb7acecfSBarry Smith     DMSetUp - sets up the data structures inside a `DM` object
806d7bf68aeSBarry Smith 
80720f4b53cSBarry Smith     Collective
808d7bf68aeSBarry Smith 
809d7bf68aeSBarry Smith     Input Parameter:
810bb7acecfSBarry Smith .   dm - the `DM` object to setup
811d7bf68aeSBarry Smith 
812bb7acecfSBarry Smith     Level: intermediate
813d7bf68aeSBarry Smith 
814bb7acecfSBarry Smith     Note:
815bb7acecfSBarry Smith     This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
816bb7acecfSBarry Smith 
8171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
818d7bf68aeSBarry Smith @*/
819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
820d71ae5a4SJacob Faibussowitsch {
821d7bf68aeSBarry Smith   PetscFunctionBegin;
822171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8233ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
824dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8258387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
827d7bf68aeSBarry Smith }
828d7bf68aeSBarry Smith 
829d7bf68aeSBarry Smith /*@
830bb7acecfSBarry Smith     DMSetFromOptions - sets parameters in a `DM` from the options database
831d7bf68aeSBarry Smith 
83220f4b53cSBarry Smith     Collective
833d7bf68aeSBarry Smith 
834d7bf68aeSBarry Smith     Input Parameter:
835bb7acecfSBarry Smith .   dm - the `DM` object to set options for
836d7bf68aeSBarry Smith 
83720f4b53cSBarry Smith     Options Database Keys:
838bb7acecfSBarry Smith +   -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
839bb7acecfSBarry Smith .   -dm_vec_type <type>  - type of vector to create inside `DM`
840bb7acecfSBarry Smith .   -dm_mat_type <type>  - type of matrix to create inside `DM`
841a4ea9b21SRichard Tran Mills .   -dm_is_coloring_type - <global or local>
84220f4b53cSBarry Smith .   -dm_bind_below <n>   - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
84320f4b53cSBarry Smith . -dm_plex_filename <str>           - File containing a mesh
8449318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>  - File containing a mesh boundary
845cd7e8a5eSksagiyam . -dm_plex_name <str>               - Name of the mesh in the file
8465dca41c3SJed Brown . -dm_plex_shape <shape>            - The domain shape, such as `BOX`, `SPHERE`, etc.
8479318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                - Cell shape
8489318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain
8499318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                - Set the topological dimension
850bb7acecfSBarry Smith . -dm_plex_simplex <bool>           - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
851bb7acecfSBarry Smith . -dm_plex_interpolate <bool>       - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
8529318fe57SMatthew G. Knepley . -dm_plex_scale <sc>               - Scale factor for mesh coordinates
8539318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>        - Number of faces along each dimension
8549318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>        - Specify lower-left-bottom coordinates for the box
8559318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>        - Specify upper-right-top coordinates for the box
856bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>        - Specify the `DMBoundaryType` for each direction
8579318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>        - The sphere radius
8589318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>          - Radius of the ball
8599318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>         - Boundary type in the z direction
8609318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>  - Number of wedges around the cylinder
861bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>          - Reorder the mesh using the specified algorithm
8629318fe57SMatthew G. Knepley . -dm_refine_pre <n>                - The number of refinements before distribution
8639318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>     - Flag for uniform refinement before distribution
8649318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>   - The maximum cell volume after refinement before distribution
8659318fe57SMatthew G. Knepley . -dm_refine <n>                    - The number of refinements after distribution
866bdf63967SMatthew G. Knepley . -dm_extrude <l>                   - Activate extrusion and specify the number of layers to extrude
867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
872909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells    - Flag to create finite volume ghost cells on the boundary
873909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary
8749318fe57SMatthew G. Knepley . -dm_distribute <bool>             - Flag to redistribute a mesh among processes
8759318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>        - The size of the overlap halo
8769318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>          - Set adjacency direction
87720f4b53cSBarry Smith .  -dm_plex_adj_closure <bool>       - Set adjacency size
87820f4b53cSBarry Smith .   -dm_plex_check_symmetry        - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
879bb7acecfSBarry Smith .   -dm_plex_check_skeleton        - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
880bb7acecfSBarry Smith .   -dm_plex_check_faces           - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
881bb7acecfSBarry Smith .   -dm_plex_check_geometry        - Check that cells have positive volume - `DMPlexCheckGeometry()`
882bb7acecfSBarry Smith .   -dm_plex_check_pointsf         - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
883bb7acecfSBarry Smith .   -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
884384a6580SVaclav Hapla -   -dm_plex_check_all             - Perform all the checks above
885d7bf68aeSBarry Smith 
88695eb5ee5SVaclav Hapla     Level: intermediate
88795eb5ee5SVaclav Hapla 
8881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
889bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
890bb7acecfSBarry Smith          `DMSetOptionsPrefix()`, `DM`, `DMType`, `DMPLEX`, `DMDA`
891d7bf68aeSBarry Smith @*/
892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
893d71ae5a4SJacob Faibussowitsch {
8947781c08eSBarry Smith   char      typeName[256];
895ca266f36SBarry Smith   PetscBool flg;
896d7bf68aeSBarry Smith 
897d7bf68aeSBarry Smith   PetscFunctionBegin;
898171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89949be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
9009566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
9019566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
902dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
903d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
9049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
9059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9061baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9079566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9081baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
909863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9119566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
912dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
913f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
914dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
915d0609cedSBarry Smith   PetscOptionsEnd();
9163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
917d7bf68aeSBarry Smith }
918d7bf68aeSBarry Smith 
919fc9bc008SSatish Balay /*@C
920bb7acecfSBarry Smith    DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
921fe2efc57SMark 
92220f4b53cSBarry Smith    Collective
923fe2efc57SMark 
924fe2efc57SMark    Input Parameters:
925bb7acecfSBarry Smith +  dm - the `DM` object
92620f4b53cSBarry Smith .  obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used)
927bb7acecfSBarry Smith -  optionname - option string that is used to activate viewing
928fe2efc57SMark 
929fe2efc57SMark    Level: intermediate
930bb7acecfSBarry Smith 
931bb7acecfSBarry Smith    Note:
932bb7acecfSBarry Smith    See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
933bb7acecfSBarry Smith 
9341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`, `PetscObjectViewFromOptions()`
935fe2efc57SMark @*/
936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[])
937d71ae5a4SJacob Faibussowitsch {
938fe2efc57SMark   PetscFunctionBegin;
939fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9409566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
942fe2efc57SMark }
943fe2efc57SMark 
944fe2efc57SMark /*@C
945bb7acecfSBarry Smith     DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
946bb7acecfSBarry Smith     save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
94747c6ae99SBarry Smith 
94820f4b53cSBarry Smith     Collective
94947c6ae99SBarry Smith 
950d8d19677SJose E. Roman     Input Parameters:
951bb7acecfSBarry Smith +   dm - the `DM` object to view
95247c6ae99SBarry Smith -   v - the viewer
95347c6ae99SBarry Smith 
95420f4b53cSBarry Smith     Level: beginner
95520f4b53cSBarry Smith 
956cd7e8a5eSksagiyam     Notes:
957bb7acecfSBarry Smith     Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX`
958bb7acecfSBarry Smith     meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
959bb7acecfSBarry Smith     before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
960cd7e8a5eSksagiyam 
9611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
96247c6ae99SBarry Smith @*/
963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
964d71ae5a4SJacob Faibussowitsch {
96532c0f0efSBarry Smith   PetscBool         isbinary;
96676a8abe0SBarry Smith   PetscMPIInt       size;
96776a8abe0SBarry Smith   PetscViewerFormat format;
96847c6ae99SBarry Smith 
96947c6ae99SBarry Smith   PetscFunctionBegin;
970171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
97148a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
972b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
97374903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
97474903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
97574903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
97674903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
97774903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
97874903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
97974903a4fSStefano Zampini      in an error here */
98074903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9819566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
982b1b135c8SBarry Smith 
9839566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
9849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
9853ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
9869566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
9879566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
98832c0f0efSBarry Smith   if (isbinary) {
98955849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
99032c0f0efSBarry Smith     char     type[256];
99132c0f0efSBarry Smith 
9929566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
993c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
9949566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
99532c0f0efSBarry Smith   }
996dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
9973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
99847c6ae99SBarry Smith }
99947c6ae99SBarry Smith 
100047c6ae99SBarry Smith /*@
1001bb7acecfSBarry Smith     DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1002bb7acecfSBarry Smith     that is it has no ghost locations.
100347c6ae99SBarry Smith 
100420f4b53cSBarry Smith     Collective
100547c6ae99SBarry Smith 
100647c6ae99SBarry Smith     Input Parameter:
1007bb7acecfSBarry Smith .   dm - the `DM` object
100847c6ae99SBarry Smith 
100947c6ae99SBarry Smith     Output Parameter:
101047c6ae99SBarry Smith .   vec - the global vector
101147c6ae99SBarry Smith 
1012073dac72SJed Brown     Level: beginner
101347c6ae99SBarry Smith 
10141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1015bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
101647c6ae99SBarry Smith @*/
1017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1018d71ae5a4SJacob Faibussowitsch {
101947c6ae99SBarry Smith   PetscFunctionBegin;
1020171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1021b9d85ea2SLisandro Dalcin   PetscValidPointer(vec, 2);
1022dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
102376bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1024c6b011d8SStefano Zampini     DM vdm;
1025c6b011d8SStefano Zampini 
10269566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10277a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1028c6b011d8SStefano Zampini   }
10293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
103047c6ae99SBarry Smith }
103147c6ae99SBarry Smith 
103247c6ae99SBarry Smith /*@
1033bb7acecfSBarry Smith     DMCreateLocalVector - Creates a local vector from a `DM` object.
103447c6ae99SBarry Smith 
103547c6ae99SBarry Smith     Not Collective
103647c6ae99SBarry Smith 
103747c6ae99SBarry Smith     Input Parameter:
1038bb7acecfSBarry Smith .   dm - the `DM` object
103947c6ae99SBarry Smith 
104047c6ae99SBarry Smith     Output Parameter:
104147c6ae99SBarry Smith .   vec - the local vector
104247c6ae99SBarry Smith 
1043073dac72SJed Brown     Level: beginner
104447c6ae99SBarry Smith 
104520f4b53cSBarry Smith     Note:
1046bb7acecfSBarry Smith     A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1047bb7acecfSBarry Smith 
10481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1049bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
105047c6ae99SBarry Smith @*/
1051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1052d71ae5a4SJacob Faibussowitsch {
105347c6ae99SBarry Smith   PetscFunctionBegin;
1054171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1055b9d85ea2SLisandro Dalcin   PetscValidPointer(vec, 2);
1056dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
105776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1058c6b011d8SStefano Zampini     DM vdm;
1059c6b011d8SStefano Zampini 
10609566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10617a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1062c6b011d8SStefano Zampini   }
10633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
106447c6ae99SBarry Smith }
106547c6ae99SBarry Smith 
10661411c6eeSJed Brown /*@
1067bb7acecfSBarry Smith    DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10681411c6eeSJed Brown 
106920f4b53cSBarry Smith    Collective
10701411c6eeSJed Brown 
10711411c6eeSJed Brown    Input Parameter:
1072bb7acecfSBarry Smith .  dm - the `DM` that provides the mapping
10731411c6eeSJed Brown 
10741411c6eeSJed Brown    Output Parameter:
10751411c6eeSJed Brown .  ltog - the mapping
10761411c6eeSJed Brown 
1077bb7acecfSBarry Smith    Level: advanced
10781411c6eeSJed Brown 
10791411c6eeSJed Brown    Notes:
1080bb7acecfSBarry Smith    The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10811411c6eeSJed Brown 
1082bb7acecfSBarry Smith    Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1083bb7acecfSBarry Smith    need to use this function with those objects.
1084bb7acecfSBarry Smith 
1085bb7acecfSBarry Smith    This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1086bb7acecfSBarry Smith 
10871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1088bb7acecfSBarry Smith           `DMCreateMatrix()`
10891411c6eeSJed Brown @*/
1090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1091d71ae5a4SJacob Faibussowitsch {
10920be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
10931411c6eeSJed Brown 
10941411c6eeSJed Brown   PetscFunctionBegin;
10951411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10961411c6eeSJed Brown   PetscValidPointer(ltog, 2);
10971411c6eeSJed Brown   if (!dm->ltogmap) {
109837d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
109937d0c07bSMatthew G Knepley 
11009566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
110137d0c07bSMatthew G Knepley     if (section) {
1102a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
110337d0c07bSMatthew G Knepley       PetscInt       *ltog;
1104ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
110537d0c07bSMatthew G Knepley 
11069566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11079566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11089566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
111037d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1111e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
111237d0c07bSMatthew G Knepley 
111337d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11149566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11159566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11169566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11179566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11181a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11191a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1120ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11215227eafbSStefano Zampini 
1122e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11235227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1124e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1125e6befd46SJed Brown             cind++;
1126e6befd46SJed Brown           } else {
11275227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1128e6befd46SJed Brown           }
112937d0c07bSMatthew G Knepley         }
113037d0c07bSMatthew G Knepley       }
1131bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11329371c9d4SSatish Balay       bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs;
11339371c9d4SSatish Balay       bsLocal[1] = bs;
11349566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11359371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11369371c9d4SSatish Balay         bs = 1;
11379371c9d4SSatish Balay       } else {
11389371c9d4SSatish Balay         bs = bsMinMax[0];
11399371c9d4SSatish Balay       }
11407591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11417591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1142ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1143ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1144ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1145ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1146ca469d19SJed Brown         }
1147ccf3bd66SMatthew G. Knepley         n /= bs;
1148ccf3bd66SMatthew G. Knepley       }
11499566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1150dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
115137d0c07bSMatthew G Knepley   }
11521411c6eeSJed Brown   *ltog = dm->ltogmap;
11533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11541411c6eeSJed Brown }
11551411c6eeSJed Brown 
11561411c6eeSJed Brown /*@
1157bb7acecfSBarry Smith    DMGetBlockSize - Gets the inherent block size associated with a `DM`
11581411c6eeSJed Brown 
11591411c6eeSJed Brown    Not Collective
11601411c6eeSJed Brown 
11611411c6eeSJed Brown    Input Parameter:
1162bb7acecfSBarry Smith .  dm - the `DM` with block structure
11631411c6eeSJed Brown 
11641411c6eeSJed Brown    Output Parameter:
11651411c6eeSJed Brown .  bs - the block size, 1 implies no exploitable block structure
11661411c6eeSJed Brown 
11671411c6eeSJed Brown    Level: intermediate
11681411c6eeSJed Brown 
1169bb7acecfSBarry Smith    Note:
1170bb7acecfSBarry Smith    This might be the number of degrees of freedom at each grid point for a structured grid.
1171bb7acecfSBarry Smith 
1172bb7acecfSBarry Smith    Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1173bb7acecfSBarry Smith    rather different locations in the vectors may have a different block size.
1174bb7acecfSBarry Smith 
11751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11761411c6eeSJed Brown @*/
1177d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1178d71ae5a4SJacob Faibussowitsch {
11791411c6eeSJed Brown   PetscFunctionBegin;
11801411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1181534a8f05SLisandro Dalcin   PetscValidIntPointer(bs, 2);
11827a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
11831411c6eeSJed Brown   *bs = dm->bs;
11843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11851411c6eeSJed Brown }
11861411c6eeSJed Brown 
118748eeb7c8SBarry Smith /*@C
1188bb7acecfSBarry Smith     DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1189bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
119047c6ae99SBarry Smith 
119120f4b53cSBarry Smith     Collective
119247c6ae99SBarry Smith 
1193d8d19677SJose E. Roman     Input Parameters:
1194bb7acecfSBarry Smith +   dmc - the `DM` object
1195bb7acecfSBarry Smith -   dmf - the second, finer `DM` object
119647c6ae99SBarry Smith 
1197d8d19677SJose E. Roman     Output Parameters:
119847c6ae99SBarry Smith +  mat - the interpolation
1199bb7acecfSBarry Smith -  vec - the scaling (optional), see `DMCreateInterpolationScale()`
120047c6ae99SBarry Smith 
120147c6ae99SBarry Smith     Level: developer
120247c6ae99SBarry Smith 
120395452b02SPatrick Sanan     Notes:
1204bb7acecfSBarry Smith     For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1205bb7acecfSBarry Smith     DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1206d52bd9f3SBarry Smith 
1207bb7acecfSBarry Smith     For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1208bb7acecfSBarry Smith     vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
120985afcc9aSBarry Smith 
12101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
121147c6ae99SBarry Smith @*/
1212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1213d71ae5a4SJacob Faibussowitsch {
121447c6ae99SBarry Smith   PetscFunctionBegin;
1215a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1216a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
1217c7d20fa0SStefano Zampini   PetscValidPointer(mat, 3);
12189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1219dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12209566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122247c6ae99SBarry Smith }
122347c6ae99SBarry Smith 
12243ad4599aSBarry Smith /*@
1225bb7acecfSBarry Smith     DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is the transpose of the interpolation between the `DM`.
1226bb7acecfSBarry Smith     xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) restriction. In other words xcoarse is the coarse
1227bb7acecfSBarry Smith     representation of xfine.
12282ed6491fSPatrick Sanan 
12292ed6491fSPatrick Sanan   Input Parameters:
1230bb7acecfSBarry Smith +      dac - `DM` that defines a coarse mesh
1231bb7acecfSBarry Smith .      daf - `DM` that defines a fine mesh
12322ed6491fSPatrick Sanan -      mat - the restriction (or interpolation operator) from fine to coarse
12332ed6491fSPatrick Sanan 
12342ed6491fSPatrick Sanan   Output Parameter:
12352ed6491fSPatrick Sanan .    scale - the scaled vector
12362ed6491fSPatrick Sanan 
1237bb7acecfSBarry Smith   Level: advanced
12382ed6491fSPatrick Sanan 
123920f4b53cSBarry Smith   Developer Note:
1240bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1241e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1242e9c74fd6SRichard Tran Mills 
12431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, DMCreateRestriction()`, `DMCreateGlobalVector()`
12442ed6491fSPatrick Sanan @*/
1245d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1246d71ae5a4SJacob Faibussowitsch {
12472ed6491fSPatrick Sanan   Vec         fine;
12482ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12499704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1250e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12519704db99SRichard Tran Mills #endif
12522ed6491fSPatrick Sanan 
12532ed6491fSPatrick Sanan   PetscFunctionBegin;
12549566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12559566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12569566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12579704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12589704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12599704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12609704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12619566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1262e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12639566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12649566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12659566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
126683aa49f4SRichard Tran Mills   }
12679704db99SRichard Tran Mills #endif
12689566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12699566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12709566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12722ed6491fSPatrick Sanan }
12732ed6491fSPatrick Sanan 
12742ed6491fSPatrick Sanan /*@
1275bb7acecfSBarry Smith     DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1276bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12773ad4599aSBarry Smith 
127820f4b53cSBarry Smith     Collective
12793ad4599aSBarry Smith 
1280d8d19677SJose E. Roman     Input Parameters:
1281bb7acecfSBarry Smith +   dmc - the `DM` object
1282bb7acecfSBarry Smith -   dmf - the second, finer `DM` object
12833ad4599aSBarry Smith 
12843ad4599aSBarry Smith     Output Parameter:
12853ad4599aSBarry Smith .  mat - the restriction
12863ad4599aSBarry Smith 
12873ad4599aSBarry Smith     Level: developer
12883ad4599aSBarry Smith 
1289bb7acecfSBarry Smith     Note:
1290bb7acecfSBarry Smith     This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1291bb7acecfSBarry Smith     matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
12923ad4599aSBarry Smith 
12931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
12943ad4599aSBarry Smith @*/
1295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1296d71ae5a4SJacob Faibussowitsch {
12973ad4599aSBarry Smith   PetscFunctionBegin;
1298a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1299a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13005a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1302dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13039566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13053ad4599aSBarry Smith }
13063ad4599aSBarry Smith 
130747c6ae99SBarry Smith /*@
1308bb7acecfSBarry Smith     DMCreateInjection - Gets injection matrix between two `DM` objects. This is an operator that applied to a vector obtained with
1309bb7acecfSBarry Smith     `DMCreateGlobalVector()` on the fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting the values
1310bb7acecfSBarry Smith     on the coarse grid points. This compares to the operator obtained by `DMCreateRestriction()` or the transpose of the operator obtained
1311bb7acecfSBarry Smith     by `DMCreateInterpolation()` that uses a "local weighted average" of the values around the coarse grid point as the coarse grid value.
131247c6ae99SBarry Smith 
131320f4b53cSBarry Smith     Collective
131447c6ae99SBarry Smith 
1315d8d19677SJose E. Roman     Input Parameters:
1316bb7acecfSBarry Smith +   dac - the `DM` object
1317bb7acecfSBarry Smith -   daf - the second, finer `DM` object
131847c6ae99SBarry Smith 
131947c6ae99SBarry Smith     Output Parameter:
13206dbf9973SLawrence Mitchell .   mat - the injection
132147c6ae99SBarry Smith 
132247c6ae99SBarry Smith     Level: developer
132347c6ae99SBarry Smith 
1324bb7acecfSBarry Smith    Note:
1325bb7acecfSBarry Smith     For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1326bb7acecfSBarry Smith         `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
132785afcc9aSBarry Smith 
13281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1329bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
133047c6ae99SBarry Smith @*/
1331d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1332d71ae5a4SJacob Faibussowitsch {
133347c6ae99SBarry Smith   PetscFunctionBegin;
1334a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1335a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13365a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1338dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
134147c6ae99SBarry Smith }
134247c6ae99SBarry Smith 
1343b412c318SBarry Smith /*@
1344bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1345bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1346bd041c0cSMatthew G. Knepley 
134720f4b53cSBarry Smith   Collective
1348bd041c0cSMatthew G. Knepley 
1349d8d19677SJose E. Roman   Input Parameters:
1350bb7acecfSBarry Smith + dmc - the target `DM` object
1351bb7acecfSBarry Smith - dmf - the source `DM` object
1352bd041c0cSMatthew G. Knepley 
1353bd041c0cSMatthew G. Knepley   Output Parameter:
1354b4937a87SMatthew G. Knepley . mat - the mass matrix
1355bd041c0cSMatthew G. Knepley 
1356bd041c0cSMatthew G. Knepley   Level: developer
1357bd041c0cSMatthew G. Knepley 
1358bb7acecfSBarry Smith   Notes:
1359bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1360bb7acecfSBarry Smith 
136120f4b53cSBarry Smith   if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1362bb7acecfSBarry Smith 
13631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1364bd041c0cSMatthew G. Knepley @*/
1365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1366d71ae5a4SJacob Faibussowitsch {
1367bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1368b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1369b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13705a84ad33SLisandro Dalcin   PetscValidPointer(mat, 3);
13715b8ffe73SMark Adams   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0));
1372dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13735b8ffe73SMark Adams   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0));
13743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1375b4937a87SMatthew G. Knepley }
1376b4937a87SMatthew G. Knepley 
1377b4937a87SMatthew G. Knepley /*@
1378bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1379b4937a87SMatthew G. Knepley 
138020f4b53cSBarry Smith   Collective
1381b4937a87SMatthew G. Knepley 
1382b4937a87SMatthew G. Knepley   Input Parameter:
1383bb7acecfSBarry Smith . dm - the `DM` object
1384b4937a87SMatthew G. Knepley 
1385b4937a87SMatthew G. Knepley   Output Parameter:
1386bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector
1387b4937a87SMatthew G. Knepley 
1388b4937a87SMatthew G. Knepley   Level: developer
1389b4937a87SMatthew G. Knepley 
1390bb7acecfSBarry Smith   Note:
1391bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1392bb7acecfSBarry Smith 
13931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1394b4937a87SMatthew G. Knepley @*/
1395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm)
1396d71ae5a4SJacob Faibussowitsch {
1397b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1398b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1399b4937a87SMatthew G. Knepley   PetscValidPointer(lm, 2);
1400dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createmassmatrixlumped, lm);
14013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1402bd041c0cSMatthew G. Knepley }
1403bd041c0cSMatthew G. Knepley 
1404bd041c0cSMatthew G. Knepley /*@
1405bb7acecfSBarry Smith     DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1406bb7acecfSBarry Smith     of a PDE on the `DM`.
140747c6ae99SBarry Smith 
140820f4b53cSBarry Smith     Collective
140947c6ae99SBarry Smith 
1410d8d19677SJose E. Roman     Input Parameters:
1411bb7acecfSBarry Smith +   dm - the `DM` object
1412bb7acecfSBarry Smith -   ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
141347c6ae99SBarry Smith 
141447c6ae99SBarry Smith     Output Parameter:
141547c6ae99SBarry Smith .   coloring - the coloring
141647c6ae99SBarry Smith 
14171bf8429eSBarry Smith     Level: developer
14181bf8429eSBarry Smith 
1419ec5066bdSBarry Smith     Notes:
1420bb7acecfSBarry Smith     Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1421bb7acecfSBarry Smith     matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1422ec5066bdSBarry Smith 
1423bb7acecfSBarry Smith     This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14241bf8429eSBarry Smith     For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14251bf8429eSBarry Smith     otherwise an error will be generated.
1426ec5066bdSBarry Smith 
14271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1428aab9d709SJed Brown @*/
1429d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1430d71ae5a4SJacob Faibussowitsch {
143147c6ae99SBarry Smith   PetscFunctionBegin;
1432171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14335a84ad33SLisandro Dalcin   PetscValidPointer(coloring, 3);
1434dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
143647c6ae99SBarry Smith }
143747c6ae99SBarry Smith 
1438b412c318SBarry Smith /*@
1439bb7acecfSBarry Smith     DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
144047c6ae99SBarry Smith 
144120f4b53cSBarry Smith     Collective
144247c6ae99SBarry Smith 
144347c6ae99SBarry Smith     Input Parameter:
1444bb7acecfSBarry Smith .   dm - the `DM` object
144547c6ae99SBarry Smith 
144647c6ae99SBarry Smith     Output Parameter:
144747c6ae99SBarry Smith .   mat - the empty Jacobian
144847c6ae99SBarry Smith 
144920f4b53cSBarry Smith     Options Database Key:
1450bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1451f27dd7c6SMatthew G. Knepley 
145220f4b53cSBarry Smith     Level: beginner
145320f4b53cSBarry Smith 
145495452b02SPatrick Sanan     Notes:
145595452b02SPatrick Sanan     This properly preallocates the number of nonzeros in the sparse matrix so you
145694013140SBarry Smith     do not need to do it yourself.
145794013140SBarry Smith 
145894013140SBarry Smith     By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1459bb7acecfSBarry Smith     the nonzero pattern call `DMSetMatrixPreallocateOnly()`
146094013140SBarry Smith 
1461bb7acecfSBarry Smith     For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
146294013140SBarry Smith     internally by PETSc.
146394013140SBarry Smith 
1464bb7acecfSBarry Smith     For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1465bb7acecfSBarry Smith     `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
146694013140SBarry Smith 
14671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1468aab9d709SJed Brown @*/
1469d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1470d71ae5a4SJacob Faibussowitsch {
147147c6ae99SBarry Smith   PetscFunctionBegin;
1472171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1473064a246eSJacob Faibussowitsch   PetscValidPointer(mat, 2);
14749566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
14759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1476dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
147776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1478c6b011d8SStefano Zampini     DM mdm;
1479c6b011d8SStefano Zampini 
14809566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
14817a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1482c6b011d8SStefano Zampini   }
1483e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1484e5e52638SMatthew G. Knepley   if (dm->Nf) {
1485e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1486649ef022SMatthew Knepley     PetscInt     Nf, f;
1487e571a35bSMatthew G. Knepley 
14889566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1489649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1490649ef022SMatthew Knepley       if (dm->nullspaceConstructors[f]) {
14919566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
14929566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
14939566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1494649ef022SMatthew Knepley         break;
1495e571a35bSMatthew G. Knepley       }
1496649ef022SMatthew Knepley     }
1497649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1498649ef022SMatthew Knepley       if (dm->nearnullspaceConstructors[f]) {
14999566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15009566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15019566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1502e571a35bSMatthew G. Knepley       }
1503e571a35bSMatthew G. Knepley     }
1504e571a35bSMatthew G. Knepley   }
15059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
150747c6ae99SBarry Smith }
150847c6ae99SBarry Smith 
1509732e2eb9SMatthew G Knepley /*@
1510bb7acecfSBarry Smith   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and `ISLocalToGlobalMapping` will be
1511bb7acecfSBarry Smith   properly set, but the data structures to store values in the matrices will not be preallocated. This is most useful to reduce initialization costs when
1512bb7acecfSBarry Smith   `MatSetPreallocationCOO()` and `MatSetValuesCOO()` will be used.
1513aa0f6e3cSJed Brown 
151420f4b53cSBarry Smith   Logically Collective
1515aa0f6e3cSJed Brown 
1516aa0f6e3cSJed Brown   Input Parameters:
1517bb7acecfSBarry Smith + dm - the `DM`
1518bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1519aa0f6e3cSJed Brown 
1520aa0f6e3cSJed Brown   Level: developer
1521aa0f6e3cSJed Brown 
15221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1523aa0f6e3cSJed Brown @*/
1524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1525d71ae5a4SJacob Faibussowitsch {
1526aa0f6e3cSJed Brown   PetscFunctionBegin;
1527aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1528aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1530aa0f6e3cSJed Brown }
1531aa0f6e3cSJed Brown 
1532aa0f6e3cSJed Brown /*@
1533bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1534732e2eb9SMatthew G Knepley     preallocated but the nonzero structure and zero values will not be set.
1535732e2eb9SMatthew G Knepley 
153620f4b53cSBarry Smith   Logically Collective
1537732e2eb9SMatthew G Knepley 
1538d8d19677SJose E. Roman   Input Parameters:
1539bb7acecfSBarry Smith + dm - the `DM`
1540bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1541732e2eb9SMatthew G Knepley 
154220f4b53cSBarry Smith   Options Database Key:
1543bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1544f27dd7c6SMatthew G. Knepley 
154520f4b53cSBarry Smith   Level: developer
154620f4b53cSBarry Smith 
15471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1548732e2eb9SMatthew G Knepley @*/
1549d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1550d71ae5a4SJacob Faibussowitsch {
1551732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1552732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1553732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1555732e2eb9SMatthew G Knepley }
1556732e2eb9SMatthew G Knepley 
1557b06ff27eSHong Zhang /*@
1558bb7acecfSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created
1559bb7acecfSBarry Smith     but the array for numerical values will not be allocated.
1560b06ff27eSHong Zhang 
156120f4b53cSBarry Smith   Logically Collective
1562b06ff27eSHong Zhang 
1563d8d19677SJose E. Roman   Input Parameters:
1564bb7acecfSBarry Smith + dm - the `DM`
1565da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure
1566b06ff27eSHong Zhang 
1567b06ff27eSHong Zhang   Level: developer
1568bb7acecfSBarry Smith 
15691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1570b06ff27eSHong Zhang @*/
1571d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1572d71ae5a4SJacob Faibussowitsch {
1573b06ff27eSHong Zhang   PetscFunctionBegin;
1574b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1575b06ff27eSHong Zhang   dm->structure_only = only;
15763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1577b06ff27eSHong Zhang }
1578b06ff27eSHong Zhang 
1579863027abSJed Brown /*@
1580863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1581863027abSJed Brown 
158220f4b53cSBarry Smith   Logically Collective
1583863027abSJed Brown 
1584863027abSJed Brown   Input Parameters:
1585863027abSJed Brown + dm - the `DM`
1586863027abSJed Brown - btype - block by topological point or field node
1587863027abSJed Brown 
158820f4b53cSBarry Smith   Options Database Key:
15890e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1590863027abSJed Brown 
159120f4b53cSBarry Smith   Level: advanced
159220f4b53cSBarry Smith 
15931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1594863027abSJed Brown @*/
1595863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1596863027abSJed Brown {
1597863027abSJed Brown   PetscFunctionBegin;
1598863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1599863027abSJed Brown   dm->blocking_type = btype;
16003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1601863027abSJed Brown }
1602863027abSJed Brown 
1603863027abSJed Brown /*@
1604863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1605863027abSJed Brown 
1606863027abSJed Brown   Not Collective
1607863027abSJed Brown 
16082fe279fdSBarry Smith   Input Parameter:
1609863027abSJed Brown . dm - the `DM`
1610863027abSJed Brown 
16112fe279fdSBarry Smith   Output Parameter:
1612863027abSJed Brown . btype - block by topological point or field node
1613863027abSJed Brown 
1614863027abSJed Brown   Level: advanced
1615863027abSJed Brown 
16161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1617863027abSJed Brown @*/
1618863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1619863027abSJed Brown {
1620863027abSJed Brown   PetscFunctionBegin;
1621863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1622863027abSJed Brown   PetscValidPointer(btype, 2);
1623863027abSJed Brown   *btype = dm->blocking_type;
16243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1625863027abSJed Brown }
1626863027abSJed Brown 
1627a89ea682SMatthew G Knepley /*@C
1628bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1629a89ea682SMatthew G Knepley 
1630a89ea682SMatthew G Knepley   Not Collective
1631a89ea682SMatthew G Knepley 
1632a89ea682SMatthew G Knepley   Input Parameters:
1633bb7acecfSBarry Smith + dm - the `DM` object
1634a5b23f4aSJose E. Roman . count - The minimum size
163520f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1636a89ea682SMatthew G Knepley 
1637a89ea682SMatthew G Knepley   Output Parameter:
1638a89ea682SMatthew G Knepley . array - the work array
1639a89ea682SMatthew G Knepley 
1640a89ea682SMatthew G Knepley   Level: developer
1641a89ea682SMatthew G Knepley 
1642bb7acecfSBarry Smith   Note:
1643da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1644bb7acecfSBarry Smith 
1645bb7acecfSBarry Smith   The array may contain nonzero values
1646bb7acecfSBarry Smith 
16471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1648a89ea682SMatthew G Knepley @*/
1649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1650d71ae5a4SJacob Faibussowitsch {
1651aa1993deSMatthew G Knepley   DMWorkLink  link;
165269291d52SBarry Smith   PetscMPIInt dsize;
1653a89ea682SMatthew G Knepley 
1654a89ea682SMatthew G Knepley   PetscFunctionBegin;
1655a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1656aa1993deSMatthew G Knepley   PetscValidPointer(mem, 4);
1657*442f3b32SStefano Zampini   if (!count) {
1658*442f3b32SStefano Zampini     *(void **)mem = NULL;
1659*442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1660*442f3b32SStefano Zampini   }
1661aa1993deSMatthew G Knepley   if (dm->workin) {
1662aa1993deSMatthew G Knepley     link       = dm->workin;
1663aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1664aa1993deSMatthew G Knepley   } else {
16654dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1666a89ea682SMatthew G Knepley   }
16679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Type_size(dtype, &dsize));
16685056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
16699566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
16709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1671854ce69bSBarry Smith     link->bytes = dsize * count;
1672aa1993deSMatthew G Knepley   }
1673aa1993deSMatthew G Knepley   link->next  = dm->workout;
1674aa1993deSMatthew G Knepley   dm->workout = link;
1675cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin))
167600d952a4SJed Brown   VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count);
167700d952a4SJed Brown   VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count);
167800d952a4SJed Brown #endif
1679aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
16803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1681a89ea682SMatthew G Knepley }
1682a89ea682SMatthew G Knepley 
1683aa1993deSMatthew G Knepley /*@C
1684bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1685aa1993deSMatthew G Knepley 
1686aa1993deSMatthew G Knepley   Not Collective
1687aa1993deSMatthew G Knepley 
1688aa1993deSMatthew G Knepley   Input Parameters:
1689bb7acecfSBarry Smith + dm - the `DM` object
1690a5b23f4aSJose E. Roman . count - The minimum size
169120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1692aa1993deSMatthew G Knepley 
1693aa1993deSMatthew G Knepley   Output Parameter:
1694aa1993deSMatthew G Knepley . array - the work array
1695aa1993deSMatthew G Knepley 
1696aa1993deSMatthew G Knepley   Level: developer
1697aa1993deSMatthew G Knepley 
169820f4b53cSBarry Smith   Developer Note:
1699bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1700147403d9SBarry Smith 
17011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1702aa1993deSMatthew G Knepley @*/
1703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1704d71ae5a4SJacob Faibussowitsch {
1705aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1706aa1993deSMatthew G Knepley 
1707aa1993deSMatthew G Knepley   PetscFunctionBegin;
1708aa1993deSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1709aa1993deSMatthew G Knepley   PetscValidPointer(mem, 4);
1710*442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1711aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1712aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1713aa1993deSMatthew G Knepley       *p            = link->next;
1714aa1993deSMatthew G Knepley       link->next    = dm->workin;
1715aa1993deSMatthew G Knepley       dm->workin    = link;
17160298fd71SBarry Smith       *(void **)mem = NULL;
17173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1718aa1993deSMatthew G Knepley     }
1719aa1993deSMatthew G Knepley   }
1720aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1721aa1993deSMatthew G Knepley }
1722e7c4fc90SDmitry Karpeev 
17238cda7954SMatthew G. Knepley /*@C
1724bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1725bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17268cda7954SMatthew G. Knepley 
172720f4b53cSBarry Smith   Logically Collective; No Fortran Support
17288cda7954SMatthew G. Knepley 
17298cda7954SMatthew G. Knepley   Input Parameters:
1730bb7acecfSBarry Smith + dm     - The `DM`
17318cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17328cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17338cda7954SMatthew G. Knepley 
173420f4b53cSBarry Smith   Calling sequence of `nullsp`:
1735147403d9SBarry Smith .vb
1736147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1737147403d9SBarry Smith .ve
1738bb7acecfSBarry Smith +  dm        - The present `DM`
1739bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1740147403d9SBarry Smith .  field     - The field number in dm
1741147403d9SBarry Smith -  nullSpace - The nullspace for the given field
17428cda7954SMatthew G. Knepley 
174349762cbcSSatish Balay   Level: intermediate
174449762cbcSSatish Balay 
17451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1746147403d9SBarry Smith @*/
1747d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1748d71ae5a4SJacob Faibussowitsch {
1749435a35e8SMatthew G Knepley   PetscFunctionBegin;
1750435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
17517a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1752435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1754435a35e8SMatthew G Knepley }
1755435a35e8SMatthew G Knepley 
17568cda7954SMatthew G. Knepley /*@C
1757bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17588cda7954SMatthew G. Knepley 
175920f4b53cSBarry Smith   Not Collective; No Fortran Support
17608cda7954SMatthew G. Knepley 
17618cda7954SMatthew G. Knepley   Input Parameters:
1762bb7acecfSBarry Smith + dm     - The `DM`
17638cda7954SMatthew G. Knepley - field  - The field number for the nullspace
17648cda7954SMatthew G. Knepley 
17658cda7954SMatthew G. Knepley   Output Parameter:
17668cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
17678cda7954SMatthew G. Knepley 
176820f4b53cSBarry Smith   Calling sequence of `nullsp`:
1769147403d9SBarry Smith .vb
1770147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1771147403d9SBarry Smith .ve
1772147403d9SBarry Smith +  dm        - The present DM
1773147403d9SBarry Smith .  origField - The field number given above, in the original DM
1774147403d9SBarry Smith .  field     - The field number in dm
1775147403d9SBarry Smith -  nullSpace - The nullspace for the given field
17768cda7954SMatthew G. Knepley 
177749762cbcSSatish Balay    Level: intermediate
177849762cbcSSatish Balay 
17791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1780147403d9SBarry Smith @*/
1781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1782d71ae5a4SJacob Faibussowitsch {
17830a50eb56SMatthew G. Knepley   PetscFunctionBegin;
17840a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1785f9d4088aSMatthew G. Knepley   PetscValidPointer(nullsp, 3);
17867a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
17870a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
17883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17890a50eb56SMatthew G. Knepley }
17900a50eb56SMatthew G. Knepley 
17918cda7954SMatthew G. Knepley /*@C
1792bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
17938cda7954SMatthew G. Knepley 
179420f4b53cSBarry Smith   Logically Collective; No Fortran Support
17958cda7954SMatthew G. Knepley 
17968cda7954SMatthew G. Knepley   Input Parameters:
1797bb7acecfSBarry Smith + dm     - The `DM`
17988cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17998cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18008cda7954SMatthew G. Knepley 
180120f4b53cSBarry Smith   Calling sequence of `nullsp`:
1802147403d9SBarry Smith .vb
1803147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1804147403d9SBarry Smith .ve
1805bb7acecfSBarry Smith +  dm        - The present `DM`
1806bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1807147403d9SBarry Smith .  field     - The field number in dm
1808147403d9SBarry Smith -  nullSpace - The nullspace for the given field
18098cda7954SMatthew G. Knepley 
181049762cbcSSatish Balay    Level: intermediate
181149762cbcSSatish Balay 
18121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1813bb7acecfSBarry Smith           `MatNullSpace`
1814147403d9SBarry Smith @*/
1815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1816d71ae5a4SJacob Faibussowitsch {
1817f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1818f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18197a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1820f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1822f9d4088aSMatthew G. Knepley }
1823f9d4088aSMatthew G. Knepley 
18248cda7954SMatthew G. Knepley /*@C
1825bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18268cda7954SMatthew G. Knepley 
182720f4b53cSBarry Smith   Not Collective; No Fortran Support
18288cda7954SMatthew G. Knepley 
18298cda7954SMatthew G. Knepley   Input Parameters:
1830bb7acecfSBarry Smith + dm     - The `DM`
18318cda7954SMatthew G. Knepley - field  - The field number for the nullspace
18328cda7954SMatthew G. Knepley 
18338cda7954SMatthew G. Knepley   Output Parameter:
18348cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18358cda7954SMatthew G. Knepley 
183620f4b53cSBarry Smith   Calling sequence of `nullsp`:
1837147403d9SBarry Smith .vb
1838147403d9SBarry Smith     PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)
1839147403d9SBarry Smith .ve
1840bb7acecfSBarry Smith +  dm        - The present `DM`
1841bb7acecfSBarry Smith .  origField - The field number given above, in the original `DM`
1842147403d9SBarry Smith .  field     - The field number in dm
1843147403d9SBarry Smith -  nullSpace - The nullspace for the given field
18448cda7954SMatthew G. Knepley 
184549762cbcSSatish Balay    Level: intermediate
184649762cbcSSatish Balay 
18471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1848bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1849147403d9SBarry Smith @*/
1850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *))
1851d71ae5a4SJacob Faibussowitsch {
1852f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1853f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1854f9d4088aSMatthew G. Knepley   PetscValidPointer(nullsp, 3);
18557a8be351SBarry Smith   PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field);
1856f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1858f9d4088aSMatthew G. Knepley }
1859f9d4088aSMatthew G. Knepley 
18604f3b5142SJed Brown /*@C
1861bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18624d343eeaSMatthew G Knepley 
186320f4b53cSBarry Smith   Not Collective; No Fortran Support
18644d343eeaSMatthew G Knepley 
18654d343eeaSMatthew G Knepley   Input Parameter:
1866bb7acecfSBarry Smith . dm - the `DM` object
18674d343eeaSMatthew G Knepley 
18684d343eeaSMatthew G Knepley   Output Parameters:
186920f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
187020f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested)
187120f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
18724d343eeaSMatthew G Knepley 
18734d343eeaSMatthew G Knepley   Level: intermediate
18744d343eeaSMatthew G Knepley 
1875bb7acecfSBarry Smith   Note:
187621c9b008SJed Brown   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
1877bb7acecfSBarry Smith   `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with
1878bb7acecfSBarry Smith   `PetscFree()`.
