1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction; 1867a56275SMatthew G Knepley 19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 2078e542f3SJed Brown const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "LOWER_BOUND", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "UPPER_BOUND", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", 2178e542f3SJed Brown "DM_BC_", NULL}; 220e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 23476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 24476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 25476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 262cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 2760c22052SBarry Smith 28a4121054SBarry Smith /*@ 29bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 300b4b7b1cSBarry Smith algebraic solvers, time integrators, and optimization algorithms in PETSc. 31a4121054SBarry Smith 32d083f849SBarry Smith Collective 33a4121054SBarry Smith 34a4121054SBarry Smith Input Parameter: 35bb7acecfSBarry Smith . comm - The communicator for the `DM` object 36a4121054SBarry Smith 37a4121054SBarry Smith Output Parameter: 38bb7acecfSBarry Smith . dm - The `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Level: beginner 41a4121054SBarry Smith 42bb7acecfSBarry Smith Notes: 43bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 44bb7acecfSBarry Smith 45bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 460b4b7b1cSBarry Smith error when you try to use the `dm`. 470b4b7b1cSBarry Smith 480b4b7b1cSBarry Smith `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did. 49bb7acecfSBarry Smith 501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 51a4121054SBarry Smith @*/ 52d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 53d71ae5a4SJacob Faibussowitsch { 54a4121054SBarry Smith DM v; 55e5e52638SMatthew G. Knepley PetscDS ds; 56a4121054SBarry Smith 57a4121054SBarry Smith PetscFunctionBegin; 584f572ea9SToby Isaac PetscAssertPointer(dm, 2); 59377f809aSBarry Smith 609566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 619566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 6262e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6349be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6449be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 650298fd71SBarry Smith v->ltogmap = NULL; 66a4ea9b21SRichard Tran Mills v->bind_below = 0; 671411c6eeSJed Brown v->bs = 1; 68171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 71c58f1c22SToby Isaac v->labels = NULL; 7234aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7334aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 74c58f1c22SToby Isaac v->depthLabel = NULL; 75ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 761bb6d2a8SBarry Smith v->localSection = NULL; 771bb6d2a8SBarry Smith v->globalSection = NULL; 783b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 793b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8079769bd5SJed Brown v->defaultConstraint.bias = NULL; 816858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 826858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 836858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8496173672SStefano Zampini v->dim = PETSC_DETERMINE; 859566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 8607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 879566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 889566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 8914f150ffSMatthew G. Knepley v->dmBC = NULL; 90a8fb8f29SToby Isaac v->coarseMesh = NULL; 91f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 92cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 939566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 949566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 954a7a4c06SLawrence Mitchell 961411c6eeSJed Brown *dm = v; 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 98a4121054SBarry Smith } 99a4121054SBarry Smith 10038221697SMatthew G. Knepley /*@ 101bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 10238221697SMatthew G. Knepley 103d083f849SBarry Smith Collective 10438221697SMatthew G. Knepley 10538221697SMatthew G. Knepley Input Parameter: 106bb7acecfSBarry Smith . dm - The original `DM` object 10738221697SMatthew G. Knepley 10838221697SMatthew G. Knepley Output Parameter: 109bb7acecfSBarry Smith . newdm - The new `DM` object 11038221697SMatthew G. Knepley 11138221697SMatthew G. Knepley Level: beginner 11238221697SMatthew G. Knepley 1131cb8cacdSPatrick Sanan Notes: 114bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 115bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 116bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1171bb6d2a8SBarry Smith 118bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 11989706ed2SPatrick Sanan 120bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 121bb7acecfSBarry Smith 12260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 12338221697SMatthew G. Knepley @*/ 124d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 125d71ae5a4SJacob Faibussowitsch { 12638221697SMatthew G. Knepley PetscSF sf; 12738221697SMatthew G. Knepley Vec coords; 12838221697SMatthew G. Knepley void *ctx; 129ec196627SMatthew G. Knepley MatOrderingType otype; 130ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1316858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13238221697SMatthew G. Knepley 13338221697SMatthew G. Knepley PetscFunctionBegin; 13438221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1354f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1369566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1379566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 138ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 139ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 140c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 141fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1429566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1439566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1449566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1459566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1469566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1479566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 148dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1493f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1509566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1519566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1529566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1539566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 154ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 155ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 156ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 157ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1586858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1596858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 160be4c1c3eSMatthew G. Knepley DM ncdm; 161be4c1c3eSMatthew G. Knepley PetscSection cs; 1625a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 163be4c1c3eSMatthew G. Knepley 1646858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1659566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 166462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1675a0206caSToby Isaac if (pEndMax >= 0) { 1686858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1696858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1709566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1715e50ca95SJames Wright if (dm->coordinates[i].dm->periodic.setup) { 1725e50ca95SJames Wright ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup; 1735e50ca95SJames Wright PetscCall(ncdm->periodic.setup(ncdm)); 1745e50ca95SJames Wright } 1756858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1766858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1779566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 178be4c1c3eSMatthew G. Knepley } 179be4c1c3eSMatthew G. Knepley } 1806858538eSMatthew G. Knepley } 1819566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1829566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1839566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 18438221697SMatthew G. Knepley if (coords) { 1859566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 18638221697SMatthew G. Knepley } else { 1879566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1889566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 18938221697SMatthew G. Knepley } 1906858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1916858538eSMatthew G. Knepley if (coords) { 1926858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 1936858538eSMatthew G. Knepley } else { 1946858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 1956858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 1966858538eSMatthew G. Knepley } 19790b157c4SStefano Zampini { 1984fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 1996858538eSMatthew G. Knepley 2004fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2014fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 202c6b900c6SMatthew G. Knepley } 20334aa8a36SMatthew G. Knepley { 20434aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 20534aa8a36SMatthew G. Knepley 2069566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2079566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 20834aa8a36SMatthew G. Knepley } 2093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21038221697SMatthew G. Knepley } 21138221697SMatthew G. Knepley 2125d83a8b1SBarry Smith /*@ 2135d83a8b1SBarry Smith DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2149a42bb27SBarry Smith 21520f4b53cSBarry Smith Logically Collective 2169a42bb27SBarry Smith 217147403d9SBarry Smith Input Parameters: 21832546409SMatthew G. Knepley + dm - initial distributed array 219bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2209a42bb27SBarry Smith 22120f4b53cSBarry Smith Options Database Key: 222147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2239a42bb27SBarry Smith 2249a42bb27SBarry Smith Level: intermediate 2259a42bb27SBarry Smith 22660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 227bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2289a42bb27SBarry Smith @*/ 22932546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 230d71ae5a4SJacob Faibussowitsch { 23132546409SMatthew G. Knepley char *tmp; 23232546409SMatthew G. Knepley 2339a42bb27SBarry Smith PetscFunctionBegin; 23432546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23532546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 23632546409SMatthew G. Knepley tmp = (char *)dm->vectype; 23732546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 23832546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2409a42bb27SBarry Smith } 2419a42bb27SBarry Smith 2425d83a8b1SBarry Smith /*@ 243bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 244c0dedaeaSBarry Smith 24520f4b53cSBarry Smith Logically Collective 246c0dedaeaSBarry Smith 247c0dedaeaSBarry Smith Input Parameter: 248c0dedaeaSBarry Smith . da - initial distributed array 249c0dedaeaSBarry Smith 250c0dedaeaSBarry Smith Output Parameter: 251c0dedaeaSBarry Smith . ctype - the vector type 252c0dedaeaSBarry Smith 253c0dedaeaSBarry Smith Level: intermediate 254c0dedaeaSBarry Smith 25560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 256c0dedaeaSBarry Smith @*/ 257d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 258d71ae5a4SJacob Faibussowitsch { 259c0dedaeaSBarry Smith PetscFunctionBegin; 260c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 261c0dedaeaSBarry Smith *ctype = da->vectype; 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 263c0dedaeaSBarry Smith } 264c0dedaeaSBarry Smith 2655f1ad066SMatthew G Knepley /*@ 266bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2675f1ad066SMatthew G Knepley 26820f4b53cSBarry Smith Not Collective 2695f1ad066SMatthew G Knepley 2705f1ad066SMatthew G Knepley Input Parameter: 271bb7acecfSBarry Smith . v - The `Vec` 2725f1ad066SMatthew G Knepley 2735f1ad066SMatthew G Knepley Output Parameter: 274bb7acecfSBarry Smith . dm - The `DM` 2755f1ad066SMatthew G Knepley 2765f1ad066SMatthew G Knepley Level: intermediate 2775f1ad066SMatthew G Knepley 278bb7acecfSBarry Smith Note: 279bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 280bb7acecfSBarry Smith 2811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2825f1ad066SMatthew G Knepley @*/ 283d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 284d71ae5a4SJacob Faibussowitsch { 2855f1ad066SMatthew G Knepley PetscFunctionBegin; 2865f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2874f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2905f1ad066SMatthew G Knepley } 2915f1ad066SMatthew G Knepley 2925f1ad066SMatthew G Knepley /*@ 293bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 2945f1ad066SMatthew G Knepley 29520f4b53cSBarry Smith Not Collective 2965f1ad066SMatthew G Knepley 2975f1ad066SMatthew G Knepley Input Parameters: 298bb7acecfSBarry Smith + v - The `Vec` 299bb7acecfSBarry Smith - dm - The `DM` 3005f1ad066SMatthew G Knepley 30120f4b53cSBarry Smith Level: developer 30220f4b53cSBarry Smith 30373ff1848SBarry Smith Notes: 304bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 305d9805387SMatthew G. Knepley 306bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 307bb7acecfSBarry Smith 3081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3095f1ad066SMatthew G Knepley @*/ 310d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 311d71ae5a4SJacob Faibussowitsch { 3125f1ad066SMatthew G Knepley PetscFunctionBegin; 3135f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 314d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3159566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3175f1ad066SMatthew G Knepley } 3185f1ad066SMatthew G Knepley 319cc4c1da9SBarry Smith /*@ 320bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3218f1509bcSBarry Smith 32220f4b53cSBarry Smith Logically Collective 3238f1509bcSBarry Smith 3248f1509bcSBarry Smith Input Parameters: 325bb7acecfSBarry Smith + dm - the `DM` context 3268f1509bcSBarry Smith - ctype - the matrix type 3278f1509bcSBarry Smith 32820f4b53cSBarry Smith Options Database Key: 3298f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3308f1509bcSBarry Smith 3318f1509bcSBarry Smith Level: intermediate 3328f1509bcSBarry Smith 3331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 334bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3358f1509bcSBarry Smith @*/ 336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 337d71ae5a4SJacob Faibussowitsch { 3388f1509bcSBarry Smith PetscFunctionBegin; 3398f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3408f1509bcSBarry Smith dm->coloringtype = ctype; 3413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3428f1509bcSBarry Smith } 3438f1509bcSBarry Smith 344cc4c1da9SBarry Smith /*@ 345bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 346521d9a4cSLisandro Dalcin 34720f4b53cSBarry Smith Logically Collective 348521d9a4cSLisandro Dalcin 349521d9a4cSLisandro Dalcin Input Parameter: 350bb7acecfSBarry Smith . dm - the `DM` context 3518f1509bcSBarry Smith 3528f1509bcSBarry Smith Output Parameter: 3538f1509bcSBarry Smith . ctype - the matrix type 3548f1509bcSBarry Smith 35520f4b53cSBarry Smith Options Database Key: 3568f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3578f1509bcSBarry Smith 3588f1509bcSBarry Smith Level: intermediate 3598f1509bcSBarry Smith 3601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36142747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3628f1509bcSBarry Smith @*/ 363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 364d71ae5a4SJacob Faibussowitsch { 3658f1509bcSBarry Smith PetscFunctionBegin; 3668f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3678f1509bcSBarry Smith *ctype = dm->coloringtype; 3683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3698f1509bcSBarry Smith } 3708f1509bcSBarry Smith 371cc4c1da9SBarry Smith /*@ 372bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3738f1509bcSBarry Smith 37420f4b53cSBarry Smith Logically Collective 3758f1509bcSBarry Smith 3768f1509bcSBarry Smith Input Parameters: 377bb7acecfSBarry Smith + dm - the `DM` context 378bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 379521d9a4cSLisandro Dalcin 38020f4b53cSBarry Smith Options Database Key: 381bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 382521d9a4cSLisandro Dalcin 383521d9a4cSLisandro Dalcin Level: intermediate 384521d9a4cSLisandro Dalcin 38542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 386521d9a4cSLisandro Dalcin @*/ 387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 388d71ae5a4SJacob Faibussowitsch { 38932546409SMatthew G. Knepley char *tmp; 39032546409SMatthew G. Knepley 391521d9a4cSLisandro Dalcin PetscFunctionBegin; 392521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39332546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 39432546409SMatthew G. Knepley tmp = (char *)dm->mattype; 3959566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 39632546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 3973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 398521d9a4cSLisandro Dalcin } 399521d9a4cSLisandro Dalcin 400cc4c1da9SBarry Smith /*@ 40120f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 402c0dedaeaSBarry Smith 40320f4b53cSBarry Smith Logically Collective 404c0dedaeaSBarry Smith 405c0dedaeaSBarry Smith Input Parameter: 406bb7acecfSBarry Smith . dm - the `DM` context 407c0dedaeaSBarry Smith 408c0dedaeaSBarry Smith Output Parameter: 409c0dedaeaSBarry Smith . ctype - the matrix type 410c0dedaeaSBarry Smith 411c0dedaeaSBarry Smith Level: intermediate 412c0dedaeaSBarry Smith 41342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 414c0dedaeaSBarry Smith @*/ 415d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 416d71ae5a4SJacob Faibussowitsch { 417c0dedaeaSBarry Smith PetscFunctionBegin; 418c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 419c0dedaeaSBarry Smith *ctype = dm->mattype; 4203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 421c0dedaeaSBarry Smith } 422c0dedaeaSBarry Smith 423c688c046SMatthew G Knepley /*@ 424bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 425c688c046SMatthew G Knepley 42620f4b53cSBarry Smith Not Collective 427c688c046SMatthew G Knepley 428c688c046SMatthew G Knepley Input Parameter: 429bb7acecfSBarry Smith . A - The `Mat` 430c688c046SMatthew G Knepley 431c688c046SMatthew G Knepley Output Parameter: 432bb7acecfSBarry Smith . dm - The `DM` 433c688c046SMatthew G Knepley 434c688c046SMatthew G Knepley Level: intermediate 435c688c046SMatthew G Knepley 436bb7acecfSBarry Smith Note: 437bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 438bb7acecfSBarry Smith 43973ff1848SBarry Smith Developer Note: 440bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4418f1509bcSBarry Smith 4421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 443c688c046SMatthew G Knepley @*/ 444d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 445d71ae5a4SJacob Faibussowitsch { 446c688c046SMatthew G Knepley PetscFunctionBegin; 447c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4484f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4499566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 451c688c046SMatthew G Knepley } 452c688c046SMatthew G Knepley 453c688c046SMatthew G Knepley /*@ 454bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 455c688c046SMatthew G Knepley 45620f4b53cSBarry Smith Not Collective 457c688c046SMatthew G Knepley 458c688c046SMatthew G Knepley Input Parameters: 45920f4b53cSBarry Smith + A - The `Mat` 46020f4b53cSBarry Smith - dm - The `DM` 461c688c046SMatthew G Knepley 462bb7acecfSBarry Smith Level: developer 463c688c046SMatthew G Knepley 464bb7acecfSBarry Smith Note: 465bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 466bb7acecfSBarry Smith 46773ff1848SBarry Smith Developer Note: 468bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 469bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4708f1509bcSBarry Smith 4711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 472c688c046SMatthew G Knepley @*/ 473d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 474d71ae5a4SJacob Faibussowitsch { 475c688c046SMatthew G Knepley PetscFunctionBegin; 476c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4778865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4789566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480c688c046SMatthew G Knepley } 481c688c046SMatthew G Knepley 482cc4c1da9SBarry Smith /*@ 483bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4849a42bb27SBarry Smith 48520f4b53cSBarry Smith Logically Collective 4869a42bb27SBarry Smith 487d8d19677SJose E. Roman Input Parameters: 48860225df5SJacob Faibussowitsch + dm - the `DM` context 489bb7acecfSBarry Smith - prefix - the prefix to prepend 4909a42bb27SBarry Smith 49120f4b53cSBarry Smith Level: advanced 49220f4b53cSBarry Smith 49320f4b53cSBarry Smith Note: 4949a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4959a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 4969a42bb27SBarry Smith 4971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 4989a42bb27SBarry Smith @*/ 499d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 500d71ae5a4SJacob Faibussowitsch { 5019a42bb27SBarry Smith PetscFunctionBegin; 5029a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5039566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5041baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5051baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5079a42bb27SBarry Smith } 5089a42bb27SBarry Smith 509cc4c1da9SBarry Smith /*@ 510da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 511bb7acecfSBarry Smith `DM` options in the options database. 51231697293SDave May 51320f4b53cSBarry Smith Logically Collective 51431697293SDave May 51531697293SDave May Input Parameters: 516bb7acecfSBarry Smith + dm - the `DM` context 517bb7acecfSBarry Smith - prefix - the string to append to the current prefix 51831697293SDave May 51920f4b53cSBarry Smith Level: advanced 52020f4b53cSBarry Smith 52120f4b53cSBarry Smith Note: 522bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 52331697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 52431697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 52531697293SDave May 5261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 52731697293SDave May @*/ 528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 529d71ae5a4SJacob Faibussowitsch { 53031697293SDave May PetscFunctionBegin; 53131697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5329566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 53431697293SDave May } 53531697293SDave May 536cc4c1da9SBarry Smith /*@ 53731697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 538bb7acecfSBarry Smith DM options in the options database. 53931697293SDave May 54031697293SDave May Not Collective 54131697293SDave May 5422fe279fdSBarry Smith Input Parameter: 543bb7acecfSBarry Smith . dm - the `DM` context 54431697293SDave May 5452fe279fdSBarry Smith Output Parameter: 54631697293SDave May . prefix - pointer to the prefix string used is returned 54731697293SDave May 54831697293SDave May Level: advanced 54931697293SDave May 5501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 55131697293SDave May @*/ 552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 553d71ae5a4SJacob Faibussowitsch { 55431697293SDave May PetscFunctionBegin; 55531697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55831697293SDave May } 55931697293SDave May 56062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 561d71ae5a4SJacob Faibussowitsch { 5626eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 56388bdff64SToby Isaac 56488bdff64SToby Isaac PetscFunctionBegin; 565aab5bcd8SJed Brown *ncrefct = 0; 56688bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 56788bdff64SToby Isaac refct--; 56888bdff64SToby Isaac if (recurseCoarse) { 56988bdff64SToby Isaac PetscInt coarseCount; 57088bdff64SToby Isaac 57162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 57288bdff64SToby Isaac refct += coarseCount; 57388bdff64SToby Isaac } 57488bdff64SToby Isaac } 57588bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 57688bdff64SToby Isaac refct--; 57788bdff64SToby Isaac if (recurseFine) { 57888bdff64SToby Isaac PetscInt fineCount; 57988bdff64SToby Isaac 58062e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 58188bdff64SToby Isaac refct += fineCount; 58288bdff64SToby Isaac } 58388bdff64SToby Isaac } 58488bdff64SToby Isaac *ncrefct = refct; 5853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58688bdff64SToby Isaac } 58788bdff64SToby Isaac 58862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 58962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 59062e5d2d2SJDBetteridge { 59162e5d2d2SJDBetteridge PetscFunctionBegin; 59262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 5933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59462e5d2d2SJDBetteridge } 59562e5d2d2SJDBetteridge 596d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 597d71ae5a4SJacob Faibussowitsch { 5985d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 599354557abSToby Isaac 600354557abSToby Isaac PetscFunctionBegin; 601354557abSToby Isaac /* destroy the labels */ 602354557abSToby Isaac while (next) { 603354557abSToby Isaac DMLabelLink tmp = next->next; 604354557abSToby Isaac 6055d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 606ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6079566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6089566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 609354557abSToby Isaac next = tmp; 610354557abSToby Isaac } 6115d80c0bfSVaclav Hapla dm->labels = NULL; 6123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 613354557abSToby Isaac } 614354557abSToby Isaac 61566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 616d71ae5a4SJacob Faibussowitsch { 6176858538eSMatthew G. Knepley PetscFunctionBegin; 6186858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6196858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6206858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6216858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6226858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6246858538eSMatthew G. Knepley } 6256858538eSMatthew G. Knepley 6260764c050SBarry Smith /*@ 627bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 62847c6ae99SBarry Smith 62920f4b53cSBarry Smith Collective 63047c6ae99SBarry Smith 63147c6ae99SBarry Smith Input Parameter: 632bb7acecfSBarry Smith . dm - the `DM` object to destroy 63347c6ae99SBarry Smith 63447c6ae99SBarry Smith Level: developer 63547c6ae99SBarry Smith 6361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 63747c6ae99SBarry Smith @*/ 638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 639d71ae5a4SJacob Faibussowitsch { 6406eb26441SStefano Zampini PetscInt cnt; 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith PetscFunctionBegin; 6433ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 644f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 64587e657c6SBarry Smith 64688bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 64762e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 648f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6499371c9d4SSatish Balay if (--cnt > 0) { 6509371c9d4SSatish Balay *dm = NULL; 6513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6529371c9d4SSatish Balay } 653f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 654f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6556eb26441SStefano Zampini 6569566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6579566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 658974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 659974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6602348bcf4SPeter Brune 661b17ce1afSJed Brown /* Destroy the list of hooks */ 662c833c3b5SJed Brown { 663c833c3b5SJed Brown DMCoarsenHookLink link, next; 664b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 665b17ce1afSJed Brown next = link->next; 6669566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 667b17ce1afSJed Brown } 6680298fd71SBarry Smith (*dm)->coarsenhook = NULL; 669c833c3b5SJed Brown } 670c833c3b5SJed Brown { 671c833c3b5SJed Brown DMRefineHookLink link, next; 672c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 673c833c3b5SJed Brown next = link->next; 6749566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 675c833c3b5SJed Brown } 6760298fd71SBarry Smith (*dm)->refinehook = NULL; 677c833c3b5SJed Brown } 678be081cd6SPeter Brune { 679be081cd6SPeter Brune DMSubDomainHookLink link, next; 680be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 681be081cd6SPeter Brune next = link->next; 6829566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 683be081cd6SPeter Brune } 6840298fd71SBarry Smith (*dm)->subdomainhook = NULL; 685be081cd6SPeter Brune } 686baf369e7SPeter Brune { 687baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 688baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 689baf369e7SPeter Brune next = link->next; 6909566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 691baf369e7SPeter Brune } 6920298fd71SBarry Smith (*dm)->gtolhook = NULL; 693baf369e7SPeter Brune } 694d4d07f1eSToby Isaac { 695d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 696d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 697d4d07f1eSToby Isaac next = link->next; 6989566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 699d4d07f1eSToby Isaac } 700d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 701d4d07f1eSToby Isaac } 702aa1993deSMatthew G Knepley /* Destroy the work arrays */ 703aa1993deSMatthew G Knepley { 704aa1993deSMatthew G Knepley DMWorkLink link, next; 705835f2295SStefano Zampini PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem); 706aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 707aa1993deSMatthew G Knepley next = link->next; 7089566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7099566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 710aa1993deSMatthew G Knepley } 7110298fd71SBarry Smith (*dm)->workin = NULL; 712aa1993deSMatthew G Knepley } 713c58f1c22SToby Isaac /* destroy the labels */ 7149566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 715f4cdcedcSVaclav Hapla /* destroy the fields */ 7169566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 717f4cdcedcSVaclav Hapla /* destroy the boundaries */ 718e6f8dbb6SToby Isaac { 719e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 720e6f8dbb6SToby Isaac while (next) { 721e6f8dbb6SToby Isaac DMBoundary b = next; 722e6f8dbb6SToby Isaac 723e6f8dbb6SToby Isaac next = b->next; 7249566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 725e6f8dbb6SToby Isaac } 726e6f8dbb6SToby Isaac } 727b17ce1afSJed Brown 7289566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7309566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 73152536dc3SBarry Smith 73248a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7339566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7359566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7369566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 73788ed4aceSMatthew G Knepley 7389566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7399566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 740adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7419566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7429566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7439566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7449566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7459566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 74648a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7479566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 748e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7499566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 75048a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7516eb26441SStefano Zampini 7529566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 75348a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7549566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7554fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7569566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7579566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 758*4758e3ceSMatthew G. Knepley PetscCall(PetscFree2((*dm)->nullspaceConstructors, (*dm)->nearnullspaceConstructors)); 7596858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7606858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7619566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7629566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 764ddedc8f6SJames Wright for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) { 765ddedc8f6SJames Wright PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i])); 766ddedc8f6SJames Wright PetscCall(VecDestroy(&(*dm)->periodic.affine[i])); 767ddedc8f6SJames Wright } 768ddedc8f6SJames Wright if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine)); 7696636e97aSMatthew G Knepley 7709566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7719566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 772e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7739566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 774732e2eb9SMatthew G Knepley 775213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7769566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 777d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 778f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7799566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7809566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 781f918ec44SMatthew G. Knepley #endif 782435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7839566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78547c6ae99SBarry Smith } 78647c6ae99SBarry Smith 787d7bf68aeSBarry Smith /*@ 788bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 789d7bf68aeSBarry Smith 79020f4b53cSBarry Smith Collective 791d7bf68aeSBarry Smith 792d7bf68aeSBarry Smith Input Parameter: 793bb7acecfSBarry Smith . dm - the `DM` object to setup 794d7bf68aeSBarry Smith 795bb7acecfSBarry Smith Level: intermediate 796d7bf68aeSBarry Smith 797bb7acecfSBarry Smith Note: 798bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 799bb7acecfSBarry Smith 8001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 801d7bf68aeSBarry Smith @*/ 802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 803d71ae5a4SJacob Faibussowitsch { 804d7bf68aeSBarry Smith PetscFunctionBegin; 805171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8063ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 807dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8088387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 810d7bf68aeSBarry Smith } 811d7bf68aeSBarry Smith 812d7bf68aeSBarry Smith /*@ 813bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 814d7bf68aeSBarry Smith 81520f4b53cSBarry Smith Collective 816d7bf68aeSBarry Smith 817d7bf68aeSBarry Smith Input Parameter: 818bb7acecfSBarry Smith . dm - the `DM` object to set options for 819d7bf68aeSBarry Smith 82020f4b53cSBarry Smith Options Database Keys: 821bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 822bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 823bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 824a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 82520f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 82622d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...> - List of prefixes for option processing phases 82720f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8289318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 829cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8305dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8319318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8329318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8339318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 834bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 835bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 836b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool> - `PETSC_TRUE` turns on topological orientation (flipping edges and faces) 8379318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 838be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 839ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim> - Change the coordinate dimension of a mesh (usually given with cdm_ prefix) 840be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 841be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8429318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8439318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8449318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 845bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8469318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8479318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8489318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8499318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 850bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8519318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8529318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8539318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8549318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 855bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 85661f058f9SMatthew G. Knepley . -dm_plex_save_transform <bool> - Save the `DMPlexTransform` that produced this mesh 857d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 858d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 859d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 860d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 861d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 862909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 863909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8649318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8659318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8669318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 86720f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 868d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 86920f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 870bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 871bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 872bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 873bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 874bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 875384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 876d7bf68aeSBarry Smith 87795eb5ee5SVaclav Hapla Level: intermediate 87895eb5ee5SVaclav Hapla 8798e704042SBarry Smith Note: 8808e704042SBarry Smith For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called. 8818e704042SBarry Smith 8821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 883bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 8848e704042SBarry Smith `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()` 885d7bf68aeSBarry Smith @*/ 886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 887d71ae5a4SJacob Faibussowitsch { 8887781c08eSBarry Smith char typeName[256]; 889ca266f36SBarry Smith PetscBool flg; 890d7bf68aeSBarry Smith 891d7bf68aeSBarry Smith PetscFunctionBegin; 892171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89349be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8949566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 8959566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 896dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 897d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 8989566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 8999566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9001baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9019566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9021baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 903863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 906eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 907dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 908f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 909dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 910d0609cedSBarry Smith PetscOptionsEnd(); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912d7bf68aeSBarry Smith } 913d7bf68aeSBarry Smith 914ffeef943SBarry Smith /*@ 915bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 916fe2efc57SMark 91720f4b53cSBarry Smith Collective 918fe2efc57SMark 919fe2efc57SMark Input Parameters: 920bb7acecfSBarry Smith + dm - the `DM` object 921ce78bad3SBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in `obj` is used) 92260225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 923fe2efc57SMark 924fe2efc57SMark Level: intermediate 925bb7acecfSBarry Smith 926bb7acecfSBarry Smith Note: 927bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 928bb7acecfSBarry Smith 92960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 930fe2efc57SMark @*/ 931ce78bad3SBarry Smith PetscErrorCode DMViewFromOptions(DM dm, PeOp PetscObject obj, const char name[]) 932d71ae5a4SJacob Faibussowitsch { 933fe2efc57SMark PetscFunctionBegin; 934fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9359566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 937fe2efc57SMark } 938fe2efc57SMark 939ffeef943SBarry Smith /*@ 940bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 941bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94247c6ae99SBarry Smith 94320f4b53cSBarry Smith Collective 94447c6ae99SBarry Smith 945d8d19677SJose E. Roman Input Parameters: 946bb7acecfSBarry Smith + dm - the `DM` object to view 94747c6ae99SBarry Smith - v - the viewer 94847c6ae99SBarry Smith 949c8a418c4SMatthew G. Knepley Options Database Keys: 950c8a418c4SMatthew G. Knepley + -view_pyvista_warp <f> - Warps the mesh by the active scalar with factor f 951a36b0f0fSMatthew G. Knepley . -view_pyvista_clip <xl,xu,yl,yu,zl,zu> - Defines the clipping box 952a36b0f0fSMatthew G. Knepley . -dm_view_draw_line_color <int> - Specify the X-window color for cell borders 953a36b0f0fSMatthew G. Knepley . -dm_view_draw_cell_color <int> - Specify the X-window color for cells 954a36b0f0fSMatthew G. Knepley - -dm_view_draw_affine <bool> - Flag to ignore high-order edges 955c8a418c4SMatthew G. Knepley 95620f4b53cSBarry Smith Level: beginner 95720f4b53cSBarry Smith 95849c89c76SBlaise Bourdin Notes: 95949c89c76SBlaise Bourdin 96049c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX` 961bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 962bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 963cd7e8a5eSksagiyam 96449c89c76SBlaise Bourdin `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels) 96549c89c76SBlaise Bourdin consists of sequentially numbered cells. 96649c89c76SBlaise Bourdin 96749c89c76SBlaise Bourdin If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written. 96849c89c76SBlaise Bourdin 969c8a418c4SMatthew G. Knepley Only TRI, TET, QUAD, and HEX cells are supported in ExodusII. 97049c89c76SBlaise Bourdin 97149c89c76SBlaise Bourdin `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2. 97249c89c76SBlaise Bourdin The order of the mesh shall be set using `PetscViewerExodusIISetOrder()` 97349c89c76SBlaise Bourdin 974d7c1f440SPierre Jolivet Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`. 97549c89c76SBlaise Bourdin 9761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 97747c6ae99SBarry Smith @*/ 978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 979d71ae5a4SJacob Faibussowitsch { 98032c0f0efSBarry Smith PetscBool isbinary; 98176a8abe0SBarry Smith PetscMPIInt size; 98276a8abe0SBarry Smith PetscViewerFormat format; 98347c6ae99SBarry Smith 98447c6ae99SBarry Smith PetscFunctionBegin; 985171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 98648a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 987b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 98874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 98974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 99074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 99174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 99274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 99374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 99474903a4fSStefano Zampini in an error here */ 99574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 997b1b135c8SBarry Smith 99842d0c57aSJames Wright PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0)); 9999566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 10009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 10013ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 10029566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 10039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 100432c0f0efSBarry Smith if (isbinary) { 100555849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 100632c0f0efSBarry Smith char type[256]; 100732c0f0efSBarry Smith 10089566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 1009c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 10109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 101132c0f0efSBarry Smith } 1012dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 101342d0c57aSJames Wright PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0)); 10143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 101547c6ae99SBarry Smith } 101647c6ae99SBarry Smith 101747c6ae99SBarry Smith /*@ 1018bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 1019bb7acecfSBarry Smith that is it has no ghost locations. 102047c6ae99SBarry Smith 102120f4b53cSBarry Smith Collective 102247c6ae99SBarry Smith 102347c6ae99SBarry Smith Input Parameter: 1024bb7acecfSBarry Smith . dm - the `DM` object 102547c6ae99SBarry Smith 102647c6ae99SBarry Smith Output Parameter: 102747c6ae99SBarry Smith . vec - the global vector 102847c6ae99SBarry Smith 1029073dac72SJed Brown Level: beginner 103047c6ae99SBarry Smith 10311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1032bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 103347c6ae99SBarry Smith @*/ 1034d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1035d71ae5a4SJacob Faibussowitsch { 103647c6ae99SBarry Smith PetscFunctionBegin; 1037171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10384f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1039dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 104076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1041c6b011d8SStefano Zampini DM vdm; 1042c6b011d8SStefano Zampini 10439566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10447a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1045c6b011d8SStefano Zampini } 10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104747c6ae99SBarry Smith } 104847c6ae99SBarry Smith 104947c6ae99SBarry Smith /*@ 1050bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 105147c6ae99SBarry Smith 105247c6ae99SBarry Smith Not Collective 105347c6ae99SBarry Smith 105447c6ae99SBarry Smith Input Parameter: 1055bb7acecfSBarry Smith . dm - the `DM` object 105647c6ae99SBarry Smith 105747c6ae99SBarry Smith Output Parameter: 105847c6ae99SBarry Smith . vec - the local vector 105947c6ae99SBarry Smith 1060073dac72SJed Brown Level: beginner 106147c6ae99SBarry Smith 106220f4b53cSBarry Smith Note: 1063bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1064bb7acecfSBarry Smith 10651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1066bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 106747c6ae99SBarry Smith @*/ 1068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1069d71ae5a4SJacob Faibussowitsch { 107047c6ae99SBarry Smith PetscFunctionBegin; 1071171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10724f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1073dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 107476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1075c6b011d8SStefano Zampini DM vdm; 1076c6b011d8SStefano Zampini 10779566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10787a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1079c6b011d8SStefano Zampini } 10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108147c6ae99SBarry Smith } 108247c6ae99SBarry Smith 10831411c6eeSJed Brown /*@ 1084bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10851411c6eeSJed Brown 108620f4b53cSBarry Smith Collective 10871411c6eeSJed Brown 10881411c6eeSJed Brown Input Parameter: 1089bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10901411c6eeSJed Brown 10911411c6eeSJed Brown Output Parameter: 10921411c6eeSJed Brown . ltog - the mapping 10931411c6eeSJed Brown 1094bb7acecfSBarry Smith Level: advanced 10951411c6eeSJed Brown 10961411c6eeSJed Brown Notes: 1097bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10981411c6eeSJed Brown 1099bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1100bb7acecfSBarry Smith need to use this function with those objects. 