xref: /petsc/src/dm/interface/dm.c (revision 4758e3ce3f4cc9adc2a49a02e2f05c2a0f943969)
1d0295fc0SJunchao Zhang #include <petscvec.h>
2af0996ceSBarry Smith #include <petsc/private/dmimpl.h>      /*I      "petscdm.h"          I*/
3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I      "petscdmlabel.h"     I*/
4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I      "petscds.h"     I*/
53e922f36SToby Isaac #include <petscdmplex.h>
6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h>
7f19dbd58SToby Isaac #include <petscdmfield.h>
80c312b8eSJed Brown #include <petscsf.h>
92764a2aaSMatthew G. Knepley #include <petscds.h>
1047c6ae99SBarry Smith 
11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
12f918ec44SMatthew G. Knepley   #include <petscfeceed.h>
13f918ec44SMatthew G. Knepley #endif
14f918ec44SMatthew G. Knepley 
15732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID;
16d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID;
1742d0c57aSJames Wright PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_View, DM_AdaptInterpolator, DM_ProjectFunction;
1867a56275SMatthew G Knepley 
19ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[]          = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL};
2078e542f3SJed Brown const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "LOWER_BOUND", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "UPPER_BOUND", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType",
2178e542f3SJed Brown                                                 "DM_BC_",  NULL};
220e762ea3SJed Brown const char *const DMBlockingTypes[]          = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL};
23476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] =
24476787b7SMatthew G. Knepley   {"vertex",  "segment",      "tensor_segment", "triangle", "quadrilateral",  "tensor_quad",  "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell",
25476787b7SMatthew G. Knepley    "unknown", "unknown_cell", "unknown_face",   "invalid",  "DMPolytopeType", "DM_POLYTOPE_", NULL};
262cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL};
2760c22052SBarry Smith 
28a4121054SBarry Smith /*@
29bb7acecfSBarry Smith   DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the
300b4b7b1cSBarry Smith   algebraic solvers, time integrators, and optimization algorithms in PETSc.
31a4121054SBarry Smith 
32d083f849SBarry Smith   Collective
33a4121054SBarry Smith 
34a4121054SBarry Smith   Input Parameter:
35bb7acecfSBarry Smith . comm - The communicator for the `DM` object
36a4121054SBarry Smith 
37a4121054SBarry Smith   Output Parameter:
38bb7acecfSBarry Smith . dm - The `DM` object
39a4121054SBarry Smith 
40a4121054SBarry Smith   Level: beginner
41a4121054SBarry Smith 
42bb7acecfSBarry Smith   Notes:
43bb7acecfSBarry Smith   See `DMType` for a brief summary of available `DM`.
44bb7acecfSBarry Smith 
45bb7acecfSBarry Smith   The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an
460b4b7b1cSBarry Smith   error when you try to use the `dm`.
470b4b7b1cSBarry Smith 
480b4b7b1cSBarry Smith   `DM` is an orphan initialism or orphan acronym, the letters have no meaning and never did.
49bb7acecfSBarry Smith 
501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK`
51a4121054SBarry Smith @*/
52d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm)
53d71ae5a4SJacob Faibussowitsch {
54a4121054SBarry Smith   DM      v;
55e5e52638SMatthew G. Knepley   PetscDS ds;
56a4121054SBarry Smith 
57a4121054SBarry Smith   PetscFunctionBegin;
584f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
59377f809aSBarry Smith 
609566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
619566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView));
6262e5d2d2SJDBetteridge   ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences;
6349be4549SMatthew G. Knepley   v->setupcalled                          = PETSC_FALSE;
6449be4549SMatthew G. Knepley   v->setfromoptionscalled                 = PETSC_FALSE;
650298fd71SBarry Smith   v->ltogmap                              = NULL;
66a4ea9b21SRichard Tran Mills   v->bind_below                           = 0;
671411c6eeSJed Brown   v->bs                                   = 1;
68171400e9SBarry Smith   v->coloringtype                         = IS_COLORING_GLOBAL;
699566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sf));
709566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &v->sectionSF));
71c58f1c22SToby Isaac   v->labels                    = NULL;
7234aa8a36SMatthew G. Knepley   v->adjacency[0]              = PETSC_FALSE;
7334aa8a36SMatthew G. Knepley   v->adjacency[1]              = PETSC_TRUE;
74c58f1c22SToby Isaac   v->depthLabel                = NULL;
75ba2698f1SMatthew G. Knepley   v->celltypeLabel             = NULL;
761bb6d2a8SBarry Smith   v->localSection              = NULL;
771bb6d2a8SBarry Smith   v->globalSection             = NULL;
783b8ba7d1SJed Brown   v->defaultConstraint.section = NULL;
793b8ba7d1SJed Brown   v->defaultConstraint.mat     = NULL;
8079769bd5SJed Brown   v->defaultConstraint.bias    = NULL;
816858538eSMatthew G. Knepley   v->coordinates[0].dim        = PETSC_DEFAULT;
826858538eSMatthew G. Knepley   v->coordinates[1].dim        = PETSC_DEFAULT;
836858538eSMatthew G. Knepley   v->sparseLocalize            = PETSC_TRUE;
8496173672SStefano Zampini   v->dim                       = PETSC_DETERMINE;
859566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
8607218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL));
879566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&ds));
889566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxCreate(&v->auxData));
8914f150ffSMatthew G. Knepley   v->dmBC              = NULL;
90a8fb8f29SToby Isaac   v->coarseMesh        = NULL;
91f4d763aaSMatthew G. Knepley   v->outputSequenceNum = -1;
92cdb7a50dSMatthew G. Knepley   v->outputSequenceVal = 0.0;
939566063dSJacob Faibussowitsch   PetscCall(DMSetVecType(v, VECSTANDARD));
949566063dSJacob Faibussowitsch   PetscCall(DMSetMatType(v, MATAIJ));
954a7a4c06SLawrence Mitchell 
961411c6eeSJed Brown   *dm = v;
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
98a4121054SBarry Smith }
99a4121054SBarry Smith 
10038221697SMatthew G. Knepley /*@
101bb7acecfSBarry Smith   DMClone - Creates a `DM` object with the same topology as the original.
10238221697SMatthew G. Knepley 
103d083f849SBarry Smith   Collective
10438221697SMatthew G. Knepley 
10538221697SMatthew G. Knepley   Input Parameter:
106bb7acecfSBarry Smith . dm - The original `DM` object
10738221697SMatthew G. Knepley 
10838221697SMatthew G. Knepley   Output Parameter:
109bb7acecfSBarry Smith . newdm - The new `DM` object
11038221697SMatthew G. Knepley 
11138221697SMatthew G. Knepley   Level: beginner
11238221697SMatthew G. Knepley 
1131cb8cacdSPatrick Sanan   Notes:
114bb7acecfSBarry Smith   For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example,
115bb7acecfSBarry Smith   `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not
116bb7acecfSBarry Smith   share the `PetscSection` of the original `DM`.
1171bb6d2a8SBarry Smith 
118bb7acecfSBarry Smith   The clone is considered set up if the original has been set up.
11989706ed2SPatrick Sanan 
120bb7acecfSBarry Smith   Use `DMConvert()` for a general way to create new `DM` from a given `DM`
121bb7acecfSBarry Smith 
12260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()`
12338221697SMatthew G. Knepley @*/
124d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm)
125d71ae5a4SJacob Faibussowitsch {
12638221697SMatthew G. Knepley   PetscSF              sf;
12738221697SMatthew G. Knepley   Vec                  coords;
12838221697SMatthew G. Knepley   void                *ctx;
129ec196627SMatthew G. Knepley   MatOrderingType      otype;
130ec196627SMatthew G. Knepley   DMReorderDefaultFlag flg;
1316858538eSMatthew G. Knepley   PetscInt             dim, cdim, i;
13238221697SMatthew G. Knepley 
13338221697SMatthew G. Knepley   PetscFunctionBegin;
13438221697SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1354f572ea9SToby Isaac   PetscAssertPointer(newdm, 2);
1369566063dSJacob Faibussowitsch   PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm));
1379566063dSJacob Faibussowitsch   PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL));
138ddf8437dSMatthew G. Knepley   (*newdm)->leveldown     = dm->leveldown;
139ddf8437dSMatthew G. Knepley   (*newdm)->levelup       = dm->levelup;
140c8a6034eSMark   (*newdm)->prealloc_only = dm->prealloc_only;
141fc214432SJed Brown   (*newdm)->prealloc_skip = dm->prealloc_skip;
1429566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->vectype));
1439566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype));
1449566063dSJacob Faibussowitsch   PetscCall(PetscFree((*newdm)->mattype));
1459566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype));
1469566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
1479566063dSJacob Faibussowitsch   PetscCall(DMSetDimension(*newdm, dim));
148dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, clone, newdm);
1493f22bcbcSToby Isaac   (*newdm)->setupcalled = dm->setupcalled;
1509566063dSJacob Faibussowitsch   PetscCall(DMGetPointSF(dm, &sf));
1519566063dSJacob Faibussowitsch   PetscCall(DMSetPointSF(*newdm, sf));
1529566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(dm, &ctx));
1539566063dSJacob Faibussowitsch   PetscCall(DMSetApplicationContext(*newdm, ctx));
154ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetDefault(dm, &flg));
155ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetDefault(*newdm, flg));
156ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionGetType(dm, &otype));
157ec196627SMatthew G. Knepley   PetscCall(DMReorderSectionSetType(*newdm, otype));
1586858538eSMatthew G. Knepley   for (i = 0; i < 2; ++i) {
1596858538eSMatthew G. Knepley     if (dm->coordinates[i].dm) {
160be4c1c3eSMatthew G. Knepley       DM           ncdm;
161be4c1c3eSMatthew G. Knepley       PetscSection cs;
1625a0206caSToby Isaac       PetscInt     pEnd = -1, pEndMax = -1;
163be4c1c3eSMatthew G. Knepley 
1646858538eSMatthew G. Knepley       PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs));
1659566063dSJacob Faibussowitsch       if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd));
166462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
1675a0206caSToby Isaac       if (pEndMax >= 0) {
1686858538eSMatthew G. Knepley         PetscCall(DMClone(dm->coordinates[i].dm, &ncdm));
1696858538eSMatthew G. Knepley         PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm));
1709566063dSJacob Faibussowitsch         PetscCall(DMSetLocalSection(ncdm, cs));
1715e50ca95SJames Wright         if (dm->coordinates[i].dm->periodic.setup) {
1725e50ca95SJames Wright           ncdm->periodic.setup = dm->coordinates[i].dm->periodic.setup;
1735e50ca95SJames Wright           PetscCall(ncdm->periodic.setup(ncdm));
1745e50ca95SJames Wright         }
1756858538eSMatthew G. Knepley         if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm));
1766858538eSMatthew G. Knepley         else PetscCall(DMSetCoordinateDM(*newdm, ncdm));
1779566063dSJacob Faibussowitsch         PetscCall(DMDestroy(&ncdm));
178be4c1c3eSMatthew G. Knepley       }
179be4c1c3eSMatthew G. Knepley     }
1806858538eSMatthew G. Knepley   }
1819566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
1829566063dSJacob Faibussowitsch   PetscCall(DMSetCoordinateDim(*newdm, cdim));
1839566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinatesLocal(dm, &coords));
18438221697SMatthew G. Knepley   if (coords) {
1859566063dSJacob Faibussowitsch     PetscCall(DMSetCoordinatesLocal(*newdm, coords));
18638221697SMatthew G. Knepley   } else {
1879566063dSJacob Faibussowitsch     PetscCall(DMGetCoordinates(dm, &coords));
1889566063dSJacob Faibussowitsch     if (coords) PetscCall(DMSetCoordinates(*newdm, coords));
18938221697SMatthew G. Knepley   }
1906858538eSMatthew G. Knepley   PetscCall(DMGetCellCoordinatesLocal(dm, &coords));
1916858538eSMatthew G. Knepley   if (coords) {
1926858538eSMatthew G. Knepley     PetscCall(DMSetCellCoordinatesLocal(*newdm, coords));
1936858538eSMatthew G. Knepley   } else {
1946858538eSMatthew G. Knepley     PetscCall(DMGetCellCoordinates(dm, &coords));
1956858538eSMatthew G. Knepley     if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords));
1966858538eSMatthew G. Knepley   }
19790b157c4SStefano Zampini   {
1984fb89dddSMatthew G. Knepley     const PetscReal *maxCell, *Lstart, *L;
1996858538eSMatthew G. Knepley 
2004fb89dddSMatthew G. Knepley     PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
2014fb89dddSMatthew G. Knepley     PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L));
202c6b900c6SMatthew G. Knepley   }
20334aa8a36SMatthew G. Knepley   {
20434aa8a36SMatthew G. Knepley     PetscBool useCone, useClosure;
20534aa8a36SMatthew G. Knepley 
2069566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure));
2079566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure));
20834aa8a36SMatthew G. Knepley   }
2093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21038221697SMatthew G. Knepley }
21138221697SMatthew G. Knepley 
2125d83a8b1SBarry Smith /*@
2135d83a8b1SBarry Smith   DMSetVecType - Sets the type of vector to be created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
2149a42bb27SBarry Smith 
21520f4b53cSBarry Smith   Logically Collective
2169a42bb27SBarry Smith 
217147403d9SBarry Smith   Input Parameters:
21832546409SMatthew G. Knepley + dm    - initial distributed array
219bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL`
2209a42bb27SBarry Smith 
22120f4b53cSBarry Smith   Options Database Key:
222147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create
2239a42bb27SBarry Smith 
2249a42bb27SBarry Smith   Level: intermediate
2259a42bb27SBarry Smith 
22660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`,
227bb7acecfSBarry Smith           `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`
2289a42bb27SBarry Smith @*/
22932546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype)
230d71ae5a4SJacob Faibussowitsch {
23132546409SMatthew G. Knepley   char *tmp;
23232546409SMatthew G. Knepley 
2339a42bb27SBarry Smith   PetscFunctionBegin;
23432546409SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23532546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
23632546409SMatthew G. Knepley   tmp = (char *)dm->vectype;
23732546409SMatthew G. Knepley   PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype));
23832546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
2393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2409a42bb27SBarry Smith }
2419a42bb27SBarry Smith 
2425d83a8b1SBarry Smith /*@
243bb7acecfSBarry Smith   DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()`
244c0dedaeaSBarry Smith 
24520f4b53cSBarry Smith   Logically Collective
246c0dedaeaSBarry Smith 
247c0dedaeaSBarry Smith   Input Parameter:
248c0dedaeaSBarry Smith . da - initial distributed array
249c0dedaeaSBarry Smith 
250c0dedaeaSBarry Smith   Output Parameter:
251c0dedaeaSBarry Smith . ctype - the vector type
252c0dedaeaSBarry Smith 
253c0dedaeaSBarry Smith   Level: intermediate
254c0dedaeaSBarry Smith 
25560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()`
256c0dedaeaSBarry Smith @*/
257d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype)
258d71ae5a4SJacob Faibussowitsch {
259c0dedaeaSBarry Smith   PetscFunctionBegin;
260c0dedaeaSBarry Smith   PetscValidHeaderSpecific(da, DM_CLASSID, 1);
261c0dedaeaSBarry Smith   *ctype = da->vectype;
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
263c0dedaeaSBarry Smith }
264c0dedaeaSBarry Smith 
2655f1ad066SMatthew G Knepley /*@
266bb7acecfSBarry Smith   VecGetDM - Gets the `DM` defining the data layout of the vector
2675f1ad066SMatthew G Knepley 
26820f4b53cSBarry Smith   Not Collective
2695f1ad066SMatthew G Knepley 
2705f1ad066SMatthew G Knepley   Input Parameter:
271bb7acecfSBarry Smith . v - The `Vec`
2725f1ad066SMatthew G Knepley 
2735f1ad066SMatthew G Knepley   Output Parameter:
274bb7acecfSBarry Smith . dm - The `DM`
2755f1ad066SMatthew G Knepley 
2765f1ad066SMatthew G Knepley   Level: intermediate
2775f1ad066SMatthew G Knepley 
278bb7acecfSBarry Smith   Note:
279bb7acecfSBarry Smith   A `Vec` may not have a `DM` associated with it.
280bb7acecfSBarry Smith 
2811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
2825f1ad066SMatthew G Knepley @*/
283d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm)
284d71ae5a4SJacob Faibussowitsch {
2855f1ad066SMatthew G Knepley   PetscFunctionBegin;
2865f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
2874f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
2889566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm));
2893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2905f1ad066SMatthew G Knepley }
2915f1ad066SMatthew G Knepley 
2925f1ad066SMatthew G Knepley /*@
293bb7acecfSBarry Smith   VecSetDM - Sets the `DM` defining the data layout of the vector.
2945f1ad066SMatthew G Knepley 
29520f4b53cSBarry Smith   Not Collective
2965f1ad066SMatthew G Knepley 
2975f1ad066SMatthew G Knepley   Input Parameters:
298bb7acecfSBarry Smith + v  - The `Vec`
299bb7acecfSBarry Smith - dm - The `DM`
3005f1ad066SMatthew G Knepley 
30120f4b53cSBarry Smith   Level: developer
30220f4b53cSBarry Smith 
30373ff1848SBarry Smith   Notes:
304bb7acecfSBarry Smith   This is rarely used, generally one uses `DMGetLocalVector()` or  `DMGetGlobalVector()` to create a vector associated with a given `DM`
305d9805387SMatthew G. Knepley 
306bb7acecfSBarry Smith   This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member.
307bb7acecfSBarry Smith 
3081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()`
3095f1ad066SMatthew G Knepley @*/
310d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm)
311d71ae5a4SJacob Faibussowitsch {
3125f1ad066SMatthew G Knepley   PetscFunctionBegin;
3135f1ad066SMatthew G Knepley   PetscValidHeaderSpecific(v, VEC_CLASSID, 1);
314d7f50e27SLisandro Dalcin   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
3159566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm));
3163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3175f1ad066SMatthew G Knepley }
3185f1ad066SMatthew G Knepley 
319cc4c1da9SBarry Smith /*@
320bb7acecfSBarry Smith   DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
3218f1509bcSBarry Smith 
32220f4b53cSBarry Smith   Logically Collective
3238f1509bcSBarry Smith 
3248f1509bcSBarry Smith   Input Parameters:
325bb7acecfSBarry Smith + dm    - the `DM` context
3268f1509bcSBarry Smith - ctype - the matrix type
3278f1509bcSBarry Smith 
32820f4b53cSBarry Smith   Options Database Key:
3298f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3308f1509bcSBarry Smith 
3318f1509bcSBarry Smith   Level: intermediate
3328f1509bcSBarry Smith 
3331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
334bb7acecfSBarry Smith           `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3358f1509bcSBarry Smith @*/
336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype)
337d71ae5a4SJacob Faibussowitsch {
3388f1509bcSBarry Smith   PetscFunctionBegin;
3398f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3408f1509bcSBarry Smith   dm->coloringtype = ctype;
3413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3428f1509bcSBarry Smith }
3438f1509bcSBarry Smith 
344cc4c1da9SBarry Smith /*@
345bb7acecfSBarry Smith   DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM`
346521d9a4cSLisandro Dalcin 
34720f4b53cSBarry Smith   Logically Collective
348521d9a4cSLisandro Dalcin 
349521d9a4cSLisandro Dalcin   Input Parameter:
350bb7acecfSBarry Smith . dm - the `DM` context
3518f1509bcSBarry Smith 
3528f1509bcSBarry Smith   Output Parameter:
3538f1509bcSBarry Smith . ctype - the matrix type
3548f1509bcSBarry Smith 
35520f4b53cSBarry Smith   Options Database Key:
3568f1509bcSBarry Smith . -dm_is_coloring_type - global or local
3578f1509bcSBarry Smith 
3588f1509bcSBarry Smith   Level: intermediate
3598f1509bcSBarry Smith 
3601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`,
36142747ad1SJacob Faibussowitsch           `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL`
3628f1509bcSBarry Smith @*/
363d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype)
364d71ae5a4SJacob Faibussowitsch {
3658f1509bcSBarry Smith   PetscFunctionBegin;
3668f1509bcSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3678f1509bcSBarry Smith   *ctype = dm->coloringtype;
3683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3698f1509bcSBarry Smith }
3708f1509bcSBarry Smith 
371cc4c1da9SBarry Smith /*@
372bb7acecfSBarry Smith   DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()`
3738f1509bcSBarry Smith 
37420f4b53cSBarry Smith   Logically Collective
3758f1509bcSBarry Smith 
3768f1509bcSBarry Smith   Input Parameters:
377bb7acecfSBarry Smith + dm    - the `DM` context
378bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ`
379521d9a4cSLisandro Dalcin 
38020f4b53cSBarry Smith   Options Database Key:
381bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij
382521d9a4cSLisandro Dalcin 
383521d9a4cSLisandro Dalcin   Level: intermediate
384521d9a4cSLisandro Dalcin 
38542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()`
386521d9a4cSLisandro Dalcin @*/
387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype)
388d71ae5a4SJacob Faibussowitsch {
38932546409SMatthew G. Knepley   char *tmp;
39032546409SMatthew G. Knepley 
391521d9a4cSLisandro Dalcin   PetscFunctionBegin;
392521d9a4cSLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39332546409SMatthew G. Knepley   PetscAssertPointer(ctype, 2);
39432546409SMatthew G. Knepley   tmp = (char *)dm->mattype;
3959566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype));
39632546409SMatthew G. Knepley   PetscCall(PetscFree(tmp));
3973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
398521d9a4cSLisandro Dalcin }
399521d9a4cSLisandro Dalcin 
400cc4c1da9SBarry Smith /*@
40120f4b53cSBarry Smith   DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()`
402c0dedaeaSBarry Smith 
40320f4b53cSBarry Smith   Logically Collective
404c0dedaeaSBarry Smith 
405c0dedaeaSBarry Smith   Input Parameter:
406bb7acecfSBarry Smith . dm - the `DM` context
407c0dedaeaSBarry Smith 
408c0dedaeaSBarry Smith   Output Parameter:
409c0dedaeaSBarry Smith . ctype - the matrix type
410c0dedaeaSBarry Smith 
411c0dedaeaSBarry Smith   Level: intermediate
412c0dedaeaSBarry Smith 
41342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`
414c0dedaeaSBarry Smith @*/
415d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype)
416d71ae5a4SJacob Faibussowitsch {
417c0dedaeaSBarry Smith   PetscFunctionBegin;
418c0dedaeaSBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
419c0dedaeaSBarry Smith   *ctype = dm->mattype;
4203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
421c0dedaeaSBarry Smith }
422c0dedaeaSBarry Smith 
423c688c046SMatthew G Knepley /*@
424bb7acecfSBarry Smith   MatGetDM - Gets the `DM` defining the data layout of the matrix
425c688c046SMatthew G Knepley 
42620f4b53cSBarry Smith   Not Collective
427c688c046SMatthew G Knepley 
428c688c046SMatthew G Knepley   Input Parameter:
429bb7acecfSBarry Smith . A - The `Mat`
430c688c046SMatthew G Knepley 
431c688c046SMatthew G Knepley   Output Parameter:
432bb7acecfSBarry Smith . dm - The `DM`
433c688c046SMatthew G Knepley 
434c688c046SMatthew G Knepley   Level: intermediate
435c688c046SMatthew G Knepley 
436bb7acecfSBarry Smith   Note:
437bb7acecfSBarry Smith   A matrix may not have a `DM` associated with it
438bb7acecfSBarry Smith 
43973ff1848SBarry Smith   Developer Note:
440bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation
4418f1509bcSBarry Smith 
4421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
443c688c046SMatthew G Knepley @*/
444d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm)
445d71ae5a4SJacob Faibussowitsch {
446c688c046SMatthew G Knepley   PetscFunctionBegin;
447c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4484f572ea9SToby Isaac   PetscAssertPointer(dm, 2);
4499566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm));
4503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
451c688c046SMatthew G Knepley }
452c688c046SMatthew G Knepley 
453c688c046SMatthew G Knepley /*@
454bb7acecfSBarry Smith   MatSetDM - Sets the `DM` defining the data layout of the matrix
455c688c046SMatthew G Knepley 
45620f4b53cSBarry Smith   Not Collective
457c688c046SMatthew G Knepley 
458c688c046SMatthew G Knepley   Input Parameters:
45920f4b53cSBarry Smith + A  - The `Mat`
46020f4b53cSBarry Smith - dm - The `DM`
461c688c046SMatthew G Knepley 
462bb7acecfSBarry Smith   Level: developer
463c688c046SMatthew G Knepley 
464bb7acecfSBarry Smith   Note:
465bb7acecfSBarry Smith   This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM`
466bb7acecfSBarry Smith 
46773ff1848SBarry Smith   Developer Note:
468bb7acecfSBarry Smith   Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with
469bb7acecfSBarry Smith   the `Mat` through a `PetscObjectCompose()` operation
4708f1509bcSBarry Smith 
4711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()`
472c688c046SMatthew G Knepley @*/
473d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm)
474d71ae5a4SJacob Faibussowitsch {
475c688c046SMatthew G Knepley   PetscFunctionBegin;
476c688c046SMatthew G Knepley   PetscValidHeaderSpecific(A, MAT_CLASSID, 1);
4778865f1eaSKarl Rupp   if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2);
4789566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm));
4793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480c688c046SMatthew G Knepley }
481c688c046SMatthew G Knepley 
482cc4c1da9SBarry Smith /*@
483bb7acecfSBarry Smith   DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database
4849a42bb27SBarry Smith 
48520f4b53cSBarry Smith   Logically Collective
4869a42bb27SBarry Smith 
487d8d19677SJose E. Roman   Input Parameters:
48860225df5SJacob Faibussowitsch + dm     - the `DM` context
489bb7acecfSBarry Smith - prefix - the prefix to prepend
4909a42bb27SBarry Smith 
49120f4b53cSBarry Smith   Level: advanced
49220f4b53cSBarry Smith 
49320f4b53cSBarry Smith   Note:
4949a42bb27SBarry Smith   A hyphen (-) must NOT be given at the beginning of the prefix name.
4959a42bb27SBarry Smith   The first character of all runtime options is AUTOMATICALLY the hyphen.
4969a42bb27SBarry Smith 
4971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()`
4989a42bb27SBarry Smith @*/
499d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[])
500d71ae5a4SJacob Faibussowitsch {
5019a42bb27SBarry Smith   PetscFunctionBegin;
5029a42bb27SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5039566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix));
5041baa6e33SBarry Smith   if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix));
5051baa6e33SBarry Smith   if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix));
5063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5079a42bb27SBarry Smith }
5089a42bb27SBarry Smith 
509cc4c1da9SBarry Smith /*@
510da81f932SPierre Jolivet   DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for
511bb7acecfSBarry Smith   `DM` options in the options database.