187921c9b008SJed Brown 
1880bb7acecfSBarry Smith   Developer Note:
1881bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1882bb7acecfSBarry Smith   likely be removed.
1883bb7acecfSBarry Smith 
18841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1885bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
18864d343eeaSMatthew G Knepley @*/
1887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields)
1888d71ae5a4SJacob Faibussowitsch {
188937d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
18904d343eeaSMatthew G Knepley 
18914d343eeaSMatthew G Knepley   PetscFunctionBegin;
18924d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
189369ca1f37SDmitry Karpeev   if (numFields) {
1894534a8f05SLisandro Dalcin     PetscValidIntPointer(numFields, 2);
189569ca1f37SDmitry Karpeev     *numFields = 0;
189669ca1f37SDmitry Karpeev   }
189737d0c07bSMatthew G Knepley   if (fieldNames) {
189837d0c07bSMatthew G Knepley     PetscValidPointer(fieldNames, 3);
18990298fd71SBarry Smith     *fieldNames = NULL;
190069ca1f37SDmitry Karpeev   }
190169ca1f37SDmitry Karpeev   if (fields) {
190269ca1f37SDmitry Karpeev     PetscValidPointer(fields, 4);
19030298fd71SBarry Smith     *fields = NULL;
190469ca1f37SDmitry Karpeev   }
19059566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
190637d0c07bSMatthew G Knepley   if (section) {
19073a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
190837d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
190937d0c07bSMatthew G Knepley 
19109566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19119566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19139566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
191437d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
191537d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19169566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
191737d0c07bSMatthew G Knepley     }
191837d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
191937d0c07bSMatthew G Knepley       PetscInt gdof;
192037d0c07bSMatthew G Knepley 
19219566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
192237d0c07bSMatthew G Knepley       if (gdof > 0) {
192337d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19243a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
192537d0c07bSMatthew G Knepley 
19269566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19279566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19283a544194SStefano Zampini           fpdof = fdof - fcdof;
19293a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19303a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19313a544194SStefano Zampini             fieldNc[f] = 1;
19323a544194SStefano Zampini           }
19333a544194SStefano Zampini           fieldSizes[f] += fpdof;
193437d0c07bSMatthew G Knepley         }
193537d0c07bSMatthew G Knepley       }
193637d0c07bSMatthew G Knepley     }
193737d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19389566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
193937d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
194037d0c07bSMatthew G Knepley     }
194137d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
194237d0c07bSMatthew G Knepley       PetscInt gdof, goff;
194337d0c07bSMatthew G Knepley 
19449566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
194537d0c07bSMatthew G Knepley       if (gdof > 0) {
19469566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
194737d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
194837d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
194937d0c07bSMatthew G Knepley 
19509566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19519566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1952ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
195337d0c07bSMatthew G Knepley         }
195437d0c07bSMatthew G Knepley       }
195537d0c07bSMatthew G Knepley     }
19568865f1eaSKarl Rupp     if (numFields) *numFields = nF;
195737d0c07bSMatthew G Knepley     if (fieldNames) {
19589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
195937d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
196037d0c07bSMatthew G Knepley         const char *fieldName;
196137d0c07bSMatthew G Knepley 
19629566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
19639566063dSJacob Faibussowitsch         PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f]));
196437d0c07bSMatthew G Knepley       }
196537d0c07bSMatthew G Knepley     }
196637d0c07bSMatthew G Knepley     if (fields) {
19679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
196837d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
19693a544194SStefano Zampini         PetscInt bs, in[2], out[2];
19703a544194SStefano Zampini 
19719566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
19723a544194SStefano Zampini         in[0] = -fieldNc[f];
19733a544194SStefano Zampini         in[1] = fieldNc[f];
19741c2dc1cbSBarry Smith         PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
19753a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
19769566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
197737d0c07bSMatthew G Knepley       }
197837d0c07bSMatthew G Knepley     }
19799566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
1980dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
19813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19824d343eeaSMatthew G Knepley }
19834d343eeaSMatthew G Knepley 
198416621825SDmitry Karpeev /*@C
1985bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
1986bb7acecfSBarry Smith                           corresponding to different fields: each `IS` contains the global indices of the dofs of the
1987bb7acecfSBarry Smith                           corresponding field, defined by `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
1988bb7acecfSBarry Smith                           The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
1989e7c4fc90SDmitry Karpeev 
199020f4b53cSBarry Smith   Not Collective; No Fortran Support
1991e7c4fc90SDmitry Karpeev 
1992e7c4fc90SDmitry Karpeev   Input Parameter:
1993bb7acecfSBarry Smith . dm - the `DM` object
1994e7c4fc90SDmitry Karpeev 
1995e7c4fc90SDmitry Karpeev   Output Parameters:
199620f4b53cSBarry Smith + len       - The number of fields (or `NULL` if not requested)
199720f4b53cSBarry Smith . namelist  - The name for each field (or `NULL` if not requested)
199820f4b53cSBarry Smith . islist    - The global indices for each field (or `NULL` if not requested)
199920f4b53cSBarry Smith - dmlist    - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2000e7c4fc90SDmitry Karpeev 
2001e7c4fc90SDmitry Karpeev   Level: intermediate
2002e7c4fc90SDmitry Karpeev 
2003bb7acecfSBarry Smith   Note:
2004e7c4fc90SDmitry Karpeev   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2005bb7acecfSBarry Smith   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2006bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2007e7c4fc90SDmitry Karpeev 
2008bb7acecfSBarry Smith   Developer Note:
2009bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2010bb7acecfSBarry Smith 
20111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2012e7c4fc90SDmitry Karpeev @*/
2013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist)
2014d71ae5a4SJacob Faibussowitsch {
2015e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2016e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20178865f1eaSKarl Rupp   if (len) {
2018534a8f05SLisandro Dalcin     PetscValidIntPointer(len, 2);
20198865f1eaSKarl Rupp     *len = 0;
20208865f1eaSKarl Rupp   }
20218865f1eaSKarl Rupp   if (namelist) {
20228865f1eaSKarl Rupp     PetscValidPointer(namelist, 3);
2023ea78f98cSLisandro Dalcin     *namelist = NULL;
20248865f1eaSKarl Rupp   }
20258865f1eaSKarl Rupp   if (islist) {
20268865f1eaSKarl Rupp     PetscValidPointer(islist, 4);
2027ea78f98cSLisandro Dalcin     *islist = NULL;
20288865f1eaSKarl Rupp   }
20298865f1eaSKarl Rupp   if (dmlist) {
20308865f1eaSKarl Rupp     PetscValidPointer(dmlist, 5);
2031ea78f98cSLisandro Dalcin     *dmlist = NULL;
20328865f1eaSKarl Rupp   }
2033f3f0edfdSDmitry Karpeev   /*
2034f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2035f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2036f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2037f3f0edfdSDmitry Karpeev    */
20387a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
203916621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2040435a35e8SMatthew G Knepley     PetscSection section;
2041435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2042435a35e8SMatthew G Knepley 
20439566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20449566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2045435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2046f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20479566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20489566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20499566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2050435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2051435a35e8SMatthew G Knepley         const char *fieldName;
2052435a35e8SMatthew G Knepley 
20539566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
205403dc3394SMatthew G. Knepley         if (namelist) {
20559566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
20569566063dSJacob Faibussowitsch           PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f]));
2057435a35e8SMatthew G Knepley         }
205803dc3394SMatthew G. Knepley       }
2059435a35e8SMatthew G Knepley     } else {
20609566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2061e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
20620298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2063e7c4fc90SDmitry Karpeev     }
2064dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
20653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
206616621825SDmitry Karpeev }
206716621825SDmitry Karpeev 
2068412a4547SAlexis Marboeuf /*@C
206920f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
207020f4b53cSBarry Smith                   The fields are defined by `DMCreateFieldIS()`.
2071435a35e8SMatthew G Knepley 
2072435a35e8SMatthew G Knepley   Not collective
2073435a35e8SMatthew G Knepley 
2074435a35e8SMatthew G Knepley   Input Parameters:
2075bb7acecfSBarry Smith + dm        - The `DM` object
2076bb7acecfSBarry Smith . numFields - The number of fields to select
20772adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2078435a35e8SMatthew G Knepley 
2079435a35e8SMatthew G Knepley   Output Parameters:
2080bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`
2081bb7acecfSBarry Smith - subdm - The `DM` for the subproblem
2082435a35e8SMatthew G Knepley 
208320f4b53cSBarry Smith   Level: intermediate
208420f4b53cSBarry Smith 
2085bb7acecfSBarry Smith   Note:
2086bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
20875d3b26e6SMatthew G. Knepley 
20881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `DM`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2089435a35e8SMatthew G Knepley @*/
2090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2091d71ae5a4SJacob Faibussowitsch {
2092435a35e8SMatthew G Knepley   PetscFunctionBegin;
2093435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2094dadcf809SJacob Faibussowitsch   PetscValidIntPointer(fields, 3);
20958865f1eaSKarl Rupp   if (is) PetscValidPointer(is, 4);
20968865f1eaSKarl Rupp   if (subdm) PetscValidPointer(subdm, 5);
2097dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
20983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2099435a35e8SMatthew G Knepley }
2100435a35e8SMatthew G Knepley 
21012adcc780SMatthew G. Knepley /*@C
2102bb7acecfSBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21032adcc780SMatthew G. Knepley 
21042adcc780SMatthew G. Knepley   Not collective
21052adcc780SMatthew G. Knepley 
2106d8d19677SJose E. Roman   Input Parameters:
2107bb7acecfSBarry Smith + dms - The `DM` objects
2108bb7acecfSBarry Smith - n - The number of `DM`s
21092adcc780SMatthew G. Knepley 
21102adcc780SMatthew G. Knepley   Output Parameters:
2111bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL
2112bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21132adcc780SMatthew G. Knepley 
211420f4b53cSBarry Smith   Level: intermediate
211520f4b53cSBarry Smith 
2116bb7acecfSBarry Smith   Note:
2117bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21185d3b26e6SMatthew G. Knepley 
21191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
21202adcc780SMatthew G. Knepley @*/
2121d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm)
2122d71ae5a4SJacob Faibussowitsch {
21232adcc780SMatthew G. Knepley   PetscInt i;
21242adcc780SMatthew G. Knepley 
21252adcc780SMatthew G. Knepley   PetscFunctionBegin;
21262adcc780SMatthew G. Knepley   PetscValidPointer(dms, 1);
2127ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21282adcc780SMatthew G. Knepley   if (is) PetscValidPointer(is, 3);
2129a42bd24dSMatthew G. Knepley   PetscValidPointer(superdm, 4);
2130bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2131bb7acecfSBarry Smith   if (n) {
2132b9d85ea2SLisandro Dalcin     DM dm = dms[0];
2133dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21342adcc780SMatthew G. Knepley   }
21353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21362adcc780SMatthew G. Knepley }
21372adcc780SMatthew G. Knepley 
213816621825SDmitry Karpeev /*@C
2139bb7acecfSBarry Smith   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a problem into subproblems
2140bb7acecfSBarry Smith                           corresponding to restrictions to pairs of nested subdomains: each `IS` contains the global
2141bb7acecfSBarry Smith                           indices of the dofs of the corresponding subdomains with in the dofs of the original `DM`.
2142bb7acecfSBarry Smith                           The inner subdomains conceptually define a nonoverlapping covering, while outer subdomains can overlap.
2143bb7acecfSBarry Smith                           The optional list of `DM`s define a `DM` for each subproblem.
214416621825SDmitry Karpeev 
214520f4b53cSBarry Smith   Not Collective
214616621825SDmitry Karpeev 
214716621825SDmitry Karpeev   Input Parameter:
2148bb7acecfSBarry Smith . dm - the `DM` object
214916621825SDmitry Karpeev 
215016621825SDmitry Karpeev   Output Parameters:
215120f4b53cSBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested)
215220f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
21530298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested)
21540298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested)
215520f4b53cSBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined)
215616621825SDmitry Karpeev 
215716621825SDmitry Karpeev   Level: intermediate
215816621825SDmitry Karpeev 
2159bb7acecfSBarry Smith   Note:
216016621825SDmitry Karpeev   The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with
2161bb7acecfSBarry Smith   `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`,
2162bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
216316621825SDmitry Karpeev 
2164bb7acecfSBarry Smith   Questions:
216520f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2166bb7acecfSBarry Smith 
21671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()`
216816621825SDmitry Karpeev @*/
2169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist)
2170d71ae5a4SJacob Faibussowitsch {
2171be081cd6SPeter Brune   DMSubDomainHookLink link;
2172be081cd6SPeter Brune   PetscInt            i, l;
217316621825SDmitry Karpeev 
217416621825SDmitry Karpeev   PetscFunctionBegin;
217516621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21769371c9d4SSatish Balay   if (n) {
21779371c9d4SSatish Balay     PetscValidIntPointer(n, 2);
21789371c9d4SSatish Balay     *n = 0;
21799371c9d4SSatish Balay   }
21809371c9d4SSatish Balay   if (namelist) {
21819371c9d4SSatish Balay     PetscValidPointer(namelist, 3);
21829371c9d4SSatish Balay     *namelist = NULL;
21839371c9d4SSatish Balay   }
21849371c9d4SSatish Balay   if (innerislist) {
21859371c9d4SSatish Balay     PetscValidPointer(innerislist, 4);
21869371c9d4SSatish Balay     *innerislist = NULL;
21879371c9d4SSatish Balay   }
21889371c9d4SSatish Balay   if (outerislist) {
21899371c9d4SSatish Balay     PetscValidPointer(outerislist, 5);
21909371c9d4SSatish Balay     *outerislist = NULL;
21919371c9d4SSatish Balay   }
21929371c9d4SSatish Balay   if (dmlist) {
21939371c9d4SSatish Balay     PetscValidPointer(dmlist, 6);
21949371c9d4SSatish Balay     *dmlist = NULL;
21959371c9d4SSatish Balay   }
2196f3f0edfdSDmitry Karpeev   /*
2197f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2198f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2199f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2200f3f0edfdSDmitry Karpeev    */
22017a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
220216621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2203dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
220414a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2205f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2206be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2207be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22089566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2209be081cd6SPeter Brune         }
2210648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2211e7c4fc90SDmitry Karpeev       }
221214a18fd3SPeter Brune     }
2213bb7acecfSBarry Smith     if (n) *n = l;
221414a18fd3SPeter Brune   }
22153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2216e30e807fSPeter Brune }
2217e30e807fSPeter Brune 
2218e30e807fSPeter Brune /*@C
2219e30e807fSPeter Brune   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector
2220e30e807fSPeter Brune 
222120f4b53cSBarry Smith   Not Collective
2222e30e807fSPeter Brune 
2223e30e807fSPeter Brune   Input Parameters:
2224bb7acecfSBarry Smith + dm - the `DM` object
2225e30e807fSPeter Brune . n  - the number of subdomain scatters
2226e30e807fSPeter Brune - subdms - the local subdomains
2227e30e807fSPeter Brune 
2228e30e807fSPeter Brune   Output Parameters:
22296b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2230e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2231e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2232e30e807fSPeter Brune 
223320f4b53cSBarry Smith   Level: developer
223420f4b53cSBarry Smith 
2235bb7acecfSBarry Smith   Note:
2236bb7acecfSBarry Smith     This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2237e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2238e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2239e30e807fSPeter Brune   solution and residual data.
2240e30e807fSPeter Brune 
2241bb7acecfSBarry Smith   Questions:
2242bb7acecfSBarry Smith   Can the subdms input be anything or are they exactly the `DM` obtained from `DMCreateDomainDecomposition()`?
2243bb7acecfSBarry Smith 
22441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2245e30e807fSPeter Brune @*/
2246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat)
2247d71ae5a4SJacob Faibussowitsch {
2248e30e807fSPeter Brune   PetscFunctionBegin;
2249e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2250e30e807fSPeter Brune   PetscValidPointer(subdms, 3);
2251dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
22523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2253e7c4fc90SDmitry Karpeev }
2254e7c4fc90SDmitry Karpeev 
225547c6ae99SBarry Smith /*@
2256bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
225747c6ae99SBarry Smith 
225820f4b53cSBarry Smith   Collective
225947c6ae99SBarry Smith 
2260d8d19677SJose E. Roman   Input Parameters:
2261bb7acecfSBarry Smith + dm   - the `DM` object
2262bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
226347c6ae99SBarry Smith 
226447c6ae99SBarry Smith   Output Parameter:
226520f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2266ae0a1c52SMatthew G Knepley 
226720f4b53cSBarry Smith   Options Database Key:
2268412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2269412e9a14SMatthew G. Knepley 
227047c6ae99SBarry Smith   Level: developer
227147c6ae99SBarry Smith 
227220f4b53cSBarry Smith   Note:
227320f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
227420f4b53cSBarry Smith 
22751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
227647c6ae99SBarry Smith @*/
2277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2278d71ae5a4SJacob Faibussowitsch {
2279c833c3b5SJed Brown   DMRefineHookLink link;
228047c6ae99SBarry Smith 
228147c6ae99SBarry Smith   PetscFunctionBegin;
2282732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2284dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
22854057135bSMatthew G Knepley   if (*dmf) {
228643842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
22878865f1eaSKarl Rupp 
22889566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
22898865f1eaSKarl Rupp 
2290644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
22910598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2292656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
22938865f1eaSKarl Rupp 
22949566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2295c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
22961baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2297c833c3b5SJed Brown     }
2298c833c3b5SJed Brown   }
22999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2301c833c3b5SJed Brown }
2302c833c3b5SJed Brown 
2303bb9467b5SJed Brown /*@C
2304c833c3b5SJed Brown    DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2305c833c3b5SJed Brown 
230620f4b53cSBarry Smith    Logically Collective; No Fortran Support
2307c833c3b5SJed Brown 
23084165533cSJose E. Roman    Input Parameters:
2309bb7acecfSBarry Smith +  coarse - `DM` on which to run a hook when interpolating to a finer level
2310bb7acecfSBarry Smith .  refinehook - function to run when setting up the finer level
2311f826b5fcSPierre Jolivet .  interphook - function to run to update data on finer levels (once per `SNESSolve()`)
231220f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2313c833c3b5SJed Brown 
231420f4b53cSBarry Smith    Calling sequence of `refinehook`:
231520f4b53cSBarry Smith $  PetscErrorCode refinehook(DM coarse, DM fine, void *ctx);
2316bb7acecfSBarry Smith +  coarse - coarse level `DM`
2317bb7acecfSBarry Smith .  fine - fine level `DM` to interpolate problem to
2318c833c3b5SJed Brown -  ctx - optional user-defined function context
2319c833c3b5SJed Brown 
232020f4b53cSBarry Smith    Calling sequence of `interphook`:
232120f4b53cSBarry Smith $  PetscErrorCode interphook(DM coarse, Mat interp, DM fine, void *ctx)
2322bb7acecfSBarry Smith +  coarse - coarse level `DM`
2323c833c3b5SJed Brown .  interp - matrix interpolating a coarse-level solution to the finer grid
2324bb7acecfSBarry Smith .  fine - fine level `DM` to update
2325c833c3b5SJed Brown -  ctx - optional user-defined function context
2326c833c3b5SJed Brown 
2327c833c3b5SJed Brown    Level: advanced
2328c833c3b5SJed Brown 
2329c833c3b5SJed Brown    Notes:
2330bb7acecfSBarry Smith    This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2331bb7acecfSBarry Smith    passed to fine grids while grid sequencing.
2332bb7acecfSBarry Smith 
2333bb7acecfSBarry Smith    The actual interpolation is done when `DMInterpolate()` is called.
2334c833c3b5SJed Brown 
2335c833c3b5SJed Brown    If this function is called multiple times, the hooks will be run in the order they are added.
2336c833c3b5SJed Brown 
23371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2338c833c3b5SJed Brown @*/
2339d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2340d71ae5a4SJacob Faibussowitsch {
2341c833c3b5SJed Brown   DMRefineHookLink link, *p;
2342c833c3b5SJed Brown 
2343c833c3b5SJed Brown   PetscFunctionBegin;
2344c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23453d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
23463ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
23473d8e3701SJed Brown   }
23489566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2349c833c3b5SJed Brown   link->refinehook = refinehook;
2350c833c3b5SJed Brown   link->interphook = interphook;
2351c833c3b5SJed Brown   link->ctx        = ctx;
23520298fd71SBarry Smith   link->next       = NULL;
2353c833c3b5SJed Brown   *p               = link;
23543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2355c833c3b5SJed Brown }
2356c833c3b5SJed Brown 
23573d8e3701SJed Brown /*@C
2358bb7acecfSBarry Smith    DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2359bb7acecfSBarry Smith     a nonlinear problem to a finer grid
23603d8e3701SJed Brown 
236120f4b53cSBarry Smith    Logically Collective; No Fortran Support
23623d8e3701SJed Brown 
23634165533cSJose E. Roman    Input Parameters:
2364bb7acecfSBarry Smith +  coarse - the `DM` on which to run a hook when restricting to a coarser level
2365bb7acecfSBarry Smith .  refinehook - function to run when setting up a finer level
2366bb7acecfSBarry Smith .  interphook - function to run to update data on finer levels
236720f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
23683d8e3701SJed Brown 
23693d8e3701SJed Brown    Level: advanced
23703d8e3701SJed Brown 
2371bb7acecfSBarry Smith    Note:
23723d8e3701SJed Brown    This function does nothing if the hook is not in the list.
23733d8e3701SJed Brown 
23741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
23753d8e3701SJed Brown @*/
2376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2377d71ae5a4SJacob Faibussowitsch {
23783d8e3701SJed Brown   DMRefineHookLink link, *p;
23793d8e3701SJed Brown 
23803d8e3701SJed Brown   PetscFunctionBegin;
23813d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
23823d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
23833d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
23843d8e3701SJed Brown       link = *p;
23853d8e3701SJed Brown       *p   = link->next;
23869566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
23873d8e3701SJed Brown       break;
23883d8e3701SJed Brown     }
23893d8e3701SJed Brown   }
23903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23913d8e3701SJed Brown }
23923d8e3701SJed Brown 
2393c833c3b5SJed Brown /*@
2394bb7acecfSBarry Smith    DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2395c833c3b5SJed Brown 
2396c833c3b5SJed Brown    Collective if any hooks are
2397c833c3b5SJed Brown 
23984165533cSJose E. Roman    Input Parameters:
2399bb7acecfSBarry Smith +  coarse - coarser `DM` to use as a base
2400bb7acecfSBarry Smith .  interp - interpolation matrix, apply using `MatInterpolate()`
2401bb7acecfSBarry Smith -  fine - finer `DM` to update
2402c833c3b5SJed Brown 
2403c833c3b5SJed Brown    Level: developer
2404c833c3b5SJed Brown 
2405bb7acecfSBarry Smith    Developer Note:
2406bb7acecfSBarry Smith    This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2407bb7acecfSBarry Smith    an API with consistent terminology.
2408bb7acecfSBarry Smith 
24091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2410c833c3b5SJed Brown @*/
2411d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2412d71ae5a4SJacob Faibussowitsch {
2413c833c3b5SJed Brown   DMRefineHookLink link;
2414c833c3b5SJed Brown 
2415c833c3b5SJed Brown   PetscFunctionBegin;
2416c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24171baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24184057135bSMatthew G Knepley   }
24193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
242047c6ae99SBarry Smith }
242147c6ae99SBarry Smith 
2422eb3f98d2SBarry Smith /*@
24231f3379b2SToby Isaac    DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24241f3379b2SToby Isaac 
242520f4b53cSBarry Smith    Collective
24261f3379b2SToby Isaac 
24274165533cSJose E. Roman    Input Parameters:
2428bb7acecfSBarry Smith +  coarse - coarse `DM`
2429bb7acecfSBarry Smith .  fine   - fine `DM`
2430bb7acecfSBarry Smith .  interp - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2431bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2432bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24331f3379b2SToby Isaac -  coarseSol - solution on the coarse mesh
24341f3379b2SToby Isaac 
24354165533cSJose E. Roman    Output Parameter:
24361f3379b2SToby Isaac .  fineSol - the interpolation of coarseSol to the fine mesh
24371f3379b2SToby Isaac 
24381f3379b2SToby Isaac    Level: developer
24391f3379b2SToby Isaac 
2440bb7acecfSBarry Smith    Note:
2441bb7acecfSBarry Smith    This function exists because the interpolation of a solution vector between meshes is not always a linear
24421f3379b2SToby Isaac    map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
24431f3379b2SToby Isaac    out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
24441f3379b2SToby Isaac    slope-limiting reconstruction.
24451f3379b2SToby Isaac 
2446bb7acecfSBarry Smith    Developer Note:
2447bb7acecfSBarry Smith    This doesn't just interpolate "solutions" so its API name is questionable.
2448bb7acecfSBarry Smith 
24491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
24501f3379b2SToby Isaac @*/
2451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2452d71ae5a4SJacob Faibussowitsch {
24531f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
24541f3379b2SToby Isaac 
24551f3379b2SToby Isaac   PetscFunctionBegin;
24561f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24571f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
24581f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
24591f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
24601f3379b2SToby Isaac 
24619566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
24621f3379b2SToby Isaac   if (interpsol) {
24639566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
24641f3379b2SToby Isaac   } else if (interp) {
24659566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
246698921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
24673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24681f3379b2SToby Isaac }
24691f3379b2SToby Isaac 
24701f3379b2SToby Isaac /*@
2471bb7acecfSBarry Smith     DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2472eb3f98d2SBarry Smith 
2473eb3f98d2SBarry Smith     Not Collective
2474eb3f98d2SBarry Smith 
2475eb3f98d2SBarry Smith     Input Parameter:
2476bb7acecfSBarry Smith .   dm - the `DM` object
2477eb3f98d2SBarry Smith 
2478eb3f98d2SBarry Smith     Output Parameter:
2479eb3f98d2SBarry Smith .   level - number of refinements
2480eb3f98d2SBarry Smith 
2481eb3f98d2SBarry Smith     Level: developer
2482eb3f98d2SBarry Smith 
2483bb7acecfSBarry Smith     Note:
2484bb7acecfSBarry Smith     This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2485bb7acecfSBarry Smith 
24861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2487eb3f98d2SBarry Smith @*/
2488d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2489d71ae5a4SJacob Faibussowitsch {
2490eb3f98d2SBarry Smith   PetscFunctionBegin;
2491eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2492eb3f98d2SBarry Smith   *level = dm->levelup;
24933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2494eb3f98d2SBarry Smith }
2495eb3f98d2SBarry Smith 
2496fef3a512SBarry Smith /*@
2497bb7acecfSBarry Smith     DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2498fef3a512SBarry Smith 
2499fef3a512SBarry Smith     Not Collective
2500fef3a512SBarry Smith 
2501d8d19677SJose E. Roman     Input Parameters:
2502bb7acecfSBarry Smith +   dm - the `DM` object
2503fef3a512SBarry Smith -   level - number of refinements
2504fef3a512SBarry Smith 
2505fef3a512SBarry Smith     Level: advanced
2506fef3a512SBarry Smith 
250795452b02SPatrick Sanan     Notes:
2508bb7acecfSBarry Smith     This value is used by `PCMG` to determine how many multigrid levels to use
2509fef3a512SBarry Smith 
2510bb7acecfSBarry Smith     The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2511bb7acecfSBarry Smith 
25121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2513fef3a512SBarry Smith @*/
2514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2515d71ae5a4SJacob Faibussowitsch {
2516fef3a512SBarry Smith   PetscFunctionBegin;
2517fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2518fef3a512SBarry Smith   dm->levelup = level;
25193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2520fef3a512SBarry Smith }
2521fef3a512SBarry Smith 
2522d410b0cfSMatthew G. Knepley /*@
2523bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2524d410b0cfSMatthew G. Knepley 
252520f4b53cSBarry Smith   Collective
2526d410b0cfSMatthew G. Knepley 
2527f1a722f8SMatthew G. Knepley   Input Parameters:
2528bb7acecfSBarry Smith + dm     - the `DM` object
2529d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2530d410b0cfSMatthew G. Knepley 
2531d410b0cfSMatthew G. Knepley   Output Parameter:
253220f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2533d410b0cfSMatthew G. Knepley 
2534d410b0cfSMatthew G. Knepley   Level: developer
2535d410b0cfSMatthew G. Knepley 
253620f4b53cSBarry Smith   Note:
253720f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
253820f4b53cSBarry Smith 
25391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2540d410b0cfSMatthew G. Knepley @*/
2541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2542d71ae5a4SJacob Faibussowitsch {
2543d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2544d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2545dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2546d410b0cfSMatthew G. Knepley   if (*dme) {
2547d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
25489566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2549d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
25509566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2551d410b0cfSMatthew G. Knepley   }
25523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2553d410b0cfSMatthew G. Knepley }
2554d410b0cfSMatthew G. Knepley 
2555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2556d71ae5a4SJacob Faibussowitsch {
2557ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2558ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2559ca3d3a14SMatthew G. Knepley   PetscValidPointer(tdm, 2);
2560ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
25613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2562ca3d3a14SMatthew G. Knepley }
2563ca3d3a14SMatthew G. Knepley 
2564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2565d71ae5a4SJacob Faibussowitsch {
2566ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2567ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2568ca3d3a14SMatthew G. Knepley   PetscValidPointer(tv, 2);
2569ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
25703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2571ca3d3a14SMatthew G. Knepley }
2572ca3d3a14SMatthew G. Knepley 
2573ca3d3a14SMatthew G. Knepley /*@
2574bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2575ca3d3a14SMatthew G. Knepley 
2576ca3d3a14SMatthew G. Knepley   Input Parameter:
257720f4b53cSBarry Smith . dm - The `DM`
2578ca3d3a14SMatthew G. Knepley 
2579ca3d3a14SMatthew G. Knepley   Output Parameter:
258020f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2581ca3d3a14SMatthew G. Knepley 
2582ca3d3a14SMatthew G. Knepley   Level: developer
2583ca3d3a14SMatthew G. Knepley 
25841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2585ca3d3a14SMatthew G. Knepley @*/
2586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2587d71ae5a4SJacob Faibussowitsch {
2588ca3d3a14SMatthew G. Knepley   Vec tv;
2589ca3d3a14SMatthew G. Knepley 
2590ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2591ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2592534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
25939566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2594ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
25953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2596ca3d3a14SMatthew G. Knepley }
2597ca3d3a14SMatthew G. Knepley 
2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2599d71ae5a4SJacob Faibussowitsch {
2600ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2601ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2602ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2603ca3d3a14SMatthew G. Knepley 
2604ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26059566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26069566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26079566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26089566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26099566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26109566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26119566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26129566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2613ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26149566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2615ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2616ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2617ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26189566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2619ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26209566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26219566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2622ca3d3a14SMatthew G. Knepley     }
2623ca3d3a14SMatthew G. Knepley   }
26249566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26259566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26269566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2627ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2628ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26299566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2630ca3d3a14SMatthew G. Knepley       if (dof) {
2631ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2632ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2633ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2634ca3d3a14SMatthew G. Knepley 
2635ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26369566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26379566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26389566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2639ca3d3a14SMatthew G. Knepley       }
2640ca3d3a14SMatthew G. Knepley     }
2641ca3d3a14SMatthew G. Knepley   }
26429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
26433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2644ca3d3a14SMatthew G. Knepley }
2645ca3d3a14SMatthew G. Knepley 
2646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2647d71ae5a4SJacob Faibussowitsch {
2648ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2649ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2650ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2651ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2652ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2653ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2654ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
26559566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2657ca3d3a14SMatthew G. Knepley }
2658ca3d3a14SMatthew G. Knepley 
2659bb9467b5SJed Brown /*@C
2660bb7acecfSBarry Smith    DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2661baf369e7SPeter Brune 
266220f4b53cSBarry Smith    Logically Collective
2663baf369e7SPeter Brune 
26644165533cSJose E. Roman    Input Parameters:
2665bb7acecfSBarry Smith +  dm - the `DM`
2666bb7acecfSBarry Smith .  beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2667bb7acecfSBarry Smith .  endhook - function to run after `DMGlobalToLocalEnd()` has completed
266820f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2669baf369e7SPeter Brune 
267020f4b53cSBarry Smith    Calling sequence of `beginhook`:
267120f4b53cSBarry Smith $  PetscErrorCode  beginhook(DM fine, VecScatter out, VecScatter in, DM coarse, void *ctx)
2672baf369e7SPeter Brune +  dm - global DM
2673baf369e7SPeter Brune .  g - global vector
2674baf369e7SPeter Brune .  mode - mode
2675baf369e7SPeter Brune .  l - local vector
2676baf369e7SPeter Brune -  ctx - optional user-defined function context
2677baf369e7SPeter Brune 
267820f4b53cSBarry Smith    Calling sequence of `endhook`:
267920f4b53cSBarry Smith $  PetscErrorCode  endhook(DM fine, VecScatter out, VecScatter in, DM coarse, void *ctx)
2680baf369e7SPeter Brune +  global - global DM
2681baf369e7SPeter Brune -  ctx - optional user-defined function context
2682baf369e7SPeter Brune 
2683baf369e7SPeter Brune    Level: advanced
2684baf369e7SPeter Brune 
2685bb7acecfSBarry Smith    Note:
2686bb7acecfSBarry Smith    The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2687bb7acecfSBarry Smith 
26881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2689baf369e7SPeter Brune @*/
2690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx)
2691d71ae5a4SJacob Faibussowitsch {
2692baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2693baf369e7SPeter Brune 
2694baf369e7SPeter Brune   PetscFunctionBegin;
2695baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2696baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
26979566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2698baf369e7SPeter Brune   link->beginhook = beginhook;
2699baf369e7SPeter Brune   link->endhook   = endhook;
2700baf369e7SPeter Brune   link->ctx       = ctx;
27010298fd71SBarry Smith   link->next      = NULL;
2702baf369e7SPeter Brune   *p              = link;
27033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2704baf369e7SPeter Brune }
2705baf369e7SPeter Brune 
2706d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2707d71ae5a4SJacob Faibussowitsch {
27084c274da1SToby Isaac   Mat          cMat;
270979769bd5SJed Brown   Vec          cVec, cBias;
27104c274da1SToby Isaac   PetscSection section, cSec;
27114c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27124c274da1SToby Isaac 
27134c274da1SToby Isaac   PetscFunctionBegin;
27144c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27159566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27164c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27175db9a05bSToby Isaac     PetscInt nRows;
27185db9a05bSToby Isaac 
27199566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27203ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27219566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27229566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27239566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27249566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27259566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27264c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27279566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27284c274da1SToby Isaac       if (dof) {
27294c274da1SToby Isaac         PetscScalar *vals;
27309566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27319566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27324c274da1SToby Isaac       }
27334c274da1SToby Isaac     }
27349566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27354c274da1SToby Isaac   }
27363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27374c274da1SToby Isaac }
27384c274da1SToby Isaac 
273947c6ae99SBarry Smith /*@
274001729b5cSPatrick Sanan     DMGlobalToLocal - update local vectors from global vector
274101729b5cSPatrick Sanan 
274220f4b53cSBarry Smith     Neighbor-wise Collective
274301729b5cSPatrick Sanan 
274401729b5cSPatrick Sanan     Input Parameters:
2745bb7acecfSBarry Smith +   dm - the `DM` object
274601729b5cSPatrick Sanan .   g - the global vector
2747bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
274801729b5cSPatrick Sanan -   l - the local vector
274901729b5cSPatrick Sanan 
275020f4b53cSBarry Smith     Level: beginner
275120f4b53cSBarry Smith 
275201729b5cSPatrick Sanan     Notes:
2753bb7acecfSBarry Smith     The communication involved in this update can be overlapped with computation by instead using
2754bb7acecfSBarry Smith     `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2755bb7acecfSBarry Smith 
2756bb7acecfSBarry Smith     `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
275701729b5cSPatrick Sanan 
27581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
2759bb7acecfSBarry Smith           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`,
2760bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
276101729b5cSPatrick Sanan @*/
2762d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2763d71ae5a4SJacob Faibussowitsch {
276401729b5cSPatrick Sanan   PetscFunctionBegin;
27659566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
27669566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
27673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
276801729b5cSPatrick Sanan }
276901729b5cSPatrick Sanan 
277001729b5cSPatrick Sanan /*@
277147c6ae99SBarry Smith     DMGlobalToLocalBegin - Begins updating local vectors from global vector
277247c6ae99SBarry Smith 
277320f4b53cSBarry Smith     Neighbor-wise Collective
277447c6ae99SBarry Smith 
277547c6ae99SBarry Smith     Input Parameters:
2776bb7acecfSBarry Smith +   dm - the `DM` object
277747c6ae99SBarry Smith .   g - the global vector
2778bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
277947c6ae99SBarry Smith -   l - the local vector
278047c6ae99SBarry Smith 
278101729b5cSPatrick Sanan     Level: intermediate
278247c6ae99SBarry Smith 
2783bb7acecfSBarry Smith     Notes:
2784bb7acecfSBarry Smith     The operation is completed with `DMGlobalToLocalEnd()`
2785bb7acecfSBarry Smith 
2786bb7acecfSBarry Smith     One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2787bb7acecfSBarry Smith 
2788bb7acecfSBarry Smith     `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2789bb7acecfSBarry Smith 
2790bb7acecfSBarry Smith     `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2791bb7acecfSBarry Smith 
27921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`
279347c6ae99SBarry Smith @*/
2794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2795d71ae5a4SJacob Faibussowitsch {
27967128ae9fSMatthew G Knepley   PetscSF                 sf;
2797baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
279847c6ae99SBarry Smith 
279947c6ae99SBarry Smith   PetscFunctionBegin;
2800171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2801baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28021baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2803baf369e7SPeter Brune   }
28049566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28057128ae9fSMatthew G Knepley   if (sf) {
2806ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2807ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2808d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28097128ae9fSMatthew G Knepley 
28107a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28119566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28129566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28139566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28159566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28167128ae9fSMatthew G Knepley   } else {
28179566063dSJacob Faibussowitsch     PetscCall((*dm->ops->globaltolocalbegin)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l));
28187128ae9fSMatthew G Knepley   }
28193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
282047c6ae99SBarry Smith }
282147c6ae99SBarry Smith 
282247c6ae99SBarry Smith /*@
282347c6ae99SBarry Smith     DMGlobalToLocalEnd - Ends updating local vectors from global vector
282447c6ae99SBarry Smith 
282520f4b53cSBarry Smith     Neighbor-wise Collective
282647c6ae99SBarry Smith 
282747c6ae99SBarry Smith     Input Parameters:
2828bb7acecfSBarry Smith +   dm - the `DM` object
282947c6ae99SBarry Smith .   g - the global vector
2830bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
283147c6ae99SBarry Smith -   l - the local vector
283247c6ae99SBarry Smith 
283301729b5cSPatrick Sanan     Level: intermediate
283447c6ae99SBarry Smith 
2835bb7acecfSBarry Smith     Note:
2836bb7acecfSBarry Smith     See `DMGlobalToLocalBegin()` for details.