1101bb7acecfSBarry Smith 1102bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1103bb7acecfSBarry Smith 110460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1105bb7acecfSBarry Smith `DMCreateMatrix()` 11061411c6eeSJed Brown @*/ 1107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1108d71ae5a4SJacob Faibussowitsch { 11090be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 11101411c6eeSJed Brown 11111411c6eeSJed Brown PetscFunctionBegin; 11121411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11134f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 11141411c6eeSJed Brown if (!dm->ltogmap) { 111537d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 111637d0c07bSMatthew G Knepley 11179566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 111837d0c07bSMatthew G Knepley if (section) { 1119a974ec88SMatthew G. Knepley const PetscInt *cdofs; 112037d0c07bSMatthew G Knepley PetscInt *ltog; 1121ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 112237d0c07bSMatthew G Knepley 11239566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 112737d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1128e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 112937d0c07bSMatthew G Knepley 113037d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11351a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11361a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1137ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11385227eafbSStefano Zampini 1139e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11405227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1141e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1142e6befd46SJed Brown cind++; 1143e6befd46SJed Brown } else { 11445227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1145e6befd46SJed Brown } 114637d0c07bSMatthew G Knepley } 114737d0c07bSMatthew G Knepley } 1148bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11491690c2aeSBarry Smith bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs; 11509371c9d4SSatish Balay bsLocal[1] = bs; 11519566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11529371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11539371c9d4SSatish Balay bs = 1; 11549371c9d4SSatish Balay } else { 11559371c9d4SSatish Balay bs = bsMinMax[0]; 11569371c9d4SSatish Balay } 11577591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11587591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1159ccf3bd66SMatthew G. Knepley if (bs > 1) { 1160ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1161ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1162ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1163ca469d19SJed Brown } 1164ccf3bd66SMatthew G. Knepley n /= bs; 1165ccf3bd66SMatthew G. Knepley } 11669566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1167dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 116837d0c07bSMatthew G Knepley } 11691411c6eeSJed Brown *ltog = dm->ltogmap; 11703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11711411c6eeSJed Brown } 11721411c6eeSJed Brown 11731411c6eeSJed Brown /*@ 1174bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11751411c6eeSJed Brown 11761411c6eeSJed Brown Not Collective 11771411c6eeSJed Brown 11781411c6eeSJed Brown Input Parameter: 1179bb7acecfSBarry Smith . dm - the `DM` with block structure 11801411c6eeSJed Brown 11811411c6eeSJed Brown Output Parameter: 11821411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11831411c6eeSJed Brown 11841411c6eeSJed Brown Level: intermediate 11851411c6eeSJed Brown 118673ff1848SBarry Smith Notes: 1187bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1188bb7acecfSBarry Smith 1189bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1190bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1191bb7acecfSBarry Smith 11921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11931411c6eeSJed Brown @*/ 1194d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1195d71ae5a4SJacob Faibussowitsch { 11961411c6eeSJed Brown PetscFunctionBegin; 11971411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11984f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11997a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 12001411c6eeSJed Brown *bs = dm->bs; 12013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12021411c6eeSJed Brown } 12031411c6eeSJed Brown 1204ffeef943SBarry Smith /*@ 1205bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1206bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 120747c6ae99SBarry Smith 120820f4b53cSBarry Smith Collective 120947c6ae99SBarry Smith 1210d8d19677SJose E. Roman Input Parameters: 1211bb7acecfSBarry Smith + dmc - the `DM` object 1212bb7acecfSBarry Smith - dmf - the second, finer `DM` object 121347c6ae99SBarry Smith 1214d8d19677SJose E. Roman Output Parameters: 121547c6ae99SBarry Smith + mat - the interpolation 1216b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()` 121747c6ae99SBarry Smith 121847c6ae99SBarry Smith Level: developer 121947c6ae99SBarry Smith 122095452b02SPatrick Sanan Notes: 1221bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1222bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1223d52bd9f3SBarry Smith 1224bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1225bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 122685afcc9aSBarry Smith 12271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 122847c6ae99SBarry Smith @*/ 1229d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1230d71ae5a4SJacob Faibussowitsch { 123147c6ae99SBarry Smith PetscFunctionBegin; 1232a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1233a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12344f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12359566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1236dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 123947c6ae99SBarry Smith } 124047c6ae99SBarry Smith 12413ad4599aSBarry Smith /*@ 1242a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1243a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12442ed6491fSPatrick Sanan 12452ed6491fSPatrick Sanan Input Parameters: 1246bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1247bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12482ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12492ed6491fSPatrick Sanan 12502ed6491fSPatrick Sanan Output Parameter: 12512ed6491fSPatrick Sanan . scale - the scaled vector 12522ed6491fSPatrick Sanan 1253bb7acecfSBarry Smith Level: advanced 12542ed6491fSPatrick Sanan 125573ff1848SBarry Smith Note: 1256a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1257a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1258a4e35b19SJacob Faibussowitsch 125973ff1848SBarry Smith Developer Note: 1260bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1261e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1262e9c74fd6SRichard Tran Mills 126360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12642ed6491fSPatrick Sanan @*/ 1265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1266d71ae5a4SJacob Faibussowitsch { 12672ed6491fSPatrick Sanan Vec fine; 12682ed6491fSPatrick Sanan PetscScalar one = 1.0; 12699704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1270e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12719704db99SRichard Tran Mills #endif 12722ed6491fSPatrick Sanan 12732ed6491fSPatrick Sanan PetscFunctionBegin; 12749566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12759566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12769566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12779704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12789704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12799704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12809704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12819566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1282e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12839566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12849566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12859566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 128683aa49f4SRichard Tran Mills } 12879704db99SRichard Tran Mills #endif 12889566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12909566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12922ed6491fSPatrick Sanan } 12932ed6491fSPatrick Sanan 12942ed6491fSPatrick Sanan /*@ 1295bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1296bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12973ad4599aSBarry Smith 129820f4b53cSBarry Smith Collective 12993ad4599aSBarry Smith 1300d8d19677SJose E. Roman Input Parameters: 1301bb7acecfSBarry Smith + dmc - the `DM` object 1302bb7acecfSBarry Smith - dmf - the second, finer `DM` object 13033ad4599aSBarry Smith 13043ad4599aSBarry Smith Output Parameter: 13053ad4599aSBarry Smith . mat - the restriction 13063ad4599aSBarry Smith 13073ad4599aSBarry Smith Level: developer 13083ad4599aSBarry Smith 1309bb7acecfSBarry Smith Note: 1310bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1311bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 13123ad4599aSBarry Smith 13131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 13143ad4599aSBarry Smith @*/ 1315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1316d71ae5a4SJacob Faibussowitsch { 13173ad4599aSBarry Smith PetscFunctionBegin; 1318a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1319a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13204f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13219566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1322dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13253ad4599aSBarry Smith } 13263ad4599aSBarry Smith 132747c6ae99SBarry Smith /*@ 1328a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 132947c6ae99SBarry Smith 133020f4b53cSBarry Smith Collective 133147c6ae99SBarry Smith 1332d8d19677SJose E. Roman Input Parameters: 1333bb7acecfSBarry Smith + dac - the `DM` object 1334bb7acecfSBarry Smith - daf - the second, finer `DM` object 133547c6ae99SBarry Smith 133647c6ae99SBarry Smith Output Parameter: 13376dbf9973SLawrence Mitchell . mat - the injection 133847c6ae99SBarry Smith 133947c6ae99SBarry Smith Level: developer 134047c6ae99SBarry Smith 1341a4e35b19SJacob Faibussowitsch Notes: 1342a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1343a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1344a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1345a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1346a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1347a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1348a4e35b19SJacob Faibussowitsch 1349bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1350bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 135185afcc9aSBarry Smith 13521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1353bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 135447c6ae99SBarry Smith @*/ 1355d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1356d71ae5a4SJacob Faibussowitsch { 135747c6ae99SBarry Smith PetscFunctionBegin; 1358a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1359a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13604f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1362dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13639566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 136547c6ae99SBarry Smith } 136647c6ae99SBarry Smith 1367b412c318SBarry Smith /*@ 1368bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1369bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1370bd041c0cSMatthew G. Knepley 137120f4b53cSBarry Smith Collective 1372bd041c0cSMatthew G. Knepley 1373d8d19677SJose E. Roman Input Parameters: 1374bb7acecfSBarry Smith + dmc - the target `DM` object 13758c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL` 1376bd041c0cSMatthew G. Knepley 1377bd041c0cSMatthew G. Knepley Output Parameter: 1378b4937a87SMatthew G. Knepley . mat - the mass matrix 1379bd041c0cSMatthew G. Knepley 1380bd041c0cSMatthew G. Knepley Level: developer 1381bd041c0cSMatthew G. Knepley 1382bb7acecfSBarry Smith Notes: 1383bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1384bb7acecfSBarry Smith 13858c1c0954SStefano Zampini if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1386bb7acecfSBarry Smith 138742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1388bd041c0cSMatthew G. Knepley @*/ 1389d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1390d71ae5a4SJacob Faibussowitsch { 1391bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1392b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 13938c1c0954SStefano Zampini if (!dmf) dmf = dmc; 1394b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13954f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13968c1c0954SStefano Zampini PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 1397dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13988c1c0954SStefano Zampini PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0)); 13993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1400b4937a87SMatthew G. Knepley } 1401b4937a87SMatthew G. Knepley 1402b4937a87SMatthew G. Knepley /*@ 1403bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1404b4937a87SMatthew G. Knepley 140520f4b53cSBarry Smith Collective 1406b4937a87SMatthew G. Knepley 1407b4937a87SMatthew G. Knepley Input Parameter: 1408bb7acecfSBarry Smith . dm - the `DM` object 1409b4937a87SMatthew G. Knepley 14107dcfde4dSJose E. Roman Output Parameters: 14118e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector 14128e9849d2SStefano Zampini - lm - the global lumped mass matrix, which is a diagonal matrix, represented as a vector 1413b4937a87SMatthew G. Knepley 1414b4937a87SMatthew G. Knepley Level: developer 1415b4937a87SMatthew G. Knepley 1416bb7acecfSBarry Smith Note: 1417bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1418bb7acecfSBarry Smith 141960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1420b4937a87SMatthew G. Knepley @*/ 14218e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm) 1422d71ae5a4SJacob Faibussowitsch { 1423b4937a87SMatthew G. Knepley PetscFunctionBegin; 1424b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14258e9849d2SStefano Zampini if (llm) PetscAssertPointer(llm, 2); 14268e9849d2SStefano Zampini if (lm) PetscAssertPointer(lm, 3); 14278e9849d2SStefano Zampini if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm); 14283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1429bd041c0cSMatthew G. Knepley } 1430bd041c0cSMatthew G. Knepley 1431bd041c0cSMatthew G. Knepley /*@ 1432bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1433bb7acecfSBarry Smith of a PDE on the `DM`. 143447c6ae99SBarry Smith 143520f4b53cSBarry Smith Collective 143647c6ae99SBarry Smith 1437d8d19677SJose E. Roman Input Parameters: 1438bb7acecfSBarry Smith + dm - the `DM` object 1439bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 144047c6ae99SBarry Smith 144147c6ae99SBarry Smith Output Parameter: 144247c6ae99SBarry Smith . coloring - the coloring 144347c6ae99SBarry Smith 14441bf8429eSBarry Smith Level: developer 14451bf8429eSBarry Smith 1446ec5066bdSBarry Smith Notes: 1447bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1448bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1449ec5066bdSBarry Smith 1450bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14511bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14521bf8429eSBarry Smith otherwise an error will be generated. 1453ec5066bdSBarry Smith 14541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1455aab9d709SJed Brown @*/ 1456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1457d71ae5a4SJacob Faibussowitsch { 145847c6ae99SBarry Smith PetscFunctionBegin; 1459171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14604f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1461dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 146347c6ae99SBarry Smith } 146447c6ae99SBarry Smith 1465b412c318SBarry Smith /*@ 1466bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 146747c6ae99SBarry Smith 146820f4b53cSBarry Smith Collective 146947c6ae99SBarry Smith 147047c6ae99SBarry Smith Input Parameter: 1471bb7acecfSBarry Smith . dm - the `DM` object 147247c6ae99SBarry Smith 147347c6ae99SBarry Smith Output Parameter: 147447c6ae99SBarry Smith . mat - the empty Jacobian 147547c6ae99SBarry Smith 147620f4b53cSBarry Smith Options Database Key: 1477bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1478f27dd7c6SMatthew G. Knepley 147920f4b53cSBarry Smith Level: beginner 148020f4b53cSBarry Smith 148195452b02SPatrick Sanan Notes: 148295452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 148394013140SBarry Smith do not need to do it yourself. 148494013140SBarry Smith 148594013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1486bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 148794013140SBarry Smith 1488bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 148994013140SBarry Smith internally by PETSc. 149094013140SBarry Smith 1491bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1492bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 149394013140SBarry Smith 14941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1495aab9d709SJed Brown @*/ 1496d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1497d71ae5a4SJacob Faibussowitsch { 149847c6ae99SBarry Smith PetscFunctionBegin; 1499171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 15004f572ea9SToby Isaac PetscAssertPointer(mat, 2); 15019566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 15029566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1503dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 150476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1505c6b011d8SStefano Zampini DM mdm; 1506c6b011d8SStefano Zampini 15079566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 15087a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1509c6b011d8SStefano Zampini } 1510e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1511e5e52638SMatthew G. Knepley if (dm->Nf) { 1512e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1513649ef022SMatthew Knepley PetscInt Nf, f; 1514e571a35bSMatthew G. Knepley 15159566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1516649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1517*4758e3ceSMatthew G. Knepley if (dm->nullspaceConstructors && dm->nullspaceConstructors[f]) { 15189566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 15199566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 15209566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1521649ef022SMatthew Knepley break; 1522e571a35bSMatthew G. Knepley } 1523649ef022SMatthew Knepley } 1524649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1525*4758e3ceSMatthew G. Knepley if (dm->nearnullspaceConstructors && dm->nearnullspaceConstructors[f]) { 15269566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15279566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15289566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1529e571a35bSMatthew G. Knepley } 1530e571a35bSMatthew G. Knepley } 1531e571a35bSMatthew G. Knepley } 15329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 153447c6ae99SBarry Smith } 153547c6ae99SBarry Smith 1536732e2eb9SMatthew G Knepley /*@ 1537a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1538a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1539a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1540aa0f6e3cSJed Brown 154120f4b53cSBarry Smith Logically Collective 1542aa0f6e3cSJed Brown 1543aa0f6e3cSJed Brown Input Parameters: 1544bb7acecfSBarry Smith + dm - the `DM` 1545bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1546aa0f6e3cSJed Brown 1547aa0f6e3cSJed Brown Level: developer 1548aa0f6e3cSJed Brown 154973ff1848SBarry Smith Note: 1550a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1551a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1552a4e35b19SJacob Faibussowitsch 15531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1554aa0f6e3cSJed Brown @*/ 1555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1556d71ae5a4SJacob Faibussowitsch { 1557aa0f6e3cSJed Brown PetscFunctionBegin; 1558aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1559aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1561aa0f6e3cSJed Brown } 1562aa0f6e3cSJed Brown 1563aa0f6e3cSJed Brown /*@ 1564bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1565732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1566732e2eb9SMatthew G Knepley 156720f4b53cSBarry Smith Logically Collective 1568732e2eb9SMatthew G Knepley 1569d8d19677SJose E. Roman Input Parameters: 1570bb7acecfSBarry Smith + dm - the `DM` 1571bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1572732e2eb9SMatthew G Knepley 157320f4b53cSBarry Smith Options Database Key: 1574bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1575f27dd7c6SMatthew G. Knepley 157620f4b53cSBarry Smith Level: developer 157720f4b53cSBarry Smith 15781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1579732e2eb9SMatthew G Knepley @*/ 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1581d71ae5a4SJacob Faibussowitsch { 1582732e2eb9SMatthew G Knepley PetscFunctionBegin; 1583732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1584732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1586732e2eb9SMatthew G Knepley } 1587732e2eb9SMatthew G Knepley 1588b06ff27eSHong Zhang /*@ 15890b4b7b1cSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created 1590bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1591b06ff27eSHong Zhang 159220f4b53cSBarry Smith Logically Collective 1593b06ff27eSHong Zhang 1594d8d19677SJose E. Roman Input Parameters: 1595bb7acecfSBarry Smith + dm - the `DM` 15960b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure 1597b06ff27eSHong Zhang 1598b06ff27eSHong Zhang Level: developer 1599bb7acecfSBarry Smith 16001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1601b06ff27eSHong Zhang @*/ 1602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1603d71ae5a4SJacob Faibussowitsch { 1604b06ff27eSHong Zhang PetscFunctionBegin; 1605b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1606b06ff27eSHong Zhang dm->structure_only = only; 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1608b06ff27eSHong Zhang } 1609b06ff27eSHong Zhang 1610863027abSJed Brown /*@ 1611863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1612863027abSJed Brown 161320f4b53cSBarry Smith Logically Collective 1614863027abSJed Brown 1615863027abSJed Brown Input Parameters: 1616863027abSJed Brown + dm - the `DM` 1617863027abSJed Brown - btype - block by topological point or field node 1618863027abSJed Brown 161920f4b53cSBarry Smith Options Database Key: 16200e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1621863027abSJed Brown 162220f4b53cSBarry Smith Level: advanced 162320f4b53cSBarry Smith 16241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1625863027abSJed Brown @*/ 1626863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1627863027abSJed Brown { 1628863027abSJed Brown PetscFunctionBegin; 1629863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1630863027abSJed Brown dm->blocking_type = btype; 16313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1632863027abSJed Brown } 1633863027abSJed Brown 1634863027abSJed Brown /*@ 1635863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1636863027abSJed Brown 1637863027abSJed Brown Not Collective 1638863027abSJed Brown 16392fe279fdSBarry Smith Input Parameter: 1640863027abSJed Brown . dm - the `DM` 1641863027abSJed Brown 16422fe279fdSBarry Smith Output Parameter: 1643863027abSJed Brown . btype - block by topological point or field node 1644863027abSJed Brown 1645863027abSJed Brown Level: advanced 1646863027abSJed Brown 16471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1648863027abSJed Brown @*/ 1649863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1650863027abSJed Brown { 1651863027abSJed Brown PetscFunctionBegin; 1652863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16534f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1654863027abSJed Brown *btype = dm->blocking_type; 16553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1656863027abSJed Brown } 1657863027abSJed Brown 1658a89ea682SMatthew G Knepley /*@C 1659bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1660a89ea682SMatthew G Knepley 1661a89ea682SMatthew G Knepley Not Collective 1662a89ea682SMatthew G Knepley 1663a89ea682SMatthew G Knepley Input Parameters: 1664bb7acecfSBarry Smith + dm - the `DM` object 1665a5b23f4aSJose E. Roman . count - The minimum size 166620f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1667a89ea682SMatthew G Knepley 1668a89ea682SMatthew G Knepley Output Parameter: 166960225df5SJacob Faibussowitsch . mem - the work array 1670a89ea682SMatthew G Knepley 1671a89ea682SMatthew G Knepley Level: developer 1672a89ea682SMatthew G Knepley 167373ff1848SBarry Smith Notes: 1674da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1675bb7acecfSBarry Smith 1676bb7acecfSBarry Smith The array may contain nonzero values 1677bb7acecfSBarry Smith 16781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1679a89ea682SMatthew G Knepley @*/ 1680d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1681d71ae5a4SJacob Faibussowitsch { 1682aa1993deSMatthew G Knepley DMWorkLink link; 168369291d52SBarry Smith PetscMPIInt dsize; 1684a89ea682SMatthew G Knepley 1685a89ea682SMatthew G Knepley PetscFunctionBegin; 1686a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16874f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1688442f3b32SStefano Zampini if (!count) { 1689442f3b32SStefano Zampini *(void **)mem = NULL; 1690442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1691442f3b32SStefano Zampini } 1692aa1993deSMatthew G Knepley if (dm->workin) { 1693aa1993deSMatthew G Knepley link = dm->workin; 1694aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1695aa1993deSMatthew G Knepley } else { 16964dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1697a89ea682SMatthew G Knepley } 1698b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1699b77fa653SStefano Zampini Get size directly */ 1700b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1701b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1702b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1703b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1704b77fa653SStefano Zampini #endif 1705b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1706b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1707b77fa653SStefano Zampini #endif 1708b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1709b77fa653SStefano Zampini 17105056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 17119566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 17129566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1713854ce69bSBarry Smith link->bytes = dsize * count; 1714aa1993deSMatthew G Knepley } 1715aa1993deSMatthew G Knepley link->next = dm->workout; 1716aa1993deSMatthew G Knepley dm->workout = link; 1717aa1993deSMatthew G Knepley *(void **)mem = link->mem; 17183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1719a89ea682SMatthew G Knepley } 1720a89ea682SMatthew G Knepley 1721aa1993deSMatthew G Knepley /*@C 1722bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1723aa1993deSMatthew G Knepley 1724aa1993deSMatthew G Knepley Not Collective 1725aa1993deSMatthew G Knepley 1726aa1993deSMatthew G Knepley Input Parameters: 1727bb7acecfSBarry Smith + dm - the `DM` object 1728a5b23f4aSJose E. Roman . count - The minimum size 172920f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1730aa1993deSMatthew G Knepley 1731aa1993deSMatthew G Knepley Output Parameter: 173260225df5SJacob Faibussowitsch . mem - the work array 1733aa1993deSMatthew G Knepley 1734aa1993deSMatthew G Knepley Level: developer 1735aa1993deSMatthew G Knepley 173673ff1848SBarry Smith Developer Note: 1737bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1738147403d9SBarry Smith 17391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1740aa1993deSMatthew G Knepley @*/ 1741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1742d71ae5a4SJacob Faibussowitsch { 1743aa1993deSMatthew G Knepley DMWorkLink *p, link; 1744aa1993deSMatthew G Knepley 1745aa1993deSMatthew G Knepley PetscFunctionBegin; 17464f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1747a4e35b19SJacob Faibussowitsch (void)count; 1748a4e35b19SJacob Faibussowitsch (void)dtype; 1749442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1750aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1751aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1752aa1993deSMatthew G Knepley *p = link->next; 1753aa1993deSMatthew G Knepley link->next = dm->workin; 1754aa1993deSMatthew G Knepley dm->workin = link; 17550298fd71SBarry Smith *(void **)mem = NULL; 17563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1757aa1993deSMatthew G Knepley } 1758aa1993deSMatthew G Knepley } 1759aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1760aa1993deSMatthew G Knepley } 1761e7c4fc90SDmitry Karpeev 17628cda7954SMatthew G. Knepley /*@C 1763bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1764bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17658cda7954SMatthew G. Knepley 176620f4b53cSBarry Smith Logically Collective; No Fortran Support 17678cda7954SMatthew G. Knepley 17688cda7954SMatthew G. Knepley Input Parameters: 1769bb7acecfSBarry Smith + dm - The `DM` 17708cda7954SMatthew G. Knepley . field - The field number for the nullspace 17718cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17728cda7954SMatthew G. Knepley 177320f4b53cSBarry Smith Calling sequence of `nullsp`: 1774bb7acecfSBarry Smith + dm - The present `DM` 1775bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1776147403d9SBarry Smith . field - The field number in dm 1777147403d9SBarry Smith - nullSpace - The nullspace for the given field 17788cda7954SMatthew G. Knepley 177949762cbcSSatish Balay Level: intermediate 178049762cbcSSatish Balay 17811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1782147403d9SBarry Smith @*/ 1783a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1784d71ae5a4SJacob Faibussowitsch { 1785435a35e8SMatthew G Knepley PetscFunctionBegin; 1786435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1787*4758e3ceSMatthew G. Knepley PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf); 1788*4758e3ceSMatthew G. Knepley PetscCheck(dm->nullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces"); 1789435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1791435a35e8SMatthew G Knepley } 1792435a35e8SMatthew G Knepley 17938cda7954SMatthew G. Knepley /*@C 1794bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17958cda7954SMatthew G. Knepley 179620f4b53cSBarry Smith Not Collective; No Fortran Support 17978cda7954SMatthew G. Knepley 17988cda7954SMatthew G. Knepley Input Parameters: 1799bb7acecfSBarry Smith + dm - The `DM` 18008cda7954SMatthew G. Knepley - field - The field number for the nullspace 18018cda7954SMatthew G. Knepley 18028cda7954SMatthew G. Knepley Output Parameter: 18038cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 18048cda7954SMatthew G. Knepley 180520f4b53cSBarry Smith Calling sequence of `nullsp`: 1806147403d9SBarry Smith + dm - The present DM 1807147403d9SBarry Smith . origField - The field number given above, in the original DM 1808147403d9SBarry Smith . field - The field number in dm 1809147403d9SBarry Smith - nullSpace - The nullspace for the given field 18108cda7954SMatthew G. Knepley 181149762cbcSSatish Balay Level: intermediate 181249762cbcSSatish Balay 18131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1814147403d9SBarry Smith @*/ 1815a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1816d71ae5a4SJacob Faibussowitsch { 18170a50eb56SMatthew G. Knepley PetscFunctionBegin; 18180a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18194f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 1820*4758e3ceSMatthew G. Knepley PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf); 1821*4758e3ceSMatthew G. Knepley PetscCheck(dm->nullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces"); 18220a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18240a50eb56SMatthew G. Knepley } 18250a50eb56SMatthew G. Knepley 18268cda7954SMatthew G. Knepley /*@C 1827bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18288cda7954SMatthew G. Knepley 182920f4b53cSBarry Smith Logically Collective; No Fortran Support 18308cda7954SMatthew G. Knepley 18318cda7954SMatthew G. Knepley Input Parameters: 1832bb7acecfSBarry Smith + dm - The `DM` 18338cda7954SMatthew G. Knepley . field - The field number for the nullspace 18348cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18358cda7954SMatthew G. Knepley 183620f4b53cSBarry Smith Calling sequence of `nullsp`: 1837bb7acecfSBarry Smith + dm - The present `DM` 1838bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1839147403d9SBarry Smith . field - The field number in dm 1840147403d9SBarry Smith - nullSpace - The nullspace for the given field 18418cda7954SMatthew G. Knepley 184249762cbcSSatish Balay Level: intermediate 184349762cbcSSatish Balay 18441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1845bb7acecfSBarry Smith `MatNullSpace` 1846147403d9SBarry Smith @*/ 1847a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1848d71ae5a4SJacob Faibussowitsch { 1849f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1850f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1851*4758e3ceSMatthew G. Knepley PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf); 1852*4758e3ceSMatthew G. Knepley PetscCheck(dm->nearnullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces"); 1853f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1855f9d4088aSMatthew G. Knepley } 1856f9d4088aSMatthew G. Knepley 18578cda7954SMatthew G. Knepley /*@C 1858bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18598cda7954SMatthew G. Knepley 186020f4b53cSBarry Smith Not Collective; No Fortran Support 18618cda7954SMatthew G. Knepley 18628cda7954SMatthew G. Knepley Input Parameters: 1863bb7acecfSBarry Smith + dm - The `DM` 18648cda7954SMatthew G. Knepley - field - The field number for the nullspace 18658cda7954SMatthew G. Knepley 18668cda7954SMatthew G. Knepley Output Parameter: 18678cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18688cda7954SMatthew G. Knepley 186920f4b53cSBarry Smith Calling sequence of `nullsp`: 1870bb7acecfSBarry Smith + dm - The present `DM` 1871bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1872147403d9SBarry Smith . field - The field number in dm 1873147403d9SBarry Smith - nullSpace - The nullspace for the given field 18748cda7954SMatthew G. Knepley 187549762cbcSSatish Balay Level: intermediate 187649762cbcSSatish Balay 18771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1878bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1879147403d9SBarry Smith @*/ 1880a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1881d71ae5a4SJacob Faibussowitsch { 1882f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1883f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18844f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 1885*4758e3ceSMatthew G. Knepley PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf); 1886*4758e3ceSMatthew G. Knepley PetscCheck(dm->nearnullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces"); 1887f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1889f9d4088aSMatthew G. Knepley } 1890f9d4088aSMatthew G. Knepley 18914f3b5142SJed Brown /*@C 1892bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18934d343eeaSMatthew G Knepley 189420f4b53cSBarry Smith Not Collective; No Fortran Support 18954d343eeaSMatthew G Knepley 18964d343eeaSMatthew G Knepley Input Parameter: 1897bb7acecfSBarry Smith . dm - the `DM` object 18984d343eeaSMatthew G Knepley 18994d343eeaSMatthew G Knepley Output Parameters: 190020f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 1901ce78bad3SBarry Smith . fieldNames - The name of each field (or `NULL` if not requested) 190220f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 19034d343eeaSMatthew G Knepley 19044d343eeaSMatthew G Knepley Level: intermediate 19054d343eeaSMatthew G Knepley 1906bb7acecfSBarry Smith Note: 190773ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 190873ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1909bb7acecfSBarry Smith `PetscFree()`. 191021c9b008SJed Brown 191173ff1848SBarry Smith Developer Note: 1912bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1913bb7acecfSBarry Smith likely be removed. 1914bb7acecfSBarry Smith 19151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1916bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 19174d343eeaSMatthew G Knepley @*/ 1918ce78bad3SBarry Smith PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS *fields[]) 1919d71ae5a4SJacob Faibussowitsch { 192037d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 19214d343eeaSMatthew G Knepley 19224d343eeaSMatthew G Knepley PetscFunctionBegin; 19234d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 192469ca1f37SDmitry Karpeev if (numFields) { 19254f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 192669ca1f37SDmitry Karpeev *numFields = 0; 192769ca1f37SDmitry Karpeev } 192837d0c07bSMatthew G Knepley if (fieldNames) { 19294f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19300298fd71SBarry Smith *fieldNames = NULL; 193169ca1f37SDmitry Karpeev } 193269ca1f37SDmitry Karpeev if (fields) { 19334f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19340298fd71SBarry Smith *fields = NULL; 193569ca1f37SDmitry Karpeev } 19369566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 193737d0c07bSMatthew G Knepley if (section) { 19383a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 193937d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 194037d0c07bSMatthew G Knepley 19419566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19439566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 194537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 194637d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19479566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 194837d0c07bSMatthew G Knepley } 194937d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 195037d0c07bSMatthew G Knepley PetscInt gdof; 195137d0c07bSMatthew G Knepley 19529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195337d0c07bSMatthew G Knepley if (gdof > 0) { 195437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19553a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 195637d0c07bSMatthew G Knepley 19579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19593a544194SStefano Zampini fpdof = fdof - fcdof; 19603a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19613a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19623a544194SStefano Zampini fieldNc[f] = 1; 19633a544194SStefano Zampini } 19643a544194SStefano Zampini fieldSizes[f] += fpdof; 196537d0c07bSMatthew G Knepley } 196637d0c07bSMatthew G Knepley } 196737d0c07bSMatthew G Knepley } 196837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 197037d0c07bSMatthew G Knepley fieldSizes[f] = 0; 197137d0c07bSMatthew G Knepley } 197237d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 197337d0c07bSMatthew G Knepley PetscInt gdof, goff; 197437d0c07bSMatthew G Knepley 19759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 197637d0c07bSMatthew G Knepley if (gdof > 0) { 19779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 197837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 197937d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 198037d0c07bSMatthew G Knepley 19819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1983ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 198437d0c07bSMatthew G Knepley } 198537d0c07bSMatthew G Knepley } 198637d0c07bSMatthew G Knepley } 19878865f1eaSKarl Rupp if (numFields) *numFields = nF; 198837d0c07bSMatthew G Knepley if (fieldNames) { 19899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 199037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 199137d0c07bSMatthew G Knepley const char *fieldName; 199237d0c07bSMatthew G Knepley 19939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 1994835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f])); 199537d0c07bSMatthew G Knepley } 199637d0c07bSMatthew G Knepley } 199737d0c07bSMatthew G Knepley if (fields) { 19989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 199937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 20003a544194SStefano Zampini PetscInt bs, in[2], out[2]; 20013a544194SStefano Zampini 20029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 20033a544194SStefano Zampini in[0] = -fieldNc[f]; 20043a544194SStefano Zampini in[1] = fieldNc[f]; 2005462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 20063a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 20079566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 200837d0c07bSMatthew G Knepley } 200937d0c07bSMatthew G Knepley } 20109566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 2011dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20134d343eeaSMatthew G Knepley } 20144d343eeaSMatthew G Knepley 201516621825SDmitry Karpeev /*@C 2016bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 2017a4e35b19SJacob Faibussowitsch corresponding to different fields. 2018e7c4fc90SDmitry Karpeev 201920f4b53cSBarry Smith Not Collective; No Fortran Support 2020e7c4fc90SDmitry Karpeev 2021e7c4fc90SDmitry Karpeev Input Parameter: 2022bb7acecfSBarry Smith . dm - the `DM` object 2023e7c4fc90SDmitry Karpeev 2024e7c4fc90SDmitry Karpeev Output Parameters: 202520f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 202620f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 202720f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 202820f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2029e7c4fc90SDmitry Karpeev 2030e7c4fc90SDmitry Karpeev Level: intermediate 2031e7c4fc90SDmitry Karpeev 2032a4e35b19SJacob Faibussowitsch Notes: 2033a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2034a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2035a4e35b19SJacob Faibussowitsch 2036a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2037a4e35b19SJacob Faibussowitsch 203873ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 203973ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2040bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2041e7c4fc90SDmitry Karpeev 20428d9ecca5SBarry Smith Fortran Notes: 20438d9ecca5SBarry Smith Use the declarations 20448d9ecca5SBarry Smith .vb 20458d9ecca5SBarry Smith character(80), pointer :: namelist(:) 20468d9ecca5SBarry Smith IS, pointer :: islist(:) 20478d9ecca5SBarry Smith DM, pointer :: dmlist(:) 20488d9ecca5SBarry Smith .ve 20498d9ecca5SBarry Smith 20508d9ecca5SBarry Smith `namelist` must be provided, `islist` may be `PETSC_NULL_IS_POINTER` and `dmlist` may be `PETSC_NULL_DM_POINTER` 20518d9ecca5SBarry Smith 20528d9ecca5SBarry Smith Use `DMDestroyFieldDecomposition()` to free the returned objects 20538d9ecca5SBarry Smith 205460225df5SJacob Faibussowitsch Developer Notes: 2055bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2056bb7acecfSBarry Smith 205773ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 205873ff1848SBarry Smith decomposition is computed. 205973ff1848SBarry Smith 206073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2061e7c4fc90SDmitry Karpeev @*/ 2062ce78bad3SBarry Smith PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS *islist[], DM *dmlist[]) 2063d71ae5a4SJacob Faibussowitsch { 2064e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2065e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20668865f1eaSKarl Rupp if (len) { 20674f572ea9SToby Isaac PetscAssertPointer(len, 2); 20688865f1eaSKarl Rupp *len = 0; 20698865f1eaSKarl Rupp } 20708865f1eaSKarl Rupp if (namelist) { 20714f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2072ea78f98cSLisandro Dalcin *namelist = NULL; 20738865f1eaSKarl Rupp } 20748865f1eaSKarl Rupp if (islist) { 20754f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2076ea78f98cSLisandro Dalcin *islist = NULL; 20778865f1eaSKarl Rupp } 20788865f1eaSKarl Rupp if (dmlist) { 20794f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2080ea78f98cSLisandro Dalcin *dmlist = NULL; 20818865f1eaSKarl Rupp } 2082f3f0edfdSDmitry Karpeev /* 2083f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2084f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2085f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2086f3f0edfdSDmitry Karpeev */ 20877a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 208816621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2089435a35e8SMatthew G Knepley PetscSection section; 2090435a35e8SMatthew G Knepley PetscInt numFields, f; 2091435a35e8SMatthew G Knepley 20929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20939566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2094435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2095f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20969566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20979566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20989566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2099435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2100435a35e8SMatthew G Knepley const char *fieldName; 2101435a35e8SMatthew G Knepley 21029566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 210303dc3394SMatthew G. Knepley if (namelist) { 21049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 2105835f2295SStefano Zampini PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f])); 2106435a35e8SMatthew G Knepley } 210703dc3394SMatthew G. Knepley } 2108435a35e8SMatthew G Knepley } else { 21099566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2110e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 21110298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2112e7c4fc90SDmitry Karpeev } 2113dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 21143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 211516621825SDmitry Karpeev } 211616621825SDmitry Karpeev 21175d83a8b1SBarry Smith /*@ 211820f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 211920f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2120435a35e8SMatthew G Knepley 2121435a35e8SMatthew G Knepley Not collective 2122435a35e8SMatthew G Knepley 2123435a35e8SMatthew G Knepley Input Parameters: 2124bb7acecfSBarry Smith + dm - The `DM` object 2125bb7acecfSBarry Smith . numFields - The number of fields to select 21262adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2127435a35e8SMatthew G Knepley 2128435a35e8SMatthew G Knepley Output Parameters: 2129b6971eaeSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed 2130b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed 2131435a35e8SMatthew G Knepley 213220f4b53cSBarry Smith Level: intermediate 213320f4b53cSBarry Smith 2134bb7acecfSBarry Smith Note: 2135bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21365d3b26e6SMatthew G. Knepley 213760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2138435a35e8SMatthew G Knepley @*/ 2139d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2140d71ae5a4SJacob Faibussowitsch { 2141435a35e8SMatthew G Knepley PetscFunctionBegin; 2142435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21434f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21444f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21454f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2146dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2148435a35e8SMatthew G Knepley } 2149435a35e8SMatthew G Knepley 21502adcc780SMatthew G. Knepley /*@C 2151ce78bad3SBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and a single `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21522adcc780SMatthew G. Knepley 21532adcc780SMatthew G. Knepley Not collective 21542adcc780SMatthew G. Knepley 2155d8d19677SJose E. Roman Input Parameters: 2156bb7acecfSBarry Smith + dms - The `DM` objects 2157bb7acecfSBarry Smith - n - The number of `DM`s 21582adcc780SMatthew G. Knepley 21592adcc780SMatthew G. Knepley Output Parameters: 2160ce78bad3SBarry Smith + is - The global indices for each of subproblem within the super `DM`, or `NULL`, its length is `n` 2161bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21622adcc780SMatthew G. Knepley 216320f4b53cSBarry Smith Level: intermediate 216420f4b53cSBarry Smith 2165bb7acecfSBarry Smith Note: 2166bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21675d3b26e6SMatthew G. Knepley 216873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21692adcc780SMatthew G. Knepley @*/ 21705d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm) 2171d71ae5a4SJacob Faibussowitsch { 21722adcc780SMatthew G. Knepley PetscInt i; 21732adcc780SMatthew G. Knepley 21742adcc780SMatthew G. Knepley PetscFunctionBegin; 21754f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2176ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21774f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21784f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2179bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2180bb7acecfSBarry Smith if (n) { 2181b9d85ea2SLisandro Dalcin DM dm = dms[0]; 218200045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2183dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21842adcc780SMatthew G. Knepley } 21853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21862adcc780SMatthew G. Knepley } 21872adcc780SMatthew G. Knepley 218816621825SDmitry Karpeev /*@C 2189a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2190a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 219116621825SDmitry Karpeev 219220f4b53cSBarry Smith Not Collective 219316621825SDmitry Karpeev 219416621825SDmitry Karpeev Input Parameter: 2195bb7acecfSBarry Smith . dm - the `DM` object 219616621825SDmitry Karpeev 219716621825SDmitry Karpeev Output Parameters: 2198ce78bad3SBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested), also the length of the four arrays below 219920f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 220073ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 220173ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 220273ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 220316621825SDmitry Karpeev 220416621825SDmitry Karpeev Level: intermediate 220516621825SDmitry Karpeev 220673ff1848SBarry Smith Notes: 2207a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2208a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2209a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2210a4e35b19SJacob Faibussowitsch 2211a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2212a4e35b19SJacob Faibussowitsch 221373ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 221473ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2215bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 221616621825SDmitry Karpeev 2217a4e35b19SJacob Faibussowitsch Developer Notes: 221820f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2219bb7acecfSBarry Smith 222073ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 222173ff1848SBarry Smith 222273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 222373ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 222416621825SDmitry Karpeev @*/ 2225ce78bad3SBarry Smith PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS *innerislist[], IS *outerislist[], DM *dmlist[]) 2226d71ae5a4SJacob Faibussowitsch { 2227be081cd6SPeter Brune DMSubDomainHookLink link; 2228be081cd6SPeter Brune PetscInt i, l; 222916621825SDmitry Karpeev 223016621825SDmitry Karpeev PetscFunctionBegin; 223116621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22329371c9d4SSatish Balay if (n) { 22334f572ea9SToby Isaac PetscAssertPointer(n, 2); 22349371c9d4SSatish Balay *n = 0; 22359371c9d4SSatish Balay } 22369371c9d4SSatish Balay if (namelist) { 22374f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22389371c9d4SSatish Balay *namelist = NULL; 22399371c9d4SSatish Balay } 22409371c9d4SSatish Balay if (innerislist) { 22414f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22429371c9d4SSatish Balay *innerislist = NULL; 22439371c9d4SSatish Balay } 22449371c9d4SSatish Balay if (outerislist) { 22454f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22469371c9d4SSatish Balay *outerislist = NULL; 22479371c9d4SSatish Balay } 22489371c9d4SSatish Balay if (dmlist) { 22494f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22509371c9d4SSatish Balay *dmlist = NULL; 22519371c9d4SSatish Balay } 2252f3f0edfdSDmitry Karpeev /* 2253f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2254f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2255f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2256f3f0edfdSDmitry Karpeev */ 22577a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 225816621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2259dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 226014a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2261f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2262be081cd6SPeter Brune for (i = 0; i < l; i++) { 2263be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22649566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2265be081cd6SPeter Brune } 2266648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2267e7c4fc90SDmitry Karpeev } 226814a18fd3SPeter Brune } 2269bb7acecfSBarry Smith if (n) *n = l; 227014a18fd3SPeter Brune } 22713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2272e30e807fSPeter Brune } 2273e30e807fSPeter Brune 2274e30e807fSPeter Brune /*@C 227573ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 227673ff1848SBarry Smith `DMCreateDomainDecomposition()` 2277e30e807fSPeter Brune 227820f4b53cSBarry Smith Not Collective 2279e30e807fSPeter Brune 2280e30e807fSPeter Brune Input Parameters: 2281bb7acecfSBarry Smith + dm - the `DM` object 228273ff1848SBarry Smith . n - the number of subdomains 2283e30e807fSPeter Brune - subdms - the local subdomains 2284e30e807fSPeter Brune 2285e30e807fSPeter Brune Output Parameters: 22866b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2287e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2288e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2289e30e807fSPeter Brune 229020f4b53cSBarry Smith Level: developer 229120f4b53cSBarry Smith 2292bb7acecfSBarry Smith Note: 2293bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2294e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2295e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2296e30e807fSPeter Brune solution and residual data. 2297e30e807fSPeter Brune 229873ff1848SBarry Smith Developer Note: 2299a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2300a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2301bb7acecfSBarry Smith 23021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2303e30e807fSPeter Brune @*/ 23045d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[]) 2305d71ae5a4SJacob Faibussowitsch { 2306e30e807fSPeter Brune PetscFunctionBegin; 2307e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23084f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2309dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 23103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2311e7c4fc90SDmitry Karpeev } 2312e7c4fc90SDmitry Karpeev 231347c6ae99SBarry Smith /*@ 2314bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 231547c6ae99SBarry Smith 231620f4b53cSBarry Smith Collective 231747c6ae99SBarry Smith 2318d8d19677SJose E. Roman Input Parameters: 2319bb7acecfSBarry Smith + dm - the `DM` object 2320bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 232147c6ae99SBarry Smith 232247c6ae99SBarry Smith Output Parameter: 232320f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2324ae0a1c52SMatthew G Knepley 232520f4b53cSBarry Smith Options Database Key: 2326412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2327412e9a14SMatthew G. Knepley 232847c6ae99SBarry Smith Level: developer 232947c6ae99SBarry Smith 233020f4b53cSBarry Smith Note: 233120f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 233220f4b53cSBarry Smith 233373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 233473ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 233547c6ae99SBarry Smith @*/ 2336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2337d71ae5a4SJacob Faibussowitsch { 2338c833c3b5SJed Brown DMRefineHookLink link; 233947c6ae99SBarry Smith 234047c6ae99SBarry Smith PetscFunctionBegin; 2341732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2343dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23444057135bSMatthew G Knepley if (*dmf) { 234543842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23468865f1eaSKarl Rupp 23479566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23488865f1eaSKarl Rupp 2349644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23500598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2351656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23528865f1eaSKarl Rupp 23539566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2354c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23551baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2356c833c3b5SJed Brown } 2357c833c3b5SJed Brown } 23589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2360c833c3b5SJed Brown } 2361c833c3b5SJed Brown 2362bb9467b5SJed Brown /*@C 2363c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2364c833c3b5SJed Brown 236520f4b53cSBarry Smith Logically Collective; No Fortran Support 2366c833c3b5SJed Brown 23674165533cSJose E. Roman Input Parameters: 2368bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2369bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2370f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 237120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2372c833c3b5SJed Brown 237320f4b53cSBarry Smith Calling sequence of `refinehook`: 2374bb7acecfSBarry Smith + coarse - coarse level `DM` 2375bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2376c833c3b5SJed Brown - ctx - optional user-defined function context 2377c833c3b5SJed Brown 237820f4b53cSBarry Smith Calling sequence of `interphook`: 2379bb7acecfSBarry Smith + coarse - coarse level `DM` 2380c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2381bb7acecfSBarry Smith . fine - fine level `DM` to update 2382c833c3b5SJed Brown - ctx - optional user-defined function context 2383c833c3b5SJed Brown 2384c833c3b5SJed Brown Level: advanced 2385c833c3b5SJed Brown 2386c833c3b5SJed Brown Notes: 2387bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2388bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2389bb7acecfSBarry Smith 2390bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2391c833c3b5SJed Brown 2392c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2393c833c3b5SJed Brown 23941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2395c833c3b5SJed Brown @*/ 2396a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2397d71ae5a4SJacob Faibussowitsch { 2398c833c3b5SJed Brown DMRefineHookLink link, *p; 2399c833c3b5SJed Brown 2400c833c3b5SJed Brown PetscFunctionBegin; 2401c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24023d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 24033ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 24043d8e3701SJed Brown } 24059566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2406c833c3b5SJed Brown link->refinehook = refinehook; 2407c833c3b5SJed Brown link->interphook = interphook; 2408c833c3b5SJed Brown link->ctx = ctx; 24090298fd71SBarry Smith link->next = NULL; 2410c833c3b5SJed Brown *p = link; 24113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2412c833c3b5SJed Brown } 2413c833c3b5SJed Brown 24143d8e3701SJed Brown /*@C 2415bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2416bb7acecfSBarry Smith a nonlinear problem to a finer grid 24173d8e3701SJed Brown 241820f4b53cSBarry Smith Logically Collective; No Fortran Support 24193d8e3701SJed Brown 24204165533cSJose E. Roman Input Parameters: 2421bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2422bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2423bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 242420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 24253d8e3701SJed Brown 24263d8e3701SJed Brown Level: advanced 24273d8e3701SJed Brown 2428bb7acecfSBarry Smith Note: 24293d8e3701SJed Brown This function does nothing if the hook is not in the list. 24303d8e3701SJed Brown 24311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 24323d8e3701SJed Brown @*/ 2433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2434d71ae5a4SJacob Faibussowitsch { 24353d8e3701SJed Brown DMRefineHookLink link, *p; 24363d8e3701SJed Brown 24373d8e3701SJed Brown PetscFunctionBegin; 24383d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24393d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24403d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24413d8e3701SJed Brown link = *p; 24423d8e3701SJed Brown *p = link->next; 24439566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24443d8e3701SJed Brown break; 24453d8e3701SJed Brown } 24463d8e3701SJed Brown } 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24483d8e3701SJed Brown } 24493d8e3701SJed Brown 2450c833c3b5SJed Brown /*@ 2451bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2452c833c3b5SJed Brown 2453c833c3b5SJed Brown Collective if any hooks are 2454c833c3b5SJed Brown 24554165533cSJose E. Roman Input Parameters: 2456bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2457bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2458bb7acecfSBarry Smith - fine - finer `DM` to update 2459c833c3b5SJed Brown 2460c833c3b5SJed Brown Level: developer 2461c833c3b5SJed Brown 246273ff1848SBarry Smith Developer Note: 2463bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2464bb7acecfSBarry Smith an API with consistent terminology. 