51231697293SDave May 
51320f4b53cSBarry Smith   Logically Collective
51431697293SDave May 
51531697293SDave May   Input Parameters:
516bb7acecfSBarry Smith + dm     - the `DM` context
517bb7acecfSBarry Smith - prefix - the string to append to the current prefix
51831697293SDave May 
51920f4b53cSBarry Smith   Level: advanced
52020f4b53cSBarry Smith 
52120f4b53cSBarry Smith   Note:
522bb7acecfSBarry Smith   If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called.
52331697293SDave May   A hyphen (-) must NOT be given at the beginning of the prefix name.
52431697293SDave May   The first character of all runtime options is AUTOMATICALLY the hyphen.
52531697293SDave May 
5261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()`
52731697293SDave May @*/
528d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[])
529d71ae5a4SJacob Faibussowitsch {
53031697293SDave May   PetscFunctionBegin;
53131697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5329566063dSJacob Faibussowitsch   PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix));
5333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
53431697293SDave May }
53531697293SDave May 
536cc4c1da9SBarry Smith /*@
53731697293SDave May   DMGetOptionsPrefix - Gets the prefix used for searching for all
538bb7acecfSBarry Smith   DM options in the options database.
53931697293SDave May 
54031697293SDave May   Not Collective
54131697293SDave May 
5422fe279fdSBarry Smith   Input Parameter:
543bb7acecfSBarry Smith . dm - the `DM` context
54431697293SDave May 
5452fe279fdSBarry Smith   Output Parameter:
54631697293SDave May . prefix - pointer to the prefix string used is returned
54731697293SDave May 
54831697293SDave May   Level: advanced
54931697293SDave May 
5501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()`
55131697293SDave May @*/
552d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[])
553d71ae5a4SJacob Faibussowitsch {
55431697293SDave May   PetscFunctionBegin;
55531697293SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix));
5573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55831697293SDave May }
55931697293SDave May 
56062e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct)
561d71ae5a4SJacob Faibussowitsch {
5626eb26441SStefano Zampini   PetscInt refct = ((PetscObject)dm)->refct;
56388bdff64SToby Isaac 
56488bdff64SToby Isaac   PetscFunctionBegin;
565aab5bcd8SJed Brown   *ncrefct = 0;
56688bdff64SToby Isaac   if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) {
56788bdff64SToby Isaac     refct--;
56888bdff64SToby Isaac     if (recurseCoarse) {
56988bdff64SToby Isaac       PetscInt coarseCount;
57088bdff64SToby Isaac 
57162e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount));
57288bdff64SToby Isaac       refct += coarseCount;
57388bdff64SToby Isaac     }
57488bdff64SToby Isaac   }
57588bdff64SToby Isaac   if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) {
57688bdff64SToby Isaac     refct--;
57788bdff64SToby Isaac     if (recurseFine) {
57888bdff64SToby Isaac       PetscInt fineCount;
57988bdff64SToby Isaac 
58062e5d2d2SJDBetteridge       PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount));
58188bdff64SToby Isaac       refct += fineCount;
58288bdff64SToby Isaac     }
58388bdff64SToby Isaac   }
58488bdff64SToby Isaac   *ncrefct = refct;
5853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58688bdff64SToby Isaac }
58788bdff64SToby Isaac 
58862e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */
58962e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct)
59062e5d2d2SJDBetteridge {
59162e5d2d2SJDBetteridge   PetscFunctionBegin;
59262e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct));
5933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
59462e5d2d2SJDBetteridge }
59562e5d2d2SJDBetteridge 
596d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm)
597d71ae5a4SJacob Faibussowitsch {
5985d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
599354557abSToby Isaac 
600354557abSToby Isaac   PetscFunctionBegin;
601354557abSToby Isaac   /* destroy the labels */
602354557abSToby Isaac   while (next) {
603354557abSToby Isaac     DMLabelLink tmp = next->next;
604354557abSToby Isaac 
6055d80c0bfSVaclav Hapla     if (next->label == dm->depthLabel) dm->depthLabel = NULL;
606ba2698f1SMatthew G. Knepley     if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL;
6079566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&next->label));
6089566063dSJacob Faibussowitsch     PetscCall(PetscFree(next));
609354557abSToby Isaac     next = tmp;
610354557abSToby Isaac   }
6115d80c0bfSVaclav Hapla   dm->labels = NULL;
6123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
613354557abSToby Isaac }
614354557abSToby Isaac 
61566976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c)
616d71ae5a4SJacob Faibussowitsch {
6176858538eSMatthew G. Knepley   PetscFunctionBegin;
6186858538eSMatthew G. Knepley   c->dim = PETSC_DEFAULT;
6196858538eSMatthew G. Knepley   PetscCall(DMDestroy(&c->dm));
6206858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->x));
6216858538eSMatthew G. Knepley   PetscCall(VecDestroy(&c->xl));
6226858538eSMatthew G. Knepley   PetscCall(DMFieldDestroy(&c->field));
6233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6246858538eSMatthew G. Knepley }
6256858538eSMatthew G. Knepley 
6260764c050SBarry Smith /*@
627bb7acecfSBarry Smith   DMDestroy - Destroys a `DM`.
62847c6ae99SBarry Smith 
62920f4b53cSBarry Smith   Collective
63047c6ae99SBarry Smith 
63147c6ae99SBarry Smith   Input Parameter:
632bb7acecfSBarry Smith . dm - the `DM` object to destroy
63347c6ae99SBarry Smith 
63447c6ae99SBarry Smith   Level: developer
63547c6ae99SBarry Smith 
6361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
63747c6ae99SBarry Smith @*/
638d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm)
639d71ae5a4SJacob Faibussowitsch {
6406eb26441SStefano Zampini   PetscInt cnt;
64147c6ae99SBarry Smith 
64247c6ae99SBarry Smith   PetscFunctionBegin;
6433ba16761SJacob Faibussowitsch   if (!*dm) PetscFunctionReturn(PETSC_SUCCESS);
644f4f49eeaSPierre Jolivet   PetscValidHeaderSpecific(*dm, DM_CLASSID, 1);
64587e657c6SBarry Smith 
64688bdff64SToby Isaac   /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */
64762e5d2d2SJDBetteridge   PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt));
648f4f49eeaSPierre Jolivet   --((PetscObject)*dm)->refct;
6499371c9d4SSatish Balay   if (--cnt > 0) {
6509371c9d4SSatish Balay     *dm = NULL;
6513ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6529371c9d4SSatish Balay   }
653f4f49eeaSPierre Jolivet   if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS);
654f4f49eeaSPierre Jolivet   ((PetscObject)*dm)->refct = 0;
6556eb26441SStefano Zampini 
6569566063dSJacob Faibussowitsch   PetscCall(DMClearGlobalVectors(*dm));
6579566063dSJacob Faibussowitsch   PetscCall(DMClearLocalVectors(*dm));
658974ca4ecSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(*dm));
659974ca4ecSStefano Zampini   PetscCall(DMClearNamedLocalVectors(*dm));
6602348bcf4SPeter Brune 
661b17ce1afSJed Brown   /* Destroy the list of hooks */
662c833c3b5SJed Brown   {
663c833c3b5SJed Brown     DMCoarsenHookLink link, next;
664b17ce1afSJed Brown     for (link = (*dm)->coarsenhook; link; link = next) {
665b17ce1afSJed Brown       next = link->next;
6669566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
667b17ce1afSJed Brown     }
6680298fd71SBarry Smith     (*dm)->coarsenhook = NULL;
669c833c3b5SJed Brown   }
670c833c3b5SJed Brown   {
671c833c3b5SJed Brown     DMRefineHookLink link, next;
672c833c3b5SJed Brown     for (link = (*dm)->refinehook; link; link = next) {
673c833c3b5SJed Brown       next = link->next;
6749566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
675c833c3b5SJed Brown     }
6760298fd71SBarry Smith     (*dm)->refinehook = NULL;
677c833c3b5SJed Brown   }
678be081cd6SPeter Brune   {
679be081cd6SPeter Brune     DMSubDomainHookLink link, next;
680be081cd6SPeter Brune     for (link = (*dm)->subdomainhook; link; link = next) {
681be081cd6SPeter Brune       next = link->next;
6829566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
683be081cd6SPeter Brune     }
6840298fd71SBarry Smith     (*dm)->subdomainhook = NULL;
685be081cd6SPeter Brune   }
686baf369e7SPeter Brune   {
687baf369e7SPeter Brune     DMGlobalToLocalHookLink link, next;
688baf369e7SPeter Brune     for (link = (*dm)->gtolhook; link; link = next) {
689baf369e7SPeter Brune       next = link->next;
6909566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
691baf369e7SPeter Brune     }
6920298fd71SBarry Smith     (*dm)->gtolhook = NULL;
693baf369e7SPeter Brune   }
694d4d07f1eSToby Isaac   {
695d4d07f1eSToby Isaac     DMLocalToGlobalHookLink link, next;
696d4d07f1eSToby Isaac     for (link = (*dm)->ltoghook; link; link = next) {
697d4d07f1eSToby Isaac       next = link->next;
6989566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
699d4d07f1eSToby Isaac     }
700d4d07f1eSToby Isaac     (*dm)->ltoghook = NULL;
701d4d07f1eSToby Isaac   }
702aa1993deSMatthew G Knepley   /* Destroy the work arrays */
703aa1993deSMatthew G Knepley   {
704aa1993deSMatthew G Knepley     DMWorkLink link, next;
705835f2295SStefano Zampini     PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (*dm)->workout->mem);
706aa1993deSMatthew G Knepley     for (link = (*dm)->workin; link; link = next) {
707aa1993deSMatthew G Knepley       next = link->next;
7089566063dSJacob Faibussowitsch       PetscCall(PetscFree(link->mem));
7099566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
710aa1993deSMatthew G Knepley     }
7110298fd71SBarry Smith     (*dm)->workin = NULL;
712aa1993deSMatthew G Knepley   }
713c58f1c22SToby Isaac   /* destroy the labels */
7149566063dSJacob Faibussowitsch   PetscCall(DMDestroyLabelLinkList_Internal(*dm));
715f4cdcedcSVaclav Hapla   /* destroy the fields */
7169566063dSJacob Faibussowitsch   PetscCall(DMClearFields(*dm));
717f4cdcedcSVaclav Hapla   /* destroy the boundaries */
718e6f8dbb6SToby Isaac   {
719e6f8dbb6SToby Isaac     DMBoundary next = (*dm)->boundary;
720e6f8dbb6SToby Isaac     while (next) {
721e6f8dbb6SToby Isaac       DMBoundary b = next;
722e6f8dbb6SToby Isaac 
723e6f8dbb6SToby Isaac       next = b->next;
7249566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
725e6f8dbb6SToby Isaac     }
726e6f8dbb6SToby Isaac   }
727b17ce1afSJed Brown 
7289566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmksp));
7299566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmsnes));
7309566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&(*dm)->dmts));
73152536dc3SBarry Smith 
73248a46eb9SPierre Jolivet   if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx));
7339566063dSJacob Faibussowitsch   PetscCall(MatFDColoringDestroy(&(*dm)->fd));
7349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap));
7359566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->vectype));
7369566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->mattype));
73788ed4aceSMatthew G Knepley 
7389566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->localSection));
7399566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->globalSection));
740adc21957SMatthew G. Knepley   PetscCall(PetscFree((*dm)->reorderSectionType));
7419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&(*dm)->map));
7429566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section));
7439566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat));
7449566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sf));
7459566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*dm)->sectionSF));
74648a46eb9SPierre Jolivet   if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural));
7479566063dSJacob Faibussowitsch   PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration));
748e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(*dm));
7499566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData));
75048a46eb9SPierre Jolivet   if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL));
7516eb26441SStefano Zampini 
7529566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->coarseMesh));
75348a46eb9SPierre Jolivet   if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL));
7549566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->fineMesh));
7554fb89dddSMatthew G. Knepley   PetscCall(PetscFree((*dm)->Lstart));
7569566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->L));
7579566063dSJacob Faibussowitsch   PetscCall(PetscFree((*dm)->maxCell));
758*4758e3ceSMatthew G. Knepley   PetscCall(PetscFree2((*dm)->nullspaceConstructors, (*dm)->nearnullspaceConstructors));
7596858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0]));
7606858538eSMatthew G. Knepley   PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1]));
7619566063dSJacob Faibussowitsch   if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx));
7629566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->transformDM));
7639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&(*dm)->transform));
764ddedc8f6SJames Wright   for (PetscInt i = 0; i < (*dm)->periodic.num_affines; i++) {
765ddedc8f6SJames Wright     PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local[i]));
766ddedc8f6SJames Wright     PetscCall(VecDestroy(&(*dm)->periodic.affine[i]));
767ddedc8f6SJames Wright   }
768ddedc8f6SJames Wright   if ((*dm)->periodic.num_affines > 0) PetscCall(PetscFree2((*dm)->periodic.affine_to_local, (*dm)->periodic.affine));
7696636e97aSMatthew G Knepley 
7709566063dSJacob Faibussowitsch   PetscCall(DMClearDS(*dm));
7719566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&(*dm)->dmBC));
772e04113cfSBarry Smith   /* if memory was published with SAWs then destroy it */
7739566063dSJacob Faibussowitsch   PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm));
774732e2eb9SMatthew G Knepley 
775213acdd3SPierre Jolivet   PetscTryTypeMethod(*dm, destroy);
7769566063dSJacob Faibussowitsch   PetscCall(DMMonitorCancel(*dm));
777d2b2dc1eSMatthew G. Knepley   PetscCall(DMCeedDestroy(&(*dm)->dmceed));
778f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
7799566063dSJacob Faibussowitsch   PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict));
7809566063dSJacob Faibussowitsch   PetscCallCEED(CeedDestroy(&(*dm)->ceed));
781f918ec44SMatthew G. Knepley #endif
782435a35e8SMatthew G Knepley   /* We do not destroy (*dm)->data here so that we can reference count backend objects */
7839566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(dm));
7843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78547c6ae99SBarry Smith }
78647c6ae99SBarry Smith 
787d7bf68aeSBarry Smith /*@
788bb7acecfSBarry Smith   DMSetUp - sets up the data structures inside a `DM` object
789d7bf68aeSBarry Smith 
79020f4b53cSBarry Smith   Collective
791d7bf68aeSBarry Smith 
792d7bf68aeSBarry Smith   Input Parameter:
793bb7acecfSBarry Smith . dm - the `DM` object to setup
794d7bf68aeSBarry Smith 
795bb7acecfSBarry Smith   Level: intermediate
796d7bf68aeSBarry Smith 
797bb7acecfSBarry Smith   Note:
798bb7acecfSBarry Smith   This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM`
799bb7acecfSBarry Smith 
8001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
801d7bf68aeSBarry Smith @*/
802d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm)
803d71ae5a4SJacob Faibussowitsch {
804d7bf68aeSBarry Smith   PetscFunctionBegin;
805171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8063ba16761SJacob Faibussowitsch   if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
807dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setup);
8088387afaaSJed Brown   dm->setupcalled = PETSC_TRUE;
8093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
810d7bf68aeSBarry Smith }
811d7bf68aeSBarry Smith 
812d7bf68aeSBarry Smith /*@
813bb7acecfSBarry Smith   DMSetFromOptions - sets parameters in a `DM` from the options database
814d7bf68aeSBarry Smith 
81520f4b53cSBarry Smith   Collective
816d7bf68aeSBarry Smith 
817d7bf68aeSBarry Smith   Input Parameter:
818bb7acecfSBarry Smith . dm - the `DM` object to set options for
819d7bf68aeSBarry Smith 
82020f4b53cSBarry Smith   Options Database Keys:
821bb7acecfSBarry Smith + -dm_preallocate_only                               - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
822bb7acecfSBarry Smith . -dm_vec_type <type>                                - type of vector to create inside `DM`
823bb7acecfSBarry Smith . -dm_mat_type <type>                                - type of matrix to create inside `DM`
824a4ea9b21SRichard Tran Mills . -dm_is_coloring_type                               - <global or local>
82520f4b53cSBarry Smith . -dm_bind_below <n>                                 - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA`
82622d6dc08SStefano Zampini . -dm_plex_option_phases <ph0_, ph1_, ...>           - List of prefixes for option processing phases
82720f4b53cSBarry Smith . -dm_plex_filename <str>                            - File containing a mesh
8289318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str>                   - File containing a mesh boundary
829cd7e8a5eSksagiyam . -dm_plex_name <str>                                - Name of the mesh in the file
8305dca41c3SJed Brown . -dm_plex_shape <shape>                             - The domain shape, such as `BOX`, `SPHERE`, etc.
8319318fe57SMatthew G. Knepley . -dm_plex_cell <ct>                                 - Cell shape
8329318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool>              - Use a reference cell domain
8339318fe57SMatthew G. Knepley . -dm_plex_dim <dim>                                 - Set the topological dimension
834bb7acecfSBarry Smith . -dm_plex_simplex <bool>                            - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements
835bb7acecfSBarry Smith . -dm_plex_interpolate <bool>                        - `PETSC_TRUE` turns on topological interpolation (creating edges and faces)
836b9da1bb3SMatthew G. Knepley . -dm_plex_orient <bool>                             - `PETSC_TRUE` turns on topological orientation (flipping edges and faces)
8379318fe57SMatthew G. Knepley . -dm_plex_scale <sc>                                - Scale factor for mesh coordinates
838be664eb1SMatthew G. Knepley . -dm_coord_remap <bool>                             - Map coordinates using a function
839ac9d17c7SMatthew G. Knepley . -dm_plex_coordinate_dim <dim>                      - Change the coordinate dimension of a mesh (usually given with cdm_ prefix)
840be664eb1SMatthew G. Knepley . -dm_coord_map <mapname>                            - Select a builtin coordinate map
841be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...>                - Set coordinate mapping parameters
8429318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p>                         - Number of faces along each dimension
8439318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z>                         - Specify lower-left-bottom coordinates for the box
8449318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z>                         - Specify upper-right-top coordinates for the box
845bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz>                         - Specify the `DMBoundaryType` for each direction
8469318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r>                         - The sphere radius
8479318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r>                           - Radius of the ball
8489318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz>                          - Boundary type in the z direction
8499318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n>                   - Number of wedges around the cylinder
850bdf63967SMatthew G. Knepley . -dm_plex_reorder <order>                           - Reorder the mesh using the specified algorithm
8519318fe57SMatthew G. Knepley . -dm_refine_pre <n>                                 - The number of refinements before distribution
8529318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool>                      - Flag for uniform refinement before distribution
8539318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v>                    - The maximum cell volume after refinement before distribution
8549318fe57SMatthew G. Knepley . -dm_refine <n>                                     - The number of refinements after distribution
855bdf63967SMatthew G. Knepley . -dm_extrude <l>                                    - Activate extrusion and specify the number of layers to extrude
85661f058f9SMatthew G. Knepley . -dm_plex_save_transform <bool>                     - Save the `DMPlexTransform` that produced this mesh
857d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t>           - The total thickness of extruded layers
858d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool>       - Use tensor cells when extruding
859d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool>        - Extrude layers symmetrically about the surface
860d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd>      - Specify the extrusion direction
861d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer
862909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells                     - Flag to create finite volume ghost cells on the boundary
863909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name>               - Label name for ghost cells boundary
8649318fe57SMatthew G. Knepley . -dm_distribute <bool>                              - Flag to redistribute a mesh among processes
8659318fe57SMatthew G. Knepley . -dm_distribute_overlap <n>                         - The size of the overlap halo
8669318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool>                           - Set adjacency direction
86720f4b53cSBarry Smith . -dm_plex_adj_closure <bool>                        - Set adjacency size
868d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool>                           - Use LibCEED as the FEM backend
86920f4b53cSBarry Smith . -dm_plex_check_symmetry                            - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()`
870bb7acecfSBarry Smith . -dm_plex_check_skeleton                            - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()`
871bb7acecfSBarry Smith . -dm_plex_check_faces                               - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()`
872bb7acecfSBarry Smith . -dm_plex_check_geometry                            - Check that cells have positive volume - `DMPlexCheckGeometry()`
873bb7acecfSBarry Smith . -dm_plex_check_pointsf                             - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()`
874bb7acecfSBarry Smith . -dm_plex_check_interface_cones                     - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()`
875384a6580SVaclav Hapla - -dm_plex_check_all                                 - Perform all the checks above
876d7bf68aeSBarry Smith 
87795eb5ee5SVaclav Hapla   Level: intermediate
87895eb5ee5SVaclav Hapla 
8798e704042SBarry Smith   Note:
8808e704042SBarry Smith   For some `DMType` such as `DMDA` this cannot be called after `DMSetUp()` has been called.
8818e704042SBarry Smith 
8821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
883bb7acecfSBarry Smith          `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`,
8848e704042SBarry Smith          `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA`, `DMSetUp()`
885d7bf68aeSBarry Smith @*/
886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm)
887d71ae5a4SJacob Faibussowitsch {
8887781c08eSBarry Smith   char      typeName[256];
889ca266f36SBarry Smith   PetscBool flg;
890d7bf68aeSBarry Smith 
891d7bf68aeSBarry Smith   PetscFunctionBegin;
892171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
89349be4549SMatthew G. Knepley   dm->setfromoptionscalled = PETSC_TRUE;
8949566063dSJacob Faibussowitsch   if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf));
8959566063dSJacob Faibussowitsch   if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF));
896dd4c3f67SMatthew G. Knepley   if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm));
897d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)dm);
8989566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL));
8999566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg));
9001baa6e33SBarry Smith   if (flg) PetscCall(DMSetVecType(dm, typeName));
9019566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg));
9021baa6e33SBarry Smith   if (flg) PetscCall(DMSetMatType(dm, typeName));
903863027abSJed Brown   PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL));
9049566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL));
9059566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg));
906eb9d3e4dSMatthew G. Knepley   PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL));
907dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject);
908f9ba7244SBarry Smith   /* process any options handlers added with PetscObjectAddOptionsHandler() */
909dbbe0bcdSBarry Smith   PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject));
910d0609cedSBarry Smith   PetscOptionsEnd();
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
912d7bf68aeSBarry Smith }
913d7bf68aeSBarry Smith 
914ffeef943SBarry Smith /*@
915bb7acecfSBarry Smith   DMViewFromOptions - View a `DM` in a particular way based on a request in the options database
916fe2efc57SMark 
91720f4b53cSBarry Smith   Collective
918fe2efc57SMark 
919fe2efc57SMark   Input Parameters:
920bb7acecfSBarry Smith + dm   - the `DM` object
921ce78bad3SBarry Smith . obj  - optional object that provides the prefix for the options database (if `NULL` then the prefix in `obj` is used)
92260225df5SJacob Faibussowitsch - name - option string that is used to activate viewing
923fe2efc57SMark 
924fe2efc57SMark   Level: intermediate
925bb7acecfSBarry Smith 
926bb7acecfSBarry Smith   Note:
927bb7acecfSBarry Smith   See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed
928bb7acecfSBarry Smith 
92960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()`
930fe2efc57SMark @*/
931ce78bad3SBarry Smith PetscErrorCode DMViewFromOptions(DM dm, PeOp PetscObject obj, const char name[])
932d71ae5a4SJacob Faibussowitsch {
933fe2efc57SMark   PetscFunctionBegin;
934fe2efc57SMark   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9359566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name));
9363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
937fe2efc57SMark }
938fe2efc57SMark 
939ffeef943SBarry Smith /*@
940bb7acecfSBarry Smith   DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or
941bb7acecfSBarry Smith   save the `DM` in a binary file to be loaded later or create a visualization of the `DM`
94247c6ae99SBarry Smith 
94320f4b53cSBarry Smith   Collective
94447c6ae99SBarry Smith 
945d8d19677SJose E. Roman   Input Parameters:
946bb7acecfSBarry Smith + dm - the `DM` object to view
94747c6ae99SBarry Smith - v  - the viewer
94847c6ae99SBarry Smith 
949c8a418c4SMatthew G. Knepley   Options Database Keys:
950c8a418c4SMatthew G. Knepley + -view_pyvista_warp <f>                 - Warps the mesh by the active scalar with factor f
951a36b0f0fSMatthew G. Knepley . -view_pyvista_clip <xl,xu,yl,yu,zl,zu> - Defines the clipping box
952a36b0f0fSMatthew G. Knepley . -dm_view_draw_line_color <int>         - Specify the X-window color for cell borders
953a36b0f0fSMatthew G. Knepley . -dm_view_draw_cell_color <int>         - Specify the X-window color for cells
954a36b0f0fSMatthew G. Knepley - -dm_view_draw_affine <bool>            - Flag to ignore high-order edges
955c8a418c4SMatthew G. Knepley 
95620f4b53cSBarry Smith   Level: beginner
95720f4b53cSBarry Smith 
95849c89c76SBlaise Bourdin   Notes:
95949c89c76SBlaise Bourdin 
96049c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWERHDF5` i.e. HDF5 format can be used with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` to save multiple `DMPLEX`
961bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
962bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
963cd7e8a5eSksagiyam 
96449c89c76SBlaise Bourdin   `PetscViewer` = `PETSCVIEWEREXODUSII` i.e. ExodusII format assumes that element blocks (mapped to "Cell sets" labels)
96549c89c76SBlaise Bourdin   consists of sequentially numbered cells.
96649c89c76SBlaise Bourdin 
96749c89c76SBlaise Bourdin   If `dm` has been distributed, only the part of the `DM` on MPI rank 0 (including "ghost" cells and vertices) will be written.
96849c89c76SBlaise Bourdin 
969c8a418c4SMatthew G. Knepley   Only TRI, TET, QUAD, and HEX cells are supported in ExodusII.
97049c89c76SBlaise Bourdin 
97149c89c76SBlaise Bourdin   `DMPLEX` only represents geometry while most post-processing software expect that a mesh also provides information on the discretization space. This function assumes that the file represents Lagrange finite elements of order 1 or 2.
97249c89c76SBlaise Bourdin   The order of the mesh shall be set using `PetscViewerExodusIISetOrder()`
97349c89c76SBlaise Bourdin 
974d7c1f440SPierre Jolivet   Variable names can be set and queried using `PetscViewerExodusII[Set/Get][Nodal/Zonal]VariableNames[s]`.