2837bb7acecfSBarry Smith 
28381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`
283947c6ae99SBarry Smith @*/
2840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2841d71ae5a4SJacob Faibussowitsch {
28427128ae9fSMatthew G Knepley   PetscSF                 sf;
2843ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2844ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2845ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2846baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2847d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
284847c6ae99SBarry Smith 
284947c6ae99SBarry Smith   PetscFunctionBegin;
2850171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
28519566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28529566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
28537128ae9fSMatthew G Knepley   if (sf) {
28547a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28557128ae9fSMatthew G Knepley 
28569566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28579566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28589566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
28599566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28609566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28619566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
28627128ae9fSMatthew G Knepley   } else {
28639566063dSJacob Faibussowitsch     PetscCall((*dm->ops->globaltolocalend)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l));
28647128ae9fSMatthew G Knepley   }
28659566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2866baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28679566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2868baf369e7SPeter Brune   }
28693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
287047c6ae99SBarry Smith }
287147c6ae99SBarry Smith 
2872d4d07f1eSToby Isaac /*@C
2873d4d07f1eSToby Isaac    DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2874d4d07f1eSToby Isaac 
287520f4b53cSBarry Smith    Logically Collective
2876d4d07f1eSToby Isaac 
28774165533cSJose E. Roman    Input Parameters:
2878bb7acecfSBarry Smith +  dm - the `DM`
2879bb7acecfSBarry Smith .  beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2880bb7acecfSBarry Smith .  endhook - function to run after `DMLocalToGlobalEnd()` has completed
288120f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2882d4d07f1eSToby Isaac 
288320f4b53cSBarry Smith    Calling sequence of `beginhook`:
288420f4b53cSBarry Smith $  PetscErrorCode  beginhook(DM fine, Vec l, InsertMode mode, Vec g, void *ctx)
2885bb7acecfSBarry Smith +  dm - global `DM`
2886d4d07f1eSToby Isaac .  l - local vector
2887d4d07f1eSToby Isaac .  mode - mode
2888d4d07f1eSToby Isaac .  g - global vector
2889d4d07f1eSToby Isaac -  ctx - optional user-defined function context
2890d4d07f1eSToby Isaac 
289120f4b53cSBarry Smith    Calling sequence of `endhook`:
289220f4b53cSBarry Smith $  PetscErrorCode  endhook(DM fine, Vec l, InsertMode mode, Vec g, void *ctx)
2893bb7acecfSBarry Smith +  global - global `DM`
2894d4d07f1eSToby Isaac .  l - local vector
2895d4d07f1eSToby Isaac .  mode - mode
2896d4d07f1eSToby Isaac .  g - global vector
2897d4d07f1eSToby Isaac -  ctx - optional user-defined function context
2898d4d07f1eSToby Isaac 
2899d4d07f1eSToby Isaac    Level: advanced
2900d4d07f1eSToby Isaac 
29011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2902d4d07f1eSToby Isaac @*/
2903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx)
2904d71ae5a4SJacob Faibussowitsch {
2905d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2906d4d07f1eSToby Isaac 
2907d4d07f1eSToby Isaac   PetscFunctionBegin;
2908d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2909d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29109566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2911d4d07f1eSToby Isaac   link->beginhook = beginhook;
2912d4d07f1eSToby Isaac   link->endhook   = endhook;
2913d4d07f1eSToby Isaac   link->ctx       = ctx;
2914d4d07f1eSToby Isaac   link->next      = NULL;
2915d4d07f1eSToby Isaac   *p              = link;
29163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2917d4d07f1eSToby Isaac }
2918d4d07f1eSToby Isaac 
2919d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2920d71ae5a4SJacob Faibussowitsch {
29214c274da1SToby Isaac   Mat          cMat;
29224c274da1SToby Isaac   Vec          cVec;
29234c274da1SToby Isaac   PetscSection section, cSec;
29244c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
29254c274da1SToby Isaac 
29264c274da1SToby Isaac   PetscFunctionBegin;
29274c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29289566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29294c274da1SToby Isaac   if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) {
29305db9a05bSToby Isaac     PetscInt nRows;
29315db9a05bSToby Isaac 
29329566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29333ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29349566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29359566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29369566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29374c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29389566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
29394c274da1SToby Isaac       if (dof) {
29404c274da1SToby Isaac         PetscInt     d;
29414c274da1SToby Isaac         PetscScalar *vals;
29429566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
29439566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
29444c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
29454c274da1SToby Isaac          * we just extracted */
2946ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
29474c274da1SToby Isaac       }
29484c274da1SToby Isaac     }
29499566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
29509566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
29514c274da1SToby Isaac   }
29523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29534c274da1SToby Isaac }
295401729b5cSPatrick Sanan /*@
295501729b5cSPatrick Sanan     DMLocalToGlobal - updates global vectors from local vectors
295601729b5cSPatrick Sanan 
295720f4b53cSBarry Smith     Neighbor-wise Collective
295801729b5cSPatrick Sanan 
295901729b5cSPatrick Sanan     Input Parameters:
2960bb7acecfSBarry Smith +   dm - the `DM` object
296101729b5cSPatrick Sanan .   l - the local vector
2962bb7acecfSBarry Smith .   mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
296301729b5cSPatrick Sanan -   g - the global vector
296401729b5cSPatrick Sanan 
296520f4b53cSBarry Smith     Level: beginner
296620f4b53cSBarry Smith 
296701729b5cSPatrick Sanan     Notes:
296801729b5cSPatrick Sanan     The communication involved in this update can be overlapped with computation by using
2969bb7acecfSBarry Smith     `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
297001729b5cSPatrick Sanan 
2971bb7acecfSBarry Smith     In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
2972bb7acecfSBarry Smith 
2973bb7acecfSBarry Smith     `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
2974bb7acecfSBarry Smith 
2975bb7acecfSBarry Smith     Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
297601729b5cSPatrick Sanan 
29771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
297801729b5cSPatrick Sanan @*/
2979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
2980d71ae5a4SJacob Faibussowitsch {
298101729b5cSPatrick Sanan   PetscFunctionBegin;
29829566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
29839566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
29843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
298501729b5cSPatrick Sanan }
29864c274da1SToby Isaac 
298747c6ae99SBarry Smith /*@
298801729b5cSPatrick Sanan     DMLocalToGlobalBegin - begins updating global vectors from local vectors
29899a42bb27SBarry Smith 
299020f4b53cSBarry Smith     Neighbor-wise Collective
29919a42bb27SBarry Smith 
29929a42bb27SBarry Smith     Input Parameters:
2993bb7acecfSBarry Smith +   dm - the `DM` object
2994f6813fd5SJed Brown .   l - the local vector
2995aa624791SPierre Jolivet .   mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
29961eb28f2eSBarry Smith -   g - the global vector
29979a42bb27SBarry Smith 
299820f4b53cSBarry Smith     Level: intermediate
299920f4b53cSBarry Smith 
300095452b02SPatrick Sanan     Notes:
3001bb7acecfSBarry Smith     In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3002bb7acecfSBarry Smith 
3003bb7acecfSBarry Smith     `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3004bb7acecfSBarry Smith 
3005bb7acecfSBarry Smith     Use `DMLocalToGlobalEnd()` to complete the communication process.
3006bb7acecfSBarry Smith 
3007bb7acecfSBarry Smith     `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3008bb7acecfSBarry Smith 
3009bb7acecfSBarry Smith     `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30109a42bb27SBarry Smith 
30111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30129a42bb27SBarry Smith @*/
3013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3014d71ae5a4SJacob Faibussowitsch {
30157128ae9fSMatthew G Knepley   PetscSF                 sf;
301684330215SMatthew G. Knepley   PetscSection            s, gs;
3017d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3018ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3019ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3020ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3021fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3022d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30239a42bb27SBarry Smith 
30249a42bb27SBarry Smith   PetscFunctionBegin;
3025171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3026d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30271baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3028d4d07f1eSToby Isaac   }
30299566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30309566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30327128ae9fSMatthew G Knepley   switch (mode) {
30337128ae9fSMatthew G Knepley   case INSERT_VALUES:
30347128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3035d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3036d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3037d71ae5a4SJacob Faibussowitsch     break;
30387128ae9fSMatthew G Knepley   case ADD_VALUES:
30397128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3040d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3041d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3042d71ae5a4SJacob Faibussowitsch     break;
3043d71ae5a4SJacob Faibussowitsch   default:
3044d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
30457128ae9fSMatthew G Knepley   }
3046ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
30479566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3048ca3d3a14SMatthew G. Knepley     if (transform) {
30499566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
30509566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
30519566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
30529566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3053fa88e482SJed Brown     } else if (isInsert) {
30549566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3055fa88e482SJed Brown     } else {
30569566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3057fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3058ca3d3a14SMatthew G. Knepley     }
3059fa88e482SJed Brown     if (s && isInsert) {
30609566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3061fa88e482SJed Brown     } else {
30629566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3063fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3064fa88e482SJed Brown     }
3065ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
30669566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
306784330215SMatthew G. Knepley     } else if (s && isInsert) {
306884330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
306984330215SMatthew G. Knepley 
30709566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
30719566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
30729566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
307384330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3074b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
307584330215SMatthew G. Knepley 
30769566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
30779566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
30789566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
30799566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
30809566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
30819566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3082b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
308303442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
30847a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3085b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3086b3b16f48SMatthew G. Knepley         if (!gcdof) {
308784330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3088b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3089b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
309084330215SMatthew G. Knepley           const PetscInt *cdofs;
309184330215SMatthew G. Knepley           PetscInt        cind = 0;
309284330215SMatthew G. Knepley 
30939566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3094b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
30959371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
30969371c9d4SSatish Balay               ++cind;
30979371c9d4SSatish Balay               continue;
30989371c9d4SSatish Balay             }
3099b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
310084330215SMatthew G. Knepley           }
31017a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
310284330215SMatthew G. Knepley       }
3103ca3d3a14SMatthew G. Knepley     }
3104fa88e482SJed Brown     if (g_inplace) {
31059566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3106fa88e482SJed Brown     } else {
31079566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3108fa88e482SJed Brown     }
3109ca3d3a14SMatthew G. Knepley     if (transform) {
31109566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31119566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3112fa88e482SJed Brown     } else if (l_inplace) {
31139566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3114ca3d3a14SMatthew G. Knepley     } else {
31159566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3116ca3d3a14SMatthew G. Knepley     }
31177128ae9fSMatthew G Knepley   } else {
31189566063dSJacob Faibussowitsch     PetscCall((*dm->ops->localtoglobalbegin)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g));
31197128ae9fSMatthew G Knepley   }
31203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31219a42bb27SBarry Smith }
31229a42bb27SBarry Smith 
31239a42bb27SBarry Smith /*@
31249a42bb27SBarry Smith     DMLocalToGlobalEnd - updates global vectors from local vectors
312547c6ae99SBarry Smith 
312620f4b53cSBarry Smith     Neighbor-wise Collective
312747c6ae99SBarry Smith 
312847c6ae99SBarry Smith     Input Parameters:
3129bb7acecfSBarry Smith +   dm - the `DM` object
3130f6813fd5SJed Brown .   l - the local vector
3131bb7acecfSBarry Smith .   mode - `INSERT_VALUES` or `ADD_VALUES`
3132f6813fd5SJed Brown -   g - the global vector
313347c6ae99SBarry Smith 
313401729b5cSPatrick Sanan     Level: intermediate
313547c6ae99SBarry Smith 
3136bb7acecfSBarry Smith     Note:
3137bb7acecfSBarry Smith     See `DMLocalToGlobalBegin()` for full details
3138bb7acecfSBarry Smith 
31391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()`
314047c6ae99SBarry Smith @*/
3141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3142d71ae5a4SJacob Faibussowitsch {
31437128ae9fSMatthew G Knepley   PetscSF                 sf;
314484330215SMatthew G. Knepley   PetscSection            s;
3145d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3146ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
314747c6ae99SBarry Smith 
314847c6ae99SBarry Smith   PetscFunctionBegin;
3149171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
31509566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
31519566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
31527128ae9fSMatthew G Knepley   switch (mode) {
31537128ae9fSMatthew G Knepley   case INSERT_VALUES:
3154d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3155d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3156d71ae5a4SJacob Faibussowitsch     break;
31577128ae9fSMatthew G Knepley   case ADD_VALUES:
3158d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3159d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3160d71ae5a4SJacob Faibussowitsch     break;
3161d71ae5a4SJacob Faibussowitsch   default:
3162d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
31637128ae9fSMatthew G Knepley   }
316484330215SMatthew G. Knepley   if (sf && !isInsert) {
3165ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3166ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3167ca3d3a14SMatthew G. Knepley     Vec                tmpl;
316884330215SMatthew G. Knepley 
31699566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3170ca3d3a14SMatthew G. Knepley     if (transform) {
31719566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
31729566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3173ca3d3a14SMatthew G. Knepley     } else {
31749566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3175ca3d3a14SMatthew G. Knepley     }
31769566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
31779566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3178ca3d3a14SMatthew G. Knepley     if (transform) {
31799566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31809566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3181ca3d3a14SMatthew G. Knepley     } else {
31829566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3183ca3d3a14SMatthew G. Knepley     }
31849566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
318584330215SMatthew G. Knepley   } else if (s && isInsert) {
31867128ae9fSMatthew G Knepley   } else {
31879566063dSJacob Faibussowitsch     PetscCall((*dm->ops->localtoglobalend)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g));
31887128ae9fSMatthew G Knepley   }
3189d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
31909566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3191d4d07f1eSToby Isaac   }
31923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
319347c6ae99SBarry Smith }
319447c6ae99SBarry Smith 
3195f089877aSRichard Tran Mills /*@
3196bb7acecfSBarry Smith    DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include ghost points
3197bc0a1609SRichard Tran Mills    that contain irrelevant values) to another local vector where the ghost
3198bb7acecfSBarry Smith    points in the second are set correctly from values on other MPI ranks. Must be followed by `DMLocalToLocalEnd()`.
3199f089877aSRichard Tran Mills 
320020f4b53cSBarry Smith    Neighbor-wise Collective
3201f089877aSRichard Tran Mills 
3202f089877aSRichard Tran Mills    Input Parameters:
3203bb7acecfSBarry Smith +  dm - the `DM` object
3204bc0a1609SRichard Tran Mills .  g - the original local vector
3205bb7acecfSBarry Smith -  mode - one of `INSERT_VALUES` or `ADD_VALUES`
3206f089877aSRichard Tran Mills 
3207bc0a1609SRichard Tran Mills    Output Parameter:
3208bc0a1609SRichard Tran Mills .  l  - the local vector with correct ghost values
3209f089877aSRichard Tran Mills 
3210f089877aSRichard Tran Mills    Level: intermediate
3211f089877aSRichard Tran Mills 
32121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3213f089877aSRichard Tran Mills @*/
3214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3215d71ae5a4SJacob Faibussowitsch {
3216f089877aSRichard Tran Mills   PetscFunctionBegin;
3217f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32189f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32199f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32209f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3222f089877aSRichard Tran Mills }
3223f089877aSRichard Tran Mills 
3224f089877aSRichard Tran Mills /*@
3225bb7acecfSBarry Smith    DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3226bb7acecfSBarry Smith    points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3227f089877aSRichard Tran Mills 
322820f4b53cSBarry Smith    Neighbor-wise Collective
3229f089877aSRichard Tran Mills 
3230f089877aSRichard Tran Mills    Input Parameters:
3231bb7acecfSBarry Smith +  da - the `DM` object
3232bc0a1609SRichard Tran Mills .  g - the original local vector
3233bb7acecfSBarry Smith -  mode - one of `INSERT_VALUES` or `ADD_VALUES`
3234f089877aSRichard Tran Mills 
3235bc0a1609SRichard Tran Mills    Output Parameter:
3236bc0a1609SRichard Tran Mills .  l  - the local vector with correct ghost values
3237f089877aSRichard Tran Mills 
3238f089877aSRichard Tran Mills    Level: intermediate
3239f089877aSRichard Tran Mills 
32401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3241f089877aSRichard Tran Mills @*/
3242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3243d71ae5a4SJacob Faibussowitsch {
3244f089877aSRichard Tran Mills   PetscFunctionBegin;
3245f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32469f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32479f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32489f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3250f089877aSRichard Tran Mills }
3251f089877aSRichard Tran Mills 
325247c6ae99SBarry Smith /*@
3253bb7acecfSBarry Smith     DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
325447c6ae99SBarry Smith 
325520f4b53cSBarry Smith     Collective
325647c6ae99SBarry Smith 
3257d8d19677SJose E. Roman     Input Parameters:
3258bb7acecfSBarry Smith +   dm - the `DM` object
325920f4b53cSBarry Smith -   comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
326047c6ae99SBarry Smith 
326147c6ae99SBarry Smith     Output Parameter:
3262bb7acecfSBarry Smith .   dmc - the coarsened `DM`
326347c6ae99SBarry Smith 
326447c6ae99SBarry Smith     Level: developer
326547c6ae99SBarry Smith 
32661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
326747c6ae99SBarry Smith @*/
3268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3269d71ae5a4SJacob Faibussowitsch {
3270b17ce1afSJed Brown   DMCoarsenHookLink link;
327147c6ae99SBarry Smith 
327247c6ae99SBarry Smith   PetscFunctionBegin;
3273171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3275dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3276b9d85ea2SLisandro Dalcin   if (*dmc) {
3277a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
32789566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
327943842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
32809566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3281644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
32820598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3283656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
32849566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3285b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
32869566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3287b17ce1afSJed Brown     }
3288b9d85ea2SLisandro Dalcin   }
32899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
32907a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
32913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3292b17ce1afSJed Brown }
3293b17ce1afSJed Brown 
3294bb9467b5SJed Brown /*@C
3295b17ce1afSJed Brown    DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3296b17ce1afSJed Brown 
329720f4b53cSBarry Smith    Logically Collective; No Fortran Support
3298b17ce1afSJed Brown 
32994165533cSJose E. Roman    Input Parameters:
3300bb7acecfSBarry Smith +  fine - `DM` on which to run a hook when restricting to a coarser level
3301b17ce1afSJed Brown .  coarsenhook - function to run when setting up a coarser level
3302bb7acecfSBarry Smith .  restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
330320f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3304b17ce1afSJed Brown 
330520f4b53cSBarry Smith    Calling sequence of `coarsenhook`:
330620f4b53cSBarry Smith $  PetscErrorCode  coarsenhook(DM fine, DM coarse, void *ctx);
3307bb7acecfSBarry Smith +  fine - fine level `DM`
3308bb7acecfSBarry Smith .  coarse - coarse level `DM` to restrict problem to
3309b17ce1afSJed Brown -  ctx - optional user-defined function context
3310b17ce1afSJed Brown 
331120f4b53cSBarry Smith    Calling sequence of `restricthook`:
331220f4b53cSBarry Smith $  PetscErrorCode  restricthook(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx)
3313bb7acecfSBarry Smith +  fine - fine level `DM`
3314bb7acecfSBarry Smith .  mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3315c833c3b5SJed Brown .  rscale - scaling vector for restriction
3316c833c3b5SJed Brown .  inject - matrix restricting by injection
3317b17ce1afSJed Brown .  coarse - coarse level DM to update
3318b17ce1afSJed Brown -  ctx - optional user-defined function context
3319b17ce1afSJed Brown 
3320b17ce1afSJed Brown    Level: advanced
3321b17ce1afSJed Brown 
3322b17ce1afSJed Brown    Notes:
3323bb7acecfSBarry Smith    This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3324b17ce1afSJed Brown 
3325b17ce1afSJed Brown    If this function is called multiple times, the hooks will be run in the order they are added.
3326b17ce1afSJed Brown 
3327b17ce1afSJed Brown    In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3328bb7acecfSBarry Smith    extract the finest level information from its context (instead of from the `SNES`).
3329b17ce1afSJed Brown 
3330bb7acecfSBarry Smith    The hooks are automatically called by `DMRestrict()`
3331bb7acecfSBarry Smith 
33321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3333b17ce1afSJed Brown @*/
3334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3335d71ae5a4SJacob Faibussowitsch {
3336b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3337b17ce1afSJed Brown 
3338b17ce1afSJed Brown   PetscFunctionBegin;
3339b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
33401e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
33413ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
33421e3d8eccSJed Brown   }
33439566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3344b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3345b17ce1afSJed Brown   link->restricthook = restricthook;
3346b17ce1afSJed Brown   link->ctx          = ctx;
33470298fd71SBarry Smith   link->next         = NULL;
3348b17ce1afSJed Brown   *p                 = link;
33493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3350b17ce1afSJed Brown }
3351b17ce1afSJed Brown 
3352dc822a44SJed Brown /*@C
3353bb7acecfSBarry Smith    DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3354dc822a44SJed Brown 
335520f4b53cSBarry Smith    Logically Collective; No Fortran Support
3356dc822a44SJed Brown 
33574165533cSJose E. Roman    Input Parameters:
3358bb7acecfSBarry Smith +  fine - `DM` on which to run a hook when restricting to a coarser level
3359dc822a44SJed Brown .  coarsenhook - function to run when setting up a coarser level
3360bb7acecfSBarry Smith .  restricthook - function to run to update data on coarser levels
336120f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3362dc822a44SJed Brown 
3363dc822a44SJed Brown    Level: advanced
3364dc822a44SJed Brown 
3365bb7acecfSBarry Smith    Note:
3366dc822a44SJed Brown    This function does nothing if the hook is not in the list.
3367dc822a44SJed Brown 
33681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3369dc822a44SJed Brown @*/
3370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3371d71ae5a4SJacob Faibussowitsch {
3372dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3373dc822a44SJed Brown 
3374dc822a44SJed Brown   PetscFunctionBegin;
3375dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3376dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3377dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3378dc822a44SJed Brown       link = *p;
3379dc822a44SJed Brown       *p   = link->next;
33809566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3381dc822a44SJed Brown       break;
3382dc822a44SJed Brown     }
3383dc822a44SJed Brown   }
33843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3385dc822a44SJed Brown }
3386dc822a44SJed Brown 
3387b17ce1afSJed Brown /*@
3388bb7acecfSBarry Smith    DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3389b17ce1afSJed Brown 
3390b17ce1afSJed Brown    Collective if any hooks are
3391b17ce1afSJed Brown 
33924165533cSJose E. Roman    Input Parameters:
3393bb7acecfSBarry Smith +  fine - finer `DM` from which the data is obtained
3394bb7acecfSBarry Smith .  restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3395e91eccc2SStefano Zampini .  rscale - scaling vector for restriction
3396bb7acecfSBarry Smith .  inject - injection matrix, also use `MatRestrict()`
339720f4b53cSBarry Smith -  coarse - coarser `DM` to update
3398b17ce1afSJed Brown 
3399b17ce1afSJed Brown    Level: developer
3400b17ce1afSJed Brown 
3401bb7acecfSBarry Smith    Developer Note:
3402bb7acecfSBarry Smith    Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3403bb7acecfSBarry Smith 
34041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3405b17ce1afSJed Brown @*/
3406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3407d71ae5a4SJacob Faibussowitsch {
3408b17ce1afSJed Brown   DMCoarsenHookLink link;
3409b17ce1afSJed Brown 
3410b17ce1afSJed Brown   PetscFunctionBegin;
3411b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34121baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3413b17ce1afSJed Brown   }
34143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
341547c6ae99SBarry Smith }
341647c6ae99SBarry Smith 
3417bb9467b5SJed Brown /*@C
3418be081cd6SPeter Brune    DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid
34195dbd56e3SPeter Brune 
342020f4b53cSBarry Smith    Logically Collective; No Fortran Support
34215dbd56e3SPeter Brune 
34224165533cSJose E. Roman    Input Parameters:
3423bb7acecfSBarry Smith +  global - global `DM`
3424bb7acecfSBarry Smith .  ddhook - function to run to pass data to the decomposition `DM` upon its creation
34255dbd56e3SPeter Brune .  restricthook - function to run to update data on block solve (at the beginning of the block solve)
342620f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34275dbd56e3SPeter Brune 
342820f4b53cSBarry Smith    Calling sequence of `ddhook`:
342920f4b53cSBarry Smith $  PetscErrorCode ddhook(DM global, DM block, void *ctx)
3430bb7acecfSBarry Smith +  global - global `DM`
3431bb7acecfSBarry Smith .  block  - block `DM`
3432ec4806b8SPeter Brune -  ctx - optional user-defined function context
3433ec4806b8SPeter Brune 
343420f4b53cSBarry Smith    Calling sequence of `restricthook`:
343520f4b53cSBarry Smith $  PetscErrorCode restricthook(DM global, VecScatter out, VecScatter in, DM block, void *ctx)
3436bb7acecfSBarry Smith +  global - global `DM`
34375dbd56e3SPeter Brune .  out    - scatter to the outer (with ghost and overlap points) block vector
34385dbd56e3SPeter Brune .  in     - scatter to block vector values only owned locally
3439bb7acecfSBarry Smith .  block  - block `DM`
34405dbd56e3SPeter Brune -  ctx - optional user-defined function context
34415dbd56e3SPeter Brune 
34425dbd56e3SPeter Brune    Level: advanced
34435dbd56e3SPeter Brune 
34445dbd56e3SPeter Brune    Notes:
3445bb7acecfSBarry Smith    This function is only needed if auxiliary data needs to be set up on subdomain `DM`s.
34465dbd56e3SPeter Brune 
34475dbd56e3SPeter Brune    If this function is called multiple times, the hooks will be run in the order they are added.
34485dbd56e3SPeter Brune 
34495dbd56e3SPeter Brune    In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3450bb7acecfSBarry Smith    extract the global information from its context (instead of from the `SNES`).
34515dbd56e3SPeter Brune 
34521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
34535dbd56e3SPeter Brune @*/
3454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3455d71ae5a4SJacob Faibussowitsch {
3456be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
34575dbd56e3SPeter Brune 
34585dbd56e3SPeter Brune   PetscFunctionBegin;
34595dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3460b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
34613ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3462b3a6b972SJed Brown   }
34639566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
34645dbd56e3SPeter Brune   link->restricthook = restricthook;
3465be081cd6SPeter Brune   link->ddhook       = ddhook;
34665dbd56e3SPeter Brune   link->ctx          = ctx;
34670298fd71SBarry Smith   link->next         = NULL;
34685dbd56e3SPeter Brune   *p                 = link;
34693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34705dbd56e3SPeter Brune }
34715dbd56e3SPeter Brune 
3472b3a6b972SJed Brown /*@C
3473b3a6b972SJed Brown    DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid
3474b3a6b972SJed Brown 
347520f4b53cSBarry Smith    Logically Collective; No Fortran Support
3476b3a6b972SJed Brown 
34774165533cSJose E. Roman    Input Parameters:
3478bb7acecfSBarry Smith +  global - global `DM`
3479bb7acecfSBarry Smith .  ddhook - function to run to pass data to the decomposition `DM` upon its creation
3480b3a6b972SJed Brown .  restricthook - function to run to update data on block solve (at the beginning of the block solve)
348120f4b53cSBarry Smith -  ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3482b3a6b972SJed Brown 
3483b3a6b972SJed Brown    Level: advanced
3484b3a6b972SJed Brown 
34851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3486b3a6b972SJed Brown @*/
3487d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3488d71ae5a4SJacob Faibussowitsch {
3489b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3490b3a6b972SJed Brown 
3491b3a6b972SJed Brown   PetscFunctionBegin;
3492b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3493b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3494b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3495b3a6b972SJed Brown       link = *p;
3496b3a6b972SJed Brown       *p   = link->next;
34979566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3498b3a6b972SJed Brown       break;
3499b3a6b972SJed Brown     }
3500b3a6b972SJed Brown   }
35013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3502b3a6b972SJed Brown }
3503b3a6b972SJed Brown 
35045dbd56e3SPeter Brune /*@
3505bb7acecfSBarry Smith    DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()`
35065dbd56e3SPeter Brune 
35075dbd56e3SPeter Brune    Collective if any hooks are
35085dbd56e3SPeter Brune 
35094165533cSJose E. Roman    Input Parameters:
3510bb7acecfSBarry Smith +  fine - finer `DM` to use as a base
3511be081cd6SPeter Brune .  oscatter - scatter from domain global vector filling subdomain global vector with overlap
3512be081cd6SPeter Brune .  gscatter - scatter from domain global vector filling subdomain local vector with ghosts
3513bb7acecfSBarry Smith -  coarse - coarser `DM` to update
35145dbd56e3SPeter Brune 
35155dbd56e3SPeter Brune    Level: developer
35165dbd56e3SPeter Brune 
35171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`
35185dbd56e3SPeter Brune @*/
3519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3520d71ae5a4SJacob Faibussowitsch {
3521be081cd6SPeter Brune   DMSubDomainHookLink link;
35225dbd56e3SPeter Brune 
35235dbd56e3SPeter Brune   PetscFunctionBegin;
3524be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35251baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35265dbd56e3SPeter Brune   }
35273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35285dbd56e3SPeter Brune }
35295dbd56e3SPeter Brune 
35305fe1f584SPeter Brune /*@
3531bb7acecfSBarry Smith     DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
35325fe1f584SPeter Brune 
35335fe1f584SPeter Brune     Not Collective
35345fe1f584SPeter Brune 
35355fe1f584SPeter Brune     Input Parameter:
3536bb7acecfSBarry Smith .   dm - the `DM` object
35375fe1f584SPeter Brune 
35385fe1f584SPeter Brune     Output Parameter:
35396a7d9d85SPeter Brune .   level - number of coarsenings
35405fe1f584SPeter Brune 
35415fe1f584SPeter Brune     Level: developer
35425fe1f584SPeter Brune 
35431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35445fe1f584SPeter Brune @*/
3545d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3546d71ae5a4SJacob Faibussowitsch {
35475fe1f584SPeter Brune   PetscFunctionBegin;
35485fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3549b9d85ea2SLisandro Dalcin   PetscValidIntPointer(level, 2);
35505fe1f584SPeter Brune   *level = dm->leveldown;
35513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35525fe1f584SPeter Brune }
35535fe1f584SPeter Brune 
35549a64c4a8SMatthew G. Knepley /*@
3555bb7acecfSBarry Smith     DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
35569a64c4a8SMatthew G. Knepley 
355720f4b53cSBarry Smith     Collective
35589a64c4a8SMatthew G. Knepley 
35599a64c4a8SMatthew G. Knepley     Input Parameters:
3560bb7acecfSBarry Smith +   dm - the `DM` object
35619a64c4a8SMatthew G. Knepley -   level - number of coarsenings
35629a64c4a8SMatthew G. Knepley 
35639a64c4a8SMatthew G. Knepley     Level: developer
35649a64c4a8SMatthew G. Knepley 
3565bb7acecfSBarry Smith     Note:
3566bb7acecfSBarry Smith     This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3567bb7acecfSBarry Smith 
35681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarsenLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
35699a64c4a8SMatthew G. Knepley @*/
3570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3571d71ae5a4SJacob Faibussowitsch {
35729a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
35739a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35749a64c4a8SMatthew G. Knepley   dm->leveldown = level;
35753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35769a64c4a8SMatthew G. Knepley }
35779a64c4a8SMatthew G. Knepley 
357847c6ae99SBarry Smith /*@C
3579bb7acecfSBarry Smith     DMRefineHierarchy - Refines a `DM` object, all levels at once
358047c6ae99SBarry Smith 
358120f4b53cSBarry Smith     Collective
358247c6ae99SBarry Smith 
3583d8d19677SJose E. Roman     Input Parameters:
3584bb7acecfSBarry Smith +   dm - the `DM` object
358547c6ae99SBarry Smith -   nlevels - the number of levels of refinement
358647c6ae99SBarry Smith 
358747c6ae99SBarry Smith     Output Parameter:
3588bb7acecfSBarry Smith .   dmf - the refined `DM` hierarchy
358947c6ae99SBarry Smith 
359047c6ae99SBarry Smith     Level: developer
359147c6ae99SBarry Smith 
35921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
359347c6ae99SBarry Smith @*/
3594d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3595d71ae5a4SJacob Faibussowitsch {
359647c6ae99SBarry Smith   PetscFunctionBegin;
3597171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
35987a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
35993ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
3600b9d85ea2SLisandro Dalcin   PetscValidPointer(dmf, 3);
360147c6ae99SBarry Smith   if (dm->ops->refinehierarchy) {
3602dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
360347c6ae99SBarry Smith   } else if (dm->ops->refine) {
360447c6ae99SBarry Smith     PetscInt i;
360547c6ae99SBarry Smith 
36069566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
360748a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3608ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No RefineHierarchy for this DM yet");
36093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
361047c6ae99SBarry Smith }
361147c6ae99SBarry Smith 
361247c6ae99SBarry Smith /*@C
3613bb7acecfSBarry Smith     DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
361447c6ae99SBarry Smith 
361520f4b53cSBarry Smith     Collective
361647c6ae99SBarry Smith 
3617d8d19677SJose E. Roman     Input Parameters:
3618bb7acecfSBarry Smith +   dm - the `DM` object
361947c6ae99SBarry Smith -   nlevels - the number of levels of coarsening
362047c6ae99SBarry Smith 
362147c6ae99SBarry Smith     Output Parameter:
3622bb7acecfSBarry Smith .   dmc - the coarsened `DM` hierarchy
362347c6ae99SBarry Smith 
362447c6ae99SBarry Smith     Level: developer
362547c6ae99SBarry Smith 
36261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
362747c6ae99SBarry Smith @*/
3628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3629d71ae5a4SJacob Faibussowitsch {
363047c6ae99SBarry Smith   PetscFunctionBegin;
3631171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36327a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36333ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
363447c6ae99SBarry Smith   PetscValidPointer(dmc, 3);
363547c6ae99SBarry Smith   if (dm->ops->coarsenhierarchy) {
3636dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
363747c6ae99SBarry Smith   } else if (dm->ops->coarsen) {
363847c6ae99SBarry Smith     PetscInt i;
363947c6ae99SBarry Smith 
36409566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
364148a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3642ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No CoarsenHierarchy for this DM yet");
36433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
364447c6ae99SBarry Smith }
364547c6ae99SBarry Smith 
36461a266240SBarry Smith /*@C
3647bb7acecfSBarry Smith     DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
36481a266240SBarry Smith 
3649bb7acecfSBarry Smith     Logically Collective if the function is collective
36501a266240SBarry Smith 
36511a266240SBarry Smith     Input Parameters:
3652bb7acecfSBarry Smith +   dm - the `DM` object
36531a266240SBarry Smith -   destroy - the destroy function
36541a266240SBarry Smith 
36551a266240SBarry Smith     Level: intermediate
36561a266240SBarry Smith 
36571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
3658f07f9ceaSJed Brown @*/
3659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **))
3660d71ae5a4SJacob Faibussowitsch {
36611a266240SBarry Smith   PetscFunctionBegin;
3662171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36631a266240SBarry Smith   dm->ctxdestroy = destroy;
36643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36651a266240SBarry Smith }
36661a266240SBarry Smith 
3667b07ff414SBarry Smith /*@
3668bb7acecfSBarry Smith     DMSetApplicationContext - Set a user context into a `DM` object
366947c6ae99SBarry Smith 
367047c6ae99SBarry Smith     Not Collective
367147c6ae99SBarry Smith 
367247c6ae99SBarry Smith     Input Parameters:
3673bb7acecfSBarry Smith +   dm - the `DM` object
367447c6ae99SBarry Smith -   ctx - the user context
367547c6ae99SBarry Smith 
367647c6ae99SBarry Smith     Level: intermediate
367747c6ae99SBarry Smith 
3678bb7acecfSBarry Smith     Note:
367935cb6cd3SPierre Jolivet     A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3680bb7acecfSBarry Smith 
36811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
368247c6ae99SBarry Smith @*/
3683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3684d71ae5a4SJacob Faibussowitsch {
368547c6ae99SBarry Smith   PetscFunctionBegin;
3686171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
368747c6ae99SBarry Smith   dm->ctx = ctx;
36883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
368947c6ae99SBarry Smith }
369047c6ae99SBarry Smith 
369147c6ae99SBarry Smith /*@
3692bb7acecfSBarry Smith     DMGetApplicationContext - Gets a user context from a `DM` object
369347c6ae99SBarry Smith 
369447c6ae99SBarry Smith     Not Collective
369547c6ae99SBarry Smith 
369647c6ae99SBarry Smith     Input Parameter:
3697bb7acecfSBarry Smith .   dm - the `DM` object
369847c6ae99SBarry Smith 
369947c6ae99SBarry Smith     Output Parameter:
370047c6ae99SBarry Smith .   ctx - the user context
370147c6ae99SBarry Smith 
370247c6ae99SBarry Smith     Level: intermediate
370347c6ae99SBarry Smith 
3704bb7acecfSBarry Smith     Note:
370535cb6cd3SPierre Jolivet     A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3706bb7acecfSBarry Smith 
37071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
370847c6ae99SBarry Smith @*/
3709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx)
3710d71ae5a4SJacob Faibussowitsch {
371147c6ae99SBarry Smith   PetscFunctionBegin;
3712171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37131b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
37143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
371547c6ae99SBarry Smith }
371647c6ae99SBarry Smith 
371708da532bSDmitry Karpeev /*@C
3718bb7acecfSBarry Smith     DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
371908da532bSDmitry Karpeev 
372020f4b53cSBarry Smith     Logically Collective
372108da532bSDmitry Karpeev 
3722d8d19677SJose E. Roman     Input Parameters:
372308da532bSDmitry Karpeev +   dm - the DM object
372420f4b53cSBarry Smith -   f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set)
372508da532bSDmitry Karpeev 
372608da532bSDmitry Karpeev     Level: intermediate
372708da532bSDmitry Karpeev 
37281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3729db781477SPatrick Sanan          `DMSetJacobian()`
373008da532bSDmitry Karpeev @*/
3731d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3732d71ae5a4SJacob Faibussowitsch {
373308da532bSDmitry Karpeev   PetscFunctionBegin;
37345a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
373508da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
37363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
373708da532bSDmitry Karpeev }
373808da532bSDmitry Karpeev 
373908da532bSDmitry Karpeev /*@
3740bb7acecfSBarry Smith     DMHasVariableBounds - does the `DM` object have a variable bounds function?
374108da532bSDmitry Karpeev 
374208da532bSDmitry Karpeev     Not Collective
374308da532bSDmitry Karpeev 
374408da532bSDmitry Karpeev     Input Parameter:
3745bb7acecfSBarry Smith .   dm - the `DM` object to destroy
374608da532bSDmitry Karpeev 
374708da532bSDmitry Karpeev     Output Parameter:
3748bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the variable bounds function exists
374908da532bSDmitry Karpeev 
375008da532bSDmitry Karpeev     Level: developer
375108da532bSDmitry Karpeev 
37521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
375308da532bSDmitry Karpeev @*/
3754d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3755d71ae5a4SJacob Faibussowitsch {
375608da532bSDmitry Karpeev   PetscFunctionBegin;
37575a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3758534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
375908da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
37603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376108da532bSDmitry Karpeev }
376208da532bSDmitry Karpeev 
376308da532bSDmitry Karpeev /*@C
3764bb7acecfSBarry Smith     DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
376508da532bSDmitry Karpeev 
376620f4b53cSBarry Smith     Logically Collective
376708da532bSDmitry Karpeev 
3768f899ff85SJose E. Roman     Input Parameter:
3769bb7acecfSBarry Smith .   dm - the `DM` object
377008da532bSDmitry Karpeev 
377108da532bSDmitry Karpeev     Output parameters:
377208da532bSDmitry Karpeev +   xl - lower bound
377308da532bSDmitry Karpeev -   xu - upper bound
377408da532bSDmitry Karpeev 
3775907376e6SBarry Smith     Level: advanced
3776907376e6SBarry Smith 
377720f4b53cSBarry Smith     Note:
377895452b02SPatrick Sanan     This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
377908da532bSDmitry Karpeev 
37801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
378108da532bSDmitry Karpeev @*/
3782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3783d71ae5a4SJacob Faibussowitsch {
378408da532bSDmitry Karpeev   PetscFunctionBegin;
37855a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
378608da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
37875a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3788dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
37893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
379008da532bSDmitry Karpeev }
379108da532bSDmitry Karpeev 
3792b0ae01b7SPeter Brune /*@
3793bb7acecfSBarry Smith     DMHasColoring - does the `DM` object have a method of providing a coloring?