2465bb7acecfSBarry Smith 24661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2467c833c3b5SJed Brown @*/ 2468d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2469d71ae5a4SJacob Faibussowitsch { 2470c833c3b5SJed Brown DMRefineHookLink link; 2471c833c3b5SJed Brown 2472c833c3b5SJed Brown PetscFunctionBegin; 2473c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24741baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24754057135bSMatthew G Knepley } 24763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 247747c6ae99SBarry Smith } 247847c6ae99SBarry Smith 2479eb3f98d2SBarry Smith /*@ 24801f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24811f3379b2SToby Isaac 248220f4b53cSBarry Smith Collective 24831f3379b2SToby Isaac 24844165533cSJose E. Roman Input Parameters: 2485bb7acecfSBarry Smith + coarse - coarse `DM` 2486bb7acecfSBarry Smith . fine - fine `DM` 2487bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2488bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2489bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24901f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24911f3379b2SToby Isaac 24924165533cSJose E. Roman Output Parameter: 24931f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24941f3379b2SToby Isaac 24951f3379b2SToby Isaac Level: developer 24961f3379b2SToby Isaac 2497bb7acecfSBarry Smith Note: 2498bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24991f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 25001f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 25011f3379b2SToby Isaac slope-limiting reconstruction. 25021f3379b2SToby Isaac 250373ff1848SBarry Smith Developer Note: 2504bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2505bb7acecfSBarry Smith 25061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 25071f3379b2SToby Isaac @*/ 2508d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2509d71ae5a4SJacob Faibussowitsch { 25101f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 25111f3379b2SToby Isaac 25121f3379b2SToby Isaac PetscFunctionBegin; 25131f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 25141f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 25151f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 25161f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 25171f3379b2SToby Isaac 25189566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 25191f3379b2SToby Isaac if (interpsol) { 25209566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 25211f3379b2SToby Isaac } else if (interp) { 25229566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 252398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 25243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25251f3379b2SToby Isaac } 25261f3379b2SToby Isaac 25271f3379b2SToby Isaac /*@ 2528bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2529eb3f98d2SBarry Smith 2530eb3f98d2SBarry Smith Not Collective 2531eb3f98d2SBarry Smith 2532eb3f98d2SBarry Smith Input Parameter: 2533bb7acecfSBarry Smith . dm - the `DM` object 2534eb3f98d2SBarry Smith 2535eb3f98d2SBarry Smith Output Parameter: 2536eb3f98d2SBarry Smith . level - number of refinements 2537eb3f98d2SBarry Smith 2538eb3f98d2SBarry Smith Level: developer 2539eb3f98d2SBarry Smith 2540bb7acecfSBarry Smith Note: 2541bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2542bb7acecfSBarry Smith 25431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2544eb3f98d2SBarry Smith @*/ 2545d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2546d71ae5a4SJacob Faibussowitsch { 2547eb3f98d2SBarry Smith PetscFunctionBegin; 2548eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2549eb3f98d2SBarry Smith *level = dm->levelup; 25503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2551eb3f98d2SBarry Smith } 2552eb3f98d2SBarry Smith 2553fef3a512SBarry Smith /*@ 2554bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2555fef3a512SBarry Smith 2556fef3a512SBarry Smith Not Collective 2557fef3a512SBarry Smith 2558d8d19677SJose E. Roman Input Parameters: 2559bb7acecfSBarry Smith + dm - the `DM` object 2560fef3a512SBarry Smith - level - number of refinements 2561fef3a512SBarry Smith 2562fef3a512SBarry Smith Level: advanced 2563fef3a512SBarry Smith 256495452b02SPatrick Sanan Notes: 2565bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2566fef3a512SBarry Smith 2567bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2568bb7acecfSBarry Smith 25691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2570fef3a512SBarry Smith @*/ 2571d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2572d71ae5a4SJacob Faibussowitsch { 2573fef3a512SBarry Smith PetscFunctionBegin; 2574fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2575fef3a512SBarry Smith dm->levelup = level; 25763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2577fef3a512SBarry Smith } 2578fef3a512SBarry Smith 2579d410b0cfSMatthew G. Knepley /*@ 2580bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2581d410b0cfSMatthew G. Knepley 258220f4b53cSBarry Smith Collective 2583d410b0cfSMatthew G. Knepley 2584f1a722f8SMatthew G. Knepley Input Parameters: 2585bb7acecfSBarry Smith + dm - the `DM` object 2586d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2587d410b0cfSMatthew G. Knepley 2588d410b0cfSMatthew G. Knepley Output Parameter: 258920f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2590d410b0cfSMatthew G. Knepley 2591d410b0cfSMatthew G. Knepley Level: developer 2592d410b0cfSMatthew G. Knepley 259320f4b53cSBarry Smith Note: 259420f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 259520f4b53cSBarry Smith 25961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2597d410b0cfSMatthew G. Knepley @*/ 2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2599d71ae5a4SJacob Faibussowitsch { 2600d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2601d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2602dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2603d410b0cfSMatthew G. Knepley if (*dme) { 2604d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 26059566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2606d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 26079566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2608d410b0cfSMatthew G. Knepley } 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610d410b0cfSMatthew G. Knepley } 2611d410b0cfSMatthew G. Knepley 2612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2613d71ae5a4SJacob Faibussowitsch { 2614ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2615ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26164f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2617ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 26183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2619ca3d3a14SMatthew G. Knepley } 2620ca3d3a14SMatthew G. Knepley 2621d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2622d71ae5a4SJacob Faibussowitsch { 2623ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2624ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26254f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2626ca3d3a14SMatthew G. Knepley *tv = dm->transform; 26273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2628ca3d3a14SMatthew G. Knepley } 2629ca3d3a14SMatthew G. Knepley 2630ca3d3a14SMatthew G. Knepley /*@ 2631bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2632ca3d3a14SMatthew G. Knepley 2633ca3d3a14SMatthew G. Knepley Input Parameter: 263420f4b53cSBarry Smith . dm - The `DM` 2635ca3d3a14SMatthew G. Knepley 2636ca3d3a14SMatthew G. Knepley Output Parameter: 263720f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2638ca3d3a14SMatthew G. Knepley 2639ca3d3a14SMatthew G. Knepley Level: developer 2640ca3d3a14SMatthew G. Knepley 26411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2642ca3d3a14SMatthew G. Knepley @*/ 2643d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2644d71ae5a4SJacob Faibussowitsch { 2645ca3d3a14SMatthew G. Knepley Vec tv; 2646ca3d3a14SMatthew G. Knepley 2647ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2648ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26494f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26509566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2651ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2653ca3d3a14SMatthew G. Knepley } 2654ca3d3a14SMatthew G. Knepley 2655d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2656d71ae5a4SJacob Faibussowitsch { 2657ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2658ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2659ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2660ca3d3a14SMatthew G. Knepley 2661ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26629566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26639566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26669566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26689566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2670ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2672ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2673ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2674ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2676ca3d3a14SMatthew G. Knepley if (!dof) continue; 26779566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26789566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2679ca3d3a14SMatthew G. Knepley } 2680ca3d3a14SMatthew G. Knepley } 26819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26829566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26839566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2684ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2685ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2687ca3d3a14SMatthew G. Knepley if (dof) { 2688ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2689ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2690ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2691ca3d3a14SMatthew G. Knepley 2692ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26939566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26949566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2696ca3d3a14SMatthew G. Knepley } 2697ca3d3a14SMatthew G. Knepley } 2698ca3d3a14SMatthew G. Knepley } 26999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 27003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2701ca3d3a14SMatthew G. Knepley } 2702ca3d3a14SMatthew G. Knepley 2703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2704d71ae5a4SJacob Faibussowitsch { 2705ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2706ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2707ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2708ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2709ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2710ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2711ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 27129566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 27133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2714ca3d3a14SMatthew G. Knepley } 2715ca3d3a14SMatthew G. Knepley 2716bb9467b5SJed Brown /*@C 2717bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2718baf369e7SPeter Brune 271920f4b53cSBarry Smith Logically Collective 2720baf369e7SPeter Brune 27214165533cSJose E. Roman Input Parameters: 2722bb7acecfSBarry Smith + dm - the `DM` 2723bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2724bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 272520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2726baf369e7SPeter Brune 272720f4b53cSBarry Smith Calling sequence of `beginhook`: 2728a4e35b19SJacob Faibussowitsch + dm - global `DM` 2729baf369e7SPeter Brune . g - global vector 2730baf369e7SPeter Brune . mode - mode 2731baf369e7SPeter Brune . l - local vector 2732baf369e7SPeter Brune - ctx - optional user-defined function context 2733baf369e7SPeter Brune 273420f4b53cSBarry Smith Calling sequence of `endhook`: 2735a4e35b19SJacob Faibussowitsch + dm - global `DM` 2736a4e35b19SJacob Faibussowitsch . g - global vector 2737a4e35b19SJacob Faibussowitsch . mode - mode 2738a4e35b19SJacob Faibussowitsch . l - local vector 2739baf369e7SPeter Brune - ctx - optional user-defined function context 2740baf369e7SPeter Brune 2741baf369e7SPeter Brune Level: advanced 2742baf369e7SPeter Brune 2743bb7acecfSBarry Smith Note: 2744bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2745bb7acecfSBarry Smith 27461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2747baf369e7SPeter Brune @*/ 2748a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2749d71ae5a4SJacob Faibussowitsch { 2750baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2751baf369e7SPeter Brune 2752baf369e7SPeter Brune PetscFunctionBegin; 2753baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2754baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27559566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2756baf369e7SPeter Brune link->beginhook = beginhook; 2757baf369e7SPeter Brune link->endhook = endhook; 2758baf369e7SPeter Brune link->ctx = ctx; 27590298fd71SBarry Smith link->next = NULL; 2760baf369e7SPeter Brune *p = link; 27613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2762baf369e7SPeter Brune } 2763baf369e7SPeter Brune 2764d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2765d71ae5a4SJacob Faibussowitsch { 27664c274da1SToby Isaac Mat cMat; 276779769bd5SJed Brown Vec cVec, cBias; 27684c274da1SToby Isaac PetscSection section, cSec; 27694c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27704c274da1SToby Isaac 27714c274da1SToby Isaac PetscFunctionBegin; 2772a4e35b19SJacob Faibussowitsch (void)g; 2773a4e35b19SJacob Faibussowitsch (void)ctx; 27744c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27759566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27764c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27775db9a05bSToby Isaac PetscInt nRows; 27785db9a05bSToby Isaac 27799566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27803ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27819566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27829566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27839566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27849566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27864c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27884c274da1SToby Isaac if (dof) { 27894c274da1SToby Isaac PetscScalar *vals; 27909566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27919566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27924c274da1SToby Isaac } 27934c274da1SToby Isaac } 27949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27954c274da1SToby Isaac } 27963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27974c274da1SToby Isaac } 27984c274da1SToby Isaac 279947c6ae99SBarry Smith /*@ 280001729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 280101729b5cSPatrick Sanan 280220f4b53cSBarry Smith Neighbor-wise Collective 280301729b5cSPatrick Sanan 280401729b5cSPatrick Sanan Input Parameters: 2805bb7acecfSBarry Smith + dm - the `DM` object 280601729b5cSPatrick Sanan . g - the global vector 2807bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 280801729b5cSPatrick Sanan - l - the local vector 280901729b5cSPatrick Sanan 281020f4b53cSBarry Smith Level: beginner 281120f4b53cSBarry Smith 281201729b5cSPatrick Sanan Notes: 2813bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2814bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2815bb7acecfSBarry Smith 2816bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 281701729b5cSPatrick Sanan 28181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 281960225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2820bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 282101729b5cSPatrick Sanan @*/ 2822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2823d71ae5a4SJacob Faibussowitsch { 282401729b5cSPatrick Sanan PetscFunctionBegin; 28259566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 28269566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 28273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282801729b5cSPatrick Sanan } 282901729b5cSPatrick Sanan 283001729b5cSPatrick Sanan /*@ 283147c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 283247c6ae99SBarry Smith 283320f4b53cSBarry Smith Neighbor-wise Collective 283447c6ae99SBarry Smith 283547c6ae99SBarry Smith Input Parameters: 2836bb7acecfSBarry Smith + dm - the `DM` object 283747c6ae99SBarry Smith . g - the global vector 2838bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 283947c6ae99SBarry Smith - l - the local vector 284047c6ae99SBarry Smith 284101729b5cSPatrick Sanan Level: intermediate 284247c6ae99SBarry Smith 2843bb7acecfSBarry Smith Notes: 2844bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2845bb7acecfSBarry Smith 2846bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2847bb7acecfSBarry Smith 2848bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2849bb7acecfSBarry Smith 2850bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2851bb7acecfSBarry Smith 285260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 285347c6ae99SBarry Smith @*/ 2854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2855d71ae5a4SJacob Faibussowitsch { 28567128ae9fSMatthew G Knepley PetscSF sf; 2857baf369e7SPeter Brune DMGlobalToLocalHookLink link; 285847c6ae99SBarry Smith 285947c6ae99SBarry Smith PetscFunctionBegin; 2860171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2861baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28621baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2863baf369e7SPeter Brune } 28649566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28657128ae9fSMatthew G Knepley if (sf) { 2866ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2867ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2868d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28697128ae9fSMatthew G Knepley 28707a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28729566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28767128ae9fSMatthew G Knepley } else { 2877fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28787128ae9fSMatthew G Knepley } 28793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 288047c6ae99SBarry Smith } 288147c6ae99SBarry Smith 288247c6ae99SBarry Smith /*@ 288347c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 288447c6ae99SBarry Smith 288520f4b53cSBarry Smith Neighbor-wise Collective 288647c6ae99SBarry Smith 288747c6ae99SBarry Smith Input Parameters: 2888bb7acecfSBarry Smith + dm - the `DM` object 288947c6ae99SBarry Smith . g - the global vector 2890bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 289147c6ae99SBarry Smith - l - the local vector 289247c6ae99SBarry Smith 289301729b5cSPatrick Sanan Level: intermediate 289447c6ae99SBarry Smith 2895bb7acecfSBarry Smith Note: 2896bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2897bb7acecfSBarry Smith 289860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 289947c6ae99SBarry Smith @*/ 2900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2901d71ae5a4SJacob Faibussowitsch { 29027128ae9fSMatthew G Knepley PetscSF sf; 2903ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2904ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2905ca3d3a14SMatthew G. Knepley PetscBool transform; 2906baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2907d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 290847c6ae99SBarry Smith 290947c6ae99SBarry Smith PetscFunctionBegin; 2910171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29119566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 29129566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 29137128ae9fSMatthew G Knepley if (sf) { 29147a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 29157128ae9fSMatthew G Knepley 29169566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 29179566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 29189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 29199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 29209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 29219566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 29227128ae9fSMatthew G Knepley } else { 2923fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 29247128ae9fSMatthew G Knepley } 29259566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2926baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 29279566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2928baf369e7SPeter Brune } 29293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 293047c6ae99SBarry Smith } 293147c6ae99SBarry Smith 2932d4d07f1eSToby Isaac /*@C 2933d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2934d4d07f1eSToby Isaac 293520f4b53cSBarry Smith Logically Collective 2936d4d07f1eSToby Isaac 29374165533cSJose E. Roman Input Parameters: 2938bb7acecfSBarry Smith + dm - the `DM` 2939bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2940bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 294120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2942d4d07f1eSToby Isaac 294320f4b53cSBarry Smith Calling sequence of `beginhook`: 2944a4e35b19SJacob Faibussowitsch + global - global `DM` 2945d4d07f1eSToby Isaac . l - local vector 2946d4d07f1eSToby Isaac . mode - mode 2947d4d07f1eSToby Isaac . g - global vector 2948d4d07f1eSToby Isaac - ctx - optional user-defined function context 2949d4d07f1eSToby Isaac 295020f4b53cSBarry Smith Calling sequence of `endhook`: 2951bb7acecfSBarry Smith + global - global `DM` 2952d4d07f1eSToby Isaac . l - local vector 2953d4d07f1eSToby Isaac . mode - mode 2954d4d07f1eSToby Isaac . g - global vector 2955d4d07f1eSToby Isaac - ctx - optional user-defined function context 2956d4d07f1eSToby Isaac 2957d4d07f1eSToby Isaac Level: advanced 2958d4d07f1eSToby Isaac 29591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2960d4d07f1eSToby Isaac @*/ 2961a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2962d71ae5a4SJacob Faibussowitsch { 2963d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2964d4d07f1eSToby Isaac 2965d4d07f1eSToby Isaac PetscFunctionBegin; 2966d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2967d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29689566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2969d4d07f1eSToby Isaac link->beginhook = beginhook; 2970d4d07f1eSToby Isaac link->endhook = endhook; 2971d4d07f1eSToby Isaac link->ctx = ctx; 2972d4d07f1eSToby Isaac link->next = NULL; 2973d4d07f1eSToby Isaac *p = link; 29743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2975d4d07f1eSToby Isaac } 2976d4d07f1eSToby Isaac 2977d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2978d71ae5a4SJacob Faibussowitsch { 29794c274da1SToby Isaac PetscFunctionBegin; 2980a4e35b19SJacob Faibussowitsch (void)g; 2981a4e35b19SJacob Faibussowitsch (void)ctx; 29824c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29832b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29842b6b7d09SToby Isaac Mat cMat; 29852b6b7d09SToby Isaac Vec cVec; 29865db9a05bSToby Isaac PetscInt nRows; 29872b6b7d09SToby Isaac PetscSection section, cSec; 29882b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29892b6b7d09SToby Isaac 29902b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29912b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29925db9a05bSToby Isaac 29939566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29943ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29969566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29984c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 30004c274da1SToby Isaac if (dof) { 30014c274da1SToby Isaac PetscInt d; 30024c274da1SToby Isaac PetscScalar *vals; 30039566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 30049566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 30054c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 30064c274da1SToby Isaac * we just extracted */ 3007ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 30084c274da1SToby Isaac } 30094c274da1SToby Isaac } 30109566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 30119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 30124c274da1SToby Isaac } 30133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30144c274da1SToby Isaac } 301501729b5cSPatrick Sanan /*@ 301601729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 301701729b5cSPatrick Sanan 301820f4b53cSBarry Smith Neighbor-wise Collective 301901729b5cSPatrick Sanan 302001729b5cSPatrick Sanan Input Parameters: 3021bb7acecfSBarry Smith + dm - the `DM` object 302201729b5cSPatrick Sanan . l - the local vector 3023bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 302401729b5cSPatrick Sanan - g - the global vector 302501729b5cSPatrick Sanan 302620f4b53cSBarry Smith Level: beginner 302720f4b53cSBarry Smith 302801729b5cSPatrick Sanan Notes: 302901729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 3030bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 303101729b5cSPatrick Sanan 3032bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3033bb7acecfSBarry Smith 3034bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 3035bb7acecfSBarry Smith 3036bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 303701729b5cSPatrick Sanan 30381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 303901729b5cSPatrick Sanan @*/ 3040d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3041d71ae5a4SJacob Faibussowitsch { 304201729b5cSPatrick Sanan PetscFunctionBegin; 30439566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30449566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304601729b5cSPatrick Sanan } 30474c274da1SToby Isaac 304847c6ae99SBarry Smith /*@ 304901729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30509a42bb27SBarry Smith 305120f4b53cSBarry Smith Neighbor-wise Collective 30529a42bb27SBarry Smith 30539a42bb27SBarry Smith Input Parameters: 3054bb7acecfSBarry Smith + dm - the `DM` object 3055f6813fd5SJed Brown . l - the local vector 3056aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30571eb28f2eSBarry Smith - g - the global vector 30589a42bb27SBarry Smith 305920f4b53cSBarry Smith Level: intermediate 306020f4b53cSBarry Smith 306195452b02SPatrick Sanan Notes: 3062bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3063bb7acecfSBarry Smith 3064bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3065bb7acecfSBarry Smith 3066bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3067bb7acecfSBarry Smith 3068bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3069bb7acecfSBarry Smith 3070bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30719a42bb27SBarry Smith 30721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30739a42bb27SBarry Smith @*/ 3074d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3075d71ae5a4SJacob Faibussowitsch { 30767128ae9fSMatthew G Knepley PetscSF sf; 307784330215SMatthew G. Knepley PetscSection s, gs; 3078d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3079ca3d3a14SMatthew G. Knepley Vec tmpl; 3080ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3081ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3082fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3083d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30849a42bb27SBarry Smith 30859a42bb27SBarry Smith PetscFunctionBegin; 3086171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3087d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30881baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3089d4d07f1eSToby Isaac } 30909566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30919566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30929566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30937128ae9fSMatthew G Knepley switch (mode) { 30947128ae9fSMatthew G Knepley case INSERT_VALUES: 30957128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3096d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3097d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3098d71ae5a4SJacob Faibussowitsch break; 30997128ae9fSMatthew G Knepley case ADD_VALUES: 31007128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3101d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3102d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3103d71ae5a4SJacob Faibussowitsch break; 3104d71ae5a4SJacob Faibussowitsch default: 3105d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31067128ae9fSMatthew G Knepley } 3107ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 31089566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3109ca3d3a14SMatthew G. Knepley if (transform) { 31109566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31119566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 31129566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 31139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3114fa88e482SJed Brown } else if (isInsert) { 31159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3116fa88e482SJed Brown } else { 31179566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3118fa88e482SJed Brown l_inplace = PETSC_TRUE; 3119ca3d3a14SMatthew G. Knepley } 3120fa88e482SJed Brown if (s && isInsert) { 31219566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3122fa88e482SJed Brown } else { 31239566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3124fa88e482SJed Brown g_inplace = PETSC_TRUE; 3125fa88e482SJed Brown } 3126ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 31279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 312884330215SMatthew G. Knepley } else if (s && isInsert) { 312984330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 313084330215SMatthew G. Knepley 31319566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 31329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 31339566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 313484330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3135b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 313684330215SMatthew G. Knepley 31379566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3143b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 314403442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31457a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3146b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3147b3b16f48SMatthew G. Knepley if (!gcdof) { 314884330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3149b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3150b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 315184330215SMatthew G. Knepley const PetscInt *cdofs; 315284330215SMatthew G. Knepley PetscInt cind = 0; 315384330215SMatthew G. Knepley 31549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3155b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31569371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31579371c9d4SSatish Balay ++cind; 31589371c9d4SSatish Balay continue; 31599371c9d4SSatish Balay } 3160b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 316184330215SMatthew G. Knepley } 31627a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 316384330215SMatthew G. Knepley } 3164ca3d3a14SMatthew G. Knepley } 3165fa88e482SJed Brown if (g_inplace) { 31669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3167fa88e482SJed Brown } else { 31689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3169fa88e482SJed Brown } 3170ca3d3a14SMatthew G. Knepley if (transform) { 31719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31729566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3173fa88e482SJed Brown } else if (l_inplace) { 31749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3175ca3d3a14SMatthew G. Knepley } else { 31769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3177ca3d3a14SMatthew G. Knepley } 31787128ae9fSMatthew G Knepley } else { 3179fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31807128ae9fSMatthew G Knepley } 31813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31829a42bb27SBarry Smith } 31839a42bb27SBarry Smith 31849a42bb27SBarry Smith /*@ 31859a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 318647c6ae99SBarry Smith 318720f4b53cSBarry Smith Neighbor-wise Collective 318847c6ae99SBarry Smith 318947c6ae99SBarry Smith Input Parameters: 3190bb7acecfSBarry Smith + dm - the `DM` object 3191f6813fd5SJed Brown . l - the local vector 3192bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3193f6813fd5SJed Brown - g - the global vector 319447c6ae99SBarry Smith 319501729b5cSPatrick Sanan Level: intermediate 319647c6ae99SBarry Smith 3197bb7acecfSBarry Smith Note: 3198bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3199bb7acecfSBarry Smith 320060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 320147c6ae99SBarry Smith @*/ 3202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3203d71ae5a4SJacob Faibussowitsch { 32047128ae9fSMatthew G Knepley PetscSF sf; 320584330215SMatthew G. Knepley PetscSection s; 3206d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3207ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 320847c6ae99SBarry Smith 320947c6ae99SBarry Smith PetscFunctionBegin; 3210171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32119566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 32129566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 32137128ae9fSMatthew G Knepley switch (mode) { 32147128ae9fSMatthew G Knepley case INSERT_VALUES: 3215d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3216d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3217d71ae5a4SJacob Faibussowitsch break; 32187128ae9fSMatthew G Knepley case ADD_VALUES: 3219d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3220d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3221d71ae5a4SJacob Faibussowitsch break; 3222d71ae5a4SJacob Faibussowitsch default: 3223d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 32247128ae9fSMatthew G Knepley } 322584330215SMatthew G. Knepley if (sf && !isInsert) { 3226ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3227ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3228ca3d3a14SMatthew G. Knepley Vec tmpl; 322984330215SMatthew G. Knepley 32309566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3231ca3d3a14SMatthew G. Knepley if (transform) { 32329566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 32339566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3234ca3d3a14SMatthew G. Knepley } else { 32359566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3236ca3d3a14SMatthew G. Knepley } 32379566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32389566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3239ca3d3a14SMatthew G. Knepley if (transform) { 32409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32419566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3242ca3d3a14SMatthew G. Knepley } else { 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3244ca3d3a14SMatthew G. Knepley } 32459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 324684330215SMatthew G. Knepley } else if (s && isInsert) { 32477128ae9fSMatthew G Knepley } else { 3248fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32497128ae9fSMatthew G Knepley } 3250d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32519566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3252d4d07f1eSToby Isaac } 32533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 325447c6ae99SBarry Smith } 325547c6ae99SBarry Smith 3256f089877aSRichard Tran Mills /*@ 3257a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3258a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3259a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3260f089877aSRichard Tran Mills 326120f4b53cSBarry Smith Neighbor-wise Collective 3262f089877aSRichard Tran Mills 3263f089877aSRichard Tran Mills Input Parameters: 3264bb7acecfSBarry Smith + dm - the `DM` object 3265bc0a1609SRichard Tran Mills . g - the original local vector 3266bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3267f089877aSRichard Tran Mills 3268bc0a1609SRichard Tran Mills Output Parameter: 3269bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3270f089877aSRichard Tran Mills 3271f089877aSRichard Tran Mills Level: intermediate 3272f089877aSRichard Tran Mills 327373ff1848SBarry Smith Note: 3274a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3275a4e35b19SJacob Faibussowitsch 327660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3277f089877aSRichard Tran Mills @*/ 3278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3279d71ae5a4SJacob Faibussowitsch { 3280f089877aSRichard Tran Mills PetscFunctionBegin; 3281f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32829f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32839f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32849f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3286f089877aSRichard Tran Mills } 3287f089877aSRichard Tran Mills 3288f089877aSRichard Tran Mills /*@ 3289bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3290bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3291f089877aSRichard Tran Mills 329220f4b53cSBarry Smith Neighbor-wise Collective 3293f089877aSRichard Tran Mills 3294f089877aSRichard Tran Mills Input Parameters: 329560225df5SJacob Faibussowitsch + dm - the `DM` object 3296bc0a1609SRichard Tran Mills . g - the original local vector 3297bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3298f089877aSRichard Tran Mills 3299bc0a1609SRichard Tran Mills Output Parameter: 3300bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3301f089877aSRichard Tran Mills 3302f089877aSRichard Tran Mills Level: intermediate 3303f089877aSRichard Tran Mills 330460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3305f089877aSRichard Tran Mills @*/ 3306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3307d71ae5a4SJacob Faibussowitsch { 3308f089877aSRichard Tran Mills PetscFunctionBegin; 3309f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33109f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 33119f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 33129f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 33133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3314f089877aSRichard Tran Mills } 3315f089877aSRichard Tran Mills 331647c6ae99SBarry Smith /*@ 3317bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 331847c6ae99SBarry Smith 331920f4b53cSBarry Smith Collective 332047c6ae99SBarry Smith 3321d8d19677SJose E. Roman Input Parameters: 3322bb7acecfSBarry Smith + dm - the `DM` object 332320f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 332447c6ae99SBarry Smith 332547c6ae99SBarry Smith Output Parameter: 3326bb7acecfSBarry Smith . dmc - the coarsened `DM` 332747c6ae99SBarry Smith 332847c6ae99SBarry Smith Level: developer 332947c6ae99SBarry Smith 333073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 333173ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 333247c6ae99SBarry Smith @*/ 3333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3334d71ae5a4SJacob Faibussowitsch { 3335b17ce1afSJed Brown DMCoarsenHookLink link; 333647c6ae99SBarry Smith 333747c6ae99SBarry Smith PetscFunctionBegin; 3338171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3340dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3341b9d85ea2SLisandro Dalcin if (*dmc) { 3342a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33439566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 334443842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33459566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3346644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33470598a293SJed Brown (*dmc)->levelup = dm->levelup; 3348656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33499566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3350b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33519566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3352b17ce1afSJed Brown } 3353b9d85ea2SLisandro Dalcin } 33549566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33557a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3357b17ce1afSJed Brown } 3358b17ce1afSJed Brown 3359bb9467b5SJed Brown /*@C 3360b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3361b17ce1afSJed Brown 336220f4b53cSBarry Smith Logically Collective; No Fortran Support 3363b17ce1afSJed Brown 33644165533cSJose E. Roman Input Parameters: 3365bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3366b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3367bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 336820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3369b17ce1afSJed Brown 337020f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3371bb7acecfSBarry Smith + fine - fine level `DM` 3372bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3373b17ce1afSJed Brown - ctx - optional user-defined function context 3374b17ce1afSJed Brown 337520f4b53cSBarry Smith Calling sequence of `restricthook`: 3376bb7acecfSBarry Smith + fine - fine level `DM` 3377bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3378c833c3b5SJed Brown . rscale - scaling vector for restriction 3379c833c3b5SJed Brown . inject - matrix restricting by injection 3380b17ce1afSJed Brown . coarse - coarse level DM to update 3381b17ce1afSJed Brown - ctx - optional user-defined function context 3382b17ce1afSJed Brown 3383b17ce1afSJed Brown Level: advanced 3384b17ce1afSJed Brown 3385b17ce1afSJed Brown Notes: 3386bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3387b17ce1afSJed Brown 3388b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3389b17ce1afSJed Brown 3390b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3391bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3392b17ce1afSJed Brown 3393bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3394bb7acecfSBarry Smith 33951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3396b17ce1afSJed Brown @*/ 3397a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3398d71ae5a4SJacob Faibussowitsch { 3399b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3400b17ce1afSJed Brown 3401b17ce1afSJed Brown PetscFunctionBegin; 3402b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 34031e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34043ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 34051e3d8eccSJed Brown } 34069566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3407b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3408b17ce1afSJed Brown link->restricthook = restricthook; 3409b17ce1afSJed Brown link->ctx = ctx; 34100298fd71SBarry Smith link->next = NULL; 3411b17ce1afSJed Brown *p = link; 34123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3413b17ce1afSJed Brown } 3414b17ce1afSJed Brown 3415dc822a44SJed Brown /*@C 3416bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3417dc822a44SJed Brown 341820f4b53cSBarry Smith Logically Collective; No Fortran Support 3419dc822a44SJed Brown 34204165533cSJose E. Roman Input Parameters: 3421bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3422dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3423bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 342420f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3425dc822a44SJed Brown 3426dc822a44SJed Brown Level: advanced 3427dc822a44SJed Brown 342873ff1848SBarry Smith Notes: 342973ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 343073ff1848SBarry Smith 343173ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3432dc822a44SJed Brown 34331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3434dc822a44SJed Brown @*/ 3435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3436d71ae5a4SJacob Faibussowitsch { 3437dc822a44SJed Brown DMCoarsenHookLink link, *p; 3438dc822a44SJed Brown 3439dc822a44SJed Brown PetscFunctionBegin; 3440dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3441dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3442dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3443dc822a44SJed Brown link = *p; 3444dc822a44SJed Brown *p = link->next; 34459566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3446dc822a44SJed Brown break; 3447dc822a44SJed Brown } 3448dc822a44SJed Brown } 34493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450dc822a44SJed Brown } 3451dc822a44SJed Brown 3452b17ce1afSJed Brown /*@ 3453bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3454b17ce1afSJed Brown 3455b17ce1afSJed Brown Collective if any hooks are 3456b17ce1afSJed Brown 34574165533cSJose E. Roman Input Parameters: 3458bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3459bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3460e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3461bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 346220f4b53cSBarry Smith - coarse - coarser `DM` to update 3463b17ce1afSJed Brown 3464b17ce1afSJed Brown Level: developer 3465b17ce1afSJed Brown 346673ff1848SBarry Smith Developer Note: 3467bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3468bb7acecfSBarry Smith 34691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3470b17ce1afSJed Brown @*/ 3471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3472d71ae5a4SJacob Faibussowitsch { 3473b17ce1afSJed Brown DMCoarsenHookLink link; 3474b17ce1afSJed Brown 3475b17ce1afSJed Brown PetscFunctionBegin; 3476b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34771baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3478b17ce1afSJed Brown } 34793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 348047c6ae99SBarry Smith } 348147c6ae99SBarry Smith 3482bb9467b5SJed Brown /*@C 348373ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34845dbd56e3SPeter Brune 348520f4b53cSBarry Smith Logically Collective; No Fortran Support 34865dbd56e3SPeter Brune 34874165533cSJose E. Roman Input Parameters: 3488bb7acecfSBarry Smith + global - global `DM` 3489bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34905dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 349120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34925dbd56e3SPeter Brune 349320f4b53cSBarry Smith Calling sequence of `ddhook`: 3494bb7acecfSBarry Smith + global - global `DM` 349573ff1848SBarry Smith . block - subdomain `DM` 3496ec4806b8SPeter Brune - ctx - optional user-defined function context 3497ec4806b8SPeter Brune 349820f4b53cSBarry Smith Calling sequence of `restricthook`: 3499bb7acecfSBarry Smith + global - global `DM` 350073ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 350173ff1848SBarry Smith . in - scatter to sub vector values only owned locally 350273ff1848SBarry Smith . block - subdomain `DM` 35035dbd56e3SPeter Brune - ctx - optional user-defined function context 35045dbd56e3SPeter Brune 35055dbd56e3SPeter Brune Level: advanced 35065dbd56e3SPeter Brune 35075dbd56e3SPeter Brune Notes: 350873ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 35095dbd56e3SPeter Brune 35105dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 35115dbd56e3SPeter Brune 35125dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3513bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 35145dbd56e3SPeter Brune 351573ff1848SBarry Smith Developer Note: 351673ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 351773ff1848SBarry Smith 351873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 35195dbd56e3SPeter Brune @*/ 3520a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3521d71ae5a4SJacob Faibussowitsch { 3522be081cd6SPeter Brune DMSubDomainHookLink link, *p; 35235dbd56e3SPeter Brune 35245dbd56e3SPeter Brune PetscFunctionBegin; 35255dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3526b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 35273ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3528b3a6b972SJed Brown } 35299566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 35305dbd56e3SPeter Brune link->restricthook = restricthook; 3531be081cd6SPeter Brune link->ddhook = ddhook; 35325dbd56e3SPeter Brune link->ctx = ctx; 35330298fd71SBarry Smith link->next = NULL; 35345dbd56e3SPeter Brune *p = link; 35353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35365dbd56e3SPeter Brune } 35375dbd56e3SPeter Brune 3538b3a6b972SJed Brown /*@C 353973ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3540b3a6b972SJed Brown 354120f4b53cSBarry Smith Logically Collective; No Fortran Support 3542b3a6b972SJed Brown 35434165533cSJose E. Roman Input Parameters: 3544bb7acecfSBarry Smith + global - global `DM` 3545bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3546b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 354720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3548b3a6b972SJed Brown 3549b3a6b972SJed Brown Level: advanced 3550b3a6b972SJed Brown 355173ff1848SBarry Smith Note: 355273ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 355373ff1848SBarry Smith 355473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 355573ff1848SBarry Smith `DMCreateDomainDecomposition()` 3556b3a6b972SJed Brown @*/ 3557d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3558d71ae5a4SJacob Faibussowitsch { 3559b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3560b3a6b972SJed Brown 3561b3a6b972SJed Brown PetscFunctionBegin; 3562b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3563b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3564b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3565b3a6b972SJed Brown link = *p; 3566b3a6b972SJed Brown *p = link->next; 35679566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3568b3a6b972SJed Brown break; 3569b3a6b972SJed Brown } 3570b3a6b972SJed Brown } 35713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3572b3a6b972SJed Brown } 3573b3a6b972SJed Brown 35745dbd56e3SPeter Brune /*@ 357573ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35765dbd56e3SPeter Brune 35775dbd56e3SPeter Brune Collective if any hooks are 35785dbd56e3SPeter Brune 35794165533cSJose E. Roman Input Parameters: 3580a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3581a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3582a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3583a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35845dbd56e3SPeter Brune 35855dbd56e3SPeter Brune Level: developer 35865dbd56e3SPeter Brune 358773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35885dbd56e3SPeter Brune @*/ 3589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3590d71ae5a4SJacob Faibussowitsch { 3591be081cd6SPeter Brune DMSubDomainHookLink link; 35925dbd56e3SPeter Brune 35935dbd56e3SPeter Brune PetscFunctionBegin; 3594be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35951baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35965dbd56e3SPeter Brune } 35973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35985dbd56e3SPeter Brune } 35995dbd56e3SPeter Brune 36005fe1f584SPeter Brune /*@ 3601bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 36025fe1f584SPeter Brune 36035fe1f584SPeter Brune Not Collective 36045fe1f584SPeter Brune 36055fe1f584SPeter Brune Input Parameter: 3606bb7acecfSBarry Smith . dm - the `DM` object 36075fe1f584SPeter Brune 36085fe1f584SPeter Brune Output Parameter: 36096a7d9d85SPeter Brune . level - number of coarsenings 36105fe1f584SPeter Brune 36115fe1f584SPeter Brune Level: developer 36125fe1f584SPeter Brune 36131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36145fe1f584SPeter Brune @*/ 3615d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3616d71ae5a4SJacob Faibussowitsch { 36175fe1f584SPeter Brune PetscFunctionBegin; 36185fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36194f572ea9SToby Isaac PetscAssertPointer(level, 2); 36205fe1f584SPeter Brune *level = dm->leveldown; 36213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36225fe1f584SPeter Brune } 36235fe1f584SPeter Brune 36249a64c4a8SMatthew G. Knepley /*@ 3625bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 36269a64c4a8SMatthew G. Knepley 362720f4b53cSBarry Smith Collective 36289a64c4a8SMatthew G. Knepley 36299a64c4a8SMatthew G. Knepley Input Parameters: 3630bb7acecfSBarry Smith + dm - the `DM` object 36319a64c4a8SMatthew G. Knepley - level - number of coarsenings 36329a64c4a8SMatthew G. Knepley 36339a64c4a8SMatthew G. Knepley Level: developer 36349a64c4a8SMatthew G. Knepley 3635bb7acecfSBarry Smith Note: 3636bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3637bb7acecfSBarry Smith 363842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36399a64c4a8SMatthew G. Knepley @*/ 3640d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3641d71ae5a4SJacob Faibussowitsch { 36429a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36439a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36449a64c4a8SMatthew G. Knepley dm->leveldown = level; 36453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36469a64c4a8SMatthew G. Knepley } 36479a64c4a8SMatthew G. Knepley 3648cc4c1da9SBarry Smith /*@ 3649bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 365047c6ae99SBarry Smith 365120f4b53cSBarry Smith Collective 365247c6ae99SBarry Smith 3653d8d19677SJose E. Roman Input Parameters: 3654bb7acecfSBarry Smith + dm - the `DM` object 365547c6ae99SBarry Smith - nlevels - the number of levels of refinement 365647c6ae99SBarry Smith 365747c6ae99SBarry Smith Output Parameter: 3658bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 365947c6ae99SBarry Smith 366047c6ae99SBarry Smith Level: developer 366147c6ae99SBarry Smith 36621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 366347c6ae99SBarry Smith @*/ 3664d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3665d71ae5a4SJacob Faibussowitsch { 366647c6ae99SBarry Smith PetscFunctionBegin; 3667171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36687a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36693ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36704f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3671213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 367247c6ae99SBarry Smith PetscInt i; 367347c6ae99SBarry Smith 36749566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 367548a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3676213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 367847c6ae99SBarry Smith } 367947c6ae99SBarry Smith 3680cc4c1da9SBarry Smith /*@ 3681bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 368247c6ae99SBarry Smith 368320f4b53cSBarry Smith Collective 368447c6ae99SBarry Smith 3685d8d19677SJose E. Roman Input Parameters: 3686bb7acecfSBarry Smith + dm - the `DM` object 368747c6ae99SBarry Smith - nlevels - the number of levels of coarsening 368847c6ae99SBarry Smith 368947c6ae99SBarry Smith Output Parameter: 3690bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 369147c6ae99SBarry Smith 369247c6ae99SBarry Smith Level: developer 369347c6ae99SBarry Smith 36941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 369547c6ae99SBarry Smith @*/ 3696d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3697d71ae5a4SJacob Faibussowitsch { 369847c6ae99SBarry Smith PetscFunctionBegin; 3699171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37007a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 37013ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 37024f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3703213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 370447c6ae99SBarry Smith PetscInt i; 370547c6ae99SBarry Smith 37069566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 370748a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3708213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 37093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 371047c6ae99SBarry Smith } 371147c6ae99SBarry Smith 37121a266240SBarry Smith /*@C 3713bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 37141a266240SBarry Smith 3715bb7acecfSBarry Smith Logically Collective if the function is collective 37161a266240SBarry Smith 37171a266240SBarry Smith Input Parameters: 3718bb7acecfSBarry Smith + dm - the `DM` object 371949abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence 37201a266240SBarry Smith 37211a266240SBarry Smith Level: intermediate 37221a266240SBarry Smith 372349abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, 372449abdd8aSBarry Smith `DMGetApplicationContext()`, `PetscCtxDestroyFn` 3725f07f9ceaSJed Brown @*/ 372649abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy) 3727d71ae5a4SJacob Faibussowitsch { 37281a266240SBarry Smith PetscFunctionBegin; 3729171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37301a266240SBarry Smith dm->ctxdestroy = destroy; 37313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 37321a266240SBarry Smith } 37331a266240SBarry Smith 3734b07ff414SBarry Smith /*@ 3735bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 373647c6ae99SBarry Smith 373747c6ae99SBarry Smith Not Collective 373847c6ae99SBarry Smith 373947c6ae99SBarry Smith Input Parameters: 3740bb7acecfSBarry Smith + dm - the `DM` object 374147c6ae99SBarry Smith - ctx - the user context 374247c6ae99SBarry Smith 374347c6ae99SBarry Smith Level: intermediate 374447c6ae99SBarry Smith 3745ce78bad3SBarry Smith Note: 374635cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3747e33b3f0fSStefano Zampini In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable 3748e33b3f0fSStefano Zampini to store objects that represent discretized quantities inside the context. 