97549c89c76SBlaise Bourdin 
9761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()`
97747c6ae99SBarry Smith @*/
978d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v)
979d71ae5a4SJacob Faibussowitsch {
98032c0f0efSBarry Smith   PetscBool         isbinary;
98176a8abe0SBarry Smith   PetscMPIInt       size;
98276a8abe0SBarry Smith   PetscViewerFormat format;
98347c6ae99SBarry Smith 
98447c6ae99SBarry Smith   PetscFunctionBegin;
985171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
98648a46eb9SPierre Jolivet   if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v));
987b1b135c8SBarry Smith   PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2);
98874903a4fSStefano Zampini   /* Ideally, we would like to have this test on.
98974903a4fSStefano Zampini      However, it currently breaks socket viz via GLVis.
99074903a4fSStefano Zampini      During DMView(parallel_mesh,glvis_viewer), each
99174903a4fSStefano Zampini      process opens a sequential ASCII socket to visualize
99274903a4fSStefano Zampini      the local mesh, and PetscObjectView(dm,local_socket)
99374903a4fSStefano Zampini      is internally called inside VecView_GLVis, incurring
99474903a4fSStefano Zampini      in an error here */
99574903a4fSStefano Zampini   /* PetscCheckSameComm(dm,1,v,2); */
9969566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckWritable(v));
997b1b135c8SBarry Smith 
99842d0c57aSJames Wright   PetscCall(PetscLogEventBegin(DM_View, v, 0, 0, 0));
9999566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(v, &format));
10009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
10013ba16761SJacob Faibussowitsch   if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS);
10029566063dSJacob Faibussowitsch   PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v));
10039566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary));
100432c0f0efSBarry Smith   if (isbinary) {
100555849f57SBarry Smith     PetscInt classid = DM_FILE_CLASSID;
100632c0f0efSBarry Smith     char     type[256];
100732c0f0efSBarry Smith 
10089566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT));
1009c6a7a370SJeremy L Thompson     PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type)));
10109566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR));
101132c0f0efSBarry Smith   }
1012dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, view, v);
101342d0c57aSJames Wright   PetscCall(PetscLogEventEnd(DM_View, v, 0, 0, 0));
10143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
101547c6ae99SBarry Smith }
101647c6ae99SBarry Smith 
101747c6ae99SBarry Smith /*@
1018bb7acecfSBarry Smith   DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks,
1019bb7acecfSBarry Smith   that is it has no ghost locations.
102047c6ae99SBarry Smith 
102120f4b53cSBarry Smith   Collective
102247c6ae99SBarry Smith 
102347c6ae99SBarry Smith   Input Parameter:
1024bb7acecfSBarry Smith . dm - the `DM` object
102547c6ae99SBarry Smith 
102647c6ae99SBarry Smith   Output Parameter:
102747c6ae99SBarry Smith . vec - the global vector
102847c6ae99SBarry Smith 
1029073dac72SJed Brown   Level: beginner
103047c6ae99SBarry Smith 
10311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1032bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
103347c6ae99SBarry Smith @*/
1034d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec)
1035d71ae5a4SJacob Faibussowitsch {
103647c6ae99SBarry Smith   PetscFunctionBegin;
1037171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10384f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1039dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createglobalvector, vec);
104076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1041c6b011d8SStefano Zampini     DM vdm;
1042c6b011d8SStefano Zampini 
10439566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10447a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1045c6b011d8SStefano Zampini   }
10463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
104747c6ae99SBarry Smith }
104847c6ae99SBarry Smith 
104947c6ae99SBarry Smith /*@
1050bb7acecfSBarry Smith   DMCreateLocalVector - Creates a local vector from a `DM` object.
105147c6ae99SBarry Smith 
105247c6ae99SBarry Smith   Not Collective
105347c6ae99SBarry Smith 
105447c6ae99SBarry Smith   Input Parameter:
1055bb7acecfSBarry Smith . dm - the `DM` object
105647c6ae99SBarry Smith 
105747c6ae99SBarry Smith   Output Parameter:
105847c6ae99SBarry Smith . vec - the local vector
105947c6ae99SBarry Smith 
1060073dac72SJed Brown   Level: beginner
106147c6ae99SBarry Smith 
106220f4b53cSBarry Smith   Note:
1063bb7acecfSBarry Smith   A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations.
1064bb7acecfSBarry Smith 
10651cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`
1066bb7acecfSBarry Smith          `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()`
106747c6ae99SBarry Smith @*/
1068d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec)
1069d71ae5a4SJacob Faibussowitsch {
107047c6ae99SBarry Smith   PetscFunctionBegin;
1071171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
10724f572ea9SToby Isaac   PetscAssertPointer(vec, 2);
1073dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createlocalvector, vec);
107476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1075c6b011d8SStefano Zampini     DM vdm;
1076c6b011d8SStefano Zampini 
10779566063dSJacob Faibussowitsch     PetscCall(VecGetDM(*vec, &vdm));
10787a8be351SBarry Smith     PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name);
1079c6b011d8SStefano Zampini   }
10803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
108147c6ae99SBarry Smith }
108247c6ae99SBarry Smith 
10831411c6eeSJed Brown /*@
1084bb7acecfSBarry Smith   DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`.
10851411c6eeSJed Brown 
108620f4b53cSBarry Smith   Collective
10871411c6eeSJed Brown 
10881411c6eeSJed Brown   Input Parameter:
1089bb7acecfSBarry Smith . dm - the `DM` that provides the mapping
10901411c6eeSJed Brown 
10911411c6eeSJed Brown   Output Parameter:
10921411c6eeSJed Brown . ltog - the mapping
10931411c6eeSJed Brown 
1094bb7acecfSBarry Smith   Level: advanced
10951411c6eeSJed Brown 
10961411c6eeSJed Brown   Notes:
1097bb7acecfSBarry Smith   The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()`
10981411c6eeSJed Brown 
1099bb7acecfSBarry Smith   Vectors obtained with  `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do
1100bb7acecfSBarry Smith   need to use this function with those objects.
1101bb7acecfSBarry Smith 
1102bb7acecfSBarry Smith   This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`.
1103bb7acecfSBarry Smith 
110460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`,
1105bb7acecfSBarry Smith           `DMCreateMatrix()`
11061411c6eeSJed Brown @*/
1107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog)
1108d71ae5a4SJacob Faibussowitsch {
11090be3e97aSMatthew G. Knepley   PetscInt bs = -1, bsLocal[2], bsMinMax[2];
11101411c6eeSJed Brown 
11111411c6eeSJed Brown   PetscFunctionBegin;
11121411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11134f572ea9SToby Isaac   PetscAssertPointer(ltog, 2);
11141411c6eeSJed Brown   if (!dm->ltogmap) {
111537d0c07bSMatthew G Knepley     PetscSection section, sectionGlobal;
111637d0c07bSMatthew G Knepley 
11179566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
111837d0c07bSMatthew G Knepley     if (section) {
1119a974ec88SMatthew G. Knepley       const PetscInt *cdofs;
112037d0c07bSMatthew G Knepley       PetscInt       *ltog;
1121ccf3bd66SMatthew G. Knepley       PetscInt        pStart, pEnd, n, p, k, l;
112237d0c07bSMatthew G Knepley 
11239566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
11249566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(section, &pStart, &pEnd));
11259566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetStorageSize(section, &n));
11269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &ltog)); /* We want the local+overlap size */
112737d0c07bSMatthew G Knepley       for (p = pStart, l = 0; p < pEnd; ++p) {
1128e6befd46SJed Brown         PetscInt bdof, cdof, dof, off, c, cind;
112937d0c07bSMatthew G Knepley 
113037d0c07bSMatthew G Knepley         /* Should probably use constrained dofs */
11319566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(section, p, &dof));
11329566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(section, p, &cdof));
11339566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs));
11349566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off));
11351a7dc684SMatthew G. Knepley         /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */
11361a7dc684SMatthew G. Knepley         bdof = cdof && (dof - cdof) ? 1 : dof;
1137ad540459SPierre Jolivet         if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof);
11385227eafbSStefano Zampini 
1139e6befd46SJed Brown         for (c = 0, cind = 0; c < dof; ++c, ++l) {
11405227eafbSStefano Zampini           if (cind < cdof && c == cdofs[cind]) {
1141e6befd46SJed Brown             ltog[l] = off < 0 ? off - c : -(off + c + 1);
1142e6befd46SJed Brown             cind++;
1143e6befd46SJed Brown           } else {
11445227eafbSStefano Zampini             ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind;
1145e6befd46SJed Brown           }
114637d0c07bSMatthew G Knepley         }
114737d0c07bSMatthew G Knepley       }
1148bff27382SMatthew G. Knepley       /* Must have same blocksize on all procs (some might have no points) */
11491690c2aeSBarry Smith       bsLocal[0] = bs < 0 ? PETSC_INT_MAX : bs;
11509371c9d4SSatish Balay       bsLocal[1] = bs;
11519566063dSJacob Faibussowitsch       PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax));
11529371c9d4SSatish Balay       if (bsMinMax[0] != bsMinMax[1]) {
11539371c9d4SSatish Balay         bs = 1;
11549371c9d4SSatish Balay       } else {
11559371c9d4SSatish Balay         bs = bsMinMax[0];
11569371c9d4SSatish Balay       }
11577591dbb2SMatthew G. Knepley       bs = bs < 0 ? 1 : bs;
11587591dbb2SMatthew G. Knepley       /* Must reduce indices by blocksize */
1159ccf3bd66SMatthew G. Knepley       if (bs > 1) {
1160ca469d19SJed Brown         for (l = 0, k = 0; l < n; l += bs, ++k) {
1161ca469d19SJed Brown           // Integer division of negative values truncates toward zero(!), not toward negative infinity
1162ca469d19SJed Brown           ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1);
1163ca469d19SJed Brown         }
1164ccf3bd66SMatthew G. Knepley         n /= bs;
1165ccf3bd66SMatthew G. Knepley       }
11669566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap));
1167dbbe0bcdSBarry Smith     } else PetscUseTypeMethod(dm, getlocaltoglobalmapping);
116837d0c07bSMatthew G Knepley   }
11691411c6eeSJed Brown   *ltog = dm->ltogmap;
11703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11711411c6eeSJed Brown }
11721411c6eeSJed Brown 
11731411c6eeSJed Brown /*@
1174bb7acecfSBarry Smith   DMGetBlockSize - Gets the inherent block size associated with a `DM`
11751411c6eeSJed Brown 
11761411c6eeSJed Brown   Not Collective
11771411c6eeSJed Brown 
11781411c6eeSJed Brown   Input Parameter:
1179bb7acecfSBarry Smith . dm - the `DM` with block structure
11801411c6eeSJed Brown 
11811411c6eeSJed Brown   Output Parameter:
11821411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure
11831411c6eeSJed Brown 
11841411c6eeSJed Brown   Level: intermediate
11851411c6eeSJed Brown 
118673ff1848SBarry Smith   Notes:
1187bb7acecfSBarry Smith   This might be the number of degrees of freedom at each grid point for a structured grid.
1188bb7acecfSBarry Smith 
1189bb7acecfSBarry Smith   Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but
1190bb7acecfSBarry Smith   rather different locations in the vectors may have a different block size.
1191bb7acecfSBarry Smith 
11921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()`
11931411c6eeSJed Brown @*/
1194d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs)
1195d71ae5a4SJacob Faibussowitsch {
11961411c6eeSJed Brown   PetscFunctionBegin;
11971411c6eeSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
11984f572ea9SToby Isaac   PetscAssertPointer(bs, 2);
11997a8be351SBarry Smith   PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet");
12001411c6eeSJed Brown   *bs = dm->bs;
12013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12021411c6eeSJed Brown }
12031411c6eeSJed Brown 
1204ffeef943SBarry Smith /*@
1205bb7acecfSBarry Smith   DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1206bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`.
120747c6ae99SBarry Smith 
120820f4b53cSBarry Smith   Collective
120947c6ae99SBarry Smith 
1210d8d19677SJose E. Roman   Input Parameters:
1211bb7acecfSBarry Smith + dmc - the `DM` object
1212bb7acecfSBarry Smith - dmf - the second, finer `DM` object
121347c6ae99SBarry Smith 
1214d8d19677SJose E. Roman   Output Parameters:
121547c6ae99SBarry Smith + mat - the interpolation
1216b6971eaeSBarry Smith - vec - the scaling (optional, pass `NULL` if not needed), see `DMCreateInterpolationScale()`
121747c6ae99SBarry Smith 
121847c6ae99SBarry Smith   Level: developer
121947c6ae99SBarry Smith 
122095452b02SPatrick Sanan   Notes:
1221bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1222bb7acecfSBarry Smith   DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation.
1223d52bd9f3SBarry Smith 
1224bb7acecfSBarry Smith   For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate
1225bb7acecfSBarry Smith   vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic.
122685afcc9aSBarry Smith 
12271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()`
122847c6ae99SBarry Smith @*/
1229d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec)
1230d71ae5a4SJacob Faibussowitsch {
123147c6ae99SBarry Smith   PetscFunctionBegin;
1232a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1233a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
12344f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
12359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0));
1236dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec);
12379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0));
12383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
123947c6ae99SBarry Smith }
124047c6ae99SBarry Smith 
12413ad4599aSBarry Smith /*@
1242a4e35b19SJacob Faibussowitsch   DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is
1243a4e35b19SJacob Faibussowitsch   the transpose of the interpolation between the `DM`.
12442ed6491fSPatrick Sanan 
12452ed6491fSPatrick Sanan   Input Parameters:
1246bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh
1247bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh
12482ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse
12492ed6491fSPatrick Sanan 
12502ed6491fSPatrick Sanan   Output Parameter:
12512ed6491fSPatrick Sanan . scale - the scaled vector
12522ed6491fSPatrick Sanan 
1253bb7acecfSBarry Smith   Level: advanced
12542ed6491fSPatrick Sanan 
125573ff1848SBarry Smith   Note:
1256a4e35b19SJacob Faibussowitsch   xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual)
1257a4e35b19SJacob Faibussowitsch   restriction. In other words xcoarse is the coarse representation of xfine.
1258a4e35b19SJacob Faibussowitsch 
125973ff1848SBarry Smith   Developer Note:
1260bb7acecfSBarry Smith   If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()`
1261e9c74fd6SRichard Tran Mills   on the restriction/interpolation operator to set the bindingpropagates flag to true.
1262e9c74fd6SRichard Tran Mills 
126360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()`
12642ed6491fSPatrick Sanan @*/
1265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale)
1266d71ae5a4SJacob Faibussowitsch {
12672ed6491fSPatrick Sanan   Vec         fine;
12682ed6491fSPatrick Sanan   PetscScalar one = 1.0;
12699704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
1270e9c74fd6SRichard Tran Mills   PetscBool bindingpropagates, isbound;
12719704db99SRichard Tran Mills #endif
12722ed6491fSPatrick Sanan 
12732ed6491fSPatrick Sanan   PetscFunctionBegin;
12749566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(daf, &fine));
12759566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(dac, scale));
12769566063dSJacob Faibussowitsch   PetscCall(VecSet(fine, one));
12779704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA)
12789704db99SRichard Tran Mills   /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well.
12799704db99SRichard Tran Mills    * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL,
12809704db99SRichard Tran Mills    * we'll need to do it for that case, too.*/
12819566063dSJacob Faibussowitsch   PetscCall(VecGetBindingPropagates(fine, &bindingpropagates));
1282e9c74fd6SRichard Tran Mills   if (bindingpropagates) {
12839566063dSJacob Faibussowitsch     PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE));
12849566063dSJacob Faibussowitsch     PetscCall(VecBoundToCPU(fine, &isbound));
12859566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(mat, isbound));
128683aa49f4SRichard Tran Mills   }
12879704db99SRichard Tran Mills #endif
12889566063dSJacob Faibussowitsch   PetscCall(MatRestrict(mat, fine, *scale));
12899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&fine));
12909566063dSJacob Faibussowitsch   PetscCall(VecReciprocal(*scale));
12913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12922ed6491fSPatrick Sanan }
12932ed6491fSPatrick Sanan 
12942ed6491fSPatrick Sanan /*@
1295bb7acecfSBarry Smith   DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by
1296bb7acecfSBarry Smith   `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`.
12973ad4599aSBarry Smith 
129820f4b53cSBarry Smith   Collective
12993ad4599aSBarry Smith 
1300d8d19677SJose E. Roman   Input Parameters:
1301bb7acecfSBarry Smith + dmc - the `DM` object
1302bb7acecfSBarry Smith - dmf - the second, finer `DM` object
13033ad4599aSBarry Smith 
13043ad4599aSBarry Smith   Output Parameter:
13053ad4599aSBarry Smith . mat - the restriction
13063ad4599aSBarry Smith 
13073ad4599aSBarry Smith   Level: developer
13083ad4599aSBarry Smith 
1309bb7acecfSBarry Smith   Note:
1310bb7acecfSBarry Smith   This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that
1311bb7acecfSBarry Smith   matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object.
13123ad4599aSBarry Smith 
13131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()`
13143ad4599aSBarry Smith @*/
1315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat)
1316d71ae5a4SJacob Faibussowitsch {
13173ad4599aSBarry Smith   PetscFunctionBegin;
1318a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
1319a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13204f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0));
1322dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createrestriction, dmf, mat);
13239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0));
13243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13253ad4599aSBarry Smith }
13263ad4599aSBarry Smith 
132747c6ae99SBarry Smith /*@
1328a4e35b19SJacob Faibussowitsch   DMCreateInjection - Gets injection matrix between two `DM` objects.
132947c6ae99SBarry Smith 
133020f4b53cSBarry Smith   Collective
133147c6ae99SBarry Smith 
1332d8d19677SJose E. Roman   Input Parameters:
1333bb7acecfSBarry Smith + dac - the `DM` object
1334bb7acecfSBarry Smith - daf - the second, finer `DM` object
133547c6ae99SBarry Smith 
133647c6ae99SBarry Smith   Output Parameter:
13376dbf9973SLawrence Mitchell . mat - the injection
133847c6ae99SBarry Smith 
133947c6ae99SBarry Smith   Level: developer
134047c6ae99SBarry Smith 
1341a4e35b19SJacob Faibussowitsch   Notes:
1342a4e35b19SJacob Faibussowitsch   This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the
1343a4e35b19SJacob Faibussowitsch   fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting
1344a4e35b19SJacob Faibussowitsch   the values on the coarse grid points. This compares to the operator obtained by
1345a4e35b19SJacob Faibussowitsch   `DMCreateRestriction()` or the transpose of the operator obtained by
1346a4e35b19SJacob Faibussowitsch   `DMCreateInterpolation()` that uses a "local weighted average" of the values around the
1347a4e35b19SJacob Faibussowitsch   coarse grid point as the coarse grid value.
1348a4e35b19SJacob Faibussowitsch 
1349bb7acecfSBarry Smith   For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by
1350bb7acecfSBarry Smith   `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection.
135185afcc9aSBarry Smith 
13521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`,
1353bb7acecfSBarry Smith           `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()`
135447c6ae99SBarry Smith @*/
1355d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat)
1356d71ae5a4SJacob Faibussowitsch {
135747c6ae99SBarry Smith   PetscFunctionBegin;
1358a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dac, DM_CLASSID, 1);
1359a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(daf, DM_CLASSID, 2);
13604f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0));
1362dbbe0bcdSBarry Smith   PetscUseTypeMethod(dac, createinjection, daf, mat);
13639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0));
13643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
136547c6ae99SBarry Smith }
136647c6ae99SBarry Smith 
1367b412c318SBarry Smith /*@
1368bb7acecfSBarry Smith   DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a
1369bb7acecfSBarry Smith   a Galerkin finite element model on the `DM`
1370bd041c0cSMatthew G. Knepley 
137120f4b53cSBarry Smith   Collective
1372bd041c0cSMatthew G. Knepley 
1373d8d19677SJose E. Roman   Input Parameters:
1374bb7acecfSBarry Smith + dmc - the target `DM` object
13758c1c0954SStefano Zampini - dmf - the source `DM` object, can be `NULL`
1376bd041c0cSMatthew G. Knepley 
1377bd041c0cSMatthew G. Knepley   Output Parameter:
1378b4937a87SMatthew G. Knepley . mat - the mass matrix
1379bd041c0cSMatthew G. Knepley 
1380bd041c0cSMatthew G. Knepley   Level: developer
1381bd041c0cSMatthew G. Knepley 
1382bb7acecfSBarry Smith   Notes:
1383bb7acecfSBarry Smith   For `DMPLEX` the finite element model for the `DM` must have been already provided.
1384bb7acecfSBarry Smith 
13858c1c0954SStefano Zampini   if `dmc` is `dmf` or `NULL`, then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()`
1386bb7acecfSBarry Smith 
138742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1388bd041c0cSMatthew G. Knepley @*/
1389d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat)
1390d71ae5a4SJacob Faibussowitsch {
1391bd041c0cSMatthew G. Knepley   PetscFunctionBegin;
1392b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmc, DM_CLASSID, 1);
13938c1c0954SStefano Zampini   if (!dmf) dmf = dmc;
1394b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dmf, DM_CLASSID, 2);
13954f572ea9SToby Isaac   PetscAssertPointer(mat, 3);
13968c1c0954SStefano Zampini   PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, dmc, dmf, 0, 0));
1397dbbe0bcdSBarry Smith   PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat);
13988c1c0954SStefano Zampini   PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, dmc, dmf, 0, 0));
13993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1400b4937a87SMatthew G. Knepley }
1401b4937a87SMatthew G. Knepley 
1402b4937a87SMatthew G. Knepley /*@
1403bb7acecfSBarry Smith   DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM`
1404b4937a87SMatthew G. Knepley 
140520f4b53cSBarry Smith   Collective
1406b4937a87SMatthew G. Knepley 
1407b4937a87SMatthew G. Knepley   Input Parameter:
1408bb7acecfSBarry Smith . dm - the `DM` object
1409b4937a87SMatthew G. Knepley 
14107dcfde4dSJose E. Roman   Output Parameters:
14118e9849d2SStefano Zampini + llm - the local lumped mass matrix, which is a diagonal matrix, represented as a vector
14128e9849d2SStefano Zampini - lm  - the global lumped mass matrix, which is a diagonal matrix, represented as a vector
1413b4937a87SMatthew G. Knepley 
1414b4937a87SMatthew G. Knepley   Level: developer
1415b4937a87SMatthew G. Knepley 
1416bb7acecfSBarry Smith   Note:
1417bb7acecfSBarry Smith   See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix.
1418bb7acecfSBarry Smith 
141960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()`
1420b4937a87SMatthew G. Knepley @*/
14218e9849d2SStefano Zampini PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *llm, Vec *lm)
1422d71ae5a4SJacob Faibussowitsch {
1423b4937a87SMatthew G. Knepley   PetscFunctionBegin;
1424b4937a87SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14258e9849d2SStefano Zampini   if (llm) PetscAssertPointer(llm, 2);
14268e9849d2SStefano Zampini   if (lm) PetscAssertPointer(lm, 3);
14278e9849d2SStefano Zampini   if (llm || lm) PetscUseTypeMethod(dm, createmassmatrixlumped, llm, lm);
14283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1429bd041c0cSMatthew G. Knepley }
1430bd041c0cSMatthew G. Knepley 
1431bd041c0cSMatthew G. Knepley /*@
1432bb7acecfSBarry Smith   DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization
1433bb7acecfSBarry Smith   of a PDE on the `DM`.
143447c6ae99SBarry Smith 
143520f4b53cSBarry Smith   Collective
143647c6ae99SBarry Smith 
1437d8d19677SJose E. Roman   Input Parameters:
1438bb7acecfSBarry Smith + dm    - the `DM` object
1439bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL`
144047c6ae99SBarry Smith 
144147c6ae99SBarry Smith   Output Parameter:
144247c6ae99SBarry Smith . coloring - the coloring
144347c6ae99SBarry Smith 
14441bf8429eSBarry Smith   Level: developer
14451bf8429eSBarry Smith 
1446ec5066bdSBarry Smith   Notes:
1447bb7acecfSBarry Smith   Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the
1448bb7acecfSBarry Smith   matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors).
1449ec5066bdSBarry Smith 
1450bb7acecfSBarry Smith   This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()`
14511bf8429eSBarry Smith   For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1,
14521bf8429eSBarry Smith   otherwise an error will be generated.
1453ec5066bdSBarry Smith 
14541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()`
1455aab9d709SJed Brown @*/
1456d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring)
1457d71ae5a4SJacob Faibussowitsch {
145847c6ae99SBarry Smith   PetscFunctionBegin;
1459171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
14604f572ea9SToby Isaac   PetscAssertPointer(coloring, 3);
1461dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getcoloring, ctype, coloring);
14623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
146347c6ae99SBarry Smith }
146447c6ae99SBarry Smith 
1465b412c318SBarry Smith /*@
1466bb7acecfSBarry Smith   DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator.
146747c6ae99SBarry Smith 
146820f4b53cSBarry Smith   Collective
146947c6ae99SBarry Smith 
147047c6ae99SBarry Smith   Input Parameter:
1471bb7acecfSBarry Smith . dm - the `DM` object
147247c6ae99SBarry Smith 
147347c6ae99SBarry Smith   Output Parameter:
147447c6ae99SBarry Smith . mat - the empty Jacobian
147547c6ae99SBarry Smith 
147620f4b53cSBarry Smith   Options Database Key:
1477bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros
1478f27dd7c6SMatthew G. Knepley 
147920f4b53cSBarry Smith   Level: beginner
148020f4b53cSBarry Smith 
148195452b02SPatrick Sanan   Notes:
148295452b02SPatrick Sanan   This properly preallocates the number of nonzeros in the sparse matrix so you
148394013140SBarry Smith   do not need to do it yourself.
148494013140SBarry Smith 
148594013140SBarry Smith   By default it also sets the nonzero structure and puts in the zero entries. To prevent setting
1486bb7acecfSBarry Smith   the nonzero pattern call `DMSetMatrixPreallocateOnly()`
148794013140SBarry Smith 
1488bb7acecfSBarry Smith   For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used
148994013140SBarry Smith   internally by PETSc.