3794b0ae01b7SPeter Brune 
3795b0ae01b7SPeter Brune     Not Collective
3796b0ae01b7SPeter Brune 
3797b0ae01b7SPeter Brune     Input Parameter:
3798b0ae01b7SPeter Brune .   dm - the DM object
3799b0ae01b7SPeter Brune 
3800b0ae01b7SPeter Brune     Output Parameter:
3801bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3802b0ae01b7SPeter Brune 
3803b0ae01b7SPeter Brune     Level: developer
3804b0ae01b7SPeter Brune 
38051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3806b0ae01b7SPeter Brune @*/
3807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3808d71ae5a4SJacob Faibussowitsch {
3809b0ae01b7SPeter Brune   PetscFunctionBegin;
38105a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3811534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
3812b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
38133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3814b0ae01b7SPeter Brune }
3815b0ae01b7SPeter Brune 
38163ad4599aSBarry Smith /*@
3817bb7acecfSBarry Smith     DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
38183ad4599aSBarry Smith 
38193ad4599aSBarry Smith     Not Collective
38203ad4599aSBarry Smith 
38213ad4599aSBarry Smith     Input Parameter:
3822bb7acecfSBarry Smith .   dm - the `DM` object
38233ad4599aSBarry Smith 
38243ad4599aSBarry Smith     Output Parameter:
3825bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
38263ad4599aSBarry Smith 
38273ad4599aSBarry Smith     Level: developer
38283ad4599aSBarry Smith 
38291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
38303ad4599aSBarry Smith @*/
3831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3832d71ae5a4SJacob Faibussowitsch {
38333ad4599aSBarry Smith   PetscFunctionBegin;
38345a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3835534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
38363ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
38373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
38383ad4599aSBarry Smith }
38393ad4599aSBarry Smith 
3840a7058e45SLawrence Mitchell /*@
3841bb7acecfSBarry Smith     DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3842a7058e45SLawrence Mitchell 
3843a7058e45SLawrence Mitchell     Not Collective
3844a7058e45SLawrence Mitchell 
3845a7058e45SLawrence Mitchell     Input Parameter:
3846bb7acecfSBarry Smith .   dm - the `DM` object
3847a7058e45SLawrence Mitchell 
3848a7058e45SLawrence Mitchell     Output Parameter:
3849bb7acecfSBarry Smith .   flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3850a7058e45SLawrence Mitchell 
3851a7058e45SLawrence Mitchell     Level: developer
3852a7058e45SLawrence Mitchell 
38531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3854a7058e45SLawrence Mitchell @*/
3855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3856d71ae5a4SJacob Faibussowitsch {
3857a7058e45SLawrence Mitchell   PetscFunctionBegin;
38585a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3859534a8f05SLisandro Dalcin   PetscValidBoolPointer(flg, 2);
3860dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3861ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
38623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3863a7058e45SLawrence Mitchell }
3864a7058e45SLawrence Mitchell 
38650298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3866264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3867264ace61SBarry Smith 
3868264ace61SBarry Smith /*@C
3869bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3870264ace61SBarry Smith 
387120f4b53cSBarry Smith   Collective
3872264ace61SBarry Smith 
3873264ace61SBarry Smith   Input Parameters:
3874bb7acecfSBarry Smith + dm     - The `DM` object
3875bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3876264ace61SBarry Smith 
3877264ace61SBarry Smith   Options Database Key:
3878bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3879264ace61SBarry Smith 
3880264ace61SBarry Smith   Level: intermediate
3881264ace61SBarry Smith 
3882bb7acecfSBarry Smith   Note:
38830462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3884bb7acecfSBarry Smith 
38851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3886264ace61SBarry Smith @*/
3887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3888d71ae5a4SJacob Faibussowitsch {
3889264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3890264ace61SBarry Smith   PetscBool match;
3891264ace61SBarry Smith 
3892264ace61SBarry Smith   PetscFunctionBegin;
3893264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
38953ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3896264ace61SBarry Smith 
38979566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
38989566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
38997a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3900264ace61SBarry Smith 
3901dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39029566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
39039566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
39049566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
39053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3906264ace61SBarry Smith }
3907264ace61SBarry Smith 
3908264ace61SBarry Smith /*@C
3909bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
3910264ace61SBarry Smith 
3911264ace61SBarry Smith   Not Collective
3912264ace61SBarry Smith 
3913264ace61SBarry Smith   Input Parameter:
3914bb7acecfSBarry Smith . dm  - The `DM`
3915264ace61SBarry Smith 
3916264ace61SBarry Smith   Output Parameter:
3917bb7acecfSBarry Smith . type - The `DMType` name
3918264ace61SBarry Smith 
3919264ace61SBarry Smith   Level: intermediate
3920264ace61SBarry Smith 
39211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
3922264ace61SBarry Smith @*/
3923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
3924d71ae5a4SJacob Faibussowitsch {
3925264ace61SBarry Smith   PetscFunctionBegin;
3926264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3927c959eef4SJed Brown   PetscValidPointer(type, 2);
39289566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
3929264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
39303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3931264ace61SBarry Smith }
3932264ace61SBarry Smith 
393367a56275SMatthew G Knepley /*@C
3934bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
393567a56275SMatthew G Knepley 
393620f4b53cSBarry Smith   Collective
393767a56275SMatthew G Knepley 
393867a56275SMatthew G Knepley   Input Parameters:
3939bb7acecfSBarry Smith + dm - the `DM`
3940bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
394167a56275SMatthew G Knepley 
394267a56275SMatthew G Knepley   Output Parameter:
3943bb7acecfSBarry Smith . M - pointer to new `DM`
394467a56275SMatthew G Knepley 
394520f4b53cSBarry Smith   Level: intermediate
394620f4b53cSBarry Smith 
394767a56275SMatthew G Knepley   Notes:
3948bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
3949bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
3950bb7acecfSBarry Smith   of the input `DM`.
395167a56275SMatthew G Knepley 
39521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
395367a56275SMatthew G Knepley @*/
3954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
3955d71ae5a4SJacob Faibussowitsch {
395667a56275SMatthew G Knepley   DM        B;
395767a56275SMatthew G Knepley   char      convname[256];
3958c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
395967a56275SMatthew G Knepley 
396067a56275SMatthew G Knepley   PetscFunctionBegin;
396167a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
396267a56275SMatthew G Knepley   PetscValidType(dm, 1);
396367a56275SMatthew G Knepley   PetscValidPointer(M, 3);
39649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
39659566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
3966c067b6caSMatthew G. Knepley   if (sametype) {
3967c067b6caSMatthew G. Knepley     *M = dm;
39689566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
39693ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
3970c067b6caSMatthew G. Knepley   } else {
39710298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
397267a56275SMatthew G Knepley 
397367a56275SMatthew G Knepley     /*
397467a56275SMatthew G Knepley        Order of precedence:
397567a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
397667a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
397767a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
397867a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
397967a56275SMatthew G Knepley        5) Use a really basic converter.
398067a56275SMatthew G Knepley     */
398167a56275SMatthew G Knepley 
398267a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
39839566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
39849566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
39859566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
39869566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
39879566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
39889566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
398967a56275SMatthew G Knepley     if (conv) goto foundconv;
399067a56275SMatthew G Knepley 
399167a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
39929566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
39939566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
39949566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
39959566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
39969566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
39979566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
39989566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
39999566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
400067a56275SMatthew G Knepley     if (conv) {
40019566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
400267a56275SMatthew G Knepley       goto foundconv;
400367a56275SMatthew G Knepley     }
400467a56275SMatthew G Knepley 
400567a56275SMatthew G Knepley #if 0
400667a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
400767a56275SMatthew G Knepley     conv = B->ops->convertfrom;
40089566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
400967a56275SMatthew G Knepley     if (conv) goto foundconv;
401067a56275SMatthew G Knepley 
401167a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
401267a56275SMatthew G Knepley     if (dm->ops->convert) {
401367a56275SMatthew G Knepley       conv = dm->ops->convert;
401467a56275SMatthew G Knepley     }
401567a56275SMatthew G Knepley     if (conv) goto foundconv;
401667a56275SMatthew G Knepley #endif
401767a56275SMatthew G Knepley 
401867a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
401998921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
402067a56275SMatthew G Knepley 
402167a56275SMatthew G Knepley   foundconv:
40229566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
40239566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
402412fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
402590b157c4SStefano Zampini     {
40264fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
40276858538eSMatthew G. Knepley 
40284fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
40294fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4030c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
40319566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
40329566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
40339566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
40349566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
403512fa691eSMatthew G. Knepley     }
40369566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
403767a56275SMatthew G Knepley   }
40389566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
40393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
404067a56275SMatthew G Knepley }
4041264ace61SBarry Smith 
4042264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/
4043264ace61SBarry Smith 
4044264ace61SBarry Smith /*@C
4045bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
40461c84c290SBarry Smith 
40471c84c290SBarry Smith   Not Collective
40481c84c290SBarry Smith 
40491c84c290SBarry Smith   Input Parameters:
405020f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
405120f4b53cSBarry Smith - function - The creation routine itself
405220f4b53cSBarry Smith 
405320f4b53cSBarry Smith   Level: advanced
40541c84c290SBarry Smith 
40551c84c290SBarry Smith   Notes:
405620f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
40571c84c290SBarry Smith 
40581c84c290SBarry Smith   Sample usage:
40591c84c290SBarry Smith .vb
4060bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
40611c84c290SBarry Smith .ve
40621c84c290SBarry Smith 
406320f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
40641c84c290SBarry Smith .vb
40651c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
40661c84c290SBarry Smith     DMSetType(DM,"my_da");
40671c84c290SBarry Smith .ve
40681c84c290SBarry Smith    or at runtime via the option
40691c84c290SBarry Smith .vb
40701c84c290SBarry Smith     -da_type my_da
40711c84c290SBarry Smith .ve
4072264ace61SBarry Smith 
40731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4074264ace61SBarry Smith @*/
4075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4076d71ae5a4SJacob Faibussowitsch {
4077264ace61SBarry Smith   PetscFunctionBegin;
40789566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
40799566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
40803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4081264ace61SBarry Smith }
4082264ace61SBarry Smith 
4083b859378eSBarry Smith /*@C
4084bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4085b859378eSBarry Smith 
408620f4b53cSBarry Smith   Collective
4087b859378eSBarry Smith 
4088b859378eSBarry Smith   Input Parameters:
4089bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4090bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4091bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4092bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4093b859378eSBarry Smith 
4094b859378eSBarry Smith    Level: intermediate
4095b859378eSBarry Smith 
4096b859378eSBarry Smith   Notes:
409755849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4098b859378eSBarry Smith 
4099bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4100bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4101bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4102cd7e8a5eSksagiyam 
41031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4104b859378eSBarry Smith @*/
4105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4106d71ae5a4SJacob Faibussowitsch {
41079331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4108b859378eSBarry Smith 
4109b859378eSBarry Smith   PetscFunctionBegin;
4110b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4111b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
41129566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
41139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
41149566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
41159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
41169331c7a4SMatthew G. Knepley   if (isbinary) {
41179331c7a4SMatthew G. Knepley     PetscInt classid;
41189331c7a4SMatthew G. Knepley     char     type[256];
4119b859378eSBarry Smith 
41209566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
41217a8be351SBarry Smith     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid);
41229566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
41239566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4124dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41259331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4126dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
41279331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
41289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
41293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4130b859378eSBarry Smith }
4131b859378eSBarry Smith 
41327da65231SMatthew G Knepley /******************************** FEM Support **********************************/
41337da65231SMatthew G Knepley 
4134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4135d71ae5a4SJacob Faibussowitsch {
41361d47ebbbSSatish Balay   PetscInt f;
41371b30c384SMatthew G Knepley 
41387da65231SMatthew G Knepley   PetscFunctionBegin;
413963a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
414048a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
41413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41427da65231SMatthew G Knepley }
41437da65231SMatthew G Knepley 
4144d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4145d71ae5a4SJacob Faibussowitsch {
41461b30c384SMatthew G Knepley   PetscInt f, g;
41477da65231SMatthew G Knepley 
41487da65231SMatthew G Knepley   PetscFunctionBegin;
414963a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
41501d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
41519566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
415248a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
41539566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
41547da65231SMatthew G Knepley   }
41553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41567da65231SMatthew G Knepley }
4157e7c4fc90SDmitry Karpeev 
4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4159d71ae5a4SJacob Faibussowitsch {
41600c5b8624SToby Isaac   PetscInt           localSize, bs;
41610c5b8624SToby Isaac   PetscMPIInt        size;
41620c5b8624SToby Isaac   Vec                x, xglob;
41630c5b8624SToby Isaac   const PetscScalar *xarray;
4164e759306cSMatthew G. Knepley 
4165e759306cSMatthew G. Knepley   PetscFunctionBegin;
41669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
41679566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
41689566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
41699566063dSJacob Faibussowitsch   PetscCall(VecChop(x, tol));
41709566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
41710c5b8624SToby Isaac   if (size > 1) {
41729566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
41739566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
41749566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
41759566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
41760c5b8624SToby Isaac   } else {
41770c5b8624SToby Isaac     xglob = x;
41780c5b8624SToby Isaac   }
41799566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
41800c5b8624SToby Isaac   if (size > 1) {
41819566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
41829566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
41830c5b8624SToby Isaac   }
41849566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
41853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4186e759306cSMatthew G. Knepley }
4187e759306cSMatthew G. Knepley 
418888ed4aceSMatthew G Knepley /*@
4189bb7acecfSBarry Smith   DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`.   This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12
4190061576a5SJed Brown 
4191061576a5SJed Brown   Input Parameter:
4192bb7acecfSBarry Smith . dm - The `DM`
4193061576a5SJed Brown 
4194061576a5SJed Brown   Output Parameter:
4195bb7acecfSBarry Smith . section - The `PetscSection`
4196061576a5SJed Brown 
419720f4b53cSBarry Smith   Options Database Key:
4198bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM`
4199061576a5SJed Brown 
4200061576a5SJed Brown   Level: advanced
4201061576a5SJed Brown 
4202061576a5SJed Brown   Notes:
4203bb7acecfSBarry Smith   Use `DMGetLocalSection()` in new code.
4204061576a5SJed Brown 
4205bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
4206061576a5SJed Brown 
42071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()`
4208061576a5SJed Brown @*/
4209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section)
4210d71ae5a4SJacob Faibussowitsch {
4211061576a5SJed Brown   PetscFunctionBegin;
42129566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, section));
42133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4214061576a5SJed Brown }
4215061576a5SJed Brown 
4216061576a5SJed Brown /*@
4217bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
421888ed4aceSMatthew G Knepley 
421988ed4aceSMatthew G Knepley   Input Parameter:
4220bb7acecfSBarry Smith . dm - The `DM`
422188ed4aceSMatthew G Knepley 
422288ed4aceSMatthew G Knepley   Output Parameter:
4223bb7acecfSBarry Smith . section - The `PetscSection`
422488ed4aceSMatthew G Knepley 
422520f4b53cSBarry Smith   Options Database Key:
4226bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4227e5893cccSMatthew G. Knepley 
422888ed4aceSMatthew G Knepley   Level: intermediate
422988ed4aceSMatthew G Knepley 
4230bb7acecfSBarry Smith   Note:
4231bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
423288ed4aceSMatthew G Knepley 
42331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
423488ed4aceSMatthew G Knepley @*/
4235d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4236d71ae5a4SJacob Faibussowitsch {
423788ed4aceSMatthew G Knepley   PetscFunctionBegin;
423888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
423988ed4aceSMatthew G Knepley   PetscValidPointer(section, 2);
42401bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4241e5e52638SMatthew G. Knepley     PetscInt d;
4242e5e52638SMatthew G. Knepley 
424345480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
424445480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
424545480ffeSMatthew G. Knepley       PetscViewer       viewer;
424645480ffeSMatthew G. Knepley       PetscViewerFormat format;
424745480ffeSMatthew G. Knepley       PetscBool         flg;
424845480ffeSMatthew G. Knepley 
42499566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
42509566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
425145480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
42529566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
42539566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
425445480ffeSMatthew G. Knepley       }
425545480ffeSMatthew G. Knepley       if (flg) {
42569566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
42579566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
42589566063dSJacob Faibussowitsch         PetscCall(PetscViewerDestroy(&viewer));
425945480ffeSMatthew G. Knepley       }
426045480ffeSMatthew G. Knepley     }
4261dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
42629566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
42632f0f8703SMatthew G. Knepley   }
42641bb6d2a8SBarry Smith   *section = dm->localSection;
42653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
426688ed4aceSMatthew G Knepley }
426788ed4aceSMatthew G Knepley 
426888ed4aceSMatthew G Knepley /*@
4269bb7acecfSBarry Smith   DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`.  This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12
4270061576a5SJed Brown 
4271061576a5SJed Brown   Input Parameters:
4272bb7acecfSBarry Smith + dm - The `DM`
4273bb7acecfSBarry Smith - section - The `PetscSection`
4274061576a5SJed Brown 
4275061576a5SJed Brown   Level: advanced
4276061576a5SJed Brown 
4277061576a5SJed Brown   Notes:
4278bb7acecfSBarry Smith   Use `DMSetLocalSection()` in new code.
4279061576a5SJed Brown 
4280bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4281061576a5SJed Brown 
42821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()`
4283061576a5SJed Brown @*/
4284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section)
4285d71ae5a4SJacob Faibussowitsch {
4286061576a5SJed Brown   PetscFunctionBegin;
42879566063dSJacob Faibussowitsch   PetscCall(DMSetLocalSection(dm, section));
42883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4289061576a5SJed Brown }
4290061576a5SJed Brown 
4291061576a5SJed Brown /*@
4292bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
429388ed4aceSMatthew G Knepley 
429488ed4aceSMatthew G Knepley   Input Parameters:
4295bb7acecfSBarry Smith + dm - The `DM`
4296bb7acecfSBarry Smith - section - The `PetscSection`
429788ed4aceSMatthew G Knepley 
429888ed4aceSMatthew G Knepley   Level: intermediate
429988ed4aceSMatthew G Knepley 
4300bb7acecfSBarry Smith   Note:
4301bb7acecfSBarry Smith   Any existing Section will be destroyed
430288ed4aceSMatthew G Knepley 
43031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
430488ed4aceSMatthew G Knepley @*/
4305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4306d71ae5a4SJacob Faibussowitsch {
4307c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4308af122d2aSMatthew G Knepley   PetscInt f;
430988ed4aceSMatthew G Knepley 
431088ed4aceSMatthew G Knepley   PetscFunctionBegin;
431188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4312b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43139566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43149566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43151bb6d2a8SBarry Smith   dm->localSection = section;
43169566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4317af122d2aSMatthew G Knepley   if (numFields) {
43189566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4319af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43200f21e855SMatthew G. Knepley       PetscObject disc;
4321af122d2aSMatthew G Knepley       const char *name;
4322af122d2aSMatthew G Knepley 
43239566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43249566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43259566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4326af122d2aSMatthew G Knepley     }
4327af122d2aSMatthew G Knepley   }
4328e87a4003SBarry Smith   /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */
43299566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
43303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
433188ed4aceSMatthew G Knepley }
433288ed4aceSMatthew G Knepley 
43339435951eSToby Isaac /*@
4334bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
43359435951eSToby Isaac 
433620f4b53cSBarry Smith   not Collective
4337e228b242SToby Isaac 
43389435951eSToby Isaac   Input Parameter:
4339bb7acecfSBarry Smith . dm - The `DM`
43409435951eSToby Isaac 
4341d8d19677SJose E. Roman   Output Parameters:
434220f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
434320f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
434479769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs
43459435951eSToby Isaac 
43469435951eSToby Isaac   Level: advanced
43479435951eSToby Isaac 
4348bb7acecfSBarry Smith   Note:
4349bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
43509435951eSToby Isaac 
43511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
43529435951eSToby Isaac @*/
4353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4354d71ae5a4SJacob Faibussowitsch {
43559435951eSToby Isaac   PetscFunctionBegin;
43569435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4357dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
43583b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
43593b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
436079769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
43613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43629435951eSToby Isaac }
43639435951eSToby Isaac 
43649435951eSToby Isaac /*@
4365bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
43669435951eSToby Isaac 
436720f4b53cSBarry Smith   Collective
4368e228b242SToby Isaac 
43699435951eSToby Isaac   Input Parameters:
4370bb7acecfSBarry Smith + dm - The `DM`
4371bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
437220f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
437320f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
43749435951eSToby Isaac 
43759435951eSToby Isaac   Level: advanced
43769435951eSToby Isaac 
437720f4b53cSBarry Smith   Notes:
437820f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
437920f4b53cSBarry Smith 
438020f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
438120f4b53cSBarry Smith 
4382bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
43839435951eSToby Isaac 
43841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
43859435951eSToby Isaac @*/
4386d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4387d71ae5a4SJacob Faibussowitsch {
4388e228b242SToby Isaac   PetscMPIInt result;
43899435951eSToby Isaac 
43909435951eSToby Isaac   PetscFunctionBegin;
43919435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4392e228b242SToby Isaac   if (section) {
4393e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
43957a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4396e228b242SToby Isaac   }
4397e228b242SToby Isaac   if (mat) {
4398e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
43999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44007a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4401e228b242SToby Isaac   }
440279769bd5SJed Brown   if (bias) {
440379769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
44049566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
440579769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
440679769bd5SJed Brown   }
44079566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
44089566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
44093b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
44109566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
44119566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
44123b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
44139566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
44149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
441579769bd5SJed Brown   dm->defaultConstraint.bias = bias;
44163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44179435951eSToby Isaac }
44189435951eSToby Isaac 
4419497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4420507e4973SMatthew G. Knepley /*
4421bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4422507e4973SMatthew G. Knepley 
4423507e4973SMatthew G. Knepley   Input Parameters:
4424bb7acecfSBarry Smith + dm - The `DM`
4425bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4426bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4427507e4973SMatthew G. Knepley 
4428507e4973SMatthew G. Knepley   Level: intermediate
4429507e4973SMatthew G. Knepley 
44301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4431507e4973SMatthew G. Knepley */
4432d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4433d71ae5a4SJacob Faibussowitsch {
4434507e4973SMatthew G. Knepley   MPI_Comm        comm;
4435507e4973SMatthew G. Knepley   PetscLayout     layout;
4436507e4973SMatthew G. Knepley   const PetscInt *ranges;
4437507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4438507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4439507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4440507e4973SMatthew G. Knepley 
4441507e4973SMatthew G. Knepley   PetscFunctionBegin;
44429566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4443507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
44449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
44459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
44469566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
44479566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
44489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
44499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
44509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
44519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
44529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4453507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4454f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4455507e4973SMatthew G. Knepley 
44569566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
44579566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
44589566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
44599566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
44609566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
44619566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4462507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
44639371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
44649371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
44659371c9d4SSatish Balay       valid = PETSC_FALSE;
44669371c9d4SSatish Balay     }
44679371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
44689371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
44699371c9d4SSatish Balay       valid = PETSC_FALSE;
44709371c9d4SSatish Balay     }
4471507e4973SMatthew G. Knepley     if (gdof < 0) {
4472507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4473507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4474507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4475507e4973SMatthew G. Knepley 
44769566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4477507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
44789371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
44799371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
44809371c9d4SSatish Balay           valid = PETSC_FALSE;
44819371c9d4SSatish Balay           break;
44829371c9d4SSatish Balay         }
4483507e4973SMatthew G. Knepley       }
4484507e4973SMatthew G. Knepley     }
4485507e4973SMatthew G. Knepley   }
44869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
44879566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
44881c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4489507e4973SMatthew G. Knepley   if (!gvalid) {
44909566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4491507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4492507e4973SMatthew G. Knepley   }
44933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4494507e4973SMatthew G. Knepley }
4495f741bcd2SMatthew G. Knepley #endif
4496507e4973SMatthew G. Knepley 
44975f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
44986725e60dSJed Brown {
44996725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45006725e60dSJed Brown   PetscFunctionBegin;
45016725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45026725e60dSJed Brown   PetscValidPointer(sf, 2);
45035f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
45046725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
45056725e60dSJed Brown   else *sf = dm->sf;
45063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45076725e60dSJed Brown }
45086725e60dSJed Brown 
450988ed4aceSMatthew G Knepley /*@
4510bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
451188ed4aceSMatthew G Knepley 
451220f4b53cSBarry Smith   Collective
45138b1ab98fSJed Brown 
451488ed4aceSMatthew G Knepley   Input Parameter:
4515bb7acecfSBarry Smith . dm - The `DM`
451688ed4aceSMatthew G Knepley 
451788ed4aceSMatthew G Knepley   Output Parameter:
4518bb7acecfSBarry Smith . section - The `PetscSection`
451988ed4aceSMatthew G Knepley 
452088ed4aceSMatthew G Knepley   Level: intermediate
452188ed4aceSMatthew G Knepley 
4522bb7acecfSBarry Smith   Note:
4523bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
452488ed4aceSMatthew G Knepley 
45251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
452688ed4aceSMatthew G Knepley @*/
4527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4528d71ae5a4SJacob Faibussowitsch {
452988ed4aceSMatthew G Knepley   PetscFunctionBegin;
453088ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
453188ed4aceSMatthew G Knepley   PetscValidPointer(section, 2);
45321bb6d2a8SBarry Smith   if (!dm->globalSection) {
4533fd59a867SMatthew G. Knepley     PetscSection s;
45346725e60dSJed Brown     PetscSF      sf;
4535fd59a867SMatthew G. Knepley 
45369566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
45377a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
45387a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
45395f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
45406725e60dSJed Brown     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
45419566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
45429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
45439566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
454488ed4aceSMatthew G Knepley   }
45451bb6d2a8SBarry Smith   *section = dm->globalSection;
45463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
454788ed4aceSMatthew G Knepley }
454888ed4aceSMatthew G Knepley 
4549b21d0597SMatthew G Knepley /*@
4550bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4551b21d0597SMatthew G Knepley 
4552b21d0597SMatthew G Knepley   Input Parameters:
4553bb7acecfSBarry Smith + dm - The `DM`
45542fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4555b21d0597SMatthew G Knepley 
4556b21d0597SMatthew G Knepley   Level: intermediate
4557b21d0597SMatthew G Knepley 
4558bb7acecfSBarry Smith   Note:
4559bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4560b21d0597SMatthew G Knepley 
45611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4562b21d0597SMatthew G Knepley @*/
4563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4564d71ae5a4SJacob Faibussowitsch {
4565b21d0597SMatthew G Knepley   PetscFunctionBegin;
4566b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45675080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
45689566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
45699566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
45701bb6d2a8SBarry Smith   dm->globalSection = section;
4571497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
45729566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4573507e4973SMatthew G. Knepley #endif
45743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4575b21d0597SMatthew G Knepley }
4576b21d0597SMatthew G Knepley 
457788ed4aceSMatthew G Knepley /*@
4578bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4579bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
458088ed4aceSMatthew G Knepley 
458188ed4aceSMatthew G Knepley   Input Parameter:
4582bb7acecfSBarry Smith . dm - The `DM`
458388ed4aceSMatthew G Knepley 
458488ed4aceSMatthew G Knepley   Output Parameter:
4585bb7acecfSBarry Smith . sf - The `PetscSF`
458688ed4aceSMatthew G Knepley 
458788ed4aceSMatthew G Knepley   Level: intermediate
458888ed4aceSMatthew G Knepley 
4589bb7acecfSBarry Smith   Note:
4590bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
459188ed4aceSMatthew G Knepley 
45921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
459388ed4aceSMatthew G Knepley @*/
4594d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4595d71ae5a4SJacob Faibussowitsch {
459688ed4aceSMatthew G Knepley   PetscInt nroots;
459788ed4aceSMatthew G Knepley 
459888ed4aceSMatthew G Knepley   PetscFunctionBegin;
459988ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
460088ed4aceSMatthew G Knepley   PetscValidPointer(sf, 2);
460148a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
46029566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
460388ed4aceSMatthew G Knepley   if (nroots < 0) {
460488ed4aceSMatthew G Knepley     PetscSection section, gSection;
460588ed4aceSMatthew G Knepley 
46069566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
460731ea6d37SMatthew G Knepley     if (section) {
46089566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
46099566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
461031ea6d37SMatthew G Knepley     } else {
46110298fd71SBarry Smith       *sf = NULL;
46123ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
461331ea6d37SMatthew G Knepley     }
461488ed4aceSMatthew G Knepley   }
46151bb6d2a8SBarry Smith   *sf = dm->sectionSF;
46163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
461788ed4aceSMatthew G Knepley }
461888ed4aceSMatthew G Knepley 
461988ed4aceSMatthew G Knepley /*@
4620bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
462188ed4aceSMatthew G Knepley 
462288ed4aceSMatthew G Knepley   Input Parameters:
4623bb7acecfSBarry Smith + dm - The `DM`
4624bb7acecfSBarry Smith - sf - The `PetscSF`
462588ed4aceSMatthew G Knepley 
462688ed4aceSMatthew G Knepley   Level: intermediate
462788ed4aceSMatthew G Knepley 
4628bb7acecfSBarry Smith   Note:
4629bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
463088ed4aceSMatthew G Knepley 
46311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
463288ed4aceSMatthew G Knepley @*/
4633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4634d71ae5a4SJacob Faibussowitsch {
463588ed4aceSMatthew G Knepley   PetscFunctionBegin;
463688ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4637b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
46389566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
46399566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
46401bb6d2a8SBarry Smith   dm->sectionSF = sf;
46413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464288ed4aceSMatthew G Knepley }
464388ed4aceSMatthew G Knepley 
464488ed4aceSMatthew G Knepley /*@C
4645bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
464688ed4aceSMatthew G Knepley   describing the data layout.
464788ed4aceSMatthew G Knepley 
464888ed4aceSMatthew G Knepley   Input Parameters:
4649bb7acecfSBarry Smith + dm - The `DM`
4650bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4651bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
465288ed4aceSMatthew G Knepley 
46531bb6d2a8SBarry Smith   Level: developer
46541bb6d2a8SBarry Smith 
4655bb7acecfSBarry Smith   Note:
4656bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4657bb7acecfSBarry Smith 
4658bb7acecfSBarry Smith   Developer Note:
4659bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4660bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4661bb7acecfSBarry Smith   input and should just obtain them from the `DM`?
46621bb6d2a8SBarry Smith 
46631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
466488ed4aceSMatthew G Knepley @*/
4665d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4666d71ae5a4SJacob Faibussowitsch {
466788ed4aceSMatthew G Knepley   PetscFunctionBegin;
466888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46699566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
46703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
467188ed4aceSMatthew G Knepley }
4672af122d2aSMatthew G Knepley 
4673b21d0597SMatthew G Knepley /*@
4674bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4675bb7acecfSBarry Smith 
4676bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4677b21d0597SMatthew G Knepley 
4678b21d0597SMatthew G Knepley   Input Parameter:
4679bb7acecfSBarry Smith . dm - The `DM`
4680b21d0597SMatthew G Knepley 
4681b21d0597SMatthew G Knepley   Output Parameter:
4682bb7acecfSBarry Smith . sf - The `PetscSF`
4683b21d0597SMatthew G Knepley 
4684b21d0597SMatthew G Knepley   Level: intermediate
4685b21d0597SMatthew G Knepley 
4686bb7acecfSBarry Smith   Note:
4687bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4688b21d0597SMatthew G Knepley 
46891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4690b21d0597SMatthew G Knepley @*/
4691d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4692d71ae5a4SJacob Faibussowitsch {
4693b21d0597SMatthew G Knepley   PetscFunctionBegin;
4694b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4695b21d0597SMatthew G Knepley   PetscValidPointer(sf, 2);
4696b21d0597SMatthew G Knepley   *sf = dm->sf;
46973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4698b21d0597SMatthew G Knepley }
4699b21d0597SMatthew G Knepley 
4700057b4bcdSMatthew G Knepley /*@
4701bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4702bb7acecfSBarry Smith 
470320f4b53cSBarry Smith   Collective
4704057b4bcdSMatthew G Knepley 
4705057b4bcdSMatthew G Knepley   Input Parameters:
4706bb7acecfSBarry Smith + dm - The `DM`
4707bb7acecfSBarry Smith - sf - The `PetscSF`
4708057b4bcdSMatthew G Knepley 
4709057b4bcdSMatthew G Knepley   Level: intermediate
4710057b4bcdSMatthew G Knepley 
47111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4712057b4bcdSMatthew G Knepley @*/
4713d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4714d71ae5a4SJacob Faibussowitsch {
4715057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4716057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4717b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47189566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47199566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4720057b4bcdSMatthew G Knepley   dm->sf = sf;
47213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4722057b4bcdSMatthew G Knepley }
4723057b4bcdSMatthew G Knepley 
47244f37162bSMatthew G. Knepley /*@
4725bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
47264f37162bSMatthew G. Knepley 
47274f37162bSMatthew G. Knepley   Input Parameter:
4728bb7acecfSBarry Smith . dm - The `DM`
47294f37162bSMatthew G. Knepley 
47304f37162bSMatthew G. Knepley   Output Parameter:
4731bb7acecfSBarry Smith . sf - The `PetscSF`
47324f37162bSMatthew G. Knepley 
47334f37162bSMatthew G. Knepley   Level: intermediate
47344f37162bSMatthew G. Knepley 
4735bb7acecfSBarry Smith   Note:
4736bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
47374f37162bSMatthew G. Knepley 
47381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
47394f37162bSMatthew G. Knepley @*/
4740d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4741d71ae5a4SJacob Faibussowitsch {
47424f37162bSMatthew G. Knepley   PetscFunctionBegin;
47434f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47444f37162bSMatthew G. Knepley   PetscValidPointer(sf, 2);
47454f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
47463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47474f37162bSMatthew G. Knepley }
47484f37162bSMatthew G. Knepley 
47494f37162bSMatthew G. Knepley /*@
47504f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
47514f37162bSMatthew G. Knepley 
47524f37162bSMatthew G. Knepley   Input Parameters:
47534f37162bSMatthew G. Knepley + dm - The DM
47544f37162bSMatthew G. Knepley - sf - The PetscSF
47554f37162bSMatthew G. Knepley 
47564f37162bSMatthew G. Knepley   Level: intermediate
47574f37162bSMatthew G. Knepley 
47581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
47594f37162bSMatthew G. Knepley @*/
4760d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4761d71ae5a4SJacob Faibussowitsch {
47624f37162bSMatthew G. Knepley   PetscFunctionBegin;
47634f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47644f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47659566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47669566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
47674f37162bSMatthew G. Knepley   dm->sfNatural = sf;
47683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
47694f37162bSMatthew G. Knepley }
47704f37162bSMatthew G. Knepley 
4771d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4772d71ae5a4SJacob Faibussowitsch {
477334aa8a36SMatthew G. Knepley   PetscClassId id;
477434aa8a36SMatthew G. Knepley 
477534aa8a36SMatthew G. Knepley   PetscFunctionBegin;
47769566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
477734aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
47789566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
477934aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
47809566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
478117c1d62eSMatthew G. Knepley   } else {
47829566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
478334aa8a36SMatthew G. Knepley   }
47843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
478534aa8a36SMatthew G. Knepley }
478634aa8a36SMatthew G. Knepley 
4787d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4788d71ae5a4SJacob Faibussowitsch {
478944a7f3ddSMatthew G. Knepley   RegionField *tmpr;
479044a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
479144a7f3ddSMatthew G. Knepley 
479244a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
47933ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
47949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
479544a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
47969371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
47979371c9d4SSatish Balay     tmpr[f].disc        = NULL;
47989371c9d4SSatish Balay     tmpr[f].label       = NULL;
47999371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
48009371c9d4SSatish Balay   }
48019566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
480244a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
480344a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
48043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480544a7f3ddSMatthew G. Knepley }
480644a7f3ddSMatthew G. Knepley 
480744a7f3ddSMatthew G. Knepley /*@
480820f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
480944a7f3ddSMatthew G. Knepley 
481020f4b53cSBarry Smith   Logically Collective
481144a7f3ddSMatthew G. Knepley 
481244a7f3ddSMatthew G. Knepley   Input Parameter:
481320f4b53cSBarry Smith . dm - The `DM`
481444a7f3ddSMatthew G. Knepley 
481544a7f3ddSMatthew G. Knepley   Level: intermediate
481644a7f3ddSMatthew G. Knepley 
48171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
481844a7f3ddSMatthew G. Knepley @*/
4819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4820d71ae5a4SJacob Faibussowitsch {
482144a7f3ddSMatthew G. Knepley   PetscInt f;
482244a7f3ddSMatthew G. Knepley 
482344a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
482444a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
482544a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
48269566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
48279566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
482844a7f3ddSMatthew G. Knepley   }
48299566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
483044a7f3ddSMatthew G. Knepley   dm->fields = NULL;
483144a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
48323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483344a7f3ddSMatthew G. Knepley }
483444a7f3ddSMatthew G. Knepley 
4835689b5837SMatthew G. Knepley /*@
483620f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4837689b5837SMatthew G. Knepley 
483820f4b53cSBarry Smith   Not Collective
4839689b5837SMatthew G. Knepley 
4840689b5837SMatthew G. Knepley   Input Parameter:
484120f4b53cSBarry Smith . dm - The `DM`
4842689b5837SMatthew G. Knepley 
4843689b5837SMatthew G. Knepley   Output Parameter:
4844689b5837SMatthew G. Knepley . Nf - The number of fields
4845689b5837SMatthew G. Knepley 
4846689b5837SMatthew G. Knepley   Level: intermediate
4847689b5837SMatthew G. Knepley 
48481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4849689b5837SMatthew G. Knepley @*/
4850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4851d71ae5a4SJacob Faibussowitsch {
48520f21e855SMatthew G. Knepley   PetscFunctionBegin;
48530f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4854534a8f05SLisandro Dalcin   PetscValidIntPointer(numFields, 2);
485544a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
48563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4857af122d2aSMatthew G Knepley }
4858af122d2aSMatthew G Knepley 
4859689b5837SMatthew G. Knepley /*@
486020f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4861689b5837SMatthew G. Knepley 
486220f4b53cSBarry Smith   Logically Collective
4863689b5837SMatthew G. Knepley 
4864689b5837SMatthew G. Knepley   Input Parameters:
486520f4b53cSBarry Smith + dm - The `DM`
4866689b5837SMatthew G. Knepley - Nf - The number of fields
4867689b5837SMatthew G. Knepley 
4868689b5837SMatthew G. Knepley   Level: intermediate
4869689b5837SMatthew G. Knepley 
48701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4871689b5837SMatthew G. Knepley @*/
4872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4873d71ae5a4SJacob Faibussowitsch {
48740f21e855SMatthew G. Knepley   PetscInt Nf, f;
4875af122d2aSMatthew G Knepley 
4876af122d2aSMatthew G Knepley   PetscFunctionBegin;
4877af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48789566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
48790f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
48800f21e855SMatthew G. Knepley     PetscContainer obj;
48810f21e855SMatthew G. Knepley 
48829566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
48839566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
48849566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4885af122d2aSMatthew G Knepley   }
48863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4887af122d2aSMatthew G Knepley }
4888af122d2aSMatthew G Knepley 
4889c1929be8SMatthew G. Knepley /*@
4890bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4891c1929be8SMatthew G. Knepley 
489220f4b53cSBarry Smith   Not Collective
4893c1929be8SMatthew G. Knepley 
4894c1929be8SMatthew G. Knepley   Input Parameters:
4895bb7acecfSBarry Smith + dm - The `DM`
4896c1929be8SMatthew G. Knepley - f  - The field number
4897c1929be8SMatthew G. Knepley 
489844a7f3ddSMatthew G. Knepley   Output Parameters:
489920f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
490020f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed)
4901c1929be8SMatthew G. Knepley 
490244a7f3ddSMatthew G. Knepley   Level: intermediate
4903c1929be8SMatthew G. Knepley 
49041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
4905c1929be8SMatthew G. Knepley @*/
4906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
4907d71ae5a4SJacob Faibussowitsch {
4908af122d2aSMatthew G Knepley   PetscFunctionBegin;
4909af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4910bb7acecfSBarry Smith   PetscValidPointer(disc, 4);
49117a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
491244a7f3ddSMatthew G. Knepley   if (label) *label = dm->fields[f].label;
4913bb7acecfSBarry Smith   if (disc) *disc = dm->fields[f].disc;
49143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4915decb47aaSMatthew G. Knepley }
4916decb47aaSMatthew G. Knepley 
4917083401c6SMatthew G. Knepley /* Does not clear the DS */
4918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4919d71ae5a4SJacob Faibussowitsch {
4920083401c6SMatthew G. Knepley   PetscFunctionBegin;
49219566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
49229566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
49239566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
4924083401c6SMatthew G. Knepley   dm->fields[f].label = label;
4925bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
49269566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
4927bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
49283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4929083401c6SMatthew G. Knepley }
4930083401c6SMatthew G. Knepley 
493146560f82SMatthew G. Knepley /*@C
4932bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
4933bb7acecfSBarry Smith   the field numbering.
