1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6f19dbd58SToby Isaac #include <petscdmfield.h> 70c312b8eSJed Brown #include <petscsf.h> 82764a2aaSMatthew G. Knepley #include <petscds.h> 947c6ae99SBarry Smith 10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 11f918ec44SMatthew G. Knepley #include <petscfeceed.h> 12f918ec44SMatthew G. Knepley #endif 13f918ec44SMatthew G. Knepley 14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 15cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1600d952a4SJed Brown #endif 1700d952a4SJed Brown 18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 20708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2167a56275SMatthew G Knepley 22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 240e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 259371c9d4SSatish Balay const char *const DMPolytopeTypes[] = {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", 269371c9d4SSatish Balay "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 272cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2860c22052SBarry Smith 29a4121054SBarry Smith /*@ 30bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 31bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 32a4121054SBarry Smith 33d083f849SBarry Smith Collective 34a4121054SBarry Smith 35a4121054SBarry Smith Input Parameter: 36bb7acecfSBarry Smith . comm - The communicator for the `DM` object 37a4121054SBarry Smith 38a4121054SBarry Smith Output Parameter: 39bb7acecfSBarry Smith . dm - The `DM` object 40a4121054SBarry Smith 41a4121054SBarry Smith Level: beginner 42a4121054SBarry Smith 43bb7acecfSBarry Smith Notes: 44bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 45bb7acecfSBarry Smith 46bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 47bb7acecfSBarry Smith error when you try to use the dm. 48bb7acecfSBarry Smith 491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 50a4121054SBarry Smith @*/ 51d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 52d71ae5a4SJacob Faibussowitsch { 53a4121054SBarry Smith DM v; 54e5e52638SMatthew G. Knepley PetscDS ds; 55a4121054SBarry Smith 56a4121054SBarry Smith PetscFunctionBegin; 571411c6eeSJed Brown PetscValidPointer(dm, 2); 580298fd71SBarry Smith *dm = NULL; 599566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 60a4121054SBarry Smith 619566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 62e7c4fc90SDmitry Karpeev 6362e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6462e5d2d2SJDBetteridge 6549be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6649be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 670298fd71SBarry Smith v->ltogmap = NULL; 68a4ea9b21SRichard Tran Mills v->bind_below = 0; 691411c6eeSJed Brown v->bs = 1; 70171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 719566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 729566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 73c58f1c22SToby Isaac v->labels = NULL; 7434aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7534aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 76c58f1c22SToby Isaac v->depthLabel = NULL; 77ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 781bb6d2a8SBarry Smith v->localSection = NULL; 791bb6d2a8SBarry Smith v->globalSection = NULL; 803b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 813b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8279769bd5SJed Brown v->defaultConstraint.bias = NULL; 836858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 846858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 856858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8696173672SStefano Zampini v->dim = PETSC_DETERMINE; 87435a35e8SMatthew G Knepley { 88435a35e8SMatthew G Knepley PetscInt i; 89435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 900298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 91f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 92435a35e8SMatthew G Knepley } 93435a35e8SMatthew G Knepley } 949566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9507218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 969566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 979566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9814f150ffSMatthew G. Knepley v->dmBC = NULL; 99a8fb8f29SToby Isaac v->coarseMesh = NULL; 100f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 101cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1029566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1039566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1044a7a4c06SLawrence Mitchell 1051411c6eeSJed Brown *dm = v; 1063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 107a4121054SBarry Smith } 108a4121054SBarry Smith 10938221697SMatthew G. Knepley /*@ 110bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11138221697SMatthew G. Knepley 112d083f849SBarry Smith Collective 11338221697SMatthew G. Knepley 11438221697SMatthew G. Knepley Input Parameter: 115bb7acecfSBarry Smith . dm - The original `DM` object 11638221697SMatthew G. Knepley 11738221697SMatthew G. Knepley Output Parameter: 118bb7acecfSBarry Smith . newdm - The new `DM` object 11938221697SMatthew G. Knepley 12038221697SMatthew G. Knepley Level: beginner 12138221697SMatthew G. Knepley 1221cb8cacdSPatrick Sanan Notes: 123bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 124bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 125bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1261bb6d2a8SBarry Smith 127bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 12889706ed2SPatrick Sanan 129bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 130bb7acecfSBarry Smith 1311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMSetType()`, `DMConvert()` 13238221697SMatthew G. Knepley @*/ 133d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 134d71ae5a4SJacob Faibussowitsch { 13538221697SMatthew G. Knepley PetscSF sf; 13638221697SMatthew G. Knepley Vec coords; 13738221697SMatthew G. Knepley void *ctx; 1386858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13938221697SMatthew G. Knepley 14038221697SMatthew G. Knepley PetscFunctionBegin; 14138221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14238221697SMatthew G. Knepley PetscValidPointer(newdm, 2); 1439566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1449566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 145ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 146ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 147c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 1489566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1499566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1509566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 154dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1553f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1569566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1579566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1589566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1599566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 1606858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1616858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 162be4c1c3eSMatthew G. Knepley DM ncdm; 163be4c1c3eSMatthew G. Knepley PetscSection cs; 1645a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 165be4c1c3eSMatthew G. Knepley 1666858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1679566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 168712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1695a0206caSToby Isaac if (pEndMax >= 0) { 1706858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1716858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1729566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1736858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1746858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1759566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 176be4c1c3eSMatthew G. Knepley } 177be4c1c3eSMatthew G. Knepley } 1786858538eSMatthew G. Knepley } 1799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1809566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18238221697SMatthew G. Knepley if (coords) { 1839566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 18438221697SMatthew G. Knepley } else { 1859566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1869566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 18738221697SMatthew G. Knepley } 1886858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1896858538eSMatthew G. Knepley if (coords) { 1906858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1916858538eSMatthew G. Knepley } else { 1926858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1936858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 1946858538eSMatthew G. Knepley } 19590b157c4SStefano Zampini { 1964fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 1976858538eSMatthew G. Knepley 1984fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 1994fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 200c6b900c6SMatthew G. Knepley } 20134aa8a36SMatthew G. Knepley { 20234aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20334aa8a36SMatthew G. Knepley 2049566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2059566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 20634aa8a36SMatthew G. Knepley } 2073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20838221697SMatthew G. Knepley } 20938221697SMatthew G. Knepley 2109a42bb27SBarry Smith /*@C 211bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2129a42bb27SBarry Smith 21320f4b53cSBarry Smith Logically Collective 2149a42bb27SBarry Smith 215147403d9SBarry Smith Input Parameters: 2169a42bb27SBarry Smith + da - initial distributed array 217bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2189a42bb27SBarry Smith 21920f4b53cSBarry Smith Options Database Key: 220147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2219a42bb27SBarry Smith 2229a42bb27SBarry Smith Level: intermediate 2239a42bb27SBarry Smith 2241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 225bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2269a42bb27SBarry Smith @*/ 227d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVecType(DM da, VecType ctype) 228d71ae5a4SJacob Faibussowitsch { 2299a42bb27SBarry Smith PetscFunctionBegin; 2309a42bb27SBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 2319566063dSJacob Faibussowitsch PetscCall(PetscFree(da->vectype)); 2329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&da->vectype)); 2333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2349a42bb27SBarry Smith } 2359a42bb27SBarry Smith 236c0dedaeaSBarry Smith /*@C 237bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 238c0dedaeaSBarry Smith 23920f4b53cSBarry Smith Logically Collective 240c0dedaeaSBarry Smith 241c0dedaeaSBarry Smith Input Parameter: 242c0dedaeaSBarry Smith . da - initial distributed array 243c0dedaeaSBarry Smith 244c0dedaeaSBarry Smith Output Parameter: 245c0dedaeaSBarry Smith . ctype - the vector type 246c0dedaeaSBarry Smith 247c0dedaeaSBarry Smith Level: intermediate 248c0dedaeaSBarry Smith 2491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 250c0dedaeaSBarry Smith @*/ 251d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 252d71ae5a4SJacob Faibussowitsch { 253c0dedaeaSBarry Smith PetscFunctionBegin; 254c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 255c0dedaeaSBarry Smith *ctype = da->vectype; 2563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 257c0dedaeaSBarry Smith } 258c0dedaeaSBarry Smith 2595f1ad066SMatthew G Knepley /*@ 260bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2615f1ad066SMatthew G Knepley 26220f4b53cSBarry Smith Not Collective 2635f1ad066SMatthew G Knepley 2645f1ad066SMatthew G Knepley Input Parameter: 265bb7acecfSBarry Smith . v - The `Vec` 2665f1ad066SMatthew G Knepley 2675f1ad066SMatthew G Knepley Output Parameter: 268bb7acecfSBarry Smith . dm - The `DM` 2695f1ad066SMatthew G Knepley 2705f1ad066SMatthew G Knepley Level: intermediate 2715f1ad066SMatthew G Knepley 272bb7acecfSBarry Smith Note: 273bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 274bb7acecfSBarry Smith 2751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2765f1ad066SMatthew G Knepley @*/ 277d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 278d71ae5a4SJacob Faibussowitsch { 2795f1ad066SMatthew G Knepley PetscFunctionBegin; 2805f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2815f1ad066SMatthew G Knepley PetscValidPointer(dm, 2); 2829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2845f1ad066SMatthew G Knepley } 2855f1ad066SMatthew G Knepley 2865f1ad066SMatthew G Knepley /*@ 287bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2885f1ad066SMatthew G Knepley 28920f4b53cSBarry Smith Not Collective 2905f1ad066SMatthew G Knepley 2915f1ad066SMatthew G Knepley Input Parameters: 292bb7acecfSBarry Smith + v - The `Vec` 293bb7acecfSBarry Smith - dm - The `DM` 2945f1ad066SMatthew G Knepley 29520f4b53cSBarry Smith Level: developer 29620f4b53cSBarry Smith 297bb7acecfSBarry Smith Note: 298bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 299d9805387SMatthew G. Knepley 300bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 301bb7acecfSBarry Smith 3021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3035f1ad066SMatthew G Knepley @*/ 304d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 305d71ae5a4SJacob Faibussowitsch { 3065f1ad066SMatthew G Knepley PetscFunctionBegin; 3075f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 308d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3115f1ad066SMatthew G Knepley } 3125f1ad066SMatthew G Knepley 313521d9a4cSLisandro Dalcin /*@C 314bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3158f1509bcSBarry Smith 31620f4b53cSBarry Smith Logically Collective 3178f1509bcSBarry Smith 3188f1509bcSBarry Smith Input Parameters: 319bb7acecfSBarry Smith + dm - the `DM` context 3208f1509bcSBarry Smith - ctype - the matrix type 3218f1509bcSBarry Smith 32220f4b53cSBarry Smith Options Database Key: 3238f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3248f1509bcSBarry Smith 3258f1509bcSBarry Smith Level: intermediate 3268f1509bcSBarry Smith 3271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 328bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3298f1509bcSBarry Smith @*/ 330d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 331d71ae5a4SJacob Faibussowitsch { 3328f1509bcSBarry Smith PetscFunctionBegin; 3338f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3348f1509bcSBarry Smith dm->coloringtype = ctype; 3353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3368f1509bcSBarry Smith } 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith /*@C 339bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 340521d9a4cSLisandro Dalcin 34120f4b53cSBarry Smith Logically Collective 342521d9a4cSLisandro Dalcin 343521d9a4cSLisandro Dalcin Input Parameter: 344bb7acecfSBarry Smith . dm - the `DM` context 3458f1509bcSBarry Smith 3468f1509bcSBarry Smith Output Parameter: 3478f1509bcSBarry Smith . ctype - the matrix type 3488f1509bcSBarry Smith 34920f4b53cSBarry Smith Options Database Key: 3508f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3518f1509bcSBarry Smith 3528f1509bcSBarry Smith Level: intermediate 3538f1509bcSBarry Smith 3541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 355bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3568f1509bcSBarry Smith @*/ 357d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 358d71ae5a4SJacob Faibussowitsch { 3598f1509bcSBarry Smith PetscFunctionBegin; 3608f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3618f1509bcSBarry Smith *ctype = dm->coloringtype; 3623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3638f1509bcSBarry Smith } 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith /*@C 366bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3678f1509bcSBarry Smith 36820f4b53cSBarry Smith Logically Collective 3698f1509bcSBarry Smith 3708f1509bcSBarry Smith Input Parameters: 371bb7acecfSBarry Smith + dm - the `DM` context 372bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 373521d9a4cSLisandro Dalcin 37420f4b53cSBarry Smith Options Database Key: 375bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 376521d9a4cSLisandro Dalcin 377521d9a4cSLisandro Dalcin Level: intermediate 378521d9a4cSLisandro Dalcin 3791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 380521d9a4cSLisandro Dalcin @*/ 381d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 382d71ae5a4SJacob Faibussowitsch { 383521d9a4cSLisandro Dalcin PetscFunctionBegin; 384521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3859566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->mattype)); 3869566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 3873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388521d9a4cSLisandro Dalcin } 389521d9a4cSLisandro Dalcin 390c0dedaeaSBarry Smith /*@C 39120f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 392c0dedaeaSBarry Smith 39320f4b53cSBarry Smith Logically Collective 394c0dedaeaSBarry Smith 395c0dedaeaSBarry Smith Input Parameter: 396bb7acecfSBarry Smith . dm - the `DM` context 397c0dedaeaSBarry Smith 398c0dedaeaSBarry Smith Output Parameter: 399c0dedaeaSBarry Smith . ctype - the matrix type 400c0dedaeaSBarry Smith 401c0dedaeaSBarry Smith Level: intermediate 402c0dedaeaSBarry Smith 4031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()` 404c0dedaeaSBarry Smith @*/ 405d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 406d71ae5a4SJacob Faibussowitsch { 407c0dedaeaSBarry Smith PetscFunctionBegin; 408c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 409c0dedaeaSBarry Smith *ctype = dm->mattype; 4103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 411c0dedaeaSBarry Smith } 412c0dedaeaSBarry Smith 413c688c046SMatthew G Knepley /*@ 414bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 415c688c046SMatthew G Knepley 41620f4b53cSBarry Smith Not Collective 417c688c046SMatthew G Knepley 418c688c046SMatthew G Knepley Input Parameter: 419bb7acecfSBarry Smith . A - The `Mat` 420c688c046SMatthew G Knepley 421c688c046SMatthew G Knepley Output Parameter: 422bb7acecfSBarry Smith . dm - The `DM` 423c688c046SMatthew G Knepley 424c688c046SMatthew G Knepley Level: intermediate 425c688c046SMatthew G Knepley 426bb7acecfSBarry Smith Note: 427bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 428bb7acecfSBarry Smith 429bb7acecfSBarry Smith Developer Note: 430bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4318f1509bcSBarry Smith 4321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 433c688c046SMatthew G Knepley @*/ 434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 435d71ae5a4SJacob Faibussowitsch { 436c688c046SMatthew G Knepley PetscFunctionBegin; 437c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 438c688c046SMatthew G Knepley PetscValidPointer(dm, 2); 4399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 441c688c046SMatthew G Knepley } 442c688c046SMatthew G Knepley 443c688c046SMatthew G Knepley /*@ 444bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 445c688c046SMatthew G Knepley 44620f4b53cSBarry Smith Not Collective 447c688c046SMatthew G Knepley 448c688c046SMatthew G Knepley Input Parameters: 44920f4b53cSBarry Smith + A - The `Mat` 45020f4b53cSBarry Smith - dm - The `DM` 451c688c046SMatthew G Knepley 452bb7acecfSBarry Smith Level: developer 453c688c046SMatthew G Knepley 454bb7acecfSBarry Smith Note: 455bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 456bb7acecfSBarry Smith 457bb7acecfSBarry Smith Developer Note: 458bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 459bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4608f1509bcSBarry Smith 4611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 462c688c046SMatthew G Knepley @*/ 463d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 464d71ae5a4SJacob Faibussowitsch { 465c688c046SMatthew G Knepley PetscFunctionBegin; 466c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4678865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4689566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470c688c046SMatthew G Knepley } 471c688c046SMatthew G Knepley 4729a42bb27SBarry Smith /*@C 473bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4749a42bb27SBarry Smith 47520f4b53cSBarry Smith Logically Collective 4769a42bb27SBarry Smith 477d8d19677SJose E. Roman Input Parameters: 478bb7acecfSBarry Smith + da - the `DM` context 479bb7acecfSBarry Smith - prefix - the prefix to prepend 4809a42bb27SBarry Smith 48120f4b53cSBarry Smith Level: advanced 48220f4b53cSBarry Smith 48320f4b53cSBarry Smith Note: 4849a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4859a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 4869a42bb27SBarry Smith 4871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 4889a42bb27SBarry Smith @*/ 489d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 490d71ae5a4SJacob Faibussowitsch { 4919a42bb27SBarry Smith PetscFunctionBegin; 4929a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 4941baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 4951baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 4963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4979a42bb27SBarry Smith } 4989a42bb27SBarry Smith 49931697293SDave May /*@C 500da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 501bb7acecfSBarry Smith `DM` options in the options database. 50231697293SDave May 50320f4b53cSBarry Smith Logically Collective 50431697293SDave May 50531697293SDave May Input Parameters: 506bb7acecfSBarry Smith + dm - the `DM` context 507bb7acecfSBarry Smith - prefix - the string to append to the current prefix 50831697293SDave May 50920f4b53cSBarry Smith Level: advanced 51020f4b53cSBarry Smith 51120f4b53cSBarry Smith Note: 512bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 51331697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 51431697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 51531697293SDave May 5161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 51731697293SDave May @*/ 518d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 519d71ae5a4SJacob Faibussowitsch { 52031697293SDave May PetscFunctionBegin; 52131697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5229566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52431697293SDave May } 52531697293SDave May 52631697293SDave May /*@C 52731697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 528bb7acecfSBarry Smith DM options in the options database. 52931697293SDave May 53031697293SDave May Not Collective 53131697293SDave May 5322fe279fdSBarry Smith Input Parameter: 533bb7acecfSBarry Smith . dm - the `DM` context 53431697293SDave May 5352fe279fdSBarry Smith Output Parameter: 53631697293SDave May . prefix - pointer to the prefix string used is returned 53731697293SDave May 53831697293SDave May Level: advanced 53931697293SDave May 54020f4b53cSBarry Smith Fortran Note: 54120f4b53cSBarry Smith Pass in a string 'prefix' of 54220f4b53cSBarry Smith sufficient length to hold the prefix. 54320f4b53cSBarry Smith 5441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 54531697293SDave May @*/ 546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 547d71ae5a4SJacob Faibussowitsch { 54831697293SDave May PetscFunctionBegin; 54931697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55231697293SDave May } 55331697293SDave May 55462e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 555d71ae5a4SJacob Faibussowitsch { 5566eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 55788bdff64SToby Isaac 55888bdff64SToby Isaac PetscFunctionBegin; 559aab5bcd8SJed Brown *ncrefct = 0; 56088bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 56188bdff64SToby Isaac refct--; 56288bdff64SToby Isaac if (recurseCoarse) { 56388bdff64SToby Isaac PetscInt coarseCount; 56488bdff64SToby Isaac 56562e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 56688bdff64SToby Isaac refct += coarseCount; 56788bdff64SToby Isaac } 56888bdff64SToby Isaac } 56988bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 57088bdff64SToby Isaac refct--; 57188bdff64SToby Isaac if (recurseFine) { 57288bdff64SToby Isaac PetscInt fineCount; 57388bdff64SToby Isaac 57462e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 57588bdff64SToby Isaac refct += fineCount; 57688bdff64SToby Isaac } 57788bdff64SToby Isaac } 57888bdff64SToby Isaac *ncrefct = refct; 5793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58088bdff64SToby Isaac } 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 58362e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 58462e5d2d2SJDBetteridge { 58562e5d2d2SJDBetteridge PetscFunctionBegin; 58662e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 5873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58862e5d2d2SJDBetteridge } 58962e5d2d2SJDBetteridge 590d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 591d71ae5a4SJacob Faibussowitsch { 5925d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 593354557abSToby Isaac 594354557abSToby Isaac PetscFunctionBegin; 595354557abSToby Isaac /* destroy the labels */ 596354557abSToby Isaac while (next) { 597354557abSToby Isaac DMLabelLink tmp = next->next; 598354557abSToby Isaac 5995d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 600ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6019566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6029566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 603354557abSToby Isaac next = tmp; 604354557abSToby Isaac } 6055d80c0bfSVaclav Hapla dm->labels = NULL; 6063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 607354557abSToby Isaac } 608354557abSToby Isaac 609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 610d71ae5a4SJacob Faibussowitsch { 6116858538eSMatthew G. Knepley PetscFunctionBegin; 6126858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6136858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6146858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6156858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6166858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6186858538eSMatthew G. Knepley } 6196858538eSMatthew G. Knepley 6201fb7b255SJunchao Zhang /*@C 621bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 62247c6ae99SBarry Smith 62320f4b53cSBarry Smith Collective 62447c6ae99SBarry Smith 62547c6ae99SBarry Smith Input Parameter: 626bb7acecfSBarry Smith . dm - the `DM` object to destroy 62747c6ae99SBarry Smith 62847c6ae99SBarry Smith Level: developer 62947c6ae99SBarry Smith 6301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 63147c6ae99SBarry Smith @*/ 632d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 633d71ae5a4SJacob Faibussowitsch { 6346eb26441SStefano Zampini PetscInt cnt; 635dfe15315SJed Brown DMNamedVecLink nlink, nnext; 63647c6ae99SBarry Smith 63747c6ae99SBarry Smith PetscFunctionBegin; 6383ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 6396bf464f9SBarry Smith PetscValidHeaderSpecific((*dm), DM_CLASSID, 1); 64087e657c6SBarry Smith 64188bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 64262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 64388bdff64SToby Isaac --((PetscObject)(*dm))->refct; 6449371c9d4SSatish Balay if (--cnt > 0) { 6459371c9d4SSatish Balay *dm = NULL; 6463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6479371c9d4SSatish Balay } 6483ba16761SJacob Faibussowitsch if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 6496bf464f9SBarry Smith ((PetscObject)(*dm))->refct = 0; 6506eb26441SStefano Zampini 6519566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6529566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 6536eb26441SStefano Zampini 654f490541aSPeter Brune nnext = (*dm)->namedglobal; 6550298fd71SBarry Smith (*dm)->namedglobal = NULL; 656f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named vectors */ 6572348bcf4SPeter Brune nnext = nlink->next; 6587a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6599566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6619566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 6622348bcf4SPeter Brune } 663f490541aSPeter Brune nnext = (*dm)->namedlocal; 6640298fd71SBarry Smith (*dm)->namedlocal = NULL; 665f490541aSPeter Brune for (nlink = nnext; nlink; nlink = nnext) { /* Destroy the named local vectors */ 666f490541aSPeter Brune nnext = nlink->next; 6677a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN, ((PetscObject)*dm)->comm, PETSC_ERR_ARG_WRONGSTATE, "DM still has Vec named '%s' checked out", nlink->name); 6689566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6709566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 671f490541aSPeter Brune } 6722348bcf4SPeter Brune 673b17ce1afSJed Brown /* Destroy the list of hooks */ 674c833c3b5SJed Brown { 675c833c3b5SJed Brown DMCoarsenHookLink link, next; 676b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 677b17ce1afSJed Brown next = link->next; 6789566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 679b17ce1afSJed Brown } 6800298fd71SBarry Smith (*dm)->coarsenhook = NULL; 681c833c3b5SJed Brown } 682c833c3b5SJed Brown { 683c833c3b5SJed Brown DMRefineHookLink link, next; 684c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 685c833c3b5SJed Brown next = link->next; 6869566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 687c833c3b5SJed Brown } 6880298fd71SBarry Smith (*dm)->refinehook = NULL; 689c833c3b5SJed Brown } 690be081cd6SPeter Brune { 691be081cd6SPeter Brune DMSubDomainHookLink link, next; 692be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 693be081cd6SPeter Brune next = link->next; 6949566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 695be081cd6SPeter Brune } 6960298fd71SBarry Smith (*dm)->subdomainhook = NULL; 697be081cd6SPeter Brune } 698baf369e7SPeter Brune { 699baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 700baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 701baf369e7SPeter Brune next = link->next; 7029566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 703baf369e7SPeter Brune } 7040298fd71SBarry Smith (*dm)->gtolhook = NULL; 705baf369e7SPeter Brune } 706d4d07f1eSToby Isaac { 707d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 708d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 709d4d07f1eSToby Isaac next = link->next; 7109566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 711d4d07f1eSToby Isaac } 712d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 713d4d07f1eSToby Isaac } 714aa1993deSMatthew G Knepley /* Destroy the work arrays */ 715aa1993deSMatthew G Knepley { 716aa1993deSMatthew G Knepley DMWorkLink link, next; 717*442f3b32SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (*dm)->workout, (*dm)->workout->mem); 718aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 719aa1993deSMatthew G Knepley next = link->next; 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7219566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 722aa1993deSMatthew G Knepley } 7230298fd71SBarry Smith (*dm)->workin = NULL; 724aa1993deSMatthew G Knepley } 725c58f1c22SToby Isaac /* destroy the labels */ 7269566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 727f4cdcedcSVaclav Hapla /* destroy the fields */ 7289566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 729f4cdcedcSVaclav Hapla /* destroy the boundaries */ 730e6f8dbb6SToby Isaac { 731e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 732e6f8dbb6SToby Isaac while (next) { 733e6f8dbb6SToby Isaac DMBoundary b = next; 734e6f8dbb6SToby Isaac 735e6f8dbb6SToby Isaac next = b->next; 7369566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 737e6f8dbb6SToby Isaac } 738e6f8dbb6SToby Isaac } 739b17ce1afSJed Brown 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74352536dc3SBarry Smith 74448a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7459566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7469566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7489566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74988ed4aceSMatthew G Knepley 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 7529566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 757736995cdSBlaise Bourdin if ((*dm)->useNatural) { 75848a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 760736995cdSBlaise Bourdin } 7619a2a23afSMatthew G. Knepley { 7629a2a23afSMatthew G. Knepley Vec *auxData; 7639a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 7649a2a23afSMatthew G. Knepley 7659566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n)); 7669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &auxData)); 7679566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData)); 7689566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 7699566063dSJacob Faibussowitsch PetscCall(PetscFree(auxData)); 7709566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 7719a2a23afSMatthew G. Knepley } 77248a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7736eb26441SStefano Zampini 7749566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 77548a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7769566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7774fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7789566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7799566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7806858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7816858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7829566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7839566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7856725e60dSJed Brown PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local)); 7866725e60dSJed Brown PetscCall(VecDestroy(&(*dm)->periodic.affine)); 7876636e97aSMatthew G Knepley 7889566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7899566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 790e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7919566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 792732e2eb9SMatthew G Knepley 79348a46eb9SPierre Jolivet if ((*dm)->ops->destroy) PetscCall((*(*dm)->ops->destroy)(*dm)); 7949566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 795f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7969566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7979566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 798f918ec44SMatthew G. Knepley #endif 799435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 8009566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 8013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80247c6ae99SBarry Smith } 80347c6ae99SBarry Smith 804d7bf68aeSBarry Smith /*@ 805bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 806d7bf68aeSBarry Smith 80720f4b53cSBarry Smith Collective 808d7bf68aeSBarry Smith 809d7bf68aeSBarry Smith Input Parameter: 810bb7acecfSBarry Smith . dm - the `DM` object to setup 811d7bf68aeSBarry Smith 812bb7acecfSBarry Smith Level: intermediate 813d7bf68aeSBarry Smith 814bb7acecfSBarry Smith Note: 815bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 816bb7acecfSBarry Smith 8171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 818d7bf68aeSBarry Smith @*/ 819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 820d71ae5a4SJacob Faibussowitsch { 821d7bf68aeSBarry Smith PetscFunctionBegin; 822171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8233ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 824dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8258387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 827d7bf68aeSBarry Smith } 828d7bf68aeSBarry Smith 829d7bf68aeSBarry Smith /*@ 830bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 831d7bf68aeSBarry Smith 83220f4b53cSBarry Smith Collective 833d7bf68aeSBarry Smith 834d7bf68aeSBarry Smith Input Parameter: 835bb7acecfSBarry Smith . dm - the `DM` object to set options for 836d7bf68aeSBarry Smith 83720f4b53cSBarry Smith Options Database Keys: 838bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 839bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 840bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 841a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 84220f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 84320f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8449318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 845cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8465dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8479318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8489318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8499318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 850bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 851bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8529318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 8539318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8549318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8559318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 856bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8579318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8589318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8599318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8609318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 861bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8629318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8639318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8649318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8659318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 866bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 867d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 868d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 869d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 870d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 871d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 872909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 873909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8749318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8759318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8769318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87720f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 87820f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 879bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 880bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 881bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 882bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 883bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 884384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 885d7bf68aeSBarry Smith 88695eb5ee5SVaclav Hapla Level: intermediate 88795eb5ee5SVaclav Hapla 8881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 889bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 890bb7acecfSBarry Smith `DMSetOptionsPrefix()`, `DM`, `DMType`, `DMPLEX`, `DMDA` 891d7bf68aeSBarry Smith @*/ 892d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 893d71ae5a4SJacob Faibussowitsch { 8947781c08eSBarry Smith char typeName[256]; 895ca266f36SBarry Smith PetscBool flg; 896d7bf68aeSBarry Smith 897d7bf68aeSBarry Smith PetscFunctionBegin; 898171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89949be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 9009566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 9019566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 902dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 903d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9061baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9079566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9081baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 909863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9119566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 912dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 913f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 914dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 915d0609cedSBarry Smith PetscOptionsEnd(); 9163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 917d7bf68aeSBarry Smith } 918d7bf68aeSBarry Smith 919fc9bc008SSatish Balay /*@C 920bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 921fe2efc57SMark 92220f4b53cSBarry Smith Collective 923fe2efc57SMark 924fe2efc57SMark Input Parameters: 925bb7acecfSBarry Smith + dm - the `DM` object 92620f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 927bb7acecfSBarry Smith - optionname - option string that is used to activate viewing 928fe2efc57SMark 929fe2efc57SMark Level: intermediate 930bb7acecfSBarry Smith 931bb7acecfSBarry Smith Note: 932bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 933bb7acecfSBarry Smith 9341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`, `PetscObjectViewFromOptions()` 935fe2efc57SMark @*/ 936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 937d71ae5a4SJacob Faibussowitsch { 938fe2efc57SMark PetscFunctionBegin; 939fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9409566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 942fe2efc57SMark } 943fe2efc57SMark 944fe2efc57SMark /*@C 945bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 946bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94747c6ae99SBarry Smith 94820f4b53cSBarry Smith Collective 94947c6ae99SBarry Smith 950d8d19677SJose E. Roman Input Parameters: 951bb7acecfSBarry Smith + dm - the `DM` object to view 95247c6ae99SBarry Smith - v - the viewer 95347c6ae99SBarry Smith 95420f4b53cSBarry Smith Level: beginner 95520f4b53cSBarry Smith 956cd7e8a5eSksagiyam Notes: 957bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 958bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 959bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 960cd7e8a5eSksagiyam 9611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 96247c6ae99SBarry Smith @*/ 963d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 964d71ae5a4SJacob Faibussowitsch { 96532c0f0efSBarry Smith PetscBool isbinary; 96676a8abe0SBarry Smith PetscMPIInt size; 96776a8abe0SBarry Smith PetscViewerFormat format; 96847c6ae99SBarry Smith 96947c6ae99SBarry Smith PetscFunctionBegin; 970171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 97148a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 972b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 97374903a4fSStefano Zampini /* Ideally, we would like to have this test on. 97474903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97574903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97674903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97774903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 97874903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 97974903a4fSStefano Zampini in an error here */ 98074903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9819566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 982b1b135c8SBarry Smith 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9853ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9869566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 98832c0f0efSBarry Smith if (isbinary) { 98955849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 99032c0f0efSBarry Smith char type[256]; 99132c0f0efSBarry Smith 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 993c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99532c0f0efSBarry Smith } 996dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99847c6ae99SBarry Smith } 99947c6ae99SBarry Smith 100047c6ae99SBarry Smith /*@ 1001bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1002bb7acecfSBarry Smith that is it has no ghost locations. 100347c6ae99SBarry Smith 100420f4b53cSBarry Smith Collective 100547c6ae99SBarry Smith 100647c6ae99SBarry Smith Input Parameter: 1007bb7acecfSBarry Smith . dm - the `DM` object 100847c6ae99SBarry Smith 100947c6ae99SBarry Smith Output Parameter: 101047c6ae99SBarry Smith . vec - the global vector 101147c6ae99SBarry Smith 1012073dac72SJed Brown Level: beginner 101347c6ae99SBarry Smith 10141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1015bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101647c6ae99SBarry Smith @*/ 1017d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1018d71ae5a4SJacob Faibussowitsch { 101947c6ae99SBarry Smith PetscFunctionBegin; 1020171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1021b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1022dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 102376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1024c6b011d8SStefano Zampini DM vdm; 1025c6b011d8SStefano Zampini 10269566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10277a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1028c6b011d8SStefano Zampini } 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103047c6ae99SBarry Smith } 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith /*@ 1033bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith Not Collective 103647c6ae99SBarry Smith 103747c6ae99SBarry Smith Input Parameter: 1038bb7acecfSBarry Smith . dm - the `DM` object 103947c6ae99SBarry Smith 104047c6ae99SBarry Smith Output Parameter: 104147c6ae99SBarry Smith . vec - the local vector 104247c6ae99SBarry Smith 1043073dac72SJed Brown Level: beginner 104447c6ae99SBarry Smith 104520f4b53cSBarry Smith Note: 1046bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1047bb7acecfSBarry Smith 10481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1049bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 105047c6ae99SBarry Smith @*/ 1051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1052d71ae5a4SJacob Faibussowitsch { 105347c6ae99SBarry Smith PetscFunctionBegin; 1054171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1055b9d85ea2SLisandro Dalcin PetscValidPointer(vec, 2); 1056dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1058c6b011d8SStefano Zampini DM vdm; 1059c6b011d8SStefano Zampini 10609566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10617a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1062c6b011d8SStefano Zampini } 10633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 106447c6ae99SBarry Smith } 106547c6ae99SBarry Smith 10661411c6eeSJed Brown /*@ 1067bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10681411c6eeSJed Brown 106920f4b53cSBarry Smith Collective 10701411c6eeSJed Brown 10711411c6eeSJed Brown Input Parameter: 1072bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10731411c6eeSJed Brown 10741411c6eeSJed Brown Output Parameter: 10751411c6eeSJed Brown . ltog - the mapping 10761411c6eeSJed Brown 1077bb7acecfSBarry Smith Level: advanced 10781411c6eeSJed Brown 10791411c6eeSJed Brown Notes: 1080bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10811411c6eeSJed Brown 1082bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1083bb7acecfSBarry Smith need to use this function with those objects. 1084bb7acecfSBarry Smith 1085bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1086bb7acecfSBarry Smith 10871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1088bb7acecfSBarry Smith `DMCreateMatrix()` 10891411c6eeSJed Brown @*/ 1090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1091d71ae5a4SJacob Faibussowitsch { 10920be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10931411c6eeSJed Brown 10941411c6eeSJed Brown PetscFunctionBegin; 10951411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10961411c6eeSJed Brown PetscValidPointer(ltog, 2); 10971411c6eeSJed Brown if (!dm->ltogmap) { 109837d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 109937d0c07bSMatthew G Knepley 11009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 110137d0c07bSMatthew G Knepley if (section) { 1102a974ec88SMatthew G. Knepley const PetscInt *cdofs; 110337d0c07bSMatthew G Knepley PetscInt *ltog; 1104ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110537d0c07bSMatthew G Knepley 11069566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 111037d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1111e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 111237d0c07bSMatthew G Knepley 111337d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11181a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11191a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1120ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11215227eafbSStefano Zampini 1122e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11235227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1124e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1125e6befd46SJed Brown cind++; 1126e6befd46SJed Brown } else { 11275227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1128e6befd46SJed Brown } 112937d0c07bSMatthew G Knepley } 113037d0c07bSMatthew G Knepley } 1131bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11329371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11339371c9d4SSatish Balay bsLocal[1] = bs; 11349566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11359371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11369371c9d4SSatish Balay bs = 1; 11379371c9d4SSatish Balay } else { 11389371c9d4SSatish Balay bs = bsMinMax[0]; 11399371c9d4SSatish Balay } 11407591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11417591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1142ccf3bd66SMatthew G. Knepley if (bs > 1) { 1143ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1144ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1145ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1146ca469d19SJed Brown } 1147ccf3bd66SMatthew G. Knepley n /= bs; 1148ccf3bd66SMatthew G. Knepley } 11499566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1150dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 115137d0c07bSMatthew G Knepley } 11521411c6eeSJed Brown *ltog = dm->ltogmap; 11533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11541411c6eeSJed Brown } 11551411c6eeSJed Brown 11561411c6eeSJed Brown /*@ 1157bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11581411c6eeSJed Brown 11591411c6eeSJed Brown Not Collective 11601411c6eeSJed Brown 11611411c6eeSJed Brown Input Parameter: 1162bb7acecfSBarry Smith . dm - the `DM` with block structure 11631411c6eeSJed Brown 11641411c6eeSJed Brown Output Parameter: 11651411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11661411c6eeSJed Brown 11671411c6eeSJed Brown Level: intermediate 11681411c6eeSJed Brown 1169bb7acecfSBarry Smith Note: 1170bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1171bb7acecfSBarry Smith 1172bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1173bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1174bb7acecfSBarry Smith 11751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11761411c6eeSJed Brown @*/ 1177d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1178d71ae5a4SJacob Faibussowitsch { 11791411c6eeSJed Brown PetscFunctionBegin; 11801411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1181534a8f05SLisandro Dalcin PetscValidIntPointer(bs, 2); 11827a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11831411c6eeSJed Brown *bs = dm->bs; 11843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11851411c6eeSJed Brown } 11861411c6eeSJed Brown 118748eeb7c8SBarry Smith /*@C 1188bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1189bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 119047c6ae99SBarry Smith 119120f4b53cSBarry Smith Collective 119247c6ae99SBarry Smith 1193d8d19677SJose E. Roman Input Parameters: 1194bb7acecfSBarry Smith + dmc - the `DM` object 1195bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119647c6ae99SBarry Smith 1197d8d19677SJose E. Roman Output Parameters: 119847c6ae99SBarry Smith + mat - the interpolation 1199bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 120047c6ae99SBarry Smith 120147c6ae99SBarry Smith Level: developer 120247c6ae99SBarry Smith 120395452b02SPatrick Sanan Notes: 1204bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1205bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1206d52bd9f3SBarry Smith 1207bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1208bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 120985afcc9aSBarry Smith 12101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 121147c6ae99SBarry Smith @*/ 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1213d71ae5a4SJacob Faibussowitsch { 121447c6ae99SBarry Smith PetscFunctionBegin; 1215a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1216a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 1217c7d20fa0SStefano Zampini PetscValidPointer(mat, 3); 12189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1219dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122247c6ae99SBarry Smith } 122347c6ae99SBarry Smith 12243ad4599aSBarry Smith /*@ 1225bb7acecfSBarry Smith DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is the transpose of the interpolation between the `DM`. 1226bb7acecfSBarry Smith xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) restriction. In other words xcoarse is the coarse 1227bb7acecfSBarry Smith representation of xfine. 