3749bb7acecfSBarry Smith 3750ce78bad3SBarry Smith Fortran Note: 3751ce78bad3SBarry Smith This only works when `ctx` is a Fortran derived type (it cannot be a `PetscObject`), we recommend writing a Fortran interface definition for this 3752ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is passed in as the `ctx` argument. See `DMGetApplicationContext()` for 3753ce78bad3SBarry Smith an example. 3754ce78bad3SBarry Smith 375560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 375647c6ae99SBarry Smith @*/ 3757d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3758d71ae5a4SJacob Faibussowitsch { 375947c6ae99SBarry Smith PetscFunctionBegin; 3760171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 376147c6ae99SBarry Smith dm->ctx = ctx; 37623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376347c6ae99SBarry Smith } 376447c6ae99SBarry Smith 376547c6ae99SBarry Smith /*@ 3766ce78bad3SBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object provided with `DMSetApplicationContext()` 376747c6ae99SBarry Smith 376847c6ae99SBarry Smith Not Collective 376947c6ae99SBarry Smith 377047c6ae99SBarry Smith Input Parameter: 3771bb7acecfSBarry Smith . dm - the `DM` object 377247c6ae99SBarry Smith 377347c6ae99SBarry Smith Output Parameter: 3774ce78bad3SBarry Smith . ctx - a pointer to the user context 377547c6ae99SBarry Smith 377647c6ae99SBarry Smith Level: intermediate 377747c6ae99SBarry Smith 3778bb7acecfSBarry Smith Note: 377935cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3780bb7acecfSBarry Smith 3781ce78bad3SBarry Smith Fortran Notes: 3782ce78bad3SBarry Smith This only works when the context is a Fortran derived type (it cannot be a `PetscObject`) and you **must** write a Fortran interface definition for this 3783ce78bad3SBarry Smith function that tells the Fortran compiler the derived data type that is returned as the `ctx` argument. For example, 3784ce78bad3SBarry Smith .vb 3785ce78bad3SBarry Smith Interface DMGetApplicationContext 3786ce78bad3SBarry Smith Subroutine DMGetApplicationContext(dm,ctx,ierr) 3787ce78bad3SBarry Smith #include <petsc/finclude/petscdm.h> 3788ce78bad3SBarry Smith use petscdm 3789ce78bad3SBarry Smith DM dm 3790ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3791ce78bad3SBarry Smith PetscErrorCode ierr 3792ce78bad3SBarry Smith End Subroutine 3793ce78bad3SBarry Smith End Interface DMGetApplicationContext 3794ce78bad3SBarry Smith .ve 3795ce78bad3SBarry Smith 3796bfe80ac4SPierre Jolivet The prototype for `ctx` must be 3797ce78bad3SBarry Smith .vb 3798ce78bad3SBarry Smith type(tUsertype), pointer :: ctx 3799ce78bad3SBarry Smith .ve 3800ce78bad3SBarry Smith 380142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 380247c6ae99SBarry Smith @*/ 3803ce78bad3SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm, PeCtx ctx) 3804d71ae5a4SJacob Faibussowitsch { 380547c6ae99SBarry Smith PetscFunctionBegin; 3806171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38071b2093e4SBarry Smith *(void **)ctx = dm->ctx; 38083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 380947c6ae99SBarry Smith } 381047c6ae99SBarry Smith 381108da532bSDmitry Karpeev /*@C 3812bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 381308da532bSDmitry Karpeev 381420f4b53cSBarry Smith Logically Collective 381508da532bSDmitry Karpeev 3816d8d19677SJose E. Roman Input Parameters: 381708da532bSDmitry Karpeev + dm - the DM object 3818ce78bad3SBarry Smith - f - the function that computes variable bounds used by `SNESVI` (use `NULL` to cancel a previous function that was set) 381908da532bSDmitry Karpeev 382008da532bSDmitry Karpeev Level: intermediate 382108da532bSDmitry Karpeev 3822ce78bad3SBarry Smith Developer Note: 3823ce78bad3SBarry Smith Should be called `DMSetComputeVIBounds()` or something similar 3824ce78bad3SBarry Smith 38251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3826db781477SPatrick Sanan `DMSetJacobian()` 382708da532bSDmitry Karpeev @*/ 3828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3829d71ae5a4SJacob Faibussowitsch { 383008da532bSDmitry Karpeev PetscFunctionBegin; 38315a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 383208da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 38333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 383408da532bSDmitry Karpeev } 383508da532bSDmitry Karpeev 383608da532bSDmitry Karpeev /*@ 3837bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 383808da532bSDmitry Karpeev 383908da532bSDmitry Karpeev Not Collective 384008da532bSDmitry Karpeev 384108da532bSDmitry Karpeev Input Parameter: 3842bb7acecfSBarry Smith . dm - the `DM` object to destroy 384308da532bSDmitry Karpeev 384408da532bSDmitry Karpeev Output Parameter: 3845bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 384608da532bSDmitry Karpeev 384708da532bSDmitry Karpeev Level: developer 384808da532bSDmitry Karpeev 38491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 385008da532bSDmitry Karpeev @*/ 3851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3852d71ae5a4SJacob Faibussowitsch { 385308da532bSDmitry Karpeev PetscFunctionBegin; 38545a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38554f572ea9SToby Isaac PetscAssertPointer(flg, 2); 385608da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 38573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 385808da532bSDmitry Karpeev } 385908da532bSDmitry Karpeev 3860cc4c1da9SBarry Smith /*@ 3861bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 386208da532bSDmitry Karpeev 386320f4b53cSBarry Smith Logically Collective 386408da532bSDmitry Karpeev 3865f899ff85SJose E. Roman Input Parameter: 3866bb7acecfSBarry Smith . dm - the `DM` object 386708da532bSDmitry Karpeev 386860225df5SJacob Faibussowitsch Output Parameters: 386908da532bSDmitry Karpeev + xl - lower bound 387008da532bSDmitry Karpeev - xu - upper bound 387108da532bSDmitry Karpeev 3872907376e6SBarry Smith Level: advanced 3873907376e6SBarry Smith 387420f4b53cSBarry Smith Note: 387595452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 387608da532bSDmitry Karpeev 38771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 387808da532bSDmitry Karpeev @*/ 3879d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3880d71ae5a4SJacob Faibussowitsch { 388108da532bSDmitry Karpeev PetscFunctionBegin; 38825a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 388308da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38845a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3885dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388708da532bSDmitry Karpeev } 388808da532bSDmitry Karpeev 3889b0ae01b7SPeter Brune /*@ 3890bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3891b0ae01b7SPeter Brune 3892b0ae01b7SPeter Brune Not Collective 3893b0ae01b7SPeter Brune 3894b0ae01b7SPeter Brune Input Parameter: 3895b0ae01b7SPeter Brune . dm - the DM object 3896b0ae01b7SPeter Brune 3897b0ae01b7SPeter Brune Output Parameter: 3898bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3899b0ae01b7SPeter Brune 3900b0ae01b7SPeter Brune Level: developer 3901b0ae01b7SPeter Brune 39021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3903b0ae01b7SPeter Brune @*/ 3904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3905d71ae5a4SJacob Faibussowitsch { 3906b0ae01b7SPeter Brune PetscFunctionBegin; 39075a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39084f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3909b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 39103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3911b0ae01b7SPeter Brune } 3912b0ae01b7SPeter Brune 39133ad4599aSBarry Smith /*@ 3914bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 39153ad4599aSBarry Smith 39163ad4599aSBarry Smith Not Collective 39173ad4599aSBarry Smith 39183ad4599aSBarry Smith Input Parameter: 3919bb7acecfSBarry Smith . dm - the `DM` object 39203ad4599aSBarry Smith 39213ad4599aSBarry Smith Output Parameter: 3922bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 39233ad4599aSBarry Smith 39243ad4599aSBarry Smith Level: developer 39253ad4599aSBarry Smith 39261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 39273ad4599aSBarry Smith @*/ 3928d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3929d71ae5a4SJacob Faibussowitsch { 39303ad4599aSBarry Smith PetscFunctionBegin; 39315a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39324f572ea9SToby Isaac PetscAssertPointer(flg, 2); 39333ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 39343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39353ad4599aSBarry Smith } 39363ad4599aSBarry Smith 3937a7058e45SLawrence Mitchell /*@ 3938bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3939a7058e45SLawrence Mitchell 3940a7058e45SLawrence Mitchell Not Collective 3941a7058e45SLawrence Mitchell 3942a7058e45SLawrence Mitchell Input Parameter: 3943bb7acecfSBarry Smith . dm - the `DM` object 3944a7058e45SLawrence Mitchell 3945a7058e45SLawrence Mitchell Output Parameter: 3946bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3947a7058e45SLawrence Mitchell 3948a7058e45SLawrence Mitchell Level: developer 3949a7058e45SLawrence Mitchell 39501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3951a7058e45SLawrence Mitchell @*/ 3952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3953d71ae5a4SJacob Faibussowitsch { 3954a7058e45SLawrence Mitchell PetscFunctionBegin; 39555a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39564f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3957dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3958ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 39593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3960a7058e45SLawrence Mitchell } 3961a7058e45SLawrence Mitchell 39620298fd71SBarry Smith PetscFunctionList DMList = NULL; 3963264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3964264ace61SBarry Smith 3965cc4c1da9SBarry Smith /*@ 3966bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3967264ace61SBarry Smith 396820f4b53cSBarry Smith Collective 3969264ace61SBarry Smith 3970264ace61SBarry Smith Input Parameters: 3971bb7acecfSBarry Smith + dm - The `DM` object 3972bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3973264ace61SBarry Smith 3974264ace61SBarry Smith Options Database Key: 3975bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3976264ace61SBarry Smith 3977264ace61SBarry Smith Level: intermediate 3978264ace61SBarry Smith 3979bb7acecfSBarry Smith Note: 39800462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3981bb7acecfSBarry Smith 39821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3983264ace61SBarry Smith @*/ 3984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3985d71ae5a4SJacob Faibussowitsch { 3986264ace61SBarry Smith PetscErrorCode (*r)(DM); 3987264ace61SBarry Smith PetscBool match; 3988264ace61SBarry Smith 3989264ace61SBarry Smith PetscFunctionBegin; 3990264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39923ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3993264ace61SBarry Smith 39949566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39959566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39967a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3997264ace61SBarry Smith 3998dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39999566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 40009566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 40019566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 40023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4003264ace61SBarry Smith } 4004264ace61SBarry Smith 4005cc4c1da9SBarry Smith /*@ 4006bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 4007264ace61SBarry Smith 4008264ace61SBarry Smith Not Collective 4009264ace61SBarry Smith 4010264ace61SBarry Smith Input Parameter: 4011bb7acecfSBarry Smith . dm - The `DM` 4012264ace61SBarry Smith 4013264ace61SBarry Smith Output Parameter: 4014bb7acecfSBarry Smith . type - The `DMType` name 4015264ace61SBarry Smith 4016264ace61SBarry Smith Level: intermediate 4017264ace61SBarry Smith 40181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 4019264ace61SBarry Smith @*/ 4020d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 4021d71ae5a4SJacob Faibussowitsch { 4022264ace61SBarry Smith PetscFunctionBegin; 4023264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40244f572ea9SToby Isaac PetscAssertPointer(type, 2); 40259566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 4026264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 40273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4028264ace61SBarry Smith } 4029264ace61SBarry Smith 40305d83a8b1SBarry Smith /*@ 4031bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 403267a56275SMatthew G Knepley 403320f4b53cSBarry Smith Collective 403467a56275SMatthew G Knepley 403567a56275SMatthew G Knepley Input Parameters: 4036bb7acecfSBarry Smith + dm - the `DM` 4037bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 403867a56275SMatthew G Knepley 403967a56275SMatthew G Knepley Output Parameter: 4040bb7acecfSBarry Smith . M - pointer to new `DM` 404167a56275SMatthew G Knepley 404220f4b53cSBarry Smith Level: intermediate 404320f4b53cSBarry Smith 404473ff1848SBarry Smith Note: 4045bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 4046bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 4047bb7acecfSBarry Smith of the input `DM`. 404867a56275SMatthew G Knepley 40491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 405067a56275SMatthew G Knepley @*/ 4051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 4052d71ae5a4SJacob Faibussowitsch { 405367a56275SMatthew G Knepley DM B; 405467a56275SMatthew G Knepley char convname[256]; 4055c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 405667a56275SMatthew G Knepley 405767a56275SMatthew G Knepley PetscFunctionBegin; 405867a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 405967a56275SMatthew G Knepley PetscValidType(dm, 1); 40604f572ea9SToby Isaac PetscAssertPointer(M, 3); 40619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 40629566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 4063c067b6caSMatthew G. Knepley if (sametype) { 4064c067b6caSMatthew G. Knepley *M = dm; 40659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 40663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4067c067b6caSMatthew G. Knepley } else { 40680298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 406967a56275SMatthew G Knepley 407067a56275SMatthew G Knepley /* 407167a56275SMatthew G Knepley Order of precedence: 407267a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 407367a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 407467a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 407567a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 407667a56275SMatthew G Knepley 5) Use a really basic converter. 407767a56275SMatthew G Knepley */ 407867a56275SMatthew G Knepley 407967a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40809566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40819566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40829566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40839566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40849566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40859566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 408667a56275SMatthew G Knepley if (conv) goto foundconv; 408767a56275SMatthew G Knepley 408867a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40899566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40909566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40919566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40929566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40939566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40949566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40959566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40969566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 409767a56275SMatthew G Knepley if (conv) { 40989566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 409967a56275SMatthew G Knepley goto foundconv; 410067a56275SMatthew G Knepley } 410167a56275SMatthew G Knepley 410267a56275SMatthew G Knepley #if 0 410367a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 410467a56275SMatthew G Knepley conv = B->ops->convertfrom; 41059566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 410667a56275SMatthew G Knepley if (conv) goto foundconv; 410767a56275SMatthew G Knepley 410867a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 410967a56275SMatthew G Knepley if (dm->ops->convert) { 411067a56275SMatthew G Knepley conv = dm->ops->convert; 411167a56275SMatthew G Knepley } 411267a56275SMatthew G Knepley if (conv) goto foundconv; 411367a56275SMatthew G Knepley #endif 411467a56275SMatthew G Knepley 411567a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 411698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 411767a56275SMatthew G Knepley 411867a56275SMatthew G Knepley foundconv: 41199566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 41209566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 412112fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 412290b157c4SStefano Zampini { 41234fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 41246858538eSMatthew G. Knepley 41254fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 41264fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4127c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 41289566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 41299566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 41309566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 41319566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 413212fa691eSMatthew G. Knepley } 41339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 413467a56275SMatthew G Knepley } 41359566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 41363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 413767a56275SMatthew G Knepley } 4138264ace61SBarry Smith 4139264ace61SBarry Smith /*@C 4140bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 41411c84c290SBarry Smith 4142cc4c1da9SBarry Smith Not Collective, No Fortran Support 41431c84c290SBarry Smith 41441c84c290SBarry Smith Input Parameters: 414520f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 414620f4b53cSBarry Smith - function - The creation routine itself 414720f4b53cSBarry Smith 414820f4b53cSBarry Smith Level: advanced 41491c84c290SBarry Smith 415073ff1848SBarry Smith Note: 415120f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 41521c84c290SBarry Smith 415360225df5SJacob Faibussowitsch Example Usage: 41541c84c290SBarry Smith .vb 4155bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 41561c84c290SBarry Smith .ve 41571c84c290SBarry Smith 415820f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 41591c84c290SBarry Smith .vb 41601c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 41611c84c290SBarry Smith DMSetType(DM,"my_da"); 41621c84c290SBarry Smith .ve 41631c84c290SBarry Smith or at runtime via the option 41641c84c290SBarry Smith .vb 41651c84c290SBarry Smith -da_type my_da 41661c84c290SBarry Smith .ve 4167264ace61SBarry Smith 41681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4169264ace61SBarry Smith @*/ 4170d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4171d71ae5a4SJacob Faibussowitsch { 4172264ace61SBarry Smith PetscFunctionBegin; 41739566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41749566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4176264ace61SBarry Smith } 4177264ace61SBarry Smith 4178ffeef943SBarry Smith /*@ 4179bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4180b859378eSBarry Smith 418120f4b53cSBarry Smith Collective 4182b859378eSBarry Smith 4183b859378eSBarry Smith Input Parameters: 4184bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4185bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4186bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4187bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4188b859378eSBarry Smith 4189b859378eSBarry Smith Level: intermediate 4190b859378eSBarry Smith 4191b859378eSBarry Smith Notes: 419255849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4193b859378eSBarry Smith 4194bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4195bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4196bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4197cd7e8a5eSksagiyam 41981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4199b859378eSBarry Smith @*/ 4200d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4201d71ae5a4SJacob Faibussowitsch { 42029331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4203b859378eSBarry Smith 4204b859378eSBarry Smith PetscFunctionBegin; 4205b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4206b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 42079566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 42089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 42099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 42109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 42119331c7a4SMatthew G. Knepley if (isbinary) { 42129331c7a4SMatthew G. Knepley PetscInt classid; 42139331c7a4SMatthew G. Knepley char type[256]; 4214b859378eSBarry Smith 42159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 4216835f2295SStefano Zampini PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid); 42179566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 42189566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4219dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42209331c7a4SMatthew G. Knepley } else if (ishdf5) { 4221dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 42229331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 42239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 42243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4225b859378eSBarry Smith } 4226b859378eSBarry Smith 42274ee01570SBarry Smith /* FEM Support */ 42287da65231SMatthew G Knepley 42292ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 42302ecf6ec3SMatthew G. Knepley { 42312ecf6ec3SMatthew G. Knepley PetscInt f; 42322ecf6ec3SMatthew G. Knepley 42332ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 42342ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42352ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 42362ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42372ecf6ec3SMatthew G. Knepley } 42382ecf6ec3SMatthew G. Knepley 4239d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4240d71ae5a4SJacob Faibussowitsch { 42411d47ebbbSSatish Balay PetscInt f; 42421b30c384SMatthew G Knepley 42437da65231SMatthew G Knepley PetscFunctionBegin; 424463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 424548a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 42463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42477da65231SMatthew G Knepley } 42487da65231SMatthew G Knepley 42495962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 42505962854dSMatthew G. Knepley { 42515962854dSMatthew G. Knepley PetscInt f; 42525962854dSMatthew G. Knepley 42535962854dSMatthew G. Knepley PetscFunctionBegin; 42545962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42555962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 42565962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 42575962854dSMatthew G. Knepley } 42585962854dSMatthew G. Knepley 4259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4260d71ae5a4SJacob Faibussowitsch { 42611b30c384SMatthew G Knepley PetscInt f, g; 42627da65231SMatthew G Knepley 42637da65231SMatthew G Knepley PetscFunctionBegin; 426463a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42651d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 426748a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42689566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42697da65231SMatthew G Knepley } 42703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42717da65231SMatthew G Knepley } 4272e7c4fc90SDmitry Karpeev 4273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4274d71ae5a4SJacob Faibussowitsch { 42750c5b8624SToby Isaac PetscInt localSize, bs; 42760c5b8624SToby Isaac PetscMPIInt size; 42770c5b8624SToby Isaac Vec x, xglob; 42780c5b8624SToby Isaac const PetscScalar *xarray; 4279e759306cSMatthew G. Knepley 4280e759306cSMatthew G. Knepley PetscFunctionBegin; 42819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42829566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42839566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 428493ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42859566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42860c5b8624SToby Isaac if (size > 1) { 42879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42899566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42909566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42910c5b8624SToby Isaac } else { 42920c5b8624SToby Isaac xglob = x; 42930c5b8624SToby Isaac } 42949566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42950c5b8624SToby Isaac if (size > 1) { 42969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42979566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42980c5b8624SToby Isaac } 42999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 43003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4301e759306cSMatthew G. Knepley } 4302e759306cSMatthew G. Knepley 430388ed4aceSMatthew G Knepley /*@ 4304bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 430588ed4aceSMatthew G Knepley 430688ed4aceSMatthew G Knepley Input Parameter: 4307bb7acecfSBarry Smith . dm - The `DM` 430888ed4aceSMatthew G Knepley 430988ed4aceSMatthew G Knepley Output Parameter: 4310bb7acecfSBarry Smith . section - The `PetscSection` 431188ed4aceSMatthew G Knepley 431220f4b53cSBarry Smith Options Database Key: 4313bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4314e5893cccSMatthew G. Knepley 431588ed4aceSMatthew G Knepley Level: intermediate 431688ed4aceSMatthew G Knepley 4317bb7acecfSBarry Smith Note: 4318bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 431988ed4aceSMatthew G Knepley 43201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 432188ed4aceSMatthew G Knepley @*/ 4322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4323d71ae5a4SJacob Faibussowitsch { 432488ed4aceSMatthew G Knepley PetscFunctionBegin; 432588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43264f572ea9SToby Isaac PetscAssertPointer(section, 2); 43271bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4328e5e52638SMatthew G. Knepley PetscInt d; 4329e5e52638SMatthew G. Knepley 433045480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 433145480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 433245480ffeSMatthew G. Knepley PetscViewer viewer; 433345480ffeSMatthew G. Knepley PetscViewerFormat format; 433445480ffeSMatthew G. Knepley PetscBool flg; 433545480ffeSMatthew G. Knepley 4336648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43379566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 433845480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43399566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43409566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 434145480ffeSMatthew G. Knepley } 434245480ffeSMatthew G. Knepley if (flg) { 43439566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43449566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4345648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 434645480ffeSMatthew G. Knepley } 434745480ffeSMatthew G. Knepley } 4348dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43499566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43502f0f8703SMatthew G. Knepley } 43511bb6d2a8SBarry Smith *section = dm->localSection; 43523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 435388ed4aceSMatthew G Knepley } 435488ed4aceSMatthew G Knepley 435588ed4aceSMatthew G Knepley /*@ 4356bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 435788ed4aceSMatthew G Knepley 435888ed4aceSMatthew G Knepley Input Parameters: 4359bb7acecfSBarry Smith + dm - The `DM` 4360bb7acecfSBarry Smith - section - The `PetscSection` 436188ed4aceSMatthew G Knepley 436288ed4aceSMatthew G Knepley Level: intermediate 436388ed4aceSMatthew G Knepley 4364bb7acecfSBarry Smith Note: 4365bb7acecfSBarry Smith Any existing Section will be destroyed 436688ed4aceSMatthew G Knepley 43671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 436888ed4aceSMatthew G Knepley @*/ 4369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4370d71ae5a4SJacob Faibussowitsch { 4371c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4372af122d2aSMatthew G Knepley PetscInt f; 437388ed4aceSMatthew G Knepley 437488ed4aceSMatthew G Knepley PetscFunctionBegin; 437588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4376b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43789566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43791bb6d2a8SBarry Smith dm->localSection = section; 43809566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4381af122d2aSMatthew G Knepley if (numFields) { 43829566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4383af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43840f21e855SMatthew G. Knepley PetscObject disc; 4385af122d2aSMatthew G Knepley const char *name; 4386af122d2aSMatthew G Knepley 43879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43889566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43899566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4390af122d2aSMatthew G Knepley } 4391af122d2aSMatthew G Knepley } 439250350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 439350350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43949566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 439550350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 439652947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 439750350c8eSStefano Zampini 439850350c8eSStefano Zampini /* Clear scratch vectors */ 439950350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 440050350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 440150350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 440250350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 44033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 440488ed4aceSMatthew G Knepley } 440588ed4aceSMatthew G Knepley 4406adc21957SMatthew G. Knepley /*@C 4407d8b4a066SPierre Jolivet DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure. 4408adc21957SMatthew G. Knepley 4409adc21957SMatthew G. Knepley Input Parameter: 4410adc21957SMatthew G. Knepley . dm - The `DM` 4411adc21957SMatthew G. Knepley 44129cde84edSJose E. Roman Output Parameters: 4413adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4414b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking 4415adc21957SMatthew G. Knepley 4416adc21957SMatthew G. Knepley Level: developer 4417adc21957SMatthew G. Knepley 4418adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4419adc21957SMatthew G. Knepley @*/ 4420adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4421adc21957SMatthew G. Knepley { 4422adc21957SMatthew G. Knepley PetscFunctionBegin; 4423adc21957SMatthew G. Knepley *perm = NULL; 4424adc21957SMatthew G. Knepley *blockStarts = NULL; 4425adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4426adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4427adc21957SMatthew G. Knepley } 4428adc21957SMatthew G. Knepley 44299435951eSToby Isaac /*@ 4430bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44319435951eSToby Isaac 443220f4b53cSBarry Smith not Collective 4433e228b242SToby Isaac 44349435951eSToby Isaac Input Parameter: 4435bb7acecfSBarry Smith . dm - The `DM` 44369435951eSToby Isaac 4437d8d19677SJose E. Roman Output Parameters: 443820f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 443920f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 444079769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44419435951eSToby Isaac 44429435951eSToby Isaac Level: advanced 44439435951eSToby Isaac 4444bb7acecfSBarry Smith Note: 4445bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44469435951eSToby Isaac 44471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44489435951eSToby Isaac @*/ 4449d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4450d71ae5a4SJacob Faibussowitsch { 44519435951eSToby Isaac PetscFunctionBegin; 44529435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4453dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44543b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44553b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 445679769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44589435951eSToby Isaac } 44599435951eSToby Isaac 44609435951eSToby Isaac /*@ 4461bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44629435951eSToby Isaac 446320f4b53cSBarry Smith Collective 4464e228b242SToby Isaac 44659435951eSToby Isaac Input Parameters: 4466bb7acecfSBarry Smith + dm - The `DM` 4467bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446820f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 446920f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44709435951eSToby Isaac 44719435951eSToby Isaac Level: advanced 44729435951eSToby Isaac 447320f4b53cSBarry Smith Notes: 447420f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 447520f4b53cSBarry Smith 447620f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 447720f4b53cSBarry Smith 4478bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44799435951eSToby Isaac 44801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44819435951eSToby Isaac @*/ 4482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4483d71ae5a4SJacob Faibussowitsch { 4484e228b242SToby Isaac PetscMPIInt result; 44859435951eSToby Isaac 44869435951eSToby Isaac PetscFunctionBegin; 44879435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4488e228b242SToby Isaac if (section) { 4489e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44917a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4492e228b242SToby Isaac } 4493e228b242SToby Isaac if (mat) { 4494e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44967a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4497e228b242SToby Isaac } 449879769bd5SJed Brown if (bias) { 449979769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 45009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 450179769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 450279769bd5SJed Brown } 45039566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 45049566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 45053b8ba7d1SJed Brown dm->defaultConstraint.section = section; 45069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 45079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 45083b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 45099566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 45109566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 451179769bd5SJed Brown dm->defaultConstraint.bias = bias; 45123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45139435951eSToby Isaac } 45149435951eSToby Isaac 4515497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4516507e4973SMatthew G. Knepley /* 4517bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4518507e4973SMatthew G. Knepley 4519507e4973SMatthew G. Knepley Input Parameters: 4520bb7acecfSBarry Smith + dm - The `DM` 4521bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4522bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4523507e4973SMatthew G. Knepley 4524507e4973SMatthew G. Knepley Level: intermediate 4525507e4973SMatthew G. Knepley 45261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4527507e4973SMatthew G. Knepley */ 4528d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4529d71ae5a4SJacob Faibussowitsch { 4530507e4973SMatthew G. Knepley MPI_Comm comm; 4531507e4973SMatthew G. Knepley PetscLayout layout; 4532507e4973SMatthew G. Knepley const PetscInt *ranges; 4533507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4534507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4535507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4536507e4973SMatthew G. Knepley 4537507e4973SMatthew G. Knepley PetscFunctionBegin; 45389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4539507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45449566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45489566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4549507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4550f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4551507e4973SMatthew G. Knepley 45529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4558507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45599371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45609371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45619371c9d4SSatish Balay valid = PETSC_FALSE; 45629371c9d4SSatish Balay } 45639371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45649371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45659371c9d4SSatish Balay valid = PETSC_FALSE; 45669371c9d4SSatish Balay } 4567507e4973SMatthew G. Knepley if (gdof < 0) { 4568507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4569507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4570507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4571507e4973SMatthew G. Knepley 45729566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4573507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45749371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45759371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45769371c9d4SSatish Balay valid = PETSC_FALSE; 45779371c9d4SSatish Balay break; 45789371c9d4SSatish Balay } 4579507e4973SMatthew G. Knepley } 4580507e4973SMatthew G. Knepley } 4581507e4973SMatthew G. Knepley } 45829566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45839566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 4584462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4585507e4973SMatthew G. Knepley if (!gvalid) { 45869566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4587507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4588507e4973SMatthew G. Knepley } 45893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4590507e4973SMatthew G. Knepley } 4591f741bcd2SMatthew G. Knepley #endif 4592507e4973SMatthew G. Knepley 459390df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45946725e60dSJed Brown { 45956725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45964d86920dSPierre Jolivet 45976725e60dSJed Brown PetscFunctionBegin; 45986725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45994f572ea9SToby Isaac PetscAssertPointer(sf, 2); 46005f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 46016725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 46026725e60dSJed Brown else *sf = dm->sf; 46033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 46046725e60dSJed Brown } 46056725e60dSJed Brown 460688ed4aceSMatthew G Knepley /*@ 4607bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 460888ed4aceSMatthew G Knepley 460920f4b53cSBarry Smith Collective 46108b1ab98fSJed Brown 461188ed4aceSMatthew G Knepley Input Parameter: 4612bb7acecfSBarry Smith . dm - The `DM` 461388ed4aceSMatthew G Knepley 461488ed4aceSMatthew G Knepley Output Parameter: 4615bb7acecfSBarry Smith . section - The `PetscSection` 461688ed4aceSMatthew G Knepley 461788ed4aceSMatthew G Knepley Level: intermediate 461888ed4aceSMatthew G Knepley 4619bb7acecfSBarry Smith Note: 4620bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 462188ed4aceSMatthew G Knepley 46221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 462388ed4aceSMatthew G Knepley @*/ 4624d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4625d71ae5a4SJacob Faibussowitsch { 462688ed4aceSMatthew G Knepley PetscFunctionBegin; 462788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46284f572ea9SToby Isaac PetscAssertPointer(section, 2); 46291bb6d2a8SBarry Smith if (!dm->globalSection) { 4630fd59a867SMatthew G. Knepley PetscSection s; 46316725e60dSJed Brown PetscSF sf; 4632fd59a867SMatthew G. Knepley 46339566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46347a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46357a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46365f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4637eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46389566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46409566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 464188ed4aceSMatthew G Knepley } 46421bb6d2a8SBarry Smith *section = dm->globalSection; 46433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464488ed4aceSMatthew G Knepley } 464588ed4aceSMatthew G Knepley 4646b21d0597SMatthew G Knepley /*@ 4647bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4648b21d0597SMatthew G Knepley 4649b21d0597SMatthew G Knepley Input Parameters: 4650bb7acecfSBarry Smith + dm - The `DM` 46512fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4652b21d0597SMatthew G Knepley 4653b21d0597SMatthew G Knepley Level: intermediate 4654b21d0597SMatthew G Knepley 4655bb7acecfSBarry Smith Note: 4656bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4657b21d0597SMatthew G Knepley 46581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4659b21d0597SMatthew G Knepley @*/ 4660d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4661d71ae5a4SJacob Faibussowitsch { 4662b21d0597SMatthew G Knepley PetscFunctionBegin; 4663b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46645080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46669566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46671bb6d2a8SBarry Smith dm->globalSection = section; 4668497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46699566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4670507e4973SMatthew G. Knepley #endif 467150350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 467250350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 467352947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 467450350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 467550350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4677b21d0597SMatthew G Knepley } 4678b21d0597SMatthew G Knepley 467988ed4aceSMatthew G Knepley /*@ 4680bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4681bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 468288ed4aceSMatthew G Knepley 468388ed4aceSMatthew G Knepley Input Parameter: 4684bb7acecfSBarry Smith . dm - The `DM` 468588ed4aceSMatthew G Knepley 468688ed4aceSMatthew G Knepley Output Parameter: 4687bb7acecfSBarry Smith . sf - The `PetscSF` 468888ed4aceSMatthew G Knepley 468988ed4aceSMatthew G Knepley Level: intermediate 469088ed4aceSMatthew G Knepley 4691bb7acecfSBarry Smith Note: 4692bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 469388ed4aceSMatthew G Knepley 46941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 469588ed4aceSMatthew G Knepley @*/ 4696d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4697d71ae5a4SJacob Faibussowitsch { 469888ed4aceSMatthew G Knepley PetscInt nroots; 469988ed4aceSMatthew G Knepley 470088ed4aceSMatthew G Knepley PetscFunctionBegin; 470188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47024f572ea9SToby Isaac PetscAssertPointer(sf, 2); 470348a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 47049566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 470588ed4aceSMatthew G Knepley if (nroots < 0) { 470688ed4aceSMatthew G Knepley PetscSection section, gSection; 470788ed4aceSMatthew G Knepley 47089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 470931ea6d37SMatthew G Knepley if (section) { 47109566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 47119566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 471231ea6d37SMatthew G Knepley } else { 47130298fd71SBarry Smith *sf = NULL; 47143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471531ea6d37SMatthew G Knepley } 471688ed4aceSMatthew G Knepley } 47171bb6d2a8SBarry Smith *sf = dm->sectionSF; 47183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471988ed4aceSMatthew G Knepley } 472088ed4aceSMatthew G Knepley 472188ed4aceSMatthew G Knepley /*@ 4722bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 472388ed4aceSMatthew G Knepley 472488ed4aceSMatthew G Knepley Input Parameters: 4725bb7acecfSBarry Smith + dm - The `DM` 4726bb7acecfSBarry Smith - sf - The `PetscSF` 472788ed4aceSMatthew G Knepley 472888ed4aceSMatthew G Knepley Level: intermediate 472988ed4aceSMatthew G Knepley 4730bb7acecfSBarry Smith Note: 4731bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 473288ed4aceSMatthew G Knepley 47331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 473488ed4aceSMatthew G Knepley @*/ 4735d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4736d71ae5a4SJacob Faibussowitsch { 473788ed4aceSMatthew G Knepley PetscFunctionBegin; 473888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4739b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47421bb6d2a8SBarry Smith dm->sectionSF = sf; 47433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474488ed4aceSMatthew G Knepley } 474588ed4aceSMatthew G Knepley 4746cc4c1da9SBarry Smith /*@ 4747bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 474888ed4aceSMatthew G Knepley describing the data layout. 474988ed4aceSMatthew G Knepley 475088ed4aceSMatthew G Knepley Input Parameters: 4751bb7acecfSBarry Smith + dm - The `DM` 4752bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4753bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 475488ed4aceSMatthew G Knepley 47551bb6d2a8SBarry Smith Level: developer 47561bb6d2a8SBarry Smith 4757bb7acecfSBarry Smith Note: 4758bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4759bb7acecfSBarry Smith 476073ff1848SBarry Smith Developer Note: 4761bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4762bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4763b6971eaeSBarry Smith input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing 4764b6971eaeSBarry Smith they create, this returns nothing 47651bb6d2a8SBarry Smith 47661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 476788ed4aceSMatthew G Knepley @*/ 4768d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4769d71ae5a4SJacob Faibussowitsch { 477088ed4aceSMatthew G Knepley PetscFunctionBegin; 477188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47729566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 477488ed4aceSMatthew G Knepley } 4775af122d2aSMatthew G Knepley 4776b21d0597SMatthew G Knepley /*@ 4777bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4778bb7acecfSBarry Smith 4779bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4780b21d0597SMatthew G Knepley 4781b21d0597SMatthew G Knepley Input Parameter: 4782bb7acecfSBarry Smith . dm - The `DM` 4783b21d0597SMatthew G Knepley 4784b21d0597SMatthew G Knepley Output Parameter: 4785bb7acecfSBarry Smith . sf - The `PetscSF` 4786b21d0597SMatthew G Knepley 4787b21d0597SMatthew G Knepley Level: intermediate 4788b21d0597SMatthew G Knepley 4789bb7acecfSBarry Smith Note: 4790bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4791b21d0597SMatthew G Knepley 47921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4793b21d0597SMatthew G Knepley @*/ 4794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4795d71ae5a4SJacob Faibussowitsch { 4796b21d0597SMatthew G Knepley PetscFunctionBegin; 4797b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47984f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4799b21d0597SMatthew G Knepley *sf = dm->sf; 48003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4801b21d0597SMatthew G Knepley } 4802b21d0597SMatthew G Knepley 4803057b4bcdSMatthew G Knepley /*@ 4804bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4805bb7acecfSBarry Smith 480620f4b53cSBarry Smith Collective 4807057b4bcdSMatthew G Knepley 4808057b4bcdSMatthew G Knepley Input Parameters: 4809bb7acecfSBarry Smith + dm - The `DM` 4810bb7acecfSBarry Smith - sf - The `PetscSF` 4811057b4bcdSMatthew G Knepley 4812057b4bcdSMatthew G Knepley Level: intermediate 4813057b4bcdSMatthew G Knepley 48141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4815057b4bcdSMatthew G Knepley @*/ 4816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4817d71ae5a4SJacob Faibussowitsch { 4818057b4bcdSMatthew G Knepley PetscFunctionBegin; 4819057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4820b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4823057b4bcdSMatthew G Knepley dm->sf = sf; 48243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4825057b4bcdSMatthew G Knepley } 4826057b4bcdSMatthew G Knepley 48274f37162bSMatthew G. Knepley /*@ 4828bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48294f37162bSMatthew G. Knepley 48304f37162bSMatthew G. Knepley Input Parameter: 4831bb7acecfSBarry Smith . dm - The `DM` 48324f37162bSMatthew G. Knepley 48334f37162bSMatthew G. Knepley Output Parameter: 4834bb7acecfSBarry Smith . sf - The `PetscSF` 48354f37162bSMatthew G. Knepley 48364f37162bSMatthew G. Knepley Level: intermediate 48374f37162bSMatthew G. Knepley 4838bb7acecfSBarry Smith Note: 4839bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48404f37162bSMatthew G. Knepley 48411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48424f37162bSMatthew G. Knepley @*/ 4843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4844d71ae5a4SJacob Faibussowitsch { 48454f37162bSMatthew G. Knepley PetscFunctionBegin; 48464f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48474f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48484f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48504f37162bSMatthew G. Knepley } 48514f37162bSMatthew G. Knepley 48524f37162bSMatthew G. Knepley /*@ 48534f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48544f37162bSMatthew G. Knepley 48554f37162bSMatthew G. Knepley Input Parameters: 48564f37162bSMatthew G. Knepley + dm - The DM 48574f37162bSMatthew G. Knepley - sf - The PetscSF 48584f37162bSMatthew G. Knepley 48594f37162bSMatthew G. Knepley Level: intermediate 48604f37162bSMatthew G. Knepley 48611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48624f37162bSMatthew G. Knepley @*/ 4863d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4864d71ae5a4SJacob Faibussowitsch { 48654f37162bSMatthew G. Knepley PetscFunctionBegin; 48664f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48674f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48689566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48704f37162bSMatthew G. Knepley dm->sfNatural = sf; 48713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48724f37162bSMatthew G. Knepley } 48734f37162bSMatthew G. Knepley 4874d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4875d71ae5a4SJacob Faibussowitsch { 487634aa8a36SMatthew G. Knepley PetscClassId id; 487734aa8a36SMatthew G. Knepley 487834aa8a36SMatthew G. Knepley PetscFunctionBegin; 48799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 488034aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48819566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488234aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48839566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 488417c1d62eSMatthew G. Knepley } else { 48859566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 488634aa8a36SMatthew G. Knepley } 48873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 488834aa8a36SMatthew G. Knepley } 488934aa8a36SMatthew G. Knepley 4890d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4891d71ae5a4SJacob Faibussowitsch { 489244a7f3ddSMatthew G. Knepley RegionField *tmpr; 489344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 489444a7f3ddSMatthew G. Knepley 489544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48963ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 489844a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48999371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 49009371c9d4SSatish Balay tmpr[f].disc = NULL; 49019371c9d4SSatish Balay tmpr[f].label = NULL; 49029371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 49039371c9d4SSatish Balay } 49049566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 490544a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 490644a7f3ddSMatthew G. Knepley dm->fields = tmpr; 49073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490844a7f3ddSMatthew G. Knepley } 490944a7f3ddSMatthew G. Knepley 491044a7f3ddSMatthew G. Knepley /*@ 491120f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 491244a7f3ddSMatthew G. Knepley 491320f4b53cSBarry Smith Logically Collective 491444a7f3ddSMatthew G. Knepley 491544a7f3ddSMatthew G. Knepley Input Parameter: 491620f4b53cSBarry Smith . dm - The `DM` 491744a7f3ddSMatthew G. Knepley 491844a7f3ddSMatthew G. Knepley Level: intermediate 491944a7f3ddSMatthew G. Knepley 49201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 492144a7f3ddSMatthew G. Knepley @*/ 4922d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4923d71ae5a4SJacob Faibussowitsch { 492444a7f3ddSMatthew G. Knepley PetscInt f; 492544a7f3ddSMatthew G. Knepley 492644a7f3ddSMatthew G. Knepley PetscFunctionBegin; 492744a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49284c4edb6fSBarry Smith if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); // DMDA does not use fields field in DM 492944a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49309566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49319566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 493244a7f3ddSMatthew G. Knepley } 49339566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 493444a7f3ddSMatthew G. Knepley dm->fields = NULL; 493544a7f3ddSMatthew G. Knepley dm->Nf = 0; 49363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 493744a7f3ddSMatthew G. Knepley } 493844a7f3ddSMatthew G. Knepley 4939689b5837SMatthew G. Knepley /*@ 494020f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4941689b5837SMatthew G. Knepley 494220f4b53cSBarry Smith Not Collective 4943689b5837SMatthew G. Knepley 4944689b5837SMatthew G. Knepley Input Parameter: 494520f4b53cSBarry Smith . dm - The `DM` 4946689b5837SMatthew G. Knepley 4947689b5837SMatthew G. Knepley Output Parameter: 494860225df5SJacob Faibussowitsch . numFields - The number of fields 4949689b5837SMatthew G. Knepley 4950689b5837SMatthew G. Knepley Level: intermediate 4951689b5837SMatthew G. Knepley 49521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4953689b5837SMatthew G. Knepley @*/ 4954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4955d71ae5a4SJacob Faibussowitsch { 49560f21e855SMatthew G. Knepley PetscFunctionBegin; 49570f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49584f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 495944a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4961af122d2aSMatthew G Knepley } 4962af122d2aSMatthew G Knepley 4963689b5837SMatthew G. Knepley /*@ 496420f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4965689b5837SMatthew G. Knepley 496620f4b53cSBarry Smith Logically Collective 4967689b5837SMatthew G. Knepley 4968689b5837SMatthew G. Knepley Input Parameters: 496920f4b53cSBarry Smith + dm - The `DM` 497060225df5SJacob Faibussowitsch - numFields - The number of fields 4971689b5837SMatthew G. Knepley 4972689b5837SMatthew G. Knepley Level: intermediate 4973689b5837SMatthew G. Knepley 49741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4975689b5837SMatthew G. Knepley @*/ 4976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4977d71ae5a4SJacob Faibussowitsch { 49780f21e855SMatthew G. Knepley PetscInt Nf, f; 4979af122d2aSMatthew G Knepley 4980af122d2aSMatthew G Knepley PetscFunctionBegin; 4981af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49829566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49830f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49840f21e855SMatthew G. Knepley PetscContainer obj; 49850f21e855SMatthew G. Knepley 49869566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49879566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49889566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4989af122d2aSMatthew G Knepley } 49903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4991af122d2aSMatthew G Knepley } 4992af122d2aSMatthew G Knepley 4993c1929be8SMatthew G. Knepley /*@ 4994bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4995c1929be8SMatthew G. Knepley 499620f4b53cSBarry Smith Not Collective 4997c1929be8SMatthew G. Knepley 4998c1929be8SMatthew G. Knepley Input Parameters: 4999bb7acecfSBarry Smith + dm - The `DM` 5000c1929be8SMatthew G. Knepley - f - The field number 5001c1929be8SMatthew G. Knepley 500244a7f3ddSMatthew G. Knepley Output Parameters: 500320f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 500420f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 5005c1929be8SMatthew G. Knepley 500644a7f3ddSMatthew G. Knepley Level: intermediate 5007c1929be8SMatthew G. Knepley 50081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 5009c1929be8SMatthew G. Knepley @*/ 5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 5011d71ae5a4SJacob Faibussowitsch { 5012af122d2aSMatthew G Knepley PetscFunctionBegin; 5013af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50144f572ea9SToby Isaac PetscAssertPointer(disc, 4); 50157a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 50164c4edb6fSBarry Smith if (!dm->fields) { 50174c4edb6fSBarry Smith if (label) *label = NULL; 50184c4edb6fSBarry Smith if (disc) *disc = NULL; 50194c4edb6fSBarry Smith } else { // some DM such as DMDA do not have dm->fields 502044a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5021bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50224c4edb6fSBarry Smith } 50233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5024decb47aaSMatthew G. Knepley } 5025decb47aaSMatthew G. Knepley 5026083401c6SMatthew G. Knepley /* Does not clear the DS */ 5027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5028d71ae5a4SJacob Faibussowitsch { 5029083401c6SMatthew G. Knepley PetscFunctionBegin; 50309566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50319566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50329566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5033083401c6SMatthew G. Knepley dm->fields[f].label = label; 5034bb7acecfSBarry Smith dm->fields[f].disc = disc; 50359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5036835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 50373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5038083401c6SMatthew G. Knepley } 5039083401c6SMatthew G. Knepley 5040ffeef943SBarry Smith /*@ 5041bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5042bb7acecfSBarry Smith the field numbering. 