4934c1929be8SMatthew G. Knepley 
493520f4b53cSBarry Smith   Logically Collective
4936c1929be8SMatthew G. Knepley 
4937c1929be8SMatthew G. Knepley   Input Parameters:
4938bb7acecfSBarry Smith + dm    - The `DM`
4939c1929be8SMatthew G. Knepley . f     - The field number
494020f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
4941bb7acecfSBarry Smith - disc - The discretization object
4942c1929be8SMatthew G. Knepley 
494344a7f3ddSMatthew G. Knepley   Level: intermediate
4944c1929be8SMatthew G. Knepley 
49451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
4946c1929be8SMatthew G. Knepley @*/
4947d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
4948d71ae5a4SJacob Faibussowitsch {
4949decb47aaSMatthew G. Knepley   PetscFunctionBegin;
4950decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4951e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
4952bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
49537a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
4954bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
4955bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
49569566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
49573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
495844a7f3ddSMatthew G. Knepley }
495944a7f3ddSMatthew G. Knepley 
496046560f82SMatthew G. Knepley /*@C
4961bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
4962bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
496344a7f3ddSMatthew G. Knepley 
496420f4b53cSBarry Smith   Logically Collective
496544a7f3ddSMatthew G. Knepley 
496644a7f3ddSMatthew G. Knepley   Input Parameters:
4967bb7acecfSBarry Smith + dm    - The `DM`
496820f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
4969bb7acecfSBarry Smith - disc - The discretization object
497044a7f3ddSMatthew G. Knepley 
497144a7f3ddSMatthew G. Knepley   Level: intermediate
497244a7f3ddSMatthew G. Knepley 
4973bb7acecfSBarry Smith   Notes:
4974bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
4975bb7acecfSBarry Smith 
4976da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
4977bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
4978bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
4979bb7acecfSBarry Smith 
49801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
498144a7f3ddSMatthew G. Knepley @*/
4982d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
4983d71ae5a4SJacob Faibussowitsch {
498444a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
498544a7f3ddSMatthew G. Knepley 
498644a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
498744a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4988064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
4989bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
49909566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
499144a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
4992bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
49939566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
4994bb7acecfSBarry Smith   PetscCall(PetscObjectReference((PetscObject)disc));
4995bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
49969566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
49973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4998af122d2aSMatthew G Knepley }
49996636e97aSMatthew G Knepley 
5000e5e52638SMatthew G. Knepley /*@
5001e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5002e0b68406SMatthew Knepley 
500320f4b53cSBarry Smith   Logically Collective
5004e0b68406SMatthew Knepley 
5005e0b68406SMatthew Knepley   Input Parameters:
5006bb7acecfSBarry Smith + dm          - The `DM`
5007e0b68406SMatthew Knepley . f           - The field index
5008bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5009e0b68406SMatthew Knepley 
5010e0b68406SMatthew Knepley   Level: intermediate
5011e0b68406SMatthew Knepley 
50121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5013e0b68406SMatthew Knepley @*/
5014d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5015d71ae5a4SJacob Faibussowitsch {
5016e0b68406SMatthew Knepley   PetscFunctionBegin;
501763a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5018e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
50193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5020e0b68406SMatthew Knepley }
5021e0b68406SMatthew Knepley 
5022e0b68406SMatthew Knepley /*@
5023e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5024e0b68406SMatthew Knepley 
502520f4b53cSBarry Smith   Not Collective
5026e0b68406SMatthew Knepley 
5027e0b68406SMatthew Knepley   Input Parameters:
5028bb7acecfSBarry Smith + dm          - The `DM`
5029e0b68406SMatthew Knepley - f           - The field index
5030e0b68406SMatthew Knepley 
5031e0b68406SMatthew Knepley   Output Parameter:
5032e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5033e0b68406SMatthew Knepley 
5034e0b68406SMatthew Knepley   Level: intermediate
5035e0b68406SMatthew Knepley 
50361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5037e0b68406SMatthew Knepley @*/
5038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5039d71ae5a4SJacob Faibussowitsch {
5040e0b68406SMatthew Knepley   PetscFunctionBegin;
504163a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5042e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
50433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5044e0b68406SMatthew Knepley }
5045e0b68406SMatthew Knepley 
5046e0b68406SMatthew Knepley /*@
5047bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5048e5e52638SMatthew G. Knepley 
504920f4b53cSBarry Smith   Collective
5050e5e52638SMatthew G. Knepley 
5051e5e52638SMatthew G. Knepley   Input Parameter:
5052bb7acecfSBarry Smith . dm - The `DM`
5053e5e52638SMatthew G. Knepley 
5054e5e52638SMatthew G. Knepley   Output Parameter:
5055bb7acecfSBarry Smith . newdm - The `DM`
5056e5e52638SMatthew G. Knepley 
5057e5e52638SMatthew G. Knepley   Level: advanced
5058e5e52638SMatthew G. Knepley 
50591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5060e5e52638SMatthew G. Knepley @*/
5061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm)
5062d71ae5a4SJacob Faibussowitsch {
5063e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5064e5e52638SMatthew G. Knepley 
5065e5e52638SMatthew G. Knepley   PetscFunctionBegin;
50663ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
50679566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
50689566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5069e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5070e5e52638SMatthew G. Knepley     DMLabel     label;
5071e5e52638SMatthew G. Knepley     PetscObject field;
507234aa8a36SMatthew G. Knepley     PetscBool   useCone, useClosure;
5073e5e52638SMatthew G. Knepley 
50749566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
50759566063dSJacob Faibussowitsch     PetscCall(DMSetField(newdm, f, label, field));
50769566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
50779566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
507834aa8a36SMatthew G. Knepley   }
50793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
508034aa8a36SMatthew G. Knepley }
508134aa8a36SMatthew G. Knepley 
508234aa8a36SMatthew G. Knepley /*@
508334aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
508434aa8a36SMatthew G. Knepley 
508520f4b53cSBarry Smith   Not Collective
508634aa8a36SMatthew G. Knepley 
508734aa8a36SMatthew G. Knepley   Input Parameters:
508820f4b53cSBarry Smith + dm - The `DM` object
508920f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
509034aa8a36SMatthew G. Knepley 
5091d8d19677SJose E. Roman   Output Parameters:
509234aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
509334aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
509434aa8a36SMatthew G. Knepley 
509534aa8a36SMatthew G. Knepley   Level: developer
509634aa8a36SMatthew G. Knepley 
509720f4b53cSBarry Smith   Notes:
509820f4b53cSBarry Smith .vb
509920f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
510020f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
510120f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
510220f4b53cSBarry Smith .ve
510320f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
510420f4b53cSBarry Smith 
51051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
510634aa8a36SMatthew G. Knepley @*/
5107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5108d71ae5a4SJacob Faibussowitsch {
510934aa8a36SMatthew G. Knepley   PetscFunctionBegin;
511034aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5111534a8f05SLisandro Dalcin   if (useCone) PetscValidBoolPointer(useCone, 3);
5112534a8f05SLisandro Dalcin   if (useClosure) PetscValidBoolPointer(useClosure, 4);
511334aa8a36SMatthew G. Knepley   if (f < 0) {
511434aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
511534aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
511634aa8a36SMatthew G. Knepley   } else {
511734aa8a36SMatthew G. Knepley     PetscInt Nf;
511834aa8a36SMatthew G. Knepley 
51199566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
51207a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
512134aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
512234aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
512334aa8a36SMatthew G. Knepley   }
51243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
512534aa8a36SMatthew G. Knepley }
512634aa8a36SMatthew G. Knepley 
512734aa8a36SMatthew G. Knepley /*@
512834aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
512934aa8a36SMatthew G. Knepley 
513020f4b53cSBarry Smith   Not Collective
513134aa8a36SMatthew G. Knepley 
513234aa8a36SMatthew G. Knepley   Input Parameters:
513320f4b53cSBarry Smith + dm         - The `DM` object
513434aa8a36SMatthew G. Knepley . f          - The field number
513534aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
513634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
513734aa8a36SMatthew G. Knepley 
513834aa8a36SMatthew G. Knepley   Level: developer
513934aa8a36SMatthew G. Knepley 
514020f4b53cSBarry Smith   Notes:
514120f4b53cSBarry Smith .vb
514220f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
514320f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
514420f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
514520f4b53cSBarry Smith .ve
514620f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
514720f4b53cSBarry Smith 
51481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
514934aa8a36SMatthew G. Knepley @*/
5150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5151d71ae5a4SJacob Faibussowitsch {
515234aa8a36SMatthew G. Knepley   PetscFunctionBegin;
515334aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
515434aa8a36SMatthew G. Knepley   if (f < 0) {
515534aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
515634aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
515734aa8a36SMatthew G. Knepley   } else {
515834aa8a36SMatthew G. Knepley     PetscInt Nf;
515934aa8a36SMatthew G. Knepley 
51609566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
51617a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
516234aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
516334aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5164e5e52638SMatthew G. Knepley   }
51653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5166e5e52638SMatthew G. Knepley }
5167e5e52638SMatthew G. Knepley 
5168b0441da4SMatthew G. Knepley /*@
5169b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5170b0441da4SMatthew G. Knepley 
5171b0441da4SMatthew G. Knepley   Not collective
5172b0441da4SMatthew G. Knepley 
5173f899ff85SJose E. Roman   Input Parameter:
517420f4b53cSBarry Smith . dm - The `DM` object
5175b0441da4SMatthew G. Knepley 
5176d8d19677SJose E. Roman   Output Parameters:
5177b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5178b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5179b0441da4SMatthew G. Knepley 
5180b0441da4SMatthew G. Knepley   Level: developer
5181b0441da4SMatthew G. Knepley 
518220f4b53cSBarry Smith   Notes:
518320f4b53cSBarry Smith .vb
518420f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
518520f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
518620f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
518720f4b53cSBarry Smith .ve
518820f4b53cSBarry Smith 
51891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5190b0441da4SMatthew G. Knepley @*/
5191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5192d71ae5a4SJacob Faibussowitsch {
5193b0441da4SMatthew G. Knepley   PetscInt Nf;
5194b0441da4SMatthew G. Knepley 
5195b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5196b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5197064a246eSJacob Faibussowitsch   if (useCone) PetscValidBoolPointer(useCone, 2);
5198064a246eSJacob Faibussowitsch   if (useClosure) PetscValidBoolPointer(useClosure, 3);
51999566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5200b0441da4SMatthew G. Knepley   if (!Nf) {
52019566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5202b0441da4SMatthew G. Knepley   } else {
52039566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5204b0441da4SMatthew G. Knepley   }
52053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5206b0441da4SMatthew G. Knepley }
5207b0441da4SMatthew G. Knepley 
5208b0441da4SMatthew G. Knepley /*@
5209b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5210b0441da4SMatthew G. Knepley 
521120f4b53cSBarry Smith   Not Collective
5212b0441da4SMatthew G. Knepley 
5213b0441da4SMatthew G. Knepley   Input Parameters:
521420f4b53cSBarry Smith + dm         - The `DM` object
5215b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5216b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5217b0441da4SMatthew G. Knepley 
5218b0441da4SMatthew G. Knepley   Level: developer
5219b0441da4SMatthew G. Knepley 
522020f4b53cSBarry Smith   Notes:
522120f4b53cSBarry Smith .vb
522220f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
522320f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
522420f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
522520f4b53cSBarry Smith .ve
522620f4b53cSBarry Smith 
52271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5228b0441da4SMatthew G. Knepley @*/
5229d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5230d71ae5a4SJacob Faibussowitsch {
5231b0441da4SMatthew G. Knepley   PetscInt Nf;
5232b0441da4SMatthew G. Knepley 
5233b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5234b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52359566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5236b0441da4SMatthew G. Knepley   if (!Nf) {
52379566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5238b0441da4SMatthew G. Knepley   } else {
52399566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5240e5e52638SMatthew G. Knepley   }
52413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5242e5e52638SMatthew G. Knepley }
5243e5e52638SMatthew G. Knepley 
5244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5245d71ae5a4SJacob Faibussowitsch {
5246799db056SMatthew G. Knepley   DM           plex;
5247799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5248799db056SMatthew G. Knepley   const char **names;
5249799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5250799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5251799db056SMatthew G. Knepley   size_t       len;
5252799db056SMatthew G. Knepley   MPI_Comm     comm;
5253799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5254783e2ec8SMatthew G. Knepley 
5255783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5256799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5257799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5258799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5259799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5260799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5261799db056SMatthew G. Knepley     PetscDS  dsBC;
5262799db056SMatthew G. Knepley     PetscInt numBd;
5263799db056SMatthew G. Knepley 
526407218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5265799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5266799db056SMatthew G. Knepley     maxLabels += numBd;
5267799db056SMatthew G. Knepley   }
5268799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5269799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5270799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5271799db056SMatthew G. Knepley     PetscDS  dsBC;
5272799db056SMatthew G. Knepley     PetscInt numBd, bd;
5273799db056SMatthew G. Knepley 
527407218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5275799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5276799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5277799db056SMatthew G. Knepley       DMLabel      label;
5278799db056SMatthew G. Knepley       PetscInt     field;
5279799db056SMatthew G. Knepley       PetscObject  obj;
5280799db056SMatthew G. Knepley       PetscClassId id;
5281799db056SMatthew G. Knepley 
5282799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
52839566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
52849566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5285799db056SMatthew G. Knepley       if (!(id == PETSCFE_CLASSID) || !label) continue;
52869371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
52879371c9d4SSatish Balay         if (labels[l] == label) break;
5288799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5289783e2ec8SMatthew G. Knepley     }
5290799db056SMatthew G. Knepley   }
5291799db056SMatthew G. Knepley   /* Get label names */
5292799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5293799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
52949371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
52959371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
52969371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
52979371c9d4SSatish Balay   }
5298799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5299712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5300799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5301c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5302799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5303799db056SMatthew G. Knepley   /* Put all names on all processes */
5304799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5305799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5306799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5307799db056SMatthew G. Knepley   gNl = displs[size];
53089371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
53099371c9d4SSatish Balay     counts[p] *= gmaxLen;
53109371c9d4SSatish Balay     displs[p] *= gmaxLen;
53119371c9d4SSatish Balay   }
5312799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5313799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5314799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5315799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5316799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5317799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5318799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
53199371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
53209371c9d4SSatish Balay       if (glabels[m] == glabels[gl]) continue;
53219566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5322799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
53239566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5324799db056SMatthew G. Knepley     ++gl;
5325783e2ec8SMatthew G. Knepley   }
5326799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
53273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5328783e2ec8SMatthew G. Knepley }
5329783e2ec8SMatthew G. Knepley 
5330d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5331d71ae5a4SJacob Faibussowitsch {
5332e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5333e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5334e5e52638SMatthew G. Knepley 
5335e5e52638SMatthew G. Knepley   PetscFunctionBegin;
53363ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
53379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5338e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
53399371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
53409371c9d4SSatish Balay     tmpd[s].ds     = NULL;
53419371c9d4SSatish Balay     tmpd[s].label  = NULL;
53429371c9d4SSatish Balay     tmpd[s].fields = NULL;
53439371c9d4SSatish Balay   }
53449566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5345e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5346e5e52638SMatthew G. Knepley   dm->probs = tmpd;
53473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5348e5e52638SMatthew G. Knepley }
5349e5e52638SMatthew G. Knepley 
5350e5e52638SMatthew G. Knepley /*@
535120f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5352e5e52638SMatthew G. Knepley 
535320f4b53cSBarry Smith   Not Collective
5354e5e52638SMatthew G. Knepley 
5355e5e52638SMatthew G. Knepley   Input Parameter:
535620f4b53cSBarry Smith . dm - The `DM`
5357e5e52638SMatthew G. Knepley 
5358e5e52638SMatthew G. Knepley   Output Parameter:
535920f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5360e5e52638SMatthew G. Knepley 
5361e5e52638SMatthew G. Knepley   Level: intermediate
5362e5e52638SMatthew G. Knepley 
53631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5364e5e52638SMatthew G. Knepley @*/
5365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5366d71ae5a4SJacob Faibussowitsch {
5367e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5368e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5369534a8f05SLisandro Dalcin   PetscValidIntPointer(Nds, 2);
5370e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
53713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5372e5e52638SMatthew G. Knepley }
5373e5e52638SMatthew G. Knepley 
5374e5e52638SMatthew G. Knepley /*@
537520f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5376e5e52638SMatthew G. Knepley 
537720f4b53cSBarry Smith   Logically Collective
5378e5e52638SMatthew G. Knepley 
5379e5e52638SMatthew G. Knepley   Input Parameter:
538020f4b53cSBarry Smith . dm - The `DM`
5381e5e52638SMatthew G. Knepley 
5382e5e52638SMatthew G. Knepley   Level: intermediate
5383e5e52638SMatthew G. Knepley 
53841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5385e5e52638SMatthew G. Knepley @*/
5386d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5387d71ae5a4SJacob Faibussowitsch {
5388e5e52638SMatthew G. Knepley   PetscInt s;
5389e5e52638SMatthew G. Knepley 
5390e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5391e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5392e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
53939566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
539407218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
53959566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
53969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5397e5e52638SMatthew G. Knepley   }
53989566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5399e5e52638SMatthew G. Knepley   dm->probs = NULL;
5400e5e52638SMatthew G. Knepley   dm->Nds   = 0;
54013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5402e5e52638SMatthew G. Knepley }
5403e5e52638SMatthew G. Knepley 
5404e5e52638SMatthew G. Knepley /*@
540520f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5406e5e52638SMatthew G. Knepley 
540720f4b53cSBarry Smith   Not Collective
5408e5e52638SMatthew G. Knepley 
5409e5e52638SMatthew G. Knepley   Input Parameter:
541020f4b53cSBarry Smith . dm - The `DM`
5411e5e52638SMatthew G. Knepley 
5412e5e52638SMatthew G. Knepley   Output Parameter:
541307218a29SMatthew G. Knepley . ds - The default `PetscDS`
5414e5e52638SMatthew G. Knepley 
5415e5e52638SMatthew G. Knepley   Level: intermediate
5416e5e52638SMatthew G. Knepley 
54171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5418e5e52638SMatthew G. Knepley @*/
541907218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5420d71ae5a4SJacob Faibussowitsch {
5421e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5422e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
542307218a29SMatthew G. Knepley   PetscValidPointer(ds, 2);
542407218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
542507218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
54263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5427e5e52638SMatthew G. Knepley }
5428e5e52638SMatthew G. Knepley 
5429e5e52638SMatthew G. Knepley /*@
543020f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5431e5e52638SMatthew G. Knepley 
543220f4b53cSBarry Smith   Not Collective
5433e5e52638SMatthew G. Knepley 
5434e5e52638SMatthew G. Knepley   Input Parameters:
543520f4b53cSBarry Smith + dm    - The `DM`
543620f4b53cSBarry Smith - point - Cell for the `PetscDS`
5437e5e52638SMatthew G. Knepley 
543807218a29SMatthew G. Knepley   Output Parameters:
543907218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
544007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5441e5e52638SMatthew G. Knepley 
5442e5e52638SMatthew G. Knepley   Level: developer
5443e5e52638SMatthew G. Knepley 
54441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5445e5e52638SMatthew G. Knepley @*/
544607218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5447d71ae5a4SJacob Faibussowitsch {
544807218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5449e5e52638SMatthew G. Knepley   PetscInt s;
5450e5e52638SMatthew G. Knepley 
5451e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5452e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
545307218a29SMatthew G. Knepley   if (ds) PetscValidPointer(ds, 3);
545407218a29SMatthew G. Knepley   if (dsIn) PetscValidPointer(dsIn, 4);
545563a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
545607218a29SMatthew G. Knepley   if (ds) *ds = NULL;
545707218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5458e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5459e5e52638SMatthew G. Knepley     PetscInt val;
5460e5e52638SMatthew G. Knepley 
54619371c9d4SSatish Balay     if (!dm->probs[s].label) {
546207218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
54639371c9d4SSatish Balay     } else {
54649566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
54659371c9d4SSatish Balay       if (val >= 0) {
546607218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
546707218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
54689371c9d4SSatish Balay         break;
54699371c9d4SSatish Balay       }
5470e5e52638SMatthew G. Knepley     }
5471e5e52638SMatthew G. Knepley   }
547207218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
54733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5474e5e52638SMatthew G. Knepley }
5475e5e52638SMatthew G. Knepley 
5476e5e52638SMatthew G. Knepley /*@
547720f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5478e5e52638SMatthew G. Knepley 
547920f4b53cSBarry Smith   Not Collective
5480e5e52638SMatthew G. Knepley 
5481e5e52638SMatthew G. Knepley   Input Parameters:
548220f4b53cSBarry Smith + dm    - The `DM`
548320f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5484e5e52638SMatthew G. Knepley 
5485b3cf3223SMatthew G. Knepley   Output Parameters:
548620f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
548707218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
548807218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5489e5e52638SMatthew G. Knepley 
5490e5e52638SMatthew G. Knepley   Level: advanced
5491e5e52638SMatthew G. Knepley 
549220f4b53cSBarry Smith   Note:
549320f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
549420f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
549507218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
549620f4b53cSBarry Smith 
54971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5498e5e52638SMatthew G. Knepley @*/
549907218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5500d71ae5a4SJacob Faibussowitsch {
5501e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5502e5e52638SMatthew G. Knepley 
5503e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5504e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5505e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
55069371c9d4SSatish Balay   if (fields) {
55079371c9d4SSatish Balay     PetscValidPointer(fields, 3);
55089371c9d4SSatish Balay     *fields = NULL;
55099371c9d4SSatish Balay   }
55109371c9d4SSatish Balay   if (ds) {
55119371c9d4SSatish Balay     PetscValidPointer(ds, 4);
55129371c9d4SSatish Balay     *ds = NULL;
55139371c9d4SSatish Balay   }
551407218a29SMatthew G. Knepley   if (dsIn) {
551507218a29SMatthew G. Knepley     PetscValidPointer(dsIn, 5);
551607218a29SMatthew G. Knepley     *dsIn = NULL;
551707218a29SMatthew G. Knepley   }
5518e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5519154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5520b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5521b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
552207218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
55233ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5524b3cf3223SMatthew G. Knepley     }
5525e5e52638SMatthew G. Knepley   }
55263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5527e5e52638SMatthew G. Knepley }
5528e5e52638SMatthew G. Knepley 
5529e5e52638SMatthew G. Knepley /*@
5530bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5531083401c6SMatthew G. Knepley 
553220f4b53cSBarry Smith   Collective
5533083401c6SMatthew G. Knepley 
5534083401c6SMatthew G. Knepley   Input Parameters:
5535bb7acecfSBarry Smith + dm     - The `DM`
553620f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
553707218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
553807218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
553907218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5540083401c6SMatthew G. Knepley 
554120f4b53cSBarry Smith   Level: advanced
554220f4b53cSBarry Smith 
5543bb7acecfSBarry Smith   Note:
5544bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5545083401c6SMatthew G. Knepley   the fields argument is ignored.
5546083401c6SMatthew G. Knepley 
55471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5548083401c6SMatthew G. Knepley @*/
554907218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5550d71ae5a4SJacob Faibussowitsch {
5551083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5552083401c6SMatthew G. Knepley 
5553083401c6SMatthew G. Knepley   PetscFunctionBegin;
5554083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5555083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
555607218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5557064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
555807218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5559083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5560083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
55619566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
556207218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5563083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
556407218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
55653ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5566083401c6SMatthew G. Knepley     }
5567083401c6SMatthew G. Knepley   }
55689566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
55699566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
55709566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
55719566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
557207218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5573083401c6SMatthew G. Knepley   if (!label) {
5574083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5575083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5576083401c6SMatthew G. Knepley     Nds = 0;
5577083401c6SMatthew G. Knepley   }
5578083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5579083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5580083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
558107218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
55823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5583083401c6SMatthew G. Knepley }
5584083401c6SMatthew G. Knepley 
5585083401c6SMatthew G. Knepley /*@
558620f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5587e5e52638SMatthew G. Knepley 
558820f4b53cSBarry Smith   Not Collective
5589e5e52638SMatthew G. Knepley 
5590e5e52638SMatthew G. Knepley   Input Parameters:
559120f4b53cSBarry Smith + dm  - The `DM`
5592e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5593e5e52638SMatthew G. Knepley 
5594e5e52638SMatthew G. Knepley   Output Parameters:
559520f4b53cSBarry Smith + label  - The region label, or `NULL`
559620f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
559707218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
559807218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5599e5e52638SMatthew G. Knepley 
5600e5e52638SMatthew G. Knepley   Level: advanced
5601e5e52638SMatthew G. Knepley 
56021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5603e5e52638SMatthew G. Knepley @*/
560407218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5605d71ae5a4SJacob Faibussowitsch {
5606e5e52638SMatthew G. Knepley   PetscInt Nds;
5607e5e52638SMatthew G. Knepley 
5608e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5609e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
56109566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
561163a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5612e5e52638SMatthew G. Knepley   if (label) {
5613e5e52638SMatthew G. Knepley     PetscValidPointer(label, 3);
5614e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5615e5e52638SMatthew G. Knepley   }
5616b3cf3223SMatthew G. Knepley   if (fields) {
5617b3cf3223SMatthew G. Knepley     PetscValidPointer(fields, 4);
5618b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5619b3cf3223SMatthew G. Knepley   }
5620e5e52638SMatthew G. Knepley   if (ds) {
5621b3cf3223SMatthew G. Knepley     PetscValidPointer(ds, 5);
5622e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5623e5e52638SMatthew G. Knepley   }
562407218a29SMatthew G. Knepley   if (dsIn) {
562507218a29SMatthew G. Knepley     PetscValidPointer(dsIn, 6);
562607218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
562707218a29SMatthew G. Knepley   }
56283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5629e5e52638SMatthew G. Knepley }
5630e5e52638SMatthew G. Knepley 
5631e5e52638SMatthew G. Knepley /*@
563220f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5633e5e52638SMatthew G. Knepley 
563420f4b53cSBarry Smith   Not Collective
5635e5e52638SMatthew G. Knepley 
5636e5e52638SMatthew G. Knepley   Input Parameters:
563720f4b53cSBarry Smith + dm     - The `DM`
5638083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
563920f4b53cSBarry Smith . label  - The region label, or `NULL`
564007218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
564107218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
564207218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5643e5e52638SMatthew G. Knepley 
5644e5e52638SMatthew G. Knepley   Level: advanced
5645e5e52638SMatthew G. Knepley 
56461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5647e5e52638SMatthew G. Knepley @*/
564807218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5649d71ae5a4SJacob Faibussowitsch {
5650083401c6SMatthew G. Knepley   PetscInt Nds;
5651e5e52638SMatthew G. Knepley 
5652e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5653e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5654ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
56559566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
565663a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
56579566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
56589566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5659083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5660083401c6SMatthew G. Knepley   if (fields) {
5661083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
56629566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
56639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5664083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5665e5e52638SMatthew G. Knepley   }
5666083401c6SMatthew G. Knepley   if (ds) {
5667083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
56689566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
56699566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5670083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5671083401c6SMatthew G. Knepley   }
567207218a29SMatthew G. Knepley   if (dsIn) {
567307218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
567407218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
567507218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
567607218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
567707218a29SMatthew G. Knepley   }
56783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5679e5e52638SMatthew G. Knepley }
5680e5e52638SMatthew G. Knepley 
5681e5e52638SMatthew G. Knepley /*@
568220f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
56831d3af9e0SMatthew G. Knepley 
568420f4b53cSBarry Smith   Not Collective
56851d3af9e0SMatthew G. Knepley 
56861d3af9e0SMatthew G. Knepley   Input Parameters:
568720f4b53cSBarry Smith + dm  - The `DM`
568820f4b53cSBarry Smith - ds  - The `PetscDS` defined on the given region
56891d3af9e0SMatthew G. Knepley 
56901d3af9e0SMatthew G. Knepley   Output Parameter:
56911d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
56921d3af9e0SMatthew G. Knepley 
56931d3af9e0SMatthew G. Knepley   Level: advanced
56941d3af9e0SMatthew G. Knepley 
56951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
56961d3af9e0SMatthew G. Knepley @*/
5697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5698d71ae5a4SJacob Faibussowitsch {
56991d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
57001d3af9e0SMatthew G. Knepley 
57011d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
57021d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57031d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
5704dadcf809SJacob Faibussowitsch   PetscValidIntPointer(num, 3);
57059566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
57069371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
57079371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
57081d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
57091d3af9e0SMatthew G. Knepley   else *num = n;
57103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57111d3af9e0SMatthew G. Knepley }
57121d3af9e0SMatthew G. Knepley 
57132df84da0SMatthew G. Knepley /*@C
5714bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
57152df84da0SMatthew G. Knepley 
571620f4b53cSBarry Smith   Not Collective
57172df84da0SMatthew G. Knepley 
5718f1a722f8SMatthew G. Knepley   Input Parameters:
5719bb7acecfSBarry Smith + dm     - The `DM`
57202df84da0SMatthew G. Knepley . Nc     - The number of components for the field
572120f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5722bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
57232df84da0SMatthew G. Knepley 
57242df84da0SMatthew G. Knepley   Output Parameter:
5725bb7acecfSBarry Smith . fem - The `PetscFE`
57262df84da0SMatthew G. Knepley 
572720f4b53cSBarry Smith   Level: intermediate
572820f4b53cSBarry Smith 
5729bb7acecfSBarry Smith   Note:
5730bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
57312df84da0SMatthew G. Knepley 
57321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
57332df84da0SMatthew G. Knepley @*/
5734d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5735d71ae5a4SJacob Faibussowitsch {
57362df84da0SMatthew G. Knepley   DMPolytopeType ct;
57372df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
57382df84da0SMatthew G. Knepley 
57392df84da0SMatthew G. Knepley   PetscFunctionBegin;
57402df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57412df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
57422df84da0SMatthew G. Knepley   if (prefix) PetscValidCharPointer(prefix, 3);
57432df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
57442df84da0SMatthew G. Knepley   PetscValidPointer(fem, 5);
57459566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
57469566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
57479566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
57489566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
57493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57502df84da0SMatthew G. Knepley }
57512df84da0SMatthew G. Knepley 
57521d3af9e0SMatthew G. Knepley /*@
5753bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5754e5e52638SMatthew G. Knepley 
575520f4b53cSBarry Smith   Collective
5756e5e52638SMatthew G. Knepley 
5757e5e52638SMatthew G. Knepley   Input Parameter:
5758bb7acecfSBarry Smith . dm - The `DM`
5759e5e52638SMatthew G. Knepley 
576020f4b53cSBarry Smith   Options Database Key:
5761bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
576245480ffeSMatthew G. Knepley 
576320f4b53cSBarry Smith   Level: intermediate
576420f4b53cSBarry Smith 
57651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5766e5e52638SMatthew G. Knepley @*/
5767d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5768d71ae5a4SJacob Faibussowitsch {
5769e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5770083401c6SMatthew G. Knepley   PetscDS   dsDef;
5771083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5772f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5773f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5774e5e52638SMatthew G. Knepley 
5775e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5776e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57773ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
57789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
57799566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5780083401c6SMatthew G. Knepley   /* Determine how many regions we have */
57819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5782083401c6SMatthew G. Knepley   Nl   = 0;
5783083401c6SMatthew G. Knepley   Ndef = 0;
5784083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5785083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5786083401c6SMatthew G. Knepley     PetscInt l;
5787083401c6SMatthew G. Knepley 
5788f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5789f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5790f918ec44SMatthew G. Knepley     {
5791f918ec44SMatthew G. Knepley       PetscClassId id;
5792f918ec44SMatthew G. Knepley 
57939566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5794f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5795f918ec44SMatthew G. Knepley         Ceed ceed;
5796f918ec44SMatthew G. Knepley 
57979566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
57989566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5799f918ec44SMatthew G. Knepley       }
5800f918ec44SMatthew G. Knepley     }
5801f918ec44SMatthew G. Knepley #endif
58029371c9d4SSatish Balay     if (!label) {
58039371c9d4SSatish Balay       ++Ndef;
58049371c9d4SSatish Balay       continue;
58059371c9d4SSatish Balay     }
58069371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
58079371c9d4SSatish Balay       if (label == labelSet[l]) break;
5808083401c6SMatthew G. Knepley     if (l < Nl) continue;
5809083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5810083401c6SMatthew G. Knepley   }
5811083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
581207218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5813083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5814b3cf3223SMatthew G. Knepley     IS        fields;
5815b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5816b3cf3223SMatthew G. Knepley 
58179371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58189371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
58197a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
58209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
58219371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58229371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
58239566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
58249566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
58259566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
58269566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
582788f0c812SMatthew G. Knepley 
58289566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
582907218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
58309566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
58319566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
58322df9ee95SMatthew G. Knepley   }
583307218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
58349566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5835083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5836083401c6SMatthew G. Knepley   if (Ndef && Nl) {
58370122748bSMatthew G. Knepley     DM              plex;
5838083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5839083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5840083401c6SMatthew G. Knepley     PetscInt       *fields;
5841083401c6SMatthew G. Knepley     const PetscInt *cells;
5842083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
58430122748bSMatthew G. Knepley 
58449566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
58459566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
58469566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
58479566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
58485fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5849083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5850083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5851083401c6SMatthew G. Knepley       IS      pointIS;
5852083401c6SMatthew G. Knepley 
58539566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
58549566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
58559566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
58569566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5857083401c6SMatthew G. Knepley     }
58589566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5859083401c6SMatthew G. Knepley 
58609566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
58619566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
58629566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
58639566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
58649566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
58659566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
58669566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
5867083401c6SMatthew G. Knepley 
58689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
58699371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
58709371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
58719566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
58729566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
58739566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
58749566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
5875083401c6SMatthew G. Knepley 
58769566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
587707218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
58789566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
58799566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
58809566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
58819566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
58829566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5883083401c6SMatthew G. Knepley   }
5884083401c6SMatthew G. Knepley   /* Create label DSes
5885083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
5886083401c6SMatthew G. Knepley   */
5887083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
5888083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
5889083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
589007218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
5891083401c6SMatthew G. Knepley     IS        fields;
5892083401c6SMatthew G. Knepley     PetscInt *fld, nf;
5893083401c6SMatthew G. Knepley 
58949566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
58959371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58969371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
58979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
58989371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
58999371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
59009566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59019566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59029566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59039566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
59049566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
5905083401c6SMatthew G. Knepley     {
5906083401c6SMatthew G. Knepley       DMPolytopeType ct;
5907083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
59085fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
59090122748bSMatthew G. Knepley 
59109566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
5911665f567fSMatthew G. Knepley       if (lStart >= 0) {
59129566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
5913412e9a14SMatthew G. Knepley         switch (ct) {
5914412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
5915412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
5916412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
5917d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
5918d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
5919d71ae5a4SJacob Faibussowitsch           break;
5920d71ae5a4SJacob Faibussowitsch         default:
5921d71ae5a4SJacob Faibussowitsch           break;
5922412e9a14SMatthew G. Knepley         }
5923665f567fSMatthew G. Knepley       }
5924712fec58SPierre Jolivet       PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
592507218a29SMatthew G. Knepley       if (isCohesive) {
592607218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
592707218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
592807218a29SMatthew G. Knepley       }
59295fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
59305fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
59315fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
59329566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
59339566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
593407218a29SMatthew G. Knepley             if (dsIn) {
593507218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
593607218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
593707218a29SMatthew G. Knepley             }
59385fedec97SMatthew G. Knepley           }
59395fedec97SMatthew G. Knepley           ++nf;
59405fedec97SMatthew G. Knepley         }
59415fedec97SMatthew G. Knepley       }
5942e5e52638SMatthew G. Knepley     }
594307218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
594407218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
59459566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
594607218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
5947e5e52638SMatthew G. Knepley   }
59489566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
5949e5e52638SMatthew G. Knepley   /* Set fields in DSes */
5950083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5951083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
595207218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
5953083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
5954083401c6SMatthew G. Knepley     const PetscInt *fld;
59555fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
59565fedec97SMatthew G. Knepley     PetscBool       isCohesive;
5957e5e52638SMatthew G. Knepley 
59589566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
59599566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
59609566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
59619566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
5962083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
5963083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
59645fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
5965e5e52638SMatthew G. Knepley       PetscClassId id;
5966e5e52638SMatthew G. Knepley 
59675fedec97SMatthew G. Knepley       /* Handle DS with no fields */
59689566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
59695fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
597007218a29SMatthew G. Knepley       if (isCohesive) {
597107218a29SMatthew G. Knepley         if (!isCohesiveField) {
597207218a29SMatthew G. Knepley           PetscObject bdDisc;
597307218a29SMatthew G. Knepley 
597407218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
597507218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
597607218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
597707218a29SMatthew G. Knepley         } else {
59789566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
597907218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
598007218a29SMatthew G. Knepley         }
598107218a29SMatthew G. Knepley       } else {
598207218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
598307218a29SMatthew G. Knepley       }
5984083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
59859566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
5986e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
5987e5e52638SMatthew G. Knepley     }
59889566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
5989e5e52638SMatthew G. Knepley   }
5990f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
59919566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
5992f9244615SMatthew G. Knepley   if (flg) {
59933b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
59943b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
599507218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
59963b4aee56SMatthew G. Knepley       PetscInt Nf, f;
59973b4aee56SMatthew G. Knepley 
59989566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
599907218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
600007218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
600107218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
600207218a29SMatthew G. Knepley       }
60033b4aee56SMatthew G. Knepley     }
6004f9244615SMatthew G. Knepley   }
6005e5e52638SMatthew G. Knepley   /* Setup DSes */
6006e5e52638SMatthew G. Knepley   if (doSetup) {
600707218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
600807218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
600907218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
601007218a29SMatthew G. Knepley     }
6011e5e52638SMatthew G. Knepley   }
60123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6013e5e52638SMatthew G. Knepley }
6014e5e52638SMatthew G. Knepley 
6015e5e52638SMatthew G. Knepley /*@
6016bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
60177f96f943SMatthew G. Knepley 
601820f4b53cSBarry Smith   Collective
6019f2cacb80SMatthew G. Knepley 
60207f96f943SMatthew G. Knepley   Input Parameters:
6021bb7acecfSBarry Smith + dm   - The `DM`
60227f96f943SMatthew G. Knepley - time - The time
60237f96f943SMatthew G. Knepley 
60247f96f943SMatthew G. Knepley   Output Parameters:
602520f4b53cSBarry Smith + u    - The vector will be filled with exact solution values, or `NULL`
602620f4b53cSBarry Smith - u_t  - The vector will be filled with the time derivative of exact solution values, or `NULL`
602720f4b53cSBarry Smith 
602820f4b53cSBarry Smith   Level: developer
60297f96f943SMatthew G. Knepley 
6030bb7acecfSBarry Smith   Note:
6031bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
60327f96f943SMatthew G. Knepley 
60331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
60347f96f943SMatthew G. Knepley @*/
6035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6036d71ae5a4SJacob Faibussowitsch {
60377f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
60387f96f943SMatthew G. Knepley   void   **ectxs;
6039f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
60407f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
60417f96f943SMatthew G. Knepley 
60427f96f943SMatthew G. Knepley   PetscFunctionBegin;
6043f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6044f60fa741SMatthew G. Knepley   if (u) {
6045f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6046f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6047f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6048f60fa741SMatthew G. Knepley   }
6049f60fa741SMatthew G. Knepley   if (u_t) {
6050f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6051f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6052f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6053f60fa741SMatthew G. Knepley   }
60549566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
60559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
60569566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
60577f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
60587f96f943SMatthew G. Knepley     PetscDS         ds;
60597f96f943SMatthew G. Knepley     DMLabel         label;
60607f96f943SMatthew G. Knepley     IS              fieldIS;
60617f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
60627f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
60637f96f943SMatthew G. Knepley 
606407218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
60659566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
60669566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
60679566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
60689566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6069f2cacb80SMatthew G. Knepley     if (u) {
6070f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6071f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6072f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
60737f96f943SMatthew G. Knepley     }
6074f2cacb80SMatthew G. Knepley     if (u_t) {
60759566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
60769566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6077f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6078f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6079f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6080f2cacb80SMatthew G. Knepley     }
60819566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6082f2cacb80SMatthew G. Knepley   }
6083f2cacb80SMatthew G. Knepley   if (u) {
60849566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
60859566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6086f2cacb80SMatthew G. Knepley   }
6087f2cacb80SMatthew G. Knepley   if (u_t) {
60889566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
60899566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6090f2cacb80SMatthew G. Knepley   }
60919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6092f60fa741SMatthew G. Knepley   if (u) {
6093f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6094f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6095f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6096f60fa741SMatthew G. Knepley   }
6097f60fa741SMatthew G. Knepley   if (u_t) {
6098f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6099f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6100f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6101f60fa741SMatthew G. Knepley   }
61023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61037f96f943SMatthew G. Knepley }
61047f96f943SMatthew G. Knepley 
610507218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
6106d71ae5a4SJacob Faibussowitsch {
610707218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
610845480ffeSMatthew G. Knepley 
610945480ffeSMatthew G. Knepley   PetscFunctionBegin;
61109566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
611107218a29SMatthew G. Knepley   PetscCall(PetscDSCopy(ds, dm, dsNew));
611207218a29SMatthew G. Knepley   if (dsIn) {
611307218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
611407218a29SMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, dm, dsInNew));
611545480ffeSMatthew G. Knepley   }
611607218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
61179566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
611807218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
61193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
612045480ffeSMatthew G. Knepley }
612145480ffeSMatthew G. Knepley 
61227f96f943SMatthew G. Knepley /*@
6123bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6124e5e52638SMatthew G. Knepley 
612520f4b53cSBarry Smith   Collective
6126e5e52638SMatthew G. Knepley 
6127e5e52638SMatthew G. Knepley   Input Parameter:
6128bb7acecfSBarry Smith . dm - The `DM`
6129e5e52638SMatthew G. Knepley 
6130e5e52638SMatthew G. Knepley   Output Parameter:
6131bb7acecfSBarry Smith . newdm - The `DM`
6132e5e52638SMatthew G. Knepley 
6133e5e52638SMatthew G. Knepley   Level: advanced
6134e5e52638SMatthew G. Knepley 
61351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6136e5e52638SMatthew G. Knepley @*/
6137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm)
6138d71ae5a4SJacob Faibussowitsch {
6139e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6140e5e52638SMatthew G. Knepley 
6141e5e52638SMatthew G. Knepley   PetscFunctionBegin;
61423ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
61439566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
61449566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6145e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6146e5e52638SMatthew G. Knepley     DMLabel  label;
6147b3cf3223SMatthew G. Knepley     IS       fields;
614807218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6149783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6150e5e52638SMatthew G. Knepley 
615107218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6152b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
615307218a29SMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn));
6154d5b43468SJose E. Roman     /* Complete new labels in the new DS */
615507218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
61569566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6157783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6158b8025e53SMatthew G. Knepley       PetscWeakForm wf;
615945480ffeSMatthew G. Knepley       DMLabel       label;
6160783e2ec8SMatthew G. Knepley       PetscInt      field;
6161783e2ec8SMatthew G. Knepley 
61629566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
61639566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6164783e2ec8SMatthew G. Knepley     }
6165e5e52638SMatthew G. Knepley   }
6166799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
61673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6168e5e52638SMatthew G. Knepley }
6169e5e52638SMatthew G. Knepley 
6170e5e52638SMatthew G. Knepley /*@
6171bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6172e5e52638SMatthew G. Knepley 
617320f4b53cSBarry Smith   Collective
6174e5e52638SMatthew G. Knepley 
6175e5e52638SMatthew G. Knepley   Input Parameter:
6176bb7acecfSBarry Smith . dm - The `DM`
6177e5e52638SMatthew G. Knepley 
6178e5e52638SMatthew G. Knepley   Output Parameter:
6179bb7acecfSBarry Smith . newdm - The `DM`
6180e5e52638SMatthew G. Knepley 
6181e5e52638SMatthew G. Knepley   Level: advanced
6182e5e52638SMatthew G. Knepley 
6183bb7acecfSBarry Smith   Developer Note:
6184bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6185bb7acecfSBarry Smith 
61861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6187e5e52638SMatthew G. Knepley @*/
6188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6189d71ae5a4SJacob Faibussowitsch {
6190e5e52638SMatthew G. Knepley   PetscFunctionBegin;
61919566063dSJacob Faibussowitsch   PetscCall(DMCopyFields(dm, newdm));
61929566063dSJacob Faibussowitsch   PetscCall(DMCopyDS(dm, newdm));
61933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6194e5e52638SMatthew G. Knepley }
6195e5e52638SMatthew G. Knepley 
6196c73cfb54SMatthew G. Knepley /*@
6197bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6198c73cfb54SMatthew G. Knepley 
619920f4b53cSBarry Smith   Not Collective
6200c73cfb54SMatthew G. Knepley 
6201c73cfb54SMatthew G. Knepley   Input Parameter:
6202bb7acecfSBarry Smith . dm - The `DM`
6203c73cfb54SMatthew G. Knepley 
6204c73cfb54SMatthew G. Knepley   Output Parameter:
6205c73cfb54SMatthew G. Knepley . dim - The topological dimension
6206c73cfb54SMatthew G. Knepley 
6207c73cfb54SMatthew G. Knepley   Level: beginner
6208c73cfb54SMatthew G. Knepley 
62091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6210c73cfb54SMatthew G. Knepley @*/
6211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6212d71ae5a4SJacob Faibussowitsch {
6213c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6214c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6215534a8f05SLisandro Dalcin   PetscValidIntPointer(dim, 2);
6216c73cfb54SMatthew G. Knepley   *dim = dm->dim;
62173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6218c73cfb54SMatthew G. Knepley }
6219c73cfb54SMatthew G. Knepley 
6220c73cfb54SMatthew G. Knepley /*@
6221bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6222c73cfb54SMatthew G. Knepley 
622320f4b53cSBarry Smith   Collective
6224c73cfb54SMatthew G. Knepley 
6225c73cfb54SMatthew G. Knepley   Input Parameters:
6226bb7acecfSBarry Smith + dm - The `DM`
6227c73cfb54SMatthew G. Knepley - dim - The topological dimension
6228c73cfb54SMatthew G. Knepley 
6229c73cfb54SMatthew G. Knepley   Level: beginner
6230c73cfb54SMatthew G. Knepley 
62311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6232c73cfb54SMatthew G. Knepley @*/
6233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6234d71ae5a4SJacob Faibussowitsch {
6235e5e52638SMatthew G. Knepley   PetscDS  ds;
623645480ffeSMatthew G. Knepley   PetscInt Nds, n;
6237f17e8794SMatthew G. Knepley 
6238c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6239c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6240c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6241c73cfb54SMatthew G. Knepley   dm->dim = dim;
6242d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
62439566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
624445480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
624507218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
62469566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
624745480ffeSMatthew G. Knepley     }
6248d17bd122SMatthew G. Knepley   }
62493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6250c73cfb54SMatthew G. Knepley }
6251c73cfb54SMatthew G. Knepley 
6252793f3fe5SMatthew G. Knepley /*@
6253793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6254793f3fe5SMatthew G. Knepley 
625520f4b53cSBarry Smith   Collective
6256793f3fe5SMatthew G. Knepley 
6257793f3fe5SMatthew G. Knepley   Input Parameters:
6258bb7acecfSBarry Smith + dm - the `DM`
6259793f3fe5SMatthew G. Knepley - dim - the dimension
6260793f3fe5SMatthew G. Knepley 
6261793f3fe5SMatthew G. Knepley   Output Parameters:
6262793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6263aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension
6264793f3fe5SMatthew G. Knepley 
626520f4b53cSBarry Smith   Level: intermediate
626620f4b53cSBarry Smith 
6267793f3fe5SMatthew G. Knepley   Note:
6268793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6269a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6270793f3fe5SMatthew G. Knepley   then the interval is empty.