12282ed6491fSPatrick Sanan 12292ed6491fSPatrick Sanan Input Parameters: 1230bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1231bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12322ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12332ed6491fSPatrick Sanan 12342ed6491fSPatrick Sanan Output Parameter: 12352ed6491fSPatrick Sanan . scale - the scaled vector 12362ed6491fSPatrick Sanan 1237bb7acecfSBarry Smith Level: advanced 12382ed6491fSPatrick Sanan 123920f4b53cSBarry Smith Developer Note: 1240bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1241e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1242e9c74fd6SRichard Tran Mills 12431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, DMCreateRestriction()`, `DMCreateGlobalVector()` 12442ed6491fSPatrick Sanan @*/ 1245d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1246d71ae5a4SJacob Faibussowitsch { 12472ed6491fSPatrick Sanan Vec fine; 12482ed6491fSPatrick Sanan PetscScalar one = 1.0; 12499704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1250e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12519704db99SRichard Tran Mills #endif 12522ed6491fSPatrick Sanan 12532ed6491fSPatrick Sanan PetscFunctionBegin; 12549566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12559566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12569566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12579704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12589704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12599704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12609704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12619566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1262e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12639566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12649566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12659566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 126683aa49f4SRichard Tran Mills } 12679704db99SRichard Tran Mills #endif 12689566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12709566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12722ed6491fSPatrick Sanan } 12732ed6491fSPatrick Sanan 12742ed6491fSPatrick Sanan /*@ 1275bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1276bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12773ad4599aSBarry Smith 127820f4b53cSBarry Smith Collective 12793ad4599aSBarry Smith 1280d8d19677SJose E. Roman Input Parameters: 1281bb7acecfSBarry Smith + dmc - the `DM` object 1282bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12833ad4599aSBarry Smith 12843ad4599aSBarry Smith Output Parameter: 12853ad4599aSBarry Smith . mat - the restriction 12863ad4599aSBarry Smith 12873ad4599aSBarry Smith Level: developer 12883ad4599aSBarry Smith 1289bb7acecfSBarry Smith Note: 1290bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1291bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12923ad4599aSBarry Smith 12931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12943ad4599aSBarry Smith @*/ 1295d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1296d71ae5a4SJacob Faibussowitsch { 12973ad4599aSBarry Smith PetscFunctionBegin; 1298a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1299a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13005a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13019566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1302dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13039566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13053ad4599aSBarry Smith } 13063ad4599aSBarry Smith 130747c6ae99SBarry Smith /*@ 1308bb7acecfSBarry Smith DMCreateInjection - Gets injection matrix between two `DM` objects. This is an operator that applied to a vector obtained with 1309bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting the values 1310bb7acecfSBarry Smith on the coarse grid points. This compares to the operator obtained by `DMCreateRestriction()` or the transpose of the operator obtained 1311bb7acecfSBarry Smith by `DMCreateInterpolation()` that uses a "local weighted average" of the values around the coarse grid point as the coarse grid value. 131247c6ae99SBarry Smith 131320f4b53cSBarry Smith Collective 131447c6ae99SBarry Smith 1315d8d19677SJose E. Roman Input Parameters: 1316bb7acecfSBarry Smith + dac - the `DM` object 1317bb7acecfSBarry Smith - daf - the second, finer `DM` object 131847c6ae99SBarry Smith 131947c6ae99SBarry Smith Output Parameter: 13206dbf9973SLawrence Mitchell . mat - the injection 132147c6ae99SBarry Smith 132247c6ae99SBarry Smith Level: developer 132347c6ae99SBarry Smith 1324bb7acecfSBarry Smith Note: 1325bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1326bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 132785afcc9aSBarry Smith 13281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1329bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133047c6ae99SBarry Smith @*/ 1331d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1332d71ae5a4SJacob Faibussowitsch { 133347c6ae99SBarry Smith PetscFunctionBegin; 1334a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1335a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13365a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1338dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134147c6ae99SBarry Smith } 134247c6ae99SBarry Smith 1343b412c318SBarry Smith /*@ 1344bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1345bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1346bd041c0cSMatthew G. Knepley 134720f4b53cSBarry Smith Collective 1348bd041c0cSMatthew G. Knepley 1349d8d19677SJose E. Roman Input Parameters: 1350bb7acecfSBarry Smith + dmc - the target `DM` object 1351bb7acecfSBarry Smith - dmf - the source `DM` object 1352bd041c0cSMatthew G. Knepley 1353bd041c0cSMatthew G. Knepley Output Parameter: 1354b4937a87SMatthew G. Knepley . mat - the mass matrix 1355bd041c0cSMatthew G. Knepley 1356bd041c0cSMatthew G. Knepley Level: developer 1357bd041c0cSMatthew G. Knepley 1358bb7acecfSBarry Smith Notes: 1359bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1360bb7acecfSBarry Smith 136120f4b53cSBarry Smith if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1362bb7acecfSBarry Smith 13631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1364bd041c0cSMatthew G. Knepley @*/ 1365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1366d71ae5a4SJacob Faibussowitsch { 1367bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1368b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1369b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13705a84ad33SLisandro Dalcin PetscValidPointer(mat, 3); 13715b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1372dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13735b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 13743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1375b4937a87SMatthew G. Knepley } 1376b4937a87SMatthew G. Knepley 1377b4937a87SMatthew G. Knepley /*@ 1378bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1379b4937a87SMatthew G. Knepley 138020f4b53cSBarry Smith Collective 1381b4937a87SMatthew G. Knepley 1382b4937a87SMatthew G. Knepley Input Parameter: 1383bb7acecfSBarry Smith . dm - the `DM` object 1384b4937a87SMatthew G. Knepley 1385b4937a87SMatthew G. Knepley Output Parameter: 1386bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1387b4937a87SMatthew G. Knepley 1388b4937a87SMatthew G. Knepley Level: developer 1389b4937a87SMatthew G. Knepley 1390bb7acecfSBarry Smith Note: 1391bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1392bb7acecfSBarry Smith 13931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1394b4937a87SMatthew G. Knepley @*/ 1395d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1396d71ae5a4SJacob Faibussowitsch { 1397b4937a87SMatthew G. Knepley PetscFunctionBegin; 1398b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1399b4937a87SMatthew G. Knepley PetscValidPointer(lm, 2); 1400dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1402bd041c0cSMatthew G. Knepley } 1403bd041c0cSMatthew G. Knepley 1404bd041c0cSMatthew G. Knepley /*@ 1405bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1406bb7acecfSBarry Smith of a PDE on the `DM`. 140747c6ae99SBarry Smith 140820f4b53cSBarry Smith Collective 140947c6ae99SBarry Smith 1410d8d19677SJose E. Roman Input Parameters: 1411bb7acecfSBarry Smith + dm - the `DM` object 1412bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 141347c6ae99SBarry Smith 141447c6ae99SBarry Smith Output Parameter: 141547c6ae99SBarry Smith . coloring - the coloring 141647c6ae99SBarry Smith 14171bf8429eSBarry Smith Level: developer 14181bf8429eSBarry Smith 1419ec5066bdSBarry Smith Notes: 1420bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1421bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1422ec5066bdSBarry Smith 1423bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14241bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14251bf8429eSBarry Smith otherwise an error will be generated. 1426ec5066bdSBarry Smith 14271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1428aab9d709SJed Brown @*/ 1429d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1430d71ae5a4SJacob Faibussowitsch { 143147c6ae99SBarry Smith PetscFunctionBegin; 1432171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14335a84ad33SLisandro Dalcin PetscValidPointer(coloring, 3); 1434dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 143647c6ae99SBarry Smith } 143747c6ae99SBarry Smith 1438b412c318SBarry Smith /*@ 1439bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144047c6ae99SBarry Smith 144120f4b53cSBarry Smith Collective 144247c6ae99SBarry Smith 144347c6ae99SBarry Smith Input Parameter: 1444bb7acecfSBarry Smith . dm - the `DM` object 144547c6ae99SBarry Smith 144647c6ae99SBarry Smith Output Parameter: 144747c6ae99SBarry Smith . mat - the empty Jacobian 144847c6ae99SBarry Smith 144920f4b53cSBarry Smith Options Database Key: 1450bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1451f27dd7c6SMatthew G. Knepley 145220f4b53cSBarry Smith Level: beginner 145320f4b53cSBarry Smith 145495452b02SPatrick Sanan Notes: 145595452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 145694013140SBarry Smith do not need to do it yourself. 145794013140SBarry Smith 145894013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1459bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146094013140SBarry Smith 1461bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 146294013140SBarry Smith internally by PETSc. 146394013140SBarry Smith 1464bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1465bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 146694013140SBarry Smith 14671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1468aab9d709SJed Brown @*/ 1469d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1470d71ae5a4SJacob Faibussowitsch { 147147c6ae99SBarry Smith PetscFunctionBegin; 1472171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1473064a246eSJacob Faibussowitsch PetscValidPointer(mat, 2); 14749566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1476dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 147776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1478c6b011d8SStefano Zampini DM mdm; 1479c6b011d8SStefano Zampini 14809566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14817a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1482c6b011d8SStefano Zampini } 1483e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1484e5e52638SMatthew G. Knepley if (dm->Nf) { 1485e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1486649ef022SMatthew Knepley PetscInt Nf, f; 1487e571a35bSMatthew G. Knepley 14889566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1489649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1490649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14919566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14929566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14939566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1494649ef022SMatthew Knepley break; 1495e571a35bSMatthew G. Knepley } 1496649ef022SMatthew Knepley } 1497649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1498649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 14999566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15009566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15019566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1502e571a35bSMatthew G. Knepley } 1503e571a35bSMatthew G. Knepley } 1504e571a35bSMatthew G. Knepley } 15059566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150747c6ae99SBarry Smith } 150847c6ae99SBarry Smith 1509732e2eb9SMatthew G Knepley /*@ 1510bb7acecfSBarry Smith DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and `ISLocalToGlobalMapping` will be 1511bb7acecfSBarry Smith properly set, but the data structures to store values in the matrices will not be preallocated. This is most useful to reduce initialization costs when 1512bb7acecfSBarry Smith `MatSetPreallocationCOO()` and `MatSetValuesCOO()` will be used. 1513aa0f6e3cSJed Brown 151420f4b53cSBarry Smith Logically Collective 1515aa0f6e3cSJed Brown 1516aa0f6e3cSJed Brown Input Parameters: 1517bb7acecfSBarry Smith + dm - the `DM` 1518bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1519aa0f6e3cSJed Brown 1520aa0f6e3cSJed Brown Level: developer 1521aa0f6e3cSJed Brown 15221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1523aa0f6e3cSJed Brown @*/ 1524d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1525d71ae5a4SJacob Faibussowitsch { 1526aa0f6e3cSJed Brown PetscFunctionBegin; 1527aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1528aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1530aa0f6e3cSJed Brown } 1531aa0f6e3cSJed Brown 1532aa0f6e3cSJed Brown /*@ 1533bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1534732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1535732e2eb9SMatthew G Knepley 153620f4b53cSBarry Smith Logically Collective 1537732e2eb9SMatthew G Knepley 1538d8d19677SJose E. Roman Input Parameters: 1539bb7acecfSBarry Smith + dm - the `DM` 1540bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1541732e2eb9SMatthew G Knepley 154220f4b53cSBarry Smith Options Database Key: 1543bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1544f27dd7c6SMatthew G. Knepley 154520f4b53cSBarry Smith Level: developer 154620f4b53cSBarry Smith 15471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1548732e2eb9SMatthew G Knepley @*/ 1549d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1550d71ae5a4SJacob Faibussowitsch { 1551732e2eb9SMatthew G Knepley PetscFunctionBegin; 1552732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1553732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1555732e2eb9SMatthew G Knepley } 1556732e2eb9SMatthew G Knepley 1557b06ff27eSHong Zhang /*@ 1558bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1559bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1560b06ff27eSHong Zhang 156120f4b53cSBarry Smith Logically Collective 1562b06ff27eSHong Zhang 1563d8d19677SJose E. Roman Input Parameters: 1564bb7acecfSBarry Smith + dm - the `DM` 1565da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1566b06ff27eSHong Zhang 1567b06ff27eSHong Zhang Level: developer 1568bb7acecfSBarry Smith 15691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1570b06ff27eSHong Zhang @*/ 1571d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1572d71ae5a4SJacob Faibussowitsch { 1573b06ff27eSHong Zhang PetscFunctionBegin; 1574b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1575b06ff27eSHong Zhang dm->structure_only = only; 15763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1577b06ff27eSHong Zhang } 1578b06ff27eSHong Zhang 1579863027abSJed Brown /*@ 1580863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1581863027abSJed Brown 158220f4b53cSBarry Smith Logically Collective 1583863027abSJed Brown 1584863027abSJed Brown Input Parameters: 1585863027abSJed Brown + dm - the `DM` 1586863027abSJed Brown - btype - block by topological point or field node 1587863027abSJed Brown 158820f4b53cSBarry Smith Options Database Key: 15890e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1590863027abSJed Brown 159120f4b53cSBarry Smith Level: advanced 159220f4b53cSBarry Smith 15931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1594863027abSJed Brown @*/ 1595863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1596863027abSJed Brown { 1597863027abSJed Brown PetscFunctionBegin; 1598863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1599863027abSJed Brown dm->blocking_type = btype; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1601863027abSJed Brown } 1602863027abSJed Brown 1603863027abSJed Brown /*@ 1604863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1605863027abSJed Brown 1606863027abSJed Brown Not Collective 1607863027abSJed Brown 16082fe279fdSBarry Smith Input Parameter: 1609863027abSJed Brown . dm - the `DM` 1610863027abSJed Brown 16112fe279fdSBarry Smith Output Parameter: 1612863027abSJed Brown . btype - block by topological point or field node 1613863027abSJed Brown 1614863027abSJed Brown Level: advanced 1615863027abSJed Brown 16161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1617863027abSJed Brown @*/ 1618863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1619863027abSJed Brown { 1620863027abSJed Brown PetscFunctionBegin; 1621863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1622863027abSJed Brown PetscValidPointer(btype, 2); 1623863027abSJed Brown *btype = dm->blocking_type; 16243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1625863027abSJed Brown } 1626863027abSJed Brown 1627a89ea682SMatthew G Knepley /*@C 1628bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1629a89ea682SMatthew G Knepley 1630a89ea682SMatthew G Knepley Not Collective 1631a89ea682SMatthew G Knepley 1632a89ea682SMatthew G Knepley Input Parameters: 1633bb7acecfSBarry Smith + dm - the `DM` object 1634a5b23f4aSJose E. Roman . count - The minimum size 163520f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1636a89ea682SMatthew G Knepley 1637a89ea682SMatthew G Knepley Output Parameter: 1638a89ea682SMatthew G Knepley . array - the work array 1639a89ea682SMatthew G Knepley 1640a89ea682SMatthew G Knepley Level: developer 1641a89ea682SMatthew G Knepley 1642bb7acecfSBarry Smith Note: 1643da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1644bb7acecfSBarry Smith 1645bb7acecfSBarry Smith The array may contain nonzero values 1646bb7acecfSBarry Smith 16471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1648a89ea682SMatthew G Knepley @*/ 1649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1650d71ae5a4SJacob Faibussowitsch { 1651aa1993deSMatthew G Knepley DMWorkLink link; 165269291d52SBarry Smith PetscMPIInt dsize; 1653a89ea682SMatthew G Knepley 1654a89ea682SMatthew G Knepley PetscFunctionBegin; 1655a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1656aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1657*442f3b32SStefano Zampini if (!count) { 1658*442f3b32SStefano Zampini *(void **)mem = NULL; 1659*442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1660*442f3b32SStefano Zampini } 1661aa1993deSMatthew G Knepley if (dm->workin) { 1662aa1993deSMatthew G Knepley link = dm->workin; 1663aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1664aa1993deSMatthew G Knepley } else { 16654dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1666a89ea682SMatthew G Knepley } 16679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(dtype, &dsize)); 16685056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16699566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16709566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1671854ce69bSBarry Smith link->bytes = dsize * count; 1672aa1993deSMatthew G Knepley } 1673aa1993deSMatthew G Knepley link->next = dm->workout; 1674aa1993deSMatthew G Knepley dm->workout = link; 1675cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 167600d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 167700d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 167800d952a4SJed Brown #endif 1679aa1993deSMatthew G Knepley *(void **)mem = link->mem; 16803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1681a89ea682SMatthew G Knepley } 1682a89ea682SMatthew G Knepley 1683aa1993deSMatthew G Knepley /*@C 1684bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1685aa1993deSMatthew G Knepley 1686aa1993deSMatthew G Knepley Not Collective 1687aa1993deSMatthew G Knepley 1688aa1993deSMatthew G Knepley Input Parameters: 1689bb7acecfSBarry Smith + dm - the `DM` object 1690a5b23f4aSJose E. Roman . count - The minimum size 169120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1692aa1993deSMatthew G Knepley 1693aa1993deSMatthew G Knepley Output Parameter: 1694aa1993deSMatthew G Knepley . array - the work array 1695aa1993deSMatthew G Knepley 1696aa1993deSMatthew G Knepley Level: developer 1697aa1993deSMatthew G Knepley 169820f4b53cSBarry Smith Developer Note: 1699bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1700147403d9SBarry Smith 17011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1702aa1993deSMatthew G Knepley @*/ 1703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1704d71ae5a4SJacob Faibussowitsch { 1705aa1993deSMatthew G Knepley DMWorkLink *p, link; 1706aa1993deSMatthew G Knepley 1707aa1993deSMatthew G Knepley PetscFunctionBegin; 1708aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1709aa1993deSMatthew G Knepley PetscValidPointer(mem, 4); 1710*442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1711aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1712aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1713aa1993deSMatthew G Knepley *p = link->next; 1714aa1993deSMatthew G Knepley link->next = dm->workin; 1715aa1993deSMatthew G Knepley dm->workin = link; 17160298fd71SBarry Smith *(void **)mem = NULL; 17173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1718aa1993deSMatthew G Knepley } 1719aa1993deSMatthew G Knepley } 1720aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1721aa1993deSMatthew G Knepley } 1722e7c4fc90SDmitry Karpeev 17238cda7954SMatthew G. Knepley /*@C 1724bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1725bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17268cda7954SMatthew G. Knepley 172720f4b53cSBarry Smith Logically Collective; No Fortran Support 17288cda7954SMatthew G. Knepley 17298cda7954SMatthew G. Knepley Input Parameters: 1730bb7acecfSBarry Smith + dm - The `DM` 17318cda7954SMatthew G. Knepley . field - The field number for the nullspace 17328cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17338cda7954SMatthew G. Knepley 173420f4b53cSBarry Smith Calling sequence of `nullsp`: 1735147403d9SBarry Smith .vb 1736147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1737147403d9SBarry Smith .ve 1738bb7acecfSBarry Smith + dm - The present `DM` 1739bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1740147403d9SBarry Smith . field - The field number in dm 1741147403d9SBarry Smith - nullSpace - The nullspace for the given field 17428cda7954SMatthew G. Knepley 174349762cbcSSatish Balay Level: intermediate 174449762cbcSSatish Balay 17451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1746147403d9SBarry Smith @*/ 1747d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1748d71ae5a4SJacob Faibussowitsch { 1749435a35e8SMatthew G Knepley PetscFunctionBegin; 1750435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17517a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1752435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1754435a35e8SMatthew G Knepley } 1755435a35e8SMatthew G Knepley 17568cda7954SMatthew G. Knepley /*@C 1757bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17588cda7954SMatthew G. Knepley 175920f4b53cSBarry Smith Not Collective; No Fortran Support 17608cda7954SMatthew G. Knepley 17618cda7954SMatthew G. Knepley Input Parameters: 1762bb7acecfSBarry Smith + dm - The `DM` 17638cda7954SMatthew G. Knepley - field - The field number for the nullspace 17648cda7954SMatthew G. Knepley 17658cda7954SMatthew G. Knepley Output Parameter: 17668cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17678cda7954SMatthew G. Knepley 176820f4b53cSBarry Smith Calling sequence of `nullsp`: 1769147403d9SBarry Smith .vb 1770147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1771147403d9SBarry Smith .ve 1772147403d9SBarry Smith + dm - The present DM 1773147403d9SBarry Smith . origField - The field number given above, in the original DM 1774147403d9SBarry Smith . field - The field number in dm 1775147403d9SBarry Smith - nullSpace - The nullspace for the given field 17768cda7954SMatthew G. Knepley 177749762cbcSSatish Balay Level: intermediate 177849762cbcSSatish Balay 17791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1780147403d9SBarry Smith @*/ 1781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1782d71ae5a4SJacob Faibussowitsch { 17830a50eb56SMatthew G. Knepley PetscFunctionBegin; 17840a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1785f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 17867a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 17870a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 17883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17890a50eb56SMatthew G. Knepley } 17900a50eb56SMatthew G. Knepley 17918cda7954SMatthew G. Knepley /*@C 1792bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 17938cda7954SMatthew G. Knepley 179420f4b53cSBarry Smith Logically Collective; No Fortran Support 17958cda7954SMatthew G. Knepley 17968cda7954SMatthew G. Knepley Input Parameters: 1797bb7acecfSBarry Smith + dm - The `DM` 17988cda7954SMatthew G. Knepley . field - The field number for the nullspace 17998cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18008cda7954SMatthew G. Knepley 180120f4b53cSBarry Smith Calling sequence of `nullsp`: 1802147403d9SBarry Smith .vb 1803147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1804147403d9SBarry Smith .ve 1805bb7acecfSBarry Smith + dm - The present `DM` 1806bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1807147403d9SBarry Smith . field - The field number in dm 1808147403d9SBarry Smith - nullSpace - The nullspace for the given field 18098cda7954SMatthew G. Knepley 181049762cbcSSatish Balay Level: intermediate 181149762cbcSSatish Balay 18121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1813bb7acecfSBarry Smith `MatNullSpace` 1814147403d9SBarry Smith @*/ 1815d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1816d71ae5a4SJacob Faibussowitsch { 1817f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1818f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18197a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1820f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1822f9d4088aSMatthew G. Knepley } 1823f9d4088aSMatthew G. Knepley 18248cda7954SMatthew G. Knepley /*@C 1825bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18268cda7954SMatthew G. Knepley 182720f4b53cSBarry Smith Not Collective; No Fortran Support 18288cda7954SMatthew G. Knepley 18298cda7954SMatthew G. Knepley Input Parameters: 1830bb7acecfSBarry Smith + dm - The `DM` 18318cda7954SMatthew G. Knepley - field - The field number for the nullspace 18328cda7954SMatthew G. Knepley 18338cda7954SMatthew G. Knepley Output Parameter: 18348cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18358cda7954SMatthew G. Knepley 183620f4b53cSBarry Smith Calling sequence of `nullsp`: 1837147403d9SBarry Smith .vb 1838147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1839147403d9SBarry Smith .ve 1840bb7acecfSBarry Smith + dm - The present `DM` 1841bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1842147403d9SBarry Smith . field - The field number in dm 1843147403d9SBarry Smith - nullSpace - The nullspace for the given field 18448cda7954SMatthew G. Knepley 184549762cbcSSatish Balay Level: intermediate 184649762cbcSSatish Balay 18471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1848bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1849147403d9SBarry Smith @*/ 1850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1851d71ae5a4SJacob Faibussowitsch { 1852f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1853f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1854f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 18557a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1856f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1858f9d4088aSMatthew G. Knepley } 1859f9d4088aSMatthew G. Knepley 18604f3b5142SJed Brown /*@C 1861bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18624d343eeaSMatthew G Knepley 186320f4b53cSBarry Smith Not Collective; No Fortran Support 18644d343eeaSMatthew G Knepley 18654d343eeaSMatthew G Knepley Input Parameter: 1866bb7acecfSBarry Smith . dm - the `DM` object 18674d343eeaSMatthew G Knepley 18684d343eeaSMatthew G Knepley Output Parameters: 186920f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 187020f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 187120f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18724d343eeaSMatthew G Knepley 18734d343eeaSMatthew G Knepley Level: intermediate 18744d343eeaSMatthew G Knepley 1875bb7acecfSBarry Smith Note: 187621c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1877bb7acecfSBarry Smith `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with 1878bb7acecfSBarry Smith `PetscFree()`. 187921c9b008SJed Brown 1880bb7acecfSBarry Smith Developer Note: 1881bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1882bb7acecfSBarry Smith likely be removed. 1883bb7acecfSBarry Smith 18841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1885bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18864d343eeaSMatthew G Knepley @*/ 1887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1888d71ae5a4SJacob Faibussowitsch { 188937d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 18904d343eeaSMatthew G Knepley 18914d343eeaSMatthew G Knepley PetscFunctionBegin; 18924d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 189369ca1f37SDmitry Karpeev if (numFields) { 1894534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 189569ca1f37SDmitry Karpeev *numFields = 0; 189669ca1f37SDmitry Karpeev } 189737d0c07bSMatthew G Knepley if (fieldNames) { 189837d0c07bSMatthew G Knepley PetscValidPointer(fieldNames, 3); 18990298fd71SBarry Smith *fieldNames = NULL; 190069ca1f37SDmitry Karpeev } 190169ca1f37SDmitry Karpeev if (fields) { 190269ca1f37SDmitry Karpeev PetscValidPointer(fields, 4); 19030298fd71SBarry Smith *fields = NULL; 190469ca1f37SDmitry Karpeev } 19059566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 190637d0c07bSMatthew G Knepley if (section) { 19073a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 190837d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 190937d0c07bSMatthew G Knepley 19109566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19129566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19139566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 191437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 191537d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 191737d0c07bSMatthew G Knepley } 191837d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 191937d0c07bSMatthew G Knepley PetscInt gdof; 192037d0c07bSMatthew G Knepley 19219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 192237d0c07bSMatthew G Knepley if (gdof > 0) { 192337d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19243a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 192537d0c07bSMatthew G Knepley 19269566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19283a544194SStefano Zampini fpdof = fdof - fcdof; 19293a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19303a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19313a544194SStefano Zampini fieldNc[f] = 1; 19323a544194SStefano Zampini } 19333a544194SStefano Zampini fieldSizes[f] += fpdof; 193437d0c07bSMatthew G Knepley } 193537d0c07bSMatthew G Knepley } 193637d0c07bSMatthew G Knepley } 193737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 193937d0c07bSMatthew G Knepley fieldSizes[f] = 0; 194037d0c07bSMatthew G Knepley } 194137d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194237d0c07bSMatthew G Knepley PetscInt gdof, goff; 194337d0c07bSMatthew G Knepley 19449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 194537d0c07bSMatthew G Knepley if (gdof > 0) { 19469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 194737d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194837d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 194937d0c07bSMatthew G Knepley 19509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1952ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 195337d0c07bSMatthew G Knepley } 195437d0c07bSMatthew G Knepley } 195537d0c07bSMatthew G Knepley } 19568865f1eaSKarl Rupp if (numFields) *numFields = nF; 195737d0c07bSMatthew G Knepley if (fieldNames) { 19589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 195937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196037d0c07bSMatthew G Knepley const char *fieldName; 196137d0c07bSMatthew G Knepley 19629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19639566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 196437d0c07bSMatthew G Knepley } 196537d0c07bSMatthew G Knepley } 196637d0c07bSMatthew G Knepley if (fields) { 19679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 196837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19693a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19703a544194SStefano Zampini 19719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19723a544194SStefano Zampini in[0] = -fieldNc[f]; 19733a544194SStefano Zampini in[1] = fieldNc[f]; 19741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19753a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19769566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 197737d0c07bSMatthew G Knepley } 197837d0c07bSMatthew G Knepley } 19799566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1980dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19824d343eeaSMatthew G Knepley } 19834d343eeaSMatthew G Knepley 198416621825SDmitry Karpeev /*@C 1985bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1986bb7acecfSBarry Smith corresponding to different fields: each `IS` contains the global indices of the dofs of the 1987bb7acecfSBarry Smith corresponding field, defined by `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 1988bb7acecfSBarry Smith The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 1989e7c4fc90SDmitry Karpeev 199020f4b53cSBarry Smith Not Collective; No Fortran Support 1991e7c4fc90SDmitry Karpeev 1992e7c4fc90SDmitry Karpeev Input Parameter: 1993bb7acecfSBarry Smith . dm - the `DM` object 1994e7c4fc90SDmitry Karpeev 1995e7c4fc90SDmitry Karpeev Output Parameters: 199620f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 199720f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 199820f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 199920f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2000e7c4fc90SDmitry Karpeev 2001e7c4fc90SDmitry Karpeev Level: intermediate 2002e7c4fc90SDmitry Karpeev 2003bb7acecfSBarry Smith Note: 2004e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2005bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2006bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2007e7c4fc90SDmitry Karpeev 2008bb7acecfSBarry Smith Developer Note: 2009bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2010bb7acecfSBarry Smith 20111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2012e7c4fc90SDmitry Karpeev @*/ 2013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2014d71ae5a4SJacob Faibussowitsch { 2015e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2016e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20178865f1eaSKarl Rupp if (len) { 2018534a8f05SLisandro Dalcin PetscValidIntPointer(len, 2); 20198865f1eaSKarl Rupp *len = 0; 20208865f1eaSKarl Rupp } 20218865f1eaSKarl Rupp if (namelist) { 20228865f1eaSKarl Rupp PetscValidPointer(namelist, 3); 2023ea78f98cSLisandro Dalcin *namelist = NULL; 20248865f1eaSKarl Rupp } 20258865f1eaSKarl Rupp if (islist) { 20268865f1eaSKarl Rupp PetscValidPointer(islist, 4); 2027ea78f98cSLisandro Dalcin *islist = NULL; 20288865f1eaSKarl Rupp } 20298865f1eaSKarl Rupp if (dmlist) { 20308865f1eaSKarl Rupp PetscValidPointer(dmlist, 5); 2031ea78f98cSLisandro Dalcin *dmlist = NULL; 20328865f1eaSKarl Rupp } 2033f3f0edfdSDmitry Karpeev /* 2034f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2035f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2036f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2037f3f0edfdSDmitry Karpeev */ 20387a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 203916621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2040435a35e8SMatthew G Knepley PetscSection section; 2041435a35e8SMatthew G Knepley PetscInt numFields, f; 2042435a35e8SMatthew G Knepley 20439566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20449566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2045435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2046f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20479566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20489566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20499566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2050435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2051435a35e8SMatthew G Knepley const char *fieldName; 2052435a35e8SMatthew G Knepley 20539566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 205403dc3394SMatthew G. Knepley if (namelist) { 20559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2057435a35e8SMatthew G Knepley } 205803dc3394SMatthew G. Knepley } 2059435a35e8SMatthew G Knepley } else { 20609566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2061e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20620298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2063e7c4fc90SDmitry Karpeev } 2064dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206616621825SDmitry Karpeev } 206716621825SDmitry Karpeev 2068412a4547SAlexis Marboeuf /*@C 206920f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 207020f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2071435a35e8SMatthew G Knepley 2072435a35e8SMatthew G Knepley Not collective 2073435a35e8SMatthew G Knepley 2074435a35e8SMatthew G Knepley Input Parameters: 2075bb7acecfSBarry Smith + dm - The `DM` object 2076bb7acecfSBarry Smith . numFields - The number of fields to select 20772adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2078435a35e8SMatthew G Knepley 2079435a35e8SMatthew G Knepley Output Parameters: 2080bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2081bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2082435a35e8SMatthew G Knepley 208320f4b53cSBarry Smith Level: intermediate 208420f4b53cSBarry Smith 2085bb7acecfSBarry Smith Note: 2086bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 20875d3b26e6SMatthew G. Knepley 20881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `DM`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2089435a35e8SMatthew G Knepley @*/ 2090d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2091d71ae5a4SJacob Faibussowitsch { 2092435a35e8SMatthew G Knepley PetscFunctionBegin; 2093435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2094dadcf809SJacob Faibussowitsch PetscValidIntPointer(fields, 3); 20958865f1eaSKarl Rupp if (is) PetscValidPointer(is, 4); 20968865f1eaSKarl Rupp if (subdm) PetscValidPointer(subdm, 5); 2097dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 20983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2099435a35e8SMatthew G Knepley } 2100435a35e8SMatthew G Knepley 21012adcc780SMatthew G. Knepley /*@C 2102bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21032adcc780SMatthew G. Knepley 21042adcc780SMatthew G. Knepley Not collective 21052adcc780SMatthew G. Knepley 2106d8d19677SJose E. Roman Input Parameters: 2107bb7acecfSBarry Smith + dms - The `DM` objects 2108bb7acecfSBarry Smith - n - The number of `DM`s 21092adcc780SMatthew G. Knepley 21102adcc780SMatthew G. Knepley Output Parameters: 2111bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2112bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21132adcc780SMatthew G. Knepley 211420f4b53cSBarry Smith Level: intermediate 211520f4b53cSBarry Smith 2116bb7acecfSBarry Smith Note: 2117bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21185d3b26e6SMatthew G. Knepley 21191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 21202adcc780SMatthew G. Knepley @*/ 2121d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2122d71ae5a4SJacob Faibussowitsch { 21232adcc780SMatthew G. Knepley PetscInt i; 21242adcc780SMatthew G. Knepley 21252adcc780SMatthew G. Knepley PetscFunctionBegin; 21262adcc780SMatthew G. Knepley PetscValidPointer(dms, 1); 2127ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21282adcc780SMatthew G. Knepley if (is) PetscValidPointer(is, 3); 2129a42bd24dSMatthew G. Knepley PetscValidPointer(superdm, 4); 2130bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2131bb7acecfSBarry Smith if (n) { 2132b9d85ea2SLisandro Dalcin DM dm = dms[0]; 2133dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21342adcc780SMatthew G. Knepley } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21362adcc780SMatthew G. Knepley } 21372adcc780SMatthew G. Knepley 213816621825SDmitry Karpeev /*@C 2139bb7acecfSBarry Smith DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a problem into subproblems 2140bb7acecfSBarry Smith corresponding to restrictions to pairs of nested subdomains: each `IS` contains the global 2141bb7acecfSBarry Smith indices of the dofs of the corresponding subdomains with in the dofs of the original `DM`. 2142bb7acecfSBarry Smith The inner subdomains conceptually define a nonoverlapping covering, while outer subdomains can overlap. 2143bb7acecfSBarry Smith The optional list of `DM`s define a `DM` for each subproblem. 214416621825SDmitry Karpeev 214520f4b53cSBarry Smith Not Collective 214616621825SDmitry Karpeev 214716621825SDmitry Karpeev Input Parameter: 2148bb7acecfSBarry Smith . dm - the `DM` object 214916621825SDmitry Karpeev 215016621825SDmitry Karpeev Output Parameters: 215120f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 215220f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 21530298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 21540298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 215520f4b53cSBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined) 215616621825SDmitry Karpeev 215716621825SDmitry Karpeev Level: intermediate 215816621825SDmitry Karpeev 2159bb7acecfSBarry Smith Note: 216016621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2161bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2162bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 216316621825SDmitry Karpeev 2164bb7acecfSBarry Smith Questions: 216520f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2166bb7acecfSBarry Smith 21671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()` 216816621825SDmitry Karpeev @*/ 2169d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2170d71ae5a4SJacob Faibussowitsch { 2171be081cd6SPeter Brune DMSubDomainHookLink link; 2172be081cd6SPeter Brune PetscInt i, l; 217316621825SDmitry Karpeev 217416621825SDmitry Karpeev PetscFunctionBegin; 217516621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21769371c9d4SSatish Balay if (n) { 21779371c9d4SSatish Balay PetscValidIntPointer(n, 2); 21789371c9d4SSatish Balay *n = 0; 21799371c9d4SSatish Balay } 21809371c9d4SSatish Balay if (namelist) { 21819371c9d4SSatish Balay PetscValidPointer(namelist, 3); 21829371c9d4SSatish Balay *namelist = NULL; 21839371c9d4SSatish Balay } 21849371c9d4SSatish Balay if (innerislist) { 21859371c9d4SSatish Balay PetscValidPointer(innerislist, 4); 21869371c9d4SSatish Balay *innerislist = NULL; 21879371c9d4SSatish Balay } 21889371c9d4SSatish Balay if (outerislist) { 21899371c9d4SSatish Balay PetscValidPointer(outerislist, 5); 21909371c9d4SSatish Balay *outerislist = NULL; 21919371c9d4SSatish Balay } 21929371c9d4SSatish Balay if (dmlist) { 21939371c9d4SSatish Balay PetscValidPointer(dmlist, 6); 21949371c9d4SSatish Balay *dmlist = NULL; 21959371c9d4SSatish Balay } 2196f3f0edfdSDmitry Karpeev /* 2197f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2198f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2199f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2200f3f0edfdSDmitry Karpeev */ 22017a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 220216621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2203dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 220414a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2205f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2206be081cd6SPeter Brune for (i = 0; i < l; i++) { 2207be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22089566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2209be081cd6SPeter Brune } 2210648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2211e7c4fc90SDmitry Karpeev } 221214a18fd3SPeter Brune } 2213bb7acecfSBarry Smith if (n) *n = l; 221414a18fd3SPeter Brune } 22153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2216e30e807fSPeter Brune } 2217e30e807fSPeter Brune 2218e30e807fSPeter Brune /*@C 2219e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2220e30e807fSPeter Brune 222120f4b53cSBarry Smith Not Collective 2222e30e807fSPeter Brune 2223e30e807fSPeter Brune Input Parameters: 2224bb7acecfSBarry Smith + dm - the `DM` object 2225e30e807fSPeter Brune . n - the number of subdomain scatters 2226e30e807fSPeter Brune - subdms - the local subdomains 2227e30e807fSPeter Brune 2228e30e807fSPeter Brune Output Parameters: 22296b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2230e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2231e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2232e30e807fSPeter Brune 223320f4b53cSBarry Smith Level: developer 223420f4b53cSBarry Smith 2235bb7acecfSBarry Smith Note: 2236bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2237e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2238e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2239e30e807fSPeter Brune solution and residual data. 2240e30e807fSPeter Brune 2241bb7acecfSBarry Smith Questions: 2242bb7acecfSBarry Smith Can the subdms input be anything or are they exactly the `DM` obtained from `DMCreateDomainDecomposition()`? 2243bb7acecfSBarry Smith 22441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2245e30e807fSPeter Brune @*/ 2246d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2247d71ae5a4SJacob Faibussowitsch { 2248e30e807fSPeter Brune PetscFunctionBegin; 2249e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2250e30e807fSPeter Brune PetscValidPointer(subdms, 3); 2251dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2253e7c4fc90SDmitry Karpeev } 2254e7c4fc90SDmitry Karpeev 225547c6ae99SBarry Smith /*@ 2256bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 225747c6ae99SBarry Smith 225820f4b53cSBarry Smith Collective 225947c6ae99SBarry Smith 2260d8d19677SJose E. Roman Input Parameters: 2261bb7acecfSBarry Smith + dm - the `DM` object 2262bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 226347c6ae99SBarry Smith 226447c6ae99SBarry Smith Output Parameter: 226520f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2266ae0a1c52SMatthew G Knepley 226720f4b53cSBarry Smith Options Database Key: 2268412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2269412e9a14SMatthew G. Knepley 227047c6ae99SBarry Smith Level: developer 227147c6ae99SBarry Smith 227220f4b53cSBarry Smith Note: 227320f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 227420f4b53cSBarry Smith 22751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 227647c6ae99SBarry Smith @*/ 2277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2278d71ae5a4SJacob Faibussowitsch { 2279c833c3b5SJed Brown DMRefineHookLink link; 228047c6ae99SBarry Smith 228147c6ae99SBarry Smith PetscFunctionBegin; 2282732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2284dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 22854057135bSMatthew G Knepley if (*dmf) { 228643842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 22878865f1eaSKarl Rupp 22889566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 22898865f1eaSKarl Rupp 2290644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 22910598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2292656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 22938865f1eaSKarl Rupp 22949566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2295c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 22961baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2297c833c3b5SJed Brown } 2298c833c3b5SJed Brown } 22999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2301c833c3b5SJed Brown } 2302c833c3b5SJed Brown 2303bb9467b5SJed Brown /*@C 2304c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2305c833c3b5SJed Brown 230620f4b53cSBarry Smith Logically Collective; No Fortran Support 2307c833c3b5SJed Brown 23084165533cSJose E. Roman Input Parameters: 2309bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2310bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2311f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 231220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2313c833c3b5SJed Brown 231420f4b53cSBarry Smith Calling sequence of `refinehook`: 231520f4b53cSBarry Smith $ PetscErrorCode refinehook(DM coarse, DM fine, void *ctx); 2316bb7acecfSBarry Smith + coarse - coarse level `DM` 2317bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2318c833c3b5SJed Brown - ctx - optional user-defined function context 2319c833c3b5SJed Brown 232020f4b53cSBarry Smith Calling sequence of `interphook`: 232120f4b53cSBarry Smith $ PetscErrorCode interphook(DM coarse, Mat interp, DM fine, void *ctx) 2322bb7acecfSBarry Smith + coarse - coarse level `DM` 2323c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2324bb7acecfSBarry Smith . fine - fine level `DM` to update 2325c833c3b5SJed Brown - ctx - optional user-defined function context 2326c833c3b5SJed Brown 2327c833c3b5SJed Brown Level: advanced 2328c833c3b5SJed Brown 2329c833c3b5SJed Brown Notes: 2330bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2331bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2332bb7acecfSBarry Smith 2333bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2334c833c3b5SJed Brown 2335c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2336c833c3b5SJed Brown 23371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2338c833c3b5SJed Brown @*/ 2339d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2340d71ae5a4SJacob Faibussowitsch { 2341c833c3b5SJed Brown DMRefineHookLink link, *p; 2342c833c3b5SJed Brown 2343c833c3b5SJed Brown PetscFunctionBegin; 2344c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23453d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23463ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23473d8e3701SJed Brown } 23489566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2349c833c3b5SJed Brown link->refinehook = refinehook; 2350c833c3b5SJed Brown link->interphook = interphook; 2351c833c3b5SJed Brown link->ctx = ctx; 23520298fd71SBarry Smith link->next = NULL; 2353c833c3b5SJed Brown *p = link; 23543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2355c833c3b5SJed Brown } 2356c833c3b5SJed Brown 23573d8e3701SJed Brown /*@C 2358bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2359bb7acecfSBarry Smith a nonlinear problem to a finer grid 23603d8e3701SJed Brown 236120f4b53cSBarry Smith Logically Collective; No Fortran Support 23623d8e3701SJed Brown 23634165533cSJose E. Roman Input Parameters: 2364bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2365bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2366bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 236720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23683d8e3701SJed Brown 23693d8e3701SJed Brown Level: advanced 23703d8e3701SJed Brown 2371bb7acecfSBarry Smith Note: 23723d8e3701SJed Brown This function does nothing if the hook is not in the list. 23733d8e3701SJed Brown 23741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23753d8e3701SJed Brown @*/ 2376d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2377d71ae5a4SJacob Faibussowitsch { 23783d8e3701SJed Brown DMRefineHookLink link, *p; 23793d8e3701SJed Brown 23803d8e3701SJed Brown PetscFunctionBegin; 23813d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23823d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 23833d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 23843d8e3701SJed Brown link = *p; 23853d8e3701SJed Brown *p = link->next; 23869566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 23873d8e3701SJed Brown break; 23883d8e3701SJed Brown } 23893d8e3701SJed Brown } 23903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23913d8e3701SJed Brown } 23923d8e3701SJed Brown 2393c833c3b5SJed Brown /*@ 2394bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2395c833c3b5SJed Brown 2396c833c3b5SJed Brown Collective if any hooks are 2397c833c3b5SJed Brown 23984165533cSJose E. Roman Input Parameters: 2399bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2400bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2401bb7acecfSBarry Smith - fine - finer `DM` to update 2402c833c3b5SJed Brown 2403c833c3b5SJed Brown Level: developer 2404c833c3b5SJed Brown 2405bb7acecfSBarry Smith Developer Note: 2406bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2407bb7acecfSBarry Smith an API with consistent terminology. 