5043c1929be8SMatthew G. Knepley 504420f4b53cSBarry Smith Logically Collective 5045c1929be8SMatthew G. Knepley 5046c1929be8SMatthew G. Knepley Input Parameters: 5047bb7acecfSBarry Smith + dm - The `DM` 5048c1929be8SMatthew G. Knepley . f - The field number 504920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5050bb7acecfSBarry Smith - disc - The discretization object 5051c1929be8SMatthew G. Knepley 505244a7f3ddSMatthew G. Knepley Level: intermediate 5053c1929be8SMatthew G. Knepley 50541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5055c1929be8SMatthew G. Knepley @*/ 5056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5057d71ae5a4SJacob Faibussowitsch { 5058decb47aaSMatthew G. Knepley PetscFunctionBegin; 5059decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5060e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5061bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50627a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5063bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5064bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50659566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506744a7f3ddSMatthew G. Knepley } 506844a7f3ddSMatthew G. Knepley 5069ffeef943SBarry Smith /*@ 5070bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5071bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 507244a7f3ddSMatthew G. Knepley 507320f4b53cSBarry Smith Logically Collective 507444a7f3ddSMatthew G. Knepley 507544a7f3ddSMatthew G. Knepley Input Parameters: 5076bb7acecfSBarry Smith + dm - The `DM` 507720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5078bb7acecfSBarry Smith - disc - The discretization object 507944a7f3ddSMatthew G. Knepley 508044a7f3ddSMatthew G. Knepley Level: intermediate 508144a7f3ddSMatthew G. Knepley 5082bb7acecfSBarry Smith Notes: 5083bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5084bb7acecfSBarry Smith 5085da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5086bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5087bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5088bb7acecfSBarry Smith 5089ce78bad3SBarry Smith Fortran Note: 5090ce78bad3SBarry Smith Use the argument `PetscObjectCast(disc)` as the second argument 5091ce78bad3SBarry Smith 50921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 509344a7f3ddSMatthew G. Knepley @*/ 5094d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5095d71ae5a4SJacob Faibussowitsch { 509644a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 509744a7f3ddSMatthew G. Knepley 509844a7f3ddSMatthew G. Knepley PetscFunctionBegin; 509944a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5100064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5101bb7acecfSBarry Smith PetscValidHeader(disc, 3); 51029566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 510344a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5104bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 51059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5106835f2295SStefano Zampini PetscCall(PetscObjectReference(disc)); 5107bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 51089566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 51093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5110af122d2aSMatthew G Knepley } 51116636e97aSMatthew G Knepley 5112e5e52638SMatthew G. Knepley /*@ 5113e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5114e0b68406SMatthew Knepley 511520f4b53cSBarry Smith Logically Collective 5116e0b68406SMatthew Knepley 5117e0b68406SMatthew Knepley Input Parameters: 5118bb7acecfSBarry Smith + dm - The `DM` 5119e0b68406SMatthew Knepley . f - The field index 5120bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5121e0b68406SMatthew Knepley 5122e0b68406SMatthew Knepley Level: intermediate 5123e0b68406SMatthew Knepley 51241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5125e0b68406SMatthew Knepley @*/ 5126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5127d71ae5a4SJacob Faibussowitsch { 5128e0b68406SMatthew Knepley PetscFunctionBegin; 512963a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5130e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5132e0b68406SMatthew Knepley } 5133e0b68406SMatthew Knepley 5134e0b68406SMatthew Knepley /*@ 5135e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5136e0b68406SMatthew Knepley 513720f4b53cSBarry Smith Not Collective 5138e0b68406SMatthew Knepley 5139e0b68406SMatthew Knepley Input Parameters: 5140bb7acecfSBarry Smith + dm - The `DM` 5141e0b68406SMatthew Knepley - f - The field index 5142e0b68406SMatthew Knepley 5143e0b68406SMatthew Knepley Output Parameter: 5144e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5145e0b68406SMatthew Knepley 5146e0b68406SMatthew Knepley Level: intermediate 5147e0b68406SMatthew Knepley 514860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5149e0b68406SMatthew Knepley @*/ 5150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5151d71ae5a4SJacob Faibussowitsch { 5152e0b68406SMatthew Knepley PetscFunctionBegin; 515363a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5154e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5156e0b68406SMatthew Knepley } 5157e0b68406SMatthew Knepley 5158e0b68406SMatthew Knepley /*@ 5159bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5160e5e52638SMatthew G. Knepley 516120f4b53cSBarry Smith Collective 5162e5e52638SMatthew G. Knepley 5163bb4b53efSMatthew G. Knepley Input Parameters: 5164bb4b53efSMatthew G. Knepley + dm - The `DM` 5165bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 5166bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 5167e5e52638SMatthew G. Knepley 5168e5e52638SMatthew G. Knepley Output Parameter: 5169bb7acecfSBarry Smith . newdm - The `DM` 5170e5e52638SMatthew G. Knepley 5171e5e52638SMatthew G. Knepley Level: advanced 5172e5e52638SMatthew G. Knepley 51731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5174e5e52638SMatthew G. Knepley @*/ 5175bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 5176d71ae5a4SJacob Faibussowitsch { 5177e5e52638SMatthew G. Knepley PetscInt Nf, f; 5178e5e52638SMatthew G. Knepley 5179e5e52638SMatthew G. Knepley PetscFunctionBegin; 51803ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51819566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51829566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5183e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5184e5e52638SMatthew G. Knepley DMLabel label; 5185e5e52638SMatthew G. Knepley PetscObject field; 5186bb4b53efSMatthew G. Knepley PetscClassId id; 518734aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5188e5e52638SMatthew G. Knepley 51899566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 5190bb4b53efSMatthew G. Knepley PetscCall(PetscObjectGetClassId(field, &id)); 5191bb4b53efSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5192bb4b53efSMatthew G. Knepley PetscFE newfe; 5193bb4b53efSMatthew G. Knepley 5194bb4b53efSMatthew G. Knepley PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe)); 5195bb4b53efSMatthew G. Knepley PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe)); 5196bb4b53efSMatthew G. Knepley PetscCall(PetscFEDestroy(&newfe)); 5197bb4b53efSMatthew G. Knepley } else { 51989566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 5199bb4b53efSMatthew G. Knepley } 52009566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 52019566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 520234aa8a36SMatthew G. Knepley } 5203*4758e3ceSMatthew G. Knepley // Create nullspace constructor slots 5204*4758e3ceSMatthew G. Knepley if (dm->nullspaceConstructors) { 5205*4758e3ceSMatthew G. Knepley PetscCall(PetscFree2(newdm->nullspaceConstructors, newdm->nearnullspaceConstructors)); 5206*4758e3ceSMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &newdm->nullspaceConstructors, Nf, &newdm->nearnullspaceConstructors)); 5207*4758e3ceSMatthew G. Knepley } 52083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520934aa8a36SMatthew G. Knepley } 521034aa8a36SMatthew G. Knepley 521134aa8a36SMatthew G. Knepley /*@ 521234aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 521334aa8a36SMatthew G. Knepley 521420f4b53cSBarry Smith Not Collective 521534aa8a36SMatthew G. Knepley 521634aa8a36SMatthew G. Knepley Input Parameters: 521720f4b53cSBarry Smith + dm - The `DM` object 521820f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 521934aa8a36SMatthew G. Knepley 5220d8d19677SJose E. Roman Output Parameters: 522134aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 522234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 522334aa8a36SMatthew G. Knepley 522434aa8a36SMatthew G. Knepley Level: developer 522534aa8a36SMatthew G. Knepley 522620f4b53cSBarry Smith Notes: 522720f4b53cSBarry Smith .vb 522820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 522920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 523020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 523120f4b53cSBarry Smith .ve 523220f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 523320f4b53cSBarry Smith 52341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 523534aa8a36SMatthew G. Knepley @*/ 5236d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5237d71ae5a4SJacob Faibussowitsch { 523834aa8a36SMatthew G. Knepley PetscFunctionBegin; 523934aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52404f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52414f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 524234aa8a36SMatthew G. Knepley if (f < 0) { 524334aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 524434aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 524534aa8a36SMatthew G. Knepley } else { 524634aa8a36SMatthew G. Knepley PetscInt Nf; 524734aa8a36SMatthew G. Knepley 52489566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52497a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 525034aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 525134aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 525234aa8a36SMatthew G. Knepley } 52533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 525434aa8a36SMatthew G. Knepley } 525534aa8a36SMatthew G. Knepley 525634aa8a36SMatthew G. Knepley /*@ 525734aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 525834aa8a36SMatthew G. Knepley 525920f4b53cSBarry Smith Not Collective 526034aa8a36SMatthew G. Knepley 526134aa8a36SMatthew G. Knepley Input Parameters: 526220f4b53cSBarry Smith + dm - The `DM` object 526334aa8a36SMatthew G. Knepley . f - The field number 526434aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 526534aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 526634aa8a36SMatthew G. Knepley 526734aa8a36SMatthew G. Knepley Level: developer 526834aa8a36SMatthew G. Knepley 526920f4b53cSBarry Smith Notes: 527020f4b53cSBarry Smith .vb 527120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 527220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 527320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 527420f4b53cSBarry Smith .ve 527520f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 527620f4b53cSBarry Smith 52771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 527834aa8a36SMatthew G. Knepley @*/ 5279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5280d71ae5a4SJacob Faibussowitsch { 528134aa8a36SMatthew G. Knepley PetscFunctionBegin; 528234aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 528334aa8a36SMatthew G. Knepley if (f < 0) { 528434aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 528534aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 528634aa8a36SMatthew G. Knepley } else { 528734aa8a36SMatthew G. Knepley PetscInt Nf; 528834aa8a36SMatthew G. Knepley 52899566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52907a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 529134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 529234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5293e5e52638SMatthew G. Knepley } 52943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5295e5e52638SMatthew G. Knepley } 5296e5e52638SMatthew G. Knepley 5297b0441da4SMatthew G. Knepley /*@ 5298b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5299b0441da4SMatthew G. Knepley 5300b0441da4SMatthew G. Knepley Not collective 5301b0441da4SMatthew G. Knepley 5302f899ff85SJose E. Roman Input Parameter: 530320f4b53cSBarry Smith . dm - The `DM` object 5304b0441da4SMatthew G. Knepley 5305d8d19677SJose E. Roman Output Parameters: 5306b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5307b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5308b0441da4SMatthew G. Knepley 5309b0441da4SMatthew G. Knepley Level: developer 5310b0441da4SMatthew G. Knepley 531120f4b53cSBarry Smith Notes: 531220f4b53cSBarry Smith .vb 531320f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 531420f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 531520f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 531620f4b53cSBarry Smith .ve 531720f4b53cSBarry Smith 53181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5319b0441da4SMatthew G. Knepley @*/ 5320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5321d71ae5a4SJacob Faibussowitsch { 5322b0441da4SMatthew G. Knepley PetscInt Nf; 5323b0441da4SMatthew G. Knepley 5324b0441da4SMatthew G. Knepley PetscFunctionBegin; 5325b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53264f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 53274f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 53289566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5329b0441da4SMatthew G. Knepley if (!Nf) { 53309566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5331b0441da4SMatthew G. Knepley } else { 53329566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5333b0441da4SMatthew G. Knepley } 53343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5335b0441da4SMatthew G. Knepley } 5336b0441da4SMatthew G. Knepley 5337b0441da4SMatthew G. Knepley /*@ 5338b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5339b0441da4SMatthew G. Knepley 534020f4b53cSBarry Smith Not Collective 5341b0441da4SMatthew G. Knepley 5342b0441da4SMatthew G. Knepley Input Parameters: 534320f4b53cSBarry Smith + dm - The `DM` object 5344b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5345b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5346b0441da4SMatthew G. Knepley 5347b0441da4SMatthew G. Knepley Level: developer 5348b0441da4SMatthew G. Knepley 534920f4b53cSBarry Smith Notes: 535020f4b53cSBarry Smith .vb 535120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 535220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 535320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 535420f4b53cSBarry Smith .ve 535520f4b53cSBarry Smith 53561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5357b0441da4SMatthew G. Knepley @*/ 5358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5359d71ae5a4SJacob Faibussowitsch { 5360b0441da4SMatthew G. Knepley PetscInt Nf; 5361b0441da4SMatthew G. Knepley 5362b0441da4SMatthew G. Knepley PetscFunctionBegin; 5363b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53649566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5365b0441da4SMatthew G. Knepley if (!Nf) { 53669566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5367b0441da4SMatthew G. Knepley } else { 53689566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5369e5e52638SMatthew G. Knepley } 53703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5371e5e52638SMatthew G. Knepley } 5372e5e52638SMatthew G. Knepley 5373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5374d71ae5a4SJacob Faibussowitsch { 5375799db056SMatthew G. Knepley DM plex; 5376799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5377799db056SMatthew G. Knepley const char **names; 5378799db056SMatthew G. Knepley char *sendNames, *recvNames; 5379799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5380799db056SMatthew G. Knepley size_t len; 5381799db056SMatthew G. Knepley MPI_Comm comm; 5382799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5383783e2ec8SMatthew G. Knepley 5384783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5385799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5386799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5387799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5388799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5389799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5390799db056SMatthew G. Knepley PetscDS dsBC; 5391799db056SMatthew G. Knepley PetscInt numBd; 5392799db056SMatthew G. Knepley 539307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5394799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5395799db056SMatthew G. Knepley maxLabels += numBd; 5396799db056SMatthew G. Knepley } 5397799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5398799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5399799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5400799db056SMatthew G. Knepley PetscDS dsBC; 5401799db056SMatthew G. Knepley PetscInt numBd, bd; 5402799db056SMatthew G. Knepley 540307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5404799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5405799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5406799db056SMatthew G. Knepley DMLabel label; 5407799db056SMatthew G. Knepley PetscInt field; 5408799db056SMatthew G. Knepley PetscObject obj; 5409799db056SMatthew G. Knepley PetscClassId id; 5410799db056SMatthew G. Knepley 5411799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 54129566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 54139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5414fa74d514SMatthew G. Knepley if (id != PETSCFE_CLASSID || !label) continue; 54159371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 54169371c9d4SSatish Balay if (labels[l] == label) break; 5417799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5418783e2ec8SMatthew G. Knepley } 5419799db056SMatthew G. Knepley } 5420799db056SMatthew G. Knepley /* Get label names */ 5421799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5422799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 54239371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 54249371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 54259371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 54269371c9d4SSatish Balay } 5427799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5428462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5429799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5430c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5431799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5432799db056SMatthew G. Knepley /* Put all names on all processes */ 5433799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5434799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5435799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5436799db056SMatthew G. Knepley gNl = displs[size]; 54379371c9d4SSatish Balay for (p = 0; p < size; ++p) { 54389371c9d4SSatish Balay counts[p] *= gmaxLen; 54399371c9d4SSatish Balay displs[p] *= gmaxLen; 54409371c9d4SSatish Balay } 5441799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5442799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5443799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5444799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5445799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5446799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5447799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54489371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54495d6b2bfcSJames Wright if (glabels[m] == glabels[gl]) goto next_label; 54509566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5451799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54529566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5453799db056SMatthew G. Knepley ++gl; 54545d6b2bfcSJames Wright next_label: 54555d6b2bfcSJames Wright continue; 5456783e2ec8SMatthew G. Knepley } 5457799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5459783e2ec8SMatthew G. Knepley } 5460783e2ec8SMatthew G. Knepley 5461d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5462d71ae5a4SJacob Faibussowitsch { 5463e5e52638SMatthew G. Knepley DMSpace *tmpd; 5464e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5465e5e52638SMatthew G. Knepley 5466e5e52638SMatthew G. Knepley PetscFunctionBegin; 54673ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5469e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54709371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54719371c9d4SSatish Balay tmpd[s].ds = NULL; 54729371c9d4SSatish Balay tmpd[s].label = NULL; 54739371c9d4SSatish Balay tmpd[s].fields = NULL; 54749371c9d4SSatish Balay } 54759566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5476e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5477e5e52638SMatthew G. Knepley dm->probs = tmpd; 54783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5479e5e52638SMatthew G. Knepley } 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley /*@ 548220f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5483e5e52638SMatthew G. Knepley 548420f4b53cSBarry Smith Not Collective 5485e5e52638SMatthew G. Knepley 5486e5e52638SMatthew G. Knepley Input Parameter: 548720f4b53cSBarry Smith . dm - The `DM` 5488e5e52638SMatthew G. Knepley 5489e5e52638SMatthew G. Knepley Output Parameter: 549020f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5491e5e52638SMatthew G. Knepley 5492e5e52638SMatthew G. Knepley Level: intermediate 5493e5e52638SMatthew G. Knepley 54941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5495e5e52638SMatthew G. Knepley @*/ 5496d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5497d71ae5a4SJacob Faibussowitsch { 5498e5e52638SMatthew G. Knepley PetscFunctionBegin; 5499e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55004f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5501e5e52638SMatthew G. Knepley *Nds = dm->Nds; 55023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5503e5e52638SMatthew G. Knepley } 5504e5e52638SMatthew G. Knepley 5505e5e52638SMatthew G. Knepley /*@ 550620f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5507e5e52638SMatthew G. Knepley 550820f4b53cSBarry Smith Logically Collective 5509e5e52638SMatthew G. Knepley 5510e5e52638SMatthew G. Knepley Input Parameter: 551120f4b53cSBarry Smith . dm - The `DM` 5512e5e52638SMatthew G. Knepley 5513e5e52638SMatthew G. Knepley Level: intermediate 5514e5e52638SMatthew G. Knepley 55151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5516e5e52638SMatthew G. Knepley @*/ 5517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5518d71ae5a4SJacob Faibussowitsch { 5519e5e52638SMatthew G. Knepley PetscInt s; 5520e5e52638SMatthew G. Knepley 5521e5e52638SMatthew G. Knepley PetscFunctionBegin; 5522e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5523e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 55249566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 552507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 55269566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 55279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5528e5e52638SMatthew G. Knepley } 55299566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5530e5e52638SMatthew G. Knepley dm->probs = NULL; 5531e5e52638SMatthew G. Knepley dm->Nds = 0; 55323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5533e5e52638SMatthew G. Knepley } 5534e5e52638SMatthew G. Knepley 5535e5e52638SMatthew G. Knepley /*@ 553620f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5537e5e52638SMatthew G. Knepley 553820f4b53cSBarry Smith Not Collective 5539e5e52638SMatthew G. Knepley 5540e5e52638SMatthew G. Knepley Input Parameter: 554120f4b53cSBarry Smith . dm - The `DM` 5542e5e52638SMatthew G. Knepley 5543e5e52638SMatthew G. Knepley Output Parameter: 554407218a29SMatthew G. Knepley . ds - The default `PetscDS` 5545e5e52638SMatthew G. Knepley 5546e5e52638SMatthew G. Knepley Level: intermediate 5547e5e52638SMatthew G. Knepley 5548ce78bad3SBarry Smith Note: 5549ce78bad3SBarry Smith The `ds` is owned by the `dm` and should not be destroyed directly. 5550ce78bad3SBarry Smith 55511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5552e5e52638SMatthew G. Knepley @*/ 555307218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5554d71ae5a4SJacob Faibussowitsch { 5555e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5556e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55574f572ea9SToby Isaac PetscAssertPointer(ds, 2); 555807218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 555907218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5561e5e52638SMatthew G. Knepley } 5562e5e52638SMatthew G. Knepley 5563e5e52638SMatthew G. Knepley /*@ 556420f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5565e5e52638SMatthew G. Knepley 556620f4b53cSBarry Smith Not Collective 5567e5e52638SMatthew G. Knepley 5568e5e52638SMatthew G. Knepley Input Parameters: 556920f4b53cSBarry Smith + dm - The `DM` 557020f4b53cSBarry Smith - point - Cell for the `PetscDS` 5571e5e52638SMatthew G. Knepley 557207218a29SMatthew G. Knepley Output Parameters: 557307218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 557407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5575e5e52638SMatthew G. Knepley 5576e5e52638SMatthew G. Knepley Level: developer 5577e5e52638SMatthew G. Knepley 55781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5579e5e52638SMatthew G. Knepley @*/ 558007218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5581d71ae5a4SJacob Faibussowitsch { 558207218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5583e5e52638SMatthew G. Knepley PetscInt s; 5584e5e52638SMatthew G. Knepley 5585e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5586e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55874f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55884f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 558963a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 559007218a29SMatthew G. Knepley if (ds) *ds = NULL; 559107218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5592e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5593e5e52638SMatthew G. Knepley PetscInt val; 5594e5e52638SMatthew G. Knepley 55959371c9d4SSatish Balay if (!dm->probs[s].label) { 559607218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55979371c9d4SSatish Balay } else { 55989566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55999371c9d4SSatish Balay if (val >= 0) { 560007218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 560107218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56029371c9d4SSatish Balay break; 56039371c9d4SSatish Balay } 5604e5e52638SMatthew G. Knepley } 5605e5e52638SMatthew G. Knepley } 560607218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 56073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5608e5e52638SMatthew G. Knepley } 5609e5e52638SMatthew G. Knepley 5610e5e52638SMatthew G. Knepley /*@ 561120f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5612e5e52638SMatthew G. Knepley 561320f4b53cSBarry Smith Not Collective 5614e5e52638SMatthew G. Knepley 5615e5e52638SMatthew G. Knepley Input Parameters: 561620f4b53cSBarry Smith + dm - The `DM` 561720f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5618e5e52638SMatthew G. Knepley 5619b3cf3223SMatthew G. Knepley Output Parameters: 562020f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 562107218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 562207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5623e5e52638SMatthew G. Knepley 5624e5e52638SMatthew G. Knepley Level: advanced 5625e5e52638SMatthew G. Knepley 562620f4b53cSBarry Smith Note: 562720f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 562820f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 562907218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 563020f4b53cSBarry Smith 56311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5632e5e52638SMatthew G. Knepley @*/ 563307218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5634d71ae5a4SJacob Faibussowitsch { 5635e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5636e5e52638SMatthew G. Knepley 5637e5e52638SMatthew G. Knepley PetscFunctionBegin; 5638e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5639e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 56409371c9d4SSatish Balay if (fields) { 56414f572ea9SToby Isaac PetscAssertPointer(fields, 3); 56429371c9d4SSatish Balay *fields = NULL; 56439371c9d4SSatish Balay } 56449371c9d4SSatish Balay if (ds) { 56454f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56469371c9d4SSatish Balay *ds = NULL; 56479371c9d4SSatish Balay } 564807218a29SMatthew G. Knepley if (dsIn) { 56494f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 565007218a29SMatthew G. Knepley *dsIn = NULL; 565107218a29SMatthew G. Knepley } 5652e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5653154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5654b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5655b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 565607218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56573ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5658b3cf3223SMatthew G. Knepley } 5659e5e52638SMatthew G. Knepley } 56603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5661e5e52638SMatthew G. Knepley } 5662e5e52638SMatthew G. Knepley 5663e5e52638SMatthew G. Knepley /*@ 5664bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5665083401c6SMatthew G. Knepley 566620f4b53cSBarry Smith Collective 5667083401c6SMatthew G. Knepley 5668083401c6SMatthew G. Knepley Input Parameters: 5669bb7acecfSBarry Smith + dm - The `DM` 567020f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 567107218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 567207218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 567307218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5674083401c6SMatthew G. Knepley 567520f4b53cSBarry Smith Level: advanced 567620f4b53cSBarry Smith 5677bb7acecfSBarry Smith Note: 5678bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5679083401c6SMatthew G. Knepley the fields argument is ignored. 5680083401c6SMatthew G. Knepley 56811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5682083401c6SMatthew G. Knepley @*/ 568307218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5684d71ae5a4SJacob Faibussowitsch { 5685083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5686083401c6SMatthew G. Knepley 5687083401c6SMatthew G. Knepley PetscFunctionBegin; 5688083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5689083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 569007218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5691064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 569207218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5693083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5694083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56959566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 569607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5697083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 569807218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5700083401c6SMatthew G. Knepley } 5701083401c6SMatthew G. Knepley } 57029566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 57039566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 570607218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5707083401c6SMatthew G. Knepley if (!label) { 5708083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5709083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5710083401c6SMatthew G. Knepley Nds = 0; 5711083401c6SMatthew G. Knepley } 5712083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5713083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5714083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 571507218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 57163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5717083401c6SMatthew G. Knepley } 5718083401c6SMatthew G. Knepley 5719083401c6SMatthew G. Knepley /*@ 572020f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5721e5e52638SMatthew G. Knepley 572220f4b53cSBarry Smith Not Collective 5723e5e52638SMatthew G. Knepley 5724e5e52638SMatthew G. Knepley Input Parameters: 572520f4b53cSBarry Smith + dm - The `DM` 5726e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5727e5e52638SMatthew G. Knepley 5728e5e52638SMatthew G. Knepley Output Parameters: 572920f4b53cSBarry Smith + label - The region label, or `NULL` 573020f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 573107218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 573207218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5733e5e52638SMatthew G. Knepley 5734e5e52638SMatthew G. Knepley Level: advanced 5735e5e52638SMatthew G. Knepley 57361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5737e5e52638SMatthew G. Knepley @*/ 573807218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5739d71ae5a4SJacob Faibussowitsch { 5740e5e52638SMatthew G. Knepley PetscInt Nds; 5741e5e52638SMatthew G. Knepley 5742e5e52638SMatthew G. Knepley PetscFunctionBegin; 5743e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57449566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 574563a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5746e5e52638SMatthew G. Knepley if (label) { 57474f572ea9SToby Isaac PetscAssertPointer(label, 3); 5748e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5749e5e52638SMatthew G. Knepley } 5750b3cf3223SMatthew G. Knepley if (fields) { 57514f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5752b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5753b3cf3223SMatthew G. Knepley } 5754e5e52638SMatthew G. Knepley if (ds) { 57554f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5756e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5757e5e52638SMatthew G. Knepley } 575807218a29SMatthew G. Knepley if (dsIn) { 57594f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 576007218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 576107218a29SMatthew G. Knepley } 57623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5763e5e52638SMatthew G. Knepley } 5764e5e52638SMatthew G. Knepley 5765e5e52638SMatthew G. Knepley /*@ 576620f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5767e5e52638SMatthew G. Knepley 576820f4b53cSBarry Smith Not Collective 5769e5e52638SMatthew G. Knepley 5770e5e52638SMatthew G. Knepley Input Parameters: 577120f4b53cSBarry Smith + dm - The `DM` 5772083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 577320f4b53cSBarry Smith . label - The region label, or `NULL` 577407218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 577507218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 577607218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5777e5e52638SMatthew G. Knepley 5778e5e52638SMatthew G. Knepley Level: advanced 5779e5e52638SMatthew G. Knepley 57801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5781e5e52638SMatthew G. Knepley @*/ 578207218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5783d71ae5a4SJacob Faibussowitsch { 5784083401c6SMatthew G. Knepley PetscInt Nds; 5785e5e52638SMatthew G. Knepley 5786e5e52638SMatthew G. Knepley PetscFunctionBegin; 5787e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5788ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57899566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 579063a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57919566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57929566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5793083401c6SMatthew G. Knepley dm->probs[num].label = label; 5794083401c6SMatthew G. Knepley if (fields) { 5795083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5798083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5799e5e52638SMatthew G. Knepley } 5800083401c6SMatthew G. Knepley if (ds) { 5801083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 58029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 58039566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5804083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5805083401c6SMatthew G. Knepley } 580607218a29SMatthew G. Knepley if (dsIn) { 580707218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 580807218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 580907218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 581007218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 581107218a29SMatthew G. Knepley } 58123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5813e5e52638SMatthew G. Knepley } 5814e5e52638SMatthew G. Knepley 5815e5e52638SMatthew G. Knepley /*@ 581620f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 58171d3af9e0SMatthew G. Knepley 581820f4b53cSBarry Smith Not Collective 58191d3af9e0SMatthew G. Knepley 58201d3af9e0SMatthew G. Knepley Input Parameters: 582120f4b53cSBarry Smith + dm - The `DM` 582220f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 58231d3af9e0SMatthew G. Knepley 58241d3af9e0SMatthew G. Knepley Output Parameter: 58251d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 58261d3af9e0SMatthew G. Knepley 58271d3af9e0SMatthew G. Knepley Level: advanced 58281d3af9e0SMatthew G. Knepley 58291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 58301d3af9e0SMatthew G. Knepley @*/ 5831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5832d71ae5a4SJacob Faibussowitsch { 58331d3af9e0SMatthew G. Knepley PetscInt Nds, n; 58341d3af9e0SMatthew G. Knepley 58351d3af9e0SMatthew G. Knepley PetscFunctionBegin; 58361d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58371d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 58384f572ea9SToby Isaac PetscAssertPointer(num, 3); 58399566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 58409371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 58419371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 58421d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 58431d3af9e0SMatthew G. Knepley else *num = n; 58443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58451d3af9e0SMatthew G. Knepley } 58461d3af9e0SMatthew G. Knepley 5847cc4c1da9SBarry Smith /*@ 5848bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58492df84da0SMatthew G. Knepley 585020f4b53cSBarry Smith Not Collective 58512df84da0SMatthew G. Knepley 5852f1a722f8SMatthew G. Knepley Input Parameters: 5853bb7acecfSBarry Smith + dm - The `DM` 58542df84da0SMatthew G. Knepley . Nc - The number of components for the field 585520f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5856bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58572df84da0SMatthew G. Knepley 58582df84da0SMatthew G. Knepley Output Parameter: 5859bb7acecfSBarry Smith . fem - The `PetscFE` 58602df84da0SMatthew G. Knepley 586120f4b53cSBarry Smith Level: intermediate 586220f4b53cSBarry Smith 5863bb7acecfSBarry Smith Note: 5864bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58652df84da0SMatthew G. Knepley 58661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58672df84da0SMatthew G. Knepley @*/ 5868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5869d71ae5a4SJacob Faibussowitsch { 58702df84da0SMatthew G. Knepley DMPolytopeType ct; 58712df84da0SMatthew G. Knepley PetscInt dim, cStart; 58722df84da0SMatthew G. Knepley 58732df84da0SMatthew G. Knepley PetscFunctionBegin; 58742df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58752df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58764f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58772df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58784f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58799566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58809566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58819566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58829566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58842df84da0SMatthew G. Knepley } 58852df84da0SMatthew G. Knepley 58861d3af9e0SMatthew G. Knepley /*@ 5887bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5888e5e52638SMatthew G. Knepley 588920f4b53cSBarry Smith Collective 5890e5e52638SMatthew G. Knepley 5891e5e52638SMatthew G. Knepley Input Parameter: 5892bb7acecfSBarry Smith . dm - The `DM` 5893e5e52638SMatthew G. Knepley 589420f4b53cSBarry Smith Options Database Key: 5895bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 589645480ffeSMatthew G. Knepley 589720f4b53cSBarry Smith Level: intermediate 589820f4b53cSBarry Smith 5899ce78bad3SBarry Smith Developer Note: 5900ce78bad3SBarry Smith The name of this function is wrong. Create functions always return the created object as one of the arguments. 5901ce78bad3SBarry Smith 59021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5903e5e52638SMatthew G. Knepley @*/ 5904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5905d71ae5a4SJacob Faibussowitsch { 5906e5e52638SMatthew G. Knepley MPI_Comm comm; 5907083401c6SMatthew G. Knepley PetscDS dsDef; 5908083401c6SMatthew G. Knepley DMLabel *labelSet; 5909f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5910f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5911e5e52638SMatthew G. Knepley 5912e5e52638SMatthew G. Knepley PetscFunctionBegin; 5913e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 59143ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 59159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 59169566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5917*4758e3ceSMatthew G. Knepley // Create nullspace constructor slots 5918*4758e3ceSMatthew G. Knepley PetscCall(PetscFree2(dm->nullspaceConstructors, dm->nearnullspaceConstructors)); 5919*4758e3ceSMatthew G. Knepley PetscCall(PetscCalloc2(Nf, &dm->nullspaceConstructors, Nf, &dm->nearnullspaceConstructors)); 5920083401c6SMatthew G. Knepley /* Determine how many regions we have */ 59219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5922083401c6SMatthew G. Knepley Nl = 0; 5923083401c6SMatthew G. Knepley Ndef = 0; 5924083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5925083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5926083401c6SMatthew G. Knepley PetscInt l; 5927083401c6SMatthew G. Knepley 5928f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5929f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5930f918ec44SMatthew G. Knepley { 5931f918ec44SMatthew G. Knepley PetscClassId id; 5932f918ec44SMatthew G. Knepley 59339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5934f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5935f918ec44SMatthew G. Knepley Ceed ceed; 5936f918ec44SMatthew G. Knepley 59379566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 59389566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5939f918ec44SMatthew G. Knepley } 5940f918ec44SMatthew G. Knepley } 5941f918ec44SMatthew G. Knepley #endif 59429371c9d4SSatish Balay if (!label) { 59439371c9d4SSatish Balay ++Ndef; 59449371c9d4SSatish Balay continue; 59459371c9d4SSatish Balay } 59469371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 59479371c9d4SSatish Balay if (label == labelSet[l]) break; 5948083401c6SMatthew G. Knepley if (l < Nl) continue; 5949083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5950083401c6SMatthew G. Knepley } 5951083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 595207218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5953083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5954b3cf3223SMatthew G. Knepley IS fields; 5955b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5956b3cf3223SMatthew G. Knepley 59579371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59589371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59597a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59619371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59629371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59639566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59659566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59669566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 596788f0c812SMatthew G. Knepley 59689566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 596907218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59709566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59722df9ee95SMatthew G. Knepley } 597307218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59749566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5975083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5976083401c6SMatthew G. Knepley if (Ndef && Nl) { 59770122748bSMatthew G. Knepley DM plex; 5978083401c6SMatthew G. Knepley DMLabel cellLabel; 5979083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5980083401c6SMatthew G. Knepley PetscInt *fields; 5981083401c6SMatthew G. Knepley const PetscInt *cells; 5982083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59830122748bSMatthew G. Knepley 59849566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59859566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59869566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59879566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59885fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5989083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5990083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5991083401c6SMatthew G. Knepley IS pointIS; 5992083401c6SMatthew G. Knepley 59939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59949566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59959566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5997083401c6SMatthew G. Knepley } 59989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5999083401c6SMatthew G. Knepley 60009566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 60019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 60029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 60039566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 60049566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 60059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 60069566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 6007083401c6SMatthew G. Knepley 60089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 60099371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 60109371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 60119566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 60129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 60139566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 60149566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 6015083401c6SMatthew G. Knepley 60169566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 601707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 60189566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 60199566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 60209566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 60219566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 60229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 6023083401c6SMatthew G. Knepley } 6024083401c6SMatthew G. Knepley /* Create label DSes 6025083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 6026083401c6SMatthew G. Knepley */ 6027083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 6028083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 6029083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 603007218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 6031083401c6SMatthew G. Knepley IS fields; 6032083401c6SMatthew G. Knepley PetscInt *fld, nf; 6033083401c6SMatthew G. Knepley 60349566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 60359371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60369371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 60379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 60389371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 60399371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 60409566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 60419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 60429566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 60439566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 60449566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 6045083401c6SMatthew G. Knepley { 6046083401c6SMatthew G. Knepley DMPolytopeType ct; 6047083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 60485fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 60490122748bSMatthew G. Knepley 60509566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 6051665f567fSMatthew G. Knepley if (lStart >= 0) { 60529566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6053412e9a14SMatthew G. Knepley switch (ct) { 6054412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6055412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6056412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6057d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6058d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6059d71ae5a4SJacob Faibussowitsch break; 6060d71ae5a4SJacob Faibussowitsch default: 6061d71ae5a4SJacob Faibussowitsch break; 6062412e9a14SMatthew G. Knepley } 6063665f567fSMatthew G. Knepley } 6064462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 606507218a29SMatthew G. Knepley if (isCohesive) { 606607218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 606707218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 606807218a29SMatthew G. Knepley } 60695fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60705fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60715fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60729566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60739566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 607407218a29SMatthew G. Knepley if (dsIn) { 607507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 607607218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 607707218a29SMatthew G. Knepley } 60785fedec97SMatthew G. Knepley } 60795fedec97SMatthew G. Knepley ++nf; 60805fedec97SMatthew G. Knepley } 60815fedec97SMatthew G. Knepley } 6082e5e52638SMatthew G. Knepley } 608307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 608407218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60859566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 608607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6087e5e52638SMatthew G. Knepley } 60889566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6089e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6090083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6091083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 609207218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6093083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6094083401c6SMatthew G. Knepley const PetscInt *fld; 60955fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60965fedec97SMatthew G. Knepley PetscBool isCohesive; 6097e5e52638SMatthew G. Knepley 60989566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60999566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 61009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 61019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6102083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6103083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 61045fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6105e5e52638SMatthew G. Knepley PetscClassId id; 6106e5e52638SMatthew G. Knepley 61075fedec97SMatthew G. Knepley /* Handle DS with no fields */ 61089566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 61095fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 611007218a29SMatthew G. Knepley if (isCohesive) { 611107218a29SMatthew G. Knepley if (!isCohesiveField) { 611207218a29SMatthew G. Knepley PetscObject bdDisc; 611307218a29SMatthew G. Knepley 611407218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 611507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 611607218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 611707218a29SMatthew G. Knepley } else { 61189566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 611907218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 612007218a29SMatthew G. Knepley } 612107218a29SMatthew G. Knepley } else { 612207218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 612307218a29SMatthew G. Knepley } 