6271793f3fe5SMatthew G. Knepley 
62721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6273793f3fe5SMatthew G. Knepley @*/
6274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6275d71ae5a4SJacob Faibussowitsch {
6276793f3fe5SMatthew G. Knepley   PetscInt d;
6277793f3fe5SMatthew G. Knepley 
6278793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6279793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
62809566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
62817a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6282dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
62833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6284793f3fe5SMatthew G. Knepley }
6285793f3fe5SMatthew G. Knepley 
62866636e97aSMatthew G Knepley /*@
6287bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6288f4d763aaSMatthew G. Knepley 
628920f4b53cSBarry Smith   Collective
62908f700142SStefano Zampini 
6291f4d763aaSMatthew G. Knepley   Input Parameter:
6292bb7acecfSBarry Smith . dm - The original `DM`
6293f4d763aaSMatthew G. Knepley 
6294f4d763aaSMatthew G. Knepley   Output Parameter:
6295bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6296f4d763aaSMatthew G. Knepley 
6297f4d763aaSMatthew G. Knepley   Level: intermediate
6298f4d763aaSMatthew G. Knepley 
6299bb7acecfSBarry Smith   Note:
6300bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6301bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6302bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6303bb7acecfSBarry Smith 
63041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6305f4d763aaSMatthew G. Knepley @*/
6306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6307d71ae5a4SJacob Faibussowitsch {
6308c26acbdeSMatthew G. Knepley   PetscSection section;
63092d4e4a49SMatthew G. Knepley   PetscBool    hasConstraints, ghasConstraints;
631014f150ffSMatthew G. Knepley 
631114f150ffSMatthew G. Knepley   PetscFunctionBegin;
631214f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
631314f150ffSMatthew G. Knepley   PetscValidPointer(odm, 2);
63149566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
63159566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6316712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
63172d4e4a49SMatthew G. Knepley   if (!ghasConstraints) {
6318c26acbdeSMatthew G. Knepley     *odm = dm;
63193ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6320c26acbdeSMatthew G. Knepley   }
632114f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6322c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
632314f150ffSMatthew G. Knepley     PetscSF      sf;
632414f150ffSMatthew G. Knepley 
63259566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
63269566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
63279566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
63289566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
63299566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
63309566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
63319566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection));
63329566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
63339566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
633414f150ffSMatthew G. Knepley   }
633514f150ffSMatthew G. Knepley   *odm = dm->dmBC;
63363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
633714f150ffSMatthew G. Knepley }
6338f4d763aaSMatthew G. Knepley 
6339f4d763aaSMatthew G. Knepley /*@
6340cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6341f4d763aaSMatthew G. Knepley 
6342f4d763aaSMatthew G. Knepley   Input Parameter:
6343bb7acecfSBarry Smith . dm - The original `DM`
6344f4d763aaSMatthew G. Knepley 
6345cdb7a50dSMatthew G. Knepley   Output Parameters:
6346cdb7a50dSMatthew G. Knepley + num - The output sequence number
6347cdb7a50dSMatthew G. Knepley - val - The output sequence value
6348f4d763aaSMatthew G. Knepley 
6349f4d763aaSMatthew G. Knepley   Level: intermediate
6350f4d763aaSMatthew G. Knepley 
6351bb7acecfSBarry Smith   Note:
6352bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6353bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6354bb7acecfSBarry Smith 
6355bb7acecfSBarry Smith   Developer Note:
6356bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6357bb7acecfSBarry Smith   not directly related to the `DM`.
6358f4d763aaSMatthew G. Knepley 
63591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6360f4d763aaSMatthew G. Knepley @*/
6361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6362d71ae5a4SJacob Faibussowitsch {
6363f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6364f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
63659371c9d4SSatish Balay   if (num) {
63669371c9d4SSatish Balay     PetscValidIntPointer(num, 2);
63679371c9d4SSatish Balay     *num = dm->outputSequenceNum;
63689371c9d4SSatish Balay   }
63699371c9d4SSatish Balay   if (val) {
63709371c9d4SSatish Balay     PetscValidRealPointer(val, 3);
63719371c9d4SSatish Balay     *val = dm->outputSequenceVal;
63729371c9d4SSatish Balay   }
63733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6374f4d763aaSMatthew G. Knepley }
6375f4d763aaSMatthew G. Knepley 
6376f4d763aaSMatthew G. Knepley /*@
6377cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6378f4d763aaSMatthew G. Knepley 
6379f4d763aaSMatthew G. Knepley   Input Parameters:
6380bb7acecfSBarry Smith + dm - The original `DM`
6381cdb7a50dSMatthew G. Knepley . num - The output sequence number
6382cdb7a50dSMatthew G. Knepley - val - The output sequence value
6383f4d763aaSMatthew G. Knepley 
6384f4d763aaSMatthew G. Knepley   Level: intermediate
6385f4d763aaSMatthew G. Knepley 
6386bb7acecfSBarry Smith   Note:
6387bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6388bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6389f4d763aaSMatthew G. Knepley 
63901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6391f4d763aaSMatthew G. Knepley @*/
6392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6393d71ae5a4SJacob Faibussowitsch {
6394f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6395f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6396f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6397cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
63983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6399cdb7a50dSMatthew G. Knepley }
6400cdb7a50dSMatthew G. Knepley 
6401cdb7a50dSMatthew G. Knepley /*@C
6402bb7acecfSBarry Smith  DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6403cdb7a50dSMatthew G. Knepley 
6404cdb7a50dSMatthew G. Knepley   Input Parameters:
6405bb7acecfSBarry Smith + dm   - The original `DM`
6406cdb7a50dSMatthew G. Knepley . name - The sequence name
6407cdb7a50dSMatthew G. Knepley - num  - The output sequence number
6408cdb7a50dSMatthew G. Knepley 
6409cdb7a50dSMatthew G. Knepley   Output Parameter:
6410cdb7a50dSMatthew G. Knepley . val  - The output sequence value
6411cdb7a50dSMatthew G. Knepley 
6412cdb7a50dSMatthew G. Knepley   Level: intermediate
6413cdb7a50dSMatthew G. Knepley 
6414bb7acecfSBarry Smith   Note:
6415bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6416bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6417bb7acecfSBarry Smith 
6418bb7acecfSBarry Smith   Developer Note:
6419bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6420cdb7a50dSMatthew G. Knepley 
64211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6422cdb7a50dSMatthew G. Knepley @*/
6423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val)
6424d71ae5a4SJacob Faibussowitsch {
6425cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6426cdb7a50dSMatthew G. Knepley 
6427cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6428cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6429cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6430064a246eSJacob Faibussowitsch   PetscValidRealPointer(val, 5);
64319566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6432cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6433cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6434cdb7a50dSMatthew G. Knepley     PetscScalar value;
6435cdb7a50dSMatthew G. Knepley 
64369566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
64374aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6438cdb7a50dSMatthew G. Knepley #endif
6439cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
64403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6441f4d763aaSMatthew G. Knepley }
64428e4ac7eaSMatthew G. Knepley 
64438e4ac7eaSMatthew G. Knepley /*@
6444bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
64458e4ac7eaSMatthew G. Knepley 
644620f4b53cSBarry Smith   Not Collective
64478e4ac7eaSMatthew G. Knepley 
64488e4ac7eaSMatthew G. Knepley   Input Parameter:
6449bb7acecfSBarry Smith . dm - The `DM`
64508e4ac7eaSMatthew G. Knepley 
64518e4ac7eaSMatthew G. Knepley   Output Parameter:
6452bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
64538e4ac7eaSMatthew G. Knepley 
64548e4ac7eaSMatthew G. Knepley   Level: beginner
64558e4ac7eaSMatthew G. Knepley 
64561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
64578e4ac7eaSMatthew G. Knepley @*/
6458d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6459d71ae5a4SJacob Faibussowitsch {
64608e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
64618e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6462534a8f05SLisandro Dalcin   PetscValidBoolPointer(useNatural, 2);
64638e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
64643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
64658e4ac7eaSMatthew G. Knepley }
64668e4ac7eaSMatthew G. Knepley 
64678e4ac7eaSMatthew G. Knepley /*@
6468bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
64698e4ac7eaSMatthew G. Knepley 
647020f4b53cSBarry Smith   Collective
64718e4ac7eaSMatthew G. Knepley 
64728e4ac7eaSMatthew G. Knepley   Input Parameters:
6473bb7acecfSBarry Smith  + dm - The `DM`
6474bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
64758e4ac7eaSMatthew G. Knepley 
6476bb7acecfSBarry Smith   Note:
6477bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
64785d3b26e6SMatthew G. Knepley 
64798e4ac7eaSMatthew G. Knepley   Level: beginner
64808e4ac7eaSMatthew G. Knepley 
64811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
64828e4ac7eaSMatthew G. Knepley @*/
6483d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6484d71ae5a4SJacob Faibussowitsch {
64858e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
64868e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64878833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
64888e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
64893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
64908e4ac7eaSMatthew G. Knepley }
6491c58f1c22SToby Isaac 
6492c58f1c22SToby Isaac /*@C
6493bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6494c58f1c22SToby Isaac 
6495c58f1c22SToby Isaac   Not Collective
6496c58f1c22SToby Isaac 
6497c58f1c22SToby Isaac   Input Parameters:
6498bb7acecfSBarry Smith + dm   - The `DM` object
6499c58f1c22SToby Isaac - name - The label name
6500c58f1c22SToby Isaac 
6501c58f1c22SToby Isaac   Level: intermediate
6502c58f1c22SToby Isaac 
65031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6504c58f1c22SToby Isaac @*/
6505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6506d71ae5a4SJacob Faibussowitsch {
65075d80c0bfSVaclav Hapla   PetscBool flg;
65085d80c0bfSVaclav Hapla   DMLabel   label;
6509c58f1c22SToby Isaac 
6510c58f1c22SToby Isaac   PetscFunctionBegin;
6511c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6512c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
65139566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6514c58f1c22SToby Isaac   if (!flg) {
65159566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
65169566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
65179566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6518c58f1c22SToby Isaac   }
65193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6520c58f1c22SToby Isaac }
6521c58f1c22SToby Isaac 
6522c58f1c22SToby Isaac /*@C
6523bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
65240fdc7489SMatthew Knepley 
65250fdc7489SMatthew Knepley   Not Collective
65260fdc7489SMatthew Knepley 
65270fdc7489SMatthew Knepley   Input Parameters:
6528bb7acecfSBarry Smith + dm   - The `DM` object
65290fdc7489SMatthew Knepley . l    - The index for the label
65300fdc7489SMatthew Knepley - name - The label name
65310fdc7489SMatthew Knepley 
65320fdc7489SMatthew Knepley   Level: intermediate
65330fdc7489SMatthew Knepley 
65341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
65350fdc7489SMatthew Knepley @*/
6536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6537d71ae5a4SJacob Faibussowitsch {
65380fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
65390fdc7489SMatthew Knepley   DMLabel     label;
65400fdc7489SMatthew Knepley   PetscInt    Nl, m;
65410fdc7489SMatthew Knepley   PetscBool   flg, match;
65420fdc7489SMatthew Knepley   const char *lname;
65430fdc7489SMatthew Knepley 
65440fdc7489SMatthew Knepley   PetscFunctionBegin;
65450fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6546064a246eSJacob Faibussowitsch   PetscValidCharPointer(name, 3);
65479566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
65480fdc7489SMatthew Knepley   if (!flg) {
65499566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
65509566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
65519566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
65520fdc7489SMatthew Knepley   }
65539566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
655463a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
65550fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
65569566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
65579566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
65580fdc7489SMatthew Knepley     if (match) break;
65590fdc7489SMatthew Knepley   }
65603ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
65610fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
65620fdc7489SMatthew Knepley   else prev->next = orig->next;
65630fdc7489SMatthew Knepley   if (!l) {
65640fdc7489SMatthew Knepley     orig->next = dm->labels;
65650fdc7489SMatthew Knepley     dm->labels = orig;
65660fdc7489SMatthew Knepley   } else {
65679371c9d4SSatish Balay     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next)
65689371c9d4SSatish Balay       ;
65690fdc7489SMatthew Knepley     orig->next = prev->next;
65700fdc7489SMatthew Knepley     prev->next = orig;
65710fdc7489SMatthew Knepley   }
65723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
65730fdc7489SMatthew Knepley }
65740fdc7489SMatthew Knepley 
65750fdc7489SMatthew Knepley /*@C
6576bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6577c58f1c22SToby Isaac 
6578c58f1c22SToby Isaac   Not Collective
6579c58f1c22SToby Isaac 
6580c58f1c22SToby Isaac   Input Parameters:
6581bb7acecfSBarry Smith + dm   - The `DM` object
6582c58f1c22SToby Isaac . name - The label name
6583c58f1c22SToby Isaac - point - The mesh point
6584c58f1c22SToby Isaac 
6585c58f1c22SToby Isaac   Output Parameter:
6586c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6587c58f1c22SToby Isaac 
6588c58f1c22SToby Isaac   Level: beginner
6589c58f1c22SToby Isaac 
65901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6591c58f1c22SToby Isaac @*/
6592d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6593d71ae5a4SJacob Faibussowitsch {
6594c58f1c22SToby Isaac   DMLabel label;
6595c58f1c22SToby Isaac 
6596c58f1c22SToby Isaac   PetscFunctionBegin;
6597c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6598c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
65999566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
66007a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
66019566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
66023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6603c58f1c22SToby Isaac }
6604c58f1c22SToby Isaac 
6605c58f1c22SToby Isaac /*@C
6606bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6607c58f1c22SToby Isaac 
6608c58f1c22SToby Isaac   Not Collective
6609c58f1c22SToby Isaac 
6610c58f1c22SToby Isaac   Input Parameters:
6611bb7acecfSBarry Smith + dm   - The `DM` object
6612c58f1c22SToby Isaac . name - The label name
6613c58f1c22SToby Isaac . point - The mesh point
6614c58f1c22SToby Isaac - value - The label value for this point
6615c58f1c22SToby Isaac 
6616c58f1c22SToby Isaac   Output Parameter:
6617c58f1c22SToby Isaac 
6618c58f1c22SToby Isaac   Level: beginner
6619c58f1c22SToby Isaac 
66201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6621c58f1c22SToby Isaac @*/
6622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6623d71ae5a4SJacob Faibussowitsch {
6624c58f1c22SToby Isaac   DMLabel label;
6625c58f1c22SToby Isaac 
6626c58f1c22SToby Isaac   PetscFunctionBegin;
6627c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6628c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
66299566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6630c58f1c22SToby Isaac   if (!label) {
66319566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
66329566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6633c58f1c22SToby Isaac   }
66349566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
66353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6636c58f1c22SToby Isaac }
6637c58f1c22SToby Isaac 
6638c58f1c22SToby Isaac /*@C
6639bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6640c58f1c22SToby Isaac 
6641c58f1c22SToby Isaac   Not Collective
6642c58f1c22SToby Isaac 
6643c58f1c22SToby Isaac   Input Parameters:
6644bb7acecfSBarry Smith + dm   - The `DM` object
6645c58f1c22SToby Isaac . name - The label name
6646c58f1c22SToby Isaac . point - The mesh point
6647c58f1c22SToby Isaac - value - The label value for this point
6648c58f1c22SToby Isaac 
6649c58f1c22SToby Isaac   Level: beginner
6650c58f1c22SToby Isaac 
66511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6652c58f1c22SToby Isaac @*/
6653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6654d71ae5a4SJacob Faibussowitsch {
6655c58f1c22SToby Isaac   DMLabel label;
6656c58f1c22SToby Isaac 
6657c58f1c22SToby Isaac   PetscFunctionBegin;
6658c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6659c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
66609566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
66613ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
66629566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
66633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6664c58f1c22SToby Isaac }
6665c58f1c22SToby Isaac 
6666c58f1c22SToby Isaac /*@C
6667bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6668c58f1c22SToby Isaac 
6669c58f1c22SToby Isaac   Not Collective
6670c58f1c22SToby Isaac 
6671c58f1c22SToby Isaac   Input Parameters:
6672bb7acecfSBarry Smith + dm   - The `DM` object
6673c58f1c22SToby Isaac - name - The label name
6674c58f1c22SToby Isaac 
6675c58f1c22SToby Isaac   Output Parameter:
6676c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6677c58f1c22SToby Isaac 
6678c58f1c22SToby Isaac   Level: beginner
6679c58f1c22SToby Isaac 
6680bb7acecfSBarry Smith   Developer Note:
6681bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6682bb7acecfSBarry Smith 
66831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6684c58f1c22SToby Isaac @*/
6685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6686d71ae5a4SJacob Faibussowitsch {
6687c58f1c22SToby Isaac   DMLabel label;
6688c58f1c22SToby Isaac 
6689c58f1c22SToby Isaac   PetscFunctionBegin;
6690c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6691c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6692534a8f05SLisandro Dalcin   PetscValidIntPointer(size, 3);
66939566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6694c58f1c22SToby Isaac   *size = 0;
66953ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
66969566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
66973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6698c58f1c22SToby Isaac }
6699c58f1c22SToby Isaac 
6700c58f1c22SToby Isaac /*@C
6701bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6702c58f1c22SToby Isaac 
6703c58f1c22SToby Isaac   Not Collective
6704c58f1c22SToby Isaac 
6705c58f1c22SToby Isaac   Input Parameters:
6706bb7acecfSBarry Smith + mesh - The `DM` object
6707c58f1c22SToby Isaac - name - The label name
6708c58f1c22SToby Isaac 
6709c58f1c22SToby Isaac   Output Parameter:
671020f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6711c58f1c22SToby Isaac 
6712c58f1c22SToby Isaac   Level: beginner
6713c58f1c22SToby Isaac 
67141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6715c58f1c22SToby Isaac @*/
6716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6717d71ae5a4SJacob Faibussowitsch {
6718c58f1c22SToby Isaac   DMLabel label;
6719c58f1c22SToby Isaac 
6720c58f1c22SToby Isaac   PetscFunctionBegin;
6721c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6722c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6723c58f1c22SToby Isaac   PetscValidPointer(ids, 3);
67249566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6725c58f1c22SToby Isaac   *ids = NULL;
6726dab2e251SBlaise Bourdin   if (label) {
67279566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6728dab2e251SBlaise Bourdin   } else {
6729dab2e251SBlaise Bourdin     /* returning an empty IS */
67309566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6731dab2e251SBlaise Bourdin   }
67323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6733c58f1c22SToby Isaac }
6734c58f1c22SToby Isaac 
6735c58f1c22SToby Isaac /*@C
6736c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6737c58f1c22SToby Isaac 
6738c58f1c22SToby Isaac   Not Collective
6739c58f1c22SToby Isaac 
6740c58f1c22SToby Isaac   Input Parameters:
6741bb7acecfSBarry Smith + dm - The `DM` object
6742c58f1c22SToby Isaac . name - The label name
6743c58f1c22SToby Isaac - value - The stratum value
6744c58f1c22SToby Isaac 
6745c58f1c22SToby Isaac   Output Parameter:
6746bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6747c58f1c22SToby Isaac 
6748c58f1c22SToby Isaac   Level: beginner
6749c58f1c22SToby Isaac 
67501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6751c58f1c22SToby Isaac @*/
6752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6753d71ae5a4SJacob Faibussowitsch {
6754c58f1c22SToby Isaac   DMLabel label;
6755c58f1c22SToby Isaac 
6756c58f1c22SToby Isaac   PetscFunctionBegin;
6757c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6758c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6759534a8f05SLisandro Dalcin   PetscValidIntPointer(size, 4);
67609566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6761c58f1c22SToby Isaac   *size = 0;
67623ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
67639566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
67643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6765c58f1c22SToby Isaac }
6766c58f1c22SToby Isaac 
6767c58f1c22SToby Isaac /*@C
6768c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
6769c58f1c22SToby Isaac 
6770c58f1c22SToby Isaac   Not Collective
6771c58f1c22SToby Isaac 
6772c58f1c22SToby Isaac   Input Parameters:
6773bb7acecfSBarry Smith + dm - The `DM` object
6774c58f1c22SToby Isaac . name - The label name
6775c58f1c22SToby Isaac - value - The stratum value
6776c58f1c22SToby Isaac 
6777c58f1c22SToby Isaac   Output Parameter:
677820f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
6779c58f1c22SToby Isaac 
6780c58f1c22SToby Isaac   Level: beginner
6781c58f1c22SToby Isaac 
67821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
6783c58f1c22SToby Isaac @*/
6784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
6785d71ae5a4SJacob Faibussowitsch {
6786c58f1c22SToby Isaac   DMLabel label;
6787c58f1c22SToby Isaac 
6788c58f1c22SToby Isaac   PetscFunctionBegin;
6789c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6790c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6791c58f1c22SToby Isaac   PetscValidPointer(points, 4);
67929566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6793c58f1c22SToby Isaac   *points = NULL;
67943ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
67959566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
67963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6797c58f1c22SToby Isaac }
6798c58f1c22SToby Isaac 
67994de306b1SToby Isaac /*@C
68009044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
68014de306b1SToby Isaac 
68024de306b1SToby Isaac   Not Collective
68034de306b1SToby Isaac 
68044de306b1SToby Isaac   Input Parameters:
6805bb7acecfSBarry Smith + dm - The `DM` object
68064de306b1SToby Isaac . name - The label name
68074de306b1SToby Isaac . value - The stratum value
68084de306b1SToby Isaac - points - The stratum points
68094de306b1SToby Isaac 
68104de306b1SToby Isaac   Level: beginner
68114de306b1SToby Isaac 
68121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
68134de306b1SToby Isaac @*/
6814d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
6815d71ae5a4SJacob Faibussowitsch {
68164de306b1SToby Isaac   DMLabel label;
68174de306b1SToby Isaac 
68184de306b1SToby Isaac   PetscFunctionBegin;
68194de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68204de306b1SToby Isaac   PetscValidCharPointer(name, 2);
68214de306b1SToby Isaac   PetscValidPointer(points, 4);
68229566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68233ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68249566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
68253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
68264de306b1SToby Isaac }
68274de306b1SToby Isaac 
6828c58f1c22SToby Isaac /*@C
6829bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
6830c58f1c22SToby Isaac 
6831c58f1c22SToby Isaac   Not Collective
6832c58f1c22SToby Isaac 
6833c58f1c22SToby Isaac   Input Parameters:
6834bb7acecfSBarry Smith + dm   - The `DM` object
6835c58f1c22SToby Isaac . name - The label name
6836c58f1c22SToby Isaac - value - The label value for this point
6837c58f1c22SToby Isaac 
6838c58f1c22SToby Isaac   Output Parameter:
6839c58f1c22SToby Isaac 
6840c58f1c22SToby Isaac   Level: beginner
6841c58f1c22SToby Isaac 
68421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6843c58f1c22SToby Isaac @*/
6844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
6845d71ae5a4SJacob Faibussowitsch {
6846c58f1c22SToby Isaac   DMLabel label;
6847c58f1c22SToby Isaac 
6848c58f1c22SToby Isaac   PetscFunctionBegin;
6849c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6850c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
68519566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68523ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
68539566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
68543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6855c58f1c22SToby Isaac }
6856c58f1c22SToby Isaac 
6857c58f1c22SToby Isaac /*@
6858bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
6859c58f1c22SToby Isaac 
6860c58f1c22SToby Isaac   Not Collective
6861c58f1c22SToby Isaac 
6862c58f1c22SToby Isaac   Input Parameter:
6863bb7acecfSBarry Smith . dm   - The `DM` object
6864c58f1c22SToby Isaac 
6865c58f1c22SToby Isaac   Output Parameter:
6866c58f1c22SToby Isaac . numLabels - the number of Labels
6867c58f1c22SToby Isaac 
6868c58f1c22SToby Isaac   Level: intermediate
6869c58f1c22SToby Isaac 
68701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6871c58f1c22SToby Isaac @*/
6872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
6873d71ae5a4SJacob Faibussowitsch {
68745d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6875c58f1c22SToby Isaac   PetscInt    n    = 0;
6876c58f1c22SToby Isaac 
6877c58f1c22SToby Isaac   PetscFunctionBegin;
6878c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6879534a8f05SLisandro Dalcin   PetscValidIntPointer(numLabels, 2);
68809371c9d4SSatish Balay   while (next) {
68819371c9d4SSatish Balay     ++n;
68829371c9d4SSatish Balay     next = next->next;
68839371c9d4SSatish Balay   }
6884c58f1c22SToby Isaac   *numLabels = n;
68853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6886c58f1c22SToby Isaac }
6887c58f1c22SToby Isaac 
6888c58f1c22SToby Isaac /*@C
6889c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
6890c58f1c22SToby Isaac 
6891c58f1c22SToby Isaac   Not Collective
6892c58f1c22SToby Isaac 
6893c58f1c22SToby Isaac   Input Parameters:
6894bb7acecfSBarry Smith + dm - The `DM` object
6895c58f1c22SToby Isaac - n  - the label number
6896c58f1c22SToby Isaac 
6897c58f1c22SToby Isaac   Output Parameter:
6898c58f1c22SToby Isaac . name - the label name
6899c58f1c22SToby Isaac 
6900c58f1c22SToby Isaac   Level: intermediate
6901c58f1c22SToby Isaac 
6902bb7acecfSBarry Smith   Developer Note:
6903bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
6904bb7acecfSBarry Smith 
69051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6906c58f1c22SToby Isaac @*/
6907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name)
6908d71ae5a4SJacob Faibussowitsch {
69095d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6910c58f1c22SToby Isaac   PetscInt    l    = 0;
6911c58f1c22SToby Isaac 
6912c58f1c22SToby Isaac   PetscFunctionBegin;
6913c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6914c58f1c22SToby Isaac   PetscValidPointer(name, 3);
6915c58f1c22SToby Isaac   while (next) {
6916c58f1c22SToby Isaac     if (l == n) {
69179566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
69183ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
6919c58f1c22SToby Isaac     }
6920c58f1c22SToby Isaac     ++l;
6921c58f1c22SToby Isaac     next = next->next;
6922c58f1c22SToby Isaac   }
692363a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
6924c58f1c22SToby Isaac }
6925c58f1c22SToby Isaac 
6926c58f1c22SToby Isaac /*@C
6927bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
6928c58f1c22SToby Isaac 
6929c58f1c22SToby Isaac   Not Collective
6930c58f1c22SToby Isaac 
6931c58f1c22SToby Isaac   Input Parameters:
6932bb7acecfSBarry Smith + dm   - The `DM` object
6933c58f1c22SToby Isaac - name - The label name
6934c58f1c22SToby Isaac 
6935c58f1c22SToby Isaac   Output Parameter:
6936bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
6937c58f1c22SToby Isaac 
6938c58f1c22SToby Isaac   Level: intermediate
6939c58f1c22SToby Isaac 
69401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6941c58f1c22SToby Isaac @*/
6942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
6943d71ae5a4SJacob Faibussowitsch {
69445d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6945d67d17b1SMatthew G. Knepley   const char *lname;
6946c58f1c22SToby Isaac 
6947c58f1c22SToby Isaac   PetscFunctionBegin;
6948c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6949c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6950534a8f05SLisandro Dalcin   PetscValidBoolPointer(hasLabel, 3);
6951c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
6952c58f1c22SToby Isaac   while (next) {
69539566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
69549566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
6955c58f1c22SToby Isaac     if (*hasLabel) break;
6956c58f1c22SToby Isaac     next = next->next;
6957c58f1c22SToby Isaac   }
69583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6959c58f1c22SToby Isaac }
6960c58f1c22SToby Isaac 
6961c58f1c22SToby Isaac /*@C
696220f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
6963c58f1c22SToby Isaac 
6964c58f1c22SToby Isaac   Not Collective
6965c58f1c22SToby Isaac 
6966c58f1c22SToby Isaac   Input Parameters:
6967bb7acecfSBarry Smith + dm   - The `DM` object
6968c58f1c22SToby Isaac - name - The label name
6969c58f1c22SToby Isaac 
6970c58f1c22SToby Isaac   Output Parameter:
697120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
6972c58f1c22SToby Isaac 
6973bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
6974bb7acecfSBarry Smith +   "depth"       - Holds the depth (co-dimension) of each mesh point
6975bb7acecfSBarry Smith .   "celltype"    - Holds the topological type of each cell
6976bb7acecfSBarry Smith .   "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
6977bb7acecfSBarry Smith .   "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
6978bb7acecfSBarry Smith .   "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
6979bb7acecfSBarry Smith -  "Vertex Sets" - Mirrors the vertex sets defined by GMsh
69806d7c9049SMatthew G. Knepley 
6981c58f1c22SToby Isaac   Level: intermediate
6982c58f1c22SToby Isaac 
69831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
6984c58f1c22SToby Isaac @*/
6985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
6986d71ae5a4SJacob Faibussowitsch {
69875d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
6988c58f1c22SToby Isaac   PetscBool   hasLabel;
6989d67d17b1SMatthew G. Knepley   const char *lname;
6990c58f1c22SToby Isaac 
6991c58f1c22SToby Isaac   PetscFunctionBegin;
6992c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6993c58f1c22SToby Isaac   PetscValidCharPointer(name, 2);
6994c58f1c22SToby Isaac   PetscValidPointer(label, 3);
6995c58f1c22SToby Isaac   *label = NULL;
6996c58f1c22SToby Isaac   while (next) {
69979566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
69989566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
6999c58f1c22SToby Isaac     if (hasLabel) {
7000c58f1c22SToby Isaac       *label = next->label;
7001c58f1c22SToby Isaac       break;
7002c58f1c22SToby Isaac     }
7003c58f1c22SToby Isaac     next = next->next;
7004c58f1c22SToby Isaac   }
70053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7006c58f1c22SToby Isaac }
7007c58f1c22SToby Isaac 
7008c58f1c22SToby Isaac /*@C
7009bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7010c58f1c22SToby Isaac 
7011c58f1c22SToby Isaac   Not Collective
7012c58f1c22SToby Isaac 
7013c58f1c22SToby Isaac   Input Parameters:
7014bb7acecfSBarry Smith + dm - The `DM` object
7015c58f1c22SToby Isaac - n  - the label number
7016c58f1c22SToby Isaac 
7017c58f1c22SToby Isaac   Output Parameter:
7018c58f1c22SToby Isaac . label - the label
7019c58f1c22SToby Isaac 
7020c58f1c22SToby Isaac   Level: intermediate
7021c58f1c22SToby Isaac 
70221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7023c58f1c22SToby Isaac @*/
7024d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7025d71ae5a4SJacob Faibussowitsch {
70265d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7027c58f1c22SToby Isaac   PetscInt    l    = 0;
7028c58f1c22SToby Isaac 
7029c58f1c22SToby Isaac   PetscFunctionBegin;
7030c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7031c58f1c22SToby Isaac   PetscValidPointer(label, 3);
7032c58f1c22SToby Isaac   while (next) {
7033c58f1c22SToby Isaac     if (l == n) {
7034c58f1c22SToby Isaac       *label = next->label;
70353ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7036c58f1c22SToby Isaac     }
7037c58f1c22SToby Isaac     ++l;
7038c58f1c22SToby Isaac     next = next->next;
7039c58f1c22SToby Isaac   }
704063a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7041c58f1c22SToby Isaac }
7042c58f1c22SToby Isaac 
7043c58f1c22SToby Isaac /*@C
7044bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7045c58f1c22SToby Isaac 
7046c58f1c22SToby Isaac   Not Collective
7047c58f1c22SToby Isaac 
7048c58f1c22SToby Isaac   Input Parameters:
7049bb7acecfSBarry Smith + dm   - The `DM` object
7050bb7acecfSBarry Smith - label - The `DMLabel`
7051c58f1c22SToby Isaac 
7052c58f1c22SToby Isaac   Level: developer
7053c58f1c22SToby Isaac 
70541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7055c58f1c22SToby Isaac @*/
7056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7057d71ae5a4SJacob Faibussowitsch {
70585d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7059c58f1c22SToby Isaac   PetscBool   hasLabel;
7060d67d17b1SMatthew G. Knepley   const char *lname;
70615d80c0bfSVaclav Hapla   PetscBool   flg;
7062c58f1c22SToby Isaac 
7063c58f1c22SToby Isaac   PetscFunctionBegin;
7064c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
70669566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
70677a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
70689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7069c58f1c22SToby Isaac   tmpLabel->label  = label;
7070c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
70715d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
70725d80c0bfSVaclav Hapla   *p = tmpLabel;
70739566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
70749566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
70755d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
70769566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7077ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
70783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7079c58f1c22SToby Isaac }
7080c58f1c22SToby Isaac 
7081c58f1c22SToby Isaac /*@C
70824a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
70834a7ee7d0SMatthew G. Knepley 
70844a7ee7d0SMatthew G. Knepley   Not Collective
70854a7ee7d0SMatthew G. Knepley 
70864a7ee7d0SMatthew G. Knepley   Input Parameters:
7087bb7acecfSBarry Smith + dm    - The `DM` object
7088bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
70894a7ee7d0SMatthew G. Knepley 
7090bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7091bb7acecfSBarry Smith +  "depth"       - Holds the depth (co-dimension) of each mesh point
7092bb7acecfSBarry Smith .  "celltype"    - Holds the topological type of each cell
7093bb7acecfSBarry Smith .  "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7094bb7acecfSBarry Smith .  "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7095bb7acecfSBarry Smith .  "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7096bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
70974a7ee7d0SMatthew G. Knepley 
70984a7ee7d0SMatthew G. Knepley   Level: intermediate
70994a7ee7d0SMatthew G. Knepley 
71001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
71014a7ee7d0SMatthew G. Knepley @*/
7102d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7103d71ae5a4SJacob Faibussowitsch {
71044a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
71054a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
71064a7ee7d0SMatthew G. Knepley   const char *name, *lname;
71074a7ee7d0SMatthew G. Knepley 
71084a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
71094a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71104a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
71119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
71124a7ee7d0SMatthew G. Knepley   while (next) {
71139566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71149566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
71154a7ee7d0SMatthew G. Knepley     if (hasLabel) {
71169566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
71179566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
71184a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
71199566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
71204a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
71219566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
71224a7ee7d0SMatthew G. Knepley       next->label = label;
71234a7ee7d0SMatthew G. Knepley       break;
71244a7ee7d0SMatthew G. Knepley     }
71254a7ee7d0SMatthew G. Knepley     next = next->next;
71264a7ee7d0SMatthew G. Knepley   }
71273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71284a7ee7d0SMatthew G. Knepley }
71294a7ee7d0SMatthew G. Knepley 
71304a7ee7d0SMatthew G. Knepley /*@C
7131bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7132c58f1c22SToby Isaac 
7133c58f1c22SToby Isaac   Not Collective
7134c58f1c22SToby Isaac 
7135c58f1c22SToby Isaac   Input Parameters:
7136bb7acecfSBarry Smith + dm   - The `DM` object
7137c58f1c22SToby Isaac - name - The label name
7138c58f1c22SToby Isaac 
7139c58f1c22SToby Isaac   Output Parameter:
714020f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7141bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7142c58f1c22SToby Isaac 
7143c58f1c22SToby Isaac   Level: developer
7144c58f1c22SToby Isaac 
71451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7146c58f1c22SToby Isaac @*/
7147d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7148d71ae5a4SJacob Faibussowitsch {
714995d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7150c58f1c22SToby Isaac   PetscBool   hasLabel;
7151d67d17b1SMatthew G. Knepley   const char *lname;
7152c58f1c22SToby Isaac 
7153c58f1c22SToby Isaac   PetscFunctionBegin;
7154c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7155e5472504SVaclav Hapla   PetscValidCharPointer(name, 2);
7156e5472504SVaclav Hapla   if (label) {
7157e5472504SVaclav Hapla     PetscValidPointer(label, 3);
7158c58f1c22SToby Isaac     *label = NULL;
7159e5472504SVaclav Hapla   }
71605d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
71619566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
71629566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7163c58f1c22SToby Isaac     if (hasLabel) {
716495d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
71659566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
716695d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
71679566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7168ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
716995d578d6SVaclav Hapla       if (label) *label = link->label;
71709566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
71719566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7172c58f1c22SToby Isaac       break;
7173c58f1c22SToby Isaac     }
7174c58f1c22SToby Isaac   }
71753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7176c58f1c22SToby Isaac }
7177c58f1c22SToby Isaac 
7178306894acSVaclav Hapla /*@
7179bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7180306894acSVaclav Hapla 
7181306894acSVaclav Hapla   Not Collective
7182306894acSVaclav Hapla 
7183306894acSVaclav Hapla   Input Parameters:
7184bb7acecfSBarry Smith + dm   - The `DM` object
7185bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM`
718620f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7187306894acSVaclav Hapla 
7188306894acSVaclav Hapla   Level: developer
7189306894acSVaclav Hapla 
7190bb7acecfSBarry Smith   Note:
7191306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7192bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7193306894acSVaclav Hapla   *label nullified.