149094013140SBarry Smith 
1491bb7acecfSBarry Smith   For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because
1492bb7acecfSBarry Smith   `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute
149394013140SBarry Smith 
14941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()`
1495aab9d709SJed Brown @*/
1496d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat)
1497d71ae5a4SJacob Faibussowitsch {
149847c6ae99SBarry Smith   PetscFunctionBegin;
1499171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
15004f572ea9SToby Isaac   PetscAssertPointer(mat, 2);
15019566063dSJacob Faibussowitsch   PetscCall(MatInitializePackage());
15029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0));
1503dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, creatematrix, mat);
150476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
1505c6b011d8SStefano Zampini     DM mdm;
1506c6b011d8SStefano Zampini 
15079566063dSJacob Faibussowitsch     PetscCall(MatGetDM(*mat, &mdm));
15087a8be351SBarry Smith     PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name);
1509c6b011d8SStefano Zampini   }
1510e571a35bSMatthew G. Knepley   /* Handle nullspace and near nullspace */
1511e5e52638SMatthew G. Knepley   if (dm->Nf) {
1512e571a35bSMatthew G. Knepley     MatNullSpace nullSpace;
1513649ef022SMatthew Knepley     PetscInt     Nf, f;
1514e571a35bSMatthew G. Knepley 
15159566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
1516649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1517*4758e3ceSMatthew G. Knepley       if (dm->nullspaceConstructors && dm->nullspaceConstructors[f]) {
15189566063dSJacob Faibussowitsch         PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace));
15199566063dSJacob Faibussowitsch         PetscCall(MatSetNullSpace(*mat, nullSpace));
15209566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1521649ef022SMatthew Knepley         break;
1522e571a35bSMatthew G. Knepley       }
1523649ef022SMatthew Knepley     }
1524649ef022SMatthew Knepley     for (f = 0; f < Nf; ++f) {
1525*4758e3ceSMatthew G. Knepley       if (dm->nearnullspaceConstructors && dm->nearnullspaceConstructors[f]) {
15269566063dSJacob Faibussowitsch         PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace));
15279566063dSJacob Faibussowitsch         PetscCall(MatSetNearNullSpace(*mat, nullSpace));
15289566063dSJacob Faibussowitsch         PetscCall(MatNullSpaceDestroy(&nullSpace));
1529e571a35bSMatthew G. Knepley       }
1530e571a35bSMatthew G. Knepley     }
1531e571a35bSMatthew G. Knepley   }
15329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0));
15333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
153447c6ae99SBarry Smith }
153547c6ae99SBarry Smith 
1536732e2eb9SMatthew G Knepley /*@
1537a4e35b19SJacob Faibussowitsch   DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and
1538a4e35b19SJacob Faibussowitsch   `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the
1539a4e35b19SJacob Faibussowitsch   matrices will not be preallocated.
1540aa0f6e3cSJed Brown 
154120f4b53cSBarry Smith   Logically Collective
1542aa0f6e3cSJed Brown 
1543aa0f6e3cSJed Brown   Input Parameters:
1544bb7acecfSBarry Smith + dm   - the `DM`
1545bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation
1546aa0f6e3cSJed Brown 
1547aa0f6e3cSJed Brown   Level: developer
1548aa0f6e3cSJed Brown 
154973ff1848SBarry Smith   Note:
1550a4e35b19SJacob Faibussowitsch   This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and
1551a4e35b19SJacob Faibussowitsch   `MatSetValuesCOO()` will be used.
1552a4e35b19SJacob Faibussowitsch 
15531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()`
1554aa0f6e3cSJed Brown @*/
1555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip)
1556d71ae5a4SJacob Faibussowitsch {
1557aa0f6e3cSJed Brown   PetscFunctionBegin;
1558aa0f6e3cSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1559aa0f6e3cSJed Brown   dm->prealloc_skip = skip;
15603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1561aa0f6e3cSJed Brown }
1562aa0f6e3cSJed Brown 
1563aa0f6e3cSJed Brown /*@
1564bb7acecfSBarry Smith   DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly
1565732e2eb9SMatthew G Knepley   preallocated but the nonzero structure and zero values will not be set.
1566732e2eb9SMatthew G Knepley 
156720f4b53cSBarry Smith   Logically Collective
1568732e2eb9SMatthew G Knepley 
1569d8d19677SJose E. Roman   Input Parameters:
1570bb7acecfSBarry Smith + dm   - the `DM`
1571bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation
1572732e2eb9SMatthew G Knepley 
157320f4b53cSBarry Smith   Options Database Key:
1574bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros
1575f27dd7c6SMatthew G. Knepley 
157620f4b53cSBarry Smith   Level: developer
157720f4b53cSBarry Smith 
15781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()`
1579732e2eb9SMatthew G Knepley @*/
1580d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only)
1581d71ae5a4SJacob Faibussowitsch {
1582732e2eb9SMatthew G Knepley   PetscFunctionBegin;
1583732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1584732e2eb9SMatthew G Knepley   dm->prealloc_only = only;
15853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1586732e2eb9SMatthew G Knepley }
1587732e2eb9SMatthew G Knepley 
1588b06ff27eSHong Zhang /*@
15890b4b7b1cSBarry Smith   DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix nonzero structure will be created
1590bb7acecfSBarry Smith   but the array for numerical values will not be allocated.
1591b06ff27eSHong Zhang 
159220f4b53cSBarry Smith   Logically Collective
1593b06ff27eSHong Zhang 
1594d8d19677SJose E. Roman   Input Parameters:
1595bb7acecfSBarry Smith + dm   - the `DM`
15960b4b7b1cSBarry Smith - only - `PETSC_TRUE` if you only want matrix nonzero structure
1597b06ff27eSHong Zhang 
1598b06ff27eSHong Zhang   Level: developer
1599bb7acecfSBarry Smith 
16001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()`
1601b06ff27eSHong Zhang @*/
1602d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only)
1603d71ae5a4SJacob Faibussowitsch {
1604b06ff27eSHong Zhang   PetscFunctionBegin;
1605b06ff27eSHong Zhang   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1606b06ff27eSHong Zhang   dm->structure_only = only;
16073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1608b06ff27eSHong Zhang }
1609b06ff27eSHong Zhang 
1610863027abSJed Brown /*@
1611863027abSJed Brown   DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1612863027abSJed Brown 
161320f4b53cSBarry Smith   Logically Collective
1614863027abSJed Brown 
1615863027abSJed Brown   Input Parameters:
1616863027abSJed Brown + dm    - the `DM`
1617863027abSJed Brown - btype - block by topological point or field node
1618863027abSJed Brown 
161920f4b53cSBarry Smith   Options Database Key:
16200e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking
1621863027abSJed Brown 
162220f4b53cSBarry Smith   Level: advanced
162320f4b53cSBarry Smith 
16241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1625863027abSJed Brown @*/
1626863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype)
1627863027abSJed Brown {
1628863027abSJed Brown   PetscFunctionBegin;
1629863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1630863027abSJed Brown   dm->blocking_type = btype;
16313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1632863027abSJed Brown }
1633863027abSJed Brown 
1634863027abSJed Brown /*@
1635863027abSJed Brown   DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called
1636863027abSJed Brown 
1637863027abSJed Brown   Not Collective
1638863027abSJed Brown 
16392fe279fdSBarry Smith   Input Parameter:
1640863027abSJed Brown . dm - the `DM`
1641863027abSJed Brown 
16422fe279fdSBarry Smith   Output Parameter:
1643863027abSJed Brown . btype - block by topological point or field node
1644863027abSJed Brown 
1645863027abSJed Brown   Level: advanced
1646863027abSJed Brown 
16471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()`
1648863027abSJed Brown @*/
1649863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype)
1650863027abSJed Brown {
1651863027abSJed Brown   PetscFunctionBegin;
1652863027abSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16534f572ea9SToby Isaac   PetscAssertPointer(btype, 2);
1654863027abSJed Brown   *btype = dm->blocking_type;
16553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1656863027abSJed Brown }
1657863027abSJed Brown 
1658a89ea682SMatthew G Knepley /*@C
1659bb7acecfSBarry Smith   DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()`
1660a89ea682SMatthew G Knepley 
1661a89ea682SMatthew G Knepley   Not Collective
1662a89ea682SMatthew G Knepley 
1663a89ea682SMatthew G Knepley   Input Parameters:
1664bb7acecfSBarry Smith + dm    - the `DM` object
1665a5b23f4aSJose E. Roman . count - The minimum size
166620f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`)
1667a89ea682SMatthew G Knepley 
1668a89ea682SMatthew G Knepley   Output Parameter:
166960225df5SJacob Faibussowitsch . mem - the work array
1670a89ea682SMatthew G Knepley 
1671a89ea682SMatthew G Knepley   Level: developer
1672a89ea682SMatthew G Knepley 
167373ff1848SBarry Smith   Notes:
1674da81f932SPierre Jolivet   A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()`
1675bb7acecfSBarry Smith 
1676bb7acecfSBarry Smith   The array may contain nonzero values
1677bb7acecfSBarry Smith 
16781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()`
1679a89ea682SMatthew G Knepley @*/
1680d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1681d71ae5a4SJacob Faibussowitsch {
1682aa1993deSMatthew G Knepley   DMWorkLink  link;
168369291d52SBarry Smith   PetscMPIInt dsize;
1684a89ea682SMatthew G Knepley 
1685a89ea682SMatthew G Knepley   PetscFunctionBegin;
1686a89ea682SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
16874f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1688442f3b32SStefano Zampini   if (!count) {
1689442f3b32SStefano Zampini     *(void **)mem = NULL;
1690442f3b32SStefano Zampini     PetscFunctionReturn(PETSC_SUCCESS);
1691442f3b32SStefano Zampini   }
1692aa1993deSMatthew G Knepley   if (dm->workin) {
1693aa1993deSMatthew G Knepley     link       = dm->workin;
1694aa1993deSMatthew G Knepley     dm->workin = dm->workin->next;
1695aa1993deSMatthew G Knepley   } else {
16964dfa11a4SJacob Faibussowitsch     PetscCall(PetscNew(&link));
1697a89ea682SMatthew G Knepley   }
1698b77fa653SStefano Zampini   /* Avoid MPI_Type_size for most used datatypes
1699b77fa653SStefano Zampini      Get size directly */
1700b77fa653SStefano Zampini   if (dtype == MPIU_INT) dsize = sizeof(PetscInt);
1701b77fa653SStefano Zampini   else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal);
1702b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
1703b77fa653SStefano Zampini   else if (dtype == MPI_INT) dsize = sizeof(int);
1704b77fa653SStefano Zampini #endif
1705b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX)
1706b77fa653SStefano Zampini   else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar);
1707b77fa653SStefano Zampini #endif
1708b77fa653SStefano Zampini   else PetscCallMPI(MPI_Type_size(dtype, &dsize));
1709b77fa653SStefano Zampini 
17105056fcd2SBarry Smith   if (((size_t)dsize * count) > link->bytes) {
17119566063dSJacob Faibussowitsch     PetscCall(PetscFree(link->mem));
17129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc(dsize * count, &link->mem));
1713854ce69bSBarry Smith     link->bytes = dsize * count;
1714aa1993deSMatthew G Knepley   }
1715aa1993deSMatthew G Knepley   link->next    = dm->workout;
1716aa1993deSMatthew G Knepley   dm->workout   = link;
1717aa1993deSMatthew G Knepley   *(void **)mem = link->mem;
17183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1719a89ea682SMatthew G Knepley }
1720a89ea682SMatthew G Knepley 
1721aa1993deSMatthew G Knepley /*@C
1722bb7acecfSBarry Smith   DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()`
1723aa1993deSMatthew G Knepley 
1724aa1993deSMatthew G Knepley   Not Collective
1725aa1993deSMatthew G Knepley 
1726aa1993deSMatthew G Knepley   Input Parameters:
1727bb7acecfSBarry Smith + dm    - the `DM` object
1728a5b23f4aSJose E. Roman . count - The minimum size
172920f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT`
1730aa1993deSMatthew G Knepley 
1731aa1993deSMatthew G Knepley   Output Parameter:
173260225df5SJacob Faibussowitsch . mem - the work array
1733aa1993deSMatthew G Knepley 
1734aa1993deSMatthew G Knepley   Level: developer
1735aa1993deSMatthew G Knepley 
173673ff1848SBarry Smith   Developer Note:
1737bb7acecfSBarry Smith   count and dtype are ignored, they are only needed for `DMGetWorkArray()`
1738147403d9SBarry Smith 
17391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()`
1740aa1993deSMatthew G Knepley @*/
1741d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem)
1742d71ae5a4SJacob Faibussowitsch {
1743aa1993deSMatthew G Knepley   DMWorkLink *p, link;
1744aa1993deSMatthew G Knepley 
1745aa1993deSMatthew G Knepley   PetscFunctionBegin;
17464f572ea9SToby Isaac   PetscAssertPointer(mem, 4);
1747a4e35b19SJacob Faibussowitsch   (void)count;
1748a4e35b19SJacob Faibussowitsch   (void)dtype;
1749442f3b32SStefano Zampini   if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS);
1750aa1993deSMatthew G Knepley   for (p = &dm->workout; (link = *p); p = &link->next) {
1751aa1993deSMatthew G Knepley     if (link->mem == *(void **)mem) {
1752aa1993deSMatthew G Knepley       *p            = link->next;
1753aa1993deSMatthew G Knepley       link->next    = dm->workin;
1754aa1993deSMatthew G Knepley       dm->workin    = link;
17550298fd71SBarry Smith       *(void **)mem = NULL;
17563ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1757aa1993deSMatthew G Knepley     }
1758aa1993deSMatthew G Knepley   }
1759aa1993deSMatthew G Knepley   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out");
1760aa1993deSMatthew G Knepley }
1761e7c4fc90SDmitry Karpeev 
17628cda7954SMatthew G. Knepley /*@C
1763bb7acecfSBarry Smith   DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces
1764bb7acecfSBarry Smith   are joined or split, such as in `DMCreateSubDM()`
17658cda7954SMatthew G. Knepley 
176620f4b53cSBarry Smith   Logically Collective; No Fortran Support
17678cda7954SMatthew G. Knepley 
17688cda7954SMatthew G. Knepley   Input Parameters:
1769bb7acecfSBarry Smith + dm     - The `DM`
17708cda7954SMatthew G. Knepley . field  - The field number for the nullspace
17718cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace
17728cda7954SMatthew G. Knepley 
177320f4b53cSBarry Smith   Calling sequence of `nullsp`:
1774bb7acecfSBarry Smith + dm        - The present `DM`
1775bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1776147403d9SBarry Smith . field     - The field number in dm
1777147403d9SBarry Smith - nullSpace - The nullspace for the given field
17788cda7954SMatthew G. Knepley 
177949762cbcSSatish Balay   Level: intermediate
178049762cbcSSatish Balay 
17811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1782147403d9SBarry Smith @*/
1783a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1784d71ae5a4SJacob Faibussowitsch {
1785435a35e8SMatthew G Knepley   PetscFunctionBegin;
1786435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1787*4758e3ceSMatthew G. Knepley   PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf);
1788*4758e3ceSMatthew G. Knepley   PetscCheck(dm->nullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces");
1789435a35e8SMatthew G Knepley   dm->nullspaceConstructors[field] = nullsp;
17903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1791435a35e8SMatthew G Knepley }
1792435a35e8SMatthew G Knepley 
17938cda7954SMatthew G. Knepley /*@C
1794bb7acecfSBarry Smith   DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()`
17958cda7954SMatthew G. Knepley 
179620f4b53cSBarry Smith   Not Collective; No Fortran Support
17978cda7954SMatthew G. Knepley 
17988cda7954SMatthew G. Knepley   Input Parameters:
1799bb7acecfSBarry Smith + dm    - The `DM`
18008cda7954SMatthew G. Knepley - field - The field number for the nullspace
18018cda7954SMatthew G. Knepley 
18028cda7954SMatthew G. Knepley   Output Parameter:
18038cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace
18048cda7954SMatthew G. Knepley 
180520f4b53cSBarry Smith   Calling sequence of `nullsp`:
1806147403d9SBarry Smith + dm        - The present DM
1807147403d9SBarry Smith . origField - The field number given above, in the original DM
1808147403d9SBarry Smith . field     - The field number in dm
1809147403d9SBarry Smith - nullSpace - The nullspace for the given field
18108cda7954SMatthew G. Knepley 
181149762cbcSSatish Balay   Level: intermediate
181249762cbcSSatish Balay 
18131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
1814147403d9SBarry Smith @*/
1815a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1816d71ae5a4SJacob Faibussowitsch {
18170a50eb56SMatthew G. Knepley   PetscFunctionBegin;
18180a50eb56SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18194f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
1820*4758e3ceSMatthew G. Knepley   PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf);
1821*4758e3ceSMatthew G. Knepley   PetscCheck(dm->nullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces");
18220a50eb56SMatthew G. Knepley   *nullsp = dm->nullspaceConstructors[field];
18233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18240a50eb56SMatthew G. Knepley }
18250a50eb56SMatthew G. Knepley 
18268cda7954SMatthew G. Knepley /*@C
1827bb7acecfSBarry Smith   DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18288cda7954SMatthew G. Knepley 
182920f4b53cSBarry Smith   Logically Collective; No Fortran Support
18308cda7954SMatthew G. Knepley 
18318cda7954SMatthew G. Knepley   Input Parameters:
1832bb7acecfSBarry Smith + dm     - The `DM`
18338cda7954SMatthew G. Knepley . field  - The field number for the nullspace
18348cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace
18358cda7954SMatthew G. Knepley 
183620f4b53cSBarry Smith   Calling sequence of `nullsp`:
1837bb7acecfSBarry Smith + dm        - The present `DM`
1838bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1839147403d9SBarry Smith . field     - The field number in dm
1840147403d9SBarry Smith - nullSpace - The nullspace for the given field
18418cda7954SMatthew G. Knepley 
184249762cbcSSatish Balay   Level: intermediate
184349762cbcSSatish Balay 
18441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`,
1845bb7acecfSBarry Smith           `MatNullSpace`
1846147403d9SBarry Smith @*/
1847a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1848d71ae5a4SJacob Faibussowitsch {
1849f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1850f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
1851*4758e3ceSMatthew G. Knepley   PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf);
1852*4758e3ceSMatthew G. Knepley   PetscCheck(dm->nearnullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces");
1853f9d4088aSMatthew G. Knepley   dm->nearnullspaceConstructors[field] = nullsp;
18543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1855f9d4088aSMatthew G. Knepley }
1856f9d4088aSMatthew G. Knepley 
18578cda7954SMatthew G. Knepley /*@C
1858bb7acecfSBarry Smith   DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()`
18598cda7954SMatthew G. Knepley 
186020f4b53cSBarry Smith   Not Collective; No Fortran Support
18618cda7954SMatthew G. Knepley 
18628cda7954SMatthew G. Knepley   Input Parameters:
1863bb7acecfSBarry Smith + dm    - The `DM`
18648cda7954SMatthew G. Knepley - field - The field number for the nullspace
18658cda7954SMatthew G. Knepley 
18668cda7954SMatthew G. Knepley   Output Parameter:
18678cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace
18688cda7954SMatthew G. Knepley 
186920f4b53cSBarry Smith   Calling sequence of `nullsp`:
1870bb7acecfSBarry Smith + dm        - The present `DM`
1871bb7acecfSBarry Smith . origField - The field number given above, in the original `DM`
1872147403d9SBarry Smith . field     - The field number in dm
1873147403d9SBarry Smith - nullSpace - The nullspace for the given field
18748cda7954SMatthew G. Knepley 
187549762cbcSSatish Balay   Level: intermediate
187649762cbcSSatish Balay 
18771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`,
1878bb7acecfSBarry Smith           `MatNullSpace`, `DMCreateSuperDM()`
1879147403d9SBarry Smith @*/
1880a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace))
1881d71ae5a4SJacob Faibussowitsch {
1882f9d4088aSMatthew G. Knepley   PetscFunctionBegin;
1883f9d4088aSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
18844f572ea9SToby Isaac   PetscAssertPointer(nullsp, 3);
1885*4758e3ceSMatthew G. Knepley   PetscCheck(field < dm->Nf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= %" PetscInt_FMT " fields", field, dm->Nf);
1886*4758e3ceSMatthew G. Knepley   PetscCheck(dm->nearnullspaceConstructors, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Must call DMCreateDS() to setup nullspaces");
1887f9d4088aSMatthew G. Knepley   *nullsp = dm->nearnullspaceConstructors[field];
18883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1889f9d4088aSMatthew G. Knepley }
1890f9d4088aSMatthew G. Knepley 
18914f3b5142SJed Brown /*@C
1892bb7acecfSBarry Smith   DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()`
18934d343eeaSMatthew G Knepley 
189420f4b53cSBarry Smith   Not Collective; No Fortran Support
18954d343eeaSMatthew G Knepley 
18964d343eeaSMatthew G Knepley   Input Parameter:
1897bb7acecfSBarry Smith . dm - the `DM` object
18984d343eeaSMatthew G Knepley 
18994d343eeaSMatthew G Knepley   Output Parameters:
190020f4b53cSBarry Smith + numFields  - The number of fields (or `NULL` if not requested)
1901ce78bad3SBarry Smith . fieldNames - The name of each field (or `NULL` if not requested)
190220f4b53cSBarry Smith - fields     - The global indices for each field (or `NULL` if not requested)
19034d343eeaSMatthew G Knepley 
19044d343eeaSMatthew G Knepley   Level: intermediate
19054d343eeaSMatthew G Knepley 
1906bb7acecfSBarry Smith   Note:
190773ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with
190873ff1848SBarry Smith   `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with
1909bb7acecfSBarry Smith   `PetscFree()`.
191021c9b008SJed Brown 
191173ff1848SBarry Smith   Developer Note:
1912bb7acecfSBarry Smith   It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should
1913bb7acecfSBarry Smith   likely be removed.
1914bb7acecfSBarry Smith 
19151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`,
1916bb7acecfSBarry Smith           `DMCreateFieldDecomposition()`
19174d343eeaSMatthew G Knepley @*/
1918ce78bad3SBarry Smith PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS *fields[])
1919d71ae5a4SJacob Faibussowitsch {
192037d0c07bSMatthew G Knepley   PetscSection section, sectionGlobal;
19214d343eeaSMatthew G Knepley 
19224d343eeaSMatthew G Knepley   PetscFunctionBegin;
19234d343eeaSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
192469ca1f37SDmitry Karpeev   if (numFields) {
19254f572ea9SToby Isaac     PetscAssertPointer(numFields, 2);
192669ca1f37SDmitry Karpeev     *numFields = 0;
192769ca1f37SDmitry Karpeev   }
192837d0c07bSMatthew G Knepley   if (fieldNames) {
19294f572ea9SToby Isaac     PetscAssertPointer(fieldNames, 3);
19300298fd71SBarry Smith     *fieldNames = NULL;
193169ca1f37SDmitry Karpeev   }
193269ca1f37SDmitry Karpeev   if (fields) {
19334f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
19340298fd71SBarry Smith     *fields = NULL;
193569ca1f37SDmitry Karpeev   }
19369566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
193737d0c07bSMatthew G Knepley   if (section) {
19383a544194SStefano Zampini     PetscInt *fieldSizes, *fieldNc, **fieldIndices;
193937d0c07bSMatthew G Knepley     PetscInt  nF, f, pStart, pEnd, p;
194037d0c07bSMatthew G Knepley 
19419566063dSJacob Faibussowitsch     PetscCall(DMGetGlobalSection(dm, &sectionGlobal));
19429566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(section, &nF));
19439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices));
19449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd));
194537d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
194637d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
19479566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f]));
194837d0c07bSMatthew G Knepley     }
194937d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
195037d0c07bSMatthew G Knepley       PetscInt gdof;
195137d0c07bSMatthew G Knepley 
19529566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
195337d0c07bSMatthew G Knepley       if (gdof > 0) {
195437d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
19553a544194SStefano Zampini           PetscInt fdof, fcdof, fpdof;
195637d0c07bSMatthew G Knepley 
19579566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19589566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
19593a544194SStefano Zampini           fpdof = fdof - fcdof;
19603a544194SStefano Zampini           if (fpdof && fpdof != fieldNc[f]) {
19613a544194SStefano Zampini             /* Layout does not admit a pointwise block size */
19623a544194SStefano Zampini             fieldNc[f] = 1;
19633a544194SStefano Zampini           }
19643a544194SStefano Zampini           fieldSizes[f] += fpdof;
196537d0c07bSMatthew G Knepley         }
196637d0c07bSMatthew G Knepley       }
196737d0c07bSMatthew G Knepley     }
196837d0c07bSMatthew G Knepley     for (f = 0; f < nF; ++f) {
19699566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f]));
197037d0c07bSMatthew G Knepley       fieldSizes[f] = 0;
197137d0c07bSMatthew G Knepley     }
197237d0c07bSMatthew G Knepley     for (p = pStart; p < pEnd; ++p) {
197337d0c07bSMatthew G Knepley       PetscInt gdof, goff;
197437d0c07bSMatthew G Knepley 
19759566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof));
197637d0c07bSMatthew G Knepley       if (gdof > 0) {
19779566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff));
197837d0c07bSMatthew G Knepley         for (f = 0; f < nF; ++f) {
197937d0c07bSMatthew G Knepley           PetscInt fdof, fcdof, fc;
198037d0c07bSMatthew G Knepley 
19819566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof));
19829566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof));
1983ad540459SPierre Jolivet           for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++;
198437d0c07bSMatthew G Knepley         }
198537d0c07bSMatthew G Knepley       }
198637d0c07bSMatthew G Knepley     }
19878865f1eaSKarl Rupp     if (numFields) *numFields = nF;
198837d0c07bSMatthew G Knepley     if (fieldNames) {
19899566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fieldNames));
199037d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
199137d0c07bSMatthew G Knepley         const char *fieldName;
199237d0c07bSMatthew G Knepley 
19939566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
1994835f2295SStefano Zampini         PetscCall(PetscStrallocpy(fieldName, &(*fieldNames)[f]));
199537d0c07bSMatthew G Knepley       }
199637d0c07bSMatthew G Knepley     }
199737d0c07bSMatthew G Knepley     if (fields) {
19989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nF, fields));
199937d0c07bSMatthew G Knepley       for (f = 0; f < nF; ++f) {
20003a544194SStefano Zampini         PetscInt bs, in[2], out[2];
20013a544194SStefano Zampini 
20029566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f]));
20033a544194SStefano Zampini         in[0] = -fieldNc[f];
20043a544194SStefano Zampini         in[1] = fieldNc[f];
2005462c564dSBarry Smith         PetscCallMPI(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm)));
20063a544194SStefano Zampini         bs = (-out[0] == out[1]) ? out[1] : 1;
20079566063dSJacob Faibussowitsch         PetscCall(ISSetBlockSize((*fields)[f], bs));
200837d0c07bSMatthew G Knepley       }
200937d0c07bSMatthew G Knepley     }
20109566063dSJacob Faibussowitsch     PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices));
2011dbbe0bcdSBarry Smith   } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields);
20123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20134d343eeaSMatthew G Knepley }
20144d343eeaSMatthew G Knepley 
201516621825SDmitry Karpeev /*@C
2016bb7acecfSBarry Smith   DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems
2017a4e35b19SJacob Faibussowitsch   corresponding to different fields.