2408bb7acecfSBarry Smith 24091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2410c833c3b5SJed Brown @*/ 2411d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2412d71ae5a4SJacob Faibussowitsch { 2413c833c3b5SJed Brown DMRefineHookLink link; 2414c833c3b5SJed Brown 2415c833c3b5SJed Brown PetscFunctionBegin; 2416c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24171baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24184057135bSMatthew G Knepley } 24193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 242047c6ae99SBarry Smith } 242147c6ae99SBarry Smith 2422eb3f98d2SBarry Smith /*@ 24231f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24241f3379b2SToby Isaac 242520f4b53cSBarry Smith Collective 24261f3379b2SToby Isaac 24274165533cSJose E. Roman Input Parameters: 2428bb7acecfSBarry Smith + coarse - coarse `DM` 2429bb7acecfSBarry Smith . fine - fine `DM` 2430bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2431bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2432bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24331f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24341f3379b2SToby Isaac 24354165533cSJose E. Roman Output Parameter: 24361f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24371f3379b2SToby Isaac 24381f3379b2SToby Isaac Level: developer 24391f3379b2SToby Isaac 2440bb7acecfSBarry Smith Note: 2441bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24421f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24431f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24441f3379b2SToby Isaac slope-limiting reconstruction. 24451f3379b2SToby Isaac 2446bb7acecfSBarry Smith Developer Note: 2447bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2448bb7acecfSBarry Smith 24491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24501f3379b2SToby Isaac @*/ 2451d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2452d71ae5a4SJacob Faibussowitsch { 24531f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24541f3379b2SToby Isaac 24551f3379b2SToby Isaac PetscFunctionBegin; 24561f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24571f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24581f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24591f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24601f3379b2SToby Isaac 24619566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24621f3379b2SToby Isaac if (interpsol) { 24639566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24641f3379b2SToby Isaac } else if (interp) { 24659566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 246698921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24681f3379b2SToby Isaac } 24691f3379b2SToby Isaac 24701f3379b2SToby Isaac /*@ 2471bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2472eb3f98d2SBarry Smith 2473eb3f98d2SBarry Smith Not Collective 2474eb3f98d2SBarry Smith 2475eb3f98d2SBarry Smith Input Parameter: 2476bb7acecfSBarry Smith . dm - the `DM` object 2477eb3f98d2SBarry Smith 2478eb3f98d2SBarry Smith Output Parameter: 2479eb3f98d2SBarry Smith . level - number of refinements 2480eb3f98d2SBarry Smith 2481eb3f98d2SBarry Smith Level: developer 2482eb3f98d2SBarry Smith 2483bb7acecfSBarry Smith Note: 2484bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2485bb7acecfSBarry Smith 24861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2487eb3f98d2SBarry Smith @*/ 2488d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2489d71ae5a4SJacob Faibussowitsch { 2490eb3f98d2SBarry Smith PetscFunctionBegin; 2491eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2492eb3f98d2SBarry Smith *level = dm->levelup; 24933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2494eb3f98d2SBarry Smith } 2495eb3f98d2SBarry Smith 2496fef3a512SBarry Smith /*@ 2497bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2498fef3a512SBarry Smith 2499fef3a512SBarry Smith Not Collective 2500fef3a512SBarry Smith 2501d8d19677SJose E. Roman Input Parameters: 2502bb7acecfSBarry Smith + dm - the `DM` object 2503fef3a512SBarry Smith - level - number of refinements 2504fef3a512SBarry Smith 2505fef3a512SBarry Smith Level: advanced 2506fef3a512SBarry Smith 250795452b02SPatrick Sanan Notes: 2508bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2509fef3a512SBarry Smith 2510bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2511bb7acecfSBarry Smith 25121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2513fef3a512SBarry Smith @*/ 2514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2515d71ae5a4SJacob Faibussowitsch { 2516fef3a512SBarry Smith PetscFunctionBegin; 2517fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2518fef3a512SBarry Smith dm->levelup = level; 25193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2520fef3a512SBarry Smith } 2521fef3a512SBarry Smith 2522d410b0cfSMatthew G. Knepley /*@ 2523bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2524d410b0cfSMatthew G. Knepley 252520f4b53cSBarry Smith Collective 2526d410b0cfSMatthew G. Knepley 2527f1a722f8SMatthew G. Knepley Input Parameters: 2528bb7acecfSBarry Smith + dm - the `DM` object 2529d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2530d410b0cfSMatthew G. Knepley 2531d410b0cfSMatthew G. Knepley Output Parameter: 253220f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2533d410b0cfSMatthew G. Knepley 2534d410b0cfSMatthew G. Knepley Level: developer 2535d410b0cfSMatthew G. Knepley 253620f4b53cSBarry Smith Note: 253720f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 253820f4b53cSBarry Smith 25391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2540d410b0cfSMatthew G. Knepley @*/ 2541d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2542d71ae5a4SJacob Faibussowitsch { 2543d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2544d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2545dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2546d410b0cfSMatthew G. Knepley if (*dme) { 2547d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25489566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2549d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25509566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2551d410b0cfSMatthew G. Knepley } 25523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2553d410b0cfSMatthew G. Knepley } 2554d410b0cfSMatthew G. Knepley 2555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2556d71ae5a4SJacob Faibussowitsch { 2557ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2558ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2559ca3d3a14SMatthew G. Knepley PetscValidPointer(tdm, 2); 2560ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2562ca3d3a14SMatthew G. Knepley } 2563ca3d3a14SMatthew G. Knepley 2564d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2565d71ae5a4SJacob Faibussowitsch { 2566ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2567ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2568ca3d3a14SMatthew G. Knepley PetscValidPointer(tv, 2); 2569ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2571ca3d3a14SMatthew G. Knepley } 2572ca3d3a14SMatthew G. Knepley 2573ca3d3a14SMatthew G. Knepley /*@ 2574bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2575ca3d3a14SMatthew G. Knepley 2576ca3d3a14SMatthew G. Knepley Input Parameter: 257720f4b53cSBarry Smith . dm - The `DM` 2578ca3d3a14SMatthew G. Knepley 2579ca3d3a14SMatthew G. Knepley Output Parameter: 258020f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2581ca3d3a14SMatthew G. Knepley 2582ca3d3a14SMatthew G. Knepley Level: developer 2583ca3d3a14SMatthew G. Knepley 25841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2585ca3d3a14SMatthew G. Knepley @*/ 2586d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2587d71ae5a4SJacob Faibussowitsch { 2588ca3d3a14SMatthew G. Knepley Vec tv; 2589ca3d3a14SMatthew G. Knepley 2590ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2591ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2592534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 25939566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2594ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 25953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2596ca3d3a14SMatthew G. Knepley } 2597ca3d3a14SMatthew G. Knepley 2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2599d71ae5a4SJacob Faibussowitsch { 2600ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2601ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2602ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2603ca3d3a14SMatthew G. Knepley 2604ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26059566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26069566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26079566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26089566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26099566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26109566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26119566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26129566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2613ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2615ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2616ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2617ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2619ca3d3a14SMatthew G. Knepley if (!dof) continue; 26209566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26219566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2622ca3d3a14SMatthew G. Knepley } 2623ca3d3a14SMatthew G. Knepley } 26249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26259566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26269566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2627ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2628ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2630ca3d3a14SMatthew G. Knepley if (dof) { 2631ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2632ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2633ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2634ca3d3a14SMatthew G. Knepley 2635ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26369566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26379566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26389566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2639ca3d3a14SMatthew G. Knepley } 2640ca3d3a14SMatthew G. Knepley } 2641ca3d3a14SMatthew G. Knepley } 26429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2644ca3d3a14SMatthew G. Knepley } 2645ca3d3a14SMatthew G. Knepley 2646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2647d71ae5a4SJacob Faibussowitsch { 2648ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2649ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2650ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2651ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2652ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2653ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2654ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26559566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2657ca3d3a14SMatthew G. Knepley } 2658ca3d3a14SMatthew G. Knepley 2659bb9467b5SJed Brown /*@C 2660bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2661baf369e7SPeter Brune 266220f4b53cSBarry Smith Logically Collective 2663baf369e7SPeter Brune 26644165533cSJose E. Roman Input Parameters: 2665bb7acecfSBarry Smith + dm - the `DM` 2666bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2667bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 266820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2669baf369e7SPeter Brune 267020f4b53cSBarry Smith Calling sequence of `beginhook`: 267120f4b53cSBarry Smith $ PetscErrorCode beginhook(DM fine, VecScatter out, VecScatter in, DM coarse, void *ctx) 2672baf369e7SPeter Brune + dm - global DM 2673baf369e7SPeter Brune . g - global vector 2674baf369e7SPeter Brune . mode - mode 2675baf369e7SPeter Brune . l - local vector 2676baf369e7SPeter Brune - ctx - optional user-defined function context 2677baf369e7SPeter Brune 267820f4b53cSBarry Smith Calling sequence of `endhook`: 267920f4b53cSBarry Smith $ PetscErrorCode endhook(DM fine, VecScatter out, VecScatter in, DM coarse, void *ctx) 2680baf369e7SPeter Brune + global - global DM 2681baf369e7SPeter Brune - ctx - optional user-defined function context 2682baf369e7SPeter Brune 2683baf369e7SPeter Brune Level: advanced 2684baf369e7SPeter Brune 2685bb7acecfSBarry Smith Note: 2686bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2687bb7acecfSBarry Smith 26881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2689baf369e7SPeter Brune @*/ 2690d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2691d71ae5a4SJacob Faibussowitsch { 2692baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2693baf369e7SPeter Brune 2694baf369e7SPeter Brune PetscFunctionBegin; 2695baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2696baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 26979566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2698baf369e7SPeter Brune link->beginhook = beginhook; 2699baf369e7SPeter Brune link->endhook = endhook; 2700baf369e7SPeter Brune link->ctx = ctx; 27010298fd71SBarry Smith link->next = NULL; 2702baf369e7SPeter Brune *p = link; 27033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2704baf369e7SPeter Brune } 2705baf369e7SPeter Brune 2706d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2707d71ae5a4SJacob Faibussowitsch { 27084c274da1SToby Isaac Mat cMat; 270979769bd5SJed Brown Vec cVec, cBias; 27104c274da1SToby Isaac PetscSection section, cSec; 27114c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27124c274da1SToby Isaac 27134c274da1SToby Isaac PetscFunctionBegin; 27144c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27159566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27164c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27175db9a05bSToby Isaac PetscInt nRows; 27185db9a05bSToby Isaac 27199566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27203ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27219566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27229566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27239566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27249566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27264c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27284c274da1SToby Isaac if (dof) { 27294c274da1SToby Isaac PetscScalar *vals; 27309566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27319566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27324c274da1SToby Isaac } 27334c274da1SToby Isaac } 27349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27354c274da1SToby Isaac } 27363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27374c274da1SToby Isaac } 27384c274da1SToby Isaac 273947c6ae99SBarry Smith /*@ 274001729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 274101729b5cSPatrick Sanan 274220f4b53cSBarry Smith Neighbor-wise Collective 274301729b5cSPatrick Sanan 274401729b5cSPatrick Sanan Input Parameters: 2745bb7acecfSBarry Smith + dm - the `DM` object 274601729b5cSPatrick Sanan . g - the global vector 2747bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 274801729b5cSPatrick Sanan - l - the local vector 274901729b5cSPatrick Sanan 275020f4b53cSBarry Smith Level: beginner 275120f4b53cSBarry Smith 275201729b5cSPatrick Sanan Notes: 2753bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2754bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2755bb7acecfSBarry Smith 2756bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 275701729b5cSPatrick Sanan 27581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 2759bb7acecfSBarry Smith `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, 2760bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 276101729b5cSPatrick Sanan @*/ 2762d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2763d71ae5a4SJacob Faibussowitsch { 276401729b5cSPatrick Sanan PetscFunctionBegin; 27659566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27669566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 276801729b5cSPatrick Sanan } 276901729b5cSPatrick Sanan 277001729b5cSPatrick Sanan /*@ 277147c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 277247c6ae99SBarry Smith 277320f4b53cSBarry Smith Neighbor-wise Collective 277447c6ae99SBarry Smith 277547c6ae99SBarry Smith Input Parameters: 2776bb7acecfSBarry Smith + dm - the `DM` object 277747c6ae99SBarry Smith . g - the global vector 2778bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 277947c6ae99SBarry Smith - l - the local vector 278047c6ae99SBarry Smith 278101729b5cSPatrick Sanan Level: intermediate 278247c6ae99SBarry Smith 2783bb7acecfSBarry Smith Notes: 2784bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2785bb7acecfSBarry Smith 2786bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2787bb7acecfSBarry Smith 2788bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2789bb7acecfSBarry Smith 2790bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2791bb7acecfSBarry Smith 27921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 279347c6ae99SBarry Smith @*/ 2794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2795d71ae5a4SJacob Faibussowitsch { 27967128ae9fSMatthew G Knepley PetscSF sf; 2797baf369e7SPeter Brune DMGlobalToLocalHookLink link; 279847c6ae99SBarry Smith 279947c6ae99SBarry Smith PetscFunctionBegin; 2800171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2801baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28021baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2803baf369e7SPeter Brune } 28049566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28057128ae9fSMatthew G Knepley if (sf) { 2806ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2807ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2808d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28097128ae9fSMatthew G Knepley 28107a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28129566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28139566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28167128ae9fSMatthew G Knepley } else { 28179566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalbegin)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28187128ae9fSMatthew G Knepley } 28193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282047c6ae99SBarry Smith } 282147c6ae99SBarry Smith 282247c6ae99SBarry Smith /*@ 282347c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 282447c6ae99SBarry Smith 282520f4b53cSBarry Smith Neighbor-wise Collective 282647c6ae99SBarry Smith 282747c6ae99SBarry Smith Input Parameters: 2828bb7acecfSBarry Smith + dm - the `DM` object 282947c6ae99SBarry Smith . g - the global vector 2830bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 283147c6ae99SBarry Smith - l - the local vector 283247c6ae99SBarry Smith 283301729b5cSPatrick Sanan Level: intermediate 283447c6ae99SBarry Smith 2835bb7acecfSBarry Smith Note: 2836bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2837bb7acecfSBarry Smith 28381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 283947c6ae99SBarry Smith @*/ 2840d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2841d71ae5a4SJacob Faibussowitsch { 28427128ae9fSMatthew G Knepley PetscSF sf; 2843ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2844ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2845ca3d3a14SMatthew G. Knepley PetscBool transform; 2846baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2847d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 284847c6ae99SBarry Smith 284947c6ae99SBarry Smith PetscFunctionBegin; 2850171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28519566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28529566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28537128ae9fSMatthew G Knepley if (sf) { 28547a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28557128ae9fSMatthew G Knepley 28569566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28579566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28619566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28627128ae9fSMatthew G Knepley } else { 28639566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalend)(dm, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l)); 28647128ae9fSMatthew G Knepley } 28659566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2866baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28679566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2868baf369e7SPeter Brune } 28693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 287047c6ae99SBarry Smith } 287147c6ae99SBarry Smith 2872d4d07f1eSToby Isaac /*@C 2873d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2874d4d07f1eSToby Isaac 287520f4b53cSBarry Smith Logically Collective 2876d4d07f1eSToby Isaac 28774165533cSJose E. Roman Input Parameters: 2878bb7acecfSBarry Smith + dm - the `DM` 2879bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2880bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 288120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2882d4d07f1eSToby Isaac 288320f4b53cSBarry Smith Calling sequence of `beginhook`: 288420f4b53cSBarry Smith $ PetscErrorCode beginhook(DM fine, Vec l, InsertMode mode, Vec g, void *ctx) 2885bb7acecfSBarry Smith + dm - global `DM` 2886d4d07f1eSToby Isaac . l - local vector 2887d4d07f1eSToby Isaac . mode - mode 2888d4d07f1eSToby Isaac . g - global vector 2889d4d07f1eSToby Isaac - ctx - optional user-defined function context 2890d4d07f1eSToby Isaac 289120f4b53cSBarry Smith Calling sequence of `endhook`: 289220f4b53cSBarry Smith $ PetscErrorCode endhook(DM fine, Vec l, InsertMode mode, Vec g, void *ctx) 2893bb7acecfSBarry Smith + global - global `DM` 2894d4d07f1eSToby Isaac . l - local vector 2895d4d07f1eSToby Isaac . mode - mode 2896d4d07f1eSToby Isaac . g - global vector 2897d4d07f1eSToby Isaac - ctx - optional user-defined function context 2898d4d07f1eSToby Isaac 2899d4d07f1eSToby Isaac Level: advanced 2900d4d07f1eSToby Isaac 29011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2902d4d07f1eSToby Isaac @*/ 2903d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM, Vec, InsertMode, Vec, void *), PetscErrorCode (*endhook)(DM, Vec, InsertMode, Vec, void *), void *ctx) 2904d71ae5a4SJacob Faibussowitsch { 2905d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2906d4d07f1eSToby Isaac 2907d4d07f1eSToby Isaac PetscFunctionBegin; 2908d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2909d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29109566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2911d4d07f1eSToby Isaac link->beginhook = beginhook; 2912d4d07f1eSToby Isaac link->endhook = endhook; 2913d4d07f1eSToby Isaac link->ctx = ctx; 2914d4d07f1eSToby Isaac link->next = NULL; 2915d4d07f1eSToby Isaac *p = link; 29163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2917d4d07f1eSToby Isaac } 2918d4d07f1eSToby Isaac 2919d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2920d71ae5a4SJacob Faibussowitsch { 29214c274da1SToby Isaac Mat cMat; 29224c274da1SToby Isaac Vec cVec; 29234c274da1SToby Isaac PetscSection section, cSec; 29244c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 29254c274da1SToby Isaac 29264c274da1SToby Isaac PetscFunctionBegin; 29274c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29289566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29294c274da1SToby Isaac if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) { 29305db9a05bSToby Isaac PetscInt nRows; 29315db9a05bSToby Isaac 29329566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29333ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29349566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29359566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29369566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29374c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29394c274da1SToby Isaac if (dof) { 29404c274da1SToby Isaac PetscInt d; 29414c274da1SToby Isaac PetscScalar *vals; 29429566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29439566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29444c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29454c274da1SToby Isaac * we just extracted */ 2946ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29474c274da1SToby Isaac } 29484c274da1SToby Isaac } 29499566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29514c274da1SToby Isaac } 29523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29534c274da1SToby Isaac } 295401729b5cSPatrick Sanan /*@ 295501729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 295601729b5cSPatrick Sanan 295720f4b53cSBarry Smith Neighbor-wise Collective 295801729b5cSPatrick Sanan 295901729b5cSPatrick Sanan Input Parameters: 2960bb7acecfSBarry Smith + dm - the `DM` object 296101729b5cSPatrick Sanan . l - the local vector 2962bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 296301729b5cSPatrick Sanan - g - the global vector 296401729b5cSPatrick Sanan 296520f4b53cSBarry Smith Level: beginner 296620f4b53cSBarry Smith 296701729b5cSPatrick Sanan Notes: 296801729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2969bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 297001729b5cSPatrick Sanan 2971bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2972bb7acecfSBarry Smith 2973bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 2974bb7acecfSBarry Smith 2975bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 297601729b5cSPatrick Sanan 29771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 297801729b5cSPatrick Sanan @*/ 2979d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 2980d71ae5a4SJacob Faibussowitsch { 298101729b5cSPatrick Sanan PetscFunctionBegin; 29829566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 29839566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 29843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 298501729b5cSPatrick Sanan } 29864c274da1SToby Isaac 298747c6ae99SBarry Smith /*@ 298801729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 29899a42bb27SBarry Smith 299020f4b53cSBarry Smith Neighbor-wise Collective 29919a42bb27SBarry Smith 29929a42bb27SBarry Smith Input Parameters: 2993bb7acecfSBarry Smith + dm - the `DM` object 2994f6813fd5SJed Brown . l - the local vector 2995aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 29961eb28f2eSBarry Smith - g - the global vector 29979a42bb27SBarry Smith 299820f4b53cSBarry Smith Level: intermediate 299920f4b53cSBarry Smith 300095452b02SPatrick Sanan Notes: 3001bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3002bb7acecfSBarry Smith 3003bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3004bb7acecfSBarry Smith 3005bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3006bb7acecfSBarry Smith 3007bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3008bb7acecfSBarry Smith 3009bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30109a42bb27SBarry Smith 30111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30129a42bb27SBarry Smith @*/ 3013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3014d71ae5a4SJacob Faibussowitsch { 30157128ae9fSMatthew G Knepley PetscSF sf; 301684330215SMatthew G. Knepley PetscSection s, gs; 3017d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3018ca3d3a14SMatthew G. Knepley Vec tmpl; 3019ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3020ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3021fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3022d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30239a42bb27SBarry Smith 30249a42bb27SBarry Smith PetscFunctionBegin; 3025171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3026d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30271baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3028d4d07f1eSToby Isaac } 30299566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30309566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30327128ae9fSMatthew G Knepley switch (mode) { 30337128ae9fSMatthew G Knepley case INSERT_VALUES: 30347128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3035d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3036d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3037d71ae5a4SJacob Faibussowitsch break; 30387128ae9fSMatthew G Knepley case ADD_VALUES: 30397128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3040d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3041d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3042d71ae5a4SJacob Faibussowitsch break; 3043d71ae5a4SJacob Faibussowitsch default: 3044d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30457128ae9fSMatthew G Knepley } 3046ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30479566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3048ca3d3a14SMatthew G. Knepley if (transform) { 30499566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30509566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30519566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30529566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3053fa88e482SJed Brown } else if (isInsert) { 30549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3055fa88e482SJed Brown } else { 30569566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3057fa88e482SJed Brown l_inplace = PETSC_TRUE; 3058ca3d3a14SMatthew G. Knepley } 3059fa88e482SJed Brown if (s && isInsert) { 30609566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3061fa88e482SJed Brown } else { 30629566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3063fa88e482SJed Brown g_inplace = PETSC_TRUE; 3064fa88e482SJed Brown } 3065ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30669566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 306784330215SMatthew G. Knepley } else if (s && isInsert) { 306884330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 306984330215SMatthew G. Knepley 30709566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 30729566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 307384330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3074b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 307584330215SMatthew G. Knepley 30769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 30779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 30789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 30799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 30809566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 30819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3082b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 308303442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 30847a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3085b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3086b3b16f48SMatthew G. Knepley if (!gcdof) { 308784330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3088b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3089b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 309084330215SMatthew G. Knepley const PetscInt *cdofs; 309184330215SMatthew G. Knepley PetscInt cind = 0; 309284330215SMatthew G. Knepley 30939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3094b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 30959371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 30969371c9d4SSatish Balay ++cind; 30979371c9d4SSatish Balay continue; 30989371c9d4SSatish Balay } 3099b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 310084330215SMatthew G. Knepley } 31017a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 310284330215SMatthew G. Knepley } 3103ca3d3a14SMatthew G. Knepley } 3104fa88e482SJed Brown if (g_inplace) { 31059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3106fa88e482SJed Brown } else { 31079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3108fa88e482SJed Brown } 3109ca3d3a14SMatthew G. Knepley if (transform) { 31109566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31119566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3112fa88e482SJed Brown } else if (l_inplace) { 31139566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3114ca3d3a14SMatthew G. Knepley } else { 31159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3116ca3d3a14SMatthew G. Knepley } 31177128ae9fSMatthew G Knepley } else { 31189566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalbegin)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 31197128ae9fSMatthew G Knepley } 31203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31219a42bb27SBarry Smith } 31229a42bb27SBarry Smith 31239a42bb27SBarry Smith /*@ 31249a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 312547c6ae99SBarry Smith 312620f4b53cSBarry Smith Neighbor-wise Collective 312747c6ae99SBarry Smith 312847c6ae99SBarry Smith Input Parameters: 3129bb7acecfSBarry Smith + dm - the `DM` object 3130f6813fd5SJed Brown . l - the local vector 3131bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3132f6813fd5SJed Brown - g - the global vector 313347c6ae99SBarry Smith 313401729b5cSPatrick Sanan Level: intermediate 313547c6ae99SBarry Smith 3136bb7acecfSBarry Smith Note: 3137bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3138bb7acecfSBarry Smith 31391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()` 314047c6ae99SBarry Smith @*/ 3141d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3142d71ae5a4SJacob Faibussowitsch { 31437128ae9fSMatthew G Knepley PetscSF sf; 314484330215SMatthew G. Knepley PetscSection s; 3145d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3146ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 314747c6ae99SBarry Smith 314847c6ae99SBarry Smith PetscFunctionBegin; 3149171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31509566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31519566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31527128ae9fSMatthew G Knepley switch (mode) { 31537128ae9fSMatthew G Knepley case INSERT_VALUES: 3154d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3155d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3156d71ae5a4SJacob Faibussowitsch break; 31577128ae9fSMatthew G Knepley case ADD_VALUES: 3158d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3159d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3160d71ae5a4SJacob Faibussowitsch break; 3161d71ae5a4SJacob Faibussowitsch default: 3162d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31637128ae9fSMatthew G Knepley } 316484330215SMatthew G. Knepley if (sf && !isInsert) { 3165ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3166ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3167ca3d3a14SMatthew G. Knepley Vec tmpl; 316884330215SMatthew G. Knepley 31699566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3170ca3d3a14SMatthew G. Knepley if (transform) { 31719566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3173ca3d3a14SMatthew G. Knepley } else { 31749566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3175ca3d3a14SMatthew G. Knepley } 31769566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 31779566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3178ca3d3a14SMatthew G. Knepley if (transform) { 31799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31809566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3181ca3d3a14SMatthew G. Knepley } else { 31829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3183ca3d3a14SMatthew G. Knepley } 31849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 318584330215SMatthew G. Knepley } else if (s && isInsert) { 31867128ae9fSMatthew G Knepley } else { 31879566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalend)(dm, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g)); 31887128ae9fSMatthew G Knepley } 3189d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 31909566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3191d4d07f1eSToby Isaac } 31923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 319347c6ae99SBarry Smith } 319447c6ae99SBarry Smith 3195f089877aSRichard Tran Mills /*@ 3196bb7acecfSBarry Smith DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include ghost points 3197bc0a1609SRichard Tran Mills that contain irrelevant values) to another local vector where the ghost 3198bb7acecfSBarry Smith points in the second are set correctly from values on other MPI ranks. Must be followed by `DMLocalToLocalEnd()`. 3199f089877aSRichard Tran Mills 320020f4b53cSBarry Smith Neighbor-wise Collective 3201f089877aSRichard Tran Mills 3202f089877aSRichard Tran Mills Input Parameters: 3203bb7acecfSBarry Smith + dm - the `DM` object 3204bc0a1609SRichard Tran Mills . g - the original local vector 3205bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3206f089877aSRichard Tran Mills 3207bc0a1609SRichard Tran Mills Output Parameter: 3208bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3209f089877aSRichard Tran Mills 3210f089877aSRichard Tran Mills Level: intermediate 3211f089877aSRichard Tran Mills 32121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3213f089877aSRichard Tran Mills @*/ 3214d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3215d71ae5a4SJacob Faibussowitsch { 3216f089877aSRichard Tran Mills PetscFunctionBegin; 3217f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32189f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32199f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32209f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3222f089877aSRichard Tran Mills } 3223f089877aSRichard Tran Mills 3224f089877aSRichard Tran Mills /*@ 3225bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3226bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3227f089877aSRichard Tran Mills 322820f4b53cSBarry Smith Neighbor-wise Collective 3229f089877aSRichard Tran Mills 3230f089877aSRichard Tran Mills Input Parameters: 3231bb7acecfSBarry Smith + da - the `DM` object 3232bc0a1609SRichard Tran Mills . g - the original local vector 3233bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3234f089877aSRichard Tran Mills 3235bc0a1609SRichard Tran Mills Output Parameter: 3236bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3237f089877aSRichard Tran Mills 3238f089877aSRichard Tran Mills Level: intermediate 3239f089877aSRichard Tran Mills 32401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3241f089877aSRichard Tran Mills @*/ 3242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3243d71ae5a4SJacob Faibussowitsch { 3244f089877aSRichard Tran Mills PetscFunctionBegin; 3245f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32469f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32479f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32489f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250f089877aSRichard Tran Mills } 3251f089877aSRichard Tran Mills 325247c6ae99SBarry Smith /*@ 3253bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 325447c6ae99SBarry Smith 325520f4b53cSBarry Smith Collective 325647c6ae99SBarry Smith 3257d8d19677SJose E. Roman Input Parameters: 3258bb7acecfSBarry Smith + dm - the `DM` object 325920f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 326047c6ae99SBarry Smith 326147c6ae99SBarry Smith Output Parameter: 3262bb7acecfSBarry Smith . dmc - the coarsened `DM` 326347c6ae99SBarry Smith 326447c6ae99SBarry Smith Level: developer 326547c6ae99SBarry Smith 32661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 326747c6ae99SBarry Smith @*/ 3268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3269d71ae5a4SJacob Faibussowitsch { 3270b17ce1afSJed Brown DMCoarsenHookLink link; 327147c6ae99SBarry Smith 327247c6ae99SBarry Smith PetscFunctionBegin; 3273171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32749566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3275dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3276b9d85ea2SLisandro Dalcin if (*dmc) { 3277a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 32789566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 327943842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 32809566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3281644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 32820598a293SJed Brown (*dmc)->levelup = dm->levelup; 3283656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 32849566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3285b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 32869566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3287b17ce1afSJed Brown } 3288b9d85ea2SLisandro Dalcin } 32899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 32907a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 32913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3292b17ce1afSJed Brown } 3293b17ce1afSJed Brown 3294bb9467b5SJed Brown /*@C 3295b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3296b17ce1afSJed Brown 329720f4b53cSBarry Smith Logically Collective; No Fortran Support 3298b17ce1afSJed Brown 32994165533cSJose E. Roman Input Parameters: 3300bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3301b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3302bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 330320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3304b17ce1afSJed Brown 330520f4b53cSBarry Smith Calling sequence of `coarsenhook`: 330620f4b53cSBarry Smith $ PetscErrorCode coarsenhook(DM fine, DM coarse, void *ctx); 3307bb7acecfSBarry Smith + fine - fine level `DM` 3308bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3309b17ce1afSJed Brown - ctx - optional user-defined function context 3310b17ce1afSJed Brown 331120f4b53cSBarry Smith Calling sequence of `restricthook`: 331220f4b53cSBarry Smith $ PetscErrorCode restricthook(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx) 3313bb7acecfSBarry Smith + fine - fine level `DM` 3314bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3315c833c3b5SJed Brown . rscale - scaling vector for restriction 3316c833c3b5SJed Brown . inject - matrix restricting by injection 3317b17ce1afSJed Brown . coarse - coarse level DM to update 3318b17ce1afSJed Brown - ctx - optional user-defined function context 3319b17ce1afSJed Brown 3320b17ce1afSJed Brown Level: advanced 3321b17ce1afSJed Brown 3322b17ce1afSJed Brown Notes: 3323bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3324b17ce1afSJed Brown 3325b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3326b17ce1afSJed Brown 3327b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3328bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3329b17ce1afSJed Brown 3330bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3331bb7acecfSBarry Smith 33321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3333b17ce1afSJed Brown @*/ 3334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3335d71ae5a4SJacob Faibussowitsch { 3336b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3337b17ce1afSJed Brown 3338b17ce1afSJed Brown PetscFunctionBegin; 3339b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33401e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33413ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33421e3d8eccSJed Brown } 33439566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3344b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3345b17ce1afSJed Brown link->restricthook = restricthook; 3346b17ce1afSJed Brown link->ctx = ctx; 33470298fd71SBarry Smith link->next = NULL; 3348b17ce1afSJed Brown *p = link; 33493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3350b17ce1afSJed Brown } 3351b17ce1afSJed Brown 3352dc822a44SJed Brown /*@C 3353bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3354dc822a44SJed Brown 335520f4b53cSBarry Smith Logically Collective; No Fortran Support 3356dc822a44SJed Brown 33574165533cSJose E. Roman Input Parameters: 3358bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3359dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3360bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 336120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3362dc822a44SJed Brown 3363dc822a44SJed Brown Level: advanced 3364dc822a44SJed Brown 3365bb7acecfSBarry Smith Note: 3366dc822a44SJed Brown This function does nothing if the hook is not in the list. 3367dc822a44SJed Brown 33681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3369dc822a44SJed Brown @*/ 3370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3371d71ae5a4SJacob Faibussowitsch { 3372dc822a44SJed Brown DMCoarsenHookLink link, *p; 3373dc822a44SJed Brown 3374dc822a44SJed Brown PetscFunctionBegin; 3375dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3376dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3377dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3378dc822a44SJed Brown link = *p; 3379dc822a44SJed Brown *p = link->next; 33809566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3381dc822a44SJed Brown break; 3382dc822a44SJed Brown } 3383dc822a44SJed Brown } 33843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3385dc822a44SJed Brown } 3386dc822a44SJed Brown 3387b17ce1afSJed Brown /*@ 3388bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3389b17ce1afSJed Brown 3390b17ce1afSJed Brown Collective if any hooks are 3391b17ce1afSJed Brown 33924165533cSJose E. Roman Input Parameters: 3393bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3394bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3395e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3396bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 339720f4b53cSBarry Smith - coarse - coarser `DM` to update 3398b17ce1afSJed Brown 3399b17ce1afSJed Brown Level: developer 3400b17ce1afSJed Brown 3401bb7acecfSBarry Smith Developer Note: 3402bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3403bb7acecfSBarry Smith 34041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3405b17ce1afSJed Brown @*/ 3406d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3407d71ae5a4SJacob Faibussowitsch { 3408b17ce1afSJed Brown DMCoarsenHookLink link; 3409b17ce1afSJed Brown 3410b17ce1afSJed Brown PetscFunctionBegin; 3411b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34121baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3413b17ce1afSJed Brown } 34143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 341547c6ae99SBarry Smith } 341647c6ae99SBarry Smith 3417bb9467b5SJed Brown /*@C 3418be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 34195dbd56e3SPeter Brune 342020f4b53cSBarry Smith Logically Collective; No Fortran Support 34215dbd56e3SPeter Brune 34224165533cSJose E. Roman Input Parameters: 3423bb7acecfSBarry Smith + global - global `DM` 3424bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34255dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 342620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34275dbd56e3SPeter Brune 342820f4b53cSBarry Smith Calling sequence of `ddhook`: 342920f4b53cSBarry Smith $ PetscErrorCode ddhook(DM global, DM block, void *ctx) 3430bb7acecfSBarry Smith + global - global `DM` 3431bb7acecfSBarry Smith . block - block `DM` 3432ec4806b8SPeter Brune - ctx - optional user-defined function context 3433ec4806b8SPeter Brune 343420f4b53cSBarry Smith Calling sequence of `restricthook`: 343520f4b53cSBarry Smith $ PetscErrorCode restricthook(DM global, VecScatter out, VecScatter in, DM block, void *ctx) 3436bb7acecfSBarry Smith + global - global `DM` 34375dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 34385dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3439bb7acecfSBarry Smith . block - block `DM` 34405dbd56e3SPeter Brune - ctx - optional user-defined function context 34415dbd56e3SPeter Brune 34425dbd56e3SPeter Brune Level: advanced 34435dbd56e3SPeter Brune 34445dbd56e3SPeter Brune Notes: 3445bb7acecfSBarry Smith This function is only needed if auxiliary data needs to be set up on subdomain `DM`s. 34465dbd56e3SPeter Brune 34475dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34485dbd56e3SPeter Brune 34495dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3450bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34515dbd56e3SPeter Brune 34521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 34535dbd56e3SPeter Brune @*/ 3454d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3455d71ae5a4SJacob Faibussowitsch { 3456be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34575dbd56e3SPeter Brune 34585dbd56e3SPeter Brune PetscFunctionBegin; 34595dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3460b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34613ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3462b3a6b972SJed Brown } 34639566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 34645dbd56e3SPeter Brune link->restricthook = restricthook; 3465be081cd6SPeter Brune link->ddhook = ddhook; 34665dbd56e3SPeter Brune link->ctx = ctx; 34670298fd71SBarry Smith link->next = NULL; 34685dbd56e3SPeter Brune *p = link; 34693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34705dbd56e3SPeter Brune } 34715dbd56e3SPeter Brune 3472b3a6b972SJed Brown /*@C 3473b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3474b3a6b972SJed Brown 347520f4b53cSBarry Smith Logically Collective; No Fortran Support 3476b3a6b972SJed Brown 34774165533cSJose E. Roman Input Parameters: 3478bb7acecfSBarry Smith + global - global `DM` 3479bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3480b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 348120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3482b3a6b972SJed Brown 3483b3a6b972SJed Brown Level: advanced 3484b3a6b972SJed Brown 34851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3486b3a6b972SJed Brown @*/ 3487d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3488d71ae5a4SJacob Faibussowitsch { 3489b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3490b3a6b972SJed Brown 3491b3a6b972SJed Brown PetscFunctionBegin; 3492b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3493b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3494b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3495b3a6b972SJed Brown link = *p; 3496b3a6b972SJed Brown *p = link->next; 34979566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3498b3a6b972SJed Brown break; 3499b3a6b972SJed Brown } 3500b3a6b972SJed Brown } 35013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3502b3a6b972SJed Brown } 3503b3a6b972SJed Brown 35045dbd56e3SPeter Brune /*@ 3505bb7acecfSBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()` 35065dbd56e3SPeter Brune 35075dbd56e3SPeter Brune Collective if any hooks are 35085dbd56e3SPeter Brune 35094165533cSJose E. Roman Input Parameters: 3510bb7acecfSBarry Smith + fine - finer `DM` to use as a base 3511be081cd6SPeter Brune . oscatter - scatter from domain global vector filling subdomain global vector with overlap 3512be081cd6SPeter Brune . gscatter - scatter from domain global vector filling subdomain local vector with ghosts 3513bb7acecfSBarry Smith - coarse - coarser `DM` to update 35145dbd56e3SPeter Brune 35155dbd56e3SPeter Brune Level: developer 35165dbd56e3SPeter Brune 35171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()` 35185dbd56e3SPeter Brune @*/ 3519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3520d71ae5a4SJacob Faibussowitsch { 3521be081cd6SPeter Brune DMSubDomainHookLink link; 35225dbd56e3SPeter Brune 35235dbd56e3SPeter Brune PetscFunctionBegin; 3524be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35251baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35265dbd56e3SPeter Brune } 35273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35285dbd56e3SPeter Brune } 35295dbd56e3SPeter Brune 35305fe1f584SPeter Brune /*@ 3531bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35325fe1f584SPeter Brune 35335fe1f584SPeter Brune Not Collective 35345fe1f584SPeter Brune 35355fe1f584SPeter Brune Input Parameter: 3536bb7acecfSBarry Smith . dm - the `DM` object 35375fe1f584SPeter Brune 35385fe1f584SPeter Brune Output Parameter: 35396a7d9d85SPeter Brune . level - number of coarsenings 35405fe1f584SPeter Brune 35415fe1f584SPeter Brune Level: developer 35425fe1f584SPeter Brune 35431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35445fe1f584SPeter Brune @*/ 3545d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3546d71ae5a4SJacob Faibussowitsch { 35475fe1f584SPeter Brune PetscFunctionBegin; 35485fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3549b9d85ea2SLisandro Dalcin PetscValidIntPointer(level, 2); 35505fe1f584SPeter Brune *level = dm->leveldown; 35513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35525fe1f584SPeter Brune } 35535fe1f584SPeter Brune 35549a64c4a8SMatthew G. Knepley /*@ 3555bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35569a64c4a8SMatthew G. Knepley 355720f4b53cSBarry Smith Collective 35589a64c4a8SMatthew G. Knepley 35599a64c4a8SMatthew G. Knepley Input Parameters: 3560bb7acecfSBarry Smith + dm - the `DM` object 35619a64c4a8SMatthew G. Knepley - level - number of coarsenings 35629a64c4a8SMatthew G. Knepley 35639a64c4a8SMatthew G. Knepley Level: developer 35649a64c4a8SMatthew G. Knepley 3565bb7acecfSBarry Smith Note: 3566bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3567bb7acecfSBarry Smith 35681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarsenLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35699a64c4a8SMatthew G. Knepley @*/ 3570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3571d71ae5a4SJacob Faibussowitsch { 35729a64c4a8SMatthew G. Knepley PetscFunctionBegin; 35739a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35749a64c4a8SMatthew