7194306894acSVaclav Hapla 
71951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7196306894acSVaclav Hapla @*/
7197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7198d71ae5a4SJacob Faibussowitsch {
719943e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7200306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7201306894acSVaclav Hapla 
7202306894acSVaclav Hapla   PetscFunctionBegin;
7203306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7204306894acSVaclav Hapla   PetscValidPointer(label, 2);
72053ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7206306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7207306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
72085d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
720943e45a93SVaclav Hapla     if (*label == link->label) {
7210306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
721143e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7212306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7213ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
721443e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
72159566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
72169566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7217306894acSVaclav Hapla       break;
7218306894acSVaclav Hapla     }
7219306894acSVaclav Hapla   }
72207a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
72213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7222306894acSVaclav Hapla }
7223306894acSVaclav Hapla 
7224c58f1c22SToby Isaac /*@C
7225c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7226c58f1c22SToby Isaac 
7227c58f1c22SToby Isaac   Not Collective
7228c58f1c22SToby Isaac 
7229c58f1c22SToby Isaac   Input Parameters:
7230bb7acecfSBarry Smith + dm   - The `DM` object
7231c58f1c22SToby Isaac - name - The label name
7232c58f1c22SToby Isaac 
7233c58f1c22SToby Isaac   Output Parameter:
7234c58f1c22SToby Isaac . output - The flag for output
7235c58f1c22SToby Isaac 
7236c58f1c22SToby Isaac   Level: developer
7237c58f1c22SToby Isaac 
72381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7239c58f1c22SToby Isaac @*/
7240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7241d71ae5a4SJacob Faibussowitsch {
72425d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7243d67d17b1SMatthew G. Knepley   const char *lname;
7244c58f1c22SToby Isaac 
7245c58f1c22SToby Isaac   PetscFunctionBegin;
7246c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7247dadcf809SJacob Faibussowitsch   PetscValidCharPointer(name, 2);
7248dadcf809SJacob Faibussowitsch   PetscValidBoolPointer(output, 3);
7249c58f1c22SToby Isaac   while (next) {
7250c58f1c22SToby Isaac     PetscBool flg;
7251c58f1c22SToby Isaac 
72529566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72539566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
72549371c9d4SSatish Balay     if (flg) {
72559371c9d4SSatish Balay       *output = next->output;
72563ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
72579371c9d4SSatish Balay     }
7258c58f1c22SToby Isaac     next = next->next;
7259c58f1c22SToby Isaac   }
726098921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7261c58f1c22SToby Isaac }
7262c58f1c22SToby Isaac 
7263c58f1c22SToby Isaac /*@C
7264bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7265c58f1c22SToby Isaac 
7266c58f1c22SToby Isaac   Not Collective
7267c58f1c22SToby Isaac 
7268c58f1c22SToby Isaac   Input Parameters:
7269bb7acecfSBarry Smith + dm     - The `DM` object
7270c58f1c22SToby Isaac . name   - The label name
7271bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7272c58f1c22SToby Isaac 
7273c58f1c22SToby Isaac   Level: developer
7274c58f1c22SToby Isaac 
72751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7276c58f1c22SToby Isaac @*/
7277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7278d71ae5a4SJacob Faibussowitsch {
72795d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7280d67d17b1SMatthew G. Knepley   const char *lname;
7281c58f1c22SToby Isaac 
7282c58f1c22SToby Isaac   PetscFunctionBegin;
7283c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7284534a8f05SLisandro Dalcin   PetscValidCharPointer(name, 2);
7285c58f1c22SToby Isaac   while (next) {
7286c58f1c22SToby Isaac     PetscBool flg;
7287c58f1c22SToby Isaac 
72889566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72899566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
72909371c9d4SSatish Balay     if (flg) {
72919371c9d4SSatish Balay       next->output = output;
72923ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
72939371c9d4SSatish Balay     }
7294c58f1c22SToby Isaac     next = next->next;
7295c58f1c22SToby Isaac   }
729698921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7297c58f1c22SToby Isaac }
7298c58f1c22SToby Isaac 
7299c58f1c22SToby Isaac /*@
7300bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7301c58f1c22SToby Isaac 
730220f4b53cSBarry Smith   Collective
7303c58f1c22SToby Isaac 
7304d8d19677SJose E. Roman   Input Parameters:
7305bb7acecfSBarry Smith + dmA - The `DM` object with initial labels
7306bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied
7307bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7308bb7acecfSBarry Smith . all  - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7309bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7310c58f1c22SToby Isaac 
7311c58f1c22SToby Isaac   Level: intermediate
7312c58f1c22SToby Isaac 
7313bb7acecfSBarry Smith   Note:
73142cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7315c58f1c22SToby Isaac 
73161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7317c58f1c22SToby Isaac @*/
7318d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7319d71ae5a4SJacob Faibussowitsch {
73202cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7321c58f1c22SToby Isaac   const char *name;
7322c58f1c22SToby Isaac   PetscBool   flg;
73235d80c0bfSVaclav Hapla   DMLabelLink link;
7324c58f1c22SToby Isaac 
73255d80c0bfSVaclav Hapla   PetscFunctionBegin;
73265d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
73275d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
73285d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
73295d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
73307a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
73313ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
73325d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
73335d80c0bfSVaclav Hapla     label = link->label;
73349566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
73355d80c0bfSVaclav Hapla     if (!all) {
73369566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7337c58f1c22SToby Isaac       if (flg) continue;
73389566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
73397d5acc75SStefano Zampini       if (flg) continue;
73409566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7341ba2698f1SMatthew G. Knepley       if (flg) continue;
73425d80c0bfSVaclav Hapla     }
73439566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
73442cbb9b06SVaclav Hapla     if (labelOld) {
73452cbb9b06SVaclav Hapla       switch (emode) {
7346d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7347d71ae5a4SJacob Faibussowitsch         continue;
7348d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7349d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7350d71ae5a4SJacob Faibussowitsch         break;
7351d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7352d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7353d71ae5a4SJacob Faibussowitsch       default:
7354d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
73552cbb9b06SVaclav Hapla       }
73562cbb9b06SVaclav Hapla     }
73575d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
73589566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
73595d80c0bfSVaclav Hapla     } else {
73605d80c0bfSVaclav Hapla       labelNew = label;
73615d80c0bfSVaclav Hapla     }
73629566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
73639566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7364c58f1c22SToby Isaac   }
73653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7366c58f1c22SToby Isaac }
7367461a15a0SLisandro Dalcin 
7368609dae6eSVaclav Hapla /*@C
7369b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7370609dae6eSVaclav Hapla 
737120f4b53cSBarry Smith   Collective; No Fortran Support
7372609dae6eSVaclav Hapla 
7373609dae6eSVaclav Hapla   Input Parameters:
7374bb7acecfSBarry Smith + dm0 - First `DM` object
7375bb7acecfSBarry Smith - dm1 - Second `DM` object
7376609dae6eSVaclav Hapla 
7377609dae6eSVaclav Hapla   Output Parameters
73785efe38ccSVaclav Hapla + equal   - (Optional) Flag whether labels of dm0 and dm1 are the same
737920f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7380609dae6eSVaclav Hapla 
7381609dae6eSVaclav Hapla   Level: intermediate
7382609dae6eSVaclav Hapla 
7383609dae6eSVaclav Hapla   Notes:
7384bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7385bb7acecfSBarry Smith 
738620f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7387bb7acecfSBarry Smith 
738820f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7389609dae6eSVaclav Hapla 
73905efe38ccSVaclav Hapla   The output message is set independently on each rank.
7391bb7acecfSBarry Smith 
7392bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7393bb7acecfSBarry Smith 
739420f4b53cSBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner.
7395bb7acecfSBarry Smith 
739620f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7397609dae6eSVaclav Hapla 
7398609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7399bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7400609dae6eSVaclav Hapla 
74011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7402609dae6eSVaclav Hapla @*/
7403d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message)
7404d71ae5a4SJacob Faibussowitsch {
74055efe38ccSVaclav Hapla   PetscInt    n, i;
7406609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
74075efe38ccSVaclav Hapla   PetscBool   eq;
7408609dae6eSVaclav Hapla   MPI_Comm    comm;
74095efe38ccSVaclav Hapla   PetscMPIInt rank;
7410609dae6eSVaclav Hapla 
7411609dae6eSVaclav Hapla   PetscFunctionBegin;
7412609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7413609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7414609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
74155efe38ccSVaclav Hapla   if (equal) PetscValidBoolPointer(equal, 3);
7416609dae6eSVaclav Hapla   if (message) PetscValidPointer(message, 4);
74179566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
74189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
74195efe38ccSVaclav Hapla   {
74205efe38ccSVaclav Hapla     PetscInt n1;
74215efe38ccSVaclav Hapla 
74229566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
74239566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
74245efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
742548a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7426712fec58SPierre Jolivet     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
74275efe38ccSVaclav Hapla     if (!eq) goto finish;
74285efe38ccSVaclav Hapla   }
74295efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7430609dae6eSVaclav Hapla     DMLabel     l0, l1;
7431609dae6eSVaclav Hapla     const char *name;
7432609dae6eSVaclav Hapla     char       *msgInner;
7433609dae6eSVaclav Hapla 
7434609dae6eSVaclav Hapla     /* Ignore label order */
74359566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
74369566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
74379566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7438609dae6eSVaclav Hapla     if (!l1) {
743963a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
74405efe38ccSVaclav Hapla       eq = PETSC_FALSE;
74415efe38ccSVaclav Hapla       break;
7442609dae6eSVaclav Hapla     }
74439566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
74449566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
74459566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
74465efe38ccSVaclav Hapla     if (!eq) break;
7447609dae6eSVaclav Hapla   }
7448712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7449609dae6eSVaclav Hapla finish:
74505efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7451609dae6eSVaclav Hapla   if (message) {
7452609dae6eSVaclav Hapla     *message = NULL;
745348a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
74545efe38ccSVaclav Hapla   } else {
745548a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
74569566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
74575efe38ccSVaclav Hapla   }
74585efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
74595efe38ccSVaclav Hapla   if (equal) *equal = eq;
74607a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
74613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7462609dae6eSVaclav Hapla }
7463609dae6eSVaclav Hapla 
7464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7465d71ae5a4SJacob Faibussowitsch {
7466461a15a0SLisandro Dalcin   PetscFunctionBegin;
7467461a15a0SLisandro Dalcin   PetscValidPointer(label, 2);
7468461a15a0SLisandro Dalcin   if (!*label) {
74699566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
74709566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7471461a15a0SLisandro Dalcin   }
74729566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
74733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7474461a15a0SLisandro Dalcin }
7475461a15a0SLisandro Dalcin 
74760fdc7489SMatthew Knepley /*
74770fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
74780fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
74790fdc7489SMatthew Knepley   (label, id) pair in the DM.
74800fdc7489SMatthew Knepley 
74810fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
74820fdc7489SMatthew Knepley   each label.
74830fdc7489SMatthew Knepley */
7484d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7485d71ae5a4SJacob Faibussowitsch {
74860fdc7489SMatthew Knepley   DMUniversalLabel ul;
74870fdc7489SMatthew Knepley   PetscBool       *active;
74880fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
74890fdc7489SMatthew Knepley 
74900fdc7489SMatthew Knepley   PetscFunctionBegin;
74919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
74929566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
74939566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
74949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
74950fdc7489SMatthew Knepley   ul->Nl = 0;
74960fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
74970fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
74980fdc7489SMatthew Knepley     const char *name;
74990fdc7489SMatthew Knepley 
75009566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
75019566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
75029566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
75030fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
75040fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
75050fdc7489SMatthew Knepley   }
75069566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
75070fdc7489SMatthew Knepley   ul->Nv = 0;
75080fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
75090fdc7489SMatthew Knepley     DMLabel     label;
75100fdc7489SMatthew Knepley     PetscInt    nv;
75110fdc7489SMatthew Knepley     const char *name;
75120fdc7489SMatthew Knepley 
75130fdc7489SMatthew Knepley     if (!active[l]) continue;
75149566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
75159566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
75169566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
75179566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
75180fdc7489SMatthew Knepley     ul->indices[m] = l;
75190fdc7489SMatthew Knepley     ul->Nv += nv;
75200fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
75210fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
75220fdc7489SMatthew Knepley     ++m;
75230fdc7489SMatthew Knepley   }
75240fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
75250fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
75260fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
75270fdc7489SMatthew Knepley   }
75280fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
75290fdc7489SMatthew Knepley     PetscInt b;
75300fdc7489SMatthew Knepley 
75310fdc7489SMatthew Knepley     ul->masks[l] = 0;
75320fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
75330fdc7489SMatthew Knepley   }
75349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
75350fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
75360fdc7489SMatthew Knepley     DMLabel         label;
75370fdc7489SMatthew Knepley     IS              valueIS;
75380fdc7489SMatthew Knepley     const PetscInt *varr;
75390fdc7489SMatthew Knepley     PetscInt        nv, v;
75400fdc7489SMatthew Knepley 
75410fdc7489SMatthew Knepley     if (!active[l]) continue;
75429566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
75439566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
75449566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
75459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7546ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
75479566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
75489566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
75499566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
75500fdc7489SMatthew Knepley     ++m;
75510fdc7489SMatthew Knepley   }
75529566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
75530fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
75540fdc7489SMatthew Knepley     PetscInt  uval   = 0;
75550fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
75560fdc7489SMatthew Knepley 
75570fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
75580fdc7489SMatthew Knepley       DMLabel  label;
75590649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
75600fdc7489SMatthew Knepley 
75610fdc7489SMatthew Knepley       if (!active[l]) continue;
75629566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
75639566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
75649566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
75659371c9d4SSatish Balay       if (val == defval) {
75669371c9d4SSatish Balay         ++m;
75679371c9d4SSatish Balay         continue;
75689371c9d4SSatish Balay       }
75690649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
75700fdc7489SMatthew Knepley       marked = PETSC_TRUE;
75719566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
757263a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
75730fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
75740fdc7489SMatthew Knepley       ++m;
75750fdc7489SMatthew Knepley     }
75769566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
75770fdc7489SMatthew Knepley   }
75789566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
75790fdc7489SMatthew Knepley   *universal = ul;
75803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75810fdc7489SMatthew Knepley }
75820fdc7489SMatthew Knepley 
7583d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7584d71ae5a4SJacob Faibussowitsch {
75850fdc7489SMatthew Knepley   PetscInt l;
75860fdc7489SMatthew Knepley 
75870fdc7489SMatthew Knepley   PetscFunctionBegin;
75889566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
75899566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
75909566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
75919566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
75929566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
75930fdc7489SMatthew Knepley   *universal = NULL;
75943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75950fdc7489SMatthew Knepley }
75960fdc7489SMatthew Knepley 
7597d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7598d71ae5a4SJacob Faibussowitsch {
75990fdc7489SMatthew Knepley   PetscFunctionBegin;
76000fdc7489SMatthew Knepley   PetscValidPointer(ulabel, 2);
76010fdc7489SMatthew Knepley   *ulabel = ul->label;
76023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76030fdc7489SMatthew Knepley }
76040fdc7489SMatthew Knepley 
7605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7606d71ae5a4SJacob Faibussowitsch {
76070fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
76080fdc7489SMatthew Knepley 
76090fdc7489SMatthew Knepley   PetscFunctionBegin;
7610064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
76110fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
76129566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
76139566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
76140fdc7489SMatthew Knepley   }
76150fdc7489SMatthew Knepley   if (preserveOrder) {
76160fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
76170fdc7489SMatthew Knepley       const char *name;
76180fdc7489SMatthew Knepley       PetscBool   match;
76190fdc7489SMatthew Knepley 
76209566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
76219566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
762263a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
76230fdc7489SMatthew Knepley     }
76240fdc7489SMatthew Knepley   }
76253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76260fdc7489SMatthew Knepley }
76270fdc7489SMatthew Knepley 
7628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7629d71ae5a4SJacob Faibussowitsch {
76300fdc7489SMatthew Knepley   PetscInt l;
76310fdc7489SMatthew Knepley 
76320fdc7489SMatthew Knepley   PetscFunctionBegin;
76330fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
76340fdc7489SMatthew Knepley     DMLabel  label;
76350fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
76360fdc7489SMatthew Knepley 
76370fdc7489SMatthew Knepley     if (lval) {
76389566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
76399566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
76409566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
76410fdc7489SMatthew Knepley     }
76420fdc7489SMatthew Knepley   }
76433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76440fdc7489SMatthew Knepley }
7645a8fb8f29SToby Isaac 
7646a8fb8f29SToby Isaac /*@
7647bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7648bb7acecfSBarry Smith 
764920f4b53cSBarry Smith   Not Collective
7650a8fb8f29SToby Isaac 
7651a8fb8f29SToby Isaac   Input Parameter:
7652bb7acecfSBarry Smith . dm - The `DM` object
7653a8fb8f29SToby Isaac 
7654a8fb8f29SToby Isaac   Output Parameter:
7655bb7acecfSBarry Smith . cdm - The coarse `DM`
7656a8fb8f29SToby Isaac 
7657a8fb8f29SToby Isaac   Level: intermediate
7658a8fb8f29SToby Isaac 
76591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7660a8fb8f29SToby Isaac @*/
7661d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7662d71ae5a4SJacob Faibussowitsch {
7663a8fb8f29SToby Isaac   PetscFunctionBegin;
7664a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7665a8fb8f29SToby Isaac   PetscValidPointer(cdm, 2);
7666a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
76673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7668a8fb8f29SToby Isaac }
7669a8fb8f29SToby Isaac 
7670a8fb8f29SToby Isaac /*@
7671bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7672a8fb8f29SToby Isaac 
7673a8fb8f29SToby Isaac   Input Parameters:
7674bb7acecfSBarry Smith + dm - The `DM` object
7675bb7acecfSBarry Smith - cdm - The coarse `DM`
7676a8fb8f29SToby Isaac 
7677a8fb8f29SToby Isaac   Level: intermediate
7678a8fb8f29SToby Isaac 
7679bb7acecfSBarry Smith   Note:
7680bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7681bb7acecfSBarry Smith 
76821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7683a8fb8f29SToby Isaac @*/
7684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7685d71ae5a4SJacob Faibussowitsch {
7686a8fb8f29SToby Isaac   PetscFunctionBegin;
7687a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7688a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
768989d734beSBarry Smith   if (dm == cdm) cdm = NULL;
76909566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
76919566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7692a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
76933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7694a8fb8f29SToby Isaac }
7695a8fb8f29SToby Isaac 
769688bdff64SToby Isaac /*@
7697bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
769888bdff64SToby Isaac 
769988bdff64SToby Isaac   Input Parameter:
7700bb7acecfSBarry Smith . dm - The `DM` object
770188bdff64SToby Isaac 
770288bdff64SToby Isaac   Output Parameter:
7703bb7acecfSBarry Smith . fdm - The fine `DM`
770488bdff64SToby Isaac 
770588bdff64SToby Isaac   Level: intermediate
770688bdff64SToby Isaac 
77071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
770888bdff64SToby Isaac @*/
7709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7710d71ae5a4SJacob Faibussowitsch {
771188bdff64SToby Isaac   PetscFunctionBegin;
771288bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
771388bdff64SToby Isaac   PetscValidPointer(fdm, 2);
771488bdff64SToby Isaac   *fdm = dm->fineMesh;
77153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771688bdff64SToby Isaac }
771788bdff64SToby Isaac 
771888bdff64SToby Isaac /*@
7719bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
772088bdff64SToby Isaac 
772188bdff64SToby Isaac   Input Parameters:
7722bb7acecfSBarry Smith + dm - The `DM` object
7723bb7acecfSBarry Smith - fdm - The fine `DM`
772488bdff64SToby Isaac 
7725bb7acecfSBarry Smith   Level: developer
772688bdff64SToby Isaac 
7727bb7acecfSBarry Smith   Note:
7728bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7729bb7acecfSBarry Smith 
77301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
773188bdff64SToby Isaac @*/
7732d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7733d71ae5a4SJacob Faibussowitsch {
773488bdff64SToby Isaac   PetscFunctionBegin;
773588bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
773688bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
773789d734beSBarry Smith   if (dm == fdm) fdm = NULL;
77389566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
77399566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
774088bdff64SToby Isaac   dm->fineMesh = fdm;
77413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774288bdff64SToby Isaac }
774388bdff64SToby Isaac 
7744a6ba4734SToby Isaac /*@C
7745bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7746a6ba4734SToby Isaac 
774720f4b53cSBarry Smith   Collective
7748783e2ec8SMatthew G. Knepley 
7749a6ba4734SToby Isaac   Input Parameters:
7750bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7751bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7752a6ba4734SToby Isaac . name     - The BC name
775345480ffeSMatthew G. Knepley . label    - The label defining constrained points
7754bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
775545480ffeSMatthew G. Knepley . values   - An array of values for constrained points
7756a6ba4734SToby Isaac . field    - The field to constrain
775745480ffeSMatthew G. Knepley . Nc       - The number of constrained field components (0 will constrain all fields)
7758a6ba4734SToby Isaac . comps    - An array of constrained component numbers
7759a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
776056cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
7761a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
7762a6ba4734SToby Isaac 
776345480ffeSMatthew G. Knepley   Output Parameter:
776445480ffeSMatthew G. Knepley . bd          - (Optional) Boundary number
776545480ffeSMatthew G. Knepley 
7766a6ba4734SToby Isaac   Options Database Keys:
7767a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids
7768a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
7769a6ba4734SToby Isaac 
777020f4b53cSBarry Smith   Level: intermediate
777120f4b53cSBarry Smith 
7772bb7acecfSBarry Smith   Notes:
777337fdd005SBarry Smith   Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
777456cf3b9cSMatthew G. Knepley 
777520f4b53cSBarry Smith $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
777656cf3b9cSMatthew G. Knepley 
7777bb7acecfSBarry Smith   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is:
777856cf3b9cSMatthew G. Knepley 
777920f4b53cSBarry Smith .vb
778020f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
778120f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
778220f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
778320f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
778420f4b53cSBarry Smith .ve
778556cf3b9cSMatthew G. Knepley + dim - the spatial dimension
778656cf3b9cSMatthew G. Knepley . Nf - the number of fields
778756cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
778856cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
778956cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
779056cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
779156cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
779256cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
779356cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
779456cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
779556cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
779656cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
779756cf3b9cSMatthew G. Knepley . t - current time
779856cf3b9cSMatthew G. Knepley . x - coordinates of the current point
779956cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
780056cf3b9cSMatthew G. Knepley . constants - constant parameters
780156cf3b9cSMatthew G. Knepley - bcval - output values at the current point
780256cf3b9cSMatthew G. Knepley 
78031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
7804a6ba4734SToby Isaac @*/
7805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
7806d71ae5a4SJacob Faibussowitsch {
7807e5e52638SMatthew G. Knepley   PetscDS ds;
7808a6ba4734SToby Isaac 
7809a6ba4734SToby Isaac   PetscFunctionBegin;
7810a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7811783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
781245480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
781345480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
781445480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
781545480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
781601a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
78179566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7818799db056SMatthew G. Knepley   /* Complete label */
7819799db056SMatthew G. Knepley   if (label) {
7820799db056SMatthew G. Knepley     PetscObject  obj;
7821799db056SMatthew G. Knepley     PetscClassId id;
7822799db056SMatthew G. Knepley 
7823799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
7824799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
7825799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
7826799db056SMatthew G. Knepley       DM plex;
7827799db056SMatthew G. Knepley 
7828799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
7829799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
7830799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
7831799db056SMatthew G. Knepley     }
7832799db056SMatthew G. Knepley   }
78339566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
78343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7835a6ba4734SToby Isaac }
7836a6ba4734SToby Isaac 
783745480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
7838d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
7839d71ae5a4SJacob Faibussowitsch {
7840e5e52638SMatthew G. Knepley   PetscDS     ds;
7841dff059c6SToby Isaac   DMBoundary *lastnext;
7842e6f8dbb6SToby Isaac   DSBoundary  dsbound;
7843e6f8dbb6SToby Isaac 
7844e6f8dbb6SToby Isaac   PetscFunctionBegin;
78459566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
7846e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
784747a1f5adSToby Isaac   if (dm->boundary) {
784847a1f5adSToby Isaac     DMBoundary next = dm->boundary;
784947a1f5adSToby Isaac 
785047a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
78513ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
785247a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
785347a1f5adSToby Isaac     while (next) {
785447a1f5adSToby Isaac       DMBoundary b = next;
785547a1f5adSToby Isaac 
785647a1f5adSToby Isaac       next = b->next;
78579566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
7858a6ba4734SToby Isaac     }
785947a1f5adSToby Isaac     dm->boundary = NULL;
7860a6ba4734SToby Isaac   }
786147a1f5adSToby Isaac 
7862dff059c6SToby Isaac   lastnext = &(dm->boundary);
7863e6f8dbb6SToby Isaac   while (dsbound) {
7864e6f8dbb6SToby Isaac     DMBoundary dmbound;
7865e6f8dbb6SToby Isaac 
78669566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
7867e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
786845480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
786947a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
7870dff059c6SToby Isaac     *lastnext = dmbound;
7871dff059c6SToby Isaac     lastnext  = &(dmbound->next);
7872dff059c6SToby Isaac     dsbound   = dsbound->next;
7873a6ba4734SToby Isaac   }
78743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7875a6ba4734SToby Isaac }
7876a6ba4734SToby Isaac 
7877bb7acecfSBarry Smith /* TODO: missing manual page */
7878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
7879d71ae5a4SJacob Faibussowitsch {
7880b95f2879SToby Isaac   DMBoundary b;
7881a6ba4734SToby Isaac 
7882a6ba4734SToby Isaac   PetscFunctionBegin;
7883a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7884534a8f05SLisandro Dalcin   PetscValidBoolPointer(isBd, 3);
7885a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
78869566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
7887b95f2879SToby Isaac   b = dm->boundary;
7888a6ba4734SToby Isaac   while (b && !(*isBd)) {
7889e6f8dbb6SToby Isaac     DMLabel    label = b->label;
7890e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
7891a6ba4734SToby Isaac     PetscInt   i;
7892a6ba4734SToby Isaac 
789345480ffeSMatthew G. Knepley     if (label) {
78949566063dSJacob Faibussowitsch       for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
7895a6ba4734SToby Isaac     }
7896a6ba4734SToby Isaac     b = b->next;
7897a6ba4734SToby Isaac   }
78983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7899a6ba4734SToby Isaac }
79004d6f44ffSToby Isaac 
79014d6f44ffSToby Isaac /*@C
7902bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
7903a6e0b375SMatthew G. Knepley 
790420f4b53cSBarry Smith   Collective
79054d6f44ffSToby Isaac 
79064d6f44ffSToby Isaac   Input Parameters:
7907bb7acecfSBarry Smith + dm      - The `DM`
79080709b2feSToby Isaac . time    - The time
79094d6f44ffSToby Isaac . funcs   - The coordinate functions to evaluate, one per field
79104d6f44ffSToby Isaac . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
79114d6f44ffSToby Isaac - mode    - The insertion mode for values
79124d6f44ffSToby Isaac 
79134d6f44ffSToby Isaac   Output Parameter:
79144d6f44ffSToby Isaac . X - vector
79154d6f44ffSToby Isaac 
791620f4b53cSBarry Smith    Calling sequence of `funcs`:
791720f4b53cSBarry Smith $  PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
79184d6f44ffSToby Isaac +  dim - The spatial dimension
79198ec8862eSJed Brown .  time - The time at which to sample
79204d6f44ffSToby Isaac .  x   - The coordinates
792177b739a6SMatthew Knepley .  Nc  - The number of components
79224d6f44ffSToby Isaac .  u   - The output field values
79234d6f44ffSToby Isaac -  ctx - optional user-defined function context
79244d6f44ffSToby Isaac 
79254d6f44ffSToby Isaac   Level: developer
79264d6f44ffSToby Isaac 
7927bb7acecfSBarry Smith   Developer Notes:
7928bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
7929bb7acecfSBarry Smith 
7930bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
7931bb7acecfSBarry Smith 
79321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
79334d6f44ffSToby Isaac @*/
7934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X)
7935d71ae5a4SJacob Faibussowitsch {
79364d6f44ffSToby Isaac   Vec localX;
79374d6f44ffSToby Isaac 
79384d6f44ffSToby Isaac   PetscFunctionBegin;
79394d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7940708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
79419566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
7942f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
79439566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
79449566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
79459566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
79469566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
7947708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
79483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79494d6f44ffSToby Isaac }
79504d6f44ffSToby Isaac 
7951a6e0b375SMatthew G. Knepley /*@C
7952bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
7953a6e0b375SMatthew G. Knepley 
795420f4b53cSBarry Smith   Not Collective
7955a6e0b375SMatthew G. Knepley 
7956a6e0b375SMatthew G. Knepley   Input Parameters:
7957bb7acecfSBarry Smith + dm      - The `DM`
7958a6e0b375SMatthew G. Knepley . time    - The time
7959a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
7960a6e0b375SMatthew G. Knepley . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
7961a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
7962a6e0b375SMatthew G. Knepley 
7963a6e0b375SMatthew G. Knepley   Output Parameter:
7964a6e0b375SMatthew G. Knepley . localX - vector
7965a6e0b375SMatthew G. Knepley 
796620f4b53cSBarry Smith    Calling sequence of `funcs`:
796720f4b53cSBarry Smith $  PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
7968a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
7969a6e0b375SMatthew G. Knepley .  x   - The coordinates
797077b739a6SMatthew Knepley .  Nc  - The number of components
7971a6e0b375SMatthew G. Knepley .  u   - The output field values
7972a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
7973a6e0b375SMatthew G. Knepley 
7974a6e0b375SMatthew G. Knepley   Level: developer
7975a6e0b375SMatthew G. Knepley 
7976bb7acecfSBarry Smith   Developer Notes:
7977bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
7978bb7acecfSBarry Smith 
7979bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
7980bb7acecfSBarry Smith 
79811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
7982a6e0b375SMatthew G. Knepley @*/
7983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
7984d71ae5a4SJacob Faibussowitsch {
79854d6f44ffSToby Isaac   PetscFunctionBegin;
79864d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7987064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
79889566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfunctionlocal)(dm, time, funcs, ctxs, mode, localX));
79893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
79904d6f44ffSToby Isaac }
79914d6f44ffSToby Isaac 
7992a6e0b375SMatthew G. Knepley /*@C
7993bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
7994a6e0b375SMatthew G. Knepley 
799520f4b53cSBarry Smith   Collective
7996a6e0b375SMatthew G. Knepley 
7997a6e0b375SMatthew G. Knepley   Input Parameters:
7998bb7acecfSBarry Smith + dm      - The `DM`
7999a6e0b375SMatthew G. Knepley . time    - The time
8000bb7acecfSBarry Smith . label   - The `DMLabel` selecting the portion of the mesh for projection
8001a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
8002bb7acecfSBarry Smith . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8003a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8004a6e0b375SMatthew G. Knepley 
8005a6e0b375SMatthew G. Knepley   Output Parameter:
8006a6e0b375SMatthew G. Knepley . X - vector
8007a6e0b375SMatthew G. Knepley 
800820f4b53cSBarry Smith    Calling sequence of `funcs`:
800920f4b53cSBarry Smith $  PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
8010a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
8011a6e0b375SMatthew G. Knepley .  x   - The coordinates
801277b739a6SMatthew Knepley .  Nc  - The number of components
8013a6e0b375SMatthew G. Knepley .  u   - The output field values
8014a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
8015a6e0b375SMatthew G. Knepley 
8016a6e0b375SMatthew G. Knepley   Level: developer
8017a6e0b375SMatthew G. Knepley 
8018bb7acecfSBarry Smith   Developer Notes:
8019bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8020bb7acecfSBarry Smith 
8021bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8022bb7acecfSBarry Smith 
80231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8024a6e0b375SMatthew G. Knepley @*/
8025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X)
8026d71ae5a4SJacob Faibussowitsch {
80272c53366bSMatthew G. Knepley   Vec localX;
80282c53366bSMatthew G. Knepley 
80292c53366bSMatthew G. Knepley   PetscFunctionBegin;
80302c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
80319566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8032f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
80339566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
80349566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
80359566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
80369566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
80373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
80382c53366bSMatthew G. Knepley }
80392c53366bSMatthew G. Knepley 
8040a6e0b375SMatthew G. Knepley /*@C
8041bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8042a6e0b375SMatthew G. Knepley 
804320f4b53cSBarry Smith   Not Collective
8044a6e0b375SMatthew G. Knepley 
8045a6e0b375SMatthew G. Knepley   Input Parameters:
8046bb7acecfSBarry Smith + dm      - The `DM`
8047a6e0b375SMatthew G. Knepley . time    - The time
8048bb7acecfSBarry Smith . label   - The `DMLabel` selecting the portion of the mesh for projection
8049a6e0b375SMatthew G. Knepley . funcs   - The coordinate functions to evaluate, one per field
8050a6e0b375SMatthew G. Knepley . ctxs    - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8051a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8052a6e0b375SMatthew G. Knepley 
8053a6e0b375SMatthew G. Knepley   Output Parameter:
8054a6e0b375SMatthew G. Knepley . localX - vector
8055a6e0b375SMatthew G. Knepley 
805620f4b53cSBarry Smith    Calling sequence of `funcs`:
805720f4b53cSBarry Smith $  PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx);
8058a6e0b375SMatthew G. Knepley +  dim - The spatial dimension
8059a6e0b375SMatthew G. Knepley .  x   - The coordinates
806077b739a6SMatthew Knepley .  Nc  - The number of components
8061a6e0b375SMatthew G. Knepley .  u   - The output field values
8062a6e0b375SMatthew G. Knepley -  ctx - optional user-defined function context
8063a6e0b375SMatthew G. Knepley 
8064a6e0b375SMatthew G. Knepley   Level: developer
8065a6e0b375SMatthew G. Knepley 
8066bb7acecfSBarry Smith   Developer Notes:
8067bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8068bb7acecfSBarry Smith 
8069bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8070bb7acecfSBarry Smith 
80711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8072a6e0b375SMatthew G. Knepley @*/
8073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX)
8074d71ae5a4SJacob Faibussowitsch {
80754d6f44ffSToby Isaac   PetscFunctionBegin;
80764d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8077064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
80789566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfunctionlabellocal)(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
80793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
80804d6f44ffSToby Isaac }
80812716604bSToby Isaac 
8082a6e0b375SMatthew G. Knepley /*@C
8083bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8084a6e0b375SMatthew G. Knepley 
808520f4b53cSBarry Smith   Not Collective
8086a6e0b375SMatthew G. Knepley 
8087a6e0b375SMatthew G. Knepley   Input Parameters:
8088bb7acecfSBarry Smith + dm      - The `DM`
8089a6e0b375SMatthew G. Knepley . time    - The time
809020f4b53cSBarry Smith . localU  - The input field vector; may be `NULL` if projection is defined purely by coordinates
8091a6e0b375SMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8092a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8093a6e0b375SMatthew G. Knepley 
8094a6e0b375SMatthew G. Knepley   Output Parameter:
8095a6e0b375SMatthew G. Knepley . localX  - The output vector
8096a6e0b375SMatthew G. Knepley 
809720f4b53cSBarry Smith    Calling sequence of `funcs`:
809820f4b53cSBarry Smith .vb
809920f4b53cSBarry Smith    void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux,
810020f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
810120f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
810220f4b53cSBarry Smith               PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
810320f4b53cSBarry Smith .ve
8104a6e0b375SMatthew G. Knepley +  dim          - The spatial dimension
8105a6e0b375SMatthew G. Knepley .  Nf           - The number of input fields
8106a6e0b375SMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8107a6e0b375SMatthew G. Knepley .  uOff         - The offset of each field in u[]
8108a6e0b375SMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8109a6e0b375SMatthew G. Knepley .  u            - The field values at this point in space
8110a6e0b375SMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8111a6e0b375SMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8112a6e0b375SMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8113a6e0b375SMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8114a6e0b375SMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8115a6e0b375SMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8116a6e0b375SMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8117a6e0b375SMatthew G. Knepley .  t            - The current time
8118a6e0b375SMatthew G. Knepley .  x            - The coordinates of this point
8119a6e0b375SMatthew G. Knepley .  numConstants - The number of constants
8120a6e0b375SMatthew G. Knepley .  constants    - The value of each constant
8121a6e0b375SMatthew G. Knepley -  f            - The value of the function at this point in space
8122a6e0b375SMatthew G. Knepley 
8123bb7acecfSBarry Smith   Note:
8124bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8125bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8126bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8127a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8128a6e0b375SMatthew G. Knepley 
8129a6e0b375SMatthew G. Knepley   Level: intermediate
8130a6e0b375SMatthew G. Knepley 
8131bb7acecfSBarry Smith   Developer Notes:
8132bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8133bb7acecfSBarry Smith 
8134bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8135bb7acecfSBarry Smith 
81361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8137a6e0b375SMatthew G. Knepley @*/
8138d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8139d71ae5a4SJacob Faibussowitsch {
81408c6c5593SMatthew G. Knepley   PetscFunctionBegin;
81418c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8142eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
81438c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
81449566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfieldlocal)(dm, time, localU, funcs, mode, localX));
81453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81468c6c5593SMatthew G. Knepley }
81478c6c5593SMatthew G. Knepley 
8148a6e0b375SMatthew G. Knepley /*@C
8149a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8150a6e0b375SMatthew G. Knepley 
815120f4b53cSBarry Smith   Not Collective
8152a6e0b375SMatthew G. Knepley 
8153a6e0b375SMatthew G. Knepley   Input Parameters:
8154bb7acecfSBarry Smith + dm      - The `DM`
8155a6e0b375SMatthew G. Knepley . time    - The time
8156bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain to output
8157a6e0b375SMatthew G. Knepley . numIds  - The number of label ids to use
8158a6e0b375SMatthew G. Knepley . ids     - The label ids to use for marking
8159bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
816020f4b53cSBarry Smith . comps   - The components to set in the output, or `NULL` for all components
8161a6e0b375SMatthew G. Knepley . localU  - The input field vector
8162a6e0b375SMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8163a6e0b375SMatthew G. Knepley - mode    - The insertion mode for values
8164a6e0b375SMatthew G. Knepley 
8165a6e0b375SMatthew G. Knepley   Output Parameter:
8166a6e0b375SMatthew G. Knepley . localX  - The output vector
8167a6e0b375SMatthew G. Knepley 
816820f4b53cSBarry Smith    Calling sequence of `funcs`:
816920f4b53cSBarry Smith .vb
817020f4b53cSBarry Smith    void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux,
817120f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
817220f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
817320f4b53cSBarry Smith               PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
817420f4b53cSBarry Smith .ve
8175a6e0b375SMatthew G. Knepley +  dim          - The spatial dimension
8176a6e0b375SMatthew G. Knepley .  Nf           - The number of input fields
8177a6e0b375SMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8178a6e0b375SMatthew G. Knepley .  uOff         - The offset of each field in u[]
8179a6e0b375SMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8180a6e0b375SMatthew G. Knepley .  u            - The field values at this point in space
8181a6e0b375SMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8182a6e0b375SMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8183a6e0b375SMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8184a6e0b375SMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8185a6e0b375SMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8186a6e0b375SMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8187a6e0b375SMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8188a6e0b375SMatthew G. Knepley .  t            - The current time
8189a6e0b375SMatthew G. Knepley .  x            - The coordinates of this point
8190a6e0b375SMatthew G. Knepley .  numConstants - The number of constants
8191a6e0b375SMatthew G. Knepley .  constants    - The value of each constant
8192a6e0b375SMatthew G. Knepley -  f            - The value of the function at this point in space
8193a6e0b375SMatthew G. Knepley 
8194bb7acecfSBarry Smith   Note:
8195bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8196bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8197bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8198a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8199a6e0b375SMatthew G. Knepley 
8200a6e0b375SMatthew G. Knepley   Level: intermediate
8201a6e0b375SMatthew G. Knepley 
8202bb7acecfSBarry Smith   Developer Notes:
8203bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8204bb7acecfSBarry Smith 
8205bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8206bb7acecfSBarry Smith 
82071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8208a6e0b375SMatthew G. Knepley @*/
8209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8210d71ae5a4SJacob Faibussowitsch {
82118c6c5593SMatthew G. Knepley   PetscFunctionBegin;
82128c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8213064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8214064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
82159566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
82163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82178c6c5593SMatthew G. Knepley }
82188c6c5593SMatthew G. Knepley 
82192716604bSToby Isaac /*@C
8220d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8221d29d7c6eSMatthew G. Knepley 
822220f4b53cSBarry Smith   Not Collective
8223d29d7c6eSMatthew G. Knepley 
8224d29d7c6eSMatthew G. Knepley   Input Parameters:
8225bb7acecfSBarry Smith + dm      - The `DM`
8226d29d7c6eSMatthew G. Knepley . time    - The time
8227bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain to output
8228d29d7c6eSMatthew G. Knepley . numIds  - The number of label ids to use
8229d29d7c6eSMatthew G. Knepley . ids     - The label ids to use for marking
8230bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
823120f4b53cSBarry Smith . comps   - The components to set in the output, or `NULL` for all components
8232d29d7c6eSMatthew G. Knepley . U       - The input field vector
8233d29d7c6eSMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8234d29d7c6eSMatthew G. Knepley - mode    - The insertion mode for values
8235d29d7c6eSMatthew G. Knepley 
8236d29d7c6eSMatthew G. Knepley   Output Parameter:
8237d29d7c6eSMatthew G. Knepley . X       - The output vector
8238d29d7c6eSMatthew G. Knepley 
823920f4b53cSBarry Smith    Calling sequence of `funcs`:
824020f4b53cSBarry Smith .vb
824120f4b53cSBarry Smith   void func(PetscInt dim, PetscInt Nf, PetscInt NfAux,
824220f4b53cSBarry Smith             const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
824320f4b53cSBarry Smith             const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
824420f4b53cSBarry Smith             PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
824520f4b53cSBarry Smith .ve
8246d29d7c6eSMatthew G. Knepley +  dim          - The spatial dimension
8247d29d7c6eSMatthew G. Knepley .  Nf           - The number of input fields
8248d29d7c6eSMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8249d29d7c6eSMatthew G. Knepley .  uOff         - The offset of each field in u[]
8250d29d7c6eSMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8251d29d7c6eSMatthew G. Knepley .  u            - The field values at this point in space
8252d29d7c6eSMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8253d29d7c6eSMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8254d29d7c6eSMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8255d29d7c6eSMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8256d29d7c6eSMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8257d29d7c6eSMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8258d29d7c6eSMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8259d29d7c6eSMatthew G. Knepley .  t            - The current time
8260d29d7c6eSMatthew G. Knepley .  x            - The coordinates of this point
8261d29d7c6eSMatthew G. Knepley .  numConstants - The number of constants
8262d29d7c6eSMatthew G. Knepley .  constants    - The value of each constant
8263d29d7c6eSMatthew G. Knepley -  f            - The value of the function at this point in space
8264d29d7c6eSMatthew G. Knepley 
8265bb7acecfSBarry Smith   Note:
8266bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8267bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8268bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8269d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8270d29d7c6eSMatthew G. Knepley 
8271d29d7c6eSMatthew G. Knepley   Level: intermediate
8272d29d7c6eSMatthew G. Knepley 
8273bb7acecfSBarry Smith   Developer Notes:
8274bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8275bb7acecfSBarry Smith 
8276bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8277bb7acecfSBarry Smith 
82781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8279d29d7c6eSMatthew G. Knepley @*/
8280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec X)
8281d71ae5a4SJacob Faibussowitsch {
8282d29d7c6eSMatthew G. Knepley   DM  dmIn;
8283d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8284d29d7c6eSMatthew G. Knepley 
8285d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8286d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8287d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8288d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8289d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8290f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
829172fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
829272fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8293d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8294d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8295d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8296d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8297d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
82983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8299d29d7c6eSMatthew G. Knepley }
8300d29d7c6eSMatthew G. Knepley 
8301d29d7c6eSMatthew G. Knepley /*@C
8302ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8303ece3a9fcSMatthew G. Knepley 
830420f4b53cSBarry Smith   Not Collective
8305ece3a9fcSMatthew G. Knepley 
8306ece3a9fcSMatthew G. Knepley   Input Parameters:
8307bb7acecfSBarry Smith + dm      - The `DM`
8308ece3a9fcSMatthew G. Knepley . time    - The time
8309bb7acecfSBarry Smith . label   - The `DMLabel` marking the portion of the domain boundary to output
8310ece3a9fcSMatthew G. Knepley . numIds  - The number of label ids to use
8311ece3a9fcSMatthew G. Knepley . ids     - The label ids to use for marking
8312bb7acecfSBarry Smith . Nc      - The number of components to set in the output, or `PETSC_DETERMINE` for all components
831320f4b53cSBarry Smith . comps   - The components to set in the output, or `NULL` for all components
8314ece3a9fcSMatthew G. Knepley . localU  - The input field vector
8315ece3a9fcSMatthew G. Knepley . funcs   - The functions to evaluate, one per field
8316ece3a9fcSMatthew G. Knepley - mode    - The insertion mode for values
8317ece3a9fcSMatthew G. Knepley 
8318ece3a9fcSMatthew G. Knepley   Output Parameter:
8319ece3a9fcSMatthew G. Knepley . localX  - The output vector
8320ece3a9fcSMatthew G. Knepley 
832120f4b53cSBarry Smith    Calling sequence of `funcs`:
832220f4b53cSBarry Smith .vb
832320f4b53cSBarry Smith    void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux,
832420f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
832520f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
832620f4b53cSBarry Smith               PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]);
832720f4b53cSBarry Smith .ve
8328ece3a9fcSMatthew G. Knepley +  dim          - The spatial dimension
8329ece3a9fcSMatthew G. Knepley .  Nf           - The number of input fields
8330ece3a9fcSMatthew G. Knepley .  NfAux        - The number of input auxiliary fields
8331ece3a9fcSMatthew G. Knepley .  uOff         - The offset of each field in u[]
8332ece3a9fcSMatthew G. Knepley .  uOff_x       - The offset of each field in u_x[]
8333ece3a9fcSMatthew G. Knepley .  u            - The field values at this point in space
8334ece3a9fcSMatthew G. Knepley .  u_t          - The field time derivative at this point in space (or NULL)
8335ece3a9fcSMatthew G. Knepley .  u_x          - The field derivatives at this point in space
8336ece3a9fcSMatthew G. Knepley .  aOff         - The offset of each auxiliary field in u[]
8337ece3a9fcSMatthew G. Knepley .  aOff_x       - The offset of each auxiliary field in u_x[]
8338ece3a9fcSMatthew G. Knepley .  a            - The auxiliary field values at this point in space
8339ece3a9fcSMatthew G. Knepley .  a_t          - The auxiliary field time derivative at this point in space (or NULL)
8340ece3a9fcSMatthew G. Knepley .  a_x          - The auxiliary field derivatives at this point in space
8341ece3a9fcSMatthew G. Knepley .  t            - The current time
8342ece3a9fcSMatthew G. Knepley .  x            - The coordinates of this point
8343ece3a9fcSMatthew G. Knepley .  n            - The face normal
8344ece3a9fcSMatthew G. Knepley .  numConstants - The number of constants
8345ece3a9fcSMatthew G. Knepley .  constants    - The value of each constant
8346ece3a9fcSMatthew G. Knepley -  f            - The value of the function at this point in space
8347ece3a9fcSMatthew G. Knepley 
8348ece3a9fcSMatthew G. Knepley   Note:
8349bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8350bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8351bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8352ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8353ece3a9fcSMatthew G. Knepley 
8354ece3a9fcSMatthew G. Knepley   Level: intermediate
8355ece3a9fcSMatthew G. Knepley 
8356bb7acecfSBarry Smith   Developer Notes:
8357bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8358bb7acecfSBarry Smith 
8359bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8360bb7acecfSBarry Smith 
83611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8362ece3a9fcSMatthew G. Knepley @*/
8363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX)
8364d71ae5a4SJacob Faibussowitsch {
8365ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8366ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8367064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8368064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
83699566063dSJacob Faibussowitsch   PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
83703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8371ece3a9fcSMatthew G. Knepley }
8372ece3a9fcSMatthew G. Knepley 
8373ece3a9fcSMatthew G. Knepley /*@C
83742716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
83752716604bSToby Isaac 
837620f4b53cSBarry Smith   Collective
8377bb7acecfSBarry Smith 
83782716604bSToby Isaac   Input Parameters:
8379bb7acecfSBarry Smith + dm    - The `DM`
83800709b2feSToby Isaac . time  - The time
83812716604bSToby Isaac . funcs - The functions to evaluate for each field component
83822716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8383574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
83842716604bSToby Isaac 
83852716604bSToby Isaac   Output Parameter:
83862716604bSToby Isaac . diff - The diff ||u - u_h||_2
83872716604bSToby Isaac 
83882716604bSToby Isaac   Level: developer
83892716604bSToby Isaac 
8390bb7acecfSBarry Smith   Developer Notes:
8391bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8392bb7acecfSBarry Smith 
8393bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8394bb7acecfSBarry Smith 
83951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
83962716604bSToby Isaac @*/
8397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8398d71ae5a4SJacob Faibussowitsch {
83992716604bSToby Isaac   PetscFunctionBegin;
84002716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8401b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
84029566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2diff)(dm, time, funcs, ctxs, X, diff));
84033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84042716604bSToby Isaac }
8405b698f381SToby Isaac 
8406b698f381SToby Isaac /*@C
8407b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8408b698f381SToby Isaac 
840920f4b53cSBarry Smith   Collective
8410d083f849SBarry Smith 
8411b698f381SToby Isaac   Input Parameters:
8412bb7acecfSBarry Smith + dm    - The `DM`
8413b698f381SToby Isaac , time  - The time
8414b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8415b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8416574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8417b698f381SToby Isaac - n     - The vector to project along
8418b698f381SToby Isaac 
8419b698f381SToby Isaac   Output Parameter:
8420b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8421b698f381SToby Isaac 
8422b698f381SToby Isaac   Level: developer
8423b698f381SToby Isaac 
8424bb7acecfSBarry Smith   Developer Notes:
8425bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8426bb7acecfSBarry Smith 
8427bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8428bb7acecfSBarry Smith 
84291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8430b698f381SToby Isaac @*/
8431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8432d71ae5a4SJacob Faibussowitsch {
8433b698f381SToby Isaac   PetscFunctionBegin;
8434b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8435b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
84369566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2gradientdiff)(dm, time, funcs, ctxs, X, n, diff));
84373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8438b698f381SToby Isaac }
8439b698f381SToby Isaac 
84402a16baeaSToby Isaac /*@C
84412a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
84422a16baeaSToby Isaac 
844320f4b53cSBarry Smith   Collective
8444d083f849SBarry Smith 
84452a16baeaSToby Isaac   Input Parameters:
8446bb7acecfSBarry Smith + dm    - The `DM`
84472a16baeaSToby Isaac . time  - The time
84482a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
84492a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8450574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
84512a16baeaSToby Isaac 
84522a16baeaSToby Isaac   Output Parameter:
84532a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
84542a16baeaSToby Isaac 
84552a16baeaSToby Isaac   Level: developer
84562a16baeaSToby Isaac 
8457bb7acecfSBarry Smith   Developer Notes:
8458bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8459bb7acecfSBarry Smith 
8460bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8461bb7acecfSBarry Smith 
84621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
84632a16baeaSToby Isaac @*/
8464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8465d71ae5a4SJacob Faibussowitsch {
84662a16baeaSToby Isaac   PetscFunctionBegin;
84672a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
84682a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
84699566063dSJacob Faibussowitsch   PetscCall((dm->ops->computel2fielddiff)(dm, time, funcs, ctxs, X, diff));
84703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84712a16baeaSToby Isaac }
84722a16baeaSToby Isaac 
8473df0b854cSToby Isaac /*@C
8474bb7acecfSBarry Smith  DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8475502a2867SDave May 
8476502a2867SDave May  Not Collective
8477502a2867SDave May 
8478502a2867SDave May  Input Parameter:
8479bb7acecfSBarry Smith .  dm    - The `DM`
8480502a2867SDave May 
84810a19bb7dSprj-  Output Parameters:
84820a19bb7dSprj- +  nranks - the number of neighbours
84830a19bb7dSprj- -  ranks - the neighbors ranks
8484502a2867SDave May 
84859bdbcad8SBarry Smith  Level: beginner
84869bdbcad8SBarry Smith 
8487bb7acecfSBarry Smith  Note:
8488bb7acecfSBarry Smith  Do not free the array, it is freed when the `DM` is destroyed.