6124083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 61259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6126e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6127e5e52638SMatthew G. Knepley } 61289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6129e5e52638SMatthew G. Knepley } 6130f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 61319566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6132f9244615SMatthew G. Knepley if (flg) { 61333b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 61343b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 613507218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 61363b4aee56SMatthew G. Knepley PetscInt Nf, f; 61373b4aee56SMatthew G. Knepley 61389566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 613907218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 614007218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 614107218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 614207218a29SMatthew G. Knepley } 61433b4aee56SMatthew G. Knepley } 6144f9244615SMatthew G. Knepley } 6145e5e52638SMatthew G. Knepley /* Setup DSes */ 6146e5e52638SMatthew G. Knepley if (doSetup) { 614707218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6148cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6149cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6150cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6151cf1363e4SMatthew G. Knepley } 615207218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 615307218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 615407218a29SMatthew G. Knepley } 6155e5e52638SMatthew G. Knepley } 61563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6157e5e52638SMatthew G. Knepley } 6158e5e52638SMatthew G. Knepley 6159e5e52638SMatthew G. Knepley /*@ 6160d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6161d2b2dc1eSMatthew G. Knepley 6162d2b2dc1eSMatthew G. Knepley Input Parameters: 6163d2b2dc1eSMatthew G. Knepley + dm - The DM 6164d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6165d2b2dc1eSMatthew G. Knepley 6166d2b2dc1eSMatthew G. Knepley Level: developer 6167d2b2dc1eSMatthew G. Knepley 6168d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6169d2b2dc1eSMatthew G. Knepley @*/ 6170d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6171d2b2dc1eSMatthew G. Knepley { 6172d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6173d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6174d2b2dc1eSMatthew G. Knepley 6175d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6176d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6177d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6178d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6179d2b2dc1eSMatthew G. Knepley PetscObject obj; 6180d2b2dc1eSMatthew G. Knepley PetscClassId id; 6181d2b2dc1eSMatthew G. Knepley 6182d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6183d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6184d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6185d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6186d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6187d2b2dc1eSMatthew G. Knepley 6188d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6189d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6190d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6191d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6192d2b2dc1eSMatthew G. Knepley } 6193d2b2dc1eSMatthew G. Knepley if (tensor) { 6194d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6195d2b2dc1eSMatthew G. Knepley } else { 6196d2b2dc1eSMatthew G. Knepley PetscSection s; 6197d2b2dc1eSMatthew G. Knepley 6198d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6199d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6200d2b2dc1eSMatthew G. Knepley } 6201d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6202d2b2dc1eSMatthew G. Knepley } 6203d2b2dc1eSMatthew G. Knepley 6204d2b2dc1eSMatthew G. Knepley /*@ 6205bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 62067f96f943SMatthew G. Knepley 620720f4b53cSBarry Smith Collective 6208f2cacb80SMatthew G. Knepley 62097f96f943SMatthew G. Knepley Input Parameters: 6210bb7acecfSBarry Smith + dm - The `DM` 62117f96f943SMatthew G. Knepley - time - The time 62127f96f943SMatthew G. Knepley 62137f96f943SMatthew G. Knepley Output Parameters: 621420f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 621520f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 621620f4b53cSBarry Smith 621720f4b53cSBarry Smith Level: developer 62187f96f943SMatthew G. Knepley 6219bb7acecfSBarry Smith Note: 6220bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 62217f96f943SMatthew G. Knepley 62221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 62237f96f943SMatthew G. Knepley @*/ 6224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6225d71ae5a4SJacob Faibussowitsch { 62267f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 62277f96f943SMatthew G. Knepley void **ectxs; 6228f60fa741SMatthew G. Knepley Vec locu, locu_t; 62297f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 62307f96f943SMatthew G. Knepley 62317f96f943SMatthew G. Knepley PetscFunctionBegin; 6232f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6233f60fa741SMatthew G. Knepley if (u) { 6234f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6235f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6236f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6237f60fa741SMatthew G. Knepley } 6238f60fa741SMatthew G. Knepley if (u_t) { 6239f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6240f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6241f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6242f60fa741SMatthew G. Knepley } 62439566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 62449566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 62459566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62467f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 62477f96f943SMatthew G. Knepley PetscDS ds; 62487f96f943SMatthew G. Knepley DMLabel label; 62497f96f943SMatthew G. Knepley IS fieldIS; 62507f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 62517f96f943SMatthew G. Knepley PetscInt dsNf, f; 62527f96f943SMatthew G. Knepley 625307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62549566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62569566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62579566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6258f2cacb80SMatthew G. Knepley if (u) { 6259f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6260f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6261f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62627f96f943SMatthew G. Knepley } 6263f2cacb80SMatthew G. Knepley if (u_t) { 62649566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62659566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6266f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6267f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6268f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6269f2cacb80SMatthew G. Knepley } 62709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6271f2cacb80SMatthew G. Knepley } 6272f2cacb80SMatthew G. Knepley if (u) { 62739566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6275f2cacb80SMatthew G. Knepley } 6276f2cacb80SMatthew G. Knepley if (u_t) { 62779566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62789566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6279f2cacb80SMatthew G. Knepley } 62809566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6281f60fa741SMatthew G. Knepley if (u) { 6282f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6283f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6284f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6285f60fa741SMatthew G. Knepley } 6286f60fa741SMatthew G. Knepley if (u_t) { 6287f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6288f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6289f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6290f60fa741SMatthew G. Knepley } 62913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62927f96f943SMatthew G. Knepley } 62937f96f943SMatthew G. Knepley 6294bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn) 6295d71ae5a4SJacob Faibussowitsch { 629607218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 629745480ffeSMatthew G. Knepley 629845480ffeSMatthew G. Knepley PetscFunctionBegin; 62999566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 6300bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew)); 630107218a29SMatthew G. Knepley if (dsIn) { 630207218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 6303bb4b53efSMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew)); 630445480ffeSMatthew G. Knepley } 630507218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 63069566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 630707218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 63083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 630945480ffeSMatthew G. Knepley } 631045480ffeSMatthew G. Knepley 63117f96f943SMatthew G. Knepley /*@ 6312bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6313e5e52638SMatthew G. Knepley 631420f4b53cSBarry Smith Collective 6315e5e52638SMatthew G. Knepley 6316bb4b53efSMatthew G. Knepley Input Parameters: 6317bb4b53efSMatthew G. Knepley + dm - The `DM` 6318bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit 6319bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit 6320e5e52638SMatthew G. Knepley 6321e5e52638SMatthew G. Knepley Output Parameter: 6322bb7acecfSBarry Smith . newdm - The `DM` 6323e5e52638SMatthew G. Knepley 6324e5e52638SMatthew G. Knepley Level: advanced 6325e5e52638SMatthew G. Knepley 63261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6327e5e52638SMatthew G. Knepley @*/ 6328bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm) 6329d71ae5a4SJacob Faibussowitsch { 6330e5e52638SMatthew G. Knepley PetscInt Nds, s; 6331e5e52638SMatthew G. Knepley 6332e5e52638SMatthew G. Knepley PetscFunctionBegin; 63333ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 63349566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 63359566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6336e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6337e5e52638SMatthew G. Knepley DMLabel label; 6338b3cf3223SMatthew G. Knepley IS fields; 633907218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6340783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6341e5e52638SMatthew G. Knepley 634207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6343b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 6344bb4b53efSMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn)); 6345d5b43468SJose E. Roman /* Complete new labels in the new DS */ 634607218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 63479566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6348783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6349b8025e53SMatthew G. Knepley PetscWeakForm wf; 635045480ffeSMatthew G. Knepley DMLabel label; 6351783e2ec8SMatthew G. Knepley PetscInt field; 6352783e2ec8SMatthew G. Knepley 63539566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63549566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6355783e2ec8SMatthew G. Knepley } 6356e5e52638SMatthew G. Knepley } 6357799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6359e5e52638SMatthew G. Knepley } 6360e5e52638SMatthew G. Knepley 6361e5e52638SMatthew G. Knepley /*@ 6362bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6363e5e52638SMatthew G. Knepley 636420f4b53cSBarry Smith Collective 6365e5e52638SMatthew G. Knepley 6366e5e52638SMatthew G. Knepley Input Parameter: 6367bb7acecfSBarry Smith . dm - The `DM` 6368e5e52638SMatthew G. Knepley 6369e5e52638SMatthew G. Knepley Output Parameter: 6370bb7acecfSBarry Smith . newdm - The `DM` 6371e5e52638SMatthew G. Knepley 6372e5e52638SMatthew G. Knepley Level: advanced 6373e5e52638SMatthew G. Knepley 637473ff1848SBarry Smith Developer Note: 6375bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6376bb7acecfSBarry Smith 63771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6378e5e52638SMatthew G. Knepley @*/ 6379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6380d71ae5a4SJacob Faibussowitsch { 6381e5e52638SMatthew G. Knepley PetscFunctionBegin; 6382bb4b53efSMatthew G. Knepley PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 6383bb4b53efSMatthew G. Knepley PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm)); 63843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6385e5e52638SMatthew G. Knepley } 6386e5e52638SMatthew G. Knepley 6387c73cfb54SMatthew G. Knepley /*@ 6388bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6389c73cfb54SMatthew G. Knepley 639020f4b53cSBarry Smith Not Collective 6391c73cfb54SMatthew G. Knepley 6392c73cfb54SMatthew G. Knepley Input Parameter: 6393bb7acecfSBarry Smith . dm - The `DM` 6394c73cfb54SMatthew G. Knepley 6395c73cfb54SMatthew G. Knepley Output Parameter: 6396c73cfb54SMatthew G. Knepley . dim - The topological dimension 6397c73cfb54SMatthew G. Knepley 6398c73cfb54SMatthew G. Knepley Level: beginner 6399c73cfb54SMatthew G. Knepley 64001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6401c73cfb54SMatthew G. Knepley @*/ 6402d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6403d71ae5a4SJacob Faibussowitsch { 6404c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6405c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64064f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6407c73cfb54SMatthew G. Knepley *dim = dm->dim; 64083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6409c73cfb54SMatthew G. Knepley } 6410c73cfb54SMatthew G. Knepley 6411c73cfb54SMatthew G. Knepley /*@ 6412bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6413c73cfb54SMatthew G. Knepley 641420f4b53cSBarry Smith Collective 6415c73cfb54SMatthew G. Knepley 6416c73cfb54SMatthew G. Knepley Input Parameters: 6417bb7acecfSBarry Smith + dm - The `DM` 6418c73cfb54SMatthew G. Knepley - dim - The topological dimension 6419c73cfb54SMatthew G. Knepley 6420c73cfb54SMatthew G. Knepley Level: beginner 6421c73cfb54SMatthew G. Knepley 64221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6423c73cfb54SMatthew G. Knepley @*/ 6424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6425d71ae5a4SJacob Faibussowitsch { 6426e5e52638SMatthew G. Knepley PetscDS ds; 642745480ffeSMatthew G. Knepley PetscInt Nds, n; 6428f17e8794SMatthew G. Knepley 6429c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6430c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6431c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6432c73cfb54SMatthew G. Knepley dm->dim = dim; 6433d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 64349566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 643545480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 643607218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 64379566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 643845480ffeSMatthew G. Knepley } 6439d17bd122SMatthew G. Knepley } 64403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6441c73cfb54SMatthew G. Knepley } 6442c73cfb54SMatthew G. Knepley 6443793f3fe5SMatthew G. Knepley /*@ 6444793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6445793f3fe5SMatthew G. Knepley 644620f4b53cSBarry Smith Collective 6447793f3fe5SMatthew G. Knepley 6448793f3fe5SMatthew G. Knepley Input Parameters: 6449bb7acecfSBarry Smith + dm - the `DM` 6450793f3fe5SMatthew G. Knepley - dim - the dimension 6451793f3fe5SMatthew G. Knepley 6452793f3fe5SMatthew G. Knepley Output Parameters: 6453793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6454aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6455793f3fe5SMatthew G. Knepley 645620f4b53cSBarry Smith Level: intermediate 645720f4b53cSBarry Smith 6458793f3fe5SMatthew G. Knepley Note: 6459793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6460a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6461793f3fe5SMatthew G. Knepley then the interval is empty. 6462793f3fe5SMatthew G. Knepley 64631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6464793f3fe5SMatthew G. Knepley @*/ 6465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6466d71ae5a4SJacob Faibussowitsch { 6467793f3fe5SMatthew G. Knepley PetscInt d; 6468793f3fe5SMatthew G. Knepley 6469793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6470793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64719566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64727a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6473dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6475793f3fe5SMatthew G. Knepley } 6476793f3fe5SMatthew G. Knepley 64776636e97aSMatthew G Knepley /*@ 6478bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6479f4d763aaSMatthew G. Knepley 648020f4b53cSBarry Smith Collective 64818f700142SStefano Zampini 6482f4d763aaSMatthew G. Knepley Input Parameter: 6483bb7acecfSBarry Smith . dm - The original `DM` 6484f4d763aaSMatthew G. Knepley 6485f4d763aaSMatthew G. Knepley Output Parameter: 6486bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6487f4d763aaSMatthew G. Knepley 6488f4d763aaSMatthew G. Knepley Level: intermediate 6489f4d763aaSMatthew G. Knepley 6490bb7acecfSBarry Smith Note: 6491bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6492bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6493bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6494bb7acecfSBarry Smith 64951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6496f4d763aaSMatthew G. Knepley @*/ 6497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6498d71ae5a4SJacob Faibussowitsch { 6499c26acbdeSMatthew G. Knepley PetscSection section; 6500eb9d3e4dSMatthew G. Knepley IS perm; 6501eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 650292a26154SJames Wright PetscInt num_face_sfs = 0; 650314f150ffSMatthew G. Knepley 650414f150ffSMatthew G. Knepley PetscFunctionBegin; 650514f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65064f572ea9SToby Isaac PetscAssertPointer(odm, 2); 65079566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 65089566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6509eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 651092a26154SJames Wright PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL)); 651192a26154SJames Wright newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE; 6512462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6513eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6514c26acbdeSMatthew G. Knepley *odm = dm; 65153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6516c26acbdeSMatthew G. Knepley } 651714f150ffSMatthew G. Knepley if (!dm->dmBC) { 6518c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 651992a26154SJames Wright PetscSF sf, sfNatural; 6520eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 652114f150ffSMatthew G. Knepley 65229566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 65239566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 65249566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 65259566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 65269566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 652792a26154SJames Wright PetscCall(DMGetNaturalSF(dm, &sfNatural)); 652892a26154SJames Wright PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural)); 65299566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6530eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 65319566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 65329566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 653314f150ffSMatthew G. Knepley } 653414f150ffSMatthew G. Knepley *odm = dm->dmBC; 65353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 653614f150ffSMatthew G. Knepley } 6537f4d763aaSMatthew G. Knepley 6538f4d763aaSMatthew G. Knepley /*@ 6539cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6540f4d763aaSMatthew G. Knepley 6541f4d763aaSMatthew G. Knepley Input Parameter: 6542bb7acecfSBarry Smith . dm - The original `DM` 6543f4d763aaSMatthew G. Knepley 6544cdb7a50dSMatthew G. Knepley Output Parameters: 6545cdb7a50dSMatthew G. Knepley + num - The output sequence number 6546cdb7a50dSMatthew G. Knepley - val - The output sequence value 6547f4d763aaSMatthew G. Knepley 6548f4d763aaSMatthew G. Knepley Level: intermediate 6549f4d763aaSMatthew G. Knepley 6550bb7acecfSBarry Smith Note: 6551bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6552bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6553bb7acecfSBarry Smith 655473ff1848SBarry Smith Developer Note: 6555bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6556bb7acecfSBarry Smith not directly related to the `DM`. 6557f4d763aaSMatthew G. Knepley 65581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6559f4d763aaSMatthew G. Knepley @*/ 6560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6561d71ae5a4SJacob Faibussowitsch { 6562f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6563f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65649371c9d4SSatish Balay if (num) { 65654f572ea9SToby Isaac PetscAssertPointer(num, 2); 65669371c9d4SSatish Balay *num = dm->outputSequenceNum; 65679371c9d4SSatish Balay } 65689371c9d4SSatish Balay if (val) { 65694f572ea9SToby Isaac PetscAssertPointer(val, 3); 65709371c9d4SSatish Balay *val = dm->outputSequenceVal; 65719371c9d4SSatish Balay } 65723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6573f4d763aaSMatthew G. Knepley } 6574f4d763aaSMatthew G. Knepley 6575f4d763aaSMatthew G. Knepley /*@ 6576cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6577f4d763aaSMatthew G. Knepley 6578f4d763aaSMatthew G. Knepley Input Parameters: 6579bb7acecfSBarry Smith + dm - The original `DM` 6580cdb7a50dSMatthew G. Knepley . num - The output sequence number 6581cdb7a50dSMatthew G. Knepley - val - The output sequence value 6582f4d763aaSMatthew G. Knepley 6583f4d763aaSMatthew G. Knepley Level: intermediate 6584f4d763aaSMatthew G. Knepley 6585bb7acecfSBarry Smith Note: 6586bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6587bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6588f4d763aaSMatthew G. Knepley 65891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6590f4d763aaSMatthew G. Knepley @*/ 6591d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6592d71ae5a4SJacob Faibussowitsch { 6593f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6594f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6595f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6596cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6598cdb7a50dSMatthew G. Knepley } 6599cdb7a50dSMatthew G. Knepley 66005d83a8b1SBarry Smith /*@ 6601bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6602cdb7a50dSMatthew G. Knepley 6603cdb7a50dSMatthew G. Knepley Input Parameters: 6604bb7acecfSBarry Smith + dm - The original `DM` 6605b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6606cdb7a50dSMatthew G. Knepley . name - The sequence name 6607cdb7a50dSMatthew G. Knepley - num - The output sequence number 6608cdb7a50dSMatthew G. Knepley 6609cdb7a50dSMatthew G. Knepley Output Parameter: 6610cdb7a50dSMatthew G. Knepley . val - The output sequence value 6611cdb7a50dSMatthew G. Knepley 6612cdb7a50dSMatthew G. Knepley Level: intermediate 6613cdb7a50dSMatthew G. Knepley 6614bb7acecfSBarry Smith Note: 6615bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6616bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6617bb7acecfSBarry Smith 661873ff1848SBarry Smith Developer Note: 6619bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6620cdb7a50dSMatthew G. Knepley 66211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6622cdb7a50dSMatthew G. Knepley @*/ 6623b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val) 6624d71ae5a4SJacob Faibussowitsch { 6625cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6626cdb7a50dSMatthew G. Knepley 6627cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6628cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6629cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6630b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 66314f572ea9SToby Isaac PetscAssertPointer(val, 5); 66329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6633cdb7a50dSMatthew G. Knepley if (ishdf5) { 6634cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6635cdb7a50dSMatthew G. Knepley PetscScalar value; 6636cdb7a50dSMatthew G. Knepley 66379566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 66384aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6639cdb7a50dSMatthew G. Knepley #endif 6640cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 66413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6642f4d763aaSMatthew G. Knepley } 66438e4ac7eaSMatthew G. Knepley 66448e4ac7eaSMatthew G. Knepley /*@ 6645b2033f5dSMatthew G. Knepley DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer` 6646b2033f5dSMatthew G. Knepley 6647b2033f5dSMatthew G. Knepley Input Parameters: 6648b2033f5dSMatthew G. Knepley + dm - The original `DM` 6649b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from 6650b2033f5dSMatthew G. Knepley - name - The sequence name 6651b2033f5dSMatthew G. Knepley 6652b2033f5dSMatthew G. Knepley Output Parameter: 6653b2033f5dSMatthew G. Knepley . len - The length of the output sequence 6654b2033f5dSMatthew G. Knepley 6655b2033f5dSMatthew G. Knepley Level: intermediate 6656b2033f5dSMatthew G. Knepley 6657b2033f5dSMatthew G. Knepley Note: 6658b2033f5dSMatthew G. Knepley This is intended for output that should appear in sequence, for instance 6659b2033f5dSMatthew G. Knepley a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6660b2033f5dSMatthew G. Knepley 6661b2033f5dSMatthew G. Knepley Developer Note: 6662b2033f5dSMatthew G. Knepley It is unclear at the user API level why a `DM` is needed as input 6663b2033f5dSMatthew G. Knepley 6664b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6665b2033f5dSMatthew G. Knepley @*/ 6666b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len) 6667b2033f5dSMatthew G. Knepley { 6668b2033f5dSMatthew G. Knepley PetscBool ishdf5; 6669b2033f5dSMatthew G. Knepley 6670b2033f5dSMatthew G. Knepley PetscFunctionBegin; 6671b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6672b2033f5dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 6673b2033f5dSMatthew G. Knepley PetscAssertPointer(name, 3); 6674b2033f5dSMatthew G. Knepley PetscAssertPointer(len, 4); 6675b2033f5dSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6676b2033f5dSMatthew G. Knepley if (ishdf5) { 6677b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6678b2033f5dSMatthew G. Knepley PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer)); 6679b2033f5dSMatthew G. Knepley #endif 6680b2033f5dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6681b2033f5dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6682b2033f5dSMatthew G. Knepley } 6683b2033f5dSMatthew G. Knepley 6684b2033f5dSMatthew G. Knepley /*@ 6685bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66868e4ac7eaSMatthew G. Knepley 668720f4b53cSBarry Smith Not Collective 66888e4ac7eaSMatthew G. Knepley 66898e4ac7eaSMatthew G. Knepley Input Parameter: 6690bb7acecfSBarry Smith . dm - The `DM` 66918e4ac7eaSMatthew G. Knepley 66928e4ac7eaSMatthew G. Knepley Output Parameter: 6693bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66948e4ac7eaSMatthew G. Knepley 66958e4ac7eaSMatthew G. Knepley Level: beginner 66968e4ac7eaSMatthew G. Knepley 66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 66988e4ac7eaSMatthew G. Knepley @*/ 6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6700d71ae5a4SJacob Faibussowitsch { 67018e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67028e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67034f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 67048e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 67053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67068e4ac7eaSMatthew G. Knepley } 67078e4ac7eaSMatthew G. Knepley 67088e4ac7eaSMatthew G. Knepley /*@ 6709bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 67108e4ac7eaSMatthew G. Knepley 671120f4b53cSBarry Smith Collective 67128e4ac7eaSMatthew G. Knepley 67138e4ac7eaSMatthew G. Knepley Input Parameters: 6714bb7acecfSBarry Smith + dm - The `DM` 6715bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 67168e4ac7eaSMatthew G. Knepley 671773ff1848SBarry Smith Level: beginner 671873ff1848SBarry Smith 6719bb7acecfSBarry Smith Note: 6720bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 67215d3b26e6SMatthew G. Knepley 67221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 67238e4ac7eaSMatthew G. Knepley @*/ 6724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6725d71ae5a4SJacob Faibussowitsch { 67268e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 67278e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67288833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 67298e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 67303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67318e4ac7eaSMatthew G. Knepley } 6732c58f1c22SToby Isaac 6733cc4c1da9SBarry Smith /*@ 6734bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6735c58f1c22SToby Isaac 6736c58f1c22SToby Isaac Not Collective 6737c58f1c22SToby Isaac 6738c58f1c22SToby Isaac Input Parameters: 6739bb7acecfSBarry Smith + dm - The `DM` object 6740c58f1c22SToby Isaac - name - The label name 6741c58f1c22SToby Isaac 6742c58f1c22SToby Isaac Level: intermediate 6743c58f1c22SToby Isaac 67441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6745c58f1c22SToby Isaac @*/ 6746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6747d71ae5a4SJacob Faibussowitsch { 67485d80c0bfSVaclav Hapla PetscBool flg; 67495d80c0bfSVaclav Hapla DMLabel label; 6750c58f1c22SToby Isaac 6751c58f1c22SToby Isaac PetscFunctionBegin; 6752c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67534f572ea9SToby Isaac PetscAssertPointer(name, 2); 67549566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6755c58f1c22SToby Isaac if (!flg) { 67569566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67579566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67589566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6759c58f1c22SToby Isaac } 67603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6761c58f1c22SToby Isaac } 6762c58f1c22SToby Isaac 6763cc4c1da9SBarry Smith /*@ 6764bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 67650fdc7489SMatthew Knepley 67660fdc7489SMatthew Knepley Not Collective 67670fdc7489SMatthew Knepley 67680fdc7489SMatthew Knepley Input Parameters: 6769bb7acecfSBarry Smith + dm - The `DM` object 67700fdc7489SMatthew Knepley . l - The index for the label 67710fdc7489SMatthew Knepley - name - The label name 67720fdc7489SMatthew Knepley 67730fdc7489SMatthew Knepley Level: intermediate 67740fdc7489SMatthew Knepley 67751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 67760fdc7489SMatthew Knepley @*/ 6777d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6778d71ae5a4SJacob Faibussowitsch { 67790fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 67800fdc7489SMatthew Knepley DMLabel label; 67810fdc7489SMatthew Knepley PetscInt Nl, m; 67820fdc7489SMatthew Knepley PetscBool flg, match; 67830fdc7489SMatthew Knepley const char *lname; 67840fdc7489SMatthew Knepley 67850fdc7489SMatthew Knepley PetscFunctionBegin; 67860fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67874f572ea9SToby Isaac PetscAssertPointer(name, 3); 67889566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 67890fdc7489SMatthew Knepley if (!flg) { 67909566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 67919566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 67929566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 67930fdc7489SMatthew Knepley } 67949566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 679563a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 67960fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 67979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 67989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67990fdc7489SMatthew Knepley if (match) break; 68000fdc7489SMatthew Knepley } 68013ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 68020fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 68030fdc7489SMatthew Knepley else prev->next = orig->next; 68040fdc7489SMatthew Knepley if (!l) { 68050fdc7489SMatthew Knepley orig->next = dm->labels; 68060fdc7489SMatthew Knepley dm->labels = orig; 68070fdc7489SMatthew Knepley } else { 6808fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 68090fdc7489SMatthew Knepley orig->next = prev->next; 68100fdc7489SMatthew Knepley prev->next = orig; 68110fdc7489SMatthew Knepley } 68123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 68130fdc7489SMatthew Knepley } 68140fdc7489SMatthew Knepley 6815cc4c1da9SBarry Smith /*@ 6816bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6817c58f1c22SToby Isaac 6818c58f1c22SToby Isaac Not Collective 6819c58f1c22SToby Isaac 6820c58f1c22SToby Isaac Input Parameters: 6821bb7acecfSBarry Smith + dm - The `DM` object 6822c58f1c22SToby Isaac . name - The label name 6823c58f1c22SToby Isaac - point - The mesh point 6824c58f1c22SToby Isaac 6825c58f1c22SToby Isaac Output Parameter: 6826c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6827c58f1c22SToby Isaac 6828c58f1c22SToby Isaac Level: beginner 6829c58f1c22SToby Isaac 68301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6831c58f1c22SToby Isaac @*/ 6832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6833d71ae5a4SJacob Faibussowitsch { 6834c58f1c22SToby Isaac DMLabel label; 6835c58f1c22SToby Isaac 6836c58f1c22SToby Isaac PetscFunctionBegin; 6837c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68384f572ea9SToby Isaac PetscAssertPointer(name, 2); 68399566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68407a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 68419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 68423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6843c58f1c22SToby Isaac } 6844c58f1c22SToby Isaac 6845cc4c1da9SBarry Smith /*@ 6846bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6847c58f1c22SToby Isaac 6848c58f1c22SToby Isaac Not Collective 6849c58f1c22SToby Isaac 6850c58f1c22SToby Isaac Input Parameters: 6851bb7acecfSBarry Smith + dm - The `DM` object 6852c58f1c22SToby Isaac . name - The label name 6853c58f1c22SToby Isaac . point - The mesh point 6854c58f1c22SToby Isaac - value - The label value for this point 6855c58f1c22SToby Isaac 6856c58f1c22SToby Isaac Output Parameter: 6857c58f1c22SToby Isaac 6858c58f1c22SToby Isaac Level: beginner 6859c58f1c22SToby Isaac 68601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6861c58f1c22SToby Isaac @*/ 6862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6863d71ae5a4SJacob Faibussowitsch { 6864c58f1c22SToby Isaac DMLabel label; 6865c58f1c22SToby Isaac 6866c58f1c22SToby Isaac PetscFunctionBegin; 6867c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68684f572ea9SToby Isaac PetscAssertPointer(name, 2); 68699566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6870c58f1c22SToby Isaac if (!label) { 68719566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 68729566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6873c58f1c22SToby Isaac } 68749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 68753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6876c58f1c22SToby Isaac } 6877c58f1c22SToby Isaac 6878cc4c1da9SBarry Smith /*@ 6879bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6880c58f1c22SToby Isaac 6881c58f1c22SToby Isaac Not Collective 6882c58f1c22SToby Isaac 6883c58f1c22SToby Isaac Input Parameters: 6884bb7acecfSBarry Smith + dm - The `DM` object 6885c58f1c22SToby Isaac . name - The label name 6886c58f1c22SToby Isaac . point - The mesh point 6887c58f1c22SToby Isaac - value - The label value for this point 6888c58f1c22SToby Isaac 6889c58f1c22SToby Isaac Level: beginner 6890c58f1c22SToby Isaac 68911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6892c58f1c22SToby Isaac @*/ 6893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6894d71ae5a4SJacob Faibussowitsch { 6895c58f1c22SToby Isaac DMLabel label; 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac PetscFunctionBegin; 6898c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68994f572ea9SToby Isaac PetscAssertPointer(name, 2); 69009566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69013ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69029566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 69033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6904c58f1c22SToby Isaac } 6905c58f1c22SToby Isaac 6906cc4c1da9SBarry Smith /*@ 6907bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6908c58f1c22SToby Isaac 6909c58f1c22SToby Isaac Not Collective 6910c58f1c22SToby Isaac 6911c58f1c22SToby Isaac Input Parameters: 6912bb7acecfSBarry Smith + dm - The `DM` object 6913c58f1c22SToby Isaac - name - The label name 6914c58f1c22SToby Isaac 6915c58f1c22SToby Isaac Output Parameter: 6916c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6917c58f1c22SToby Isaac 6918c58f1c22SToby Isaac Level: beginner 6919c58f1c22SToby Isaac 692073ff1848SBarry Smith Developer Note: 6921bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6922bb7acecfSBarry Smith 69231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6924c58f1c22SToby Isaac @*/ 6925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6926d71ae5a4SJacob Faibussowitsch { 6927c58f1c22SToby Isaac DMLabel label; 6928c58f1c22SToby Isaac 6929c58f1c22SToby Isaac PetscFunctionBegin; 6930c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69314f572ea9SToby Isaac PetscAssertPointer(name, 2); 69324f572ea9SToby Isaac PetscAssertPointer(size, 3); 69339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6934c58f1c22SToby Isaac *size = 0; 69353ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69369566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 69373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6938c58f1c22SToby Isaac } 6939c58f1c22SToby Isaac 6940cc4c1da9SBarry Smith /*@ 6941bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6942c58f1c22SToby Isaac 6943c58f1c22SToby Isaac Not Collective 6944c58f1c22SToby Isaac 6945c58f1c22SToby Isaac Input Parameters: 694660225df5SJacob Faibussowitsch + dm - The `DM` object 6947c58f1c22SToby Isaac - name - The label name 6948c58f1c22SToby Isaac 6949c58f1c22SToby Isaac Output Parameter: 695020f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6951c58f1c22SToby Isaac 6952c58f1c22SToby Isaac Level: beginner 6953c58f1c22SToby Isaac 69541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6955c58f1c22SToby Isaac @*/ 6956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6957d71ae5a4SJacob Faibussowitsch { 6958c58f1c22SToby Isaac DMLabel label; 6959c58f1c22SToby Isaac 6960c58f1c22SToby Isaac PetscFunctionBegin; 6961c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69624f572ea9SToby Isaac PetscAssertPointer(name, 2); 69634f572ea9SToby Isaac PetscAssertPointer(ids, 3); 69649566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6965c58f1c22SToby Isaac *ids = NULL; 6966dab2e251SBlaise Bourdin if (label) { 69679566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6968dab2e251SBlaise Bourdin } else { 6969dab2e251SBlaise Bourdin /* returning an empty IS */ 69709566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6971dab2e251SBlaise Bourdin } 69723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6973c58f1c22SToby Isaac } 6974c58f1c22SToby Isaac 6975cc4c1da9SBarry Smith /*@ 6976c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6977c58f1c22SToby Isaac 6978c58f1c22SToby Isaac Not Collective 6979c58f1c22SToby Isaac 6980c58f1c22SToby Isaac Input Parameters: 6981bb7acecfSBarry Smith + dm - The `DM` object 6982b6971eaeSBarry Smith . name - The label name of the stratum 6983c58f1c22SToby Isaac - value - The stratum value 6984c58f1c22SToby Isaac 6985c58f1c22SToby Isaac Output Parameter: 6986bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6987c58f1c22SToby Isaac 6988c58f1c22SToby Isaac Level: beginner 6989c58f1c22SToby Isaac 69901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6991c58f1c22SToby Isaac @*/ 6992d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6993d71ae5a4SJacob Faibussowitsch { 6994c58f1c22SToby Isaac DMLabel label; 6995c58f1c22SToby Isaac 6996c58f1c22SToby Isaac PetscFunctionBegin; 6997c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69984f572ea9SToby Isaac PetscAssertPointer(name, 2); 69994f572ea9SToby Isaac PetscAssertPointer(size, 4); 70009566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7001c58f1c22SToby Isaac *size = 0; 70023ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70039566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 70043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7005c58f1c22SToby Isaac } 7006c58f1c22SToby Isaac 7007cc4c1da9SBarry Smith /*@ 7008c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 7009c58f1c22SToby Isaac 7010c58f1c22SToby Isaac Not Collective 7011c58f1c22SToby Isaac 7012c58f1c22SToby Isaac Input Parameters: 7013bb7acecfSBarry Smith + dm - The `DM` object 7014c58f1c22SToby Isaac . name - The label name 7015c58f1c22SToby Isaac - value - The stratum value 7016c58f1c22SToby Isaac 7017c58f1c22SToby Isaac Output Parameter: 701820f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 7019c58f1c22SToby Isaac 7020c58f1c22SToby Isaac Level: beginner 7021c58f1c22SToby Isaac 70221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 7023c58f1c22SToby Isaac @*/ 7024d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 7025d71ae5a4SJacob Faibussowitsch { 7026c58f1c22SToby Isaac DMLabel label; 7027c58f1c22SToby Isaac 7028c58f1c22SToby Isaac PetscFunctionBegin; 7029c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70304f572ea9SToby Isaac PetscAssertPointer(name, 2); 70314f572ea9SToby Isaac PetscAssertPointer(points, 4); 70329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 7033c58f1c22SToby Isaac *points = NULL; 70343ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70359566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 70363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7037c58f1c22SToby Isaac } 7038c58f1c22SToby Isaac 7039cc4c1da9SBarry Smith /*@ 70409044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 70414de306b1SToby Isaac 70424de306b1SToby Isaac Not Collective 70434de306b1SToby Isaac 70444de306b1SToby Isaac Input Parameters: 7045bb7acecfSBarry Smith + dm - The `DM` object 70464de306b1SToby Isaac . name - The label name 70474de306b1SToby Isaac . value - The stratum value 70484de306b1SToby Isaac - points - The stratum points 70494de306b1SToby Isaac 70504de306b1SToby Isaac Level: beginner 70514de306b1SToby Isaac 70521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 70534de306b1SToby Isaac @*/ 7054d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 7055d71ae5a4SJacob Faibussowitsch { 70564de306b1SToby Isaac DMLabel label; 70574de306b1SToby Isaac 70584de306b1SToby Isaac PetscFunctionBegin; 70594de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70604f572ea9SToby Isaac PetscAssertPointer(name, 2); 7061292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 70629566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70633ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70649566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 70653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70664de306b1SToby Isaac } 70674de306b1SToby Isaac 7068cc4c1da9SBarry Smith /*@ 7069bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 7070c58f1c22SToby Isaac 7071c58f1c22SToby Isaac Not Collective 7072c58f1c22SToby Isaac 7073c58f1c22SToby Isaac Input Parameters: 7074bb7acecfSBarry Smith + dm - The `DM` object 7075c58f1c22SToby Isaac . name - The label name 7076c58f1c22SToby Isaac - value - The label value for this point 7077c58f1c22SToby Isaac 7078c58f1c22SToby Isaac Output Parameter: 7079c58f1c22SToby Isaac 7080c58f1c22SToby Isaac Level: beginner 7081c58f1c22SToby Isaac 70821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 7083c58f1c22SToby Isaac @*/ 7084d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 7085d71ae5a4SJacob Faibussowitsch { 7086c58f1c22SToby Isaac DMLabel label; 7087c58f1c22SToby Isaac 7088c58f1c22SToby Isaac PetscFunctionBegin; 7089c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70904f572ea9SToby Isaac PetscAssertPointer(name, 2); 70919566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 70923ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 70939566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 70943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7095c58f1c22SToby Isaac } 7096c58f1c22SToby Isaac 7097c58f1c22SToby Isaac /*@ 7098bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7099c58f1c22SToby Isaac 7100c58f1c22SToby Isaac Not Collective 7101c58f1c22SToby Isaac 7102c58f1c22SToby Isaac Input Parameter: 7103bb7acecfSBarry Smith . dm - The `DM` object 7104c58f1c22SToby Isaac 7105c58f1c22SToby Isaac Output Parameter: 7106c58f1c22SToby Isaac . numLabels - the number of Labels 7107c58f1c22SToby Isaac 7108c58f1c22SToby Isaac Level: intermediate 7109c58f1c22SToby Isaac 71101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7111c58f1c22SToby Isaac @*/ 7112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7113d71ae5a4SJacob Faibussowitsch { 71145d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7115c58f1c22SToby Isaac PetscInt n = 0; 7116c58f1c22SToby Isaac 7117c58f1c22SToby Isaac PetscFunctionBegin; 7118c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71194f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 71209371c9d4SSatish Balay while (next) { 71219371c9d4SSatish Balay ++n; 71229371c9d4SSatish Balay next = next->next; 71239371c9d4SSatish Balay } 7124c58f1c22SToby Isaac *numLabels = n; 71253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7126c58f1c22SToby Isaac } 7127c58f1c22SToby Isaac 7128cc4c1da9SBarry Smith /*@ 7129c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7130c58f1c22SToby Isaac 7131c58f1c22SToby Isaac Not Collective 7132c58f1c22SToby Isaac 7133c58f1c22SToby Isaac Input Parameters: 7134bb7acecfSBarry Smith + dm - The `DM` object 7135c58f1c22SToby Isaac - n - the label number 7136c58f1c22SToby Isaac 7137c58f1c22SToby Isaac Output Parameter: 7138c58f1c22SToby Isaac . name - the label name 7139c58f1c22SToby Isaac 7140c58f1c22SToby Isaac Level: intermediate 7141c58f1c22SToby Isaac 714273ff1848SBarry Smith Developer Note: 7143bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7144bb7acecfSBarry Smith 71451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7146c58f1c22SToby Isaac @*/ 7147cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[]) 7148d71ae5a4SJacob Faibussowitsch { 71495d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7150c58f1c22SToby Isaac PetscInt l = 0; 7151c58f1c22SToby Isaac 7152c58f1c22SToby Isaac PetscFunctionBegin; 7153c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71544f572ea9SToby Isaac PetscAssertPointer(name, 3); 7155c58f1c22SToby Isaac while (next) { 7156c58f1c22SToby Isaac if (l == n) { 71579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 71583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7159c58f1c22SToby Isaac } 7160c58f1c22SToby Isaac ++l; 7161c58f1c22SToby Isaac next = next->next; 7162c58f1c22SToby Isaac } 716363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7164c58f1c22SToby Isaac } 7165c58f1c22SToby Isaac 7166cc4c1da9SBarry Smith /*@ 7167bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7168c58f1c22SToby Isaac 7169c58f1c22SToby Isaac Not Collective 7170c58f1c22SToby Isaac 7171c58f1c22SToby Isaac Input Parameters: 7172bb7acecfSBarry Smith + dm - The `DM` object 7173c58f1c22SToby Isaac - name - The label name 7174c58f1c22SToby Isaac 7175c58f1c22SToby Isaac Output Parameter: 7176bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7177c58f1c22SToby Isaac 7178c58f1c22SToby Isaac Level: intermediate 7179c58f1c22SToby Isaac 71801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7181c58f1c22SToby Isaac @*/ 7182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7183d71ae5a4SJacob Faibussowitsch { 71845d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7185d67d17b1SMatthew G. Knepley const char *lname; 7186c58f1c22SToby Isaac 7187c58f1c22SToby Isaac PetscFunctionBegin; 7188c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71894f572ea9SToby Isaac PetscAssertPointer(name, 2); 71904f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7191c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7192c58f1c22SToby Isaac while (next) { 71939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71949566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7195c58f1c22SToby Isaac if (*hasLabel) break; 7196c58f1c22SToby Isaac next = next->next; 7197c58f1c22SToby Isaac } 71983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7199c58f1c22SToby Isaac } 7200c58f1c22SToby Isaac 7201a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7202cc4c1da9SBarry Smith /*@ 720320f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7204c58f1c22SToby Isaac 7205c58f1c22SToby Isaac Not Collective 7206c58f1c22SToby Isaac 7207c58f1c22SToby Isaac Input Parameters: 7208bb7acecfSBarry Smith + dm - The `DM` object 7209c58f1c22SToby Isaac - name - The label name 7210c58f1c22SToby Isaac 7211c58f1c22SToby Isaac Output Parameter: 721220f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7213c58f1c22SToby Isaac 7214bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7215bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7216bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7217bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7218bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7219bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7220bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72216d7c9049SMatthew G. Knepley 7222c58f1c22SToby Isaac Level: intermediate 7223c58f1c22SToby Isaac 722460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7225c58f1c22SToby Isaac @*/ 7226d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7227d71ae5a4SJacob Faibussowitsch { 72285d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7229c58f1c22SToby Isaac PetscBool hasLabel; 7230d67d17b1SMatthew G. Knepley const char *lname; 7231c58f1c22SToby Isaac 7232c58f1c22SToby Isaac PetscFunctionBegin; 7233c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72344f572ea9SToby Isaac PetscAssertPointer(name, 2); 72354f572ea9SToby Isaac PetscAssertPointer(label, 3); 7236c58f1c22SToby Isaac *label = NULL; 7237c58f1c22SToby Isaac while (next) { 72389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7240c58f1c22SToby Isaac if (hasLabel) { 7241c58f1c22SToby Isaac *label = next->label; 7242c58f1c22SToby Isaac break; 7243c58f1c22SToby Isaac } 7244c58f1c22SToby Isaac next = next->next; 7245c58f1c22SToby Isaac } 72463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7247c58f1c22SToby Isaac } 7248c58f1c22SToby Isaac 7249cc4c1da9SBarry Smith /*@ 7250bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7251c58f1c22SToby Isaac 7252c58f1c22SToby Isaac Not Collective 7253c58f1c22SToby Isaac 7254c58f1c22SToby Isaac Input Parameters: 7255bb7acecfSBarry Smith + dm - The `DM` object 7256c58f1c22SToby Isaac - n - the label number 7257c58f1c22SToby Isaac 7258c58f1c22SToby Isaac Output Parameter: 7259c58f1c22SToby Isaac . label - the label 7260c58f1c22SToby Isaac 7261c58f1c22SToby Isaac Level: intermediate 7262c58f1c22SToby Isaac 72631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7264c58f1c22SToby Isaac @*/ 7265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7266d71ae5a4SJacob Faibussowitsch { 72675d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7268c58f1c22SToby Isaac PetscInt l = 0; 7269c58f1c22SToby Isaac 7270c58f1c22SToby Isaac PetscFunctionBegin; 7271c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72724f572ea9SToby Isaac PetscAssertPointer(label, 3); 7273c58f1c22SToby Isaac while (next) { 7274c58f1c22SToby Isaac if (l == n) { 7275c58f1c22SToby Isaac *label = next->label; 72763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7277c58f1c22SToby Isaac } 7278c58f1c22SToby Isaac ++l; 7279c58f1c22SToby Isaac next = next->next; 7280c58f1c22SToby Isaac } 728163a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7282c58f1c22SToby Isaac } 7283c58f1c22SToby Isaac 7284cc4c1da9SBarry Smith /*@ 7285bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7286c58f1c22SToby Isaac 7287c58f1c22SToby Isaac Not Collective 7288c58f1c22SToby Isaac 7289c58f1c22SToby Isaac Input Parameters: 7290bb7acecfSBarry Smith + dm - The `DM` object 7291bb7acecfSBarry Smith - label - The `DMLabel` 7292c58f1c22SToby Isaac 7293c58f1c22SToby Isaac Level: developer 7294c58f1c22SToby Isaac 729560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7296c58f1c22SToby Isaac @*/ 7297d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7298d71ae5a4SJacob Faibussowitsch { 72995d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7300c58f1c22SToby Isaac PetscBool hasLabel; 7301d67d17b1SMatthew G. Knepley const char *lname; 73025d80c0bfSVaclav Hapla PetscBool flg; 7303c58f1c22SToby Isaac 7304c58f1c22SToby Isaac PetscFunctionBegin; 7305c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 73079566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 73087a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 73099566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7310c58f1c22SToby Isaac tmpLabel->label = label; 7311c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 73125d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 73135d80c0bfSVaclav Hapla *p = tmpLabel; 73149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73159566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73165d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 73179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7318ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7320c58f1c22SToby Isaac } 7321c58f1c22SToby Isaac 7322a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7323cc4c1da9SBarry Smith /*@ 73244a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 73254a7ee7d0SMatthew G. Knepley 73264a7ee7d0SMatthew G. Knepley Not Collective 73274a7ee7d0SMatthew G. Knepley 73284a7ee7d0SMatthew G. Knepley Input Parameters: 7329bb7acecfSBarry Smith + dm - The `DM` object 7330bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 73314a7ee7d0SMatthew G. Knepley 7332bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7333bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7334bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7335bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7336bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7337bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7338bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 73394a7ee7d0SMatthew G. Knepley 73404a7ee7d0SMatthew G. Knepley Level: intermediate 73414a7ee7d0SMatthew G. Knepley 73421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 73434a7ee7d0SMatthew G. Knepley @*/ 7344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7345d71ae5a4SJacob Faibussowitsch { 73464a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 73474a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 73484a7ee7d0SMatthew G. Knepley const char *name, *lname; 73494a7ee7d0SMatthew G. Knepley 73504a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 73514a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73524a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 73539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 73544a7ee7d0SMatthew G. Knepley while (next) { 73559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73569566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 73574a7ee7d0SMatthew G. Knepley if (hasLabel) { 73589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 73599566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 73604a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 73619566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 73624a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 73639566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 73644a7ee7d0SMatthew G. Knepley next->label = label; 73654a7ee7d0SMatthew G. Knepley break; 73664a7ee7d0SMatthew G. Knepley } 73674a7ee7d0SMatthew G. Knepley next = next->next; 73684a7ee7d0SMatthew G. Knepley } 73693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73704a7ee7d0SMatthew G. Knepley } 73714a7ee7d0SMatthew G. Knepley 7372cc4c1da9SBarry Smith /*@ 7373bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7374c58f1c22SToby Isaac 7375c58f1c22SToby Isaac Not Collective 7376c58f1c22SToby Isaac 7377c58f1c22SToby Isaac Input Parameters: 7378bb7acecfSBarry Smith + dm - The `DM` object 7379c58f1c22SToby Isaac - name - The label name 7380c58f1c22SToby Isaac 7381c58f1c22SToby Isaac Output Parameter: 738220f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7383bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7384c58f1c22SToby Isaac 7385c58f1c22SToby Isaac Level: developer 7386c58f1c22SToby Isaac 73871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7388c58f1c22SToby Isaac @*/ 7389d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7390d71ae5a4SJacob Faibussowitsch { 739195d578d6SVaclav Hapla DMLabelLink link, *pnext; 7392c58f1c22SToby Isaac PetscBool hasLabel; 7393d67d17b1SMatthew G. Knepley const char *lname; 7394c58f1c22SToby Isaac 7395c58f1c22SToby Isaac PetscFunctionBegin; 7396c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73974f572ea9SToby Isaac PetscAssertPointer(name, 2); 7398e5472504SVaclav Hapla if (label) { 73994f572ea9SToby Isaac PetscAssertPointer(label, 3); 7400c58f1c22SToby Isaac *label = NULL; 7401e5472504SVaclav Hapla } 74025d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 74039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 74049566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7405c58f1c22SToby Isaac if (hasLabel) { 740695d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 74079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 740895d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 74099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7410ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 741195d578d6SVaclav Hapla if (label) *label = link->label; 74129566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 74139566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7414c58f1c22SToby Isaac break; 7415c58f1c22SToby Isaac } 7416c58f1c22SToby Isaac } 74173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7418c58f1c22SToby Isaac } 7419c58f1c22SToby Isaac 7420306894acSVaclav Hapla /*@ 7421bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7422306894acSVaclav Hapla 7423306894acSVaclav Hapla Not Collective 7424306894acSVaclav Hapla 7425306894acSVaclav Hapla Input Parameters: 7426bb7acecfSBarry Smith + dm - The `DM` object 7427bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 742820f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7429306894acSVaclav Hapla 7430306894acSVaclav Hapla Level: developer 7431306894acSVaclav Hapla 7432bb7acecfSBarry Smith Note: 7433306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7434bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7435306894acSVaclav Hapla *label nullified. 