G. Knepley dm->leveldown = level; 35753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35769a64c4a8SMatthew G. Knepley } 35779a64c4a8SMatthew G. Knepley 357847c6ae99SBarry Smith /*@C 3579bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 358047c6ae99SBarry Smith 358120f4b53cSBarry Smith Collective 358247c6ae99SBarry Smith 3583d8d19677SJose E. Roman Input Parameters: 3584bb7acecfSBarry Smith + dm - the `DM` object 358547c6ae99SBarry Smith - nlevels - the number of levels of refinement 358647c6ae99SBarry Smith 358747c6ae99SBarry Smith Output Parameter: 3588bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 358947c6ae99SBarry Smith 359047c6ae99SBarry Smith Level: developer 359147c6ae99SBarry Smith 35921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 359347c6ae99SBarry Smith @*/ 3594d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3595d71ae5a4SJacob Faibussowitsch { 359647c6ae99SBarry Smith PetscFunctionBegin; 3597171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35987a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 35993ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 3600b9d85ea2SLisandro Dalcin PetscValidPointer(dmf, 3); 360147c6ae99SBarry Smith if (dm->ops->refinehierarchy) { 3602dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 360347c6ae99SBarry Smith } else if (dm->ops->refine) { 360447c6ae99SBarry Smith PetscInt i; 360547c6ae99SBarry Smith 36069566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 360748a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3608ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No RefineHierarchy for this DM yet"); 36093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 361047c6ae99SBarry Smith } 361147c6ae99SBarry Smith 361247c6ae99SBarry Smith /*@C 3613bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 361447c6ae99SBarry Smith 361520f4b53cSBarry Smith Collective 361647c6ae99SBarry Smith 3617d8d19677SJose E. Roman Input Parameters: 3618bb7acecfSBarry Smith + dm - the `DM` object 361947c6ae99SBarry Smith - nlevels - the number of levels of coarsening 362047c6ae99SBarry Smith 362147c6ae99SBarry Smith Output Parameter: 3622bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 362347c6ae99SBarry Smith 362447c6ae99SBarry Smith Level: developer 362547c6ae99SBarry Smith 36261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 362747c6ae99SBarry Smith @*/ 3628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3629d71ae5a4SJacob Faibussowitsch { 363047c6ae99SBarry Smith PetscFunctionBegin; 3631171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36327a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36333ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 363447c6ae99SBarry Smith PetscValidPointer(dmc, 3); 363547c6ae99SBarry Smith if (dm->ops->coarsenhierarchy) { 3636dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 363747c6ae99SBarry Smith } else if (dm->ops->coarsen) { 363847c6ae99SBarry Smith PetscInt i; 363947c6ae99SBarry Smith 36409566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 364148a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3642ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No CoarsenHierarchy for this DM yet"); 36433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 364447c6ae99SBarry Smith } 364547c6ae99SBarry Smith 36461a266240SBarry Smith /*@C 3647bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36481a266240SBarry Smith 3649bb7acecfSBarry Smith Logically Collective if the function is collective 36501a266240SBarry Smith 36511a266240SBarry Smith Input Parameters: 3652bb7acecfSBarry Smith + dm - the `DM` object 36531a266240SBarry Smith - destroy - the destroy function 36541a266240SBarry Smith 36551a266240SBarry Smith Level: intermediate 36561a266240SBarry Smith 36571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3658f07f9ceaSJed Brown @*/ 3659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3660d71ae5a4SJacob Faibussowitsch { 36611a266240SBarry Smith PetscFunctionBegin; 3662171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36631a266240SBarry Smith dm->ctxdestroy = destroy; 36643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36651a266240SBarry Smith } 36661a266240SBarry Smith 3667b07ff414SBarry Smith /*@ 3668bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 366947c6ae99SBarry Smith 367047c6ae99SBarry Smith Not Collective 367147c6ae99SBarry Smith 367247c6ae99SBarry Smith Input Parameters: 3673bb7acecfSBarry Smith + dm - the `DM` object 367447c6ae99SBarry Smith - ctx - the user context 367547c6ae99SBarry Smith 367647c6ae99SBarry Smith Level: intermediate 367747c6ae99SBarry Smith 3678bb7acecfSBarry Smith Note: 367935cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3680bb7acecfSBarry Smith 36811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 368247c6ae99SBarry Smith @*/ 3683d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3684d71ae5a4SJacob Faibussowitsch { 368547c6ae99SBarry Smith PetscFunctionBegin; 3686171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 368747c6ae99SBarry Smith dm->ctx = ctx; 36883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368947c6ae99SBarry Smith } 369047c6ae99SBarry Smith 369147c6ae99SBarry Smith /*@ 3692bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 369347c6ae99SBarry Smith 369447c6ae99SBarry Smith Not Collective 369547c6ae99SBarry Smith 369647c6ae99SBarry Smith Input Parameter: 3697bb7acecfSBarry Smith . dm - the `DM` object 369847c6ae99SBarry Smith 369947c6ae99SBarry Smith Output Parameter: 370047c6ae99SBarry Smith . ctx - the user context 370147c6ae99SBarry Smith 370247c6ae99SBarry Smith Level: intermediate 370347c6ae99SBarry Smith 3704bb7acecfSBarry Smith Note: 370535cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3706bb7acecfSBarry Smith 37071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 370847c6ae99SBarry Smith @*/ 3709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3710d71ae5a4SJacob Faibussowitsch { 371147c6ae99SBarry Smith PetscFunctionBegin; 3712171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37131b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 371547c6ae99SBarry Smith } 371647c6ae99SBarry Smith 371708da532bSDmitry Karpeev /*@C 3718bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 371908da532bSDmitry Karpeev 372020f4b53cSBarry Smith Logically Collective 372108da532bSDmitry Karpeev 3722d8d19677SJose E. Roman Input Parameters: 372308da532bSDmitry Karpeev + dm - the DM object 372420f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 372508da532bSDmitry Karpeev 372608da532bSDmitry Karpeev Level: intermediate 372708da532bSDmitry Karpeev 37281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3729db781477SPatrick Sanan `DMSetJacobian()` 373008da532bSDmitry Karpeev @*/ 3731d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3732d71ae5a4SJacob Faibussowitsch { 373308da532bSDmitry Karpeev PetscFunctionBegin; 37345a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 373508da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 373708da532bSDmitry Karpeev } 373808da532bSDmitry Karpeev 373908da532bSDmitry Karpeev /*@ 3740bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 374108da532bSDmitry Karpeev 374208da532bSDmitry Karpeev Not Collective 374308da532bSDmitry Karpeev 374408da532bSDmitry Karpeev Input Parameter: 3745bb7acecfSBarry Smith . dm - the `DM` object to destroy 374608da532bSDmitry Karpeev 374708da532bSDmitry Karpeev Output Parameter: 3748bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 374908da532bSDmitry Karpeev 375008da532bSDmitry Karpeev Level: developer 375108da532bSDmitry Karpeev 37521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 375308da532bSDmitry Karpeev @*/ 3754d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3755d71ae5a4SJacob Faibussowitsch { 375608da532bSDmitry Karpeev PetscFunctionBegin; 37575a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3758534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 375908da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 37603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376108da532bSDmitry Karpeev } 376208da532bSDmitry Karpeev 376308da532bSDmitry Karpeev /*@C 3764bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 376508da532bSDmitry Karpeev 376620f4b53cSBarry Smith Logically Collective 376708da532bSDmitry Karpeev 3768f899ff85SJose E. Roman Input Parameter: 3769bb7acecfSBarry Smith . dm - the `DM` object 377008da532bSDmitry Karpeev 377108da532bSDmitry Karpeev Output parameters: 377208da532bSDmitry Karpeev + xl - lower bound 377308da532bSDmitry Karpeev - xu - upper bound 377408da532bSDmitry Karpeev 3775907376e6SBarry Smith Level: advanced 3776907376e6SBarry Smith 377720f4b53cSBarry Smith Note: 377895452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 377908da532bSDmitry Karpeev 37801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 378108da532bSDmitry Karpeev @*/ 3782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3783d71ae5a4SJacob Faibussowitsch { 378408da532bSDmitry Karpeev PetscFunctionBegin; 37855a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 378608da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 37875a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3788dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 37893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379008da532bSDmitry Karpeev } 379108da532bSDmitry Karpeev 3792b0ae01b7SPeter Brune /*@ 3793bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3794b0ae01b7SPeter Brune 3795b0ae01b7SPeter Brune Not Collective 3796b0ae01b7SPeter Brune 3797b0ae01b7SPeter Brune Input Parameter: 3798b0ae01b7SPeter Brune . dm - the DM object 3799b0ae01b7SPeter Brune 3800b0ae01b7SPeter Brune Output Parameter: 3801bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3802b0ae01b7SPeter Brune 3803b0ae01b7SPeter Brune Level: developer 3804b0ae01b7SPeter Brune 38051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3806b0ae01b7SPeter Brune @*/ 3807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3808d71ae5a4SJacob Faibussowitsch { 3809b0ae01b7SPeter Brune PetscFunctionBegin; 38105a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3811534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3812b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3814b0ae01b7SPeter Brune } 3815b0ae01b7SPeter Brune 38163ad4599aSBarry Smith /*@ 3817bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38183ad4599aSBarry Smith 38193ad4599aSBarry Smith Not Collective 38203ad4599aSBarry Smith 38213ad4599aSBarry Smith Input Parameter: 3822bb7acecfSBarry Smith . dm - the `DM` object 38233ad4599aSBarry Smith 38243ad4599aSBarry Smith Output Parameter: 3825bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38263ad4599aSBarry Smith 38273ad4599aSBarry Smith Level: developer 38283ad4599aSBarry Smith 38291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38303ad4599aSBarry Smith @*/ 3831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3832d71ae5a4SJacob Faibussowitsch { 38333ad4599aSBarry Smith PetscFunctionBegin; 38345a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3835534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 38363ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38383ad4599aSBarry Smith } 38393ad4599aSBarry Smith 3840a7058e45SLawrence Mitchell /*@ 3841bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3842a7058e45SLawrence Mitchell 3843a7058e45SLawrence Mitchell Not Collective 3844a7058e45SLawrence Mitchell 3845a7058e45SLawrence Mitchell Input Parameter: 3846bb7acecfSBarry Smith . dm - the `DM` object 3847a7058e45SLawrence Mitchell 3848a7058e45SLawrence Mitchell Output Parameter: 3849bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3850a7058e45SLawrence Mitchell 3851a7058e45SLawrence Mitchell Level: developer 3852a7058e45SLawrence Mitchell 38531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3854a7058e45SLawrence Mitchell @*/ 3855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3856d71ae5a4SJacob Faibussowitsch { 3857a7058e45SLawrence Mitchell PetscFunctionBegin; 38585a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3859534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 3860dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3861ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 38623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3863a7058e45SLawrence Mitchell } 3864a7058e45SLawrence Mitchell 38650298fd71SBarry Smith PetscFunctionList DMList = NULL; 3866264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3867264ace61SBarry Smith 3868264ace61SBarry Smith /*@C 3869bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3870264ace61SBarry Smith 387120f4b53cSBarry Smith Collective 3872264ace61SBarry Smith 3873264ace61SBarry Smith Input Parameters: 3874bb7acecfSBarry Smith + dm - The `DM` object 3875bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3876264ace61SBarry Smith 3877264ace61SBarry Smith Options Database Key: 3878bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3879264ace61SBarry Smith 3880264ace61SBarry Smith Level: intermediate 3881264ace61SBarry Smith 3882bb7acecfSBarry Smith Note: 38830462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3884bb7acecfSBarry Smith 38851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3886264ace61SBarry Smith @*/ 3887d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3888d71ae5a4SJacob Faibussowitsch { 3889264ace61SBarry Smith PetscErrorCode (*r)(DM); 3890264ace61SBarry Smith PetscBool match; 3891264ace61SBarry Smith 3892264ace61SBarry Smith PetscFunctionBegin; 3893264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 38953ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3896264ace61SBarry Smith 38979566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 38989566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 38997a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3900264ace61SBarry Smith 3901dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39029566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39039566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39049566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3906264ace61SBarry Smith } 3907264ace61SBarry Smith 3908264ace61SBarry Smith /*@C 3909bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3910264ace61SBarry Smith 3911264ace61SBarry Smith Not Collective 3912264ace61SBarry Smith 3913264ace61SBarry Smith Input Parameter: 3914bb7acecfSBarry Smith . dm - The `DM` 3915264ace61SBarry Smith 3916264ace61SBarry Smith Output Parameter: 3917bb7acecfSBarry Smith . type - The `DMType` name 3918264ace61SBarry Smith 3919264ace61SBarry Smith Level: intermediate 3920264ace61SBarry Smith 39211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3922264ace61SBarry Smith @*/ 3923d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3924d71ae5a4SJacob Faibussowitsch { 3925264ace61SBarry Smith PetscFunctionBegin; 3926264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3927c959eef4SJed Brown PetscValidPointer(type, 2); 39289566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3929264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3931264ace61SBarry Smith } 3932264ace61SBarry Smith 393367a56275SMatthew G Knepley /*@C 3934bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 393567a56275SMatthew G Knepley 393620f4b53cSBarry Smith Collective 393767a56275SMatthew G Knepley 393867a56275SMatthew G Knepley Input Parameters: 3939bb7acecfSBarry Smith + dm - the `DM` 3940bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 394167a56275SMatthew G Knepley 394267a56275SMatthew G Knepley Output Parameter: 3943bb7acecfSBarry Smith . M - pointer to new `DM` 394467a56275SMatthew G Knepley 394520f4b53cSBarry Smith Level: intermediate 394620f4b53cSBarry Smith 394767a56275SMatthew G Knepley Notes: 3948bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3949bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3950bb7acecfSBarry Smith of the input `DM`. 395167a56275SMatthew G Knepley 39521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 395367a56275SMatthew G Knepley @*/ 3954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3955d71ae5a4SJacob Faibussowitsch { 395667a56275SMatthew G Knepley DM B; 395767a56275SMatthew G Knepley char convname[256]; 3958c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 395967a56275SMatthew G Knepley 396067a56275SMatthew G Knepley PetscFunctionBegin; 396167a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 396267a56275SMatthew G Knepley PetscValidType(dm, 1); 396367a56275SMatthew G Knepley PetscValidPointer(M, 3); 39649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 39659566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3966c067b6caSMatthew G. Knepley if (sametype) { 3967c067b6caSMatthew G. Knepley *M = dm; 39689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 39693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3970c067b6caSMatthew G. Knepley } else { 39710298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 397267a56275SMatthew G Knepley 397367a56275SMatthew G Knepley /* 397467a56275SMatthew G Knepley Order of precedence: 397567a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 397667a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 397767a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 397867a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 397967a56275SMatthew G Knepley 5) Use a really basic converter. 398067a56275SMatthew G Knepley */ 398167a56275SMatthew G Knepley 398267a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 39839566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 39849566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 39859566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 39869566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 39879566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 39889566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 398967a56275SMatthew G Knepley if (conv) goto foundconv; 399067a56275SMatthew G Knepley 399167a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 39929566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 39939566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 39949566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 39959566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 39969566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 39979566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 39989566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 39999566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 400067a56275SMatthew G Knepley if (conv) { 40019566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 400267a56275SMatthew G Knepley goto foundconv; 400367a56275SMatthew G Knepley } 400467a56275SMatthew G Knepley 400567a56275SMatthew G Knepley #if 0 400667a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 400767a56275SMatthew G Knepley conv = B->ops->convertfrom; 40089566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 400967a56275SMatthew G Knepley if (conv) goto foundconv; 401067a56275SMatthew G Knepley 401167a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 401267a56275SMatthew G Knepley if (dm->ops->convert) { 401367a56275SMatthew G Knepley conv = dm->ops->convert; 401467a56275SMatthew G Knepley } 401567a56275SMatthew G Knepley if (conv) goto foundconv; 401667a56275SMatthew G Knepley #endif 401767a56275SMatthew G Knepley 401867a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 401998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 402067a56275SMatthew G Knepley 402167a56275SMatthew G Knepley foundconv: 40229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40239566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 402412fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 402590b157c4SStefano Zampini { 40264fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40276858538eSMatthew G. Knepley 40284fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40294fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4030c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40319566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40329566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40339566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40349566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 403512fa691eSMatthew G. Knepley } 40369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 403767a56275SMatthew G Knepley } 40389566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 404067a56275SMatthew G Knepley } 4041264ace61SBarry Smith 4042264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4043264ace61SBarry Smith 4044264ace61SBarry Smith /*@C 4045bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40461c84c290SBarry Smith 40471c84c290SBarry Smith Not Collective 40481c84c290SBarry Smith 40491c84c290SBarry Smith Input Parameters: 405020f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 405120f4b53cSBarry Smith - function - The creation routine itself 405220f4b53cSBarry Smith 405320f4b53cSBarry Smith Level: advanced 40541c84c290SBarry Smith 40551c84c290SBarry Smith Notes: 405620f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40571c84c290SBarry Smith 40581c84c290SBarry Smith Sample usage: 40591c84c290SBarry Smith .vb 4060bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40611c84c290SBarry Smith .ve 40621c84c290SBarry Smith 406320f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 40641c84c290SBarry Smith .vb 40651c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 40661c84c290SBarry Smith DMSetType(DM,"my_da"); 40671c84c290SBarry Smith .ve 40681c84c290SBarry Smith or at runtime via the option 40691c84c290SBarry Smith .vb 40701c84c290SBarry Smith -da_type my_da 40711c84c290SBarry Smith .ve 4072264ace61SBarry Smith 40731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4074264ace61SBarry Smith @*/ 4075d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4076d71ae5a4SJacob Faibussowitsch { 4077264ace61SBarry Smith PetscFunctionBegin; 40789566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 40799566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 40803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4081264ace61SBarry Smith } 4082264ace61SBarry Smith 4083b859378eSBarry Smith /*@C 4084bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4085b859378eSBarry Smith 408620f4b53cSBarry Smith Collective 4087b859378eSBarry Smith 4088b859378eSBarry Smith Input Parameters: 4089bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4090bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4091bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4092bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4093b859378eSBarry Smith 4094b859378eSBarry Smith Level: intermediate 4095b859378eSBarry Smith 4096b859378eSBarry Smith Notes: 409755849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4098b859378eSBarry Smith 4099bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4100bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4101bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4102cd7e8a5eSksagiyam 41031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4104b859378eSBarry Smith @*/ 4105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4106d71ae5a4SJacob Faibussowitsch { 41079331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4108b859378eSBarry Smith 4109b859378eSBarry Smith PetscFunctionBegin; 4110b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4111b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41129566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41159566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41169331c7a4SMatthew G. Knepley if (isbinary) { 41179331c7a4SMatthew G. Knepley PetscInt classid; 41189331c7a4SMatthew G. Knepley char type[256]; 4119b859378eSBarry Smith 41209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41217a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41229566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41239566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4124dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41259331c7a4SMatthew G. Knepley } else if (ishdf5) { 4126dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41279331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4130b859378eSBarry Smith } 4131b859378eSBarry Smith 41327da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41337da65231SMatthew G Knepley 4134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4135d71ae5a4SJacob Faibussowitsch { 41361d47ebbbSSatish Balay PetscInt f; 41371b30c384SMatthew G Knepley 41387da65231SMatthew G Knepley PetscFunctionBegin; 413963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 414048a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41427da65231SMatthew G Knepley } 41437da65231SMatthew G Knepley 4144d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4145d71ae5a4SJacob Faibussowitsch { 41461b30c384SMatthew G Knepley PetscInt f, g; 41477da65231SMatthew G Knepley 41487da65231SMatthew G Knepley PetscFunctionBegin; 414963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41501d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 41519566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 415248a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 41539566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 41547da65231SMatthew G Knepley } 41553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41567da65231SMatthew G Knepley } 4157e7c4fc90SDmitry Karpeev 4158d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4159d71ae5a4SJacob Faibussowitsch { 41600c5b8624SToby Isaac PetscInt localSize, bs; 41610c5b8624SToby Isaac PetscMPIInt size; 41620c5b8624SToby Isaac Vec x, xglob; 41630c5b8624SToby Isaac const PetscScalar *xarray; 4164e759306cSMatthew G. Knepley 4165e759306cSMatthew G. Knepley PetscFunctionBegin; 41669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 41679566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 41689566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 41699566063dSJacob Faibussowitsch PetscCall(VecChop(x, tol)); 41709566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 41710c5b8624SToby Isaac if (size > 1) { 41729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 41739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 41749566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 41759566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 41760c5b8624SToby Isaac } else { 41770c5b8624SToby Isaac xglob = x; 41780c5b8624SToby Isaac } 41799566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 41800c5b8624SToby Isaac if (size > 1) { 41819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 41829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 41830c5b8624SToby Isaac } 41849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 41853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4186e759306cSMatthew G. Knepley } 4187e759306cSMatthew G. Knepley 418888ed4aceSMatthew G Knepley /*@ 4189bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4190061576a5SJed Brown 4191061576a5SJed Brown Input Parameter: 4192bb7acecfSBarry Smith . dm - The `DM` 4193061576a5SJed Brown 4194061576a5SJed Brown Output Parameter: 4195bb7acecfSBarry Smith . section - The `PetscSection` 4196061576a5SJed Brown 419720f4b53cSBarry Smith Options Database Key: 4198bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4199061576a5SJed Brown 4200061576a5SJed Brown Level: advanced 4201061576a5SJed Brown 4202061576a5SJed Brown Notes: 4203bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4204061576a5SJed Brown 4205bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4206061576a5SJed Brown 42071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4208061576a5SJed Brown @*/ 4209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4210d71ae5a4SJacob Faibussowitsch { 4211061576a5SJed Brown PetscFunctionBegin; 42129566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4214061576a5SJed Brown } 4215061576a5SJed Brown 4216061576a5SJed Brown /*@ 4217bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 421888ed4aceSMatthew G Knepley 421988ed4aceSMatthew G Knepley Input Parameter: 4220bb7acecfSBarry Smith . dm - The `DM` 422188ed4aceSMatthew G Knepley 422288ed4aceSMatthew G Knepley Output Parameter: 4223bb7acecfSBarry Smith . section - The `PetscSection` 422488ed4aceSMatthew G Knepley 422520f4b53cSBarry Smith Options Database Key: 4226bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4227e5893cccSMatthew G. Knepley 422888ed4aceSMatthew G Knepley Level: intermediate 422988ed4aceSMatthew G Knepley 4230bb7acecfSBarry Smith Note: 4231bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 423288ed4aceSMatthew G Knepley 42331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 423488ed4aceSMatthew G Knepley @*/ 4235d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4236d71ae5a4SJacob Faibussowitsch { 423788ed4aceSMatthew G Knepley PetscFunctionBegin; 423888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 423988ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 42401bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4241e5e52638SMatthew G. Knepley PetscInt d; 4242e5e52638SMatthew G. Knepley 424345480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 424445480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 424545480ffeSMatthew G. Knepley PetscViewer viewer; 424645480ffeSMatthew G. Knepley PetscViewerFormat format; 424745480ffeSMatthew G. Knepley PetscBool flg; 424845480ffeSMatthew G. Knepley 42499566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 42509566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 425145480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 42529566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 42539566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 425445480ffeSMatthew G. Knepley } 425545480ffeSMatthew G. Knepley if (flg) { 42569566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 42579566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 42589566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 425945480ffeSMatthew G. Knepley } 426045480ffeSMatthew G. Knepley } 4261dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 42629566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 42632f0f8703SMatthew G. Knepley } 42641bb6d2a8SBarry Smith *section = dm->localSection; 42653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 426688ed4aceSMatthew G Knepley } 426788ed4aceSMatthew G Knepley 426888ed4aceSMatthew G Knepley /*@ 4269bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4270061576a5SJed Brown 4271061576a5SJed Brown Input Parameters: 4272bb7acecfSBarry Smith + dm - The `DM` 4273bb7acecfSBarry Smith - section - The `PetscSection` 4274061576a5SJed Brown 4275061576a5SJed Brown Level: advanced 4276061576a5SJed Brown 4277061576a5SJed Brown Notes: 4278bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4279061576a5SJed Brown 4280bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4281061576a5SJed Brown 42821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4283061576a5SJed Brown @*/ 4284d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4285d71ae5a4SJacob Faibussowitsch { 4286061576a5SJed Brown PetscFunctionBegin; 42879566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 42883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4289061576a5SJed Brown } 4290061576a5SJed Brown 4291061576a5SJed Brown /*@ 4292bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 429388ed4aceSMatthew G Knepley 429488ed4aceSMatthew G Knepley Input Parameters: 4295bb7acecfSBarry Smith + dm - The `DM` 4296bb7acecfSBarry Smith - section - The `PetscSection` 429788ed4aceSMatthew G Knepley 429888ed4aceSMatthew G Knepley Level: intermediate 429988ed4aceSMatthew G Knepley 4300bb7acecfSBarry Smith Note: 4301bb7acecfSBarry Smith Any existing Section will be destroyed 430288ed4aceSMatthew G Knepley 43031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 430488ed4aceSMatthew G Knepley @*/ 4305d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4306d71ae5a4SJacob Faibussowitsch { 4307c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4308af122d2aSMatthew G Knepley PetscInt f; 430988ed4aceSMatthew G Knepley 431088ed4aceSMatthew G Knepley PetscFunctionBegin; 431188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4312b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43149566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43151bb6d2a8SBarry Smith dm->localSection = section; 43169566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4317af122d2aSMatthew G Knepley if (numFields) { 43189566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4319af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43200f21e855SMatthew G. Knepley PetscObject disc; 4321af122d2aSMatthew G Knepley const char *name; 4322af122d2aSMatthew G Knepley 43239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43249566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4326af122d2aSMatthew G Knepley } 4327af122d2aSMatthew G Knepley } 4328e87a4003SBarry Smith /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */ 43299566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 43303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 433188ed4aceSMatthew G Knepley } 433288ed4aceSMatthew G Knepley 43339435951eSToby Isaac /*@ 4334bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 43359435951eSToby Isaac 433620f4b53cSBarry Smith not Collective 4337e228b242SToby Isaac 43389435951eSToby Isaac Input Parameter: 4339bb7acecfSBarry Smith . dm - The `DM` 43409435951eSToby Isaac 4341d8d19677SJose E. Roman Output Parameters: 434220f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 434320f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 434479769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 43459435951eSToby Isaac 43469435951eSToby Isaac Level: advanced 43479435951eSToby Isaac 4348bb7acecfSBarry Smith Note: 4349bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 43509435951eSToby Isaac 43511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 43529435951eSToby Isaac @*/ 4353d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4354d71ae5a4SJacob Faibussowitsch { 43559435951eSToby Isaac PetscFunctionBegin; 43569435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4357dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 43583b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 43593b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 436079769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 43613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43629435951eSToby Isaac } 43639435951eSToby Isaac 43649435951eSToby Isaac /*@ 4365bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 43669435951eSToby Isaac 436720f4b53cSBarry Smith Collective 4368e228b242SToby Isaac 43699435951eSToby Isaac Input Parameters: 4370bb7acecfSBarry Smith + dm - The `DM` 4371bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 437220f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 437320f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 43749435951eSToby Isaac 43759435951eSToby Isaac Level: advanced 43769435951eSToby Isaac 437720f4b53cSBarry Smith Notes: 437820f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 437920f4b53cSBarry Smith 438020f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 438120f4b53cSBarry Smith 4382bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 43839435951eSToby Isaac 43841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 43859435951eSToby Isaac @*/ 4386d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4387d71ae5a4SJacob Faibussowitsch { 4388e228b242SToby Isaac PetscMPIInt result; 43899435951eSToby Isaac 43909435951eSToby Isaac PetscFunctionBegin; 43919435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4392e228b242SToby Isaac if (section) { 4393e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 43957a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4396e228b242SToby Isaac } 4397e228b242SToby Isaac if (mat) { 4398e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 43999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44007a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4401e228b242SToby Isaac } 440279769bd5SJed Brown if (bias) { 440379769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 440579769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 440679769bd5SJed Brown } 44079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44089566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44093b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44109566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44123b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44139566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 441579769bd5SJed Brown dm->defaultConstraint.bias = bias; 44163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44179435951eSToby Isaac } 44189435951eSToby Isaac 4419497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4420507e4973SMatthew G. Knepley /* 4421bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4422507e4973SMatthew G. Knepley 4423507e4973SMatthew G. Knepley Input Parameters: 4424bb7acecfSBarry Smith + dm - The `DM` 4425bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4426bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4427507e4973SMatthew G. Knepley 4428507e4973SMatthew G. Knepley Level: intermediate 4429507e4973SMatthew G. Knepley 44301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4431507e4973SMatthew G. Knepley */ 4432d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4433d71ae5a4SJacob Faibussowitsch { 4434507e4973SMatthew G. Knepley MPI_Comm comm; 4435507e4973SMatthew G. Knepley PetscLayout layout; 4436507e4973SMatthew G. Knepley const PetscInt *ranges; 4437507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4438507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4439507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4440507e4973SMatthew G. Knepley 4441507e4973SMatthew G. Knepley PetscFunctionBegin; 44429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4443507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 44459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 44469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 44479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 44489566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 44499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 44509566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 44519566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 44529566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4453507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4454f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4455507e4973SMatthew G. Knepley 44569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 44579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 44589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 44599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 44609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 44619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4462507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 44639371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 44649371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 44659371c9d4SSatish Balay valid = PETSC_FALSE; 44669371c9d4SSatish Balay } 44679371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 44689371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 44699371c9d4SSatish Balay valid = PETSC_FALSE; 44709371c9d4SSatish Balay } 4471507e4973SMatthew G. Knepley if (gdof < 0) { 4472507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4473507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4474507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4475507e4973SMatthew G. Knepley 44769566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4477507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 44789371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 44799371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 44809371c9d4SSatish Balay valid = PETSC_FALSE; 44819371c9d4SSatish Balay break; 44829371c9d4SSatish Balay } 4483507e4973SMatthew G. Knepley } 4484507e4973SMatthew G. Knepley } 4485507e4973SMatthew G. Knepley } 44869566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 44879566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 44881c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4489507e4973SMatthew G. Knepley if (!gvalid) { 44909566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4491507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4492507e4973SMatthew G. Knepley } 44933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4494507e4973SMatthew G. Knepley } 4495f741bcd2SMatthew G. Knepley #endif 4496507e4973SMatthew G. Knepley 44975f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 44986725e60dSJed Brown { 44996725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45006725e60dSJed Brown PetscFunctionBegin; 45016725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45026725e60dSJed Brown PetscValidPointer(sf, 2); 45035f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45046725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45056725e60dSJed Brown else *sf = dm->sf; 45063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45076725e60dSJed Brown } 45086725e60dSJed Brown 450988ed4aceSMatthew G Knepley /*@ 4510bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 451188ed4aceSMatthew G Knepley 451220f4b53cSBarry Smith Collective 45138b1ab98fSJed Brown 451488ed4aceSMatthew G Knepley Input Parameter: 4515bb7acecfSBarry Smith . dm - The `DM` 451688ed4aceSMatthew G Knepley 451788ed4aceSMatthew G Knepley Output Parameter: 4518bb7acecfSBarry Smith . section - The `PetscSection` 451988ed4aceSMatthew G Knepley 452088ed4aceSMatthew G Knepley Level: intermediate 452188ed4aceSMatthew G Knepley 4522bb7acecfSBarry Smith Note: 4523bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 452488ed4aceSMatthew G Knepley 45251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 452688ed4aceSMatthew G Knepley @*/ 4527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4528d71ae5a4SJacob Faibussowitsch { 452988ed4aceSMatthew G Knepley PetscFunctionBegin; 453088ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 453188ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 45321bb6d2a8SBarry Smith if (!dm->globalSection) { 4533fd59a867SMatthew G. Knepley PetscSection s; 45346725e60dSJed Brown PetscSF sf; 4535fd59a867SMatthew G. Knepley 45369566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 45377a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 45387a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 45395f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 45406725e60dSJed Brown PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 45419566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 45429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 45439566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 454488ed4aceSMatthew G Knepley } 45451bb6d2a8SBarry Smith *section = dm->globalSection; 45463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 454788ed4aceSMatthew G Knepley } 454888ed4aceSMatthew G Knepley 4549b21d0597SMatthew G Knepley /*@ 4550bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4551b21d0597SMatthew G Knepley 4552b21d0597SMatthew G Knepley Input Parameters: 4553bb7acecfSBarry Smith + dm - The `DM` 45542fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4555b21d0597SMatthew G Knepley 4556b21d0597SMatthew G Knepley Level: intermediate 4557b21d0597SMatthew G Knepley 4558bb7acecfSBarry Smith Note: 4559bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4560b21d0597SMatthew G Knepley 45611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4562b21d0597SMatthew G Knepley @*/ 4563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4564d71ae5a4SJacob Faibussowitsch { 4565b21d0597SMatthew G Knepley PetscFunctionBegin; 4566b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45675080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 45689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45699566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 45701bb6d2a8SBarry Smith dm->globalSection = section; 4571497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 45729566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4573507e4973SMatthew G. Knepley #endif 45743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4575b21d0597SMatthew G Knepley } 4576b21d0597SMatthew G Knepley 457788ed4aceSMatthew G Knepley /*@ 4578bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4579bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 458088ed4aceSMatthew G Knepley 458188ed4aceSMatthew G Knepley Input Parameter: 4582bb7acecfSBarry Smith . dm - The `DM` 458388ed4aceSMatthew G Knepley 458488ed4aceSMatthew G Knepley Output Parameter: 4585bb7acecfSBarry Smith . sf - The `PetscSF` 458688ed4aceSMatthew G Knepley 458788ed4aceSMatthew G Knepley Level: intermediate 458888ed4aceSMatthew G Knepley 4589bb7acecfSBarry Smith Note: 4590bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 459188ed4aceSMatthew G Knepley 45921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 459388ed4aceSMatthew G Knepley @*/ 4594d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4595d71ae5a4SJacob Faibussowitsch { 459688ed4aceSMatthew G Knepley PetscInt nroots; 459788ed4aceSMatthew G Knepley 459888ed4aceSMatthew G Knepley PetscFunctionBegin; 459988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 460088ed4aceSMatthew G Knepley PetscValidPointer(sf, 2); 460148a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46029566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 460388ed4aceSMatthew G Knepley if (nroots < 0) { 460488ed4aceSMatthew G Knepley PetscSection section, gSection; 460588ed4aceSMatthew G Knepley 46069566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 460731ea6d37SMatthew G Knepley if (section) { 46089566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46099566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 461031ea6d37SMatthew G Knepley } else { 46110298fd71SBarry Smith *sf = NULL; 46123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 461331ea6d37SMatthew G Knepley } 461488ed4aceSMatthew G Knepley } 46151bb6d2a8SBarry Smith *sf = dm->sectionSF; 46163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 461788ed4aceSMatthew G Knepley } 461888ed4aceSMatthew G Knepley 461988ed4aceSMatthew G Knepley /*@ 4620bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 462188ed4aceSMatthew G Knepley 462288ed4aceSMatthew G Knepley Input Parameters: 4623bb7acecfSBarry Smith + dm - The `DM` 4624bb7acecfSBarry Smith - sf - The `PetscSF` 462588ed4aceSMatthew G Knepley 462688ed4aceSMatthew G Knepley Level: intermediate 462788ed4aceSMatthew G Knepley 4628bb7acecfSBarry Smith Note: 4629bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 463088ed4aceSMatthew G Knepley 46311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 463288ed4aceSMatthew G Knepley @*/ 4633d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4634d71ae5a4SJacob Faibussowitsch { 463588ed4aceSMatthew G Knepley PetscFunctionBegin; 463688ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4637b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 46389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 46399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 46401bb6d2a8SBarry Smith dm->sectionSF = sf; 46413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464288ed4aceSMatthew G Knepley } 464388ed4aceSMatthew G Knepley 464488ed4aceSMatthew G Knepley /*@C 4645bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 464688ed4aceSMatthew G Knepley describing the data layout. 464788ed4aceSMatthew G Knepley 464888ed4aceSMatthew G Knepley Input Parameters: 4649bb7acecfSBarry Smith + dm - The `DM` 4650bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4651bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 465288ed4aceSMatthew G Knepley 46531bb6d2a8SBarry Smith Level: developer 46541bb6d2a8SBarry Smith 4655bb7acecfSBarry Smith Note: 4656bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4657bb7acecfSBarry Smith 4658bb7acecfSBarry Smith Developer Note: 4659bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4660bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4661bb7acecfSBarry Smith input and should just obtain them from the `DM`? 