2018e7c4fc90SDmitry Karpeev 
201920f4b53cSBarry Smith   Not Collective; No Fortran Support
2020e7c4fc90SDmitry Karpeev 
2021e7c4fc90SDmitry Karpeev   Input Parameter:
2022bb7acecfSBarry Smith . dm - the `DM` object
2023e7c4fc90SDmitry Karpeev 
2024e7c4fc90SDmitry Karpeev   Output Parameters:
202520f4b53cSBarry Smith + len      - The number of fields (or `NULL` if not requested)
202620f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested)
202720f4b53cSBarry Smith . islist   - The global indices for each field (or `NULL` if not requested)
202820f4b53cSBarry Smith - dmlist   - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
2029e7c4fc90SDmitry Karpeev 
2030e7c4fc90SDmitry Karpeev   Level: intermediate
2031e7c4fc90SDmitry Karpeev 
2032a4e35b19SJacob Faibussowitsch   Notes:
2033a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding field, defined by
2034a4e35b19SJacob Faibussowitsch   `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem.
2035a4e35b19SJacob Faibussowitsch 
2036a4e35b19SJacob Faibussowitsch   The same as `DMCreateFieldIS()` but also returns a `DM` for each field.
2037a4e35b19SJacob Faibussowitsch 
203873ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
203973ff1848SBarry Smith   `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2040bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
2041e7c4fc90SDmitry Karpeev 
20428d9ecca5SBarry Smith   Fortran Notes:
20438d9ecca5SBarry Smith   Use the declarations
20448d9ecca5SBarry Smith .vb
20458d9ecca5SBarry Smith   character(80), pointer :: namelist(:)
20468d9ecca5SBarry Smith   IS, pointer :: islist(:)
20478d9ecca5SBarry Smith   DM, pointer :: dmlist(:)
20488d9ecca5SBarry Smith .ve
20498d9ecca5SBarry Smith 
20508d9ecca5SBarry Smith   `namelist` must be provided, `islist` may be `PETSC_NULL_IS_POINTER` and `dmlist` may be `PETSC_NULL_DM_POINTER`
20518d9ecca5SBarry Smith 
20528d9ecca5SBarry Smith   Use `DMDestroyFieldDecomposition()` to free the returned objects
20538d9ecca5SBarry Smith 
205460225df5SJacob Faibussowitsch   Developer Notes:
2055bb7acecfSBarry Smith   It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing.
2056bb7acecfSBarry Smith 
205773ff1848SBarry Smith   Unlike  `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the
205873ff1848SBarry Smith   decomposition is computed.
205973ff1848SBarry Smith 
206073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
2061e7c4fc90SDmitry Karpeev @*/
2062ce78bad3SBarry Smith PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS *islist[], DM *dmlist[])
2063d71ae5a4SJacob Faibussowitsch {
2064e7c4fc90SDmitry Karpeev   PetscFunctionBegin;
2065e7c4fc90SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
20668865f1eaSKarl Rupp   if (len) {
20674f572ea9SToby Isaac     PetscAssertPointer(len, 2);
20688865f1eaSKarl Rupp     *len = 0;
20698865f1eaSKarl Rupp   }
20708865f1eaSKarl Rupp   if (namelist) {
20714f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
2072ea78f98cSLisandro Dalcin     *namelist = NULL;
20738865f1eaSKarl Rupp   }
20748865f1eaSKarl Rupp   if (islist) {
20754f572ea9SToby Isaac     PetscAssertPointer(islist, 4);
2076ea78f98cSLisandro Dalcin     *islist = NULL;
20778865f1eaSKarl Rupp   }
20788865f1eaSKarl Rupp   if (dmlist) {
20794f572ea9SToby Isaac     PetscAssertPointer(dmlist, 5);
2080ea78f98cSLisandro Dalcin     *dmlist = NULL;
20818865f1eaSKarl Rupp   }
2082f3f0edfdSDmitry Karpeev   /*
2083f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2084f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2085f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2086f3f0edfdSDmitry Karpeev    */
20877a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
208816621825SDmitry Karpeev   if (!dm->ops->createfielddecomposition) {
2089435a35e8SMatthew G Knepley     PetscSection section;
2090435a35e8SMatthew G Knepley     PetscInt     numFields, f;
2091435a35e8SMatthew G Knepley 
20929566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
20939566063dSJacob Faibussowitsch     if (section) PetscCall(PetscSectionGetNumFields(section, &numFields));
2094435a35e8SMatthew G Knepley     if (section && numFields && dm->ops->createsubdm) {
2095f25d98f1SMatthew G. Knepley       if (len) *len = numFields;
20969566063dSJacob Faibussowitsch       if (namelist) PetscCall(PetscMalloc1(numFields, namelist));
20979566063dSJacob Faibussowitsch       if (islist) PetscCall(PetscMalloc1(numFields, islist));
20989566063dSJacob Faibussowitsch       if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist));
2099435a35e8SMatthew G Knepley       for (f = 0; f < numFields; ++f) {
2100435a35e8SMatthew G Knepley         const char *fieldName;
2101435a35e8SMatthew G Knepley 
21029566063dSJacob Faibussowitsch         PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL));
210303dc3394SMatthew G. Knepley         if (namelist) {
21049566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetFieldName(section, f, &fieldName));
2105835f2295SStefano Zampini           PetscCall(PetscStrallocpy(fieldName, &(*namelist)[f]));
2106435a35e8SMatthew G Knepley         }
210703dc3394SMatthew G. Knepley       }
2108435a35e8SMatthew G Knepley     } else {
21099566063dSJacob Faibussowitsch       PetscCall(DMCreateFieldIS(dm, len, namelist, islist));
2110e7c4fc90SDmitry Karpeev       /* By default there are no DMs associated with subproblems. */
21110298fd71SBarry Smith       if (dmlist) *dmlist = NULL;
2112e7c4fc90SDmitry Karpeev     }
2113dbbe0bcdSBarry Smith   } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist);
21143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
211516621825SDmitry Karpeev }
211616621825SDmitry Karpeev 
21175d83a8b1SBarry Smith /*@
211820f4b53cSBarry Smith   DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in.
211920f4b53cSBarry Smith   The fields are defined by `DMCreateFieldIS()`.
2120435a35e8SMatthew G Knepley 
2121435a35e8SMatthew G Knepley   Not collective
2122435a35e8SMatthew G Knepley 
2123435a35e8SMatthew G Knepley   Input Parameters:
2124bb7acecfSBarry Smith + dm        - The `DM` object
2125bb7acecfSBarry Smith . numFields - The number of fields to select
21262adcc780SMatthew G. Knepley - fields    - The field numbers of the selected fields
2127435a35e8SMatthew G Knepley 
2128435a35e8SMatthew G Knepley   Output Parameters:
2129b6971eaeSBarry Smith + is    - The global indices for all the degrees of freedom in the new sub `DM`, use `NULL` if not needed
2130b6971eaeSBarry Smith - subdm - The `DM` for the subproblem, use `NULL` if not needed
2131435a35e8SMatthew G Knepley 
213220f4b53cSBarry Smith   Level: intermediate
213320f4b53cSBarry Smith 
2134bb7acecfSBarry Smith   Note:
2135bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21365d3b26e6SMatthew G. Knepley 
213760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
2138435a35e8SMatthew G Knepley @*/
2139d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm)
2140d71ae5a4SJacob Faibussowitsch {
2141435a35e8SMatthew G Knepley   PetscFunctionBegin;
2142435a35e8SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
21434f572ea9SToby Isaac   PetscAssertPointer(fields, 3);
21444f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 4);
21454f572ea9SToby Isaac   if (subdm) PetscAssertPointer(subdm, 5);
2146dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm);
21473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2148435a35e8SMatthew G Knepley }
2149435a35e8SMatthew G Knepley 
21502adcc780SMatthew G. Knepley /*@C
2151ce78bad3SBarry Smith   DMCreateSuperDM - Returns an arrays of `IS` and a single `DM` encapsulating a superproblem defined by multiple `DM`s passed in.
21522adcc780SMatthew G. Knepley 
21532adcc780SMatthew G. Knepley   Not collective
21542adcc780SMatthew G. Knepley 
2155d8d19677SJose E. Roman   Input Parameters:
2156bb7acecfSBarry Smith + dms - The `DM` objects
2157bb7acecfSBarry Smith - n   - The number of `DM`s
21582adcc780SMatthew G. Knepley 
21592adcc780SMatthew G. Knepley   Output Parameters:
2160ce78bad3SBarry Smith + is      - The global indices for each of subproblem within the super `DM`, or `NULL`, its length is `n`
2161bb7acecfSBarry Smith - superdm - The `DM` for the superproblem
21622adcc780SMatthew G. Knepley 
216320f4b53cSBarry Smith   Level: intermediate
216420f4b53cSBarry Smith 
2165bb7acecfSBarry Smith   Note:
2166bb7acecfSBarry Smith   You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed
21675d3b26e6SMatthew G. Knepley 
216873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()`
21692adcc780SMatthew G. Knepley @*/
21705d83a8b1SBarry Smith PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS *is[], DM *superdm)
2171d71ae5a4SJacob Faibussowitsch {
21722adcc780SMatthew G. Knepley   PetscInt i;
21732adcc780SMatthew G. Knepley 
21742adcc780SMatthew G. Knepley   PetscFunctionBegin;
21754f572ea9SToby Isaac   PetscAssertPointer(dms, 1);
2176ad540459SPierre Jolivet   for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1);
21774f572ea9SToby Isaac   if (is) PetscAssertPointer(is, 3);
21784f572ea9SToby Isaac   PetscAssertPointer(superdm, 4);
2179bb7acecfSBarry Smith   PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n);
2180bb7acecfSBarry Smith   if (n) {
2181b9d85ea2SLisandro Dalcin     DM dm = dms[0];
218200045ab3SPierre Jolivet     PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name);
2183dbbe0bcdSBarry Smith     PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm));
21842adcc780SMatthew G. Knepley   }
21853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21862adcc780SMatthew G. Knepley }
21872adcc780SMatthew G. Knepley 
218816621825SDmitry Karpeev /*@C
2189a4e35b19SJacob Faibussowitsch   DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a
2190a4e35b19SJacob Faibussowitsch   problem into subproblems corresponding to restrictions to pairs of nested subdomains.
219116621825SDmitry Karpeev 
219220f4b53cSBarry Smith   Not Collective
219316621825SDmitry Karpeev 
219416621825SDmitry Karpeev   Input Parameter:
2195bb7acecfSBarry Smith . dm - the `DM` object
219616621825SDmitry Karpeev 
219716621825SDmitry Karpeev   Output Parameters:
2198ce78bad3SBarry Smith + n           - The number of subproblems in the domain decomposition (or `NULL` if not requested), also the length of the four arrays below
219920f4b53cSBarry Smith . namelist    - The name for each subdomain (or `NULL` if not requested)
220073ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested)
220173ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested)
220273ff1848SBarry Smith - dmlist      - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined)
220316621825SDmitry Karpeev 
220416621825SDmitry Karpeev   Level: intermediate
220516621825SDmitry Karpeev 
220673ff1848SBarry Smith   Notes:
2207a4e35b19SJacob Faibussowitsch   Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the
2208a4e35b19SJacob Faibussowitsch   dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping
2209a4e35b19SJacob Faibussowitsch   covering, while outer subdomains can overlap.
2210a4e35b19SJacob Faibussowitsch 
2211a4e35b19SJacob Faibussowitsch   The optional list of `DM`s define a `DM` for each subproblem.
2212a4e35b19SJacob Faibussowitsch 
221373ff1848SBarry Smith   The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with
221473ff1848SBarry Smith   `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`,
2215bb7acecfSBarry Smith   and all of the arrays should be freed with `PetscFree()`.
221616621825SDmitry Karpeev 
2217a4e35b19SJacob Faibussowitsch   Developer Notes:
221820f4b53cSBarry Smith   The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains?
2219bb7acecfSBarry Smith 
222073ff1848SBarry Smith   The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`.
222173ff1848SBarry Smith 
222273ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`,
222373ff1848SBarry Smith           `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`
222416621825SDmitry Karpeev @*/
2225ce78bad3SBarry Smith PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS *innerislist[], IS *outerislist[], DM *dmlist[])
2226d71ae5a4SJacob Faibussowitsch {
2227be081cd6SPeter Brune   DMSubDomainHookLink link;
2228be081cd6SPeter Brune   PetscInt            i, l;
222916621825SDmitry Karpeev 
223016621825SDmitry Karpeev   PetscFunctionBegin;
223116621825SDmitry Karpeev   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
22329371c9d4SSatish Balay   if (n) {
22334f572ea9SToby Isaac     PetscAssertPointer(n, 2);
22349371c9d4SSatish Balay     *n = 0;
22359371c9d4SSatish Balay   }
22369371c9d4SSatish Balay   if (namelist) {
22374f572ea9SToby Isaac     PetscAssertPointer(namelist, 3);
22389371c9d4SSatish Balay     *namelist = NULL;
22399371c9d4SSatish Balay   }
22409371c9d4SSatish Balay   if (innerislist) {
22414f572ea9SToby Isaac     PetscAssertPointer(innerislist, 4);
22429371c9d4SSatish Balay     *innerislist = NULL;
22439371c9d4SSatish Balay   }
22449371c9d4SSatish Balay   if (outerislist) {
22454f572ea9SToby Isaac     PetscAssertPointer(outerislist, 5);
22469371c9d4SSatish Balay     *outerislist = NULL;
22479371c9d4SSatish Balay   }
22489371c9d4SSatish Balay   if (dmlist) {
22494f572ea9SToby Isaac     PetscAssertPointer(dmlist, 6);
22509371c9d4SSatish Balay     *dmlist = NULL;
22519371c9d4SSatish Balay   }
2252f3f0edfdSDmitry Karpeev   /*
2253f3f0edfdSDmitry Karpeev    Is it a good idea to apply the following check across all impls?
2254f3f0edfdSDmitry Karpeev    Perhaps some impls can have a well-defined decomposition before DMSetUp?
2255f3f0edfdSDmitry Karpeev    This, however, follows the general principle that accessors are not well-behaved until the object is set up.
2256f3f0edfdSDmitry Karpeev    */
22577a8be351SBarry Smith   PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp");
225816621825SDmitry Karpeev   if (dm->ops->createdomaindecomposition) {
2259dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist);
226014a18fd3SPeter Brune     /* copy subdomain hooks and context over to the subdomain DMs */
2261f891f5b9SPatrick Sanan     if (dmlist && *dmlist) {
2262be081cd6SPeter Brune       for (i = 0; i < l; i++) {
2263be081cd6SPeter Brune         for (link = dm->subdomainhook; link; link = link->next) {
22649566063dSJacob Faibussowitsch           if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx));
2265be081cd6SPeter Brune         }
2266648262bbSPatrick Sanan         if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx;
2267e7c4fc90SDmitry Karpeev       }
226814a18fd3SPeter Brune     }
2269bb7acecfSBarry Smith     if (n) *n = l;
227014a18fd3SPeter Brune   }
22713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2272e30e807fSPeter Brune }
2273e30e807fSPeter Brune 
2274e30e807fSPeter Brune /*@C
227573ff1848SBarry Smith   DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with
227673ff1848SBarry Smith   `DMCreateDomainDecomposition()`
2277e30e807fSPeter Brune 
227820f4b53cSBarry Smith   Not Collective
2279e30e807fSPeter Brune 
2280e30e807fSPeter Brune   Input Parameters:
2281bb7acecfSBarry Smith + dm     - the `DM` object
228273ff1848SBarry Smith . n      - the number of subdomains
2283e30e807fSPeter Brune - subdms - the local subdomains
2284e30e807fSPeter Brune 
2285e30e807fSPeter Brune   Output Parameters:
22866b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain
2287e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain
2288e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts)
2289e30e807fSPeter Brune 
229020f4b53cSBarry Smith   Level: developer
229120f4b53cSBarry Smith 
2292bb7acecfSBarry Smith   Note:
2293bb7acecfSBarry Smith   This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution
2294e30e807fSPeter Brune   of general nonlinear problems with overlapping subdomain methods.  While merely having index sets that enable subsets
2295e30e807fSPeter Brune   of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of
2296e30e807fSPeter Brune   solution and residual data.
2297e30e807fSPeter Brune 
229873ff1848SBarry Smith   Developer Note:
2299a4e35b19SJacob Faibussowitsch   Can the subdms input be anything or are they exactly the `DM` obtained from
2300a4e35b19SJacob Faibussowitsch   `DMCreateDomainDecomposition()`?
2301bb7acecfSBarry Smith 
23021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`
2303e30e807fSPeter Brune @*/
23045d83a8b1SBarry Smith PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter *iscat[], VecScatter *oscat[], VecScatter *gscat[])
2305d71ae5a4SJacob Faibussowitsch {
2306e30e807fSPeter Brune   PetscFunctionBegin;
2307e30e807fSPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23084f572ea9SToby Isaac   PetscAssertPointer(subdms, 3);
2309dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat);
23103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2311e7c4fc90SDmitry Karpeev }
2312e7c4fc90SDmitry Karpeev 
231347c6ae99SBarry Smith /*@
2314bb7acecfSBarry Smith   DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh
231547c6ae99SBarry Smith 
231620f4b53cSBarry Smith   Collective
231747c6ae99SBarry Smith 
2318d8d19677SJose E. Roman   Input Parameters:
2319bb7acecfSBarry Smith + dm   - the `DM` object
2320bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
232147c6ae99SBarry Smith 
232247c6ae99SBarry Smith   Output Parameter:
232320f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL`
2324ae0a1c52SMatthew G Knepley 
232520f4b53cSBarry Smith   Options Database Key:
2326412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex
2327412e9a14SMatthew G. Knepley 
232847c6ae99SBarry Smith   Level: developer
232947c6ae99SBarry Smith 
233020f4b53cSBarry Smith   Note:
233120f4b53cSBarry Smith   If no refinement was done, the return value is `NULL`
233220f4b53cSBarry Smith 
233373ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
233473ff1848SBarry Smith           `DMRefineHookAdd()`, `DMRefineHookRemove()`
233547c6ae99SBarry Smith @*/
2336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf)
2337d71ae5a4SJacob Faibussowitsch {
2338c833c3b5SJed Brown   DMRefineHookLink link;
233947c6ae99SBarry Smith 
234047c6ae99SBarry Smith   PetscFunctionBegin;
2341732e2eb9SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
23429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0));
2343dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, refine, comm, dmf);
23444057135bSMatthew G Knepley   if (*dmf) {
234543842a1eSJed Brown     (*dmf)->ops->creatematrix = dm->ops->creatematrix;
23468865f1eaSKarl Rupp 
23479566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf));
23488865f1eaSKarl Rupp 
2349644e2e5bSBarry Smith     (*dmf)->ctx       = dm->ctx;
23500598a293SJed Brown     (*dmf)->leveldown = dm->leveldown;
2351656b349aSBarry Smith     (*dmf)->levelup   = dm->levelup + 1;
23528865f1eaSKarl Rupp 
23539566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmf, dm->mattype));
2354c833c3b5SJed Brown     for (link = dm->refinehook; link; link = link->next) {
23551baa6e33SBarry Smith       if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx));
2356c833c3b5SJed Brown     }
2357c833c3b5SJed Brown   }
23589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0));
23593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2360c833c3b5SJed Brown }
2361c833c3b5SJed Brown 
2362bb9467b5SJed Brown /*@C
2363c833c3b5SJed Brown   DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid
2364c833c3b5SJed Brown 
236520f4b53cSBarry Smith   Logically Collective; No Fortran Support
2366c833c3b5SJed Brown 
23674165533cSJose E. Roman   Input Parameters:
2368bb7acecfSBarry Smith + coarse     - `DM` on which to run a hook when interpolating to a finer level
2369bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level
2370f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`)
237120f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2372c833c3b5SJed Brown 
237320f4b53cSBarry Smith   Calling sequence of `refinehook`:
2374bb7acecfSBarry Smith + coarse - coarse level `DM`
2375bb7acecfSBarry Smith . fine   - fine level `DM` to interpolate problem to
2376c833c3b5SJed Brown - ctx    - optional user-defined function context
2377c833c3b5SJed Brown 
237820f4b53cSBarry Smith   Calling sequence of `interphook`:
2379bb7acecfSBarry Smith + coarse - coarse level `DM`
2380c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid
2381bb7acecfSBarry Smith . fine   - fine level `DM` to update
2382c833c3b5SJed Brown - ctx    - optional user-defined function context
2383c833c3b5SJed Brown 
2384c833c3b5SJed Brown   Level: advanced
2385c833c3b5SJed Brown 
2386c833c3b5SJed Brown   Notes:
2387bb7acecfSBarry Smith   This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be
2388bb7acecfSBarry Smith   passed to fine grids while grid sequencing.
2389bb7acecfSBarry Smith 
2390bb7acecfSBarry Smith   The actual interpolation is done when `DMInterpolate()` is called.
2391c833c3b5SJed Brown 
2392c833c3b5SJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
2393c833c3b5SJed Brown 
23941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2395c833c3b5SJed Brown @*/
2396a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx)
2397d71ae5a4SJacob Faibussowitsch {
2398c833c3b5SJed Brown   DMRefineHookLink link, *p;
2399c833c3b5SJed Brown 
2400c833c3b5SJed Brown   PetscFunctionBegin;
2401c833c3b5SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24023d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
24033ba16761SJacob Faibussowitsch     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
24043d8e3701SJed Brown   }
24059566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2406c833c3b5SJed Brown   link->refinehook = refinehook;
2407c833c3b5SJed Brown   link->interphook = interphook;
2408c833c3b5SJed Brown   link->ctx        = ctx;
24090298fd71SBarry Smith   link->next       = NULL;
2410c833c3b5SJed Brown   *p               = link;
24113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2412c833c3b5SJed Brown }
2413c833c3b5SJed Brown 
24143d8e3701SJed Brown /*@C
2415bb7acecfSBarry Smith   DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating
2416bb7acecfSBarry Smith   a nonlinear problem to a finer grid
24173d8e3701SJed Brown 
241820f4b53cSBarry Smith   Logically Collective; No Fortran Support
24193d8e3701SJed Brown 
24204165533cSJose E. Roman   Input Parameters:
2421bb7acecfSBarry Smith + coarse     - the `DM` on which to run a hook when restricting to a coarser level
2422bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level
2423bb7acecfSBarry Smith . interphook - function to run to update data on finer levels
242420f4b53cSBarry Smith - ctx        - [optional] user-defined context for provide data for the hooks (may be `NULL`)
24253d8e3701SJed Brown 
24263d8e3701SJed Brown   Level: advanced
24273d8e3701SJed Brown 
2428bb7acecfSBarry Smith   Note:
24293d8e3701SJed Brown   This function does nothing if the hook is not in the list.
24303d8e3701SJed Brown 
24311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
24323d8e3701SJed Brown @*/
2433d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx)
2434d71ae5a4SJacob Faibussowitsch {
24353d8e3701SJed Brown   DMRefineHookLink link, *p;
24363d8e3701SJed Brown 
24373d8e3701SJed Brown   PetscFunctionBegin;
24383d8e3701SJed Brown   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
24393d8e3701SJed Brown   for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */
24403d8e3701SJed Brown     if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) {
24413d8e3701SJed Brown       link = *p;
24423d8e3701SJed Brown       *p   = link->next;
24439566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
24443d8e3701SJed Brown       break;
24453d8e3701SJed Brown     }
24463d8e3701SJed Brown   }
24473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24483d8e3701SJed Brown }
24493d8e3701SJed Brown 
2450c833c3b5SJed Brown /*@
2451bb7acecfSBarry Smith   DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()`
2452c833c3b5SJed Brown 
2453c833c3b5SJed Brown   Collective if any hooks are
2454c833c3b5SJed Brown 
24554165533cSJose E. Roman   Input Parameters:
2456bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base
2457bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()`
2458bb7acecfSBarry Smith - fine   - finer `DM` to update
2459c833c3b5SJed Brown 
2460c833c3b5SJed Brown   Level: developer
2461c833c3b5SJed Brown 
246273ff1848SBarry Smith   Developer Note:
2463bb7acecfSBarry Smith   This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an
2464bb7acecfSBarry Smith   an API with consistent terminology.
2465bb7acecfSBarry Smith 
24661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()`
2467c833c3b5SJed Brown @*/
2468d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine)
2469d71ae5a4SJacob Faibussowitsch {
2470c833c3b5SJed Brown   DMRefineHookLink link;
2471c833c3b5SJed Brown 
2472c833c3b5SJed Brown   PetscFunctionBegin;
2473c833c3b5SJed Brown   for (link = fine->refinehook; link; link = link->next) {
24741baa6e33SBarry Smith     if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx));
24754057135bSMatthew G Knepley   }
24763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
247747c6ae99SBarry Smith }
247847c6ae99SBarry Smith 
2479eb3f98d2SBarry Smith /*@
24801f3379b2SToby Isaac   DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh.
24811f3379b2SToby Isaac 
248220f4b53cSBarry Smith   Collective
24831f3379b2SToby Isaac 
24844165533cSJose E. Roman   Input Parameters:
2485bb7acecfSBarry Smith + coarse    - coarse `DM`
2486bb7acecfSBarry Smith . fine      - fine `DM`
2487bb7acecfSBarry Smith . interp    - (optional) the matrix computed by `DMCreateInterpolation()`.  Implementations may not need this, but if it
2488bb7acecfSBarry Smith             is available it can avoid some recomputation.  If it is provided, `MatInterpolate()` will be used if
2489bb7acecfSBarry Smith             the coarse `DM` does not have a specialized implementation.
24901f3379b2SToby Isaac - coarseSol - solution on the coarse mesh
24911f3379b2SToby Isaac 
24924165533cSJose E. Roman   Output Parameter:
24931f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh
24941f3379b2SToby Isaac 
24951f3379b2SToby Isaac   Level: developer
24961f3379b2SToby Isaac 
2497bb7acecfSBarry Smith   Note:
2498bb7acecfSBarry Smith   This function exists because the interpolation of a solution vector between meshes is not always a linear
24991f3379b2SToby Isaac   map.  For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed
25001f3379b2SToby Isaac   out of the solution vector.  Or if interpolation is inherently a nonlinear operation, such as a method using
25011f3379b2SToby Isaac   slope-limiting reconstruction.
25021f3379b2SToby Isaac 
250373ff1848SBarry Smith   Developer Note:
2504bb7acecfSBarry Smith   This doesn't just interpolate "solutions" so its API name is questionable.