8489502a2867SDave May 
84901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8491502a2867SDave May @*/
8492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8493d71ae5a4SJacob Faibussowitsch {
8494502a2867SDave May   PetscFunctionBegin;
8495502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
84969566063dSJacob Faibussowitsch   PetscCall((dm->ops->getneighbors)(dm, nranks, ranks));
84973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8498502a2867SDave May }
8499502a2867SDave May 
8500531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8501531c7667SBarry Smith 
8502531c7667SBarry Smith /*
8503531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
85042b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8505531c7667SBarry Smith */
8506d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8507d71ae5a4SJacob Faibussowitsch {
8508531c7667SBarry Smith   PetscFunctionBegin;
8509531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8510531c7667SBarry Smith     Vec x1local;
8511531c7667SBarry Smith     DM  dm;
85129566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
85137a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
85149566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
85159566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
85169566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8517531c7667SBarry Smith     x1 = x1local;
8518531c7667SBarry Smith   }
85199566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8520531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8521531c7667SBarry Smith     DM dm;
85229566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
85239566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8524531c7667SBarry Smith   }
85253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8526531c7667SBarry Smith }
8527531c7667SBarry Smith 
8528531c7667SBarry Smith /*@
8529bb7acecfSBarry Smith     MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8530531c7667SBarry Smith 
8531531c7667SBarry Smith     Input Parameter:
8532bb7acecfSBarry Smith .    coloring - the `MatFDColoring` object
8533531c7667SBarry Smith 
85349bdbcad8SBarry Smith     Level: advanced
85359bdbcad8SBarry Smith 
8536bb7acecfSBarry Smith     Developer Note:
8537bb7acecfSBarry Smith     this routine exists because the PETSc `Mat` library does not know about the `DM` objects
8538531c7667SBarry Smith 
85391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8540531c7667SBarry Smith @*/
8541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8542d71ae5a4SJacob Faibussowitsch {
8543531c7667SBarry Smith   PetscFunctionBegin;
8544531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
85453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8546531c7667SBarry Smith }
85478320bc6fSPatrick Sanan 
85488320bc6fSPatrick Sanan /*@
8549bb7acecfSBarry Smith     DMGetCompatibility - determine if two `DM`s are compatible
85508320bc6fSPatrick Sanan 
85518320bc6fSPatrick Sanan     Collective
85528320bc6fSPatrick Sanan 
85538320bc6fSPatrick Sanan     Input Parameters:
8554bb7acecfSBarry Smith +    dm1 - the first `DM`
8555bb7acecfSBarry Smith -    dm2 - the second `DM`
85568320bc6fSPatrick Sanan 
85578320bc6fSPatrick Sanan     Output Parameters:
8558bb7acecfSBarry Smith +    compatible - whether or not the two `DM`s are compatible
8559bb7acecfSBarry Smith -    set - whether or not the compatible value was actually determined and set
85608320bc6fSPatrick Sanan 
856120f4b53cSBarry Smith     Level: advanced
856220f4b53cSBarry Smith 
85638320bc6fSPatrick Sanan     Notes:
8564bb7acecfSBarry Smith     Two `DM`s are deemed compatible if they represent the same parallel decomposition
85653d862458SPatrick Sanan     of the same topology. This implies that the section (field data) on one
85668320bc6fSPatrick Sanan     "makes sense" with respect to the topology and parallel decomposition of the other.
8567bb7acecfSBarry Smith     Loosely speaking, compatible `DM`s represent the same domain and parallel
85683d862458SPatrick Sanan     decomposition, but hold different data.
85698320bc6fSPatrick Sanan 
85708320bc6fSPatrick Sanan     Typically, one would confirm compatibility if intending to simultaneously iterate
8571bb7acecfSBarry Smith     over a pair of vectors obtained from different `DM`s.
85728320bc6fSPatrick Sanan 
8573bb7acecfSBarry Smith     For example, two `DMDA` objects are compatible if they have the same local
85748320bc6fSPatrick Sanan     and global sizes and the same stencil width. They can have different numbers
85758320bc6fSPatrick Sanan     of degrees of freedom per node. Thus, one could use the node numbering from
8576bb7acecfSBarry Smith     either `DM` in bounds for a loop over vectors derived from either `DM`.
85778320bc6fSPatrick Sanan 
8578bb7acecfSBarry Smith     Consider the operation of summing data living on a 2-dof `DMDA` to data living
8579bb7acecfSBarry Smith     on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
85808320bc6fSPatrick Sanan .vb
85818320bc6fSPatrick Sanan   ...
85829566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
85838320bc6fSPatrick Sanan   if (set && compatible)  {
85849566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
85859566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
85869566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
85878320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
85888320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
85898320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
85908320bc6fSPatrick Sanan       }
85918320bc6fSPatrick Sanan     }
85929566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
85939566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
85948320bc6fSPatrick Sanan   } else {
85958320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
85968320bc6fSPatrick Sanan   }
85978320bc6fSPatrick Sanan   ...
85988320bc6fSPatrick Sanan .ve
85998320bc6fSPatrick Sanan 
8600bb7acecfSBarry Smith     Checking compatibility might be expensive for a given implementation of `DM`,
86018320bc6fSPatrick Sanan     or might be impossible to unambiguously confirm or deny. For this reason,
86028320bc6fSPatrick Sanan     this function may decline to determine compatibility, and hence users should
86038320bc6fSPatrick Sanan     always check the "set" output parameter.
86048320bc6fSPatrick Sanan 
8605bb7acecfSBarry Smith     A `DM` is always compatible with itself.
86068320bc6fSPatrick Sanan 
8607bb7acecfSBarry Smith     In the current implementation, `DM`s which live on "unequal" communicators
86088320bc6fSPatrick Sanan     (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
86098320bc6fSPatrick Sanan     incompatible.
86108320bc6fSPatrick Sanan 
86118320bc6fSPatrick Sanan     This function is labeled "Collective," as information about all subdomains
8612bb7acecfSBarry Smith     is required on each rank. However, in `DM` implementations which store all this
86138320bc6fSPatrick Sanan     information locally, this function may be merely "Logically Collective".
86148320bc6fSPatrick Sanan 
8615bb7acecfSBarry Smith     Developer Note:
8616bb7acecfSBarry Smith     Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
86173d862458SPatrick Sanan     iff B is compatible with A. Thus, this function checks the implementations
8618a5bc1bf3SBarry Smith     of both dm and dmc (if they are of different types), attempting to determine
8619bb7acecfSBarry Smith     compatibility. It is left to `DM` implementers to ensure that symmetry is
86208320bc6fSPatrick Sanan     preserved. The simplest way to do this is, when implementing type-specific
86213d862458SPatrick Sanan     logic for this function, is to check for existing logic in the implementation
8622bb7acecfSBarry Smith     of other `DM` types and let *set = PETSC_FALSE if found.
86238320bc6fSPatrick Sanan 
86241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
86258320bc6fSPatrick Sanan @*/
8626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8627d71ae5a4SJacob Faibussowitsch {
86288320bc6fSPatrick Sanan   PetscMPIInt compareResult;
86298320bc6fSPatrick Sanan   DMType      type, type2;
86308320bc6fSPatrick Sanan   PetscBool   sameType;
86318320bc6fSPatrick Sanan 
86328320bc6fSPatrick Sanan   PetscFunctionBegin;
8633a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
86348320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
86358320bc6fSPatrick Sanan 
86368320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8637a5bc1bf3SBarry Smith   if (dm1 == dm2) {
86388320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
86398320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
86403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
86418320bc6fSPatrick Sanan   }
86428320bc6fSPatrick Sanan 
86438320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
86448320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
86458320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
86468320bc6fSPatrick Sanan      determined by the implementation-specific logic */
86479566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
86488320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
86498320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
86508320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
86513ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
86528320bc6fSPatrick Sanan   }
86538320bc6fSPatrick Sanan 
86548320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8655a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8656dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
86573ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
86588320bc6fSPatrick Sanan   }
86598320bc6fSPatrick Sanan 
8660a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
86618320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
86629566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
86639566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
86649566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
86658320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8666dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
86678320bc6fSPatrick Sanan   } else {
86688320bc6fSPatrick Sanan     *set = PETSC_FALSE;
86698320bc6fSPatrick Sanan   }
86703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86718320bc6fSPatrick Sanan }
8672c0f0dcc3SMatthew G. Knepley 
8673c0f0dcc3SMatthew G. Knepley /*@C
8674bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8675c0f0dcc3SMatthew G. Knepley 
867620f4b53cSBarry Smith   Logically Collective
8677c0f0dcc3SMatthew G. Knepley 
8678c0f0dcc3SMatthew G. Knepley   Input Parameters:
8679bb7acecfSBarry Smith + DM - the `DM`
8680c0f0dcc3SMatthew G. Knepley . f - the monitor function
868120f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
868220f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`)
8683c0f0dcc3SMatthew G. Knepley 
868420f4b53cSBarry Smith   Options Database Key:
8685bb7acecfSBarry Smith - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8686c0f0dcc3SMatthew G. Knepley                             does not cancel those set via the options database.
8687c0f0dcc3SMatthew G. Knepley 
86889bdbcad8SBarry Smith   Level: intermediate
86899bdbcad8SBarry Smith 
8690bb7acecfSBarry Smith   Note:
8691c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8692bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8693c0f0dcc3SMatthew G. Knepley   order in which they were set.
8694c0f0dcc3SMatthew G. Knepley 
8695bb7acecfSBarry Smith   Fortran Note:
8696bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8697bb7acecfSBarry Smith 
8698bb7acecfSBarry Smith   Developer Note:
8699bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8700c0f0dcc3SMatthew G. Knepley 
87011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8702c0f0dcc3SMatthew G. Knepley @*/
8703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **))
8704d71ae5a4SJacob Faibussowitsch {
8705c0f0dcc3SMatthew G. Knepley   PetscInt m;
8706c0f0dcc3SMatthew G. Knepley 
8707c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8708c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8709c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8710c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8711c0f0dcc3SMatthew G. Knepley 
87129566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
87133ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8714c0f0dcc3SMatthew G. Knepley   }
87157a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
8716c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
8717c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
8718c0f0dcc3SMatthew G. Knepley   dm->monitorcontext[dm->numbermonitors++] = (void *)mctx;
87193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8720c0f0dcc3SMatthew G. Knepley }
8721c0f0dcc3SMatthew G. Knepley 
8722c0f0dcc3SMatthew G. Knepley /*@
8723bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
8724c0f0dcc3SMatthew G. Knepley 
872520f4b53cSBarry Smith   Logically Collective
8726c0f0dcc3SMatthew G. Knepley 
8727c0f0dcc3SMatthew G. Knepley   Input Parameter:
8728c0f0dcc3SMatthew G. Knepley . dm - the DM
8729c0f0dcc3SMatthew G. Knepley 
8730c0f0dcc3SMatthew G. Knepley   Options Database Key:
8731c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
8732bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
8733c0f0dcc3SMatthew G. Knepley   set via the options database
8734c0f0dcc3SMatthew G. Knepley 
87359bdbcad8SBarry Smith   Level: intermediate
87369bdbcad8SBarry Smith 
8737bb7acecfSBarry Smith   Note:
8738bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
8739c0f0dcc3SMatthew G. Knepley 
87401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
8741c0f0dcc3SMatthew G. Knepley @*/
8742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
8743d71ae5a4SJacob Faibussowitsch {
8744c0f0dcc3SMatthew G. Knepley   PetscInt m;
8745c0f0dcc3SMatthew G. Knepley 
8746c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8747c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8748c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
87499566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
8750c0f0dcc3SMatthew G. Knepley   }
8751c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
87523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8753c0f0dcc3SMatthew G. Knepley }
8754c0f0dcc3SMatthew G. Knepley 
8755c0f0dcc3SMatthew G. Knepley /*@C
8756c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
8757c0f0dcc3SMatthew G. Knepley 
875820f4b53cSBarry Smith   Collective
8759c0f0dcc3SMatthew G. Knepley 
8760c0f0dcc3SMatthew G. Knepley   Input Parameters:
8761bb7acecfSBarry Smith + dm   - `DM` object you wish to monitor
8762c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking
8763c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done
8764c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor
8765c0f0dcc3SMatthew G. Knepley . monitor - the monitor function
8766bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
8767c0f0dcc3SMatthew G. Knepley 
8768c0f0dcc3SMatthew G. Knepley   Output Parameter:
8769c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
8770c0f0dcc3SMatthew G. Knepley 
8771c0f0dcc3SMatthew G. Knepley   Level: developer
8772c0f0dcc3SMatthew G. Knepley 
87731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
8774db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
8775db781477SPatrick Sanan           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`,
8776db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
8777c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
8778db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
8779bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
8780c0f0dcc3SMatthew G. Knepley @*/
8781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
8782d71ae5a4SJacob Faibussowitsch {
8783c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
8784c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
8785c0f0dcc3SMatthew G. Knepley 
8786c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8787c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
87889566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
8789c0f0dcc3SMatthew G. Knepley   if (*flg) {
8790c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
8791c0f0dcc3SMatthew G. Knepley 
87929566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
87939566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)viewer));
87949566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
87959566063dSJacob Faibussowitsch     PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy));
8796c0f0dcc3SMatthew G. Knepley   }
87973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8798c0f0dcc3SMatthew G. Knepley }
8799c0f0dcc3SMatthew G. Knepley 
8800c0f0dcc3SMatthew G. Knepley /*@
8801c0f0dcc3SMatthew G. Knepley    DMMonitor - runs the user provided monitor routines, if they exist
8802c0f0dcc3SMatthew G. Knepley 
880320f4b53cSBarry Smith    Collective
8804c0f0dcc3SMatthew G. Knepley 
88052fe279fdSBarry Smith    Input Parameter:
8806bb7acecfSBarry Smith .  dm - The `DM`
8807c0f0dcc3SMatthew G. Knepley 
8808c0f0dcc3SMatthew G. Knepley    Level: developer
8809c0f0dcc3SMatthew G. Knepley 
8810bb7acecfSBarry Smith    Question:
8811bb7acecfSBarry Smith    Note should indicate when during the life of the `DM` the monitor is run. It appears to be related to the discretization process seems rather specialized
8812bb7acecfSBarry Smith    since some `DM` have no concept of discretization
8813bb7acecfSBarry Smith 
88141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
8815c0f0dcc3SMatthew G. Knepley @*/
8816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
8817d71ae5a4SJacob Faibussowitsch {
8818c0f0dcc3SMatthew G. Knepley   PetscInt m;
8819c0f0dcc3SMatthew G. Knepley 
8820c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
88213ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
8822c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
882348a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
88243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8825c0f0dcc3SMatthew G. Knepley }
88262e4af2aeSMatthew G. Knepley 
88272e4af2aeSMatthew G. Knepley /*@
8828bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
88292e4af2aeSMatthew G. Knepley 
883020f4b53cSBarry Smith   Collective
88312e4af2aeSMatthew G. Knepley 
88322e4af2aeSMatthew G. Knepley   Input Parameters:
8833bb7acecfSBarry Smith + dm     - The `DM`
88346b867d5aSJose E. Roman - sol    - The solution vector
88352e4af2aeSMatthew G. Knepley 
88366b867d5aSJose E. Roman   Input/Output Parameter:
883720f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
88386b867d5aSJose E. Roman            contains the error in each field
88396b867d5aSJose E. Roman 
88406b867d5aSJose E. Roman   Output Parameter:
884120f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
884220f4b53cSBarry Smith 
884320f4b53cSBarry Smith   Level: developer
88442e4af2aeSMatthew G. Knepley 
8845bb7acecfSBarry Smith   Note:
8846bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
88472e4af2aeSMatthew G. Knepley 
88481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
88492e4af2aeSMatthew G. Knepley @*/
8850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
8851d71ae5a4SJacob Faibussowitsch {
88522e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
88532e4af2aeSMatthew G. Knepley   void    **ctxs;
88542e4af2aeSMatthew G. Knepley   PetscReal time;
88552e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
88562e4af2aeSMatthew G. Knepley 
88572e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
88589566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
88599566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
88609566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
88612e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
88622e4af2aeSMatthew G. Knepley     PetscDS         ds;
88632e4af2aeSMatthew G. Knepley     DMLabel         label;
88642e4af2aeSMatthew G. Knepley     IS              fieldIS;
88652e4af2aeSMatthew G. Knepley     const PetscInt *fields;
88662e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
88672e4af2aeSMatthew G. Knepley 
886807218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
88699566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
88709566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
88712e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
88722e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
88739566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
88742e4af2aeSMatthew G. Knepley     }
88759566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
88762e4af2aeSMatthew G. Knepley   }
8877ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
88789566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
88799566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
88802e4af2aeSMatthew G. Knepley   if (errorVec) {
88812e4af2aeSMatthew G. Knepley     DM             edm;
88822e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
88832e4af2aeSMatthew G. Knepley     PetscBool      simplex;
88842e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
88852e4af2aeSMatthew G. Knepley 
88869566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
88879566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
88889566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
88899566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
88902e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
88919566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
88922e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
88932e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
88942e4af2aeSMatthew G. Knepley       PetscQuadrature q;
88952e4af2aeSMatthew G. Knepley       const char     *name;
88962e4af2aeSMatthew G. Knepley 
88979566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
88989566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
88999566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
89009566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
89019566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
89029566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
89039566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
89049566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
89052e4af2aeSMatthew G. Knepley     }
89069566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
89072e4af2aeSMatthew G. Knepley 
89089566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
89099566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
89109566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
89119566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
89122e4af2aeSMatthew G. Knepley   }
89139566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
89143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
89152e4af2aeSMatthew G. Knepley }
89169a2a23afSMatthew G. Knepley 
89179a2a23afSMatthew G. Knepley /*@
8918bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
89199a2a23afSMatthew G. Knepley 
892020f4b53cSBarry Smith   Not Collective
89219a2a23afSMatthew G. Knepley 
89229a2a23afSMatthew G. Knepley   Input Parameter:
8923bb7acecfSBarry Smith . dm     - The `DM`
89249a2a23afSMatthew G. Knepley 
89259a2a23afSMatthew G. Knepley   Output Parameter:
8926a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
89279a2a23afSMatthew G. Knepley 
89289a2a23afSMatthew G. Knepley   Level: advanced
89299a2a23afSMatthew G. Knepley 
89301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
89319a2a23afSMatthew G. Knepley @*/
8932d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
8933d71ae5a4SJacob Faibussowitsch {
89349a2a23afSMatthew G. Knepley   PetscFunctionBegin;
89359a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89369566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
89373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
89389a2a23afSMatthew G. Knepley }
89399a2a23afSMatthew G. Knepley 
89409a2a23afSMatthew G. Knepley /*@
8941ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
89429a2a23afSMatthew G. Knepley 
894320f4b53cSBarry Smith   Not Collective
89449a2a23afSMatthew G. Knepley 
89459a2a23afSMatthew G. Knepley   Input Parameters:
8946bb7acecfSBarry Smith + dm     - The `DM`
8947bb7acecfSBarry Smith . label  - The `DMLabel`
8948ac17215fSMatthew G. Knepley . value  - The label value indicating the region
8949ac17215fSMatthew G. Knepley - part   - The equation part, or 0 if unused
89509a2a23afSMatthew G. Knepley 
89519a2a23afSMatthew G. Knepley   Output Parameter:
8952bb7acecfSBarry Smith . aux    - The `Vec` holding auxiliary field data
89539a2a23afSMatthew G. Knepley 
89549bdbcad8SBarry Smith   Level: advanced
89559bdbcad8SBarry Smith 
8956bb7acecfSBarry Smith   Note:
8957bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
895804c51a94SMatthew G. Knepley 
89591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
89609a2a23afSMatthew G. Knepley @*/
8961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
8962d71ae5a4SJacob Faibussowitsch {
8963ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
896404c51a94SMatthew G. Knepley   PetscBool       has;
89659a2a23afSMatthew G. Knepley 
89669a2a23afSMatthew G. Knepley   PetscFunctionBegin;
89679a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89689a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
89699a2a23afSMatthew G. Knepley   key.label = label;
89709a2a23afSMatthew G. Knepley   key.value = value;
8971ac17215fSMatthew G. Knepley   key.part  = part;
89729566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
89739566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
89749566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
89753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
89769a2a23afSMatthew G. Knepley }
89779a2a23afSMatthew G. Knepley 
89789a2a23afSMatthew G. Knepley /*@
8979bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
89809a2a23afSMatthew G. Knepley 
898120f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
89829a2a23afSMatthew G. Knepley 
89839a2a23afSMatthew G. Knepley   Input Parameters:
8984bb7acecfSBarry Smith + dm     - The `DM`
8985bb7acecfSBarry Smith . label  - The `DMLabel`
89869a2a23afSMatthew G. Knepley . value  - The label value indicating the region
8987ac17215fSMatthew G. Knepley . part   - The equation part, or 0 if unused
8988bb7acecfSBarry Smith - aux    - The `Vec` holding auxiliary field data
89899a2a23afSMatthew G. Knepley 
89909a2a23afSMatthew G. Knepley   Level: advanced
89919a2a23afSMatthew G. Knepley 
89921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
89939a2a23afSMatthew G. Knepley @*/
8994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
8995d71ae5a4SJacob Faibussowitsch {
89969a2a23afSMatthew G. Knepley   Vec             old;
89979a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
89989a2a23afSMatthew G. Knepley 
89999a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90009a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90019a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
90029a2a23afSMatthew G. Knepley   key.label = label;
90039a2a23afSMatthew G. Knepley   key.value = value;
9004ac17215fSMatthew G. Knepley   key.part  = part;
90059566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
90069566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
90079566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)old));
90089566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
90099566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
90103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90119a2a23afSMatthew G. Knepley }
90129a2a23afSMatthew G. Knepley 
90139a2a23afSMatthew G. Knepley /*@C
9014bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
90159a2a23afSMatthew G. Knepley 
901620f4b53cSBarry Smith   Not Collective
90179a2a23afSMatthew G. Knepley 
90189a2a23afSMatthew G. Knepley   Input Parameter:
9019bb7acecfSBarry Smith . dm      - The `DM`
90209a2a23afSMatthew G. Knepley 
90219a2a23afSMatthew G. Knepley   Output Parameters:
9022bb7acecfSBarry Smith + labels  - The `DMLabel`s for each `Vec`
9023bb7acecfSBarry Smith . values  - The label values for each `Vec`
9024bb7acecfSBarry Smith - parts   - The equation parts for each `Vec`
90259a2a23afSMatthew G. Knepley 
90269bdbcad8SBarry Smith   Level: advanced
90279bdbcad8SBarry Smith 
9028bb7acecfSBarry Smith   Note:
9029bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
90309a2a23afSMatthew G. Knepley 
90311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMSetAuxiliaryVec()`, DMCopyAuxiliaryVec()`
90329a2a23afSMatthew G. Knepley @*/
9033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9034d71ae5a4SJacob Faibussowitsch {
90359a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
90369a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
90379a2a23afSMatthew G. Knepley 
90389a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90399a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90409a2a23afSMatthew G. Knepley   PetscValidPointer(labels, 2);
9041dadcf809SJacob Faibussowitsch   PetscValidIntPointer(values, 3);
9042dadcf809SJacob Faibussowitsch   PetscValidIntPointer(parts, 4);
90439566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
90449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
90459566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
90469371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
90479371c9d4SSatish Balay     labels[i] = keys[i].label;
90489371c9d4SSatish Balay     values[i] = keys[i].value;
90499371c9d4SSatish Balay     parts[i]  = keys[i].part;
90509371c9d4SSatish Balay   }
90519566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
90523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90539a2a23afSMatthew G. Knepley }
90549a2a23afSMatthew G. Knepley 
90559a2a23afSMatthew G. Knepley /*@
9056bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
90579a2a23afSMatthew G. Knepley 
905820f4b53cSBarry Smith   Not Collective
90599a2a23afSMatthew G. Knepley 
90609a2a23afSMatthew G. Knepley   Input Parameter:
9061bb7acecfSBarry Smith . dm    - The `DM`
90629a2a23afSMatthew G. Knepley 
90639a2a23afSMatthew G. Knepley   Output Parameter:
9064bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
90659a2a23afSMatthew G. Knepley 
90669a2a23afSMatthew G. Knepley   Level: advanced
90679a2a23afSMatthew G. Knepley 
9068bb7acecfSBarry Smith   Note:
9069bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9070bb7acecfSBarry Smith 
90711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
90729a2a23afSMatthew G. Knepley @*/
9073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9074d71ae5a4SJacob Faibussowitsch {
90759a2a23afSMatthew G. Knepley   PetscFunctionBegin;
90769a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
90779566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
90789566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
90793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90809a2a23afSMatthew G. Knepley }
9081b5a892a1SMatthew G. Knepley 
9082b5a892a1SMatthew G. Knepley /*@C
9083bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9084b5a892a1SMatthew G. Knepley 
908520f4b53cSBarry Smith   Not Collective
9086b5a892a1SMatthew G. Knepley 
9087b5a892a1SMatthew G. Knepley   Input Parameters:
9088bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9089b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9090b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9091b5a892a1SMatthew G. Knepley 
9092b5a892a1SMatthew G. Knepley   Output Parameters:
9093bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9094b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9095b5a892a1SMatthew G. Knepley 
9096b5a892a1SMatthew G. Knepley   Level: advanced
9097b5a892a1SMatthew G. Knepley 
9098bb7acecfSBarry Smith   Note:
9099bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9100bb7acecfSBarry Smith 
9101bb7acecfSBarry Smith   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2
9102bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9103bb7acecfSBarry Smith 
9104bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9105bb7acecfSBarry Smith 
91061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9107b5a892a1SMatthew G. Knepley @*/
9108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9109d71ae5a4SJacob Faibussowitsch {
9110b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
9111b5a892a1SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2;
9112b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9113b5a892a1SMatthew G. Knepley 
9114b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
91159371c9d4SSatish Balay   if (!nO) {
91169371c9d4SSatish Balay     *ornt  = 0;
91179371c9d4SSatish Balay     *found = PETSC_TRUE;
91183ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
91199371c9d4SSatish Balay   }
9120b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
9121b5a892a1SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o);
9122b5a892a1SMatthew G. Knepley 
91239371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
91249371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
91259371c9d4SSatish Balay     if (c == cS) {
91269371c9d4SSatish Balay       *ornt = o;
91279371c9d4SSatish Balay       break;
91289371c9d4SSatish Balay     }
9129b5a892a1SMatthew G. Knepley   }
9130b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
91313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9132b5a892a1SMatthew G. Knepley }
9133b5a892a1SMatthew G. Knepley 
9134b5a892a1SMatthew G. Knepley /*@C
9135bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9136b5a892a1SMatthew G. Knepley 
913720f4b53cSBarry Smith   Not Collective
9138b5a892a1SMatthew G. Knepley 
9139b5a892a1SMatthew G. Knepley   Input Parameters:
9140bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9141b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9142b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9143b5a892a1SMatthew G. Knepley 
91442fe279fdSBarry Smith   Output Parameter:
9145bb7acecfSBarry Smith . ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9146b5a892a1SMatthew G. Knepley 
9147b5a892a1SMatthew G. Knepley   Level: advanced
9148b5a892a1SMatthew G. Knepley 
9149bb7acecfSBarry Smith   Note:
9150bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9151bb7acecfSBarry Smith 
9152bb7acecfSBarry Smith   Developer Note:
9153bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9154bb7acecfSBarry Smith 
91551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9156b5a892a1SMatthew G. Knepley @*/
9157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9158d71ae5a4SJacob Faibussowitsch {
9159b5a892a1SMatthew G. Knepley   PetscBool found;
9160b5a892a1SMatthew G. Knepley 
9161b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
91629566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
91637a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
91643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9165b5a892a1SMatthew G. Knepley }
9166b5a892a1SMatthew G. Knepley 
9167b5a892a1SMatthew G. Knepley /*@C
9168bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9169b5a892a1SMatthew G. Knepley 
917020f4b53cSBarry Smith   Not Collective
9171b5a892a1SMatthew G. Knepley 
9172b5a892a1SMatthew G. Knepley   Input Parameters:
9173bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9174b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9175b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9176b5a892a1SMatthew G. Knepley 
9177b5a892a1SMatthew G. Knepley   Output Parameters:
9178bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9179b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9180b5a892a1SMatthew G. Knepley 
9181b5a892a1SMatthew G. Knepley   Level: advanced
9182b5a892a1SMatthew G. Knepley 
9183bb7acecfSBarry Smith   Note:
9184bb7acecfSBarry Smith   An arrangement is a vertex order
9185bb7acecfSBarry Smith 
9186bb7acecfSBarry Smith   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2
9187bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9188bb7acecfSBarry Smith 
9189bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9190bb7acecfSBarry Smith 
91911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangment()`
9192b5a892a1SMatthew G. Knepley @*/
9193d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9194d71ae5a4SJacob Faibussowitsch {
9195b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
9196b5a892a1SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2;
9197b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9198b5a892a1SMatthew G. Knepley 
9199b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
92009371c9d4SSatish Balay   if (!nO) {
92019371c9d4SSatish Balay     *ornt  = 0;
92029371c9d4SSatish Balay     *found = PETSC_TRUE;
92033ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
92049371c9d4SSatish Balay   }
9205b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
9206b5a892a1SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o);
9207b5a892a1SMatthew G. Knepley 
92089371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
92099371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
92109371c9d4SSatish Balay     if (c == cS) {
92119371c9d4SSatish Balay       *ornt = o;
92129371c9d4SSatish Balay       break;
92139371c9d4SSatish Balay     }
9214b5a892a1SMatthew G. Knepley   }
9215b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
92163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9217b5a892a1SMatthew G. Knepley }
9218b5a892a1SMatthew G. Knepley 
9219b5a892a1SMatthew G. Knepley /*@C
9220bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9221b5a892a1SMatthew G. Knepley 
922220f4b53cSBarry Smith   Not Collective
9223b5a892a1SMatthew G. Knepley 
9224b5a892a1SMatthew G. Knepley   Input Parameters:
9225bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9226b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9227b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9228b5a892a1SMatthew G. Knepley 
92292fe279fdSBarry Smith   Output Parameter:
9230bb7acecfSBarry Smith . ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9231b5a892a1SMatthew G. Knepley 
9232b5a892a1SMatthew G. Knepley   Level: advanced
9233b5a892a1SMatthew G. Knepley 
9234bb7acecfSBarry Smith   Note:
9235bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9236bb7acecfSBarry Smith 
9237bb7acecfSBarry Smith   Developer Note:
9238bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9239bb7acecfSBarry Smith 
92401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9241b5a892a1SMatthew G. Knepley @*/
9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9243d71ae5a4SJacob Faibussowitsch {
9244b5a892a1SMatthew G. Knepley   PetscBool found;
9245b5a892a1SMatthew G. Knepley 
9246b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
92479566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
92487a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
92493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9250b5a892a1SMatthew G. Knepley }
9251012bc364SMatthew G. Knepley 
9252012bc364SMatthew G. Knepley /*@C
9253012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9254012bc364SMatthew G. Knepley 
925520f4b53cSBarry Smith   Not Collective
9256012bc364SMatthew G. Knepley 
9257012bc364SMatthew G. Knepley   Input Parameters:
9258bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9259012bc364SMatthew G. Knepley - point - Coordinates of the point
9260012bc364SMatthew G. Knepley 
92612fe279fdSBarry Smith   Output Parameter:
9262012bc364SMatthew G. Knepley . inside  - Flag indicating whether the point is inside the reference cell of given type
9263012bc364SMatthew G. Knepley 
9264012bc364SMatthew G. Knepley   Level: advanced
9265012bc364SMatthew G. Knepley 
92661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9267012bc364SMatthew G. Knepley @*/
9268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9269d71ae5a4SJacob Faibussowitsch {
9270012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9271012bc364SMatthew G. Knepley   PetscInt  d;
9272012bc364SMatthew G. Knepley 
9273012bc364SMatthew G. Knepley   PetscFunctionBegin;
9274012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9275012bc364SMatthew G. Knepley   switch (ct) {
9276012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9277012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9278012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
92799371c9d4SSatish Balay       if (point[d] < -1.0) {
92809371c9d4SSatish Balay         *inside = PETSC_FALSE;
92819371c9d4SSatish Balay         break;
92829371c9d4SSatish Balay       }
9283012bc364SMatthew G. Knepley       sum += point[d];
9284012bc364SMatthew G. Knepley     }
92859371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
92869371c9d4SSatish Balay       *inside = PETSC_FALSE;
92879371c9d4SSatish Balay       break;
92889371c9d4SSatish Balay     }
9289012bc364SMatthew G. Knepley     break;
9290012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9291012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9292012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
92939371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
92949371c9d4SSatish Balay         *inside = PETSC_FALSE;
9295012bc364SMatthew G. Knepley         break;
92969371c9d4SSatish Balay       }
92979371c9d4SSatish Balay     break;
9298d71ae5a4SJacob Faibussowitsch   default:
9299d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9300012bc364SMatthew G. Knepley   }
93013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9302012bc364SMatthew G. Knepley }
9303