46621bb6d2a8SBarry Smith 46631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 466488ed4aceSMatthew G Knepley @*/ 4665d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4666d71ae5a4SJacob Faibussowitsch { 466788ed4aceSMatthew G Knepley PetscFunctionBegin; 466888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46699566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 46703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 467188ed4aceSMatthew G Knepley } 4672af122d2aSMatthew G Knepley 4673b21d0597SMatthew G Knepley /*@ 4674bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4675bb7acecfSBarry Smith 4676bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4677b21d0597SMatthew G Knepley 4678b21d0597SMatthew G Knepley Input Parameter: 4679bb7acecfSBarry Smith . dm - The `DM` 4680b21d0597SMatthew G Knepley 4681b21d0597SMatthew G Knepley Output Parameter: 4682bb7acecfSBarry Smith . sf - The `PetscSF` 4683b21d0597SMatthew G Knepley 4684b21d0597SMatthew G Knepley Level: intermediate 4685b21d0597SMatthew G Knepley 4686bb7acecfSBarry Smith Note: 4687bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4688b21d0597SMatthew G Knepley 46891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4690b21d0597SMatthew G Knepley @*/ 4691d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4692d71ae5a4SJacob Faibussowitsch { 4693b21d0597SMatthew G Knepley PetscFunctionBegin; 4694b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4695b21d0597SMatthew G Knepley PetscValidPointer(sf, 2); 4696b21d0597SMatthew G Knepley *sf = dm->sf; 46973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4698b21d0597SMatthew G Knepley } 4699b21d0597SMatthew G Knepley 4700057b4bcdSMatthew G Knepley /*@ 4701bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4702bb7acecfSBarry Smith 470320f4b53cSBarry Smith Collective 4704057b4bcdSMatthew G Knepley 4705057b4bcdSMatthew G Knepley Input Parameters: 4706bb7acecfSBarry Smith + dm - The `DM` 4707bb7acecfSBarry Smith - sf - The `PetscSF` 4708057b4bcdSMatthew G Knepley 4709057b4bcdSMatthew G Knepley Level: intermediate 4710057b4bcdSMatthew G Knepley 47111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4712057b4bcdSMatthew G Knepley @*/ 4713d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4714d71ae5a4SJacob Faibussowitsch { 4715057b4bcdSMatthew G Knepley PetscFunctionBegin; 4716057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4717b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47189566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47199566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4720057b4bcdSMatthew G Knepley dm->sf = sf; 47213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4722057b4bcdSMatthew G Knepley } 4723057b4bcdSMatthew G Knepley 47244f37162bSMatthew G. Knepley /*@ 4725bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47264f37162bSMatthew G. Knepley 47274f37162bSMatthew G. Knepley Input Parameter: 4728bb7acecfSBarry Smith . dm - The `DM` 47294f37162bSMatthew G. Knepley 47304f37162bSMatthew G. Knepley Output Parameter: 4731bb7acecfSBarry Smith . sf - The `PetscSF` 47324f37162bSMatthew G. Knepley 47334f37162bSMatthew G. Knepley Level: intermediate 47344f37162bSMatthew G. Knepley 4735bb7acecfSBarry Smith Note: 4736bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 47374f37162bSMatthew G. Knepley 47381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 47394f37162bSMatthew G. Knepley @*/ 4740d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4741d71ae5a4SJacob Faibussowitsch { 47424f37162bSMatthew G. Knepley PetscFunctionBegin; 47434f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47444f37162bSMatthew G. Knepley PetscValidPointer(sf, 2); 47454f37162bSMatthew G. Knepley *sf = dm->sfNatural; 47463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47474f37162bSMatthew G. Knepley } 47484f37162bSMatthew G. Knepley 47494f37162bSMatthew G. Knepley /*@ 47504f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 47514f37162bSMatthew G. Knepley 47524f37162bSMatthew G. Knepley Input Parameters: 47534f37162bSMatthew G. Knepley + dm - The DM 47544f37162bSMatthew G. Knepley - sf - The PetscSF 47554f37162bSMatthew G. Knepley 47564f37162bSMatthew G. Knepley Level: intermediate 47574f37162bSMatthew G. Knepley 47581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 47594f37162bSMatthew G. Knepley @*/ 4760d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4761d71ae5a4SJacob Faibussowitsch { 47624f37162bSMatthew G. Knepley PetscFunctionBegin; 47634f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47644f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 47674f37162bSMatthew G. Knepley dm->sfNatural = sf; 47683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 47694f37162bSMatthew G. Knepley } 47704f37162bSMatthew G. Knepley 4771d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4772d71ae5a4SJacob Faibussowitsch { 477334aa8a36SMatthew G. Knepley PetscClassId id; 477434aa8a36SMatthew G. Knepley 477534aa8a36SMatthew G. Knepley PetscFunctionBegin; 47769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 477734aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 47789566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 477934aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 47809566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 478117c1d62eSMatthew G. Knepley } else { 47829566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 478334aa8a36SMatthew G. Knepley } 47843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478534aa8a36SMatthew G. Knepley } 478634aa8a36SMatthew G. Knepley 4787d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4788d71ae5a4SJacob Faibussowitsch { 478944a7f3ddSMatthew G. Knepley RegionField *tmpr; 479044a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 479144a7f3ddSMatthew G. Knepley 479244a7f3ddSMatthew G. Knepley PetscFunctionBegin; 47933ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 47949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 479544a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 47969371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 47979371c9d4SSatish Balay tmpr[f].disc = NULL; 47989371c9d4SSatish Balay tmpr[f].label = NULL; 47999371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48009371c9d4SSatish Balay } 48019566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 480244a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 480344a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480544a7f3ddSMatthew G. Knepley } 480644a7f3ddSMatthew G. Knepley 480744a7f3ddSMatthew G. Knepley /*@ 480820f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 480944a7f3ddSMatthew G. Knepley 481020f4b53cSBarry Smith Logically Collective 481144a7f3ddSMatthew G. Knepley 481244a7f3ddSMatthew G. Knepley Input Parameter: 481320f4b53cSBarry Smith . dm - The `DM` 481444a7f3ddSMatthew G. Knepley 481544a7f3ddSMatthew G. Knepley Level: intermediate 481644a7f3ddSMatthew G. Knepley 48171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 481844a7f3ddSMatthew G. Knepley @*/ 4819d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4820d71ae5a4SJacob Faibussowitsch { 482144a7f3ddSMatthew G. Knepley PetscInt f; 482244a7f3ddSMatthew G. Knepley 482344a7f3ddSMatthew G. Knepley PetscFunctionBegin; 482444a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 482544a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48269566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 48279566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 482844a7f3ddSMatthew G. Knepley } 48299566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 483044a7f3ddSMatthew G. Knepley dm->fields = NULL; 483144a7f3ddSMatthew G. Knepley dm->Nf = 0; 48323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483344a7f3ddSMatthew G. Knepley } 483444a7f3ddSMatthew G. Knepley 4835689b5837SMatthew G. Knepley /*@ 483620f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4837689b5837SMatthew G. Knepley 483820f4b53cSBarry Smith Not Collective 4839689b5837SMatthew G. Knepley 4840689b5837SMatthew G. Knepley Input Parameter: 484120f4b53cSBarry Smith . dm - The `DM` 4842689b5837SMatthew G. Knepley 4843689b5837SMatthew G. Knepley Output Parameter: 4844689b5837SMatthew G. Knepley . Nf - The number of fields 4845689b5837SMatthew G. Knepley 4846689b5837SMatthew G. Knepley Level: intermediate 4847689b5837SMatthew G. Knepley 48481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4849689b5837SMatthew G. Knepley @*/ 4850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4851d71ae5a4SJacob Faibussowitsch { 48520f21e855SMatthew G. Knepley PetscFunctionBegin; 48530f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4854534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 485544a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 48563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4857af122d2aSMatthew G Knepley } 4858af122d2aSMatthew G Knepley 4859689b5837SMatthew G. Knepley /*@ 486020f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4861689b5837SMatthew G. Knepley 486220f4b53cSBarry Smith Logically Collective 4863689b5837SMatthew G. Knepley 4864689b5837SMatthew G. Knepley Input Parameters: 486520f4b53cSBarry Smith + dm - The `DM` 4866689b5837SMatthew G. Knepley - Nf - The number of fields 4867689b5837SMatthew G. Knepley 4868689b5837SMatthew G. Knepley Level: intermediate 4869689b5837SMatthew G. Knepley 48701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4871689b5837SMatthew G. Knepley @*/ 4872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4873d71ae5a4SJacob Faibussowitsch { 48740f21e855SMatthew G. Knepley PetscInt Nf, f; 4875af122d2aSMatthew G Knepley 4876af122d2aSMatthew G Knepley PetscFunctionBegin; 4877af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48789566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 48790f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 48800f21e855SMatthew G. Knepley PetscContainer obj; 48810f21e855SMatthew G. Knepley 48829566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 48839566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 48849566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4885af122d2aSMatthew G Knepley } 48863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4887af122d2aSMatthew G Knepley } 4888af122d2aSMatthew G Knepley 4889c1929be8SMatthew G. Knepley /*@ 4890bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4891c1929be8SMatthew G. Knepley 489220f4b53cSBarry Smith Not Collective 4893c1929be8SMatthew G. Knepley 4894c1929be8SMatthew G. Knepley Input Parameters: 4895bb7acecfSBarry Smith + dm - The `DM` 4896c1929be8SMatthew G. Knepley - f - The field number 4897c1929be8SMatthew G. Knepley 489844a7f3ddSMatthew G. Knepley Output Parameters: 489920f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 490020f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4901c1929be8SMatthew G. Knepley 490244a7f3ddSMatthew G. Knepley Level: intermediate 4903c1929be8SMatthew G. Knepley 49041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4905c1929be8SMatthew G. Knepley @*/ 4906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4907d71ae5a4SJacob Faibussowitsch { 4908af122d2aSMatthew G Knepley PetscFunctionBegin; 4909af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4910bb7acecfSBarry Smith PetscValidPointer(disc, 4); 49117a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 491244a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4913bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 49143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4915decb47aaSMatthew G. Knepley } 4916decb47aaSMatthew G. Knepley 4917083401c6SMatthew G. Knepley /* Does not clear the DS */ 4918d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4919d71ae5a4SJacob Faibussowitsch { 4920083401c6SMatthew G. Knepley PetscFunctionBegin; 49219566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49229566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49239566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4924083401c6SMatthew G. Knepley dm->fields[f].label = label; 4925bb7acecfSBarry Smith dm->fields[f].disc = disc; 49269566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4927bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 49283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4929083401c6SMatthew G. Knepley } 4930083401c6SMatthew G. Knepley 493146560f82SMatthew G. Knepley /*@C 4932bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 4933bb7acecfSBarry Smith the field numbering. 4934c1929be8SMatthew G. Knepley 493520f4b53cSBarry Smith Logically Collective 4936c1929be8SMatthew G. Knepley 4937c1929be8SMatthew G. Knepley Input Parameters: 4938bb7acecfSBarry Smith + dm - The `DM` 4939c1929be8SMatthew G. Knepley . f - The field number 494020f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 4941bb7acecfSBarry Smith - disc - The discretization object 4942c1929be8SMatthew G. Knepley 494344a7f3ddSMatthew G. Knepley Level: intermediate 4944c1929be8SMatthew G. Knepley 49451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 4946c1929be8SMatthew G. Knepley @*/ 4947d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4948d71ae5a4SJacob Faibussowitsch { 4949decb47aaSMatthew G. Knepley PetscFunctionBegin; 4950decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4951e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 4952bb7acecfSBarry Smith PetscValidHeader(disc, 4); 49537a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 4954bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 4955bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 49569566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 49573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 495844a7f3ddSMatthew G. Knepley } 495944a7f3ddSMatthew G. Knepley 496046560f82SMatthew G. Knepley /*@C 4961bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 4962bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 496344a7f3ddSMatthew G. Knepley 496420f4b53cSBarry Smith Logically Collective 496544a7f3ddSMatthew G. Knepley 496644a7f3ddSMatthew G. Knepley Input Parameters: 4967bb7acecfSBarry Smith + dm - The `DM` 496820f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 4969bb7acecfSBarry Smith - disc - The discretization object 497044a7f3ddSMatthew G. Knepley 497144a7f3ddSMatthew G. Knepley Level: intermediate 497244a7f3ddSMatthew G. Knepley 4973bb7acecfSBarry Smith Notes: 4974bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 4975bb7acecfSBarry Smith 4976da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 4977bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 4978bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 4979bb7acecfSBarry Smith 49801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 498144a7f3ddSMatthew G. Knepley @*/ 4982d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 4983d71ae5a4SJacob Faibussowitsch { 498444a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 498544a7f3ddSMatthew G. Knepley 498644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 498744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4988064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 4989bb7acecfSBarry Smith PetscValidHeader(disc, 3); 49909566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 499144a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 4992bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 49939566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4994bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 4995bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 49969566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 49973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4998af122d2aSMatthew G Knepley } 49996636e97aSMatthew G Knepley 5000e5e52638SMatthew G. Knepley /*@ 5001e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5002e0b68406SMatthew Knepley 500320f4b53cSBarry Smith Logically Collective 5004e0b68406SMatthew Knepley 5005e0b68406SMatthew Knepley Input Parameters: 5006bb7acecfSBarry Smith + dm - The `DM` 5007e0b68406SMatthew Knepley . f - The field index 5008bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5009e0b68406SMatthew Knepley 5010e0b68406SMatthew Knepley Level: intermediate 5011e0b68406SMatthew Knepley 50121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5013e0b68406SMatthew Knepley @*/ 5014d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5015d71ae5a4SJacob Faibussowitsch { 5016e0b68406SMatthew Knepley PetscFunctionBegin; 501763a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5018e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 50193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5020e0b68406SMatthew Knepley } 5021e0b68406SMatthew Knepley 5022e0b68406SMatthew Knepley /*@ 5023e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5024e0b68406SMatthew Knepley 502520f4b53cSBarry Smith Not Collective 5026e0b68406SMatthew Knepley 5027e0b68406SMatthew Knepley Input Parameters: 5028bb7acecfSBarry Smith + dm - The `DM` 5029e0b68406SMatthew Knepley - f - The field index 5030e0b68406SMatthew Knepley 5031e0b68406SMatthew Knepley Output Parameter: 5032e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5033e0b68406SMatthew Knepley 5034e0b68406SMatthew Knepley Level: intermediate 5035e0b68406SMatthew Knepley 50361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5037e0b68406SMatthew Knepley @*/ 5038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5039d71ae5a4SJacob Faibussowitsch { 5040e0b68406SMatthew Knepley PetscFunctionBegin; 504163a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5042e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 50433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5044e0b68406SMatthew Knepley } 5045e0b68406SMatthew Knepley 5046e0b68406SMatthew Knepley /*@ 5047bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5048e5e52638SMatthew G. Knepley 504920f4b53cSBarry Smith Collective 5050e5e52638SMatthew G. Knepley 5051e5e52638SMatthew G. Knepley Input Parameter: 5052bb7acecfSBarry Smith . dm - The `DM` 5053e5e52638SMatthew G. Knepley 5054e5e52638SMatthew G. Knepley Output Parameter: 5055bb7acecfSBarry Smith . newdm - The `DM` 5056e5e52638SMatthew G. Knepley 5057e5e52638SMatthew G. Knepley Level: advanced 5058e5e52638SMatthew G. Knepley 50591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5060e5e52638SMatthew G. Knepley @*/ 5061d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5062d71ae5a4SJacob Faibussowitsch { 5063e5e52638SMatthew G. Knepley PetscInt Nf, f; 5064e5e52638SMatthew G. Knepley 5065e5e52638SMatthew G. Knepley PetscFunctionBegin; 50663ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 50679566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 50689566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5069e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5070e5e52638SMatthew G. Knepley DMLabel label; 5071e5e52638SMatthew G. Knepley PetscObject field; 507234aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5073e5e52638SMatthew G. Knepley 50749566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 50759566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 50769566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 50779566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 507834aa8a36SMatthew G. Knepley } 50793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 508034aa8a36SMatthew G. Knepley } 508134aa8a36SMatthew G. Knepley 508234aa8a36SMatthew G. Knepley /*@ 508334aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 508434aa8a36SMatthew G. Knepley 508520f4b53cSBarry Smith Not Collective 508634aa8a36SMatthew G. Knepley 508734aa8a36SMatthew G. Knepley Input Parameters: 508820f4b53cSBarry Smith + dm - The `DM` object 508920f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 509034aa8a36SMatthew G. Knepley 5091d8d19677SJose E. Roman Output Parameters: 509234aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 509334aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 509434aa8a36SMatthew G. Knepley 509534aa8a36SMatthew G. Knepley Level: developer 509634aa8a36SMatthew G. Knepley 509720f4b53cSBarry Smith Notes: 509820f4b53cSBarry Smith .vb 509920f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 510020f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 510120f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 510220f4b53cSBarry Smith .ve 510320f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 510420f4b53cSBarry Smith 51051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 510634aa8a36SMatthew G. Knepley @*/ 5107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5108d71ae5a4SJacob Faibussowitsch { 510934aa8a36SMatthew G. Knepley PetscFunctionBegin; 511034aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5111534a8f05SLisandro Dalcin if (useCone) PetscValidBoolPointer(useCone, 3); 5112534a8f05SLisandro Dalcin if (useClosure) PetscValidBoolPointer(useClosure, 4); 511334aa8a36SMatthew G. Knepley if (f < 0) { 511434aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 511534aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 511634aa8a36SMatthew G. Knepley } else { 511734aa8a36SMatthew G. Knepley PetscInt Nf; 511834aa8a36SMatthew G. Knepley 51199566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51207a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 512134aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 512234aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 512334aa8a36SMatthew G. Knepley } 51243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 512534aa8a36SMatthew G. Knepley } 512634aa8a36SMatthew G. Knepley 512734aa8a36SMatthew G. Knepley /*@ 512834aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 512934aa8a36SMatthew G. Knepley 513020f4b53cSBarry Smith Not Collective 513134aa8a36SMatthew G. Knepley 513234aa8a36SMatthew G. Knepley Input Parameters: 513320f4b53cSBarry Smith + dm - The `DM` object 513434aa8a36SMatthew G. Knepley . f - The field number 513534aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 513634aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 513734aa8a36SMatthew G. Knepley 513834aa8a36SMatthew G. Knepley Level: developer 513934aa8a36SMatthew G. Knepley 514020f4b53cSBarry Smith Notes: 514120f4b53cSBarry Smith .vb 514220f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 514320f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 514420f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 514520f4b53cSBarry Smith .ve 514620f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 514720f4b53cSBarry Smith 51481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 514934aa8a36SMatthew G. Knepley @*/ 5150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5151d71ae5a4SJacob Faibussowitsch { 515234aa8a36SMatthew G. Knepley PetscFunctionBegin; 515334aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 515434aa8a36SMatthew G. Knepley if (f < 0) { 515534aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 515634aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 515734aa8a36SMatthew G. Knepley } else { 515834aa8a36SMatthew G. Knepley PetscInt Nf; 515934aa8a36SMatthew G. Knepley 51609566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51617a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 516234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 516334aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5164e5e52638SMatthew G. Knepley } 51653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5166e5e52638SMatthew G. Knepley } 5167e5e52638SMatthew G. Knepley 5168b0441da4SMatthew G. Knepley /*@ 5169b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5170b0441da4SMatthew G. Knepley 5171b0441da4SMatthew G. Knepley Not collective 5172b0441da4SMatthew G. Knepley 5173f899ff85SJose E. Roman Input Parameter: 517420f4b53cSBarry Smith . dm - The `DM` object 5175b0441da4SMatthew G. Knepley 5176d8d19677SJose E. Roman Output Parameters: 5177b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5178b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5179b0441da4SMatthew G. Knepley 5180b0441da4SMatthew G. Knepley Level: developer 5181b0441da4SMatthew G. Knepley 518220f4b53cSBarry Smith Notes: 518320f4b53cSBarry Smith .vb 518420f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 518520f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 518620f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 518720f4b53cSBarry Smith .ve 518820f4b53cSBarry Smith 51891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5190b0441da4SMatthew G. Knepley @*/ 5191d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5192d71ae5a4SJacob Faibussowitsch { 5193b0441da4SMatthew G. Knepley PetscInt Nf; 5194b0441da4SMatthew G. Knepley 5195b0441da4SMatthew G. Knepley PetscFunctionBegin; 5196b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5197064a246eSJacob Faibussowitsch if (useCone) PetscValidBoolPointer(useCone, 2); 5198064a246eSJacob Faibussowitsch if (useClosure) PetscValidBoolPointer(useClosure, 3); 51999566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5200b0441da4SMatthew G. Knepley if (!Nf) { 52019566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5202b0441da4SMatthew G. Knepley } else { 52039566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5204b0441da4SMatthew G. Knepley } 52053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5206b0441da4SMatthew G. Knepley } 5207b0441da4SMatthew G. Knepley 5208b0441da4SMatthew G. Knepley /*@ 5209b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5210b0441da4SMatthew G. Knepley 521120f4b53cSBarry Smith Not Collective 5212b0441da4SMatthew G. Knepley 5213b0441da4SMatthew G. Knepley Input Parameters: 521420f4b53cSBarry Smith + dm - The `DM` object 5215b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5216b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5217b0441da4SMatthew G. Knepley 5218b0441da4SMatthew G. Knepley Level: developer 5219b0441da4SMatthew G. Knepley 522020f4b53cSBarry Smith Notes: 522120f4b53cSBarry Smith .vb 522220f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 522320f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 522420f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 522520f4b53cSBarry Smith .ve 522620f4b53cSBarry Smith 52271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5228b0441da4SMatthew G. Knepley @*/ 5229d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5230d71ae5a4SJacob Faibussowitsch { 5231b0441da4SMatthew G. Knepley PetscInt Nf; 5232b0441da4SMatthew G. Knepley 5233b0441da4SMatthew G. Knepley PetscFunctionBegin; 5234b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52359566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5236b0441da4SMatthew G. Knepley if (!Nf) { 52379566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5238b0441da4SMatthew G. Knepley } else { 52399566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5240e5e52638SMatthew G. Knepley } 52413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5242e5e52638SMatthew G. Knepley } 5243e5e52638SMatthew G. Knepley 5244d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5245d71ae5a4SJacob Faibussowitsch { 5246799db056SMatthew G. Knepley DM plex; 5247799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5248799db056SMatthew G. Knepley const char **names; 5249799db056SMatthew G. Knepley char *sendNames, *recvNames; 5250799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5251799db056SMatthew G. Knepley size_t len; 5252799db056SMatthew G. Knepley MPI_Comm comm; 5253799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5254783e2ec8SMatthew G. Knepley 5255783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5256799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5257799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5258799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5259799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5260799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5261799db056SMatthew G. Knepley PetscDS dsBC; 5262799db056SMatthew G. Knepley PetscInt numBd; 5263799db056SMatthew G. Knepley 526407218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5265799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5266799db056SMatthew G. Knepley maxLabels += numBd; 5267799db056SMatthew G. Knepley } 5268799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5269799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5270799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5271799db056SMatthew G. Knepley PetscDS dsBC; 5272799db056SMatthew G. Knepley PetscInt numBd, bd; 5273799db056SMatthew G. Knepley 527407218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5275799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5276799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5277799db056SMatthew G. Knepley DMLabel label; 5278799db056SMatthew G. Knepley PetscInt field; 5279799db056SMatthew G. Knepley PetscObject obj; 5280799db056SMatthew G. Knepley PetscClassId id; 5281799db056SMatthew G. Knepley 5282799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 52839566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 52849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5285799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 52869371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 52879371c9d4SSatish Balay if (labels[l] == label) break; 5288799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5289783e2ec8SMatthew G. Knepley } 5290799db056SMatthew G. Knepley } 5291799db056SMatthew G. Knepley /* Get label names */ 5292799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5293799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 52949371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 52959371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 52969371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 52979371c9d4SSatish Balay } 5298799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5299712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5300799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5301c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5302799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5303799db056SMatthew G. Knepley /* Put all names on all processes */ 5304799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5305799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5306799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5307799db056SMatthew G. Knepley gNl = displs[size]; 53089371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53099371c9d4SSatish Balay counts[p] *= gmaxLen; 53109371c9d4SSatish Balay displs[p] *= gmaxLen; 53119371c9d4SSatish Balay } 5312799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5313799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5314799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5315799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5316799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5317799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5318799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53199371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53209371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 53219566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5322799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53239566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5324799db056SMatthew G. Knepley ++gl; 5325783e2ec8SMatthew G. Knepley } 5326799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 53273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5328783e2ec8SMatthew G. Knepley } 5329783e2ec8SMatthew G. Knepley 5330d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5331d71ae5a4SJacob Faibussowitsch { 5332e5e52638SMatthew G. Knepley DMSpace *tmpd; 5333e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5334e5e52638SMatthew G. Knepley 5335e5e52638SMatthew G. Knepley PetscFunctionBegin; 53363ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 53379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5338e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 53399371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 53409371c9d4SSatish Balay tmpd[s].ds = NULL; 53419371c9d4SSatish Balay tmpd[s].label = NULL; 53429371c9d4SSatish Balay tmpd[s].fields = NULL; 53439371c9d4SSatish Balay } 53449566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5345e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5346e5e52638SMatthew G. Knepley dm->probs = tmpd; 53473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5348e5e52638SMatthew G. Knepley } 5349e5e52638SMatthew G. Knepley 5350e5e52638SMatthew G. Knepley /*@ 535120f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5352e5e52638SMatthew G. Knepley 535320f4b53cSBarry Smith Not Collective 5354e5e52638SMatthew G. Knepley 5355e5e52638SMatthew G. Knepley Input Parameter: 535620f4b53cSBarry Smith . dm - The `DM` 5357e5e52638SMatthew G. Knepley 5358e5e52638SMatthew G. Knepley Output Parameter: 535920f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5360e5e52638SMatthew G. Knepley 5361e5e52638SMatthew G. Knepley Level: intermediate 5362e5e52638SMatthew G. Knepley 53631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5364e5e52638SMatthew G. Knepley @*/ 5365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5366d71ae5a4SJacob Faibussowitsch { 5367e5e52638SMatthew G. Knepley PetscFunctionBegin; 5368e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5369534a8f05SLisandro Dalcin PetscValidIntPointer(Nds, 2); 5370e5e52638SMatthew G. Knepley *Nds = dm->Nds; 53713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5372e5e52638SMatthew G. Knepley } 5373e5e52638SMatthew G. Knepley 5374e5e52638SMatthew G. Knepley /*@ 537520f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5376e5e52638SMatthew G. Knepley 537720f4b53cSBarry Smith Logically Collective 5378e5e52638SMatthew G. Knepley 5379e5e52638SMatthew G. Knepley Input Parameter: 538020f4b53cSBarry Smith . dm - The `DM` 5381e5e52638SMatthew G. Knepley 5382e5e52638SMatthew G. Knepley Level: intermediate 5383e5e52638SMatthew G. Knepley 53841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5385e5e52638SMatthew G. Knepley @*/ 5386d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5387d71ae5a4SJacob Faibussowitsch { 5388e5e52638SMatthew G. Knepley PetscInt s; 5389e5e52638SMatthew G. Knepley 5390e5e52638SMatthew G. Knepley PetscFunctionBegin; 5391e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5392e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 53939566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 539407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 53959566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 53969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5397e5e52638SMatthew G. Knepley } 53989566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5399e5e52638SMatthew G. Knepley dm->probs = NULL; 5400e5e52638SMatthew G. Knepley dm->Nds = 0; 54013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5402e5e52638SMatthew G. Knepley } 5403e5e52638SMatthew G. Knepley 5404e5e52638SMatthew G. Knepley /*@ 540520f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5406e5e52638SMatthew G. Knepley 540720f4b53cSBarry Smith Not Collective 5408e5e52638SMatthew G. Knepley 5409e5e52638SMatthew G. Knepley Input Parameter: 541020f4b53cSBarry Smith . dm - The `DM` 5411e5e52638SMatthew G. Knepley 5412e5e52638SMatthew G. Knepley Output Parameter: 541307218a29SMatthew G. Knepley . ds - The default `PetscDS` 5414e5e52638SMatthew G. Knepley 5415e5e52638SMatthew G. Knepley Level: intermediate 5416e5e52638SMatthew G. Knepley 54171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5418e5e52638SMatthew G. Knepley @*/ 541907218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5420d71ae5a4SJacob Faibussowitsch { 5421e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5422e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 542307218a29SMatthew G. Knepley PetscValidPointer(ds, 2); 542407218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 542507218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 54263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5427e5e52638SMatthew G. Knepley } 5428e5e52638SMatthew G. Knepley 5429e5e52638SMatthew G. Knepley /*@ 543020f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5431e5e52638SMatthew G. Knepley 543220f4b53cSBarry Smith Not Collective 5433e5e52638SMatthew G. Knepley 5434e5e52638SMatthew G. Knepley Input Parameters: 543520f4b53cSBarry Smith + dm - The `DM` 543620f4b53cSBarry Smith - point - Cell for the `PetscDS` 5437e5e52638SMatthew G. Knepley 543807218a29SMatthew G. Knepley Output Parameters: 543907218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 544007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5441e5e52638SMatthew G. Knepley 5442e5e52638SMatthew G. Knepley Level: developer 5443e5e52638SMatthew G. Knepley 54441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5445e5e52638SMatthew G. Knepley @*/ 544607218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5447d71ae5a4SJacob Faibussowitsch { 544807218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5449e5e52638SMatthew G. Knepley PetscInt s; 5450e5e52638SMatthew G. Knepley 5451e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5452e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 545307218a29SMatthew G. Knepley if (ds) PetscValidPointer(ds, 3); 545407218a29SMatthew G. Knepley if (dsIn) PetscValidPointer(dsIn, 4); 545563a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 545607218a29SMatthew G. Knepley if (ds) *ds = NULL; 545707218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5458e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5459e5e52638SMatthew G. Knepley PetscInt val; 5460e5e52638SMatthew G. Knepley 54619371c9d4SSatish Balay if (!dm->probs[s].label) { 546207218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 54639371c9d4SSatish Balay } else { 54649566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 54659371c9d4SSatish Balay if (val >= 0) { 546607218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 546707218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 54689371c9d4SSatish Balay break; 54699371c9d4SSatish Balay } 5470e5e52638SMatthew G. Knepley } 5471e5e52638SMatthew G. Knepley } 547207218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 54733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5474e5e52638SMatthew G. Knepley } 5475e5e52638SMatthew G. Knepley 5476e5e52638SMatthew G. Knepley /*@ 547720f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5478e5e52638SMatthew G. Knepley 547920f4b53cSBarry Smith Not Collective 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley Input Parameters: 548220f4b53cSBarry Smith + dm - The `DM` 548320f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5484e5e52638SMatthew G. Knepley 5485b3cf3223SMatthew G. Knepley Output Parameters: 548620f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 548707218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 548807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5489e5e52638SMatthew G. Knepley 5490e5e52638SMatthew G. Knepley Level: advanced 5491e5e52638SMatthew G. Knepley 549220f4b53cSBarry Smith Note: 549320f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 549420f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 549507218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 549620f4b53cSBarry Smith 54971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5498e5e52638SMatthew G. Knepley @*/ 549907218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5500d71ae5a4SJacob Faibussowitsch { 5501e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5502e5e52638SMatthew G. Knepley 5503e5e52638SMatthew G. Knepley PetscFunctionBegin; 5504e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5505e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55069371c9d4SSatish Balay if (fields) { 55079371c9d4SSatish Balay PetscValidPointer(fields, 3); 55089371c9d4SSatish Balay *fields = NULL; 55099371c9d4SSatish Balay } 55109371c9d4SSatish Balay if (ds) { 55119371c9d4SSatish Balay PetscValidPointer(ds, 4); 55129371c9d4SSatish Balay *ds = NULL; 55139371c9d4SSatish Balay } 551407218a29SMatthew G. Knepley if (dsIn) { 551507218a29SMatthew G. Knepley PetscValidPointer(dsIn, 5); 551607218a29SMatthew G. Knepley *dsIn = NULL; 551707218a29SMatthew G. Knepley } 5518e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5519154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5520b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5521b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 552207218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55233ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5524b3cf3223SMatthew G. Knepley } 5525e5e52638SMatthew G. Knepley } 55263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5527e5e52638SMatthew G. Knepley } 5528e5e52638SMatthew G. Knepley 5529e5e52638SMatthew G. Knepley /*@ 5530bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5531083401c6SMatthew G. Knepley 553220f4b53cSBarry Smith Collective 5533083401c6SMatthew G. Knepley 5534083401c6SMatthew G. Knepley Input Parameters: 5535bb7acecfSBarry Smith + dm - The `DM` 553620f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 553707218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 553807218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 553907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5540083401c6SMatthew G. Knepley 554120f4b53cSBarry Smith Level: advanced 554220f4b53cSBarry Smith 5543bb7acecfSBarry Smith Note: 5544bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5545083401c6SMatthew G. Knepley the fields argument is ignored. 5546083401c6SMatthew G. Knepley 55471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5548083401c6SMatthew G. Knepley @*/ 554907218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5550d71ae5a4SJacob Faibussowitsch { 5551083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5552083401c6SMatthew G. Knepley 5553083401c6SMatthew G. Knepley PetscFunctionBegin; 5554083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5555083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 555607218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5557064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 555807218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5559083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5560083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 55619566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 556207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5563083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 556407218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 55653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5566083401c6SMatthew G. Knepley } 5567083401c6SMatthew G. Knepley } 55689566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 55699566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 55709566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 55719566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 557207218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5573083401c6SMatthew G. Knepley if (!label) { 5574083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5575083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5576083401c6SMatthew G. Knepley Nds = 0; 5577083401c6SMatthew G. Knepley } 5578083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5579083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5580083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 558107218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 55823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5583083401c6SMatthew G. Knepley } 5584083401c6SMatthew G. Knepley 5585083401c6SMatthew G. Knepley /*@ 558620f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5587e5e52638SMatthew G. Knepley 558820f4b53cSBarry Smith Not Collective 5589e5e52638SMatthew G. Knepley 5590e5e52638SMatthew G. Knepley Input Parameters: 559120f4b53cSBarry Smith + dm - The `DM` 5592e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5593e5e52638SMatthew G. Knepley 5594e5e52638SMatthew G. Knepley Output Parameters: 559520f4b53cSBarry Smith + label - The region label, or `NULL` 559620f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 559707218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 559807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5599e5e52638SMatthew G. Knepley 5600e5e52638SMatthew G. Knepley Level: advanced 5601e5e52638SMatthew G. Knepley 56021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5603e5e52638SMatthew G. Knepley @*/ 560407218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5605d71ae5a4SJacob Faibussowitsch { 5606e5e52638SMatthew G. Knepley PetscInt Nds; 5607e5e52638SMatthew G. Knepley 5608e5e52638SMatthew G. Knepley PetscFunctionBegin; 5609e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56109566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 561163a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5612e5e52638SMatthew G. Knepley if (label) { 5613e5e52638SMatthew G. Knepley PetscValidPointer(label, 3); 5614e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5615e5e52638SMatthew G. Knepley } 5616b3cf3223SMatthew G. Knepley if (fields) { 5617b3cf3223SMatthew G. Knepley PetscValidPointer(fields, 4); 5618b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5619b3cf3223SMatthew G. Knepley } 5620e5e52638SMatthew G. Knepley if (ds) { 5621b3cf3223SMatthew G. Knepley PetscValidPointer(ds, 5); 5622e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5623e5e52638SMatthew G. Knepley } 562407218a29SMatthew G. Knepley if (dsIn) { 562507218a29SMatthew G. Knepley PetscValidPointer(dsIn, 6); 562607218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 562707218a29SMatthew G. Knepley } 56283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5629e5e52638SMatthew G. Knepley } 5630e5e52638SMatthew G. Knepley 5631e5e52638SMatthew G. Knepley /*@ 563220f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5633e5e52638SMatthew G. Knepley 563420f4b53cSBarry Smith Not Collective 5635e5e52638SMatthew G. Knepley 5636e5e52638SMatthew G. Knepley Input Parameters: 563720f4b53cSBarry Smith + dm - The `DM` 5638083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 563920f4b53cSBarry Smith . label - The region label, or `NULL` 564007218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 564107218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 564207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5643e5e52638SMatthew G. Knepley 5644e5e52638SMatthew G. Knepley Level: advanced 5645e5e52638SMatthew G. Knepley 56461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5647e5e52638SMatthew G. Knepley @*/ 564807218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5649d71ae5a4SJacob Faibussowitsch { 5650083401c6SMatthew G. Knepley PetscInt Nds; 5651e5e52638SMatthew G. Knepley 5652e5e52638SMatthew G. Knepley PetscFunctionBegin; 5653e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5654ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 56559566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 565663a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 56579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56589566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5659083401c6SMatthew G. Knepley dm->probs[num].label = label; 5660083401c6SMatthew G. Knepley if (fields) { 5661083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 56629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5664083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5665e5e52638SMatthew G. Knepley } 5666083401c6SMatthew G. Knepley if (ds) { 5667083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 56689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 56699566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5670083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5671083401c6SMatthew G. Knepley } 567207218a29SMatthew G. Knepley if (dsIn) { 567307218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 567407218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 567507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 567607218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 567707218a29SMatthew G. Knepley } 56783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5679e5e52638SMatthew G. Knepley } 5680e5e52638SMatthew G. Knepley 5681e5e52638SMatthew G. Knepley /*@ 568220f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 56831d3af9e0SMatthew G. Knepley 568420f4b53cSBarry Smith Not Collective 56851d3af9e0SMatthew G. Knepley 56861d3af9e0SMatthew G. Knepley Input Parameters: 568720f4b53cSBarry Smith + dm - The `DM` 568820f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 56891d3af9e0SMatthew G. Knepley 56901d3af9e0SMatthew G. Knepley Output Parameter: 56911d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 56921d3af9e0SMatthew G. Knepley 56931d3af9e0SMatthew G. Knepley Level: advanced 56941d3af9e0SMatthew G. Knepley 56951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 56961d3af9e0SMatthew G. Knepley @*/ 5697d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5698d71ae5a4SJacob Faibussowitsch { 56991d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57001d3af9e0SMatthew G. Knepley 57011d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57021d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57031d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 5704dadcf809SJacob Faibussowitsch PetscValidIntPointer(num, 3); 57059566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57069371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57079371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57081d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57091d3af9e0SMatthew G. Knepley else *num = n; 57103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57111d3af9e0SMatthew G. Knepley } 57121d3af9e0SMatthew G. Knepley 57132df84da0SMatthew G. Knepley /*@C 5714bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57152df84da0SMatthew G. Knepley 571620f4b53cSBarry Smith Not Collective 57172df84da0SMatthew G. Knepley 5718f1a722f8SMatthew G. Knepley Input Parameters: 5719bb7acecfSBarry Smith + dm - The `DM` 57202df84da0SMatthew G. Knepley . Nc - The number of components for the field 572120f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5722bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 57232df84da0SMatthew G. Knepley 57242df84da0SMatthew G. Knepley Output Parameter: 5725bb7acecfSBarry Smith . fem - The `PetscFE` 57262df84da0SMatthew G. Knepley 572720f4b53cSBarry Smith Level: intermediate 572820f4b53cSBarry Smith 5729bb7acecfSBarry Smith Note: 5730bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 57312df84da0SMatthew G. Knepley 57321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 57332df84da0SMatthew G. Knepley @*/ 5734d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5735d71ae5a4SJacob Faibussowitsch { 57362df84da0SMatthew G. Knepley DMPolytopeType ct; 57372df84da0SMatthew G. Knepley PetscInt dim, cStart; 57382df84da0SMatthew G. Knepley 57392df84da0SMatthew G. Knepley PetscFunctionBegin; 57402df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57412df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 57422df84da0SMatthew G. Knepley if (prefix) PetscValidCharPointer(prefix, 3); 57432df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 57442df84da0SMatthew G. Knepley PetscValidPointer(fem, 5); 57459566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 57469566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 57479566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 57489566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 57493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57502df84da0SMatthew G. Knepley } 57512df84da0SMatthew G. Knepley 57521d3af9e0SMatthew G. Knepley /*@ 5753bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5754e5e52638SMatthew G. Knepley 575520f4b53cSBarry Smith Collective 5756e5e52638SMatthew G. Knepley 5757e5e52638SMatthew G. Knepley Input Parameter: 5758bb7acecfSBarry Smith . dm - The `DM` 5759e5e52638SMatthew G. Knepley 576020f4b53cSBarry Smith Options Database Key: 5761bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 576245480ffeSMatthew G. Knepley 576320f4b53cSBarry Smith Level: intermediate 576420f4b53cSBarry Smith 57651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5766e5e52638SMatthew G. Knepley @*/ 5767d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5768d71ae5a4SJacob Faibussowitsch { 5769e5e52638SMatthew G. Knepley MPI_Comm comm; 5770083401c6SMatthew G. Knepley PetscDS dsDef; 5771083401c6SMatthew G. Knepley DMLabel *labelSet; 5772f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5773f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5774e5e52638SMatthew G. Knepley 5775e5e52638SMatthew G. Knepley PetscFunctionBegin; 5776e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57773ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 57789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 57799566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5780083401c6SMatthew G. Knepley /* Determine how many regions we have */ 57819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5782083401c6SMatthew G. Knepley Nl = 0; 5783083401c6SMatthew G. Knepley Ndef = 0; 5784083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5785083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5786083401c6SMatthew G. Knepley PetscInt l; 5787083401c6SMatthew G. Knepley 5788f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5789f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5790f918ec44SMatthew G. Knepley { 5791f918ec44SMatthew G. Knepley PetscClassId id; 5792f918ec44SMatthew G. Knepley 57939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5794f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5795f918ec44SMatthew G. Knepley Ceed ceed; 5796f918ec44SMatthew G. Knepley 57979566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 57989566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5799f918ec44SMatthew G. Knepley } 5800f918ec44SMatthew G. Knepley } 5801f918ec44SMatthew G. Knepley #endif 58029371c9d4SSatish Balay if (!label) { 58039371c9d4SSatish Balay ++Ndef; 58049371c9d4SSatish Balay continue; 58059371c9d4SSatish Balay } 58069371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58079371c9d4SSatish Balay if (label == labelSet[l]) break; 5808083401c6SMatthew G. Knepley if (l < Nl) continue; 5809083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5810083401c6SMatthew G. Knepley } 5811083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 581207218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5813083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5814b3cf3223SMatthew G. Knepley IS fields; 5815b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5816b3cf3223SMatthew G. Knepley 58179371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58189371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58197a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58219371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58229371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 58239566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58249566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58259566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58269566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 582788f0c812SMatthew G. Knepley 58289566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 582907218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 58309566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 58319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 58322df9ee95SMatthew G. Knepley } 583307218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 58349566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5835083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5836083401c6SMatthew G. Knepley if (Ndef && Nl) { 58370122748bSMatthew G. Knepley DM plex; 5838083401c6SMatthew G. Knepley DMLabel cellLabel; 5839083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5840083401c6SMatthew G. Knepley PetscInt *fields; 5841083401c6SMatthew G. Knepley const PetscInt *cells; 5842083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 58430122748bSMatthew G. Knepley 58449566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 58459566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 58469566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 58479566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 58485fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5849083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5850083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5851083401c6SMatthew G. Knepley IS pointIS; 5852083401c6SMatthew G. Knepley 58539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58549566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 58559566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 58569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5857083401c6SMatthew G. Knepley } 58589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5859083401c6SMatthew G. Knepley 58609566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 58619566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 58629566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 58639566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 58649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 58659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 58669566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5867083401c6SMatthew G. Knepley 58689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 58699371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 58709371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 58719566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 58729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 58739566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 58749566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5875083401c6SMatthew G. Knepley 58769566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 587707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 58789566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 