2505bb7acecfSBarry Smith 
25061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()`
25071f3379b2SToby Isaac @*/
2508d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol)
2509d71ae5a4SJacob Faibussowitsch {
25101f3379b2SToby Isaac   PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL;
25111f3379b2SToby Isaac 
25121f3379b2SToby Isaac   PetscFunctionBegin;
25131f3379b2SToby Isaac   PetscValidHeaderSpecific(coarse, DM_CLASSID, 1);
25141f3379b2SToby Isaac   if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3);
25151f3379b2SToby Isaac   PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4);
25161f3379b2SToby Isaac   PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5);
25171f3379b2SToby Isaac 
25189566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol));
25191f3379b2SToby Isaac   if (interpsol) {
25209566063dSJacob Faibussowitsch     PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol));
25211f3379b2SToby Isaac   } else if (interp) {
25229566063dSJacob Faibussowitsch     PetscCall(MatInterpolate(interp, coarseSol, fineSol));
252398921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name);
25243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25251f3379b2SToby Isaac }
25261f3379b2SToby Isaac 
25271f3379b2SToby Isaac /*@
2528bb7acecfSBarry Smith   DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`.
2529eb3f98d2SBarry Smith 
2530eb3f98d2SBarry Smith   Not Collective
2531eb3f98d2SBarry Smith 
2532eb3f98d2SBarry Smith   Input Parameter:
2533bb7acecfSBarry Smith . dm - the `DM` object
2534eb3f98d2SBarry Smith 
2535eb3f98d2SBarry Smith   Output Parameter:
2536eb3f98d2SBarry Smith . level - number of refinements
2537eb3f98d2SBarry Smith 
2538eb3f98d2SBarry Smith   Level: developer
2539eb3f98d2SBarry Smith 
2540bb7acecfSBarry Smith   Note:
2541bb7acecfSBarry Smith   This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver.
2542bb7acecfSBarry Smith 
25431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2544eb3f98d2SBarry Smith @*/
2545d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level)
2546d71ae5a4SJacob Faibussowitsch {
2547eb3f98d2SBarry Smith   PetscFunctionBegin;
2548eb3f98d2SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2549eb3f98d2SBarry Smith   *level = dm->levelup;
25503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2551eb3f98d2SBarry Smith }
2552eb3f98d2SBarry Smith 
2553fef3a512SBarry Smith /*@
2554bb7acecfSBarry Smith   DMSetRefineLevel - Sets the number of refinements that have generated this `DM`.
2555fef3a512SBarry Smith 
2556fef3a512SBarry Smith   Not Collective
2557fef3a512SBarry Smith 
2558d8d19677SJose E. Roman   Input Parameters:
2559bb7acecfSBarry Smith + dm    - the `DM` object
2560fef3a512SBarry Smith - level - number of refinements
2561fef3a512SBarry Smith 
2562fef3a512SBarry Smith   Level: advanced
2563fef3a512SBarry Smith 
256495452b02SPatrick Sanan   Notes:
2565bb7acecfSBarry Smith   This value is used by `PCMG` to determine how many multigrid levels to use
2566fef3a512SBarry Smith 
2567bb7acecfSBarry Smith   The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine.
2568bb7acecfSBarry Smith 
25691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
2570fef3a512SBarry Smith @*/
2571d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level)
2572d71ae5a4SJacob Faibussowitsch {
2573fef3a512SBarry Smith   PetscFunctionBegin;
2574fef3a512SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2575fef3a512SBarry Smith   dm->levelup = level;
25763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2577fef3a512SBarry Smith }
2578fef3a512SBarry Smith 
2579d410b0cfSMatthew G. Knepley /*@
2580bb7acecfSBarry Smith   DMExtrude - Extrude a `DM` object from a surface
2581d410b0cfSMatthew G. Knepley 
258220f4b53cSBarry Smith   Collective
2583d410b0cfSMatthew G. Knepley 
2584f1a722f8SMatthew G. Knepley   Input Parameters:
2585bb7acecfSBarry Smith + dm     - the `DM` object
2586d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers
2587d410b0cfSMatthew G. Knepley 
2588d410b0cfSMatthew G. Knepley   Output Parameter:
258920f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL`
2590d410b0cfSMatthew G. Knepley 
2591d410b0cfSMatthew G. Knepley   Level: developer
2592d410b0cfSMatthew G. Knepley 
259320f4b53cSBarry Smith   Note:
259420f4b53cSBarry Smith   If no extrusion was done, the return value is `NULL`
259520f4b53cSBarry Smith 
25961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`
2597d410b0cfSMatthew G. Knepley @*/
2598d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme)
2599d71ae5a4SJacob Faibussowitsch {
2600d410b0cfSMatthew G. Knepley   PetscFunctionBegin;
2601d410b0cfSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2602dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, extrude, layers, dme);
2603d410b0cfSMatthew G. Knepley   if (*dme) {
2604d410b0cfSMatthew G. Knepley     (*dme)->ops->creatematrix = dm->ops->creatematrix;
26059566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme));
2606d410b0cfSMatthew G. Knepley     (*dme)->ctx = dm->ctx;
26079566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dme, dm->mattype));
2608d410b0cfSMatthew G. Knepley   }
26093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2610d410b0cfSMatthew G. Knepley }
2611d410b0cfSMatthew G. Knepley 
2612d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm)
2613d71ae5a4SJacob Faibussowitsch {
2614ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2615ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26164f572ea9SToby Isaac   PetscAssertPointer(tdm, 2);
2617ca3d3a14SMatthew G. Knepley   *tdm = dm->transformDM;
26183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2619ca3d3a14SMatthew G. Knepley }
2620ca3d3a14SMatthew G. Knepley 
2621d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv)
2622d71ae5a4SJacob Faibussowitsch {
2623ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2624ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26254f572ea9SToby Isaac   PetscAssertPointer(tv, 2);
2626ca3d3a14SMatthew G. Knepley   *tv = dm->transform;
26273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2628ca3d3a14SMatthew G. Knepley }
2629ca3d3a14SMatthew G. Knepley 
2630ca3d3a14SMatthew G. Knepley /*@
2631bb7acecfSBarry Smith   DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors
2632ca3d3a14SMatthew G. Knepley 
2633ca3d3a14SMatthew G. Knepley   Input Parameter:
263420f4b53cSBarry Smith . dm - The `DM`
2635ca3d3a14SMatthew G. Knepley 
2636ca3d3a14SMatthew G. Knepley   Output Parameter:
263720f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done
2638ca3d3a14SMatthew G. Knepley 
2639ca3d3a14SMatthew G. Knepley   Level: developer
2640ca3d3a14SMatthew G. Knepley 
26411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()`
2642ca3d3a14SMatthew G. Knepley @*/
2643d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg)
2644d71ae5a4SJacob Faibussowitsch {
2645ca3d3a14SMatthew G. Knepley   Vec tv;
2646ca3d3a14SMatthew G. Knepley 
2647ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2648ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
26494f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
26509566063dSJacob Faibussowitsch   PetscCall(DMGetBasisTransformVec_Internal(dm, &tv));
2651ca3d3a14SMatthew G. Knepley   *flg = tv ? PETSC_TRUE : PETSC_FALSE;
26523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2653ca3d3a14SMatthew G. Knepley }
2654ca3d3a14SMatthew G. Knepley 
2655d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm)
2656d71ae5a4SJacob Faibussowitsch {
2657ca3d3a14SMatthew G. Knepley   PetscSection s, ts;
2658ca3d3a14SMatthew G. Knepley   PetscScalar *ta;
2659ca3d3a14SMatthew G. Knepley   PetscInt     cdim, pStart, pEnd, p, Nf, f, Nc, dof;
2660ca3d3a14SMatthew G. Knepley 
2661ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
26629566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &cdim));
26639566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
26649566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
26659566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetNumFields(s, &Nf));
26669566063dSJacob Faibussowitsch   PetscCall(DMClone(dm, &dm->transformDM));
26679566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm->transformDM, &ts));
26689566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(ts, Nf));
26699566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(ts, pStart, pEnd));
2670ca3d3a14SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
26719566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetFieldComponents(s, f, &Nc));
2672ca3d3a14SMatthew G. Knepley     /* We could start to label fields by their transformation properties */
2673ca3d3a14SMatthew G. Knepley     if (Nc != cdim) continue;
2674ca3d3a14SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
26759566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(s, p, f, &dof));
2676ca3d3a14SMatthew G. Knepley       if (!dof) continue;
26779566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim)));
26789566063dSJacob Faibussowitsch       PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim)));
2679ca3d3a14SMatthew G. Knepley     }
2680ca3d3a14SMatthew G. Knepley   }
26819566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(ts));
26829566063dSJacob Faibussowitsch   PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform));
26839566063dSJacob Faibussowitsch   PetscCall(VecGetArray(dm->transform, &ta));
2684ca3d3a14SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
2685ca3d3a14SMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
26869566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof));
2687ca3d3a14SMatthew G. Knepley       if (dof) {
2688ca3d3a14SMatthew G. Knepley         PetscReal          x[3] = {0.0, 0.0, 0.0};
2689ca3d3a14SMatthew G. Knepley         PetscScalar       *tva;
2690ca3d3a14SMatthew G. Knepley         const PetscScalar *A;
2691ca3d3a14SMatthew G. Knepley 
2692ca3d3a14SMatthew G. Knepley         /* TODO Get quadrature point for this dual basis vector for coordinate */
26939566063dSJacob Faibussowitsch         PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx));
26949566063dSJacob Faibussowitsch         PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva));
26959566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim)));
2696ca3d3a14SMatthew G. Knepley       }
2697ca3d3a14SMatthew G. Knepley     }
2698ca3d3a14SMatthew G. Knepley   }
26999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(dm->transform, &ta));
27003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2701ca3d3a14SMatthew G. Knepley }
2702ca3d3a14SMatthew G. Knepley 
2703d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm)
2704d71ae5a4SJacob Faibussowitsch {
2705ca3d3a14SMatthew G. Knepley   PetscFunctionBegin;
2706ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2707ca3d3a14SMatthew G. Knepley   PetscValidHeaderSpecific(newdm, DM_CLASSID, 2);
2708ca3d3a14SMatthew G. Knepley   newdm->transformCtx       = dm->transformCtx;
2709ca3d3a14SMatthew G. Knepley   newdm->transformSetUp     = dm->transformSetUp;
2710ca3d3a14SMatthew G. Knepley   newdm->transformDestroy   = NULL;
2711ca3d3a14SMatthew G. Knepley   newdm->transformGetMatrix = dm->transformGetMatrix;
27129566063dSJacob Faibussowitsch   if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm));
27133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2714ca3d3a14SMatthew G. Knepley }
2715ca3d3a14SMatthew G. Knepley 
2716bb9467b5SJed Brown /*@C
2717bb7acecfSBarry Smith   DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called
2718baf369e7SPeter Brune 
271920f4b53cSBarry Smith   Logically Collective
2720baf369e7SPeter Brune 
27214165533cSJose E. Roman   Input Parameters:
2722bb7acecfSBarry Smith + dm        - the `DM`
2723bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()`
2724bb7acecfSBarry Smith . endhook   - function to run after `DMGlobalToLocalEnd()` has completed
272520f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2726baf369e7SPeter Brune 
272720f4b53cSBarry Smith   Calling sequence of `beginhook`:
2728a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2729baf369e7SPeter Brune . g    - global vector
2730baf369e7SPeter Brune . mode - mode
2731baf369e7SPeter Brune . l    - local vector
2732baf369e7SPeter Brune - ctx  - optional user-defined function context
2733baf369e7SPeter Brune 
273420f4b53cSBarry Smith   Calling sequence of `endhook`:
2735a4e35b19SJacob Faibussowitsch + dm   - global `DM`
2736a4e35b19SJacob Faibussowitsch . g    - global vector
2737a4e35b19SJacob Faibussowitsch . mode - mode
2738a4e35b19SJacob Faibussowitsch . l    - local vector
2739baf369e7SPeter Brune - ctx  - optional user-defined function context
2740baf369e7SPeter Brune 
2741baf369e7SPeter Brune   Level: advanced
2742baf369e7SPeter Brune 
2743bb7acecfSBarry Smith   Note:
2744bb7acecfSBarry Smith   The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector.
2745bb7acecfSBarry Smith 
27461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2747baf369e7SPeter Brune @*/
2748a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx)
2749d71ae5a4SJacob Faibussowitsch {
2750baf369e7SPeter Brune   DMGlobalToLocalHookLink link, *p;
2751baf369e7SPeter Brune 
2752baf369e7SPeter Brune   PetscFunctionBegin;
2753baf369e7SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2754baf369e7SPeter Brune   for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
27559566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2756baf369e7SPeter Brune   link->beginhook = beginhook;
2757baf369e7SPeter Brune   link->endhook   = endhook;
2758baf369e7SPeter Brune   link->ctx       = ctx;
27590298fd71SBarry Smith   link->next      = NULL;
2760baf369e7SPeter Brune   *p              = link;
27613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2762baf369e7SPeter Brune }
2763baf369e7SPeter Brune 
2764d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx)
2765d71ae5a4SJacob Faibussowitsch {
27664c274da1SToby Isaac   Mat          cMat;
276779769bd5SJed Brown   Vec          cVec, cBias;
27684c274da1SToby Isaac   PetscSection section, cSec;
27694c274da1SToby Isaac   PetscInt     pStart, pEnd, p, dof;
27704c274da1SToby Isaac 
27714c274da1SToby Isaac   PetscFunctionBegin;
2772a4e35b19SJacob Faibussowitsch   (void)g;
2773a4e35b19SJacob Faibussowitsch   (void)ctx;
27744c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
27759566063dSJacob Faibussowitsch   PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias));
27764c274da1SToby Isaac   if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) {
27775db9a05bSToby Isaac     PetscInt nRows;
27785db9a05bSToby Isaac 
27799566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
27803ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
27819566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
27829566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
27839566063dSJacob Faibussowitsch     PetscCall(MatMult(cMat, l, cVec));
27849566063dSJacob Faibussowitsch     if (cBias) PetscCall(VecAXPY(cVec, 1., cBias));
27859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
27864c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
27879566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
27884c274da1SToby Isaac       if (dof) {
27894c274da1SToby Isaac         PetscScalar *vals;
27909566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(cVec, cSec, p, &vals));
27919566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES));
27924c274da1SToby Isaac       }
27934c274da1SToby Isaac     }
27949566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
27954c274da1SToby Isaac   }
27963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27974c274da1SToby Isaac }
27984c274da1SToby Isaac 
279947c6ae99SBarry Smith /*@
280001729b5cSPatrick Sanan   DMGlobalToLocal - update local vectors from global vector
280101729b5cSPatrick Sanan 
280220f4b53cSBarry Smith   Neighbor-wise Collective
280301729b5cSPatrick Sanan 
280401729b5cSPatrick Sanan   Input Parameters:
2805bb7acecfSBarry Smith + dm   - the `DM` object
280601729b5cSPatrick Sanan . g    - the global vector
2807bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
280801729b5cSPatrick Sanan - l    - the local vector
280901729b5cSPatrick Sanan 
281020f4b53cSBarry Smith   Level: beginner
281120f4b53cSBarry Smith 
281201729b5cSPatrick Sanan   Notes:
2813bb7acecfSBarry Smith   The communication involved in this update can be overlapped with computation by instead using
2814bb7acecfSBarry Smith   `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`.
2815bb7acecfSBarry Smith 
2816bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
281701729b5cSPatrick Sanan 
28181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`,
281960225df5SJacob Faibussowitsch           `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`,
2820bb7acecfSBarry Smith           `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()`
282101729b5cSPatrick Sanan @*/
2822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l)
2823d71ae5a4SJacob Faibussowitsch {
282401729b5cSPatrick Sanan   PetscFunctionBegin;
28259566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(dm, g, mode, l));
28269566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(dm, g, mode, l));
28273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
282801729b5cSPatrick Sanan }
282901729b5cSPatrick Sanan 
283001729b5cSPatrick Sanan /*@
283147c6ae99SBarry Smith   DMGlobalToLocalBegin - Begins updating local vectors from global vector
283247c6ae99SBarry Smith 
283320f4b53cSBarry Smith   Neighbor-wise Collective
283447c6ae99SBarry Smith 
283547c6ae99SBarry Smith   Input Parameters:
2836bb7acecfSBarry Smith + dm   - the `DM` object
283747c6ae99SBarry Smith . g    - the global vector
2838bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
283947c6ae99SBarry Smith - l    - the local vector
284047c6ae99SBarry Smith 
284101729b5cSPatrick Sanan   Level: intermediate
284247c6ae99SBarry Smith 
2843bb7acecfSBarry Smith   Notes:
2844bb7acecfSBarry Smith   The operation is completed with `DMGlobalToLocalEnd()`
2845bb7acecfSBarry Smith 
2846bb7acecfSBarry Smith   One can perform local computations between the `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()` to overlap communication and computation
2847bb7acecfSBarry Smith 
2848bb7acecfSBarry Smith   `DMGlobalToLocal()` is a short form of  `DMGlobalToLocalBegin()` and  `DMGlobalToLocalEnd()`
2849bb7acecfSBarry Smith 
2850bb7acecfSBarry Smith   `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process.
2851bb7acecfSBarry Smith 
285260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
285347c6ae99SBarry Smith @*/
2854d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
2855d71ae5a4SJacob Faibussowitsch {
28567128ae9fSMatthew G Knepley   PetscSF                 sf;
2857baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
285847c6ae99SBarry Smith 
285947c6ae99SBarry Smith   PetscFunctionBegin;
2860171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2861baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
28621baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx));
2863baf369e7SPeter Brune   }
28649566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
28657128ae9fSMatthew G Knepley   if (sf) {
2866ae5cfb4aSMatthew G. Knepley     const PetscScalar *gArray;
2867ae5cfb4aSMatthew G. Knepley     PetscScalar       *lArray;
2868d0295fc0SJunchao Zhang     PetscMemType       lmtype, gmtype;
28697128ae9fSMatthew G Knepley 
28707a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
28719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
28729566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
28739566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE));
28749566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
28759566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
28767128ae9fSMatthew G Knepley   } else {
2877fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
28787128ae9fSMatthew G Knepley   }
28793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
288047c6ae99SBarry Smith }
288147c6ae99SBarry Smith 
288247c6ae99SBarry Smith /*@
288347c6ae99SBarry Smith   DMGlobalToLocalEnd - Ends updating local vectors from global vector
288447c6ae99SBarry Smith 
288520f4b53cSBarry Smith   Neighbor-wise Collective
288647c6ae99SBarry Smith 
288747c6ae99SBarry Smith   Input Parameters:
2888bb7acecfSBarry Smith + dm   - the `DM` object
288947c6ae99SBarry Smith . g    - the global vector
2890bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
289147c6ae99SBarry Smith - l    - the local vector
289247c6ae99SBarry Smith 
289301729b5cSPatrick Sanan   Level: intermediate
289447c6ae99SBarry Smith 
2895bb7acecfSBarry Smith   Note:
2896bb7acecfSBarry Smith   See `DMGlobalToLocalBegin()` for details.
2897bb7acecfSBarry Smith 
289860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`
289947c6ae99SBarry Smith @*/
2900d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
2901d71ae5a4SJacob Faibussowitsch {
29027128ae9fSMatthew G Knepley   PetscSF                 sf;
2903ae5cfb4aSMatthew G. Knepley   const PetscScalar      *gArray;
2904ae5cfb4aSMatthew G. Knepley   PetscScalar            *lArray;
2905ca3d3a14SMatthew G. Knepley   PetscBool               transform;
2906baf369e7SPeter Brune   DMGlobalToLocalHookLink link;
2907d0295fc0SJunchao Zhang   PetscMemType            lmtype, gmtype;
290847c6ae99SBarry Smith 
290947c6ae99SBarry Smith   PetscFunctionBegin;
2910171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29119566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
29129566063dSJacob Faibussowitsch   PetscCall(DMHasBasisTransform(dm, &transform));
29137128ae9fSMatthew G Knepley   if (sf) {
29147a8be351SBarry Smith     PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode);
29157128ae9fSMatthew G Knepley 
29169566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype));
29179566063dSJacob Faibussowitsch     PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype));
29189566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE));
29199566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(l, &lArray));
29209566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayReadAndMemType(g, &gArray));
29219566063dSJacob Faibussowitsch     if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l));
29227128ae9fSMatthew G Knepley   } else {
2923fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
29247128ae9fSMatthew G Knepley   }
29259566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL));
2926baf369e7SPeter Brune   for (link = dm->gtolhook; link; link = link->next) {
29279566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
2928baf369e7SPeter Brune   }
29293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
293047c6ae99SBarry Smith }
293147c6ae99SBarry Smith 
2932d4d07f1eSToby Isaac /*@C
2933d4d07f1eSToby Isaac   DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called
2934d4d07f1eSToby Isaac 
293520f4b53cSBarry Smith   Logically Collective
2936d4d07f1eSToby Isaac 
29374165533cSJose E. Roman   Input Parameters:
2938bb7acecfSBarry Smith + dm        - the `DM`
2939bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()`
2940bb7acecfSBarry Smith . endhook   - function to run after `DMLocalToGlobalEnd()` has completed
294120f4b53cSBarry Smith - ctx       - [optional] user-defined context for provide data for the hooks (may be `NULL`)
2942d4d07f1eSToby Isaac 
294320f4b53cSBarry Smith   Calling sequence of `beginhook`:
2944a4e35b19SJacob Faibussowitsch + global - global `DM`
2945d4d07f1eSToby Isaac . l      - local vector
2946d4d07f1eSToby Isaac . mode   - mode
2947d4d07f1eSToby Isaac . g      - global vector
2948d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2949d4d07f1eSToby Isaac 
295020f4b53cSBarry Smith   Calling sequence of `endhook`:
2951bb7acecfSBarry Smith + global - global `DM`
2952d4d07f1eSToby Isaac . l      - local vector
2953d4d07f1eSToby Isaac . mode   - mode
2954d4d07f1eSToby Isaac . g      - global vector
2955d4d07f1eSToby Isaac - ctx    - optional user-defined function context
2956d4d07f1eSToby Isaac 
2957d4d07f1eSToby Isaac   Level: advanced
2958d4d07f1eSToby Isaac 
29591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
2960d4d07f1eSToby Isaac @*/
2961a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx)
2962d71ae5a4SJacob Faibussowitsch {
2963d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link, *p;
2964d4d07f1eSToby Isaac 
2965d4d07f1eSToby Isaac   PetscFunctionBegin;
2966d4d07f1eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
2967d4d07f1eSToby Isaac   for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */
29689566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
2969d4d07f1eSToby Isaac   link->beginhook = beginhook;
2970d4d07f1eSToby Isaac   link->endhook   = endhook;
2971d4d07f1eSToby Isaac   link->ctx       = ctx;
2972d4d07f1eSToby Isaac   link->next      = NULL;
2973d4d07f1eSToby Isaac   *p              = link;
29743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2975d4d07f1eSToby Isaac }
2976d4d07f1eSToby Isaac 
2977d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx)
2978d71ae5a4SJacob Faibussowitsch {
29794c274da1SToby Isaac   PetscFunctionBegin;
2980a4e35b19SJacob Faibussowitsch   (void)g;
2981a4e35b19SJacob Faibussowitsch   (void)ctx;
29824c274da1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
29832b6b7d09SToby Isaac   if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) {
29842b6b7d09SToby Isaac     Mat          cMat;
29852b6b7d09SToby Isaac     Vec          cVec;
29865db9a05bSToby Isaac     PetscInt     nRows;
29872b6b7d09SToby Isaac     PetscSection section, cSec;
29882b6b7d09SToby Isaac     PetscInt     pStart, pEnd, p, dof;
29892b6b7d09SToby Isaac 
29902b6b7d09SToby Isaac     PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL));
29912b6b7d09SToby Isaac     if (!cMat) PetscFunctionReturn(PETSC_SUCCESS);
29925db9a05bSToby Isaac 
29939566063dSJacob Faibussowitsch     PetscCall(MatGetSize(cMat, &nRows, NULL));
29943ba16761SJacob Faibussowitsch     if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS);
29959566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
29969566063dSJacob Faibussowitsch     PetscCall(MatCreateVecs(cMat, NULL, &cVec));
29979566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd));
29984c274da1SToby Isaac     for (p = pStart; p < pEnd; p++) {
29999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(cSec, p, &dof));
30004c274da1SToby Isaac       if (dof) {
30014c274da1SToby Isaac         PetscInt     d;
30024c274da1SToby Isaac         PetscScalar *vals;
30039566063dSJacob Faibussowitsch         PetscCall(VecGetValuesSection(l, section, p, &vals));
30049566063dSJacob Faibussowitsch         PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode));
30054c274da1SToby Isaac         /* for this to be the true transpose, we have to zero the values that
30064c274da1SToby Isaac          * we just extracted */
3007ad540459SPierre Jolivet         for (d = 0; d < dof; d++) vals[d] = 0.;
30084c274da1SToby Isaac       }
30094c274da1SToby Isaac     }
30109566063dSJacob Faibussowitsch     PetscCall(MatMultTransposeAdd(cMat, cVec, l, l));
30119566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&cVec));
30124c274da1SToby Isaac   }
30133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30144c274da1SToby Isaac }
301501729b5cSPatrick Sanan /*@
301601729b5cSPatrick Sanan   DMLocalToGlobal - updates global vectors from local vectors
301701729b5cSPatrick Sanan 
301820f4b53cSBarry Smith   Neighbor-wise Collective
301901729b5cSPatrick Sanan 
302001729b5cSPatrick Sanan   Input Parameters:
3021bb7acecfSBarry Smith + dm   - the `DM` object
302201729b5cSPatrick Sanan . l    - the local vector
3023bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
302401729b5cSPatrick Sanan - g    - the global vector
302501729b5cSPatrick Sanan 
302620f4b53cSBarry Smith   Level: beginner
302720f4b53cSBarry Smith 
302801729b5cSPatrick Sanan   Notes:
302901729b5cSPatrick Sanan   The communication involved in this update can be overlapped with computation by using
3030bb7acecfSBarry Smith   `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`.
303101729b5cSPatrick Sanan 
3032bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3033bb7acecfSBarry Smith 
3034bb7acecfSBarry Smith   `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one.