7436306894acSVaclav Hapla 74371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7438306894acSVaclav Hapla @*/ 7439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7440d71ae5a4SJacob Faibussowitsch { 744143e45a93SVaclav Hapla DMLabelLink link, *pnext; 7442306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7443306894acSVaclav Hapla 7444306894acSVaclav Hapla PetscFunctionBegin; 7445306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74464f572ea9SToby Isaac PetscAssertPointer(label, 2); 74473ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7448306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7449306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 74505d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 745143e45a93SVaclav Hapla if (*label == link->label) { 7452306894acSVaclav Hapla hasLabel = PETSC_TRUE; 745343e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7454306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7455ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 745643e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 74579566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 74589566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7459306894acSVaclav Hapla break; 7460306894acSVaclav Hapla } 7461306894acSVaclav Hapla } 74627a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 74633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7464306894acSVaclav Hapla } 7465306894acSVaclav Hapla 7466cc4c1da9SBarry Smith /*@ 7467c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7468c58f1c22SToby Isaac 7469c58f1c22SToby Isaac Not Collective 7470c58f1c22SToby Isaac 7471c58f1c22SToby Isaac Input Parameters: 7472bb7acecfSBarry Smith + dm - The `DM` object 7473c58f1c22SToby Isaac - name - The label name 7474c58f1c22SToby Isaac 7475c58f1c22SToby Isaac Output Parameter: 7476c58f1c22SToby Isaac . output - The flag for output 7477c58f1c22SToby Isaac 7478c58f1c22SToby Isaac Level: developer 7479c58f1c22SToby Isaac 74801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7481c58f1c22SToby Isaac @*/ 7482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7483d71ae5a4SJacob Faibussowitsch { 74845d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7485d67d17b1SMatthew G. Knepley const char *lname; 7486c58f1c22SToby Isaac 7487c58f1c22SToby Isaac PetscFunctionBegin; 7488c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74894f572ea9SToby Isaac PetscAssertPointer(name, 2); 74904f572ea9SToby Isaac PetscAssertPointer(output, 3); 7491c58f1c22SToby Isaac while (next) { 7492c58f1c22SToby Isaac PetscBool flg; 7493c58f1c22SToby Isaac 74949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74969371c9d4SSatish Balay if (flg) { 74979371c9d4SSatish Balay *output = next->output; 74983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74999371c9d4SSatish Balay } 7500c58f1c22SToby Isaac next = next->next; 7501c58f1c22SToby Isaac } 750298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7503c58f1c22SToby Isaac } 7504c58f1c22SToby Isaac 7505cc4c1da9SBarry Smith /*@ 7506bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7507c58f1c22SToby Isaac 7508c58f1c22SToby Isaac Not Collective 7509c58f1c22SToby Isaac 7510c58f1c22SToby Isaac Input Parameters: 7511bb7acecfSBarry Smith + dm - The `DM` object 7512c58f1c22SToby Isaac . name - The label name 7513bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7514c58f1c22SToby Isaac 7515c58f1c22SToby Isaac Level: developer 7516c58f1c22SToby Isaac 75171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7518c58f1c22SToby Isaac @*/ 7519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7520d71ae5a4SJacob Faibussowitsch { 75215d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7522d67d17b1SMatthew G. Knepley const char *lname; 7523c58f1c22SToby Isaac 7524c58f1c22SToby Isaac PetscFunctionBegin; 7525c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 75264f572ea9SToby Isaac PetscAssertPointer(name, 2); 7527c58f1c22SToby Isaac while (next) { 7528c58f1c22SToby Isaac PetscBool flg; 7529c58f1c22SToby Isaac 75309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 75319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 75329371c9d4SSatish Balay if (flg) { 75339371c9d4SSatish Balay next->output = output; 75343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75359371c9d4SSatish Balay } 7536c58f1c22SToby Isaac next = next->next; 7537c58f1c22SToby Isaac } 753898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7539c58f1c22SToby Isaac } 7540c58f1c22SToby Isaac 7541c58f1c22SToby Isaac /*@ 7542bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7543c58f1c22SToby Isaac 754420f4b53cSBarry Smith Collective 7545c58f1c22SToby Isaac 7546d8d19677SJose E. Roman Input Parameters: 7547bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7548bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7549bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7550bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7551bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7552c58f1c22SToby Isaac 7553c58f1c22SToby Isaac Level: intermediate 7554c58f1c22SToby Isaac 7555bb7acecfSBarry Smith Note: 75562cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7557c58f1c22SToby Isaac 75581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7559c58f1c22SToby Isaac @*/ 7560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7561d71ae5a4SJacob Faibussowitsch { 75622cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7563c58f1c22SToby Isaac const char *name; 7564c58f1c22SToby Isaac PetscBool flg; 75655d80c0bfSVaclav Hapla DMLabelLink link; 7566c58f1c22SToby Isaac 75675d80c0bfSVaclav Hapla PetscFunctionBegin; 75685d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 75695d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 75705d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 75715d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 75727a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 75733ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 75745d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 75755d80c0bfSVaclav Hapla label = link->label; 75769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 75775d80c0bfSVaclav Hapla if (!all) { 75789566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7579c58f1c22SToby Isaac if (flg) continue; 75809566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 75817d5acc75SStefano Zampini if (flg) continue; 75829566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7583ba2698f1SMatthew G. Knepley if (flg) continue; 75845d80c0bfSVaclav Hapla } 75859566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 75862cbb9b06SVaclav Hapla if (labelOld) { 75872cbb9b06SVaclav Hapla switch (emode) { 7588d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7589d71ae5a4SJacob Faibussowitsch continue; 7590d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7591d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7592d71ae5a4SJacob Faibussowitsch break; 7593d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7594d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7595d71ae5a4SJacob Faibussowitsch default: 7596d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 75972cbb9b06SVaclav Hapla } 75982cbb9b06SVaclav Hapla } 75995d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 76009566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 76015d80c0bfSVaclav Hapla } else { 76025d80c0bfSVaclav Hapla labelNew = label; 76035d80c0bfSVaclav Hapla } 76049566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 76059566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7606c58f1c22SToby Isaac } 76073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7608c58f1c22SToby Isaac } 7609461a15a0SLisandro Dalcin 7610609dae6eSVaclav Hapla /*@C 7611b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7612609dae6eSVaclav Hapla 761320f4b53cSBarry Smith Collective; No Fortran Support 7614609dae6eSVaclav Hapla 7615609dae6eSVaclav Hapla Input Parameters: 7616bb7acecfSBarry Smith + dm0 - First `DM` object 7617bb7acecfSBarry Smith - dm1 - Second `DM` object 7618609dae6eSVaclav Hapla 7619a4e35b19SJacob Faibussowitsch Output Parameters: 7620ce78bad3SBarry Smith + equal - (Optional) Flag whether labels of `dm0` and `dm1` are the same 762120f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7622609dae6eSVaclav Hapla 7623609dae6eSVaclav Hapla Level: intermediate 7624609dae6eSVaclav Hapla 7625609dae6eSVaclav Hapla Notes: 7626bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7627bb7acecfSBarry Smith 762820f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7629bb7acecfSBarry Smith 763020f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7631609dae6eSVaclav Hapla 76325efe38ccSVaclav Hapla The output message is set independently on each rank. 7633bb7acecfSBarry Smith 7634bb7acecfSBarry Smith message must be freed with `PetscFree()` 7635bb7acecfSBarry Smith 7636ce78bad3SBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to `stderr` in synchronized manner. 7637bb7acecfSBarry Smith 763820f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7639609dae6eSVaclav Hapla 7640609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7641bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7642609dae6eSVaclav Hapla 7643cc4c1da9SBarry Smith Developer Note: 7644ce78bad3SBarry Smith Cannot automatically generate the Fortran stub because `message` must be freed with `PetscFree()` 7645cc4c1da9SBarry Smith 76461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7647609dae6eSVaclav Hapla @*/ 7648ce78bad3SBarry Smith PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char *message[]) PeNS 7649d71ae5a4SJacob Faibussowitsch { 76505efe38ccSVaclav Hapla PetscInt n, i; 7651609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 76525efe38ccSVaclav Hapla PetscBool eq; 7653609dae6eSVaclav Hapla MPI_Comm comm; 76545efe38ccSVaclav Hapla PetscMPIInt rank; 7655609dae6eSVaclav Hapla 7656609dae6eSVaclav Hapla PetscFunctionBegin; 7657609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7658609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7659609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 76604f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 76614f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 76629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 76639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 76645efe38ccSVaclav Hapla { 76655efe38ccSVaclav Hapla PetscInt n1; 76665efe38ccSVaclav Hapla 76679566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 76689566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 76695efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 767048a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7671462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 76725efe38ccSVaclav Hapla if (!eq) goto finish; 76735efe38ccSVaclav Hapla } 76745efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7675609dae6eSVaclav Hapla DMLabel l0, l1; 7676609dae6eSVaclav Hapla const char *name; 7677609dae6eSVaclav Hapla char *msgInner; 7678609dae6eSVaclav Hapla 7679609dae6eSVaclav Hapla /* Ignore label order */ 76809566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 76819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 76829566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7683609dae6eSVaclav Hapla if (!l1) { 768463a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 76855efe38ccSVaclav Hapla eq = PETSC_FALSE; 76865efe38ccSVaclav Hapla break; 7687609dae6eSVaclav Hapla } 76889566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 76899566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 76909566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 76915efe38ccSVaclav Hapla if (!eq) break; 7692609dae6eSVaclav Hapla } 7693462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7694609dae6eSVaclav Hapla finish: 76955efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7696609dae6eSVaclav Hapla if (message) { 7697609dae6eSVaclav Hapla *message = NULL; 769848a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 76995efe38ccSVaclav Hapla } else { 770048a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 77019566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 77025efe38ccSVaclav Hapla } 77035efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 77045efe38ccSVaclav Hapla if (equal) *equal = eq; 77057a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 77063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7707609dae6eSVaclav Hapla } 7708609dae6eSVaclav Hapla 7709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7710d71ae5a4SJacob Faibussowitsch { 7711461a15a0SLisandro Dalcin PetscFunctionBegin; 77124f572ea9SToby Isaac PetscAssertPointer(label, 2); 7713461a15a0SLisandro Dalcin if (!*label) { 77149566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 77159566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7716461a15a0SLisandro Dalcin } 77179566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 77183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7719461a15a0SLisandro Dalcin } 7720461a15a0SLisandro Dalcin 77210fdc7489SMatthew Knepley /* 77220fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 77230fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 77240fdc7489SMatthew Knepley (label, id) pair in the DM. 77250fdc7489SMatthew Knepley 77260fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 77270fdc7489SMatthew Knepley each label. 77280fdc7489SMatthew Knepley */ 7729d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7730d71ae5a4SJacob Faibussowitsch { 77310fdc7489SMatthew Knepley DMUniversalLabel ul; 77320fdc7489SMatthew Knepley PetscBool *active; 77330fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 77340fdc7489SMatthew Knepley 77350fdc7489SMatthew Knepley PetscFunctionBegin; 77369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 77379566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 77389566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 77399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 77400fdc7489SMatthew Knepley ul->Nl = 0; 77410fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77420fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 77430fdc7489SMatthew Knepley const char *name; 77440fdc7489SMatthew Knepley 77459566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77469566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 77479566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 77480fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 77490fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 77500fdc7489SMatthew Knepley } 77519566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 77520fdc7489SMatthew Knepley ul->Nv = 0; 77530fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77540fdc7489SMatthew Knepley DMLabel label; 77550fdc7489SMatthew Knepley PetscInt nv; 77560fdc7489SMatthew Knepley const char *name; 77570fdc7489SMatthew Knepley 77580fdc7489SMatthew Knepley if (!active[l]) continue; 77599566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 77609566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77619566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77629566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 77630fdc7489SMatthew Knepley ul->indices[m] = l; 77640fdc7489SMatthew Knepley ul->Nv += nv; 77650fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 77660fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 77670fdc7489SMatthew Knepley ++m; 77680fdc7489SMatthew Knepley } 77690fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 77700fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 77710fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 77720fdc7489SMatthew Knepley } 77730fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77740fdc7489SMatthew Knepley PetscInt b; 77750fdc7489SMatthew Knepley 77760fdc7489SMatthew Knepley ul->masks[l] = 0; 77770fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 77780fdc7489SMatthew Knepley } 77799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 77800fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77810fdc7489SMatthew Knepley DMLabel label; 77820fdc7489SMatthew Knepley IS valueIS; 77830fdc7489SMatthew Knepley const PetscInt *varr; 77840fdc7489SMatthew Knepley PetscInt nv, v; 77850fdc7489SMatthew Knepley 77860fdc7489SMatthew Knepley if (!active[l]) continue; 77879566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77889566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 77899566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 77909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7791ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 77929566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 77939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 77949566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 77950fdc7489SMatthew Knepley ++m; 77960fdc7489SMatthew Knepley } 77979566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 77980fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 77990fdc7489SMatthew Knepley PetscInt uval = 0; 78000fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 78010fdc7489SMatthew Knepley 78020fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 78030fdc7489SMatthew Knepley DMLabel label; 78040649b39aSStefano Zampini PetscInt val, defval, loc, nv; 78050fdc7489SMatthew Knepley 78060fdc7489SMatthew Knepley if (!active[l]) continue; 78079566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 78089566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 78099566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 78109371c9d4SSatish Balay if (val == defval) { 78119371c9d4SSatish Balay ++m; 78129371c9d4SSatish Balay continue; 78139371c9d4SSatish Balay } 78140649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 78150fdc7489SMatthew Knepley marked = PETSC_TRUE; 78169566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 781763a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 78180fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 78190fdc7489SMatthew Knepley ++m; 78200fdc7489SMatthew Knepley } 78219566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 78220fdc7489SMatthew Knepley } 78239566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 78240fdc7489SMatthew Knepley *universal = ul; 78253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78260fdc7489SMatthew Knepley } 78270fdc7489SMatthew Knepley 7828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7829d71ae5a4SJacob Faibussowitsch { 78300fdc7489SMatthew Knepley PetscInt l; 78310fdc7489SMatthew Knepley 78320fdc7489SMatthew Knepley PetscFunctionBegin; 78339566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 78349566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 78359566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 78369566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 78379566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 78380fdc7489SMatthew Knepley *universal = NULL; 78393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78400fdc7489SMatthew Knepley } 78410fdc7489SMatthew Knepley 7842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7843d71ae5a4SJacob Faibussowitsch { 78440fdc7489SMatthew Knepley PetscFunctionBegin; 78454f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 78460fdc7489SMatthew Knepley *ulabel = ul->label; 78473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78480fdc7489SMatthew Knepley } 78490fdc7489SMatthew Knepley 7850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7851d71ae5a4SJacob Faibussowitsch { 78520fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 78530fdc7489SMatthew Knepley 78540fdc7489SMatthew Knepley PetscFunctionBegin; 7855064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 78560fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 78579566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 78589566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 78590fdc7489SMatthew Knepley } 78600fdc7489SMatthew Knepley if (preserveOrder) { 78610fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78620fdc7489SMatthew Knepley const char *name; 78630fdc7489SMatthew Knepley PetscBool match; 78640fdc7489SMatthew Knepley 78659566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 78669566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 786763a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 78680fdc7489SMatthew Knepley } 78690fdc7489SMatthew Knepley } 78703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78710fdc7489SMatthew Knepley } 78720fdc7489SMatthew Knepley 7873d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7874d71ae5a4SJacob Faibussowitsch { 78750fdc7489SMatthew Knepley PetscInt l; 78760fdc7489SMatthew Knepley 78770fdc7489SMatthew Knepley PetscFunctionBegin; 78780fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 78790fdc7489SMatthew Knepley DMLabel label; 78800fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 78810fdc7489SMatthew Knepley 78820fdc7489SMatthew Knepley if (lval) { 78839566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 78849566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 78859566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 78860fdc7489SMatthew Knepley } 78870fdc7489SMatthew Knepley } 78883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 78890fdc7489SMatthew Knepley } 7890a8fb8f29SToby Isaac 7891a8fb8f29SToby Isaac /*@ 7892bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7893bb7acecfSBarry Smith 789420f4b53cSBarry Smith Not Collective 7895a8fb8f29SToby Isaac 7896a8fb8f29SToby Isaac Input Parameter: 7897bb7acecfSBarry Smith . dm - The `DM` object 7898a8fb8f29SToby Isaac 7899a8fb8f29SToby Isaac Output Parameter: 7900bb7acecfSBarry Smith . cdm - The coarse `DM` 7901a8fb8f29SToby Isaac 7902a8fb8f29SToby Isaac Level: intermediate 7903a8fb8f29SToby Isaac 79041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7905a8fb8f29SToby Isaac @*/ 7906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7907d71ae5a4SJacob Faibussowitsch { 7908a8fb8f29SToby Isaac PetscFunctionBegin; 7909a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79104f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7911a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 79123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7913a8fb8f29SToby Isaac } 7914a8fb8f29SToby Isaac 7915a8fb8f29SToby Isaac /*@ 7916bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7917a8fb8f29SToby Isaac 7918a8fb8f29SToby Isaac Input Parameters: 7919bb7acecfSBarry Smith + dm - The `DM` object 7920bb7acecfSBarry Smith - cdm - The coarse `DM` 7921a8fb8f29SToby Isaac 7922a8fb8f29SToby Isaac Level: intermediate 7923a8fb8f29SToby Isaac 7924bb7acecfSBarry Smith Note: 7925bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7926bb7acecfSBarry Smith 79271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7928a8fb8f29SToby Isaac @*/ 7929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7930d71ae5a4SJacob Faibussowitsch { 7931a8fb8f29SToby Isaac PetscFunctionBegin; 7932a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7933a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 793489d734beSBarry Smith if (dm == cdm) cdm = NULL; 79359566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 79369566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7937a8fb8f29SToby Isaac dm->coarseMesh = cdm; 79383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7939a8fb8f29SToby Isaac } 7940a8fb8f29SToby Isaac 794188bdff64SToby Isaac /*@ 7942bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 794388bdff64SToby Isaac 794488bdff64SToby Isaac Input Parameter: 7945bb7acecfSBarry Smith . dm - The `DM` object 794688bdff64SToby Isaac 794788bdff64SToby Isaac Output Parameter: 7948bb7acecfSBarry Smith . fdm - The fine `DM` 794988bdff64SToby Isaac 795088bdff64SToby Isaac Level: intermediate 795188bdff64SToby Isaac 79521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 795388bdff64SToby Isaac @*/ 7954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7955d71ae5a4SJacob Faibussowitsch { 795688bdff64SToby Isaac PetscFunctionBegin; 795788bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 79584f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 795988bdff64SToby Isaac *fdm = dm->fineMesh; 79603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 796188bdff64SToby Isaac } 796288bdff64SToby Isaac 796388bdff64SToby Isaac /*@ 7964bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 796588bdff64SToby Isaac 796688bdff64SToby Isaac Input Parameters: 7967bb7acecfSBarry Smith + dm - The `DM` object 7968bb7acecfSBarry Smith - fdm - The fine `DM` 796988bdff64SToby Isaac 7970bb7acecfSBarry Smith Level: developer 797188bdff64SToby Isaac 7972bb7acecfSBarry Smith Note: 7973bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7974bb7acecfSBarry Smith 79751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 797688bdff64SToby Isaac @*/ 7977d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7978d71ae5a4SJacob Faibussowitsch { 797988bdff64SToby Isaac PetscFunctionBegin; 798088bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 798188bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 798289d734beSBarry Smith if (dm == fdm) fdm = NULL; 79839566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 79849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 798588bdff64SToby Isaac dm->fineMesh = fdm; 79863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 798788bdff64SToby Isaac } 798888bdff64SToby Isaac 7989a6ba4734SToby Isaac /*@C 7990bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7991a6ba4734SToby Isaac 799220f4b53cSBarry Smith Collective 7993783e2ec8SMatthew G. Knepley 7994a6ba4734SToby Isaac Input Parameters: 7995bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7996bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7997a6ba4734SToby Isaac . name - The BC name 799845480ffeSMatthew G. Knepley . label - The label defining constrained points 7999bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 800045480ffeSMatthew G. Knepley . values - An array of values for constrained points 8001a6ba4734SToby Isaac . field - The field to constrain 8002258f4e96SStefano Zampini . Nc - The number of constrained field components (0 will constrain all components) 8003a6ba4734SToby Isaac . comps - An array of constrained component numbers 8004a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 800556cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 8006a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 8007a6ba4734SToby Isaac 800845480ffeSMatthew G. Knepley Output Parameter: 800945480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 801045480ffeSMatthew G. Knepley 8011a6ba4734SToby Isaac Options Database Keys: 8012a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 8013a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 8014a6ba4734SToby Isaac 801520f4b53cSBarry Smith Level: intermediate 801620f4b53cSBarry Smith 8017bb7acecfSBarry Smith Notes: 8018fa74d514SMatthew G. Knepley If the `DM` is of type `DMPLEX` and the field is of type `PetscFE`, then this function completes the label using `DMPlexLabelComplete()`. 8019fa74d514SMatthew G. Knepley 8020aeebefc2SPierre Jolivet Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 802173ff1848SBarry Smith .vb 802273ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 802373ff1848SBarry Smith .ve 802456cf3b9cSMatthew G. Knepley 8025a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 802656cf3b9cSMatthew G. Knepley 802720f4b53cSBarry Smith .vb 802820f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 802920f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 803020f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 803120f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 803220f4b53cSBarry Smith .ve 803356cf3b9cSMatthew G. Knepley + dim - the spatial dimension 803456cf3b9cSMatthew G. Knepley . Nf - the number of fields 803556cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 803656cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 803756cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 803856cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 803956cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 804056cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 804156cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 804256cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 804356cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 804456cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 804556cf3b9cSMatthew G. Knepley . t - current time 804656cf3b9cSMatthew G. Knepley . x - coordinates of the current point 804756cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 804856cf3b9cSMatthew G. Knepley . constants - constant parameters 804956cf3b9cSMatthew G. Knepley - bcval - output values at the current point 805056cf3b9cSMatthew G. Knepley 80511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 8052a6ba4734SToby Isaac @*/ 8053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 8054d71ae5a4SJacob Faibussowitsch { 8055e5e52638SMatthew G. Knepley PetscDS ds; 8056a6ba4734SToby Isaac 8057a6ba4734SToby Isaac PetscFunctionBegin; 8058a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8059783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 806045480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 806145480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 806245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 806345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 806401a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 80659566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8066799db056SMatthew G. Knepley /* Complete label */ 8067799db056SMatthew G. Knepley if (label) { 8068799db056SMatthew G. Knepley PetscObject obj; 8069799db056SMatthew G. Knepley PetscClassId id; 8070799db056SMatthew G. Knepley 8071799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 8072799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 8073799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 8074799db056SMatthew G. Knepley DM plex; 8075799db056SMatthew G. Knepley 8076799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 8077799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 8078799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 8079799db056SMatthew G. Knepley } 8080799db056SMatthew G. Knepley } 80819566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 80823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8083a6ba4734SToby Isaac } 8084a6ba4734SToby Isaac 808545480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 8086d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 8087d71ae5a4SJacob Faibussowitsch { 8088e5e52638SMatthew G. Knepley PetscDS ds; 8089dff059c6SToby Isaac DMBoundary *lastnext; 8090e6f8dbb6SToby Isaac DSBoundary dsbound; 8091e6f8dbb6SToby Isaac 8092e6f8dbb6SToby Isaac PetscFunctionBegin; 80939566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 8094e5e52638SMatthew G. Knepley dsbound = ds->boundary; 809547a1f5adSToby Isaac if (dm->boundary) { 809647a1f5adSToby Isaac DMBoundary next = dm->boundary; 809747a1f5adSToby Isaac 809847a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 80993ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 810047a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 810147a1f5adSToby Isaac while (next) { 810247a1f5adSToby Isaac DMBoundary b = next; 810347a1f5adSToby Isaac 810447a1f5adSToby Isaac next = b->next; 81059566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8106a6ba4734SToby Isaac } 810747a1f5adSToby Isaac dm->boundary = NULL; 8108a6ba4734SToby Isaac } 810947a1f5adSToby Isaac 8110f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8111e6f8dbb6SToby Isaac while (dsbound) { 8112e6f8dbb6SToby Isaac DMBoundary dmbound; 8113e6f8dbb6SToby Isaac 81149566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8115e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 811645480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 811747a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8118dff059c6SToby Isaac *lastnext = dmbound; 8119f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8120dff059c6SToby Isaac dsbound = dsbound->next; 8121a6ba4734SToby Isaac } 81223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8123a6ba4734SToby Isaac } 8124a6ba4734SToby Isaac 8125bb7acecfSBarry Smith /* TODO: missing manual page */ 8126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8127d71ae5a4SJacob Faibussowitsch { 8128b95f2879SToby Isaac DMBoundary b; 8129a6ba4734SToby Isaac 8130a6ba4734SToby Isaac PetscFunctionBegin; 8131a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81324f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8133a6ba4734SToby Isaac *isBd = PETSC_FALSE; 81349566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8135b95f2879SToby Isaac b = dm->boundary; 813657508eceSPierre Jolivet while (b && !*isBd) { 8137e6f8dbb6SToby Isaac DMLabel label = b->label; 8138e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8139a6ba4734SToby Isaac PetscInt i; 8140a6ba4734SToby Isaac 814145480ffeSMatthew G. Knepley if (label) { 814257508eceSPierre Jolivet for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8143a6ba4734SToby Isaac } 8144a6ba4734SToby Isaac b = b->next; 8145a6ba4734SToby Isaac } 81463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8147a6ba4734SToby Isaac } 81484d6f44ffSToby Isaac 814901468941SMatthew G. Knepley /*@ 815001468941SMatthew G. Knepley DMHasBound - Determine whether a bound condition was specified 815101468941SMatthew G. Knepley 815201468941SMatthew G. Knepley Logically collective 815301468941SMatthew G. Knepley 815401468941SMatthew G. Knepley Input Parameter: 815501468941SMatthew G. Knepley . dm - The `DM`, with a `PetscDS` that matches the problem being constrained 815601468941SMatthew G. Knepley 815701468941SMatthew G. Knepley Output Parameter: 815801468941SMatthew G. Knepley . hasBound - Flag indicating if a bound condition was specified 815901468941SMatthew G. Knepley 816001468941SMatthew G. Knepley Level: intermediate 816101468941SMatthew G. Knepley 816201468941SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DSAddBoundary()`, `PetscDSAddBoundary()` 816301468941SMatthew G. Knepley @*/ 816401468941SMatthew G. Knepley PetscErrorCode DMHasBound(DM dm, PetscBool *hasBound) 816501468941SMatthew G. Knepley { 816601468941SMatthew G. Knepley PetscDS ds; 816701468941SMatthew G. Knepley PetscInt Nf, numBd; 816801468941SMatthew G. Knepley 816901468941SMatthew G. Knepley PetscFunctionBegin; 817001468941SMatthew G. Knepley *hasBound = PETSC_FALSE; 817101468941SMatthew G. Knepley PetscCall(DMGetDS(dm, &ds)); 817201468941SMatthew G. Knepley PetscCall(PetscDSGetNumFields(ds, &Nf)); 817301468941SMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 81742192575eSBarry Smith PetscSimplePointFn *lfunc, *ufunc; 817501468941SMatthew G. Knepley 817601468941SMatthew G. Knepley PetscCall(PetscDSGetLowerBound(ds, f, &lfunc, NULL)); 817701468941SMatthew G. Knepley PetscCall(PetscDSGetUpperBound(ds, f, &ufunc, NULL)); 817801468941SMatthew G. Knepley if (lfunc || ufunc) *hasBound = PETSC_TRUE; 817901468941SMatthew G. Knepley } 818001468941SMatthew G. Knepley 818101468941SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(ds, &numBd)); 818201468941SMatthew G. Knepley PetscCall(PetscDSUpdateBoundaryLabels(ds, dm)); 818301468941SMatthew G. Knepley for (PetscInt b = 0; b < numBd; ++b) { 818401468941SMatthew G. Knepley PetscWeakForm wf; 818501468941SMatthew G. Knepley DMBoundaryConditionType type; 818601468941SMatthew G. Knepley const char *name; 818701468941SMatthew G. Knepley DMLabel label; 818801468941SMatthew G. Knepley PetscInt numids; 818901468941SMatthew G. Knepley const PetscInt *ids; 819001468941SMatthew G. Knepley PetscInt field, Nc; 819101468941SMatthew G. Knepley const PetscInt *comps; 819201468941SMatthew G. Knepley void (*bvfunc)(void); 819301468941SMatthew G. Knepley void *ctx; 819401468941SMatthew G. Knepley 819501468941SMatthew G. Knepley PetscCall(PetscDSGetBoundary(ds, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx)); 819601468941SMatthew G. Knepley if (type == DM_BC_LOWER_BOUND || type == DM_BC_UPPER_BOUND) *hasBound = PETSC_TRUE; 819701468941SMatthew G. Knepley } 819801468941SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 819901468941SMatthew G. Knepley } 820001468941SMatthew G. Knepley 82014d6f44ffSToby Isaac /*@C 8202bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8203a6e0b375SMatthew G. Knepley 820420f4b53cSBarry Smith Collective 82054d6f44ffSToby Isaac 82064d6f44ffSToby Isaac Input Parameters: 8207bb7acecfSBarry Smith + dm - The `DM` 82080709b2feSToby Isaac . time - The time 82094d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 82104d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 82114d6f44ffSToby Isaac - mode - The insertion mode for values 82124d6f44ffSToby Isaac 82134d6f44ffSToby Isaac Output Parameter: 82144d6f44ffSToby Isaac . X - vector 82154d6f44ffSToby Isaac 821620f4b53cSBarry Smith Calling sequence of `funcs`: 82174d6f44ffSToby Isaac + dim - The spatial dimension 82188ec8862eSJed Brown . time - The time at which to sample 82194d6f44ffSToby Isaac . x - The coordinates 822077b739a6SMatthew Knepley . Nc - The number of components 82214d6f44ffSToby Isaac . u - The output field values 82224d6f44ffSToby Isaac - ctx - optional user-defined function context 82234d6f44ffSToby Isaac 82244d6f44ffSToby Isaac Level: developer 82254d6f44ffSToby Isaac 8226bb7acecfSBarry Smith Developer Notes: 8227bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8228bb7acecfSBarry Smith 8229bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8230bb7acecfSBarry Smith 82311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 82324d6f44ffSToby Isaac @*/ 8233a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8234d71ae5a4SJacob Faibussowitsch { 82354d6f44ffSToby Isaac Vec localX; 82364d6f44ffSToby Isaac 82374d6f44ffSToby Isaac PetscFunctionBegin; 82384d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8239708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 82409566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8241f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 82429566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 82439566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 82449566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 82459566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8246708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 82473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82484d6f44ffSToby Isaac } 82494d6f44ffSToby Isaac 8250a6e0b375SMatthew G. Knepley /*@C 8251bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8252a6e0b375SMatthew G. Knepley 825320f4b53cSBarry Smith Not Collective 8254a6e0b375SMatthew G. Knepley 8255a6e0b375SMatthew G. Knepley Input Parameters: 8256bb7acecfSBarry Smith + dm - The `DM` 8257a6e0b375SMatthew G. Knepley . time - The time 8258a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8259a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8260a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8261a6e0b375SMatthew G. Knepley 8262a6e0b375SMatthew G. Knepley Output Parameter: 8263a6e0b375SMatthew G. Knepley . localX - vector 8264a6e0b375SMatthew G. Knepley 826520f4b53cSBarry Smith Calling sequence of `funcs`: 8266a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8267a4e35b19SJacob Faibussowitsch . time - The current timestep 8268a6e0b375SMatthew G. Knepley . x - The coordinates 826977b739a6SMatthew Knepley . Nc - The number of components 8270a6e0b375SMatthew G. Knepley . u - The output field values 8271a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8272a6e0b375SMatthew G. Knepley 8273a6e0b375SMatthew G. Knepley Level: developer 8274a6e0b375SMatthew G. Knepley 8275bb7acecfSBarry Smith Developer Notes: 8276bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8277bb7acecfSBarry Smith 8278bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8279bb7acecfSBarry Smith 82801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8281a6e0b375SMatthew G. Knepley @*/ 8282a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8283d71ae5a4SJacob Faibussowitsch { 82844d6f44ffSToby Isaac PetscFunctionBegin; 82854d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8286064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8287fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 82883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82894d6f44ffSToby Isaac } 82904d6f44ffSToby Isaac 8291a6e0b375SMatthew G. Knepley /*@C 8292bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8293a6e0b375SMatthew G. Knepley 829420f4b53cSBarry Smith Collective 8295a6e0b375SMatthew G. Knepley 8296a6e0b375SMatthew G. Knepley Input Parameters: 8297bb7acecfSBarry Smith + dm - The `DM` 8298a6e0b375SMatthew G. Knepley . time - The time 8299a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8300a4e35b19SJacob Faibussowitsch . ids - The ids 8301a4e35b19SJacob Faibussowitsch . Nc - The number of components 8302a4e35b19SJacob Faibussowitsch . comps - The components 8303bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8304a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8305bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8306a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8307a6e0b375SMatthew G. Knepley 8308a6e0b375SMatthew G. Knepley Output Parameter: 8309a6e0b375SMatthew G. Knepley . X - vector 8310a6e0b375SMatthew G. Knepley 831120f4b53cSBarry Smith Calling sequence of `funcs`: 8312a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8313a4e35b19SJacob Faibussowitsch . time - The current timestep 8314a6e0b375SMatthew G. Knepley . x - The coordinates 831577b739a6SMatthew Knepley . Nc - The number of components 8316a6e0b375SMatthew G. Knepley . u - The output field values 8317a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8318a6e0b375SMatthew G. Knepley 8319a6e0b375SMatthew G. Knepley Level: developer 8320a6e0b375SMatthew G. Knepley 8321bb7acecfSBarry Smith Developer Notes: 8322bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8323bb7acecfSBarry Smith 8324bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8325bb7acecfSBarry Smith 83261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8327a6e0b375SMatthew G. Knepley @*/ 8328a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8329d71ae5a4SJacob Faibussowitsch { 83302c53366bSMatthew G. Knepley Vec localX; 83312c53366bSMatthew G. Knepley 83322c53366bSMatthew G. Knepley PetscFunctionBegin; 83332c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 83349566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8335f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 83369566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 83379566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 83389566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 83399566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 83403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83412c53366bSMatthew G. Knepley } 83422c53366bSMatthew G. Knepley 8343a6e0b375SMatthew G. Knepley /*@C 8344bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8345a6e0b375SMatthew G. Knepley 834620f4b53cSBarry Smith Not Collective 8347a6e0b375SMatthew G. Knepley 8348a6e0b375SMatthew G. Knepley Input Parameters: 8349bb7acecfSBarry Smith + dm - The `DM` 8350a6e0b375SMatthew G. Knepley . time - The time 8351bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8352a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8353a4e35b19SJacob Faibussowitsch . ids - The ids 8354a4e35b19SJacob Faibussowitsch . Nc - The number of components 8355a4e35b19SJacob Faibussowitsch . comps - The components 8356a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8357a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8358a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8359a6e0b375SMatthew G. Knepley 8360a6e0b375SMatthew G. Knepley Output Parameter: 8361a6e0b375SMatthew G. Knepley . localX - vector 8362a6e0b375SMatthew G. Knepley 836320f4b53cSBarry Smith Calling sequence of `funcs`: 8364a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8365a4e35b19SJacob Faibussowitsch . time - The current time 8366a6e0b375SMatthew G. Knepley . x - The coordinates 836777b739a6SMatthew Knepley . Nc - The number of components 8368a6e0b375SMatthew G. Knepley . u - The output field values 8369a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8370a6e0b375SMatthew G. Knepley 8371a6e0b375SMatthew G. Knepley Level: developer 8372a6e0b375SMatthew G. Knepley 8373bb7acecfSBarry Smith Developer Notes: 8374bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8375bb7acecfSBarry Smith 8376bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8377bb7acecfSBarry Smith 83781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8379a6e0b375SMatthew G. Knepley @*/ 8380a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8381d71ae5a4SJacob Faibussowitsch { 83824d6f44ffSToby Isaac PetscFunctionBegin; 83834d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8384064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8385fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 83863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83874d6f44ffSToby Isaac } 83882716604bSToby Isaac 8389a6e0b375SMatthew G. Knepley /*@C 8390bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8391a6e0b375SMatthew G. Knepley 839220f4b53cSBarry Smith Not Collective 8393a6e0b375SMatthew G. Knepley 8394a6e0b375SMatthew G. Knepley Input Parameters: 8395bb7acecfSBarry Smith + dm - The `DM` 8396a6e0b375SMatthew G. Knepley . time - The time 839720f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8398a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8399a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8400a6e0b375SMatthew G. Knepley 8401a6e0b375SMatthew G. Knepley Output Parameter: 8402a6e0b375SMatthew G. Knepley . localX - The output vector 8403a6e0b375SMatthew G. Knepley 840420f4b53cSBarry Smith Calling sequence of `funcs`: 8405a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8406a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8407a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8408a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8409a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8410a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8411a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8412a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8413a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8414a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8415a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8416a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8417a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8418a6e0b375SMatthew G. Knepley . t - The current time 8419a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8420a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8421a6e0b375SMatthew G. Knepley . constants - The value of each constant 8422a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8423a6e0b375SMatthew G. Knepley 842473ff1848SBarry Smith Level: intermediate 842573ff1848SBarry Smith 8426bb7acecfSBarry Smith Note: 8427bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8428bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8429bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8430a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8431a6e0b375SMatthew G. Knepley 8432bb7acecfSBarry Smith Developer Notes: 8433bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8434bb7acecfSBarry Smith 8435bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8436bb7acecfSBarry Smith 8437a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8438a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8439a6e0b375SMatthew G. Knepley @*/ 8440a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8441d71ae5a4SJacob Faibussowitsch { 84428c6c5593SMatthew G. Knepley PetscFunctionBegin; 84438c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8444eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 84458c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8446fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 84473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84488c6c5593SMatthew G. Knepley } 84498c6c5593SMatthew G. Knepley 8450a6e0b375SMatthew G. Knepley /*@C 8451a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8452a6e0b375SMatthew G. Knepley 845320f4b53cSBarry Smith Not Collective 8454a6e0b375SMatthew G. Knepley 8455a6e0b375SMatthew G. Knepley Input Parameters: 8456bb7acecfSBarry Smith + dm - The `DM` 8457a6e0b375SMatthew G. Knepley . time - The time 8458bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8459a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8460a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8461bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 846220f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8463a6e0b375SMatthew G. Knepley . localU - The input field vector 8464a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8465a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8466a6e0b375SMatthew G. Knepley 8467a6e0b375SMatthew G. Knepley Output Parameter: 8468a6e0b375SMatthew G. Knepley . localX - The output vector 8469a6e0b375SMatthew G. Knepley 847020f4b53cSBarry Smith Calling sequence of `funcs`: 8471a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8472a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8473a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8474a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8475a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8476a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8477a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8478a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8479a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8480a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8481a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8482a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8483a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8484a6e0b375SMatthew G. Knepley . t - The current time 8485a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8486a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8487a6e0b375SMatthew G. Knepley . constants - The value of each constant 8488a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8489a6e0b375SMatthew G. Knepley 849073ff1848SBarry Smith Level: intermediate 849173ff1848SBarry Smith 8492bb7acecfSBarry Smith Note: 8493bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8494bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8495bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8496a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8497a6e0b375SMatthew G. Knepley 8498bb7acecfSBarry Smith Developer Notes: 8499bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8500bb7acecfSBarry Smith 8501bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8502bb7acecfSBarry Smith 85031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8504a6e0b375SMatthew G. Knepley @*/ 8505a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8506d71ae5a4SJacob Faibussowitsch { 85078c6c5593SMatthew G. Knepley PetscFunctionBegin; 85088c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8509064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8510064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8511fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 85123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85138c6c5593SMatthew G. Knepley } 85148c6c5593SMatthew G. Knepley 85152716604bSToby Isaac /*@C 8516d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8517d29d7c6eSMatthew G. Knepley 851820f4b53cSBarry Smith Not Collective 8519d29d7c6eSMatthew G. Knepley 8520d29d7c6eSMatthew G. Knepley Input Parameters: 8521bb7acecfSBarry Smith + dm - The `DM` 8522d29d7c6eSMatthew G. Knepley . time - The time 8523bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8524d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8525d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8526bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 852720f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8528d29d7c6eSMatthew G. Knepley . U - The input field vector 