58799566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 58809566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 58819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 58829566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5883083401c6SMatthew G. Knepley } 5884083401c6SMatthew G. Knepley /* Create label DSes 5885083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5886083401c6SMatthew G. Knepley */ 5887083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5888083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5889083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 589007218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5891083401c6SMatthew G. Knepley IS fields; 5892083401c6SMatthew G. Knepley PetscInt *fld, nf; 5893083401c6SMatthew G. Knepley 58949566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 58959371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58969371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 58979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58989371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58999371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59009566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59019566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59029566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59039566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59049566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5905083401c6SMatthew G. Knepley { 5906083401c6SMatthew G. Knepley DMPolytopeType ct; 5907083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59085fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59090122748bSMatthew G. Knepley 59109566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5911665f567fSMatthew G. Knepley if (lStart >= 0) { 59129566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5913412e9a14SMatthew G. Knepley switch (ct) { 5914412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5915412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5916412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5917d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5918d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5919d71ae5a4SJacob Faibussowitsch break; 5920d71ae5a4SJacob Faibussowitsch default: 5921d71ae5a4SJacob Faibussowitsch break; 5922412e9a14SMatthew G. Knepley } 5923665f567fSMatthew G. Knepley } 5924712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 592507218a29SMatthew G. Knepley if (isCohesive) { 592607218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 592707218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 592807218a29SMatthew G. Knepley } 59295fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 59305fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 59315fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 59329566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 59339566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 593407218a29SMatthew G. Knepley if (dsIn) { 593507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 593607218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 593707218a29SMatthew G. Knepley } 59385fedec97SMatthew G. Knepley } 59395fedec97SMatthew G. Knepley ++nf; 59405fedec97SMatthew G. Knepley } 59415fedec97SMatthew G. Knepley } 5942e5e52638SMatthew G. Knepley } 594307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 594407218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 59459566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 594607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 5947e5e52638SMatthew G. Knepley } 59489566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 5949e5e52638SMatthew G. Knepley /* Set fields in DSes */ 5950083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5951083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 595207218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 5953083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 5954083401c6SMatthew G. Knepley const PetscInt *fld; 59555fedec97SMatthew G. Knepley PetscInt nf, dsnf; 59565fedec97SMatthew G. Knepley PetscBool isCohesive; 5957e5e52638SMatthew G. Knepley 59589566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 59599566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 59609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 59619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 5962083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 5963083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 59645fedec97SMatthew G. Knepley PetscBool isCohesiveField; 5965e5e52638SMatthew G. Knepley PetscClassId id; 5966e5e52638SMatthew G. Knepley 59675fedec97SMatthew G. Knepley /* Handle DS with no fields */ 59689566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 59695fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 597007218a29SMatthew G. Knepley if (isCohesive) { 597107218a29SMatthew G. Knepley if (!isCohesiveField) { 597207218a29SMatthew G. Knepley PetscObject bdDisc; 597307218a29SMatthew G. Knepley 597407218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 597507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 597607218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 597707218a29SMatthew G. Knepley } else { 59789566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 597907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 598007218a29SMatthew G. Knepley } 598107218a29SMatthew G. Knepley } else { 598207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 598307218a29SMatthew G. Knepley } 5984083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 59859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 5986e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 5987e5e52638SMatthew G. Knepley } 59889566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 5989e5e52638SMatthew G. Knepley } 5990f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 59919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 5992f9244615SMatthew G. Knepley if (flg) { 59933b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 59943b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 599507218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 59963b4aee56SMatthew G. Knepley PetscInt Nf, f; 59973b4aee56SMatthew G. Knepley 59989566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 599907218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 600007218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 600107218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 600207218a29SMatthew G. Knepley } 60033b4aee56SMatthew G. Knepley } 6004f9244615SMatthew G. Knepley } 6005e5e52638SMatthew G. Knepley /* Setup DSes */ 6006e5e52638SMatthew G. Knepley if (doSetup) { 600707218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 600807218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 600907218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 601007218a29SMatthew G. Knepley } 6011e5e52638SMatthew G. Knepley } 60123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6013e5e52638SMatthew G. Knepley } 6014e5e52638SMatthew G. Knepley 6015e5e52638SMatthew G. Knepley /*@ 6016bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 60177f96f943SMatthew G. Knepley 601820f4b53cSBarry Smith Collective 6019f2cacb80SMatthew G. Knepley 60207f96f943SMatthew G. Knepley Input Parameters: 6021bb7acecfSBarry Smith + dm - The `DM` 60227f96f943SMatthew G. Knepley - time - The time 60237f96f943SMatthew G. Knepley 60247f96f943SMatthew G. Knepley Output Parameters: 602520f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 602620f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 602720f4b53cSBarry Smith 602820f4b53cSBarry Smith Level: developer 60297f96f943SMatthew G. Knepley 6030bb7acecfSBarry Smith Note: 6031bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 60327f96f943SMatthew G. Knepley 60331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 60347f96f943SMatthew G. Knepley @*/ 6035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6036d71ae5a4SJacob Faibussowitsch { 60377f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 60387f96f943SMatthew G. Knepley void **ectxs; 6039f60fa741SMatthew G. Knepley Vec locu, locu_t; 60407f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 60417f96f943SMatthew G. Knepley 60427f96f943SMatthew G. Knepley PetscFunctionBegin; 6043f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6044f60fa741SMatthew G. Knepley if (u) { 6045f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6046f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6047f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6048f60fa741SMatthew G. Knepley } 6049f60fa741SMatthew G. Knepley if (u_t) { 6050f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6051f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6052f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6053f60fa741SMatthew G. Knepley } 60549566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 60559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 60569566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 60577f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 60587f96f943SMatthew G. Knepley PetscDS ds; 60597f96f943SMatthew G. Knepley DMLabel label; 60607f96f943SMatthew G. Knepley IS fieldIS; 60617f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 60627f96f943SMatthew G. Knepley PetscInt dsNf, f; 60637f96f943SMatthew G. Knepley 606407218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 60659566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 60669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 60679566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6069f2cacb80SMatthew G. Knepley if (u) { 6070f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6071f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6072f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 60737f96f943SMatthew G. Knepley } 6074f2cacb80SMatthew G. Knepley if (u_t) { 60759566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 60769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6077f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6078f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6079f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6080f2cacb80SMatthew G. Knepley } 60819566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6082f2cacb80SMatthew G. Knepley } 6083f2cacb80SMatthew G. Knepley if (u) { 60849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 60859566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6086f2cacb80SMatthew G. Knepley } 6087f2cacb80SMatthew G. Knepley if (u_t) { 60889566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 60899566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6090f2cacb80SMatthew G. Knepley } 60919566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6092f60fa741SMatthew G. Knepley if (u) { 6093f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6094f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6095f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6096f60fa741SMatthew G. Knepley } 6097f60fa741SMatthew G. Knepley if (u_t) { 6098f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6099f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6100f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6101f60fa741SMatthew G. Knepley } 61023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61037f96f943SMatthew G. Knepley } 61047f96f943SMatthew G. Knepley 610507218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6106d71ae5a4SJacob Faibussowitsch { 610707218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 610845480ffeSMatthew G. Knepley 610945480ffeSMatthew G. Knepley PetscFunctionBegin; 61109566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 611107218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 611207218a29SMatthew G. Knepley if (dsIn) { 611307218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 611407218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 611545480ffeSMatthew G. Knepley } 611607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 61179566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 611807218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 61193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 612045480ffeSMatthew G. Knepley } 612145480ffeSMatthew G. Knepley 61227f96f943SMatthew G. Knepley /*@ 6123bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6124e5e52638SMatthew G. Knepley 612520f4b53cSBarry Smith Collective 6126e5e52638SMatthew G. Knepley 6127e5e52638SMatthew G. Knepley Input Parameter: 6128bb7acecfSBarry Smith . dm - The `DM` 6129e5e52638SMatthew G. Knepley 6130e5e52638SMatthew G. Knepley Output Parameter: 6131bb7acecfSBarry Smith . newdm - The `DM` 6132e5e52638SMatthew G. Knepley 6133e5e52638SMatthew G. Knepley Level: advanced 6134e5e52638SMatthew G. Knepley 61351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6136e5e52638SMatthew G. Knepley @*/ 6137d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6138d71ae5a4SJacob Faibussowitsch { 6139e5e52638SMatthew G. Knepley PetscInt Nds, s; 6140e5e52638SMatthew G. Knepley 6141e5e52638SMatthew G. Knepley PetscFunctionBegin; 61423ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 61439566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61449566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6145e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6146e5e52638SMatthew G. Knepley DMLabel label; 6147b3cf3223SMatthew G. Knepley IS fields; 614807218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6149783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6150e5e52638SMatthew G. Knepley 615107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6152b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 615307218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6154d5b43468SJose E. Roman /* Complete new labels in the new DS */ 615507218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 61569566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6157783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6158b8025e53SMatthew G. Knepley PetscWeakForm wf; 615945480ffeSMatthew G. Knepley DMLabel label; 6160783e2ec8SMatthew G. Knepley PetscInt field; 6161783e2ec8SMatthew G. Knepley 61629566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 61639566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6164783e2ec8SMatthew G. Knepley } 6165e5e52638SMatthew G. Knepley } 6166799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 61673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6168e5e52638SMatthew G. Knepley } 6169e5e52638SMatthew G. Knepley 6170e5e52638SMatthew G. Knepley /*@ 6171bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6172e5e52638SMatthew G. Knepley 617320f4b53cSBarry Smith Collective 6174e5e52638SMatthew G. Knepley 6175e5e52638SMatthew G. Knepley Input Parameter: 6176bb7acecfSBarry Smith . dm - The `DM` 6177e5e52638SMatthew G. Knepley 6178e5e52638SMatthew G. Knepley Output Parameter: 6179bb7acecfSBarry Smith . newdm - The `DM` 6180e5e52638SMatthew G. Knepley 6181e5e52638SMatthew G. Knepley Level: advanced 6182e5e52638SMatthew G. Knepley 6183bb7acecfSBarry Smith Developer Note: 6184bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6185bb7acecfSBarry Smith 61861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6187e5e52638SMatthew G. Knepley @*/ 6188d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6189d71ae5a4SJacob Faibussowitsch { 6190e5e52638SMatthew G. Knepley PetscFunctionBegin; 61919566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 61929566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 61933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6194e5e52638SMatthew G. Knepley } 6195e5e52638SMatthew G. Knepley 6196c73cfb54SMatthew G. Knepley /*@ 6197bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6198c73cfb54SMatthew G. Knepley 619920f4b53cSBarry Smith Not Collective 6200c73cfb54SMatthew G. Knepley 6201c73cfb54SMatthew G. Knepley Input Parameter: 6202bb7acecfSBarry Smith . dm - The `DM` 6203c73cfb54SMatthew G. Knepley 6204c73cfb54SMatthew G. Knepley Output Parameter: 6205c73cfb54SMatthew G. Knepley . dim - The topological dimension 6206c73cfb54SMatthew G. Knepley 6207c73cfb54SMatthew G. Knepley Level: beginner 6208c73cfb54SMatthew G. Knepley 62091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6210c73cfb54SMatthew G. Knepley @*/ 6211d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6212d71ae5a4SJacob Faibussowitsch { 6213c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6214c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6215534a8f05SLisandro Dalcin PetscValidIntPointer(dim, 2); 6216c73cfb54SMatthew G. Knepley *dim = dm->dim; 62173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6218c73cfb54SMatthew G. Knepley } 6219c73cfb54SMatthew G. Knepley 6220c73cfb54SMatthew G. Knepley /*@ 6221bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6222c73cfb54SMatthew G. Knepley 622320f4b53cSBarry Smith Collective 6224c73cfb54SMatthew G. Knepley 6225c73cfb54SMatthew G. Knepley Input Parameters: 6226bb7acecfSBarry Smith + dm - The `DM` 6227c73cfb54SMatthew G. Knepley - dim - The topological dimension 6228c73cfb54SMatthew G. Knepley 6229c73cfb54SMatthew G. Knepley Level: beginner 6230c73cfb54SMatthew G. Knepley 62311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6232c73cfb54SMatthew G. Knepley @*/ 6233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6234d71ae5a4SJacob Faibussowitsch { 6235e5e52638SMatthew G. Knepley PetscDS ds; 623645480ffeSMatthew G. Knepley PetscInt Nds, n; 6237f17e8794SMatthew G. Knepley 6238c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6239c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6240c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6241c73cfb54SMatthew G. Knepley dm->dim = dim; 6242d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 62439566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 624445480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 624507218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 62469566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 624745480ffeSMatthew G. Knepley } 6248d17bd122SMatthew G. Knepley } 62493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6250c73cfb54SMatthew G. Knepley } 6251c73cfb54SMatthew G. Knepley 6252793f3fe5SMatthew G. Knepley /*@ 6253793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6254793f3fe5SMatthew G. Knepley 625520f4b53cSBarry Smith Collective 6256793f3fe5SMatthew G. Knepley 6257793f3fe5SMatthew G. Knepley Input Parameters: 6258bb7acecfSBarry Smith + dm - the `DM` 6259793f3fe5SMatthew G. Knepley - dim - the dimension 6260793f3fe5SMatthew G. Knepley 6261793f3fe5SMatthew G. Knepley Output Parameters: 6262793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6263aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6264793f3fe5SMatthew G. Knepley 626520f4b53cSBarry Smith Level: intermediate 626620f4b53cSBarry Smith 6267793f3fe5SMatthew G. Knepley Note: 6268793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6269a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6270793f3fe5SMatthew G. Knepley then the interval is empty. 6271793f3fe5SMatthew G. Knepley 62721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6273793f3fe5SMatthew G. Knepley @*/ 6274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6275d71ae5a4SJacob Faibussowitsch { 6276793f3fe5SMatthew G. Knepley PetscInt d; 6277793f3fe5SMatthew G. Knepley 6278793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6279793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62809566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 62817a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6282dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 62833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6284793f3fe5SMatthew G. Knepley } 6285793f3fe5SMatthew G. Knepley 62866636e97aSMatthew G Knepley /*@ 6287bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6288f4d763aaSMatthew G. Knepley 628920f4b53cSBarry Smith Collective 62908f700142SStefano Zampini 6291f4d763aaSMatthew G. Knepley Input Parameter: 6292bb7acecfSBarry Smith . dm - The original `DM` 6293f4d763aaSMatthew G. Knepley 6294f4d763aaSMatthew G. Knepley Output Parameter: 6295bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6296f4d763aaSMatthew G. Knepley 6297f4d763aaSMatthew G. Knepley Level: intermediate 6298f4d763aaSMatthew G. Knepley 6299bb7acecfSBarry Smith Note: 6300bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6301bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6302bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6303bb7acecfSBarry Smith 63041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6305f4d763aaSMatthew G. Knepley @*/ 6306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6307d71ae5a4SJacob Faibussowitsch { 6308c26acbdeSMatthew G. Knepley PetscSection section; 63092d4e4a49SMatthew G. Knepley PetscBool hasConstraints, ghasConstraints; 631014f150ffSMatthew G. Knepley 631114f150ffSMatthew G. Knepley PetscFunctionBegin; 631214f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 631314f150ffSMatthew G. Knepley PetscValidPointer(odm, 2); 63149566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 63159566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6316712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 63172d4e4a49SMatthew G. Knepley if (!ghasConstraints) { 6318c26acbdeSMatthew G. Knepley *odm = dm; 63193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6320c26acbdeSMatthew G. Knepley } 632114f150ffSMatthew G. Knepley if (!dm->dmBC) { 6322c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 632314f150ffSMatthew G. Knepley PetscSF sf; 632414f150ffSMatthew G. Knepley 63259566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 63269566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 63279566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 63289566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 63299566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 63309566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 63319566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 63329566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 63339566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 633414f150ffSMatthew G. Knepley } 633514f150ffSMatthew G. Knepley *odm = dm->dmBC; 63363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 633714f150ffSMatthew G. Knepley } 6338f4d763aaSMatthew G. Knepley 6339f4d763aaSMatthew G. Knepley /*@ 6340cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6341f4d763aaSMatthew G. Knepley 6342f4d763aaSMatthew G. Knepley Input Parameter: 6343bb7acecfSBarry Smith . dm - The original `DM` 6344f4d763aaSMatthew G. Knepley 6345cdb7a50dSMatthew G. Knepley Output Parameters: 6346cdb7a50dSMatthew G. Knepley + num - The output sequence number 6347cdb7a50dSMatthew G. Knepley - val - The output sequence value 6348f4d763aaSMatthew G. Knepley 6349f4d763aaSMatthew G. Knepley Level: intermediate 6350f4d763aaSMatthew G. Knepley 6351bb7acecfSBarry Smith Note: 6352bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6353bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6354bb7acecfSBarry Smith 6355bb7acecfSBarry Smith Developer Note: 6356bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6357bb7acecfSBarry Smith not directly related to the `DM`. 6358f4d763aaSMatthew G. Knepley 63591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6360f4d763aaSMatthew G. Knepley @*/ 6361d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6362d71ae5a4SJacob Faibussowitsch { 6363f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6364f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63659371c9d4SSatish Balay if (num) { 63669371c9d4SSatish Balay PetscValidIntPointer(num, 2); 63679371c9d4SSatish Balay *num = dm->outputSequenceNum; 63689371c9d4SSatish Balay } 63699371c9d4SSatish Balay if (val) { 63709371c9d4SSatish Balay PetscValidRealPointer(val, 3); 63719371c9d4SSatish Balay *val = dm->outputSequenceVal; 63729371c9d4SSatish Balay } 63733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6374f4d763aaSMatthew G. Knepley } 6375f4d763aaSMatthew G. Knepley 6376f4d763aaSMatthew G. Knepley /*@ 6377cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6378f4d763aaSMatthew G. Knepley 6379f4d763aaSMatthew G. Knepley Input Parameters: 6380bb7acecfSBarry Smith + dm - The original `DM` 6381cdb7a50dSMatthew G. Knepley . num - The output sequence number 6382cdb7a50dSMatthew G. Knepley - val - The output sequence value 6383f4d763aaSMatthew G. Knepley 6384f4d763aaSMatthew G. Knepley Level: intermediate 6385f4d763aaSMatthew G. Knepley 6386bb7acecfSBarry Smith Note: 6387bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6388bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6389f4d763aaSMatthew G. Knepley 63901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6391f4d763aaSMatthew G. Knepley @*/ 6392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6393d71ae5a4SJacob Faibussowitsch { 6394f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6395f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6396f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6397cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 63983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6399cdb7a50dSMatthew G. Knepley } 6400cdb7a50dSMatthew G. Knepley 6401cdb7a50dSMatthew G. Knepley /*@C 6402bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6403cdb7a50dSMatthew G. Knepley 6404cdb7a50dSMatthew G. Knepley Input Parameters: 6405bb7acecfSBarry Smith + dm - The original `DM` 6406cdb7a50dSMatthew G. Knepley . name - The sequence name 6407cdb7a50dSMatthew G. Knepley - num - The output sequence number 6408cdb7a50dSMatthew G. Knepley 6409cdb7a50dSMatthew G. Knepley Output Parameter: 6410cdb7a50dSMatthew G. Knepley . val - The output sequence value 6411cdb7a50dSMatthew G. Knepley 6412cdb7a50dSMatthew G. Knepley Level: intermediate 6413cdb7a50dSMatthew G. Knepley 6414bb7acecfSBarry Smith Note: 6415bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6416bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6417bb7acecfSBarry Smith 6418bb7acecfSBarry Smith Developer Note: 6419bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6420cdb7a50dSMatthew G. Knepley 64211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6422cdb7a50dSMatthew G. Knepley @*/ 6423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6424d71ae5a4SJacob Faibussowitsch { 6425cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6426cdb7a50dSMatthew G. Knepley 6427cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6428cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6429cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6430064a246eSJacob Faibussowitsch PetscValidRealPointer(val, 5); 64319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6432cdb7a50dSMatthew G. Knepley if (ishdf5) { 6433cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6434cdb7a50dSMatthew G. Knepley PetscScalar value; 6435cdb7a50dSMatthew G. Knepley 64369566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 64374aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6438cdb7a50dSMatthew G. Knepley #endif 6439cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 64403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6441f4d763aaSMatthew G. Knepley } 64428e4ac7eaSMatthew G. Knepley 64438e4ac7eaSMatthew G. Knepley /*@ 6444bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64458e4ac7eaSMatthew G. Knepley 644620f4b53cSBarry Smith Not Collective 64478e4ac7eaSMatthew G. Knepley 64488e4ac7eaSMatthew G. Knepley Input Parameter: 6449bb7acecfSBarry Smith . dm - The `DM` 64508e4ac7eaSMatthew G. Knepley 64518e4ac7eaSMatthew G. Knepley Output Parameter: 6452bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64538e4ac7eaSMatthew G. Knepley 64548e4ac7eaSMatthew G. Knepley Level: beginner 64558e4ac7eaSMatthew G. Knepley 64561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 64578e4ac7eaSMatthew G. Knepley @*/ 6458d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6459d71ae5a4SJacob Faibussowitsch { 64608e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 64618e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6462534a8f05SLisandro Dalcin PetscValidBoolPointer(useNatural, 2); 64638e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 64643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 64658e4ac7eaSMatthew G. Knepley } 64668e4ac7eaSMatthew G. Knepley 64678e4ac7eaSMatthew G. Knepley /*@ 6468bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 64698e4ac7eaSMatthew G. Knepley 647020f4b53cSBarry Smith Collective 64718e4ac7eaSMatthew G. Knepley 64728e4ac7eaSMatthew G. Knepley Input Parameters: 6473bb7acecfSBarry Smith + dm - The `DM` 6474bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 64758e4ac7eaSMatthew G. Knepley 6476bb7acecfSBarry Smith Note: 6477bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 64785d3b26e6SMatthew G. Knepley 64798e4ac7eaSMatthew G. Knepley Level: beginner 64808e4ac7eaSMatthew G. Knepley 64811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 64828e4ac7eaSMatthew G. Knepley @*/ 6483d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6484d71ae5a4SJacob Faibussowitsch { 64858e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 64868e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64878833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 64888e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 64893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 64908e4ac7eaSMatthew G. Knepley } 6491c58f1c22SToby Isaac 6492c58f1c22SToby Isaac /*@C 6493bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6494c58f1c22SToby Isaac 6495c58f1c22SToby Isaac Not Collective 6496c58f1c22SToby Isaac 6497c58f1c22SToby Isaac Input Parameters: 6498bb7acecfSBarry Smith + dm - The `DM` object 6499c58f1c22SToby Isaac - name - The label name 6500c58f1c22SToby Isaac 6501c58f1c22SToby Isaac Level: intermediate 6502c58f1c22SToby Isaac 65031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6504c58f1c22SToby Isaac @*/ 6505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6506d71ae5a4SJacob Faibussowitsch { 65075d80c0bfSVaclav Hapla PetscBool flg; 65085d80c0bfSVaclav Hapla DMLabel label; 6509c58f1c22SToby Isaac 6510c58f1c22SToby Isaac PetscFunctionBegin; 6511c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6512c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 65139566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6514c58f1c22SToby Isaac if (!flg) { 65159566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 65169566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 65179566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6518c58f1c22SToby Isaac } 65193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6520c58f1c22SToby Isaac } 6521c58f1c22SToby Isaac 6522c58f1c22SToby Isaac /*@C 6523bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 65240fdc7489SMatthew Knepley 65250fdc7489SMatthew Knepley Not Collective 65260fdc7489SMatthew Knepley 65270fdc7489SMatthew Knepley Input Parameters: 6528bb7acecfSBarry Smith + dm - The `DM` object 65290fdc7489SMatthew Knepley . l - The index for the label 65300fdc7489SMatthew Knepley - name - The label name 65310fdc7489SMatthew Knepley 65320fdc7489SMatthew Knepley Level: intermediate 65330fdc7489SMatthew Knepley 65341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 65350fdc7489SMatthew Knepley @*/ 6536d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6537d71ae5a4SJacob Faibussowitsch { 65380fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 65390fdc7489SMatthew Knepley DMLabel label; 65400fdc7489SMatthew Knepley PetscInt Nl, m; 65410fdc7489SMatthew Knepley PetscBool flg, match; 65420fdc7489SMatthew Knepley const char *lname; 65430fdc7489SMatthew Knepley 65440fdc7489SMatthew Knepley PetscFunctionBegin; 65450fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6546064a246eSJacob Faibussowitsch PetscValidCharPointer(name, 3); 65479566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 65480fdc7489SMatthew Knepley if (!flg) { 65499566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 65509566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 65519566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 65520fdc7489SMatthew Knepley } 65539566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 655463a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 65550fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 65569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 65579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 65580fdc7489SMatthew Knepley if (match) break; 65590fdc7489SMatthew Knepley } 65603ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 65610fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 65620fdc7489SMatthew Knepley else prev->next = orig->next; 65630fdc7489SMatthew Knepley if (!l) { 65640fdc7489SMatthew Knepley orig->next = dm->labels; 65650fdc7489SMatthew Knepley dm->labels = orig; 65660fdc7489SMatthew Knepley } else { 65679371c9d4SSatish Balay for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next) 65689371c9d4SSatish Balay ; 65690fdc7489SMatthew Knepley orig->next = prev->next; 65700fdc7489SMatthew Knepley prev->next = orig; 65710fdc7489SMatthew Knepley } 65723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 65730fdc7489SMatthew Knepley } 65740fdc7489SMatthew Knepley 65750fdc7489SMatthew Knepley /*@C 6576bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6577c58f1c22SToby Isaac 6578c58f1c22SToby Isaac Not Collective 6579c58f1c22SToby Isaac 6580c58f1c22SToby Isaac Input Parameters: 6581bb7acecfSBarry Smith + dm - The `DM` object 6582c58f1c22SToby Isaac . name - The label name 6583c58f1c22SToby Isaac - point - The mesh point 6584c58f1c22SToby Isaac 6585c58f1c22SToby Isaac Output Parameter: 6586c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6587c58f1c22SToby Isaac 6588c58f1c22SToby Isaac Level: beginner 6589c58f1c22SToby Isaac 65901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6591c58f1c22SToby Isaac @*/ 6592d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6593d71ae5a4SJacob Faibussowitsch { 6594c58f1c22SToby Isaac DMLabel label; 6595c58f1c22SToby Isaac 6596c58f1c22SToby Isaac PetscFunctionBegin; 6597c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6598c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 65999566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 66007a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 66019566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 66023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6603c58f1c22SToby Isaac } 6604c58f1c22SToby Isaac 6605c58f1c22SToby Isaac /*@C 6606bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6607c58f1c22SToby Isaac 6608c58f1c22SToby Isaac Not Collective 6609c58f1c22SToby Isaac 6610c58f1c22SToby Isaac Input Parameters: 6611bb7acecfSBarry Smith + dm - The `DM` object 6612c58f1c22SToby Isaac . name - The label name 6613c58f1c22SToby Isaac . point - The mesh point 6614c58f1c22SToby Isaac - value - The label value for this point 6615c58f1c22SToby Isaac 6616c58f1c22SToby Isaac Output Parameter: 6617c58f1c22SToby Isaac 6618c58f1c22SToby Isaac Level: beginner 6619c58f1c22SToby Isaac 66201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6621c58f1c22SToby Isaac @*/ 6622d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6623d71ae5a4SJacob Faibussowitsch { 6624c58f1c22SToby Isaac DMLabel label; 6625c58f1c22SToby Isaac 6626c58f1c22SToby Isaac PetscFunctionBegin; 6627c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6628c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66299566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6630c58f1c22SToby Isaac if (!label) { 66319566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 66329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6633c58f1c22SToby Isaac } 66349566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 66353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6636c58f1c22SToby Isaac } 6637c58f1c22SToby Isaac 6638c58f1c22SToby Isaac /*@C 6639bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6640c58f1c22SToby Isaac 6641c58f1c22SToby Isaac Not Collective 6642c58f1c22SToby Isaac 6643c58f1c22SToby Isaac Input Parameters: 6644bb7acecfSBarry Smith + dm - The `DM` object 6645c58f1c22SToby Isaac . name - The label name 6646c58f1c22SToby Isaac . point - The mesh point 6647c58f1c22SToby Isaac - value - The label value for this point 6648c58f1c22SToby Isaac 6649c58f1c22SToby Isaac Level: beginner 6650c58f1c22SToby Isaac 66511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6652c58f1c22SToby Isaac @*/ 6653d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6654d71ae5a4SJacob Faibussowitsch { 6655c58f1c22SToby Isaac DMLabel label; 6656c58f1c22SToby Isaac 6657c58f1c22SToby Isaac PetscFunctionBegin; 6658c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6659c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 66609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 66613ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 66629566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 66633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6664c58f1c22SToby Isaac } 6665c58f1c22SToby Isaac 6666c58f1c22SToby Isaac /*@C 6667bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6668c58f1c22SToby Isaac 6669c58f1c22SToby Isaac Not Collective 6670c58f1c22SToby Isaac 6671c58f1c22SToby Isaac Input Parameters: 6672bb7acecfSBarry Smith + dm - The `DM` object 6673c58f1c22SToby Isaac - name - The label name 6674c58f1c22SToby Isaac 6675c58f1c22SToby Isaac Output Parameter: 6676c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6677c58f1c22SToby Isaac 6678c58f1c22SToby Isaac Level: beginner 6679c58f1c22SToby Isaac 6680bb7acecfSBarry Smith Developer Note: 6681bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6682bb7acecfSBarry Smith 66831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6684c58f1c22SToby Isaac @*/ 6685d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6686d71ae5a4SJacob Faibussowitsch { 6687c58f1c22SToby Isaac DMLabel label; 6688c58f1c22SToby Isaac 6689c58f1c22SToby Isaac PetscFunctionBegin; 6690c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6691c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6692534a8f05SLisandro Dalcin PetscValidIntPointer(size, 3); 66939566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6694c58f1c22SToby Isaac *size = 0; 66953ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 66969566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 66973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6698c58f1c22SToby Isaac } 6699c58f1c22SToby Isaac 6700c58f1c22SToby Isaac /*@C 6701bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6702c58f1c22SToby Isaac 6703c58f1c22SToby Isaac Not Collective 6704c58f1c22SToby Isaac 6705c58f1c22SToby Isaac Input Parameters: 6706bb7acecfSBarry Smith + mesh - The `DM` object 6707c58f1c22SToby Isaac - name - The label name 6708c58f1c22SToby Isaac 6709c58f1c22SToby Isaac Output Parameter: 671020f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6711c58f1c22SToby Isaac 6712c58f1c22SToby Isaac Level: beginner 6713c58f1c22SToby Isaac 67141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6715c58f1c22SToby Isaac @*/ 6716d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6717d71ae5a4SJacob Faibussowitsch { 6718c58f1c22SToby Isaac DMLabel label; 6719c58f1c22SToby Isaac 6720c58f1c22SToby Isaac PetscFunctionBegin; 6721c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6722c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6723c58f1c22SToby Isaac PetscValidPointer(ids, 3); 67249566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6725c58f1c22SToby Isaac *ids = NULL; 6726dab2e251SBlaise Bourdin if (label) { 67279566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6728dab2e251SBlaise Bourdin } else { 6729dab2e251SBlaise Bourdin /* returning an empty IS */ 67309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6731dab2e251SBlaise Bourdin } 67323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6733c58f1c22SToby Isaac } 6734c58f1c22SToby Isaac 6735c58f1c22SToby Isaac /*@C 6736c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6737c58f1c22SToby Isaac 6738c58f1c22SToby Isaac Not Collective 6739c58f1c22SToby Isaac 6740c58f1c22SToby Isaac Input Parameters: 6741bb7acecfSBarry Smith + dm - The `DM` object 6742c58f1c22SToby Isaac . name - The label name 6743c58f1c22SToby Isaac - value - The stratum value 6744c58f1c22SToby Isaac 6745c58f1c22SToby Isaac Output Parameter: 6746bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6747c58f1c22SToby Isaac 6748c58f1c22SToby Isaac Level: beginner 6749c58f1c22SToby Isaac 67501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6751c58f1c22SToby Isaac @*/ 6752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6753d71ae5a4SJacob Faibussowitsch { 6754c58f1c22SToby Isaac DMLabel label; 6755c58f1c22SToby Isaac 6756c58f1c22SToby Isaac PetscFunctionBegin; 6757c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6758c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6759534a8f05SLisandro Dalcin PetscValidIntPointer(size, 4); 67609566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6761c58f1c22SToby Isaac *size = 0; 67623ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 67639566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 67643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6765c58f1c22SToby Isaac } 6766c58f1c22SToby Isaac 6767c58f1c22SToby Isaac /*@C 6768c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6769c58f1c22SToby Isaac 6770c58f1c22SToby Isaac Not Collective 6771c58f1c22SToby Isaac 6772c58f1c22SToby Isaac Input Parameters: 6773bb7acecfSBarry Smith + dm - The `DM` object 6774c58f1c22SToby Isaac . name - The label name 6775c58f1c22SToby Isaac - value - The stratum value 6776c58f1c22SToby Isaac 6777c58f1c22SToby Isaac Output Parameter: 677820f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6779c58f1c22SToby Isaac 6780c58f1c22SToby Isaac Level: beginner 6781c58f1c22SToby Isaac 67821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6783c58f1c22SToby Isaac @*/ 6784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6785d71ae5a4SJacob Faibussowitsch { 6786c58f1c22SToby Isaac DMLabel label; 6787c58f1c22SToby Isaac 6788c58f1c22SToby Isaac PetscFunctionBegin; 6789c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6790c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6791c58f1c22SToby Isaac PetscValidPointer(points, 4); 67929566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6793c58f1c22SToby Isaac *points = NULL; 67943ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 67959566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 67963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6797c58f1c22SToby Isaac } 6798c58f1c22SToby Isaac 67994de306b1SToby Isaac /*@C 68009044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 68014de306b1SToby Isaac 68024de306b1SToby Isaac Not Collective 68034de306b1SToby Isaac 68044de306b1SToby Isaac Input Parameters: 6805bb7acecfSBarry Smith + dm - The `DM` object 68064de306b1SToby Isaac . name - The label name 68074de306b1SToby Isaac . value - The stratum value 68084de306b1SToby Isaac - points - The stratum points 68094de306b1SToby Isaac 68104de306b1SToby Isaac Level: beginner 68114de306b1SToby Isaac 68121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 68134de306b1SToby Isaac @*/ 6814d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6815d71ae5a4SJacob Faibussowitsch { 68164de306b1SToby Isaac DMLabel label; 68174de306b1SToby Isaac 68184de306b1SToby Isaac PetscFunctionBegin; 68194de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68204de306b1SToby Isaac PetscValidCharPointer(name, 2); 68214de306b1SToby Isaac PetscValidPointer(points, 4); 68229566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68233ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68249566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 68253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 68264de306b1SToby Isaac } 68274de306b1SToby Isaac 6828c58f1c22SToby Isaac /*@C 6829bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6830c58f1c22SToby Isaac 6831c58f1c22SToby Isaac Not Collective 6832c58f1c22SToby Isaac 6833c58f1c22SToby Isaac Input Parameters: 6834bb7acecfSBarry Smith + dm - The `DM` object 6835c58f1c22SToby Isaac . name - The label name 6836c58f1c22SToby Isaac - value - The label value for this point 6837c58f1c22SToby Isaac 6838c58f1c22SToby Isaac Output Parameter: 6839c58f1c22SToby Isaac 6840c58f1c22SToby Isaac Level: beginner 6841c58f1c22SToby Isaac 68421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6843c58f1c22SToby Isaac @*/ 6844d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6845d71ae5a4SJacob Faibussowitsch { 6846c58f1c22SToby Isaac DMLabel label; 6847c58f1c22SToby Isaac 6848c58f1c22SToby Isaac PetscFunctionBegin; 6849c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6850c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 68519566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68523ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68539566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 68543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6855c58f1c22SToby Isaac } 6856c58f1c22SToby Isaac 6857c58f1c22SToby Isaac /*@ 6858bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 6859c58f1c22SToby Isaac 6860c58f1c22SToby Isaac Not Collective 6861c58f1c22SToby Isaac 6862c58f1c22SToby Isaac Input Parameter: 6863bb7acecfSBarry Smith . dm - The `DM` object 6864c58f1c22SToby Isaac 6865c58f1c22SToby Isaac Output Parameter: 6866c58f1c22SToby Isaac . numLabels - the number of Labels 6867c58f1c22SToby Isaac 6868c58f1c22SToby Isaac Level: intermediate 6869c58f1c22SToby Isaac 68701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6871c58f1c22SToby Isaac @*/ 6872d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6873d71ae5a4SJacob Faibussowitsch { 68745d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6875c58f1c22SToby Isaac PetscInt n = 0; 6876c58f1c22SToby Isaac 6877c58f1c22SToby Isaac PetscFunctionBegin; 6878c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6879534a8f05SLisandro Dalcin PetscValidIntPointer(numLabels, 2); 68809371c9d4SSatish Balay while (next) { 68819371c9d4SSatish Balay ++n; 68829371c9d4SSatish Balay next = next->next; 68839371c9d4SSatish Balay } 6884c58f1c22SToby Isaac *numLabels = n; 68853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6886c58f1c22SToby Isaac } 6887c58f1c22SToby Isaac 6888c58f1c22SToby Isaac /*@C 6889c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 6890c58f1c22SToby Isaac 6891c58f1c22SToby Isaac Not Collective 6892c58f1c22SToby Isaac 6893c58f1c22SToby Isaac Input Parameters: 6894bb7acecfSBarry Smith + dm - The `DM` object 6895c58f1c22SToby Isaac - n - the label number 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac Output Parameter: 6898c58f1c22SToby Isaac . name - the label name 6899c58f1c22SToby Isaac 6900c58f1c22SToby Isaac Level: intermediate 6901c58f1c22SToby Isaac 6902bb7acecfSBarry Smith Developer Note: 6903bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 6904bb7acecfSBarry Smith 69051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6906c58f1c22SToby Isaac @*/ 6907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 6908d71ae5a4SJacob Faibussowitsch { 69095d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6910c58f1c22SToby Isaac PetscInt l = 0; 6911c58f1c22SToby Isaac 6912c58f1c22SToby Isaac PetscFunctionBegin; 6913c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6914c58f1c22SToby Isaac PetscValidPointer(name, 3); 6915c58f1c22SToby Isaac while (next) { 6916c58f1c22SToby Isaac if (l == n) { 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 69183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6919c58f1c22SToby Isaac } 6920c58f1c22SToby Isaac ++l; 6921c58f1c22SToby Isaac next = next->next; 6922c58f1c22SToby Isaac } 692363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 6924c58f1c22SToby Isaac } 6925c58f1c22SToby Isaac 6926c58f1c22SToby Isaac /*@C 6927bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 6928c58f1c22SToby Isaac 6929c58f1c22SToby Isaac Not Collective 6930c58f1c22SToby Isaac 6931c58f1c22SToby Isaac Input Parameters: 6932bb7acecfSBarry Smith + dm - The `DM` object 6933c58f1c22SToby Isaac - name - The label name 6934c58f1c22SToby Isaac 6935c58f1c22SToby Isaac Output Parameter: 6936bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 6937c58f1c22SToby Isaac 6938c58f1c22SToby Isaac Level: intermediate 6939c58f1c22SToby Isaac 69401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6941c58f1c22SToby Isaac @*/ 6942d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 6943d71ae5a4SJacob Faibussowitsch { 69445d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6945d67d17b1SMatthew G. Knepley const char *lname; 6946c58f1c22SToby Isaac 6947c58f1c22SToby Isaac PetscFunctionBegin; 6948c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6949c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6950534a8f05SLisandro Dalcin PetscValidBoolPointer(hasLabel, 3); 6951c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 6952c58f1c22SToby Isaac while (next) { 69539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 69549566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 6955c58f1c22SToby Isaac if (*hasLabel) break; 6956c58f1c22SToby Isaac next = next->next; 6957c58f1c22SToby Isaac } 69583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6959c58f1c22SToby Isaac } 6960c58f1c22SToby Isaac 6961c58f1c22SToby Isaac /*@C 696220f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 6963c58f1c22SToby Isaac 6964c58f1c22SToby Isaac Not Collective 6965c58f1c22SToby Isaac 6966c58f1c22SToby Isaac Input Parameters: 6967bb7acecfSBarry Smith + dm - The `DM` object 6968c58f1c22SToby Isaac - name - The label name 6969c58f1c22SToby Isaac 6970c58f1c22SToby Isaac Output Parameter: 697120f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 6972c58f1c22SToby Isaac 6973bb7acecfSBarry Smith Default labels in a `DMPLEX`: 6974bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 6975bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 6976bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 6977bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 6978bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 6979bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 69806d7c9049SMatthew G. Knepley 6981c58f1c22SToby Isaac Level: intermediate 6982c58f1c22SToby Isaac 69831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 6984c58f1c22SToby Isaac @*/ 6985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 6986d71ae5a4SJacob Faibussowitsch { 69875d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6988c58f1c22SToby Isaac PetscBool hasLabel; 6989d67d17b1SMatthew G. Knepley const char *lname; 6990c58f1c22SToby Isaac 6991c58f1c22SToby Isaac PetscFunctionBegin; 6992c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6993c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6994c58f1c22SToby Isaac PetscValidPointer(label, 3); 6995c58f1c22SToby Isaac *label = NULL; 6996c58f1c22SToby Isaac while (next) { 69979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 69989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 6999c58f1c22SToby Isaac if (hasLabel) { 7000c58f1c22SToby Isaac *label = next->label; 7001c58f1c22SToby Isaac break; 7002c58f1c22SToby Isaac } 7003c58f1c22SToby Isaac next = next->next; 7004c58f1c22SToby Isaac } 70053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7006c58f1c22SToby Isaac } 7007c58f1c22SToby Isaac 7008c58f1c22SToby Isaac /*@C 7009bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7010c58f1c22SToby Isaac 7011c58f1c22SToby Isaac Not Collective 7012c58f1c22SToby Isaac 7013c58f1c22SToby Isaac Input Parameters: 7014bb7acecfSBarry Smith + dm - The `DM` object 7015c58f1c22SToby Isaac - n - the label number 7016c58f1c22SToby Isaac 7017c58f1c22SToby Isaac Output Parameter: 7018c58f1c22SToby Isaac . label - the label 7019c58f1c22SToby Isaac 7020c58f1c22SToby Isaac Level: intermediate 7021c58f1c22SToby Isaac 70221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7023c58f1c22SToby Isaac @*/ 7024d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7025d71ae5a4SJacob Faibussowitsch { 70265d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7027c58f1c22SToby Isaac PetscInt l = 0; 7028c58f1c22SToby Isaac 7029c58f1c22SToby Isaac PetscFunctionBegin; 7030c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7031c58f1c22SToby Isaac PetscValidPointer(label, 3); 7032c58f1c22SToby Isaac while (next) { 7033c58f1c22SToby Isaac if (l == n) { 7034c58f1c22SToby Isaac *label = next->label; 70353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7036c58f1c22SToby Isaac } 7037c58f1c22SToby Isaac ++l; 7038c58f1c22SToby Isaac next = next->next; 7039c58f1c22SToby Isaac } 704063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7041c58f1c22SToby Isaac } 7042c58f1c22SToby Isaac 7043c58f1c22SToby Isaac /*@C 7044bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7045c58f1c22SToby Isaac 7046c58f1c22SToby Isaac Not Collective 7047c58f1c22SToby Isaac 7048c58f1c22SToby Isaac Input Parameters: 7049bb7acecfSBarry Smith + dm - The `DM` object 7050bb7acecfSBarry Smith - label - The `DMLabel` 7051c58f1c22SToby Isaac 7052c58f1c22SToby Isaac Level: developer 7053c58f1c22SToby Isaac 70541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7055c58f1c22SToby Isaac @*/ 7056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7057d71ae5a4SJacob Faibussowitsch { 70585d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7059c58f1c22SToby Isaac PetscBool hasLabel; 7060d67d17b1SMatthew G. Knepley const char *lname; 70615d80c0bfSVaclav Hapla PetscBool flg; 7062c58f1c22SToby Isaac 7063c58f1c22SToby Isaac PetscFunctionBegin; 7064c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 70669566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 70677a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 70689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7069c58f1c22SToby Isaac tmpLabel->label = label; 7070c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 70715d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 70725d80c0bfSVaclav Hapla *p = tmpLabel; 70739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 70749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 70755d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 70769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7077ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 70783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7079c58f1c22SToby Isaac } 7080c58f1c22SToby Isaac 7081c58f1c22SToby Isaac /*@C 70824a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 70834a7ee7d0SMatthew G. Knepley 70844a7ee7d0SMatthew G. Knepley Not Collective 70854a7ee7d0SMatthew G. Knepley 70864a7ee7d0SMatthew G. Knepley Input Parameters: 7087bb7acecfSBarry Smith + dm - The `DM` object 7088bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 70894a7ee7d0SMatthew G. Knepley 7090bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7091bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7092bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7093bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7094bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7095bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7096bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 70974a7ee7d0SMatthew G. Knepley 70984a7ee7d0SMatthew G. Knepley Level: intermediate 70994a7ee7d0SMatthew G. Knepley 71001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 71014a7ee7d0SMatthew G. Knepley @*/ 7102d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7103d71ae5a4SJacob Faibussowitsch { 71044a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 71054a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 71064a7ee7d0SMatthew G. Knepley const char *name, *lname; 71074a7ee7d0SMatthew G. Knepley 71084a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 71094a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71104a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 71119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 71124a7ee7d0SMatthew G. Knepley while (next) { 71139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 71154a7ee7d0SMatthew G. Knepley if (hasLabel) { 71169566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 71179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 71184a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 71199566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 71204a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 71219566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 71224a7ee7d0SMatthew G. Knepley next->label = label; 71234a7ee7d0SMatthew G. Knepley break; 71244a7ee7d0SMatthew G. Knepley } 71254a7ee7d0SMatthew G. Knepley next = next->next; 71264a7ee7d0SMatthew G. Knepley } 71273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71284a7ee7d0SMatthew G. Knepley } 71294a7ee7d0SMatthew G. Knepley 71304a7ee7d0SMatthew G. Knepley /*@C 7131bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7132c58f1c22SToby Isaac 7133c58f1c22SToby Isaac Not Collective 7134c58f1c22SToby Isaac 7135c58f1c22SToby Isaac Input Parameters: 7136bb7acecfSBarry Smith + dm - The `DM` object 7137c58f1c22SToby Isaac - name - The label name 7138c58f1c22SToby Isaac 7139c58f1c22SToby Isaac Output Parameter: 714020f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7141bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7142c58f1c22SToby Isaac 7143c58f1c22SToby Isaac Level: developer 7144c58f1c22SToby Isaac 71451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7146c58f1c22SToby Isaac @*/ 7147d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7148d71ae5a4SJacob Faibussowitsch { 714995d578d6SVaclav Hapla DMLabelLink link, *pnext; 7150c58f1c22SToby Isaac PetscBool hasLabel; 7151d67d17b1SMatthew G. Knepley const char *lname; 7152c58f1c22SToby Isaac 7153c58f1c22SToby Isaac PetscFunctionBegin; 7154c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7155e5472504SVaclav Hapla PetscValidCharPointer(name, 2); 7156e5472504SVaclav Hapla if (label) { 7157e5472504SVaclav Hapla PetscValidPointer(label, 3); 7158c58f1c22SToby Isaac *label = NULL; 7159e5472504SVaclav Hapla } 71605d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 71619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 71629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7163c58f1c22SToby Isaac if (hasLabel) { 716495d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 71659566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 716695d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 71679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7168ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 716995d578d6SVaclav Hapla if (label) *label = link->label; 71709566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 71719566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7172c58f1c22SToby Isaac break; 7173c58f1c22SToby Isaac } 7174c58f1c22SToby Isaac } 71753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7176c58f1c22SToby Isaac } 7177c58f1c22SToby Isaac 7178306894acSVaclav Hapla /*@ 7179bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7180306894acSVaclav Hapla 7181306894acSVaclav Hapla Not Collective 7182306894acSVaclav Hapla 7183306894acSVaclav Hapla Input Parameters: 7184bb7acecfSBarry Smith + dm - The `DM` object 7185bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 718620f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7187306894acSVaclav Hapla 7188306894acSVaclav Hapla Level: developer 7189306894acSVaclav Hapla 7190bb7acecfSBarry Smith Note: 7191306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7192bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7193306894acSVaclav Hapla *label nullified. 