3035bb7acecfSBarry Smith 
3036bb7acecfSBarry Smith   Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process
303701729b5cSPatrick Sanan 
30381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()`
303901729b5cSPatrick Sanan @*/
3040d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g)
3041d71ae5a4SJacob Faibussowitsch {
304201729b5cSPatrick Sanan   PetscFunctionBegin;
30439566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, l, mode, g));
30449566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, l, mode, g));
30453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304601729b5cSPatrick Sanan }
30474c274da1SToby Isaac 
304847c6ae99SBarry Smith /*@
304901729b5cSPatrick Sanan   DMLocalToGlobalBegin - begins updating global vectors from local vectors
30509a42bb27SBarry Smith 
305120f4b53cSBarry Smith   Neighbor-wise Collective
30529a42bb27SBarry Smith 
30539a42bb27SBarry Smith   Input Parameters:
3054bb7acecfSBarry Smith + dm   - the `DM` object
3055f6813fd5SJed Brown . l    - the local vector
3056aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point.
30571eb28f2eSBarry Smith - g    - the global vector
30589a42bb27SBarry Smith 
305920f4b53cSBarry Smith   Level: intermediate
306020f4b53cSBarry Smith 
306195452b02SPatrick Sanan   Notes:
3062bb7acecfSBarry Smith   In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation.
3063bb7acecfSBarry Smith 
3064bb7acecfSBarry Smith   `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one.
3065bb7acecfSBarry Smith 
3066bb7acecfSBarry Smith   Use `DMLocalToGlobalEnd()` to complete the communication process.
3067bb7acecfSBarry Smith 
3068bb7acecfSBarry Smith   `DMLocalToGlobal()` is a short form of  `DMLocalToGlobalBegin()` and  `DMLocalToGlobalEnd()`
3069bb7acecfSBarry Smith 
3070bb7acecfSBarry Smith   `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process.
30719a42bb27SBarry Smith 
30721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`
30739a42bb27SBarry Smith @*/
3074d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g)
3075d71ae5a4SJacob Faibussowitsch {
30767128ae9fSMatthew G Knepley   PetscSF                 sf;
307784330215SMatthew G. Knepley   PetscSection            s, gs;
3078d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3079ca3d3a14SMatthew G. Knepley   Vec                     tmpl;
3080ae5cfb4aSMatthew G. Knepley   const PetscScalar      *lArray;
3081ae5cfb4aSMatthew G. Knepley   PetscScalar            *gArray;
3082fa88e482SJed Brown   PetscBool               isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE;
3083d0295fc0SJunchao Zhang   PetscMemType            lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST;
30849a42bb27SBarry Smith 
30859a42bb27SBarry Smith   PetscFunctionBegin;
3086171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
3087d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
30881baa6e33SBarry Smith     if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx));
3089d4d07f1eSToby Isaac   }
30909566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL));
30919566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
30929566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
30937128ae9fSMatthew G Knepley   switch (mode) {
30947128ae9fSMatthew G Knepley   case INSERT_VALUES:
30957128ae9fSMatthew G Knepley   case INSERT_ALL_VALUES:
3096d71ae5a4SJacob Faibussowitsch   case INSERT_BC_VALUES:
3097d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3098d71ae5a4SJacob Faibussowitsch     break;
30997128ae9fSMatthew G Knepley   case ADD_VALUES:
31007128ae9fSMatthew G Knepley   case ADD_ALL_VALUES:
3101d71ae5a4SJacob Faibussowitsch   case ADD_BC_VALUES:
3102d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3103d71ae5a4SJacob Faibussowitsch     break;
3104d71ae5a4SJacob Faibussowitsch   default:
3105d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
31067128ae9fSMatthew G Knepley   }
3107ca3d3a14SMatthew G. Knepley   if ((sf && !isInsert) || (s && isInsert)) {
31089566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3109ca3d3a14SMatthew G. Knepley     if (transform) {
31109566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
31119566063dSJacob Faibussowitsch       PetscCall(VecCopy(l, tmpl));
31129566063dSJacob Faibussowitsch       PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl));
31139566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3114fa88e482SJed Brown     } else if (isInsert) {
31159566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(l, &lArray));
3116fa88e482SJed Brown     } else {
31179566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype));
3118fa88e482SJed Brown       l_inplace = PETSC_TRUE;
3119ca3d3a14SMatthew G. Knepley     }
3120fa88e482SJed Brown     if (s && isInsert) {
31219566063dSJacob Faibussowitsch       PetscCall(VecGetArray(g, &gArray));
3122fa88e482SJed Brown     } else {
31239566063dSJacob Faibussowitsch       PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype));
3124fa88e482SJed Brown       g_inplace = PETSC_TRUE;
3125fa88e482SJed Brown     }
3126ca3d3a14SMatthew G. Knepley     if (sf && !isInsert) {
31279566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM));
312884330215SMatthew G. Knepley     } else if (s && isInsert) {
312984330215SMatthew G. Knepley       PetscInt gStart, pStart, pEnd, p;
313084330215SMatthew G. Knepley 
31319566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gs));
31329566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
31339566063dSJacob Faibussowitsch       PetscCall(VecGetOwnershipRange(g, &gStart, NULL));
313484330215SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
3135b3b16f48SMatthew G. Knepley         PetscInt dof, gdof, cdof, gcdof, off, goff, d, e;
313684330215SMatthew G. Knepley 
31379566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(s, p, &dof));
31389566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(gs, p, &gdof));
31399566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
31409566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof));
31419566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
31429566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gs, p, &goff));
3143b3b16f48SMatthew G. Knepley         /* Ignore off-process data and points with no global data */
314403442857SMatthew G. Knepley         if (!gdof || goff < 0) continue;
31457a8be351SBarry Smith         PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
3146b3b16f48SMatthew G. Knepley         /* If no constraints are enforced in the global vector */
3147b3b16f48SMatthew G. Knepley         if (!gcdof) {
314884330215SMatthew G. Knepley           for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d];
3149b3b16f48SMatthew G. Knepley           /* If constraints are enforced in the global vector */
3150b3b16f48SMatthew G. Knepley         } else if (cdof == gcdof) {
315184330215SMatthew G. Knepley           const PetscInt *cdofs;
315284330215SMatthew G. Knepley           PetscInt        cind = 0;
315384330215SMatthew G. Knepley 
31549566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs));
3155b3b16f48SMatthew G. Knepley           for (d = 0, e = 0; d < dof; ++d) {
31569371c9d4SSatish Balay             if ((cind < cdof) && (d == cdofs[cind])) {
31579371c9d4SSatish Balay               ++cind;
31589371c9d4SSatish Balay               continue;
31599371c9d4SSatish Balay             }
3160b3b16f48SMatthew G. Knepley             gArray[goff - gStart + e++] = lArray[off + d];
316184330215SMatthew G. Knepley           }
31627a8be351SBarry Smith         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof);
316384330215SMatthew G. Knepley       }
3164ca3d3a14SMatthew G. Knepley     }
3165fa88e482SJed Brown     if (g_inplace) {
31669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayAndMemType(g, &gArray));
3167fa88e482SJed Brown     } else {
31689566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(g, &gArray));
3169fa88e482SJed Brown     }
3170ca3d3a14SMatthew G. Knepley     if (transform) {
31719566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
31729566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3173fa88e482SJed Brown     } else if (l_inplace) {
31749566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3175ca3d3a14SMatthew G. Knepley     } else {
31769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(l, &lArray));
3177ca3d3a14SMatthew G. Knepley     }
31787128ae9fSMatthew G Knepley   } else {
3179fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
31807128ae9fSMatthew G Knepley   }
31813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31829a42bb27SBarry Smith }
31839a42bb27SBarry Smith 
31849a42bb27SBarry Smith /*@
31859a42bb27SBarry Smith   DMLocalToGlobalEnd - updates global vectors from local vectors
318647c6ae99SBarry Smith 
318720f4b53cSBarry Smith   Neighbor-wise Collective
318847c6ae99SBarry Smith 
318947c6ae99SBarry Smith   Input Parameters:
3190bb7acecfSBarry Smith + dm   - the `DM` object
3191f6813fd5SJed Brown . l    - the local vector
3192bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES`
3193f6813fd5SJed Brown - g    - the global vector
319447c6ae99SBarry Smith 
319501729b5cSPatrick Sanan   Level: intermediate
319647c6ae99SBarry Smith 
3197bb7acecfSBarry Smith   Note:
3198bb7acecfSBarry Smith   See `DMLocalToGlobalBegin()` for full details
3199bb7acecfSBarry Smith 
320060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`
320147c6ae99SBarry Smith @*/
3202d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g)
3203d71ae5a4SJacob Faibussowitsch {
32047128ae9fSMatthew G Knepley   PetscSF                 sf;
320584330215SMatthew G. Knepley   PetscSection            s;
3206d4d07f1eSToby Isaac   DMLocalToGlobalHookLink link;
3207ca3d3a14SMatthew G. Knepley   PetscBool               isInsert, transform;
320847c6ae99SBarry Smith 
320947c6ae99SBarry Smith   PetscFunctionBegin;
3210171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32119566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &sf));
32129566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
32137128ae9fSMatthew G Knepley   switch (mode) {
32147128ae9fSMatthew G Knepley   case INSERT_VALUES:
3215d71ae5a4SJacob Faibussowitsch   case INSERT_ALL_VALUES:
3216d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_TRUE;
3217d71ae5a4SJacob Faibussowitsch     break;
32187128ae9fSMatthew G Knepley   case ADD_VALUES:
3219d71ae5a4SJacob Faibussowitsch   case ADD_ALL_VALUES:
3220d71ae5a4SJacob Faibussowitsch     isInsert = PETSC_FALSE;
3221d71ae5a4SJacob Faibussowitsch     break;
3222d71ae5a4SJacob Faibussowitsch   default:
3223d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode);
32247128ae9fSMatthew G Knepley   }
322584330215SMatthew G. Knepley   if (sf && !isInsert) {
3226ae5cfb4aSMatthew G. Knepley     const PetscScalar *lArray;
3227ae5cfb4aSMatthew G. Knepley     PetscScalar       *gArray;
3228ca3d3a14SMatthew G. Knepley     Vec                tmpl;
322984330215SMatthew G. Knepley 
32309566063dSJacob Faibussowitsch     PetscCall(DMHasBasisTransform(dm, &transform));
3231ca3d3a14SMatthew G. Knepley     if (transform) {
32329566063dSJacob Faibussowitsch       PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
32339566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(tmpl, &lArray));
3234ca3d3a14SMatthew G. Knepley     } else {
32359566063dSJacob Faibussowitsch       PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL));
3236ca3d3a14SMatthew G. Knepley     }
32379566063dSJacob Faibussowitsch     PetscCall(VecGetArrayAndMemType(g, &gArray, NULL));
32389566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM));
3239ca3d3a14SMatthew G. Knepley     if (transform) {
32409566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(tmpl, &lArray));
32419566063dSJacob Faibussowitsch       PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl));
3242ca3d3a14SMatthew G. Knepley     } else {
32439566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayReadAndMemType(l, &lArray));
3244ca3d3a14SMatthew G. Knepley     }
32459566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayAndMemType(g, &gArray));
324684330215SMatthew G. Knepley   } else if (s && isInsert) {
32477128ae9fSMatthew G Knepley   } else {
3248fa1e479aSStefano Zampini     PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g);
32497128ae9fSMatthew G Knepley   }
3250d4d07f1eSToby Isaac   for (link = dm->ltoghook; link; link = link->next) {
32519566063dSJacob Faibussowitsch     if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx));
3252d4d07f1eSToby Isaac   }
32533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
325447c6ae99SBarry Smith }
325547c6ae99SBarry Smith 
3256f089877aSRichard Tran Mills /*@
3257a4e35b19SJacob Faibussowitsch   DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include
3258a4e35b19SJacob Faibussowitsch   ghost points that contain irrelevant values) to another local vector where the ghost points
3259a4e35b19SJacob Faibussowitsch   in the second are set correctly from values on other MPI ranks.
3260f089877aSRichard Tran Mills 
326120f4b53cSBarry Smith   Neighbor-wise Collective
3262f089877aSRichard Tran Mills 
3263f089877aSRichard Tran Mills   Input Parameters:
3264bb7acecfSBarry Smith + dm   - the `DM` object
3265bc0a1609SRichard Tran Mills . g    - the original local vector
3266bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3267f089877aSRichard Tran Mills 
3268bc0a1609SRichard Tran Mills   Output Parameter:
3269bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3270f089877aSRichard Tran Mills 
3271f089877aSRichard Tran Mills   Level: intermediate
3272f089877aSRichard Tran Mills 
327373ff1848SBarry Smith   Note:
3274a4e35b19SJacob Faibussowitsch   Must be followed by `DMLocalToLocalEnd()`.
3275a4e35b19SJacob Faibussowitsch 
327660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3277f089877aSRichard Tran Mills @*/
3278d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l)
3279d71ae5a4SJacob Faibussowitsch {
3280f089877aSRichard Tran Mills   PetscFunctionBegin;
3281f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
32829f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
32839f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
32849f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
32853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3286f089877aSRichard Tran Mills }
3287f089877aSRichard Tran Mills 
3288f089877aSRichard Tran Mills /*@
3289bb7acecfSBarry Smith   DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost
3290bb7acecfSBarry Smith   points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`.
3291f089877aSRichard Tran Mills 
329220f4b53cSBarry Smith   Neighbor-wise Collective
3293f089877aSRichard Tran Mills 
3294f089877aSRichard Tran Mills   Input Parameters:
329560225df5SJacob Faibussowitsch + dm   - the `DM` object
3296bc0a1609SRichard Tran Mills . g    - the original local vector
3297bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES`
3298f089877aSRichard Tran Mills 
3299bc0a1609SRichard Tran Mills   Output Parameter:
3300bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values
3301f089877aSRichard Tran Mills 
3302f089877aSRichard Tran Mills   Level: intermediate
3303f089877aSRichard Tran Mills 
330460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`
3305f089877aSRichard Tran Mills @*/
3306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l)
3307d71ae5a4SJacob Faibussowitsch {
3308f089877aSRichard Tran Mills   PetscFunctionBegin;
3309f089877aSRichard Tran Mills   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33109f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(g, VEC_CLASSID, 2);
33119f4ada15SMatthew G. Knepley   PetscValidHeaderSpecific(l, VEC_CLASSID, 4);
33129f4ada15SMatthew G. Knepley   PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l);
33133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3314f089877aSRichard Tran Mills }
3315f089877aSRichard Tran Mills 
331647c6ae99SBarry Smith /*@
3317bb7acecfSBarry Smith   DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh
331847c6ae99SBarry Smith 
331920f4b53cSBarry Smith   Collective
332047c6ae99SBarry Smith 
3321d8d19677SJose E. Roman   Input Parameters:
3322bb7acecfSBarry Smith + dm   - the `DM` object
332320f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`)
332447c6ae99SBarry Smith 
332547c6ae99SBarry Smith   Output Parameter:
3326bb7acecfSBarry Smith . dmc - the coarsened `DM`
332747c6ae99SBarry Smith 
332847c6ae99SBarry Smith   Level: developer
332947c6ae99SBarry Smith 
333073ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`,
333173ff1848SBarry Smith           `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()`
333247c6ae99SBarry Smith @*/
3333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc)
3334d71ae5a4SJacob Faibussowitsch {
3335b17ce1afSJed Brown   DMCoarsenHookLink link;
333647c6ae99SBarry Smith 
333747c6ae99SBarry Smith   PetscFunctionBegin;
3338171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
33399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0));
3340dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, coarsen, comm, dmc);
3341b9d85ea2SLisandro Dalcin   if (*dmc) {
3342a3574896SRichard Tran Mills     (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */
33439566063dSJacob Faibussowitsch     PetscCall(DMSetCoarseDM(dm, *dmc));
334443842a1eSJed Brown     (*dmc)->ops->creatematrix = dm->ops->creatematrix;
33459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc));
3346644e2e5bSBarry Smith     (*dmc)->ctx       = dm->ctx;
33470598a293SJed Brown     (*dmc)->levelup   = dm->levelup;
3348656b349aSBarry Smith     (*dmc)->leveldown = dm->leveldown + 1;
33499566063dSJacob Faibussowitsch     PetscCall(DMSetMatType(*dmc, dm->mattype));
3350b17ce1afSJed Brown     for (link = dm->coarsenhook; link; link = link->next) {
33519566063dSJacob Faibussowitsch       if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx));
3352b17ce1afSJed Brown     }
3353b9d85ea2SLisandro Dalcin   }
33549566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0));
33557a8be351SBarry Smith   PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced");
33563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3357b17ce1afSJed Brown }
3358b17ce1afSJed Brown 
3359bb9467b5SJed Brown /*@C
3360b17ce1afSJed Brown   DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid
3361b17ce1afSJed Brown 
336220f4b53cSBarry Smith   Logically Collective; No Fortran Support
3363b17ce1afSJed Brown 
33644165533cSJose E. Roman   Input Parameters:
3365bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3366b17ce1afSJed Brown . coarsenhook  - function to run when setting up a coarser level
3367bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`)
336820f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3369b17ce1afSJed Brown 
337020f4b53cSBarry Smith   Calling sequence of `coarsenhook`:
3371bb7acecfSBarry Smith + fine   - fine level `DM`
3372bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to
3373b17ce1afSJed Brown - ctx    - optional user-defined function context
3374b17ce1afSJed Brown 
337520f4b53cSBarry Smith   Calling sequence of `restricthook`:
3376bb7acecfSBarry Smith + fine      - fine level `DM`
3377bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation
3378c833c3b5SJed Brown . rscale    - scaling vector for restriction
3379c833c3b5SJed Brown . inject    - matrix restricting by injection
3380b17ce1afSJed Brown . coarse    - coarse level DM to update
3381b17ce1afSJed Brown - ctx       - optional user-defined function context
3382b17ce1afSJed Brown 
3383b17ce1afSJed Brown   Level: advanced
3384b17ce1afSJed Brown 
3385b17ce1afSJed Brown   Notes:
3386bb7acecfSBarry Smith   This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`.
3387b17ce1afSJed Brown 
3388b17ce1afSJed Brown   If this function is called multiple times, the hooks will be run in the order they are added.
3389b17ce1afSJed Brown 
3390b17ce1afSJed Brown   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3391bb7acecfSBarry Smith   extract the finest level information from its context (instead of from the `SNES`).
3392b17ce1afSJed Brown 
3393bb7acecfSBarry Smith   The hooks are automatically called by `DMRestrict()`
3394bb7acecfSBarry Smith 
33951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3396b17ce1afSJed Brown @*/
3397a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx)
3398d71ae5a4SJacob Faibussowitsch {
3399b17ce1afSJed Brown   DMCoarsenHookLink link, *p;
3400b17ce1afSJed Brown 
3401b17ce1afSJed Brown   PetscFunctionBegin;
3402b17ce1afSJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
34031e3d8eccSJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
34043ba16761SJacob Faibussowitsch     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
34051e3d8eccSJed Brown   }
34069566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
3407b17ce1afSJed Brown   link->coarsenhook  = coarsenhook;
3408b17ce1afSJed Brown   link->restricthook = restricthook;
3409b17ce1afSJed Brown   link->ctx          = ctx;
34100298fd71SBarry Smith   link->next         = NULL;
3411b17ce1afSJed Brown   *p                 = link;
34123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3413b17ce1afSJed Brown }
3414b17ce1afSJed Brown 
3415dc822a44SJed Brown /*@C
3416bb7acecfSBarry Smith   DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()`
3417dc822a44SJed Brown 
341820f4b53cSBarry Smith   Logically Collective; No Fortran Support
3419dc822a44SJed Brown 
34204165533cSJose E. Roman   Input Parameters:
3421bb7acecfSBarry Smith + fine         - `DM` on which to run a hook when restricting to a coarser level
3422dc822a44SJed Brown . coarsenhook  - function to run when setting up a coarser level
3423bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels
342420f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3425dc822a44SJed Brown 
3426dc822a44SJed Brown   Level: advanced
3427dc822a44SJed Brown 
342873ff1848SBarry Smith   Notes:
342973ff1848SBarry Smith   This function does nothing if the `coarsenhook` is not in the list.
343073ff1848SBarry Smith 
343173ff1848SBarry Smith   See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook`
3432dc822a44SJed Brown 
34331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`
3434dc822a44SJed Brown @*/
3435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx)
3436d71ae5a4SJacob Faibussowitsch {
3437dc822a44SJed Brown   DMCoarsenHookLink link, *p;
3438dc822a44SJed Brown 
3439dc822a44SJed Brown   PetscFunctionBegin;
3440dc822a44SJed Brown   PetscValidHeaderSpecific(fine, DM_CLASSID, 1);
3441dc822a44SJed Brown   for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3442dc822a44SJed Brown     if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3443dc822a44SJed Brown       link = *p;
3444dc822a44SJed Brown       *p   = link->next;
34459566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3446dc822a44SJed Brown       break;
3447dc822a44SJed Brown     }
3448dc822a44SJed Brown   }
34493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450dc822a44SJed Brown }
3451dc822a44SJed Brown 
3452b17ce1afSJed Brown /*@
3453bb7acecfSBarry Smith   DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()`
3454b17ce1afSJed Brown 
3455b17ce1afSJed Brown   Collective if any hooks are
3456b17ce1afSJed Brown 
34574165533cSJose E. Roman   Input Parameters:
3458bb7acecfSBarry Smith + fine    - finer `DM` from which the data is obtained
3459bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation
3460e91eccc2SStefano Zampini . rscale  - scaling vector for restriction
3461bb7acecfSBarry Smith . inject  - injection matrix, also use `MatRestrict()`
346220f4b53cSBarry Smith - coarse  - coarser `DM` to update
3463b17ce1afSJed Brown 
3464b17ce1afSJed Brown   Level: developer
3465b17ce1afSJed Brown 
346673ff1848SBarry Smith   Developer Note:
3467bb7acecfSBarry Smith   Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better
3468bb7acecfSBarry Smith 
34691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()`
3470b17ce1afSJed Brown @*/
3471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse)
3472d71ae5a4SJacob Faibussowitsch {
3473b17ce1afSJed Brown   DMCoarsenHookLink link;
3474b17ce1afSJed Brown 
3475b17ce1afSJed Brown   PetscFunctionBegin;
3476b17ce1afSJed Brown   for (link = fine->coarsenhook; link; link = link->next) {
34771baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx));
3478b17ce1afSJed Brown   }
34793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
348047c6ae99SBarry Smith }
348147c6ae99SBarry Smith 
3482bb9467b5SJed Brown /*@C
348373ff1848SBarry Smith   DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
34845dbd56e3SPeter Brune 
348520f4b53cSBarry Smith   Logically Collective; No Fortran Support
34865dbd56e3SPeter Brune 
34874165533cSJose E. Roman   Input Parameters:
3488bb7acecfSBarry Smith + global       - global `DM`
3489bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
34905dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve)
349120f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
34925dbd56e3SPeter Brune 
349320f4b53cSBarry Smith   Calling sequence of `ddhook`:
3494bb7acecfSBarry Smith + global - global `DM`
349573ff1848SBarry Smith . block  - subdomain `DM`
3496ec4806b8SPeter Brune - ctx    - optional user-defined function context
3497ec4806b8SPeter Brune 
349820f4b53cSBarry Smith   Calling sequence of `restricthook`:
3499bb7acecfSBarry Smith + global - global `DM`
350073ff1848SBarry Smith . out    - scatter to the outer (with ghost and overlap points) sub vector
350173ff1848SBarry Smith . in     - scatter to sub vector values only owned locally
350273ff1848SBarry Smith . block  - subdomain `DM`
35035dbd56e3SPeter Brune - ctx    - optional user-defined function context
35045dbd56e3SPeter Brune 
35055dbd56e3SPeter Brune   Level: advanced
35065dbd56e3SPeter Brune 
35075dbd56e3SPeter Brune   Notes:
350873ff1848SBarry Smith   This function can be used if auxiliary data needs to be set up on subdomain `DM`s.
35095dbd56e3SPeter Brune 
35105dbd56e3SPeter Brune   If this function is called multiple times, the hooks will be run in the order they are added.
35115dbd56e3SPeter Brune 
35125dbd56e3SPeter Brune   In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to
3513bb7acecfSBarry Smith   extract the global information from its context (instead of from the `SNES`).
35145dbd56e3SPeter Brune 
351573ff1848SBarry Smith   Developer Note:
351673ff1848SBarry Smith   It is unclear what "block solve" means within the definition of `restricthook`
351773ff1848SBarry Smith 
351873ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()`
35195dbd56e3SPeter Brune @*/
3520a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx)
3521d71ae5a4SJacob Faibussowitsch {
3522be081cd6SPeter Brune   DMSubDomainHookLink link, *p;
35235dbd56e3SPeter Brune 
35245dbd56e3SPeter Brune   PetscFunctionBegin;
35255dbd56e3SPeter Brune   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3526b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */
35273ba16761SJacob Faibussowitsch     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS);
3528b3a6b972SJed Brown   }
35299566063dSJacob Faibussowitsch   PetscCall(PetscNew(&link));
35305dbd56e3SPeter Brune   link->restricthook = restricthook;
3531be081cd6SPeter Brune   link->ddhook       = ddhook;
35325dbd56e3SPeter Brune   link->ctx          = ctx;
35330298fd71SBarry Smith   link->next         = NULL;
35345dbd56e3SPeter Brune   *p                 = link;
35353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35365dbd56e3SPeter Brune }
35375dbd56e3SPeter Brune 
3538b3a6b972SJed Brown /*@C
353973ff1848SBarry Smith   DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()`
3540b3a6b972SJed Brown 
354120f4b53cSBarry Smith   Logically Collective; No Fortran Support
3542b3a6b972SJed Brown 
35434165533cSJose E. Roman   Input Parameters:
3544bb7acecfSBarry Smith + global       - global `DM`
3545bb7acecfSBarry Smith . ddhook       - function to run to pass data to the decomposition `DM` upon its creation
3546b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve)
354720f4b53cSBarry Smith - ctx          - [optional] user-defined context for provide data for the hooks (may be `NULL`)
3548b3a6b972SJed Brown 
3549b3a6b972SJed Brown   Level: advanced
3550b3a6b972SJed Brown 
355173ff1848SBarry Smith   Note:
355273ff1848SBarry Smith   See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook`
355373ff1848SBarry Smith 
355473ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`,
355573ff1848SBarry Smith           `DMCreateDomainDecomposition()`
3556b3a6b972SJed Brown @*/
3557d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx)
3558d71ae5a4SJacob Faibussowitsch {
3559b3a6b972SJed Brown   DMSubDomainHookLink link, *p;
3560b3a6b972SJed Brown 
3561b3a6b972SJed Brown   PetscFunctionBegin;
3562b3a6b972SJed Brown   PetscValidHeaderSpecific(global, DM_CLASSID, 1);
3563b3a6b972SJed Brown   for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */
3564b3a6b972SJed Brown     if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) {
3565b3a6b972SJed Brown       link = *p;
3566b3a6b972SJed Brown       *p   = link->next;
35679566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
3568b3a6b972SJed Brown       break;
3569b3a6b972SJed Brown     }
3570b3a6b972SJed Brown   }
35713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3572b3a6b972SJed Brown }
3573b3a6b972SJed Brown 
35745dbd56e3SPeter Brune /*@
357573ff1848SBarry Smith   DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()`
35765dbd56e3SPeter Brune 
35775dbd56e3SPeter Brune   Collective if any hooks are
35785dbd56e3SPeter Brune 
35794165533cSJose E. Roman   Input Parameters:
3580a4e35b19SJacob Faibussowitsch + global   - The global `DM` to use as a base
3581a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap
3582a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts
3583a4e35b19SJacob Faibussowitsch - subdm    - The subdomain `DM` to update
35845dbd56e3SPeter Brune 
35855dbd56e3SPeter Brune   Level: developer
35865dbd56e3SPeter Brune 
358773ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()`
35885dbd56e3SPeter Brune @*/
3589d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm)
3590d71ae5a4SJacob Faibussowitsch {
3591be081cd6SPeter Brune   DMSubDomainHookLink link;
35925dbd56e3SPeter Brune 
35935dbd56e3SPeter Brune   PetscFunctionBegin;
3594be081cd6SPeter Brune   for (link = global->subdomainhook; link; link = link->next) {
35951baa6e33SBarry Smith     if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx));
35965dbd56e3SPeter Brune   }
35973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
35985dbd56e3SPeter Brune }
35995dbd56e3SPeter Brune 
36005fe1f584SPeter Brune /*@
3601bb7acecfSBarry Smith   DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`.