8529d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8530d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8531d29d7c6eSMatthew G. Knepley 8532d29d7c6eSMatthew G. Knepley Output Parameter: 8533d29d7c6eSMatthew G. Knepley . X - The output vector 8534d29d7c6eSMatthew G. Knepley 853520f4b53cSBarry Smith Calling sequence of `funcs`: 8536d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8537d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8538d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8539d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8540d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8541d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8542d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8543d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8544d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8545d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8546d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8547d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8548d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8549d29d7c6eSMatthew G. Knepley . t - The current time 8550d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8551d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8552d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8553d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8554d29d7c6eSMatthew G. Knepley 855573ff1848SBarry Smith Level: intermediate 855673ff1848SBarry Smith 8557bb7acecfSBarry Smith Note: 8558bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8559bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8560bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8561d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8562d29d7c6eSMatthew G. Knepley 8563bb7acecfSBarry Smith Developer Notes: 8564bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8565bb7acecfSBarry Smith 8566bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8567bb7acecfSBarry Smith 85681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8569d29d7c6eSMatthew G. Knepley @*/ 8570a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8571d71ae5a4SJacob Faibussowitsch { 8572d29d7c6eSMatthew G. Knepley DM dmIn; 8573d29d7c6eSMatthew G. Knepley Vec localU, localX; 8574d29d7c6eSMatthew G. Knepley 8575d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8576d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8577d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8578d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8579d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8580f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 858172fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 858272fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8583d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8584d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8585d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8586d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8587d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 85883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8589d29d7c6eSMatthew G. Knepley } 8590d29d7c6eSMatthew G. Knepley 8591d29d7c6eSMatthew G. Knepley /*@C 8592ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8593ece3a9fcSMatthew G. Knepley 859420f4b53cSBarry Smith Not Collective 8595ece3a9fcSMatthew G. Knepley 8596ece3a9fcSMatthew G. Knepley Input Parameters: 8597bb7acecfSBarry Smith + dm - The `DM` 8598ece3a9fcSMatthew G. Knepley . time - The time 8599bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8600ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8601ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8602bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 860320f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8604ece3a9fcSMatthew G. Knepley . localU - The input field vector 8605ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8606ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8607ece3a9fcSMatthew G. Knepley 8608ece3a9fcSMatthew G. Knepley Output Parameter: 8609ece3a9fcSMatthew G. Knepley . localX - The output vector 8610ece3a9fcSMatthew G. Knepley 861120f4b53cSBarry Smith Calling sequence of `funcs`: 8612ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8613ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8614ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8615ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8616ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8617ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8618ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8619ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8620ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8621ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8622ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8623ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8624ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8625ece3a9fcSMatthew G. Knepley . t - The current time 8626ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8627ece3a9fcSMatthew G. Knepley . n - The face normal 8628ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8629ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8630ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8631ece3a9fcSMatthew G. Knepley 863273ff1848SBarry Smith Level: intermediate 863373ff1848SBarry Smith 8634ece3a9fcSMatthew G. Knepley Note: 8635bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8636bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8637bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8638ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8639ece3a9fcSMatthew G. Knepley 8640bb7acecfSBarry Smith Developer Notes: 8641bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8642bb7acecfSBarry Smith 8643bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8644bb7acecfSBarry Smith 86451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8646ece3a9fcSMatthew G. Knepley @*/ 8647a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8648d71ae5a4SJacob Faibussowitsch { 8649ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8650ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8651064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8652064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8653fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 86543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8655ece3a9fcSMatthew G. Knepley } 8656ece3a9fcSMatthew G. Knepley 8657ece3a9fcSMatthew G. Knepley /*@C 86582716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 86592716604bSToby Isaac 866020f4b53cSBarry Smith Collective 8661bb7acecfSBarry Smith 86622716604bSToby Isaac Input Parameters: 8663bb7acecfSBarry Smith + dm - The `DM` 86640709b2feSToby Isaac . time - The time 86652716604bSToby Isaac . funcs - The functions to evaluate for each field component 86662716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8667574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 86682716604bSToby Isaac 86692716604bSToby Isaac Output Parameter: 86702716604bSToby Isaac . diff - The diff ||u - u_h||_2 86712716604bSToby Isaac 86722716604bSToby Isaac Level: developer 86732716604bSToby Isaac 8674bb7acecfSBarry Smith Developer Notes: 8675bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8676bb7acecfSBarry Smith 8677bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8678bb7acecfSBarry Smith 86791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 86802716604bSToby Isaac @*/ 8681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8682d71ae5a4SJacob Faibussowitsch { 86832716604bSToby Isaac PetscFunctionBegin; 86842716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8685b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8686fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 86873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 86882716604bSToby Isaac } 8689b698f381SToby Isaac 8690b698f381SToby Isaac /*@C 8691b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8692b698f381SToby Isaac 869320f4b53cSBarry Smith Collective 8694d083f849SBarry Smith 8695b698f381SToby Isaac Input Parameters: 8696bb7acecfSBarry Smith + dm - The `DM` 8697a4e35b19SJacob Faibussowitsch . time - The time 8698b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8699b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8700574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8701b698f381SToby Isaac - n - The vector to project along 8702b698f381SToby Isaac 8703b698f381SToby Isaac Output Parameter: 8704b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8705b698f381SToby Isaac 8706b698f381SToby Isaac Level: developer 8707b698f381SToby Isaac 8708bb7acecfSBarry Smith Developer Notes: 8709bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8710bb7acecfSBarry Smith 8711bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8712bb7acecfSBarry Smith 87131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8714b698f381SToby Isaac @*/ 8715d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8716d71ae5a4SJacob Faibussowitsch { 8717b698f381SToby Isaac PetscFunctionBegin; 8718b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8719b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8720fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 87213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8722b698f381SToby Isaac } 8723b698f381SToby Isaac 87242a16baeaSToby Isaac /*@C 87252a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 87262a16baeaSToby Isaac 872720f4b53cSBarry Smith Collective 8728d083f849SBarry Smith 87292a16baeaSToby Isaac Input Parameters: 8730bb7acecfSBarry Smith + dm - The `DM` 87312a16baeaSToby Isaac . time - The time 87322a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 87332a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8734574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 87352a16baeaSToby Isaac 87362a16baeaSToby Isaac Output Parameter: 87372a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 87382a16baeaSToby Isaac 87392a16baeaSToby Isaac Level: developer 87402a16baeaSToby Isaac 8741bb7acecfSBarry Smith Developer Notes: 8742bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8743bb7acecfSBarry Smith 8744bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8745bb7acecfSBarry Smith 874642747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 87472a16baeaSToby Isaac @*/ 8748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8749d71ae5a4SJacob Faibussowitsch { 87502a16baeaSToby Isaac PetscFunctionBegin; 87512a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 87522a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8753fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 87543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87552a16baeaSToby Isaac } 87562a16baeaSToby Isaac 8757df0b854cSToby Isaac /*@C 8758bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8759502a2867SDave May 8760502a2867SDave May Not Collective 8761502a2867SDave May 8762502a2867SDave May Input Parameter: 8763bb7acecfSBarry Smith . dm - The `DM` 8764502a2867SDave May 87650a19bb7dSprj- Output Parameters: 87660a19bb7dSprj- + nranks - the number of neighbours 87670a19bb7dSprj- - ranks - the neighbors ranks 8768502a2867SDave May 87699bdbcad8SBarry Smith Level: beginner 87709bdbcad8SBarry Smith 8771bb7acecfSBarry Smith Note: 8772bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8773502a2867SDave May 87741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8775502a2867SDave May @*/ 8776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8777d71ae5a4SJacob Faibussowitsch { 8778502a2867SDave May PetscFunctionBegin; 8779502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8780fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 87813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8782502a2867SDave May } 8783502a2867SDave May 8784531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8785531c7667SBarry Smith 8786531c7667SBarry Smith /* 8787531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 87882b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8789531c7667SBarry Smith */ 879066976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8791d71ae5a4SJacob Faibussowitsch { 8792531c7667SBarry Smith PetscFunctionBegin; 8793531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8794531c7667SBarry Smith Vec x1local; 8795531c7667SBarry Smith DM dm; 87969566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 87977a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 87989566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 87999566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 88009566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8801531c7667SBarry Smith x1 = x1local; 8802531c7667SBarry Smith } 88039566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8804531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8805531c7667SBarry Smith DM dm; 88069566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 88079566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8808531c7667SBarry Smith } 88093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8810531c7667SBarry Smith } 8811531c7667SBarry Smith 8812531c7667SBarry Smith /*@ 8813bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8814531c7667SBarry Smith 8815a4e35b19SJacob Faibussowitsch Input Parameters: 8816a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8817a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8818531c7667SBarry Smith 88199bdbcad8SBarry Smith Level: advanced 88209bdbcad8SBarry Smith 882173ff1848SBarry Smith Developer Note: 882273ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8823531c7667SBarry Smith 88241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8825531c7667SBarry Smith @*/ 8826d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8827d71ae5a4SJacob Faibussowitsch { 8828531c7667SBarry Smith PetscFunctionBegin; 8829531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 88303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8831531c7667SBarry Smith } 88328320bc6fSPatrick Sanan 88338320bc6fSPatrick Sanan /*@ 8834bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 88358320bc6fSPatrick Sanan 88368320bc6fSPatrick Sanan Collective 88378320bc6fSPatrick Sanan 88388320bc6fSPatrick Sanan Input Parameters: 8839bb7acecfSBarry Smith + dm1 - the first `DM` 8840bb7acecfSBarry Smith - dm2 - the second `DM` 88418320bc6fSPatrick Sanan 88428320bc6fSPatrick Sanan Output Parameters: 8843bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8844bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 88458320bc6fSPatrick Sanan 884620f4b53cSBarry Smith Level: advanced 884720f4b53cSBarry Smith 88488320bc6fSPatrick Sanan Notes: 8849bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 88503d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 88518320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8852bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 88533d862458SPatrick Sanan decomposition, but hold different data. 88548320bc6fSPatrick Sanan 88558320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8856bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 88578320bc6fSPatrick Sanan 8858bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 88598320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 88608320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8861bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 88628320bc6fSPatrick Sanan 8863bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8864bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 88658320bc6fSPatrick Sanan .vb 88668320bc6fSPatrick Sanan ... 88679566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 88688320bc6fSPatrick Sanan if (set && compatible) { 88699566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 88709566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 88719566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 88728320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 88738320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 88748320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 88758320bc6fSPatrick Sanan } 88768320bc6fSPatrick Sanan } 88779566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 88789566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 88798320bc6fSPatrick Sanan } else { 88808320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 88818320bc6fSPatrick Sanan } 88828320bc6fSPatrick Sanan ... 88838320bc6fSPatrick Sanan .ve 88848320bc6fSPatrick Sanan 8885bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 88868320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 88878320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 88888320bc6fSPatrick Sanan always check the "set" output parameter. 88898320bc6fSPatrick Sanan 8890bb7acecfSBarry Smith A `DM` is always compatible with itself. 88918320bc6fSPatrick Sanan 8892bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 88938320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 88948320bc6fSPatrick Sanan incompatible. 88958320bc6fSPatrick Sanan 88968320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8897bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 88988320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 88998320bc6fSPatrick Sanan 890073ff1848SBarry Smith Developer Note: 8901bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 89023d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8903a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8904bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 89058320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 89063d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8907bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 89088320bc6fSPatrick Sanan 89091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 89108320bc6fSPatrick Sanan @*/ 8911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8912d71ae5a4SJacob Faibussowitsch { 89138320bc6fSPatrick Sanan PetscMPIInt compareResult; 89148320bc6fSPatrick Sanan DMType type, type2; 89158320bc6fSPatrick Sanan PetscBool sameType; 89168320bc6fSPatrick Sanan 89178320bc6fSPatrick Sanan PetscFunctionBegin; 8918a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 89198320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 89208320bc6fSPatrick Sanan 89218320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8922a5bc1bf3SBarry Smith if (dm1 == dm2) { 89238320bc6fSPatrick Sanan *set = PETSC_TRUE; 89248320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 89253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89268320bc6fSPatrick Sanan } 89278320bc6fSPatrick Sanan 89288320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 89298320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 89308320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 89318320bc6fSPatrick Sanan determined by the implementation-specific logic */ 89329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 89338320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 89348320bc6fSPatrick Sanan *set = PETSC_TRUE; 89358320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 89363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89378320bc6fSPatrick Sanan } 89388320bc6fSPatrick Sanan 89398320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8940a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8941dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 89423ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 89438320bc6fSPatrick Sanan } 89448320bc6fSPatrick Sanan 8945a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 89468320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 89479566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 89489566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 89499566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 89508320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8951dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 89528320bc6fSPatrick Sanan } else { 89538320bc6fSPatrick Sanan *set = PETSC_FALSE; 89548320bc6fSPatrick Sanan } 89553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 89568320bc6fSPatrick Sanan } 8957c0f0dcc3SMatthew G. Knepley 8958c0f0dcc3SMatthew G. Knepley /*@C 8959bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8960c0f0dcc3SMatthew G. Knepley 896120f4b53cSBarry Smith Logically Collective 8962c0f0dcc3SMatthew G. Knepley 8963c0f0dcc3SMatthew G. Knepley Input Parameters: 896460225df5SJacob Faibussowitsch + dm - the `DM` 8965c0f0dcc3SMatthew G. Knepley . f - the monitor function 896620f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 896749abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence 8968c0f0dcc3SMatthew G. Knepley 896920f4b53cSBarry Smith Options Database Key: 897060225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8971c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8972c0f0dcc3SMatthew G. Knepley 89739bdbcad8SBarry Smith Level: intermediate 89749bdbcad8SBarry Smith 8975bb7acecfSBarry Smith Note: 8976c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8977bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8978c0f0dcc3SMatthew G. Knepley order in which they were set. 8979c0f0dcc3SMatthew G. Knepley 898073ff1848SBarry Smith Fortran Note: 8981bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8982bb7acecfSBarry Smith 898373ff1848SBarry Smith Developer Note: 8984bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8985c0f0dcc3SMatthew G. Knepley 898649abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn` 8987c0f0dcc3SMatthew G. Knepley @*/ 898849abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy) 8989d71ae5a4SJacob Faibussowitsch { 8990c0f0dcc3SMatthew G. Knepley PetscInt m; 8991c0f0dcc3SMatthew G. Knepley 8992c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8993c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8994c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8995c0f0dcc3SMatthew G. Knepley PetscBool identical; 8996c0f0dcc3SMatthew G. Knepley 89979566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 89983ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8999c0f0dcc3SMatthew G. Knepley } 90007a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 9001c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 9002c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 9003835f2295SStefano Zampini dm->monitorcontext[dm->numbermonitors++] = mctx; 90043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9005c0f0dcc3SMatthew G. Knepley } 9006c0f0dcc3SMatthew G. Knepley 9007c0f0dcc3SMatthew G. Knepley /*@ 9008bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 9009c0f0dcc3SMatthew G. Knepley 901020f4b53cSBarry Smith Logically Collective 9011c0f0dcc3SMatthew G. Knepley 9012c0f0dcc3SMatthew G. Knepley Input Parameter: 9013c0f0dcc3SMatthew G. Knepley . dm - the DM 9014c0f0dcc3SMatthew G. Knepley 9015c0f0dcc3SMatthew G. Knepley Options Database Key: 9016c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 9017bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 9018c0f0dcc3SMatthew G. Knepley set via the options database 9019c0f0dcc3SMatthew G. Knepley 90209bdbcad8SBarry Smith Level: intermediate 90219bdbcad8SBarry Smith 9022bb7acecfSBarry Smith Note: 9023bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 9024c0f0dcc3SMatthew G. Knepley 90251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 9026c0f0dcc3SMatthew G. Knepley @*/ 9027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 9028d71ae5a4SJacob Faibussowitsch { 9029c0f0dcc3SMatthew G. Knepley PetscInt m; 9030c0f0dcc3SMatthew G. Knepley 9031c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9032c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9033c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 90349566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 9035c0f0dcc3SMatthew G. Knepley } 9036c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 90373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9038c0f0dcc3SMatthew G. Knepley } 9039c0f0dcc3SMatthew G. Knepley 9040c0f0dcc3SMatthew G. Knepley /*@C 9041c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 9042c0f0dcc3SMatthew G. Knepley 904320f4b53cSBarry Smith Collective 9044c0f0dcc3SMatthew G. Knepley 9045c0f0dcc3SMatthew G. Knepley Input Parameters: 9046bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 9047c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 9048c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 9049c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 905049abdd8aSBarry Smith . monitor - the monitor function, this must use a `PetscViewerFormat` as its context 9051bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 9052c0f0dcc3SMatthew G. Knepley 9053c0f0dcc3SMatthew G. Knepley Output Parameter: 9054c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 9055c0f0dcc3SMatthew G. Knepley 9056c0f0dcc3SMatthew G. Knepley Level: developer 9057c0f0dcc3SMatthew G. Knepley 9058648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 9059db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 906060225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 9061db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 9062c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 9063db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 9064bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 9065c0f0dcc3SMatthew G. Knepley @*/ 9066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 9067d71ae5a4SJacob Faibussowitsch { 9068c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 9069c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 9070c0f0dcc3SMatthew G. Knepley 9071c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 9072c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9073648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 9074c0f0dcc3SMatthew G. Knepley if (*flg) { 9075c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 9076c0f0dcc3SMatthew G. Knepley 90779566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 9078648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&viewer)); 90799566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 9080835f2295SStefano Zampini PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy)); 9081c0f0dcc3SMatthew G. Knepley } 90823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9083c0f0dcc3SMatthew G. Knepley } 9084c0f0dcc3SMatthew G. Knepley 9085c0f0dcc3SMatthew G. Knepley /*@ 9086c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 9087c0f0dcc3SMatthew G. Knepley 908820f4b53cSBarry Smith Collective 9089c0f0dcc3SMatthew G. Knepley 90902fe279fdSBarry Smith Input Parameter: 9091bb7acecfSBarry Smith . dm - The `DM` 9092c0f0dcc3SMatthew G. Knepley 9093c0f0dcc3SMatthew G. Knepley Level: developer 9094c0f0dcc3SMatthew G. Knepley 909573ff1848SBarry Smith Developer Note: 9096a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 9097a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 9098a4e35b19SJacob Faibussowitsch concept of discretization. 9099bb7acecfSBarry Smith 91001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 9101c0f0dcc3SMatthew G. Knepley @*/ 9102d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 9103d71ae5a4SJacob Faibussowitsch { 9104c0f0dcc3SMatthew G. Knepley PetscInt m; 9105c0f0dcc3SMatthew G. Knepley 9106c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 91073ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 9108c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 910948a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 91103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9111c0f0dcc3SMatthew G. Knepley } 91122e4af2aeSMatthew G. Knepley 91132e4af2aeSMatthew G. Knepley /*@ 9114bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 91152e4af2aeSMatthew G. Knepley 911620f4b53cSBarry Smith Collective 91172e4af2aeSMatthew G. Knepley 91182e4af2aeSMatthew G. Knepley Input Parameters: 9119bb7acecfSBarry Smith + dm - The `DM` 91206b867d5aSJose E. Roman - sol - The solution vector 91212e4af2aeSMatthew G. Knepley 91226b867d5aSJose E. Roman Input/Output Parameter: 912320f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 91246b867d5aSJose E. Roman contains the error in each field 91256b867d5aSJose E. Roman 91266b867d5aSJose E. Roman Output Parameter: 912720f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 912820f4b53cSBarry Smith 912920f4b53cSBarry Smith Level: developer 91302e4af2aeSMatthew G. Knepley 9131bb7acecfSBarry Smith Note: 9132bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 91332e4af2aeSMatthew G. Knepley 91341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 91352e4af2aeSMatthew G. Knepley @*/ 9136d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 9137d71ae5a4SJacob Faibussowitsch { 91382e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 91392e4af2aeSMatthew G. Knepley void **ctxs; 91402e4af2aeSMatthew G. Knepley PetscReal time; 91412e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 91422e4af2aeSMatthew G. Knepley 91432e4af2aeSMatthew G. Knepley PetscFunctionBegin; 91449566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91459566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 91469566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 91472e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 91482e4af2aeSMatthew G. Knepley PetscDS ds; 91492e4af2aeSMatthew G. Knepley DMLabel label; 91502e4af2aeSMatthew G. Knepley IS fieldIS; 91512e4af2aeSMatthew G. Knepley const PetscInt *fields; 91522e4af2aeSMatthew G. Knepley PetscInt dsNf; 91532e4af2aeSMatthew G. Knepley 915407218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 91559566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 91569566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 91572e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 91582e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 91599566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 91602e4af2aeSMatthew G. Knepley } 91619566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 91622e4af2aeSMatthew G. Knepley } 9163ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 91649566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 91659566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 91662e4af2aeSMatthew G. Knepley if (errorVec) { 91672e4af2aeSMatthew G. Knepley DM edm; 91682e4af2aeSMatthew G. Knepley DMPolytopeType ct; 91692e4af2aeSMatthew G. Knepley PetscBool simplex; 91702e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 91712e4af2aeSMatthew G. Knepley 91729566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 91739566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 91749566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 91759566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 91762e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 91779566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 91782e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 91792e4af2aeSMatthew G. Knepley PetscFE fe, efe; 91802e4af2aeSMatthew G. Knepley PetscQuadrature q; 91812e4af2aeSMatthew G. Knepley const char *name; 91822e4af2aeSMatthew G. Knepley 91839566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 91849566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 91859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 91869566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 91879566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 91889566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 91899566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 91909566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 91912e4af2aeSMatthew G. Knepley } 91929566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 91932e4af2aeSMatthew G. Knepley 91949566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 91959566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 91969566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 91979566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 91982e4af2aeSMatthew G. Knepley } 91999566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 92003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92012e4af2aeSMatthew G. Knepley } 92029a2a23afSMatthew G. Knepley 92039a2a23afSMatthew G. Knepley /*@ 9204bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 92059a2a23afSMatthew G. Knepley 920620f4b53cSBarry Smith Not Collective 92079a2a23afSMatthew G. Knepley 92089a2a23afSMatthew G. Knepley Input Parameter: 9209bb7acecfSBarry Smith . dm - The `DM` 92109a2a23afSMatthew G. Knepley 92119a2a23afSMatthew G. Knepley Output Parameter: 9212a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 92139a2a23afSMatthew G. Knepley 92149a2a23afSMatthew G. Knepley Level: advanced 92159a2a23afSMatthew G. Knepley 9216e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 92179a2a23afSMatthew G. Knepley @*/ 9218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9219d71ae5a4SJacob Faibussowitsch { 92209a2a23afSMatthew G. Knepley PetscFunctionBegin; 92219a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92229566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 92233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92249a2a23afSMatthew G. Knepley } 92259a2a23afSMatthew G. Knepley 92269a2a23afSMatthew G. Knepley /*@ 9227ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 92289a2a23afSMatthew G. Knepley 922920f4b53cSBarry Smith Not Collective 92309a2a23afSMatthew G. Knepley 92319a2a23afSMatthew G. Knepley Input Parameters: 9232bb7acecfSBarry Smith + dm - The `DM` 9233bb7acecfSBarry Smith . label - The `DMLabel` 9234ac17215fSMatthew G. Knepley . value - The label value indicating the region 9235ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 92369a2a23afSMatthew G. Knepley 92379a2a23afSMatthew G. Knepley Output Parameter: 9238bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 92399a2a23afSMatthew G. Knepley 92409bdbcad8SBarry Smith Level: advanced 92419bdbcad8SBarry Smith 9242bb7acecfSBarry Smith Note: 9243bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 924404c51a94SMatthew G. Knepley 9245e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 92469a2a23afSMatthew G. Knepley @*/ 9247d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9248d71ae5a4SJacob Faibussowitsch { 9249ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 925004c51a94SMatthew G. Knepley PetscBool has; 92519a2a23afSMatthew G. Knepley 92529a2a23afSMatthew G. Knepley PetscFunctionBegin; 92539a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92549a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92559a2a23afSMatthew G. Knepley key.label = label; 92569a2a23afSMatthew G. Knepley key.value = value; 9257ac17215fSMatthew G. Knepley key.part = part; 92589566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 92599566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 92609566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 92613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92629a2a23afSMatthew G. Knepley } 92639a2a23afSMatthew G. Knepley 92649a2a23afSMatthew G. Knepley /*@ 9265bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 92669a2a23afSMatthew G. Knepley 926720f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 92689a2a23afSMatthew G. Knepley 92699a2a23afSMatthew G. Knepley Input Parameters: 9270bb7acecfSBarry Smith + dm - The `DM` 9271bb7acecfSBarry Smith . label - The `DMLabel` 92729a2a23afSMatthew G. Knepley . value - The label value indicating the region 9273ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9274bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 92759a2a23afSMatthew G. Knepley 92769a2a23afSMatthew G. Knepley Level: advanced 92779a2a23afSMatthew G. Knepley 9278e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 92799a2a23afSMatthew G. Knepley @*/ 9280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9281d71ae5a4SJacob Faibussowitsch { 92829a2a23afSMatthew G. Knepley Vec old; 92839a2a23afSMatthew G. Knepley PetscHashAuxKey key; 92849a2a23afSMatthew G. Knepley 92859a2a23afSMatthew G. Knepley PetscFunctionBegin; 92869a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 92879a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 92889a2a23afSMatthew G. Knepley key.label = label; 92899a2a23afSMatthew G. Knepley key.value = value; 9290ac17215fSMatthew G. Knepley key.part = part; 92919566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 92929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 92939566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 92949566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9295d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 92963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92979a2a23afSMatthew G. Knepley } 92989a2a23afSMatthew G. Knepley 9299cc4c1da9SBarry Smith /*@ 9300bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 93019a2a23afSMatthew G. Knepley 930220f4b53cSBarry Smith Not Collective 93039a2a23afSMatthew G. Knepley 93049a2a23afSMatthew G. Knepley Input Parameter: 9305bb7acecfSBarry Smith . dm - The `DM` 93069a2a23afSMatthew G. Knepley 93079a2a23afSMatthew G. Knepley Output Parameters: 9308bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9309bb7acecfSBarry Smith . values - The label values for each `Vec` 9310bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 93119a2a23afSMatthew G. Knepley 93129bdbcad8SBarry Smith Level: advanced 93139bdbcad8SBarry Smith 9314bb7acecfSBarry Smith Note: 9315bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 93169a2a23afSMatthew G. Knepley 9317e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 93189a2a23afSMatthew G. Knepley @*/ 9319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9320d71ae5a4SJacob Faibussowitsch { 93219a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 93229a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 93239a2a23afSMatthew G. Knepley 93249a2a23afSMatthew G. Knepley PetscFunctionBegin; 93259a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 93264f572ea9SToby Isaac PetscAssertPointer(labels, 2); 93274f572ea9SToby Isaac PetscAssertPointer(values, 3); 93284f572ea9SToby Isaac PetscAssertPointer(parts, 4); 93299566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 93309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 93319566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 93329371c9d4SSatish Balay for (i = 0; i < n; ++i) { 93339371c9d4SSatish Balay labels[i] = keys[i].label; 93349371c9d4SSatish Balay values[i] = keys[i].value; 93359371c9d4SSatish Balay parts[i] = keys[i].part; 93369371c9d4SSatish Balay } 93379566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 93383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93399a2a23afSMatthew G. Knepley } 93409a2a23afSMatthew G. Knepley 93419a2a23afSMatthew G. Knepley /*@ 9342bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 93439a2a23afSMatthew G. Knepley 934420f4b53cSBarry Smith Not Collective 93459a2a23afSMatthew G. Knepley 93469a2a23afSMatthew G. Knepley Input Parameter: 9347bb7acecfSBarry Smith . dm - The `DM` 93489a2a23afSMatthew G. Knepley 93499a2a23afSMatthew G. Knepley Output Parameter: 9350bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 93519a2a23afSMatthew G. Knepley 93529a2a23afSMatthew G. Knepley Level: advanced 93539a2a23afSMatthew G. Knepley 9354bb7acecfSBarry Smith Note: 9355bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9356bb7acecfSBarry Smith 9357e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 93589a2a23afSMatthew G. Knepley @*/ 9359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9360d71ae5a4SJacob Faibussowitsch { 93619a2a23afSMatthew G. Knepley PetscFunctionBegin; 93629a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9363d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9364d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9365e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9366e4d5475eSStefano Zampini 9367e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 93689566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9369d705d0eaSStefano Zampini { 9370d705d0eaSStefano Zampini Vec *auxData; 9371d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9372d705d0eaSStefano Zampini 9373d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9374d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9375d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9376d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9377d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9378e4d5475eSStefano Zampini } 9379e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9380e4d5475eSStefano Zampini } 9381e4d5475eSStefano Zampini 9382e4d5475eSStefano Zampini /*@ 9383e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9384e4d5475eSStefano Zampini 9385e4d5475eSStefano Zampini Not Collective 9386e4d5475eSStefano Zampini 9387e4d5475eSStefano Zampini Input Parameter: 9388e4d5475eSStefano Zampini . dm - The `DM` 9389e4d5475eSStefano Zampini 9390e4d5475eSStefano Zampini Level: advanced 9391e4d5475eSStefano Zampini 9392e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9393e4d5475eSStefano Zampini @*/ 9394e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9395e4d5475eSStefano Zampini { 9396e4d5475eSStefano Zampini Vec *auxData; 9397e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9398e4d5475eSStefano Zampini 9399e4d5475eSStefano Zampini PetscFunctionBegin; 9400e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9401d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9402e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9403d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9404d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9405e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9406e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 94073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94089a2a23afSMatthew G. Knepley } 9409b5a892a1SMatthew G. Knepley 9410cc4c1da9SBarry Smith /*@ 9411bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9412b5a892a1SMatthew G. Knepley 941320f4b53cSBarry Smith Not Collective 9414b5a892a1SMatthew G. Knepley 9415b5a892a1SMatthew G. Knepley Input Parameters: 9416bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9417b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9418b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9419b5a892a1SMatthew G. Knepley 9420b5a892a1SMatthew G. Knepley Output Parameters: 9421bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9422b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9423b5a892a1SMatthew G. Knepley 9424b5a892a1SMatthew G. Knepley Level: advanced 9425b5a892a1SMatthew G. Knepley 9426bb7acecfSBarry Smith Note: 9427bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9428bb7acecfSBarry Smith 942985036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9430bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9431bb7acecfSBarry Smith 9432bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9433bb7acecfSBarry Smith 94341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9435b5a892a1SMatthew G. Knepley @*/ 9436d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9437d71ae5a4SJacob Faibussowitsch { 9438b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 943985036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9440b5a892a1SMatthew G. Knepley PetscInt o, c; 9441b5a892a1SMatthew G. Knepley 9442b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94439371c9d4SSatish Balay if (!nO) { 94449371c9d4SSatish Balay *ornt = 0; 94459371c9d4SSatish Balay *found = PETSC_TRUE; 94463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94479371c9d4SSatish Balay } 9448b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 944985036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9450b5a892a1SMatthew G. Knepley 94519371c9d4SSatish Balay for (c = 0; c < cS; ++c) 94529371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 94539371c9d4SSatish Balay if (c == cS) { 94549371c9d4SSatish Balay *ornt = o; 94559371c9d4SSatish Balay break; 94569371c9d4SSatish Balay } 9457b5a892a1SMatthew G. Knepley } 9458b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 94593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9460b5a892a1SMatthew G. Knepley } 9461b5a892a1SMatthew G. Knepley 9462cc4c1da9SBarry Smith /*@ 9463bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9464b5a892a1SMatthew G. Knepley 946520f4b53cSBarry Smith Not Collective 9466b5a892a1SMatthew G. Knepley 9467b5a892a1SMatthew G. Knepley Input Parameters: 9468bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9469b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9470b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9471b5a892a1SMatthew G. Knepley 94722fe279fdSBarry Smith Output Parameter: 9473bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9474b5a892a1SMatthew G. Knepley 9475b5a892a1SMatthew G. Knepley Level: advanced 9476b5a892a1SMatthew G. Knepley 9477bb7acecfSBarry Smith Note: 9478bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9479bb7acecfSBarry Smith 948073ff1848SBarry Smith Developer Note: 9481bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9482bb7acecfSBarry Smith 94831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9484b5a892a1SMatthew G. Knepley @*/ 9485d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9486d71ae5a4SJacob Faibussowitsch { 9487b5a892a1SMatthew G. Knepley PetscBool found; 9488b5a892a1SMatthew G. Knepley 9489b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94909566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 94917a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9493b5a892a1SMatthew G. Knepley } 9494b5a892a1SMatthew G. Knepley 9495cc4c1da9SBarry Smith /*@ 9496bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9497b5a892a1SMatthew G. Knepley 949820f4b53cSBarry Smith Not Collective 9499b5a892a1SMatthew G. Knepley 9500b5a892a1SMatthew G. Knepley Input Parameters: 9501bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9502b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9503b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9504b5a892a1SMatthew G. Knepley 9505b5a892a1SMatthew G. Knepley Output Parameters: 9506bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9507b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9508b5a892a1SMatthew G. Knepley 9509b5a892a1SMatthew G. Knepley Level: advanced 9510b5a892a1SMatthew G. Knepley 951173ff1848SBarry Smith Notes: 9512bb7acecfSBarry Smith An arrangement is a vertex order 9513bb7acecfSBarry Smith 951485036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9515bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9516bb7acecfSBarry Smith 9517bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9518bb7acecfSBarry Smith 951985036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9520b5a892a1SMatthew G. Knepley @*/ 9521d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9522d71ae5a4SJacob Faibussowitsch { 9523b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 952485036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9525b5a892a1SMatthew G. Knepley PetscInt o, c; 9526b5a892a1SMatthew G. Knepley 9527b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95289371c9d4SSatish Balay if (!nO) { 95299371c9d4SSatish Balay *ornt = 0; 95309371c9d4SSatish Balay *found = PETSC_TRUE; 95313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 95329371c9d4SSatish Balay } 9533b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 953485036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9535b5a892a1SMatthew G. Knepley 95369371c9d4SSatish Balay for (c = 0; c < cS; ++c) 95379371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 95389371c9d4SSatish Balay if (c == cS) { 95399371c9d4SSatish Balay *ornt = o; 95409371c9d4SSatish Balay break; 95419371c9d4SSatish Balay } 9542b5a892a1SMatthew G. Knepley } 9543b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 95443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9545b5a892a1SMatthew G. Knepley } 9546b5a892a1SMatthew G. Knepley 9547cc4c1da9SBarry Smith /*@ 9548bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9549b5a892a1SMatthew G. Knepley 955020f4b53cSBarry Smith Not Collective 9551b5a892a1SMatthew G. Knepley 9552b5a892a1SMatthew G. Knepley Input Parameters: 9553bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9554b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9555b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9556b5a892a1SMatthew G. Knepley 95572fe279fdSBarry Smith Output Parameter: 9558bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9559b5a892a1SMatthew G. Knepley 9560b5a892a1SMatthew G. Knepley Level: advanced 9561b5a892a1SMatthew G. Knepley 9562bb7acecfSBarry Smith Note: 9563bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9564bb7acecfSBarry Smith 956573ff1848SBarry Smith Developer Note: 9566bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9567bb7acecfSBarry Smith 95681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9569b5a892a1SMatthew G. Knepley @*/ 9570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9571d71ae5a4SJacob Faibussowitsch { 9572b5a892a1SMatthew G. Knepley PetscBool found; 9573b5a892a1SMatthew G. Knepley 9574b5a892a1SMatthew G. Knepley PetscFunctionBegin; 95759566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 95767a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 95773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9578b5a892a1SMatthew G. Knepley } 9579012bc364SMatthew G. Knepley 9580cc4c1da9SBarry Smith /*@ 9581012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9582012bc364SMatthew G. Knepley 958320f4b53cSBarry Smith Not Collective 9584012bc364SMatthew G. Knepley 9585012bc364SMatthew G. Knepley Input Parameters: 9586bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9587012bc364SMatthew G. Knepley - point - Coordinates of the point 9588012bc364SMatthew G. Knepley 95892fe279fdSBarry Smith Output Parameter: 9590012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9591012bc364SMatthew G. Knepley 9592012bc364SMatthew G. Knepley Level: advanced 9593012bc364SMatthew G. Knepley 95941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9595012bc364SMatthew G. Knepley @*/ 9596d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9597d71ae5a4SJacob Faibussowitsch { 9598012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9599012bc364SMatthew G. Knepley PetscInt d; 9600012bc364SMatthew G. Knepley 9601012bc364SMatthew G. Knepley PetscFunctionBegin; 9602012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9603012bc364SMatthew G. Knepley switch (ct) { 9604012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9605012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9606012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 96079371c9d4SSatish Balay if (point[d] < -1.0) { 96089371c9d4SSatish Balay *inside = PETSC_FALSE; 96099371c9d4SSatish Balay break; 96109371c9d4SSatish Balay } 9611012bc364SMatthew G. Knepley sum += point[d]; 9612012bc364SMatthew G. Knepley } 96139371c9d4SSatish Balay if (sum > PETSC_SMALL) { 96149371c9d4SSatish Balay *inside = PETSC_FALSE; 96159371c9d4SSatish Balay break; 96169371c9d4SSatish Balay } 9617012bc364SMatthew G. Knepley break; 9618012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9619012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9620012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 96219371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 96229371c9d4SSatish Balay *inside = PETSC_FALSE; 9623012bc364SMatthew G. Knepley break; 96249371c9d4SSatish Balay } 96259371c9d4SSatish Balay break; 9626d71ae5a4SJacob Faibussowitsch default: 9627d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9628012bc364SMatthew G. Knepley } 96293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9630012bc364SMatthew G. Knepley } 9631adc21957SMatthew G. Knepley 9632adc21957SMatthew G. Knepley /*@ 9633adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9634adc21957SMatthew G. Knepley 9635adc21957SMatthew G. Knepley Logically collective 9636adc21957SMatthew G. Knepley 9637adc21957SMatthew G. Knepley Input Parameters: 9638adc21957SMatthew G. Knepley + dm - The DM 9639adc21957SMatthew G. Knepley - reorder - Flag for reordering 9640adc21957SMatthew G. Knepley 9641adc21957SMatthew G. Knepley Level: intermediate 9642adc21957SMatthew G. Knepley 9643adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9644adc21957SMatthew G. Knepley @*/ 9645adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9646adc21957SMatthew G. Knepley { 9647adc21957SMatthew G. Knepley PetscFunctionBegin; 9648adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9649adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9650adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9651adc21957SMatthew G. Knepley } 9652adc21957SMatthew G. Knepley 9653adc21957SMatthew G. Knepley /*@ 9654adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9655adc21957SMatthew G. Knepley 9656adc21957SMatthew G. Knepley Not collective 9657adc21957SMatthew G. Knepley 9658adc21957SMatthew G. Knepley Input Parameter: 9659adc21957SMatthew G. Knepley . dm - The DM 9660adc21957SMatthew G. Knepley 9661adc21957SMatthew G. Knepley Output Parameter: 9662adc21957SMatthew G. Knepley . reorder - Flag for reordering 9663adc21957SMatthew G. Knepley 9664adc21957SMatthew G. Knepley Level: intermediate 9665adc21957SMatthew G. Knepley 9666adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9667adc21957SMatthew G. Knepley @*/ 9668adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9669adc21957SMatthew G. Knepley { 9670adc21957SMatthew G. Knepley PetscFunctionBegin; 9671adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9672adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9673adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9674adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9675adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9676adc21957SMatthew G. Knepley } 9677adc21957SMatthew G. Knepley 9678cc4c1da9SBarry Smith /*@ 9679adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9680adc21957SMatthew G. Knepley 9681adc21957SMatthew G. Knepley Logically collective 9682adc21957SMatthew G. Knepley 9683adc21957SMatthew G. Knepley Input Parameters: 9684adc21957SMatthew G. Knepley + dm - The DM 9685adc21957SMatthew G. Knepley - reorder - The reordering method 9686adc21957SMatthew G. Knepley 9687adc21957SMatthew G. Knepley Level: intermediate 9688adc21957SMatthew G. Knepley 9689adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9690adc21957SMatthew G. Knepley @*/ 9691adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9692adc21957SMatthew G. Knepley { 9693adc21957SMatthew G. Knepley PetscFunctionBegin; 9694adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9695adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9696adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9697adc21957SMatthew G. Knepley } 9698adc21957SMatthew G. Knepley 9699cc4c1da9SBarry Smith /*@ 9700adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9701adc21957SMatthew G. Knepley 9702adc21957SMatthew G. Knepley Not collective 9703adc21957SMatthew G. Knepley 9704adc21957SMatthew G. Knepley Input Parameter: 9705adc21957SMatthew G. Knepley . dm - The DM 9706adc21957SMatthew G. Knepley 9707adc21957SMatthew G. Knepley Output Parameter: 9708adc21957SMatthew G. Knepley . reorder - The reordering method 9709adc21957SMatthew G. Knepley 9710adc21957SMatthew G. Knepley Level: intermediate 9711adc21957SMatthew G. Knepley 9712adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9713adc21957SMatthew G. Knepley @*/ 9714adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9715adc21957SMatthew G. Knepley { 9716adc21957SMatthew G. Knepley PetscFunctionBegin; 9717adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9718adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9719adc21957SMatthew G. Knepley *reorder = NULL; 9720adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9721adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9722adc21957SMatthew G. Knepley } 9723