7194306894acSVaclav Hapla 71951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7196306894acSVaclav Hapla @*/ 7197d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7198d71ae5a4SJacob Faibussowitsch { 719943e45a93SVaclav Hapla DMLabelLink link, *pnext; 7200306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7201306894acSVaclav Hapla 7202306894acSVaclav Hapla PetscFunctionBegin; 7203306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7204306894acSVaclav Hapla PetscValidPointer(label, 2); 72053ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7206306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7207306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 72085d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 720943e45a93SVaclav Hapla if (*label == link->label) { 7210306894acSVaclav Hapla hasLabel = PETSC_TRUE; 721143e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7212306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7213ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 721443e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 72159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 72169566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7217306894acSVaclav Hapla break; 7218306894acSVaclav Hapla } 7219306894acSVaclav Hapla } 72207a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 72213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7222306894acSVaclav Hapla } 7223306894acSVaclav Hapla 7224c58f1c22SToby Isaac /*@C 7225c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7226c58f1c22SToby Isaac 7227c58f1c22SToby Isaac Not Collective 7228c58f1c22SToby Isaac 7229c58f1c22SToby Isaac Input Parameters: 7230bb7acecfSBarry Smith + dm - The `DM` object 7231c58f1c22SToby Isaac - name - The label name 7232c58f1c22SToby Isaac 7233c58f1c22SToby Isaac Output Parameter: 7234c58f1c22SToby Isaac . output - The flag for output 7235c58f1c22SToby Isaac 7236c58f1c22SToby Isaac Level: developer 7237c58f1c22SToby Isaac 72381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7239c58f1c22SToby Isaac @*/ 7240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7241d71ae5a4SJacob Faibussowitsch { 72425d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7243d67d17b1SMatthew G. Knepley const char *lname; 7244c58f1c22SToby Isaac 7245c58f1c22SToby Isaac PetscFunctionBegin; 7246c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7247dadcf809SJacob Faibussowitsch PetscValidCharPointer(name, 2); 7248dadcf809SJacob Faibussowitsch PetscValidBoolPointer(output, 3); 7249c58f1c22SToby Isaac while (next) { 7250c58f1c22SToby Isaac PetscBool flg; 7251c58f1c22SToby Isaac 72529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 72549371c9d4SSatish Balay if (flg) { 72559371c9d4SSatish Balay *output = next->output; 72563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72579371c9d4SSatish Balay } 7258c58f1c22SToby Isaac next = next->next; 7259c58f1c22SToby Isaac } 726098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7261c58f1c22SToby Isaac } 7262c58f1c22SToby Isaac 7263c58f1c22SToby Isaac /*@C 7264bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7265c58f1c22SToby Isaac 7266c58f1c22SToby Isaac Not Collective 7267c58f1c22SToby Isaac 7268c58f1c22SToby Isaac Input Parameters: 7269bb7acecfSBarry Smith + dm - The `DM` object 7270c58f1c22SToby Isaac . name - The label name 7271bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7272c58f1c22SToby Isaac 7273c58f1c22SToby Isaac Level: developer 7274c58f1c22SToby Isaac 72751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7276c58f1c22SToby Isaac @*/ 7277d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7278d71ae5a4SJacob Faibussowitsch { 72795d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7280d67d17b1SMatthew G. Knepley const char *lname; 7281c58f1c22SToby Isaac 7282c58f1c22SToby Isaac PetscFunctionBegin; 7283c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7284534a8f05SLisandro Dalcin PetscValidCharPointer(name, 2); 7285c58f1c22SToby Isaac while (next) { 7286c58f1c22SToby Isaac PetscBool flg; 7287c58f1c22SToby Isaac 72889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 72909371c9d4SSatish Balay if (flg) { 72919371c9d4SSatish Balay next->output = output; 72923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72939371c9d4SSatish Balay } 7294c58f1c22SToby Isaac next = next->next; 7295c58f1c22SToby Isaac } 729698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7297c58f1c22SToby Isaac } 7298c58f1c22SToby Isaac 7299c58f1c22SToby Isaac /*@ 7300bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7301c58f1c22SToby Isaac 730220f4b53cSBarry Smith Collective 7303c58f1c22SToby Isaac 7304d8d19677SJose E. Roman Input Parameters: 7305bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7306bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7307bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7308bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7309bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7310c58f1c22SToby Isaac 7311c58f1c22SToby Isaac Level: intermediate 7312c58f1c22SToby Isaac 7313bb7acecfSBarry Smith Note: 73142cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7315c58f1c22SToby Isaac 73161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7317c58f1c22SToby Isaac @*/ 7318d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7319d71ae5a4SJacob Faibussowitsch { 73202cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7321c58f1c22SToby Isaac const char *name; 7322c58f1c22SToby Isaac PetscBool flg; 73235d80c0bfSVaclav Hapla DMLabelLink link; 7324c58f1c22SToby Isaac 73255d80c0bfSVaclav Hapla PetscFunctionBegin; 73265d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 73275d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 73285d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 73295d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 73307a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 73313ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 73325d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 73335d80c0bfSVaclav Hapla label = link->label; 73349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73355d80c0bfSVaclav Hapla if (!all) { 73369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7337c58f1c22SToby Isaac if (flg) continue; 73389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 73397d5acc75SStefano Zampini if (flg) continue; 73409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7341ba2698f1SMatthew G. Knepley if (flg) continue; 73425d80c0bfSVaclav Hapla } 73439566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 73442cbb9b06SVaclav Hapla if (labelOld) { 73452cbb9b06SVaclav Hapla switch (emode) { 7346d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7347d71ae5a4SJacob Faibussowitsch continue; 7348d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7349d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7350d71ae5a4SJacob Faibussowitsch break; 7351d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7352d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7353d71ae5a4SJacob Faibussowitsch default: 7354d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 73552cbb9b06SVaclav Hapla } 73562cbb9b06SVaclav Hapla } 73575d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 73589566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 73595d80c0bfSVaclav Hapla } else { 73605d80c0bfSVaclav Hapla labelNew = label; 73615d80c0bfSVaclav Hapla } 73629566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 73639566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7364c58f1c22SToby Isaac } 73653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7366c58f1c22SToby Isaac } 7367461a15a0SLisandro Dalcin 7368609dae6eSVaclav Hapla /*@C 7369b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7370609dae6eSVaclav Hapla 737120f4b53cSBarry Smith Collective; No Fortran Support 7372609dae6eSVaclav Hapla 7373609dae6eSVaclav Hapla Input Parameters: 7374bb7acecfSBarry Smith + dm0 - First `DM` object 7375bb7acecfSBarry Smith - dm1 - Second `DM` object 7376609dae6eSVaclav Hapla 7377609dae6eSVaclav Hapla Output Parameters 73785efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 737920f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7380609dae6eSVaclav Hapla 7381609dae6eSVaclav Hapla Level: intermediate 7382609dae6eSVaclav Hapla 7383609dae6eSVaclav Hapla Notes: 7384bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7385bb7acecfSBarry Smith 738620f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7387bb7acecfSBarry Smith 738820f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7389609dae6eSVaclav Hapla 73905efe38ccSVaclav Hapla The output message is set independently on each rank. 7391bb7acecfSBarry Smith 7392bb7acecfSBarry Smith message must be freed with `PetscFree()` 7393bb7acecfSBarry Smith 739420f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7395bb7acecfSBarry Smith 739620f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7397609dae6eSVaclav Hapla 7398609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7399bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7400609dae6eSVaclav Hapla 74011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7402609dae6eSVaclav Hapla @*/ 7403d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7404d71ae5a4SJacob Faibussowitsch { 74055efe38ccSVaclav Hapla PetscInt n, i; 7406609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 74075efe38ccSVaclav Hapla PetscBool eq; 7408609dae6eSVaclav Hapla MPI_Comm comm; 74095efe38ccSVaclav Hapla PetscMPIInt rank; 7410609dae6eSVaclav Hapla 7411609dae6eSVaclav Hapla PetscFunctionBegin; 7412609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7413609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7414609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 74155efe38ccSVaclav Hapla if (equal) PetscValidBoolPointer(equal, 3); 7416609dae6eSVaclav Hapla if (message) PetscValidPointer(message, 4); 74179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 74189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 74195efe38ccSVaclav Hapla { 74205efe38ccSVaclav Hapla PetscInt n1; 74215efe38ccSVaclav Hapla 74229566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 74239566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 74245efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 742548a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7426712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 74275efe38ccSVaclav Hapla if (!eq) goto finish; 74285efe38ccSVaclav Hapla } 74295efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7430609dae6eSVaclav Hapla DMLabel l0, l1; 7431609dae6eSVaclav Hapla const char *name; 7432609dae6eSVaclav Hapla char *msgInner; 7433609dae6eSVaclav Hapla 7434609dae6eSVaclav Hapla /* Ignore label order */ 74359566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 74369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 74379566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7438609dae6eSVaclav Hapla if (!l1) { 743963a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 74405efe38ccSVaclav Hapla eq = PETSC_FALSE; 74415efe38ccSVaclav Hapla break; 7442609dae6eSVaclav Hapla } 74439566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 74449566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 74459566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 74465efe38ccSVaclav Hapla if (!eq) break; 7447609dae6eSVaclav Hapla } 7448712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7449609dae6eSVaclav Hapla finish: 74505efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7451609dae6eSVaclav Hapla if (message) { 7452609dae6eSVaclav Hapla *message = NULL; 745348a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 74545efe38ccSVaclav Hapla } else { 745548a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 74569566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 74575efe38ccSVaclav Hapla } 74585efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 74595efe38ccSVaclav Hapla if (equal) *equal = eq; 74607a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 74613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7462609dae6eSVaclav Hapla } 7463609dae6eSVaclav Hapla 7464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7465d71ae5a4SJacob Faibussowitsch { 7466461a15a0SLisandro Dalcin PetscFunctionBegin; 7467461a15a0SLisandro Dalcin PetscValidPointer(label, 2); 7468461a15a0SLisandro Dalcin if (!*label) { 74699566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 74709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7471461a15a0SLisandro Dalcin } 74729566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 74733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7474461a15a0SLisandro Dalcin } 7475461a15a0SLisandro Dalcin 74760fdc7489SMatthew Knepley /* 74770fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 74780fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 74790fdc7489SMatthew Knepley (label, id) pair in the DM. 74800fdc7489SMatthew Knepley 74810fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 74820fdc7489SMatthew Knepley each label. 74830fdc7489SMatthew Knepley */ 7484d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7485d71ae5a4SJacob Faibussowitsch { 74860fdc7489SMatthew Knepley DMUniversalLabel ul; 74870fdc7489SMatthew Knepley PetscBool *active; 74880fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 74890fdc7489SMatthew Knepley 74900fdc7489SMatthew Knepley PetscFunctionBegin; 74919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 74929566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 74939566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 74949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 74950fdc7489SMatthew Knepley ul->Nl = 0; 74960fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 74970fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 74980fdc7489SMatthew Knepley const char *name; 74990fdc7489SMatthew Knepley 75009566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 75019566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 75029566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 75030fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 75040fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 75050fdc7489SMatthew Knepley } 75069566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 75070fdc7489SMatthew Knepley ul->Nv = 0; 75080fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75090fdc7489SMatthew Knepley DMLabel label; 75100fdc7489SMatthew Knepley PetscInt nv; 75110fdc7489SMatthew Knepley const char *name; 75120fdc7489SMatthew Knepley 75130fdc7489SMatthew Knepley if (!active[l]) continue; 75149566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 75159566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75169566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75179566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 75180fdc7489SMatthew Knepley ul->indices[m] = l; 75190fdc7489SMatthew Knepley ul->Nv += nv; 75200fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 75210fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 75220fdc7489SMatthew Knepley ++m; 75230fdc7489SMatthew Knepley } 75240fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 75250fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 75260fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 75270fdc7489SMatthew Knepley } 75280fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 75290fdc7489SMatthew Knepley PetscInt b; 75300fdc7489SMatthew Knepley 75310fdc7489SMatthew Knepley ul->masks[l] = 0; 75320fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 75330fdc7489SMatthew Knepley } 75349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 75350fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75360fdc7489SMatthew Knepley DMLabel label; 75370fdc7489SMatthew Knepley IS valueIS; 75380fdc7489SMatthew Knepley const PetscInt *varr; 75390fdc7489SMatthew Knepley PetscInt nv, v; 75400fdc7489SMatthew Knepley 75410fdc7489SMatthew Knepley if (!active[l]) continue; 75429566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75439566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 75449566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 75459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7546ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 75479566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 75489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 75499566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 75500fdc7489SMatthew Knepley ++m; 75510fdc7489SMatthew Knepley } 75529566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 75530fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 75540fdc7489SMatthew Knepley PetscInt uval = 0; 75550fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 75560fdc7489SMatthew Knepley 75570fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 75580fdc7489SMatthew Knepley DMLabel label; 75590649b39aSStefano Zampini PetscInt val, defval, loc, nv; 75600fdc7489SMatthew Knepley 75610fdc7489SMatthew Knepley if (!active[l]) continue; 75629566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 75639566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 75649566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 75659371c9d4SSatish Balay if (val == defval) { 75669371c9d4SSatish Balay ++m; 75679371c9d4SSatish Balay continue; 75689371c9d4SSatish Balay } 75690649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 75700fdc7489SMatthew Knepley marked = PETSC_TRUE; 75719566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 757263a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 75730fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 75740fdc7489SMatthew Knepley ++m; 75750fdc7489SMatthew Knepley } 75769566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 75770fdc7489SMatthew Knepley } 75789566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 75790fdc7489SMatthew Knepley *universal = ul; 75803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75810fdc7489SMatthew Knepley } 75820fdc7489SMatthew Knepley 7583d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7584d71ae5a4SJacob Faibussowitsch { 75850fdc7489SMatthew Knepley PetscInt l; 75860fdc7489SMatthew Knepley 75870fdc7489SMatthew Knepley PetscFunctionBegin; 75889566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 75899566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 75909566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 75919566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 75929566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 75930fdc7489SMatthew Knepley *universal = NULL; 75943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75950fdc7489SMatthew Knepley } 75960fdc7489SMatthew Knepley 7597d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7598d71ae5a4SJacob Faibussowitsch { 75990fdc7489SMatthew Knepley PetscFunctionBegin; 76000fdc7489SMatthew Knepley PetscValidPointer(ulabel, 2); 76010fdc7489SMatthew Knepley *ulabel = ul->label; 76023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76030fdc7489SMatthew Knepley } 76040fdc7489SMatthew Knepley 7605d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7606d71ae5a4SJacob Faibussowitsch { 76070fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 76080fdc7489SMatthew Knepley 76090fdc7489SMatthew Knepley PetscFunctionBegin; 7610064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 76110fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76129566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 76139566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 76140fdc7489SMatthew Knepley } 76150fdc7489SMatthew Knepley if (preserveOrder) { 76160fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76170fdc7489SMatthew Knepley const char *name; 76180fdc7489SMatthew Knepley PetscBool match; 76190fdc7489SMatthew Knepley 76209566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 76219566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 762263a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 76230fdc7489SMatthew Knepley } 76240fdc7489SMatthew Knepley } 76253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76260fdc7489SMatthew Knepley } 76270fdc7489SMatthew Knepley 7628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7629d71ae5a4SJacob Faibussowitsch { 76300fdc7489SMatthew Knepley PetscInt l; 76310fdc7489SMatthew Knepley 76320fdc7489SMatthew Knepley PetscFunctionBegin; 76330fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76340fdc7489SMatthew Knepley DMLabel label; 76350fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 76360fdc7489SMatthew Knepley 76370fdc7489SMatthew Knepley if (lval) { 76389566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 76399566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 76409566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 76410fdc7489SMatthew Knepley } 76420fdc7489SMatthew Knepley } 76433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76440fdc7489SMatthew Knepley } 7645a8fb8f29SToby Isaac 7646a8fb8f29SToby Isaac /*@ 7647bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7648bb7acecfSBarry Smith 764920f4b53cSBarry Smith Not Collective 7650a8fb8f29SToby Isaac 7651a8fb8f29SToby Isaac Input Parameter: 7652bb7acecfSBarry Smith . dm - The `DM` object 7653a8fb8f29SToby Isaac 7654a8fb8f29SToby Isaac Output Parameter: 7655bb7acecfSBarry Smith . cdm - The coarse `DM` 7656a8fb8f29SToby Isaac 7657a8fb8f29SToby Isaac Level: intermediate 7658a8fb8f29SToby Isaac 76591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7660a8fb8f29SToby Isaac @*/ 7661d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7662d71ae5a4SJacob Faibussowitsch { 7663a8fb8f29SToby Isaac PetscFunctionBegin; 7664a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7665a8fb8f29SToby Isaac PetscValidPointer(cdm, 2); 7666a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 76673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7668a8fb8f29SToby Isaac } 7669a8fb8f29SToby Isaac 7670a8fb8f29SToby Isaac /*@ 7671bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7672a8fb8f29SToby Isaac 7673a8fb8f29SToby Isaac Input Parameters: 7674bb7acecfSBarry Smith + dm - The `DM` object 7675bb7acecfSBarry Smith - cdm - The coarse `DM` 7676a8fb8f29SToby Isaac 7677a8fb8f29SToby Isaac Level: intermediate 7678a8fb8f29SToby Isaac 7679bb7acecfSBarry Smith Note: 7680bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7681bb7acecfSBarry Smith 76821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7683a8fb8f29SToby Isaac @*/ 7684d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7685d71ae5a4SJacob Faibussowitsch { 7686a8fb8f29SToby Isaac PetscFunctionBegin; 7687a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7688a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 768989d734beSBarry Smith if (dm == cdm) cdm = NULL; 76909566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 76919566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7692a8fb8f29SToby Isaac dm->coarseMesh = cdm; 76933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7694a8fb8f29SToby Isaac } 7695a8fb8f29SToby Isaac 769688bdff64SToby Isaac /*@ 7697bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 769888bdff64SToby Isaac 769988bdff64SToby Isaac Input Parameter: 7700bb7acecfSBarry Smith . dm - The `DM` object 770188bdff64SToby Isaac 770288bdff64SToby Isaac Output Parameter: 7703bb7acecfSBarry Smith . fdm - The fine `DM` 770488bdff64SToby Isaac 770588bdff64SToby Isaac Level: intermediate 770688bdff64SToby Isaac 77071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 770888bdff64SToby Isaac @*/ 7709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7710d71ae5a4SJacob Faibussowitsch { 771188bdff64SToby Isaac PetscFunctionBegin; 771288bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 771388bdff64SToby Isaac PetscValidPointer(fdm, 2); 771488bdff64SToby Isaac *fdm = dm->fineMesh; 77153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771688bdff64SToby Isaac } 771788bdff64SToby Isaac 771888bdff64SToby Isaac /*@ 7719bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 772088bdff64SToby Isaac 772188bdff64SToby Isaac Input Parameters: 7722bb7acecfSBarry Smith + dm - The `DM` object 7723bb7acecfSBarry Smith - fdm - The fine `DM` 772488bdff64SToby Isaac 7725bb7acecfSBarry Smith Level: developer 772688bdff64SToby Isaac 7727bb7acecfSBarry Smith Note: 7728bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7729bb7acecfSBarry Smith 77301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 773188bdff64SToby Isaac @*/ 7732d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7733d71ae5a4SJacob Faibussowitsch { 773488bdff64SToby Isaac PetscFunctionBegin; 773588bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 773688bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 773789d734beSBarry Smith if (dm == fdm) fdm = NULL; 77389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 77399566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 774088bdff64SToby Isaac dm->fineMesh = fdm; 77413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 774288bdff64SToby Isaac } 774388bdff64SToby Isaac 7744a6ba4734SToby Isaac /*@C 7745bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7746a6ba4734SToby Isaac 774720f4b53cSBarry Smith Collective 7748783e2ec8SMatthew G. Knepley 7749a6ba4734SToby Isaac Input Parameters: 7750bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7751bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7752a6ba4734SToby Isaac . name - The BC name 775345480ffeSMatthew G. Knepley . label - The label defining constrained points 7754bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 775545480ffeSMatthew G. Knepley . values - An array of values for constrained points 7756a6ba4734SToby Isaac . field - The field to constrain 775745480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7758a6ba4734SToby Isaac . comps - An array of constrained component numbers 7759a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 776056cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7761a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7762a6ba4734SToby Isaac 776345480ffeSMatthew G. Knepley Output Parameter: 776445480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 776545480ffeSMatthew G. Knepley 7766a6ba4734SToby Isaac Options Database Keys: 7767a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7768a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7769a6ba4734SToby Isaac 777020f4b53cSBarry Smith Level: intermediate 777120f4b53cSBarry Smith 7772bb7acecfSBarry Smith Notes: 777337fdd005SBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 777456cf3b9cSMatthew G. Knepley 777520f4b53cSBarry Smith $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 777656cf3b9cSMatthew G. Knepley 7777bb7acecfSBarry Smith If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is: 777856cf3b9cSMatthew G. Knepley 777920f4b53cSBarry Smith .vb 778020f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 778120f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 778220f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 778320f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 778420f4b53cSBarry Smith .ve 778556cf3b9cSMatthew G. Knepley + dim - the spatial dimension 778656cf3b9cSMatthew G. Knepley . Nf - the number of fields 778756cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 778856cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 778956cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 779056cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 779156cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 779256cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 779356cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 779456cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 779556cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 779656cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 779756cf3b9cSMatthew G. Knepley . t - current time 779856cf3b9cSMatthew G. Knepley . x - coordinates of the current point 779956cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 780056cf3b9cSMatthew G. Knepley . constants - constant parameters 780156cf3b9cSMatthew G. Knepley - bcval - output values at the current point 780256cf3b9cSMatthew G. Knepley 78031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7804a6ba4734SToby Isaac @*/ 7805d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7806d71ae5a4SJacob Faibussowitsch { 7807e5e52638SMatthew G. Knepley PetscDS ds; 7808a6ba4734SToby Isaac 7809a6ba4734SToby Isaac PetscFunctionBegin; 7810a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7811783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 781245480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 781345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 781445480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 781545480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 781601a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 78179566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7818799db056SMatthew G. Knepley /* Complete label */ 7819799db056SMatthew G. Knepley if (label) { 7820799db056SMatthew G. Knepley PetscObject obj; 7821799db056SMatthew G. Knepley PetscClassId id; 7822799db056SMatthew G. Knepley 7823799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7824799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7825799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7826799db056SMatthew G. Knepley DM plex; 7827799db056SMatthew G. Knepley 7828799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7829799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7830799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7831799db056SMatthew G. Knepley } 7832799db056SMatthew G. Knepley } 78339566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 78343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7835a6ba4734SToby Isaac } 7836a6ba4734SToby Isaac 783745480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7838d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7839d71ae5a4SJacob Faibussowitsch { 7840e5e52638SMatthew G. Knepley PetscDS ds; 7841dff059c6SToby Isaac DMBoundary *lastnext; 7842e6f8dbb6SToby Isaac DSBoundary dsbound; 7843e6f8dbb6SToby Isaac 7844e6f8dbb6SToby Isaac PetscFunctionBegin; 78459566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7846e5e52638SMatthew G. Knepley dsbound = ds->boundary; 784747a1f5adSToby Isaac if (dm->boundary) { 784847a1f5adSToby Isaac DMBoundary next = dm->boundary; 784947a1f5adSToby Isaac 785047a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 78513ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 785247a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 785347a1f5adSToby Isaac while (next) { 785447a1f5adSToby Isaac DMBoundary b = next; 785547a1f5adSToby Isaac 785647a1f5adSToby Isaac next = b->next; 78579566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7858a6ba4734SToby Isaac } 785947a1f5adSToby Isaac dm->boundary = NULL; 7860a6ba4734SToby Isaac } 786147a1f5adSToby Isaac 7862dff059c6SToby Isaac lastnext = &(dm->boundary); 7863e6f8dbb6SToby Isaac while (dsbound) { 7864e6f8dbb6SToby Isaac DMBoundary dmbound; 7865e6f8dbb6SToby Isaac 78669566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7867e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 786845480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 786947a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7870dff059c6SToby Isaac *lastnext = dmbound; 7871dff059c6SToby Isaac lastnext = &(dmbound->next); 7872dff059c6SToby Isaac dsbound = dsbound->next; 7873a6ba4734SToby Isaac } 78743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7875a6ba4734SToby Isaac } 7876a6ba4734SToby Isaac 7877bb7acecfSBarry Smith /* TODO: missing manual page */ 7878d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 7879d71ae5a4SJacob Faibussowitsch { 7880b95f2879SToby Isaac DMBoundary b; 7881a6ba4734SToby Isaac 7882a6ba4734SToby Isaac PetscFunctionBegin; 7883a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7884534a8f05SLisandro Dalcin PetscValidBoolPointer(isBd, 3); 7885a6ba4734SToby Isaac *isBd = PETSC_FALSE; 78869566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 7887b95f2879SToby Isaac b = dm->boundary; 7888a6ba4734SToby Isaac while (b && !(*isBd)) { 7889e6f8dbb6SToby Isaac DMLabel label = b->label; 7890e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 7891a6ba4734SToby Isaac PetscInt i; 7892a6ba4734SToby Isaac 789345480ffeSMatthew G. Knepley if (label) { 78949566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 7895a6ba4734SToby Isaac } 7896a6ba4734SToby Isaac b = b->next; 7897a6ba4734SToby Isaac } 78983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7899a6ba4734SToby Isaac } 79004d6f44ffSToby Isaac 79014d6f44ffSToby Isaac /*@C 7902bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 7903a6e0b375SMatthew G. Knepley 790420f4b53cSBarry Smith Collective 79054d6f44ffSToby Isaac 79064d6f44ffSToby Isaac Input Parameters: 7907bb7acecfSBarry Smith + dm - The `DM` 79080709b2feSToby Isaac . time - The time 79094d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 79104d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 79114d6f44ffSToby Isaac - mode - The insertion mode for values 79124d6f44ffSToby Isaac 79134d6f44ffSToby Isaac Output Parameter: 79144d6f44ffSToby Isaac . X - vector 79154d6f44ffSToby Isaac 791620f4b53cSBarry Smith Calling sequence of `funcs`: 791720f4b53cSBarry Smith $ PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 79184d6f44ffSToby Isaac + dim - The spatial dimension 79198ec8862eSJed Brown . time - The time at which to sample 79204d6f44ffSToby Isaac . x - The coordinates 792177b739a6SMatthew Knepley . Nc - The number of components 79224d6f44ffSToby Isaac . u - The output field values 79234d6f44ffSToby Isaac - ctx - optional user-defined function context 79244d6f44ffSToby Isaac 79254d6f44ffSToby Isaac Level: developer 79264d6f44ffSToby Isaac 7927bb7acecfSBarry Smith Developer Notes: 7928bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7929bb7acecfSBarry Smith 7930bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7931bb7acecfSBarry Smith 79321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 79334d6f44ffSToby Isaac @*/ 7934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 7935d71ae5a4SJacob Faibussowitsch { 79364d6f44ffSToby Isaac Vec localX; 79374d6f44ffSToby Isaac 79384d6f44ffSToby Isaac PetscFunctionBegin; 79394d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7940708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 79419566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 7942f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 79439566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 79449566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 79459566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 79469566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 7947708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 79483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79494d6f44ffSToby Isaac } 79504d6f44ffSToby Isaac 7951a6e0b375SMatthew G. Knepley /*@C 7952bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 7953a6e0b375SMatthew G. Knepley 795420f4b53cSBarry Smith Not Collective 7955a6e0b375SMatthew G. Knepley 7956a6e0b375SMatthew G. Knepley Input Parameters: 7957bb7acecfSBarry Smith + dm - The `DM` 7958a6e0b375SMatthew G. Knepley . time - The time 7959a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7960a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7961a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7962a6e0b375SMatthew G. Knepley 7963a6e0b375SMatthew G. Knepley Output Parameter: 7964a6e0b375SMatthew G. Knepley . localX - vector 7965a6e0b375SMatthew G. Knepley 796620f4b53cSBarry Smith Calling sequence of `funcs`: 796720f4b53cSBarry Smith $ PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7968a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7969a6e0b375SMatthew G. Knepley . x - The coordinates 797077b739a6SMatthew Knepley . Nc - The number of components 7971a6e0b375SMatthew G. Knepley . u - The output field values 7972a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7973a6e0b375SMatthew G. Knepley 7974a6e0b375SMatthew G. Knepley Level: developer 7975a6e0b375SMatthew G. Knepley 7976bb7acecfSBarry Smith Developer Notes: 7977bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 7978bb7acecfSBarry Smith 7979bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 7980bb7acecfSBarry Smith 79811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 7982a6e0b375SMatthew G. Knepley @*/ 7983d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 7984d71ae5a4SJacob Faibussowitsch { 79854d6f44ffSToby Isaac PetscFunctionBegin; 79864d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7987064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 79889566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlocal)(dm, time, funcs, ctxs, mode, localX)); 79893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79904d6f44ffSToby Isaac } 79914d6f44ffSToby Isaac 7992a6e0b375SMatthew G. Knepley /*@C 7993bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 7994a6e0b375SMatthew G. Knepley 799520f4b53cSBarry Smith Collective 7996a6e0b375SMatthew G. Knepley 7997a6e0b375SMatthew G. Knepley Input Parameters: 7998bb7acecfSBarry Smith + dm - The `DM` 7999a6e0b375SMatthew G. Knepley . time - The time 8000bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8001a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8002bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8003a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8004a6e0b375SMatthew G. Knepley 8005a6e0b375SMatthew G. Knepley Output Parameter: 8006a6e0b375SMatthew G. Knepley . X - vector 8007a6e0b375SMatthew G. Knepley 800820f4b53cSBarry Smith Calling sequence of `funcs`: 800920f4b53cSBarry Smith $ PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 8010a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8011a6e0b375SMatthew G. Knepley . x - The coordinates 801277b739a6SMatthew Knepley . Nc - The number of components 8013a6e0b375SMatthew G. Knepley . u - The output field values 8014a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8015a6e0b375SMatthew G. Knepley 8016a6e0b375SMatthew G. Knepley Level: developer 8017a6e0b375SMatthew G. Knepley 8018bb7acecfSBarry Smith Developer Notes: 8019bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8020bb7acecfSBarry Smith 8021bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8022bb7acecfSBarry Smith 80231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8024a6e0b375SMatthew G. Knepley @*/ 8025d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 8026d71ae5a4SJacob Faibussowitsch { 80272c53366bSMatthew G. Knepley Vec localX; 80282c53366bSMatthew G. Knepley 80292c53366bSMatthew G. Knepley PetscFunctionBegin; 80302c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80319566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8032f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80339566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 80349566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80359566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80369566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 80373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80382c53366bSMatthew G. Knepley } 80392c53366bSMatthew G. Knepley 8040a6e0b375SMatthew G. Knepley /*@C 8041bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8042a6e0b375SMatthew G. Knepley 804320f4b53cSBarry Smith Not Collective 8044a6e0b375SMatthew G. Knepley 8045a6e0b375SMatthew G. Knepley Input Parameters: 8046bb7acecfSBarry Smith + dm - The `DM` 8047a6e0b375SMatthew G. Knepley . time - The time 8048bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8049a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8050a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8051a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8052a6e0b375SMatthew G. Knepley 8053a6e0b375SMatthew G. Knepley Output Parameter: 8054a6e0b375SMatthew G. Knepley . localX - vector 8055a6e0b375SMatthew G. Knepley 805620f4b53cSBarry Smith Calling sequence of `funcs`: 805720f4b53cSBarry Smith $ PetscErrorCode funcs(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 8058a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8059a6e0b375SMatthew G. Knepley . x - The coordinates 806077b739a6SMatthew Knepley . Nc - The number of components 8061a6e0b375SMatthew G. Knepley . u - The output field values 8062a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8063a6e0b375SMatthew G. Knepley 8064a6e0b375SMatthew G. Knepley Level: developer 8065a6e0b375SMatthew G. Knepley 8066bb7acecfSBarry Smith Developer Notes: 8067bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8068bb7acecfSBarry Smith 8069bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8070bb7acecfSBarry Smith 80711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8072a6e0b375SMatthew G. Knepley @*/ 8073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 8074d71ae5a4SJacob Faibussowitsch { 80754d6f44ffSToby Isaac PetscFunctionBegin; 80764d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8077064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 80789566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlabellocal)(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 80793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80804d6f44ffSToby Isaac } 80812716604bSToby Isaac 8082a6e0b375SMatthew G. Knepley /*@C 8083bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8084a6e0b375SMatthew G. Knepley 808520f4b53cSBarry Smith Not Collective 8086a6e0b375SMatthew G. Knepley 8087a6e0b375SMatthew G. Knepley Input Parameters: 8088bb7acecfSBarry Smith + dm - The `DM` 8089a6e0b375SMatthew G. Knepley . time - The time 809020f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8091a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8092a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8093a6e0b375SMatthew G. Knepley 8094a6e0b375SMatthew G. Knepley Output Parameter: 8095a6e0b375SMatthew G. Knepley . localX - The output vector 8096a6e0b375SMatthew G. Knepley 809720f4b53cSBarry Smith Calling sequence of `funcs`: 809820f4b53cSBarry Smith .vb 809920f4b53cSBarry Smith void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux, 810020f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 810120f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 810220f4b53cSBarry Smith PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 810320f4b53cSBarry Smith .ve 8104a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8105a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8106a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8107a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8108a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8109a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8110a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8111a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8112a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8113a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8114a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8115a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8116a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8117a6e0b375SMatthew G. Knepley . t - The current time 8118a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8119a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8120a6e0b375SMatthew G. Knepley . constants - The value of each constant 8121a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8122a6e0b375SMatthew G. Knepley 8123bb7acecfSBarry Smith Note: 8124bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8125bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8126bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8127a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8128a6e0b375SMatthew G. Knepley 8129a6e0b375SMatthew G. Knepley Level: intermediate 8130a6e0b375SMatthew G. Knepley 8131bb7acecfSBarry Smith Developer Notes: 8132bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8133bb7acecfSBarry Smith 8134bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8135bb7acecfSBarry Smith 81361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8137a6e0b375SMatthew G. Knepley @*/ 8138d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8139d71ae5a4SJacob Faibussowitsch { 81408c6c5593SMatthew G. Knepley PetscFunctionBegin; 81418c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8142eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 81438c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 81449566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlocal)(dm, time, localU, funcs, mode, localX)); 81453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81468c6c5593SMatthew G. Knepley } 81478c6c5593SMatthew G. Knepley 8148a6e0b375SMatthew G. Knepley /*@C 8149a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8150a6e0b375SMatthew G. Knepley 815120f4b53cSBarry Smith Not Collective 8152a6e0b375SMatthew G. Knepley 8153a6e0b375SMatthew G. Knepley Input Parameters: 8154bb7acecfSBarry Smith + dm - The `DM` 8155a6e0b375SMatthew G. Knepley . time - The time 8156bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8157a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8158a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8159bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 816020f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8161a6e0b375SMatthew G. Knepley . localU - The input field vector 8162a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8163a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8164a6e0b375SMatthew G. Knepley 8165a6e0b375SMatthew G. Knepley Output Parameter: 8166a6e0b375SMatthew G. Knepley . localX - The output vector 8167a6e0b375SMatthew G. Knepley 816820f4b53cSBarry Smith Calling sequence of `funcs`: 816920f4b53cSBarry Smith .vb 817020f4b53cSBarry Smith void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux, 817120f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 817220f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 817320f4b53cSBarry Smith PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 817420f4b53cSBarry Smith .ve 8175a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8176a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8177a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8178a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8179a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8180a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8181a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8182a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8183a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8184a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8185a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8186a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8187a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8188a6e0b375SMatthew G. Knepley . t - The current time 8189a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8190a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8191a6e0b375SMatthew G. Knepley . constants - The value of each constant 8192a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8193a6e0b375SMatthew G. Knepley 8194bb7acecfSBarry Smith Note: 8195bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8196bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8197bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8198a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8199a6e0b375SMatthew G. Knepley 8200a6e0b375SMatthew G. Knepley Level: intermediate 8201a6e0b375SMatthew G. Knepley 8202bb7acecfSBarry Smith Developer Notes: 8203bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8204bb7acecfSBarry Smith 8205bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8206bb7acecfSBarry Smith 82071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8208a6e0b375SMatthew G. Knepley @*/ 8209d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8210d71ae5a4SJacob Faibussowitsch { 82118c6c5593SMatthew G. Knepley PetscFunctionBegin; 82128c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8213064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8214064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 82159566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 82163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82178c6c5593SMatthew G. Knepley } 82188c6c5593SMatthew G. Knepley 82192716604bSToby Isaac /*@C 8220d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8221d29d7c6eSMatthew G. Knepley 822220f4b53cSBarry Smith Not Collective 8223d29d7c6eSMatthew G. Knepley 8224d29d7c6eSMatthew G. Knepley Input Parameters: 8225bb7acecfSBarry Smith + dm - The `DM` 8226d29d7c6eSMatthew G. Knepley . time - The time 8227bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8228d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8229d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8230bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 823120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8232d29d7c6eSMatthew G. Knepley . U - The input field vector 8233d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8234d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8235d29d7c6eSMatthew G. Knepley 8236d29d7c6eSMatthew G. Knepley Output Parameter: 8237d29d7c6eSMatthew G. Knepley . X - The output vector 8238d29d7c6eSMatthew G. Knepley 823920f4b53cSBarry Smith Calling sequence of `funcs`: 824020f4b53cSBarry Smith .vb 824120f4b53cSBarry Smith void func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 824220f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 824320f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 824420f4b53cSBarry Smith PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 824520f4b53cSBarry Smith .ve 8246d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8247d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8248d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8249d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8250d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8251d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8252d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8253d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8254d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8255d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8256d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8257d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8258d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8259d29d7c6eSMatthew G. Knepley . t - The current time 8260d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8261d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8262d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8263d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8264d29d7c6eSMatthew G. Knepley 8265bb7acecfSBarry Smith Note: 8266bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8267bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8268bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8269d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8270d29d7c6eSMatthew G. Knepley 8271d29d7c6eSMatthew G. Knepley Level: intermediate 8272d29d7c6eSMatthew G. Knepley 8273bb7acecfSBarry Smith Developer Notes: 8274bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8275bb7acecfSBarry Smith 8276bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8277bb7acecfSBarry Smith 82781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8279d29d7c6eSMatthew G. Knepley @*/ 8280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec X) 8281d71ae5a4SJacob Faibussowitsch { 8282d29d7c6eSMatthew G. Knepley DM dmIn; 8283d29d7c6eSMatthew G. Knepley Vec localU, localX; 8284d29d7c6eSMatthew G. Knepley 8285d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8286d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8287d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8288d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8289d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8290f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 829172fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 829272fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8293d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8294d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8295d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8296d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8297d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 82983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8299d29d7c6eSMatthew G. Knepley } 8300d29d7c6eSMatthew G. Knepley 8301d29d7c6eSMatthew G. Knepley /*@C 8302ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8303ece3a9fcSMatthew G. Knepley 830420f4b53cSBarry Smith Not Collective 8305ece3a9fcSMatthew G. Knepley 8306ece3a9fcSMatthew G. Knepley Input Parameters: 8307bb7acecfSBarry Smith + dm - The `DM` 8308ece3a9fcSMatthew G. Knepley . time - The time 8309bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8310ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8311ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8312bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 831320f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8314ece3a9fcSMatthew G. Knepley . localU - The input field vector 8315ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8316ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8317ece3a9fcSMatthew G. Knepley 8318ece3a9fcSMatthew G. Knepley Output Parameter: 8319ece3a9fcSMatthew G. Knepley . localX - The output vector 8320ece3a9fcSMatthew G. Knepley 832120f4b53cSBarry Smith Calling sequence of `funcs`: 832220f4b53cSBarry Smith .vb 832320f4b53cSBarry Smith void funcs(PetscInt dim, PetscInt Nf, PetscInt NfAux, 832420f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 832520f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 832620f4b53cSBarry Smith PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 832720f4b53cSBarry Smith .ve 8328ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8329ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8330ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8331ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8332ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8333ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8334ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8335ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8336ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8337ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8338ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8339ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8340ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8341ece3a9fcSMatthew G. Knepley . t - The current time 8342ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8343ece3a9fcSMatthew G. Knepley . n - The face normal 8344ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8345ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8346ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8347ece3a9fcSMatthew G. Knepley 8348ece3a9fcSMatthew G. Knepley Note: 8349bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8350bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8351bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8352ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8353ece3a9fcSMatthew G. Knepley 8354ece3a9fcSMatthew G. Knepley Level: intermediate 8355ece3a9fcSMatthew G. Knepley 8356bb7acecfSBarry Smith Developer Notes: 8357bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8358bb7acecfSBarry Smith 8359bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8360bb7acecfSBarry Smith 83611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8362ece3a9fcSMatthew G. Knepley @*/ 8363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt, PetscInt, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), InsertMode mode, Vec localX) 8364d71ae5a4SJacob Faibussowitsch { 8365ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8366ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8367064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8368064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 83699566063dSJacob Faibussowitsch PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 83703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8371ece3a9fcSMatthew G. Knepley } 8372ece3a9fcSMatthew G. Knepley 8373ece3a9fcSMatthew G. Knepley /*@C 83742716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 83752716604bSToby Isaac 837620f4b53cSBarry Smith Collective 8377bb7acecfSBarry Smith 83782716604bSToby Isaac Input Parameters: 8379bb7acecfSBarry Smith + dm - The `DM` 83800709b2feSToby Isaac . time - The time 83812716604bSToby Isaac . funcs - The functions to evaluate for each field component 83822716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8383574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 83842716604bSToby Isaac 83852716604bSToby Isaac Output Parameter: 83862716604bSToby Isaac . diff - The diff ||u - u_h||_2 83872716604bSToby Isaac 83882716604bSToby Isaac Level: developer 83892716604bSToby Isaac 8390bb7acecfSBarry Smith Developer Notes: 8391bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8392bb7acecfSBarry Smith 8393bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8394bb7acecfSBarry Smith 83951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 83962716604bSToby Isaac @*/ 8397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8398d71ae5a4SJacob Faibussowitsch { 83992716604bSToby Isaac PetscFunctionBegin; 84002716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8401b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84029566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2diff)(dm, time, funcs, ctxs, X, diff)); 84033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84042716604bSToby Isaac } 8405b698f381SToby Isaac 8406b698f381SToby Isaac /*@C 8407b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8408b698f381SToby Isaac 840920f4b53cSBarry Smith Collective 8410d083f849SBarry Smith 8411b698f381SToby Isaac Input Parameters: 8412bb7acecfSBarry Smith + dm - The `DM` 8413b698f381SToby Isaac , time - The time 8414b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8415b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8416574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8417b698f381SToby Isaac - n - The vector to project along 8418b698f381SToby Isaac 8419b698f381SToby Isaac Output Parameter: 8420b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8421b698f381SToby Isaac 8422b698f381SToby Isaac Level: developer 8423b698f381SToby Isaac 8424bb7acecfSBarry Smith Developer Notes: 8425bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8426bb7acecfSBarry Smith 8427bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8428bb7acecfSBarry Smith 84291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8430b698f381SToby Isaac @*/ 8431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8432d71ae5a4SJacob Faibussowitsch { 8433b698f381SToby Isaac PetscFunctionBegin; 8434b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8435b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84369566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2gradientdiff)(dm, time, funcs, ctxs, X, n, diff)); 84373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8438b698f381SToby Isaac } 8439b698f381SToby Isaac 84402a16baeaSToby Isaac /*@C 84412a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 84422a16baeaSToby Isaac 844320f4b53cSBarry Smith Collective 8444d083f849SBarry Smith 84452a16baeaSToby Isaac Input Parameters: 8446bb7acecfSBarry Smith + dm - The `DM` 84472a16baeaSToby Isaac . time - The time 84482a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 84492a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8450574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84512a16baeaSToby Isaac 84522a16baeaSToby Isaac Output Parameter: 84532a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 84542a16baeaSToby Isaac 84552a16baeaSToby Isaac Level: developer 84562a16baeaSToby Isaac 8457bb7acecfSBarry Smith Developer Notes: 8458bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8459bb7acecfSBarry Smith 8460bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8461bb7acecfSBarry Smith 84621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 84632a16baeaSToby Isaac @*/ 8464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8465d71ae5a4SJacob Faibussowitsch { 84662a16baeaSToby Isaac PetscFunctionBegin; 84672a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84682a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 84699566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2fielddiff)(dm, time, funcs, ctxs, X, diff)); 84703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84712a16baeaSToby Isaac } 84722a16baeaSToby Isaac 8473df0b854cSToby Isaac /*@C 8474bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8475502a2867SDave May 8476502a2867SDave May Not Collective 8477502a2867SDave May 8478502a2867SDave May Input Parameter: 8479bb7acecfSBarry Smith . dm - The `DM` 8480502a2867SDave May 84810a19bb7dSprj- Output Parameters: 84820a19bb7dSprj- + nranks - the number of neighbours 84830a19bb7dSprj- - ranks - the neighbors ranks 8484502a2867SDave May 84859bdbcad8SBarry Smith Level: beginner 84869bdbcad8SBarry Smith 8487bb7acecfSBarry Smith Note: 8488bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8489502a2867SDave May 84901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8491502a2867SDave May @*/ 8492d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8493d71ae5a4SJacob Faibussowitsch { 8494502a2867SDave May PetscFunctionBegin; 8495502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 84969566063dSJacob Faibussowitsch PetscCall((dm->ops->getneighbors)(dm, nranks, ranks)); 84973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8498502a2867SDave May } 8499502a2867SDave May 8500531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8501531c7667SBarry Smith 8502531c7667SBarry Smith /* 8503531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 85042b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8505531c7667SBarry Smith */ 8506d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8507d71ae5a4SJacob Faibussowitsch { 8508531c7667SBarry Smith PetscFunctionBegin; 8509531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8510531c7667SBarry Smith Vec x1local; 8511531c7667SBarry Smith DM dm; 85129566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 85137a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 85149566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 85159566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 85169566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8517531c7667SBarry Smith x1 = x1local; 8518531c7667SBarry Smith } 85199566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8520531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8521531c7667SBarry Smith DM dm; 85229566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 85239566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8524531c7667SBarry Smith } 85253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8526531c7667SBarry Smith } 8527531c7667SBarry Smith 8528531c7667SBarry Smith /*@ 8529bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8530531c7667SBarry Smith 8531531c7667SBarry Smith Input Parameter: 8532bb7acecfSBarry Smith . coloring - the `MatFDColoring` object 8533531c7667SBarry Smith 85349bdbcad8SBarry Smith Level: advanced 85359bdbcad8SBarry Smith 8536bb7acecfSBarry Smith Developer Note: 8537bb7acecfSBarry Smith this routine exists because the PETSc `Mat` library does not know about the `DM` objects 8538531c7667SBarry Smith 85391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8540531c7667SBarry Smith @*/ 8541d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8542d71ae5a4SJacob Faibussowitsch { 8543531c7667SBarry Smith PetscFunctionBegin; 8544531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 85453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8546531c7667SBarry Smith } 85478320bc6fSPatrick Sanan 85488320bc6fSPatrick Sanan /*@ 8549bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 85508320bc6fSPatrick Sanan 85518320bc6fSPatrick Sanan Collective 85528320bc6fSPatrick Sanan 85538320bc6fSPatrick Sanan Input Parameters: 8554bb7acecfSBarry Smith + dm1 - the first `DM` 8555bb7acecfSBarry Smith - dm2 - the second `DM` 85568320bc6fSPatrick Sanan 85578320bc6fSPatrick Sanan Output Parameters: 8558bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8559bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 85608320bc6fSPatrick Sanan 856120f4b53cSBarry Smith Level: advanced 856220f4b53cSBarry Smith 85638320bc6fSPatrick Sanan Notes: 8564bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 85653d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 85668320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8567bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 85683d862458SPatrick Sanan decomposition, but hold different data. 85698320bc6fSPatrick Sanan 85708320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8571bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 85728320bc6fSPatrick Sanan 8573bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 85748320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 85758320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8576bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 85778320bc6fSPatrick Sanan 8578bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8579bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 85808320bc6fSPatrick Sanan .vb 85818320bc6fSPatrick Sanan ... 85829566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 85838320bc6fSPatrick Sanan if (set && compatible) { 85849566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 85859566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 85869566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 85878320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 85888320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 85898320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 85908320bc6fSPatrick Sanan } 85918320bc6fSPatrick Sanan } 85929566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 85939566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 85948320bc6fSPatrick Sanan } else { 85958320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 85968320bc6fSPatrick Sanan } 85978320bc6fSPatrick Sanan ... 85988320bc6fSPatrick Sanan .ve 85998320bc6fSPatrick Sanan 8600bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 86018320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 86028320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 86038320bc6fSPatrick Sanan always check the "set" output parameter. 86048320bc6fSPatrick Sanan 8605bb7acecfSBarry Smith A `DM` is always compatible with itself. 86068320bc6fSPatrick Sanan 8607bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 86088320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 86098320bc6fSPatrick Sanan incompatible. 86108320bc6fSPatrick Sanan 86118320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8612bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 86138320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 86148320bc6fSPatrick Sanan 8615bb7acecfSBarry Smith Developer Note: 8616bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 86173d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8618a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8619bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 86208320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 86213d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8622bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 86238320bc6fSPatrick Sanan 86241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 86258320bc6fSPatrick Sanan @*/ 8626d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8627d71ae5a4SJacob Faibussowitsch { 86288320bc6fSPatrick Sanan PetscMPIInt compareResult; 86298320bc6fSPatrick Sanan DMType type, type2; 86308320bc6fSPatrick Sanan PetscBool sameType; 86318320bc6fSPatrick Sanan 86328320bc6fSPatrick Sanan PetscFunctionBegin; 8633a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 86348320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 86358320bc6fSPatrick Sanan 86368320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8637a5bc1bf3SBarry Smith if (dm1 == dm2) { 86388320bc6fSPatrick Sanan *set = PETSC_TRUE; 86398320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 86403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86418320bc6fSPatrick Sanan } 86428320bc6fSPatrick Sanan 86438320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 86448320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 86458320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 86468320bc6fSPatrick Sanan determined by the implementation-specific logic */ 86479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 86488320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 86498320bc6fSPatrick Sanan *set = PETSC_TRUE; 86508320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 86513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86528320bc6fSPatrick Sanan } 86538320bc6fSPatrick Sanan 86548320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8655a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8656dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 86573ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 86588320bc6fSPatrick Sanan } 86598320bc6fSPatrick Sanan 8660a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 86618320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 86629566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 86639566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 86649566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 86658320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8666dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 86678320bc6fSPatrick Sanan } else { 86688320bc6fSPatrick Sanan *set = PETSC_FALSE; 86698320bc6fSPatrick Sanan } 86703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86718320bc6fSPatrick Sanan } 8672c0f0dcc3SMatthew G. Knepley 8673c0f0dcc3SMatthew G. Knepley /*@C 8674bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8675c0f0dcc3SMatthew G. Knepley 867620f4b53cSBarry Smith Logically Collective 8677c0f0dcc3SMatthew G. Knepley 8678c0f0dcc3SMatthew G. Knepley Input Parameters: 8679bb7acecfSBarry Smith + DM - the `DM` 8680c0f0dcc3SMatthew G. Knepley . f - the monitor function 868120f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 868220f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8683c0f0dcc3SMatthew G. Knepley 868420f4b53cSBarry Smith Options Database Key: 8685bb7acecfSBarry Smith - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8686c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8687c0f0dcc3SMatthew G. Knepley 86889bdbcad8SBarry Smith Level: intermediate 86899bdbcad8SBarry Smith 8690bb7acecfSBarry Smith Note: 8691c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8692bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8693c0f0dcc3SMatthew G. Knepley order in which they were set. 8694c0f0dcc3SMatthew G. Knepley 8695bb7acecfSBarry Smith Fortran Note: 8696bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8697bb7acecfSBarry Smith 8698bb7acecfSBarry Smith Developer Note: 8699bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8700c0f0dcc3SMatthew G. Knepley 87011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8702c0f0dcc3SMatthew G. Knepley @*/ 8703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8704d71ae5a4SJacob Faibussowitsch { 8705c0f0dcc3SMatthew G. Knepley PetscInt m; 8706c0f0dcc3SMatthew G. Knepley 8707c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8708c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8709c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8710c0f0dcc3SMatthew G. Knepley PetscBool identical; 8711c0f0dcc3SMatthew G. Knepley 87129566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 87133ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8714c0f0dcc3SMatthew G. Knepley } 87157a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8716c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8717c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8718c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 87193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8720c0f0dcc3SMatthew G. Knepley } 8721c0f0dcc3SMatthew G. Knepley 8722c0f0dcc3SMatthew G. Knepley /*@ 8723bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8724c0f0dcc3SMatthew G. Knepley 872520f4b53cSBarry Smith Logically Collective 8726c0f0dcc3SMatthew G. Knepley 8727c0f0dcc3SMatthew G. Knepley Input Parameter: 8728c0f0dcc3SMatthew G. Knepley . dm - the DM 8729c0f0dcc3SMatthew G. Knepley 8730c0f0dcc3SMatthew G. Knepley Options Database Key: 8731c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8732bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8733c0f0dcc3SMatthew G. Knepley set via the options database 8734c0f0dcc3SMatthew G. Knepley 87359bdbcad8SBarry Smith Level: intermediate 87369bdbcad8SBarry Smith 8737bb7acecfSBarry Smith Note: 8738bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8739c0f0dcc3SMatthew G. Knepley 87401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8741c0f0dcc3SMatthew G. Knepley @*/ 8742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8743d71ae5a4SJacob Faibussowitsch { 8744c0f0dcc3SMatthew G. Knepley PetscInt m; 8745c0f0dcc3SMatthew G. Knepley 8746c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8747c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8748c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 87499566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8750c0f0dcc3SMatthew G. Knepley } 8751c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 87523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8753c0f0dcc3SMatthew G. Knepley } 8754c0f0dcc3SMatthew G. Knepley 8755c0f0dcc3SMatthew G. Knepley /*@C 8756c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8757c0f0dcc3SMatthew G. Knepley 875820f4b53cSBarry Smith Collective 8759c0f0dcc3SMatthew G. Knepley 8760c0f0dcc3SMatthew G. Knepley Input Parameters: 8761bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8762c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8763c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8764c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8765c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8766bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8767c0f0dcc3SMatthew G. Knepley 8768c0f0dcc3SMatthew G. Knepley Output Parameter: 8769c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8770c0f0dcc3SMatthew G. Knepley 8771c0f0dcc3SMatthew G. Knepley Level: developer 8772c0f0dcc3SMatthew G. Knepley 87731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8774db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 8775db781477SPatrick Sanan `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`, 8776db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8777c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8778db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8779bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8780c0f0dcc3SMatthew G. Knepley @*/ 8781d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8782d71ae5a4SJacob Faibussowitsch { 8783c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8784c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8785c0f0dcc3SMatthew G. Knepley 8786c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8787c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 87889566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8789c0f0dcc3SMatthew G. Knepley if (*flg) { 8790c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8791c0f0dcc3SMatthew G. Knepley 87929566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 87939566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)viewer)); 87949566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 87959566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8796c0f0dcc3SMatthew G. Knepley } 87973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8798c0f0dcc3SMatthew G. Knepley } 8799c0f0dcc3SMatthew G. Knepley 8800c0f0dcc3SMatthew G. Knepley /*@ 8801c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8802c0f0dcc3SMatthew G. Knepley 880320f4b53cSBarry Smith Collective 8804c0f0dcc3SMatthew G. Knepley 88052fe279fdSBarry Smith Input Parameter: 8806bb7acecfSBarry Smith . dm - The `DM` 8807c0f0dcc3SMatthew G. Knepley 8808c0f0dcc3SMatthew G. Knepley Level: developer 8809c0f0dcc3SMatthew G. Knepley 8810bb7acecfSBarry Smith Question: 8811bb7acecfSBarry Smith Note should indicate when during the life of the `DM` the monitor is run. It appears to be related to the discretization process seems rather specialized 8812bb7acecfSBarry Smith since some `DM` have no concept of discretization 8813bb7acecfSBarry Smith 88141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8815c0f0dcc3SMatthew G. Knepley @*/ 8816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8817d71ae5a4SJacob Faibussowitsch { 8818c0f0dcc3SMatthew G. Knepley PetscInt m; 8819c0f0dcc3SMatthew G. Knepley 8820c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 88213ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8822c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 882348a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 88243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8825c0f0dcc3SMatthew G. Knepley } 88262e4af2aeSMatthew G. Knepley 88272e4af2aeSMatthew G. Knepley /*@ 8828bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 88292e4af2aeSMatthew G. Knepley 883020f4b53cSBarry Smith Collective 88312e4af2aeSMatthew G. Knepley 88322e4af2aeSMatthew G. Knepley Input Parameters: 8833bb7acecfSBarry Smith + dm - The `DM` 88346b867d5aSJose E. Roman - sol - The solution vector 88352e4af2aeSMatthew G. Knepley 88366b867d5aSJose E. Roman Input/Output Parameter: 883720f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 88386b867d5aSJose E. Roman contains the error in each field 88396b867d5aSJose E. Roman 88406b867d5aSJose E. Roman Output Parameter: 884120f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 884220f4b53cSBarry Smith 884320f4b53cSBarry Smith Level: developer 88442e4af2aeSMatthew G. Knepley 8845bb7acecfSBarry Smith Note: 8846bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 88472e4af2aeSMatthew G. Knepley 88481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 88492e4af2aeSMatthew G. Knepley @*/ 8850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8851d71ae5a4SJacob Faibussowitsch { 88522e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 88532e4af2aeSMatthew G. Knepley void **ctxs; 88542e4af2aeSMatthew G. Knepley PetscReal time; 88552e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 88562e4af2aeSMatthew G. Knepley 88572e4af2aeSMatthew G. Knepley PetscFunctionBegin; 88589566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 88599566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 88609566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 88612e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 88622e4af2aeSMatthew G. Knepley PetscDS ds; 88632e4af2aeSMatthew G. Knepley DMLabel label; 88642e4af2aeSMatthew G. Knepley IS fieldIS; 88652e4af2aeSMatthew G. Knepley const PetscInt *fields; 88662e4af2aeSMatthew G. Knepley PetscInt dsNf; 88672e4af2aeSMatthew G. Knepley 886807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 88699566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 88709566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 88712e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 88722e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 88739566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 88742e4af2aeSMatthew G. Knepley } 88759566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 88762e4af2aeSMatthew G. Knepley } 8877ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 88789566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 88799566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 88802e4af2aeSMatthew G. Knepley if (errorVec) { 88812e4af2aeSMatthew G. Knepley DM edm; 88822e4af2aeSMatthew G. Knepley DMPolytopeType ct; 88832e4af2aeSMatthew G. Knepley PetscBool simplex; 88842e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 88852e4af2aeSMatthew G. Knepley 88869566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 88879566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 88889566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 88899566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 88902e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 88919566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 88922e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 88932e4af2aeSMatthew G. Knepley PetscFE fe, efe; 88942e4af2aeSMatthew G. Knepley PetscQuadrature q; 88952e4af2aeSMatthew G. Knepley const char *name; 88962e4af2aeSMatthew G. Knepley 88979566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 88989566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 88999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 89009566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 89019566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 89029566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 89039566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 89049566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 89052e4af2aeSMatthew G. Knepley } 89069566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 89072e4af2aeSMatthew G. Knepley 89089566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 89099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 89109566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 89119566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 89122e4af2aeSMatthew G. Knepley } 89139566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 89143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89152e4af2aeSMatthew G. Knepley } 89169a2a23afSMatthew G. Knepley 89179a2a23afSMatthew G. Knepley /*@ 8918bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 89199a2a23afSMatthew G. Knepley 892020f4b53cSBarry Smith Not Collective 89219a2a23afSMatthew G. Knepley 89229a2a23afSMatthew G. Knepley Input Parameter: 8923bb7acecfSBarry Smith . dm - The `DM` 89249a2a23afSMatthew G. Knepley 89259a2a23afSMatthew G. Knepley Output Parameter: 8926a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 89279a2a23afSMatthew G. Knepley 89289a2a23afSMatthew G. Knepley Level: advanced 89299a2a23afSMatthew G. Knepley 89301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 89319a2a23afSMatthew G. Knepley @*/ 8932d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 8933d71ae5a4SJacob Faibussowitsch { 89349a2a23afSMatthew G. Knepley PetscFunctionBegin; 89359a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89369566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 89373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89389a2a23afSMatthew G. Knepley } 89399a2a23afSMatthew G. Knepley 89409a2a23afSMatthew G. Knepley /*@ 8941ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 89429a2a23afSMatthew G. Knepley 894320f4b53cSBarry Smith Not Collective 89449a2a23afSMatthew G. Knepley 89459a2a23afSMatthew G. Knepley Input Parameters: 8946bb7acecfSBarry Smith + dm - The `DM` 8947bb7acecfSBarry Smith . label - The `DMLabel` 8948ac17215fSMatthew G. Knepley . value - The label value indicating the region 8949ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 89509a2a23afSMatthew G. Knepley 89519a2a23afSMatthew G. Knepley Output Parameter: 8952bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 89539a2a23afSMatthew G. Knepley 89549bdbcad8SBarry Smith Level: advanced 89559bdbcad8SBarry Smith 8956bb7acecfSBarry Smith Note: 8957bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 895804c51a94SMatthew G. Knepley 89591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 89609a2a23afSMatthew G. Knepley @*/ 8961d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 8962d71ae5a4SJacob Faibussowitsch { 8963ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 896404c51a94SMatthew G. Knepley PetscBool has; 89659a2a23afSMatthew G. Knepley 89669a2a23afSMatthew G. Knepley PetscFunctionBegin; 89679a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89689a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 89699a2a23afSMatthew G. Knepley key.label = label; 89709a2a23afSMatthew G. Knepley key.value = value; 8971ac17215fSMatthew G. Knepley key.part = part; 89729566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 89739566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 89749566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 89753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89769a2a23afSMatthew G. Knepley } 89779a2a23afSMatthew G. Knepley 89789a2a23afSMatthew G. Knepley /*@ 8979bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 89809a2a23afSMatthew G. Knepley 898120f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 89829a2a23afSMatthew G. Knepley 89839a2a23afSMatthew G. Knepley Input Parameters: 8984bb7acecfSBarry Smith + dm - The `DM` 8985bb7acecfSBarry Smith . label - The `DMLabel` 89869a2a23afSMatthew G. Knepley . value - The label value indicating the region 8987ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 8988bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 89899a2a23afSMatthew G. Knepley 89909a2a23afSMatthew G. Knepley Level: advanced 89919a2a23afSMatthew G. Knepley 89921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 89939a2a23afSMatthew G. Knepley @*/ 8994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 8995d71ae5a4SJacob Faibussowitsch { 89969a2a23afSMatthew G. Knepley Vec old; 89979a2a23afSMatthew G. Knepley PetscHashAuxKey key; 89989a2a23afSMatthew G. Knepley 89999a2a23afSMatthew G. Knepley PetscFunctionBegin; 90009a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90019a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 90029a2a23afSMatthew G. Knepley key.label = label; 90039a2a23afSMatthew G. Knepley key.value = value; 9004ac17215fSMatthew G. Knepley key.part = part; 90059566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 90069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 90079566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)old)); 90089566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 90099566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 90103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90119a2a23afSMatthew G. Knepley } 90129a2a23afSMatthew G. Knepley 90139a2a23afSMatthew G. Knepley /*@C 9014bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 90159a2a23afSMatthew G. Knepley 901620f4b53cSBarry Smith Not Collective 90179a2a23afSMatthew G. Knepley 90189a2a23afSMatthew G. Knepley Input Parameter: 9019bb7acecfSBarry Smith . dm - The `DM` 90209a2a23afSMatthew G. Knepley 90219a2a23afSMatthew G. Knepley Output Parameters: 9022bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9023bb7acecfSBarry Smith . values - The label values for each `Vec` 9024bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 90259a2a23afSMatthew G. Knepley 90269bdbcad8SBarry Smith Level: advanced 90279bdbcad8SBarry Smith 9028bb7acecfSBarry Smith Note: 9029bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 90309a2a23afSMatthew G. Knepley 90311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMSetAuxiliaryVec()`, DMCopyAuxiliaryVec()` 90329a2a23afSMatthew G. Knepley @*/ 9033d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9034d71ae5a4SJacob Faibussowitsch { 90359a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 90369a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 90379a2a23afSMatthew G. Knepley 90389a2a23afSMatthew G. Knepley PetscFunctionBegin; 90399a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90409a2a23afSMatthew G. Knepley PetscValidPointer(labels, 2); 9041dadcf809SJacob Faibussowitsch PetscValidIntPointer(values, 3); 9042dadcf809SJacob Faibussowitsch PetscValidIntPointer(parts, 4); 90439566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 90449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 90459566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 90469371c9d4SSatish Balay for (i = 0; i < n; ++i) { 90479371c9d4SSatish Balay labels[i] = keys[i].label; 90489371c9d4SSatish Balay values[i] = keys[i].value; 90499371c9d4SSatish Balay parts[i] = keys[i].part; 90509371c9d4SSatish Balay } 90519566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 90523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90539a2a23afSMatthew G. Knepley } 90549a2a23afSMatthew G. Knepley 90559a2a23afSMatthew G. Knepley /*@ 9056bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 90579a2a23afSMatthew G. Knepley 905820f4b53cSBarry Smith Not Collective 90599a2a23afSMatthew G. Knepley 90609a2a23afSMatthew G. Knepley Input Parameter: 9061bb7acecfSBarry Smith . dm - The `DM` 90629a2a23afSMatthew G. Knepley 90639a2a23afSMatthew G. Knepley Output Parameter: 9064bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 90659a2a23afSMatthew G. Knepley 90669a2a23afSMatthew G. Knepley Level: advanced 90679a2a23afSMatthew G. Knepley 9068bb7acecfSBarry Smith Note: 9069bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9070bb7acecfSBarry Smith 90711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 90729a2a23afSMatthew G. Knepley @*/ 9073d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9074d71ae5a4SJacob Faibussowitsch { 90759a2a23afSMatthew G. Knepley PetscFunctionBegin; 90769a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90779566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 90789566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 90793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90809a2a23afSMatthew G. Knepley } 9081b5a892a1SMatthew G. Knepley 9082b5a892a1SMatthew G. Knepley /*@C 9083bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9084b5a892a1SMatthew G. Knepley 908520f4b53cSBarry Smith Not Collective 9086b5a892a1SMatthew G. Knepley 9087b5a892a1SMatthew G. Knepley Input Parameters: 9088bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9089b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9090b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9091b5a892a1SMatthew G. Knepley 9092b5a892a1SMatthew G. Knepley Output Parameters: 9093bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9094b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9095b5a892a1SMatthew G. Knepley 9096b5a892a1SMatthew G. Knepley Level: advanced 9097b5a892a1SMatthew G. Knepley 9098bb7acecfSBarry Smith Note: 9099bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9100bb7acecfSBarry Smith 9101bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9102bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9103bb7acecfSBarry Smith 9104bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9105bb7acecfSBarry Smith 91061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9107b5a892a1SMatthew G. Knepley @*/ 9108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9109d71ae5a4SJacob Faibussowitsch { 9110b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 9111b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9112b5a892a1SMatthew G. Knepley PetscInt o, c; 9113b5a892a1SMatthew G. Knepley 9114b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91159371c9d4SSatish Balay if (!nO) { 91169371c9d4SSatish Balay *ornt = 0; 91179371c9d4SSatish Balay *found = PETSC_TRUE; 91183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91199371c9d4SSatish Balay } 9120b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9121b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 9122b5a892a1SMatthew G. Knepley 91239371c9d4SSatish Balay for (c = 0; c < cS; ++c) 91249371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 91259371c9d4SSatish Balay if (c == cS) { 91269371c9d4SSatish Balay *ornt = o; 91279371c9d4SSatish Balay break; 91289371c9d4SSatish Balay } 9129b5a892a1SMatthew G. Knepley } 9130b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 91313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9132b5a892a1SMatthew G. Knepley } 9133b5a892a1SMatthew G. Knepley 9134b5a892a1SMatthew G. Knepley /*@C 9135bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9136b5a892a1SMatthew G. Knepley 913720f4b53cSBarry Smith Not Collective 9138b5a892a1SMatthew G. Knepley 9139b5a892a1SMatthew G. Knepley Input Parameters: 9140bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9141b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9142b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9143b5a892a1SMatthew G. Knepley 91442fe279fdSBarry Smith Output Parameter: 9145bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9146b5a892a1SMatthew G. Knepley 9147b5a892a1SMatthew G. Knepley Level: advanced 9148b5a892a1SMatthew G. Knepley 9149bb7acecfSBarry Smith Note: 9150bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9151bb7acecfSBarry Smith 9152bb7acecfSBarry Smith Developer Note: 9153bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9154bb7acecfSBarry Smith 91551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9156b5a892a1SMatthew G. Knepley @*/ 9157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9158d71ae5a4SJacob Faibussowitsch { 9159b5a892a1SMatthew G. Knepley PetscBool found; 9160b5a892a1SMatthew G. Knepley 9161b5a892a1SMatthew G. Knepley PetscFunctionBegin; 91629566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 91637a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 91643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9165b5a892a1SMatthew G. Knepley } 9166b5a892a1SMatthew G. Knepley 9167b5a892a1SMatthew G. Knepley /*@C 9168bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9169b5a892a1SMatthew G. Knepley 917020f4b53cSBarry Smith Not Collective 9171b5a892a1SMatthew G. Knepley 9172b5a892a1SMatthew G. Knepley Input Parameters: 9173bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9174b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9175b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9176b5a892a1SMatthew G. Knepley 9177b5a892a1SMatthew G. Knepley Output Parameters: 9178bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9179b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9180b5a892a1SMatthew G. Knepley 9181b5a892a1SMatthew G. Knepley Level: advanced 9182b5a892a1SMatthew G. Knepley 9183bb7acecfSBarry Smith Note: 9184bb7acecfSBarry Smith An arrangement is a vertex order 9185bb7acecfSBarry Smith 9186bb7acecfSBarry Smith Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangments(ct)`/2 to `DMPolytopeTypeGetNumArrangments(ct)`/2 9187bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9188bb7acecfSBarry Smith 9189bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9190bb7acecfSBarry Smith 91911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangment()` 9192b5a892a1SMatthew G. Knepley @*/ 9193d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9194d71ae5a4SJacob Faibussowitsch { 9195b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 9196b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct) / 2; 9197b5a892a1SMatthew G. Knepley PetscInt o, c; 9198b5a892a1SMatthew G. Knepley 9199b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92009371c9d4SSatish Balay if (!nO) { 92019371c9d4SSatish Balay *ornt = 0; 92029371c9d4SSatish Balay *found = PETSC_TRUE; 92033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92049371c9d4SSatish Balay } 9205b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 9206b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o); 9207b5a892a1SMatthew G. Knepley 92089371c9d4SSatish Balay for (c = 0; c < cS; ++c) 92099371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 92109371c9d4SSatish Balay if (c == cS) { 92119371c9d4SSatish Balay *ornt = o; 92129371c9d4SSatish Balay break; 92139371c9d4SSatish Balay } 9214b5a892a1SMatthew G. Knepley } 9215b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 92163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9217b5a892a1SMatthew G. Knepley } 9218b5a892a1SMatthew G. Knepley 9219b5a892a1SMatthew G. Knepley /*@C 9220bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9221b5a892a1SMatthew G. Knepley 922220f4b53cSBarry Smith Not Collective 9223b5a892a1SMatthew G. Knepley 9224b5a892a1SMatthew G. Knepley Input Parameters: 9225bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9226b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9227b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9228b5a892a1SMatthew G. Knepley 92292fe279fdSBarry Smith Output Parameter: 9230bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9231b5a892a1SMatthew G. Knepley 9232b5a892a1SMatthew G. Knepley Level: advanced 9233b5a892a1SMatthew G. Knepley 9234bb7acecfSBarry Smith Note: 9235bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9236bb7acecfSBarry Smith 9237bb7acecfSBarry Smith Developer Note: 9238bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9239bb7acecfSBarry Smith 92401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9241b5a892a1SMatthew G. Knepley @*/ 9242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9243d71ae5a4SJacob Faibussowitsch { 9244b5a892a1SMatthew G. Knepley PetscBool found; 9245b5a892a1SMatthew G. Knepley 9246b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92479566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 92487a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 92493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9250b5a892a1SMatthew G. Knepley } 9251012bc364SMatthew G. Knepley 9252012bc364SMatthew G. Knepley /*@C 9253012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9254012bc364SMatthew G. Knepley 925520f4b53cSBarry Smith Not Collective 9256012bc364SMatthew G. Knepley 9257012bc364SMatthew G. Knepley Input Parameters: 9258bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9259012bc364SMatthew G. Knepley - point - Coordinates of the point 9260012bc364SMatthew G. Knepley 92612fe279fdSBarry Smith Output Parameter: 9262012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9263012bc364SMatthew G. Knepley 9264012bc364SMatthew G. Knepley Level: advanced 9265012bc364SMatthew G. Knepley 92661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9267012bc364SMatthew G. Knepley @*/ 9268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9269d71ae5a4SJacob Faibussowitsch { 9270012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9271012bc364SMatthew G. Knepley PetscInt d; 9272012bc364SMatthew G. Knepley 9273012bc364SMatthew G. Knepley PetscFunctionBegin; 9274012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9275012bc364SMatthew G. Knepley switch (ct) { 9276012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9277012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9278012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 92799371c9d4SSatish Balay if (point[d] < -1.0) { 92809371c9d4SSatish Balay *inside = PETSC_FALSE; 92819371c9d4SSatish Balay break; 92829371c9d4SSatish Balay } 9283012bc364SMatthew G. Knepley sum += point[d]; 9284012bc364SMatthew G. Knepley } 92859371c9d4SSatish Balay if (sum > PETSC_SMALL) { 92869371c9d4SSatish Balay *inside = PETSC_FALSE; 92879371c9d4SSatish Balay break; 92889371c9d4SSatish Balay } 9289012bc364SMatthew G. Knepley break; 9290012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9291012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9292012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 92939371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 92949371c9d4SSatish Balay *inside = PETSC_FALSE; 9295012bc364SMatthew G. Knepley break; 92969371c9d4SSatish Balay } 92979371c9d4SSatish Balay break; 9298d71ae5a4SJacob Faibussowitsch default: 9299d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9300012bc364SMatthew G. Knepley } 93013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9302012bc364SMatthew G. Knepley } 9303