36025fe1f584SPeter Brune 
36035fe1f584SPeter Brune   Not Collective
36045fe1f584SPeter Brune 
36055fe1f584SPeter Brune   Input Parameter:
3606bb7acecfSBarry Smith . dm - the `DM` object
36075fe1f584SPeter Brune 
36085fe1f584SPeter Brune   Output Parameter:
36096a7d9d85SPeter Brune . level - number of coarsenings
36105fe1f584SPeter Brune 
36115fe1f584SPeter Brune   Level: developer
36125fe1f584SPeter Brune 
36131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36145fe1f584SPeter Brune @*/
3615d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level)
3616d71ae5a4SJacob Faibussowitsch {
36175fe1f584SPeter Brune   PetscFunctionBegin;
36185fe1f584SPeter Brune   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36194f572ea9SToby Isaac   PetscAssertPointer(level, 2);
36205fe1f584SPeter Brune   *level = dm->leveldown;
36213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36225fe1f584SPeter Brune }
36235fe1f584SPeter Brune 
36249a64c4a8SMatthew G. Knepley /*@
3625bb7acecfSBarry Smith   DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`.
36269a64c4a8SMatthew G. Knepley 
362720f4b53cSBarry Smith   Collective
36289a64c4a8SMatthew G. Knepley 
36299a64c4a8SMatthew G. Knepley   Input Parameters:
3630bb7acecfSBarry Smith + dm    - the `DM` object
36319a64c4a8SMatthew G. Knepley - level - number of coarsenings
36329a64c4a8SMatthew G. Knepley 
36339a64c4a8SMatthew G. Knepley   Level: developer
36349a64c4a8SMatthew G. Knepley 
3635bb7acecfSBarry Smith   Note:
3636bb7acecfSBarry Smith   This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()`
3637bb7acecfSBarry Smith 
363842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
36399a64c4a8SMatthew G. Knepley @*/
3640d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level)
3641d71ae5a4SJacob Faibussowitsch {
36429a64c4a8SMatthew G. Knepley   PetscFunctionBegin;
36439a64c4a8SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36449a64c4a8SMatthew G. Knepley   dm->leveldown = level;
36453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
36469a64c4a8SMatthew G. Knepley }
36479a64c4a8SMatthew G. Knepley 
3648cc4c1da9SBarry Smith /*@
3649bb7acecfSBarry Smith   DMRefineHierarchy - Refines a `DM` object, all levels at once
365047c6ae99SBarry Smith 
365120f4b53cSBarry Smith   Collective
365247c6ae99SBarry Smith 
3653d8d19677SJose E. Roman   Input Parameters:
3654bb7acecfSBarry Smith + dm      - the `DM` object
365547c6ae99SBarry Smith - nlevels - the number of levels of refinement
365647c6ae99SBarry Smith 
365747c6ae99SBarry Smith   Output Parameter:
3658bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy
365947c6ae99SBarry Smith 
366047c6ae99SBarry Smith   Level: developer
366147c6ae99SBarry Smith 
36621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
366347c6ae99SBarry Smith @*/
3664d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[])
3665d71ae5a4SJacob Faibussowitsch {
366647c6ae99SBarry Smith   PetscFunctionBegin;
3667171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
36687a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
36693ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
36704f572ea9SToby Isaac   PetscAssertPointer(dmf, 3);
3671213acdd3SPierre Jolivet   if (dm->ops->refine && !dm->ops->refinehierarchy) {
367247c6ae99SBarry Smith     PetscInt i;
367347c6ae99SBarry Smith 
36749566063dSJacob Faibussowitsch     PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0]));
367548a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i]));
3676213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf);
36773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
367847c6ae99SBarry Smith }
367947c6ae99SBarry Smith 
3680cc4c1da9SBarry Smith /*@
3681bb7acecfSBarry Smith   DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once
368247c6ae99SBarry Smith 
368320f4b53cSBarry Smith   Collective
368447c6ae99SBarry Smith 
3685d8d19677SJose E. Roman   Input Parameters:
3686bb7acecfSBarry Smith + dm      - the `DM` object
368747c6ae99SBarry Smith - nlevels - the number of levels of coarsening
368847c6ae99SBarry Smith 
368947c6ae99SBarry Smith   Output Parameter:
3690bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy
369147c6ae99SBarry Smith 
369247c6ae99SBarry Smith   Level: developer
369347c6ae99SBarry Smith 
36941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`
369547c6ae99SBarry Smith @*/
3696d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[])
3697d71ae5a4SJacob Faibussowitsch {
369847c6ae99SBarry Smith   PetscFunctionBegin;
3699171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37007a8be351SBarry Smith   PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative");
37013ba16761SJacob Faibussowitsch   if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS);
37024f572ea9SToby Isaac   PetscAssertPointer(dmc, 3);
3703213acdd3SPierre Jolivet   if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) {
370447c6ae99SBarry Smith     PetscInt i;
370547c6ae99SBarry Smith 
37069566063dSJacob Faibussowitsch     PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0]));
370748a46eb9SPierre Jolivet     for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i]));
3708213acdd3SPierre Jolivet   } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc);
37093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
371047c6ae99SBarry Smith }
371147c6ae99SBarry Smith 
37121a266240SBarry Smith /*@C
3713bb7acecfSBarry Smith   DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed
37141a266240SBarry Smith 
3715bb7acecfSBarry Smith   Logically Collective if the function is collective
37161a266240SBarry Smith 
37171a266240SBarry Smith   Input Parameters:
3718bb7acecfSBarry Smith + dm      - the `DM` object
371949abdd8aSBarry Smith - destroy - the destroy function, see `PetscCtxDestroyFn` for the calling sequence
37201a266240SBarry Smith 
37211a266240SBarry Smith   Level: intermediate
37221a266240SBarry Smith 
372349abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`,
372449abdd8aSBarry Smith           `DMGetApplicationContext()`, `PetscCtxDestroyFn`
3725f07f9ceaSJed Brown @*/
372649abdd8aSBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscCtxDestroyFn *destroy)
3727d71ae5a4SJacob Faibussowitsch {
37281a266240SBarry Smith   PetscFunctionBegin;
3729171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
37301a266240SBarry Smith   dm->ctxdestroy = destroy;
37313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37321a266240SBarry Smith }
37331a266240SBarry Smith 
3734b07ff414SBarry Smith /*@
3735bb7acecfSBarry Smith   DMSetApplicationContext - Set a user context into a `DM` object
373647c6ae99SBarry Smith 
373747c6ae99SBarry Smith   Not Collective
373847c6ae99SBarry Smith 
373947c6ae99SBarry Smith   Input Parameters:
3740bb7acecfSBarry Smith + dm  - the `DM` object
374147c6ae99SBarry Smith - ctx - the user context
374247c6ae99SBarry Smith 
374347c6ae99SBarry Smith   Level: intermediate
374447c6ae99SBarry Smith 
3745ce78bad3SBarry Smith   Note:
374635cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3747e33b3f0fSStefano Zampini   In a multilevel solver, the user context is shared by all the `DM` in the hierarchy; it is thus not advisable
3748e33b3f0fSStefano Zampini   to store objects that represent discretized quantities inside the context.
3749bb7acecfSBarry Smith 
3750ce78bad3SBarry Smith   Fortran Note:
3751ce78bad3SBarry Smith   This only works when `ctx` is a Fortran derived type (it cannot be a `PetscObject`), we recommend writing a Fortran interface definition for this
3752ce78bad3SBarry Smith   function that tells the Fortran compiler the derived data type that is passed in as the `ctx` argument. See `DMGetApplicationContext()` for
3753ce78bad3SBarry Smith   an example.
3754ce78bad3SBarry Smith 
375560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
375647c6ae99SBarry Smith @*/
3757d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx)
3758d71ae5a4SJacob Faibussowitsch {
375947c6ae99SBarry Smith   PetscFunctionBegin;
3760171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
376147c6ae99SBarry Smith   dm->ctx = ctx;
37623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376347c6ae99SBarry Smith }
376447c6ae99SBarry Smith 
376547c6ae99SBarry Smith /*@
3766ce78bad3SBarry Smith   DMGetApplicationContext - Gets a user context from a `DM` object provided with `DMSetApplicationContext()`
376747c6ae99SBarry Smith 
376847c6ae99SBarry Smith   Not Collective
376947c6ae99SBarry Smith 
377047c6ae99SBarry Smith   Input Parameter:
3771bb7acecfSBarry Smith . dm - the `DM` object
377247c6ae99SBarry Smith 
377347c6ae99SBarry Smith   Output Parameter:
3774ce78bad3SBarry Smith . ctx - a pointer to the user context
377547c6ae99SBarry Smith 
377647c6ae99SBarry Smith   Level: intermediate
377747c6ae99SBarry Smith 
3778bb7acecfSBarry Smith   Note:
377935cb6cd3SPierre Jolivet   A user context is a way to pass problem specific information that is accessible whenever the `DM` is available
3780bb7acecfSBarry Smith 
3781ce78bad3SBarry Smith   Fortran Notes:
3782ce78bad3SBarry Smith   This only works when the context is a Fortran derived type (it cannot be a `PetscObject`) and you **must** write a Fortran interface definition for this
3783ce78bad3SBarry Smith   function that tells the Fortran compiler the derived data type that is returned as the `ctx` argument. For example,
3784ce78bad3SBarry Smith .vb
3785ce78bad3SBarry Smith   Interface DMGetApplicationContext
3786ce78bad3SBarry Smith     Subroutine DMGetApplicationContext(dm,ctx,ierr)
3787ce78bad3SBarry Smith   #include <petsc/finclude/petscdm.h>
3788ce78bad3SBarry Smith       use petscdm
3789ce78bad3SBarry Smith       DM dm
3790ce78bad3SBarry Smith       type(tUsertype), pointer :: ctx
3791ce78bad3SBarry Smith       PetscErrorCode ierr
3792ce78bad3SBarry Smith     End Subroutine
3793ce78bad3SBarry Smith   End Interface DMGetApplicationContext
3794ce78bad3SBarry Smith .ve
3795ce78bad3SBarry Smith 
3796bfe80ac4SPierre Jolivet   The prototype for `ctx` must be
3797ce78bad3SBarry Smith .vb
3798ce78bad3SBarry Smith   type(tUsertype), pointer :: ctx
3799ce78bad3SBarry Smith .ve
3800ce78bad3SBarry Smith 
380142747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`
380247c6ae99SBarry Smith @*/
3803ce78bad3SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm, PeCtx ctx)
3804d71ae5a4SJacob Faibussowitsch {
380547c6ae99SBarry Smith   PetscFunctionBegin;
3806171400e9SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38071b2093e4SBarry Smith   *(void **)ctx = dm->ctx;
38083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
380947c6ae99SBarry Smith }
381047c6ae99SBarry Smith 
381108da532bSDmitry Karpeev /*@C
3812bb7acecfSBarry Smith   DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`.
381308da532bSDmitry Karpeev 
381420f4b53cSBarry Smith   Logically Collective
381508da532bSDmitry Karpeev 
3816d8d19677SJose E. Roman   Input Parameters:
381708da532bSDmitry Karpeev + dm - the DM object
3818ce78bad3SBarry Smith - f  - the function that computes variable bounds used by `SNESVI` (use `NULL` to cancel a previous function that was set)
381908da532bSDmitry Karpeev 
382008da532bSDmitry Karpeev   Level: intermediate
382108da532bSDmitry Karpeev 
3822ce78bad3SBarry Smith   Developer Note:
3823ce78bad3SBarry Smith   Should be called `DMSetComputeVIBounds()` or something similar
3824ce78bad3SBarry Smith 
38251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`,
3826db781477SPatrick Sanan          `DMSetJacobian()`
382708da532bSDmitry Karpeev @*/
3828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec))
3829d71ae5a4SJacob Faibussowitsch {
383008da532bSDmitry Karpeev   PetscFunctionBegin;
38315a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
383208da532bSDmitry Karpeev   dm->ops->computevariablebounds = f;
38333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
383408da532bSDmitry Karpeev }
383508da532bSDmitry Karpeev 
383608da532bSDmitry Karpeev /*@
3837bb7acecfSBarry Smith   DMHasVariableBounds - does the `DM` object have a variable bounds function?
383808da532bSDmitry Karpeev 
383908da532bSDmitry Karpeev   Not Collective
384008da532bSDmitry Karpeev 
384108da532bSDmitry Karpeev   Input Parameter:
3842bb7acecfSBarry Smith . dm - the `DM` object to destroy
384308da532bSDmitry Karpeev 
384408da532bSDmitry Karpeev   Output Parameter:
3845bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists
384608da532bSDmitry Karpeev 
384708da532bSDmitry Karpeev   Level: developer
384808da532bSDmitry Karpeev 
38491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
385008da532bSDmitry Karpeev @*/
3851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg)
3852d71ae5a4SJacob Faibussowitsch {
385308da532bSDmitry Karpeev   PetscFunctionBegin;
38545a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
38554f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
385608da532bSDmitry Karpeev   *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE;
38573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
385808da532bSDmitry Karpeev }
385908da532bSDmitry Karpeev 
3860cc4c1da9SBarry Smith /*@
3861bb7acecfSBarry Smith   DMComputeVariableBounds - compute variable bounds used by `SNESVI`.
386208da532bSDmitry Karpeev 
386320f4b53cSBarry Smith   Logically Collective
386408da532bSDmitry Karpeev 
3865f899ff85SJose E. Roman   Input Parameter:
3866bb7acecfSBarry Smith . dm - the `DM` object
386708da532bSDmitry Karpeev 
386860225df5SJacob Faibussowitsch   Output Parameters:
386908da532bSDmitry Karpeev + xl - lower bound
387008da532bSDmitry Karpeev - xu - upper bound
387108da532bSDmitry Karpeev 
3872907376e6SBarry Smith   Level: advanced
3873907376e6SBarry Smith 
387420f4b53cSBarry Smith   Note:
387595452b02SPatrick Sanan   This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds()
387608da532bSDmitry Karpeev 
38771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`
387808da532bSDmitry Karpeev @*/
3879d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu)
3880d71ae5a4SJacob Faibussowitsch {
388108da532bSDmitry Karpeev   PetscFunctionBegin;
38825a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
388308da532bSDmitry Karpeev   PetscValidHeaderSpecific(xl, VEC_CLASSID, 2);
38845a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(xu, VEC_CLASSID, 3);
3885dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, computevariablebounds, xl, xu);
38863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
388708da532bSDmitry Karpeev }
388808da532bSDmitry Karpeev 
3889b0ae01b7SPeter Brune /*@
3890bb7acecfSBarry Smith   DMHasColoring - does the `DM` object have a method of providing a coloring?
3891b0ae01b7SPeter Brune 
3892b0ae01b7SPeter Brune   Not Collective
3893b0ae01b7SPeter Brune 
3894b0ae01b7SPeter Brune   Input Parameter:
3895b0ae01b7SPeter Brune . dm - the DM object
3896b0ae01b7SPeter Brune 
3897b0ae01b7SPeter Brune   Output Parameter:
3898bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`.
3899b0ae01b7SPeter Brune 
3900b0ae01b7SPeter Brune   Level: developer
3901b0ae01b7SPeter Brune 
39021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()`
3903b0ae01b7SPeter Brune @*/
3904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg)
3905d71ae5a4SJacob Faibussowitsch {
3906b0ae01b7SPeter Brune   PetscFunctionBegin;
39075a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39084f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3909b0ae01b7SPeter Brune   *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE;
39103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3911b0ae01b7SPeter Brune }
3912b0ae01b7SPeter Brune 
39133ad4599aSBarry Smith /*@
3914bb7acecfSBarry Smith   DMHasCreateRestriction - does the `DM` object have a method of providing a restriction?
39153ad4599aSBarry Smith 
39163ad4599aSBarry Smith   Not Collective
39173ad4599aSBarry Smith 
39183ad4599aSBarry Smith   Input Parameter:
3919bb7acecfSBarry Smith . dm - the `DM` object
39203ad4599aSBarry Smith 
39213ad4599aSBarry Smith   Output Parameter:
3922bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`.
39233ad4599aSBarry Smith 
39243ad4599aSBarry Smith   Level: developer
39253ad4599aSBarry Smith 
39261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()`
39273ad4599aSBarry Smith @*/
3928d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg)
3929d71ae5a4SJacob Faibussowitsch {
39303ad4599aSBarry Smith   PetscFunctionBegin;
39315a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39324f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
39333ad4599aSBarry Smith   *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE;
39343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39353ad4599aSBarry Smith }
39363ad4599aSBarry Smith 
3937a7058e45SLawrence Mitchell /*@
3938bb7acecfSBarry Smith   DMHasCreateInjection - does the `DM` object have a method of providing an injection?
3939a7058e45SLawrence Mitchell 
3940a7058e45SLawrence Mitchell   Not Collective
3941a7058e45SLawrence Mitchell 
3942a7058e45SLawrence Mitchell   Input Parameter:
3943bb7acecfSBarry Smith . dm - the `DM` object
3944a7058e45SLawrence Mitchell 
3945a7058e45SLawrence Mitchell   Output Parameter:
3946bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`.
3947a7058e45SLawrence Mitchell 
3948a7058e45SLawrence Mitchell   Level: developer
3949a7058e45SLawrence Mitchell 
39501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()`
3951a7058e45SLawrence Mitchell @*/
3952d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg)
3953d71ae5a4SJacob Faibussowitsch {
3954a7058e45SLawrence Mitchell   PetscFunctionBegin;
39555a84ad33SLisandro Dalcin   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39564f572ea9SToby Isaac   PetscAssertPointer(flg, 2);
3957dbbe0bcdSBarry Smith   if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg);
3958ad540459SPierre Jolivet   else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE;
39593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3960a7058e45SLawrence Mitchell }
3961a7058e45SLawrence Mitchell 
39620298fd71SBarry Smith PetscFunctionList DMList              = NULL;
3963264ace61SBarry Smith PetscBool         DMRegisterAllCalled = PETSC_FALSE;
3964264ace61SBarry Smith 
3965cc4c1da9SBarry Smith /*@
3966bb7acecfSBarry Smith   DMSetType - Builds a `DM`, for a particular `DM` implementation.
3967264ace61SBarry Smith 
396820f4b53cSBarry Smith   Collective
3969264ace61SBarry Smith 
3970264ace61SBarry Smith   Input Parameters:
3971bb7acecfSBarry Smith + dm     - The `DM` object
3972bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX`
3973264ace61SBarry Smith 
3974264ace61SBarry Smith   Options Database Key:
3975bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types
3976264ace61SBarry Smith 
3977264ace61SBarry Smith   Level: intermediate
3978264ace61SBarry Smith 
3979bb7acecfSBarry Smith   Note:
39800462cc06SPierre Jolivet   Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()`
3981bb7acecfSBarry Smith 
39821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()`
3983264ace61SBarry Smith @*/
3984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method)
3985d71ae5a4SJacob Faibussowitsch {
3986264ace61SBarry Smith   PetscErrorCode (*r)(DM);
3987264ace61SBarry Smith   PetscBool match;
3988264ace61SBarry Smith 
3989264ace61SBarry Smith   PetscFunctionBegin;
3990264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
39919566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match));
39923ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
3993264ace61SBarry Smith 
39949566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
39959566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(DMList, method, &r));
39967a8be351SBarry Smith   PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method);
3997264ace61SBarry Smith 
3998dbbe0bcdSBarry Smith   PetscTryTypeMethod(dm, destroy);
39999566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops)));
40009566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method));
40019566063dSJacob Faibussowitsch   PetscCall((*r)(dm));
40023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4003264ace61SBarry Smith }
4004264ace61SBarry Smith 
4005cc4c1da9SBarry Smith /*@
4006bb7acecfSBarry Smith   DMGetType - Gets the `DM` type name (as a string) from the `DM`.
4007264ace61SBarry Smith 
4008264ace61SBarry Smith   Not Collective
4009264ace61SBarry Smith 
4010264ace61SBarry Smith   Input Parameter:
4011bb7acecfSBarry Smith . dm - The `DM`
4012264ace61SBarry Smith 
4013264ace61SBarry Smith   Output Parameter:
4014bb7acecfSBarry Smith . type - The `DMType` name
4015264ace61SBarry Smith 
4016264ace61SBarry Smith   Level: intermediate
4017264ace61SBarry Smith 
40181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()`
4019264ace61SBarry Smith @*/
4020d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type)
4021d71ae5a4SJacob Faibussowitsch {
4022264ace61SBarry Smith   PetscFunctionBegin;
4023264ace61SBarry Smith   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
40244f572ea9SToby Isaac   PetscAssertPointer(type, 2);
40259566063dSJacob Faibussowitsch   PetscCall(DMRegisterAll());
4026264ace61SBarry Smith   *type = ((PetscObject)dm)->type_name;
40273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4028264ace61SBarry Smith }
4029264ace61SBarry Smith 
40305d83a8b1SBarry Smith /*@
4031bb7acecfSBarry Smith   DMConvert - Converts a `DM` to another `DM`, either of the same or different type.
403267a56275SMatthew G Knepley 
403320f4b53cSBarry Smith   Collective
403467a56275SMatthew G Knepley 
403567a56275SMatthew G Knepley   Input Parameters:
4036bb7acecfSBarry Smith + dm      - the `DM`
4037bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type)
403867a56275SMatthew G Knepley 
403967a56275SMatthew G Knepley   Output Parameter:
4040bb7acecfSBarry Smith . M - pointer to new `DM`
404167a56275SMatthew G Knepley 
404220f4b53cSBarry Smith   Level: intermediate
404320f4b53cSBarry Smith 
404473ff1848SBarry Smith   Note:
4045bb7acecfSBarry Smith   Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential,
4046bb7acecfSBarry Smith   the MPI communicator of the generated `DM` is always the same as the communicator
4047bb7acecfSBarry Smith   of the input `DM`.
404867a56275SMatthew G Knepley 
40491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()`
405067a56275SMatthew G Knepley @*/
4051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M)
4052d71ae5a4SJacob Faibussowitsch {
405367a56275SMatthew G Knepley   DM        B;
405467a56275SMatthew G Knepley   char      convname[256];
4055c067b6caSMatthew G. Knepley   PetscBool sametype /*, issame */;
405667a56275SMatthew G Knepley 
405767a56275SMatthew G Knepley   PetscFunctionBegin;
405867a56275SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
405967a56275SMatthew G Knepley   PetscValidType(dm, 1);
40604f572ea9SToby Isaac   PetscAssertPointer(M, 3);
40619566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype));
40629566063dSJacob Faibussowitsch   /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */
4063c067b6caSMatthew G. Knepley   if (sametype) {
4064c067b6caSMatthew G. Knepley     *M = dm;
40659566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)dm));
40663ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
4067c067b6caSMatthew G. Knepley   } else {
40680298fd71SBarry Smith     PetscErrorCode (*conv)(DM, DMType, DM *) = NULL;
406967a56275SMatthew G Knepley 
407067a56275SMatthew G Knepley     /*
407167a56275SMatthew G Knepley        Order of precedence:
407267a56275SMatthew G Knepley        1) See if a specialized converter is known to the current DM.
407367a56275SMatthew G Knepley        2) See if a specialized converter is known to the desired DM class.
407467a56275SMatthew G Knepley        3) See if a good general converter is registered for the desired class
407567a56275SMatthew G Knepley        4) See if a good general converter is known for the current matrix.
407667a56275SMatthew G Knepley        5) Use a really basic converter.
407767a56275SMatthew G Knepley     */
407867a56275SMatthew G Knepley 
407967a56275SMatthew G Knepley     /* 1) See if a specialized converter is known to the current DM and the desired class */
40809566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40819566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40829566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40839566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40849566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40859566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv));
408667a56275SMatthew G Knepley     if (conv) goto foundconv;
408767a56275SMatthew G Knepley 
408867a56275SMatthew G Knepley     /* 2)  See if a specialized converter is known to the desired DM class. */
40899566063dSJacob Faibussowitsch     PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B));
40909566063dSJacob Faibussowitsch     PetscCall(DMSetType(B, newtype));
40919566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname)));
40929566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname)));
40939566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_", sizeof(convname)));
40949566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, newtype, sizeof(convname)));
40959566063dSJacob Faibussowitsch     PetscCall(PetscStrlcat(convname, "_C", sizeof(convname)));
40969566063dSJacob Faibussowitsch     PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv));
409767a56275SMatthew G Knepley     if (conv) {
40989566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&B));
409967a56275SMatthew G Knepley       goto foundconv;
410067a56275SMatthew G Knepley     }
410167a56275SMatthew G Knepley 
410267a56275SMatthew G Knepley #if 0
410367a56275SMatthew G Knepley     /* 3) See if a good general converter is registered for the desired class */
410467a56275SMatthew G Knepley     conv = B->ops->convertfrom;
41059566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&B));
410667a56275SMatthew G Knepley     if (conv) goto foundconv;
410767a56275SMatthew G Knepley 
410867a56275SMatthew G Knepley     /* 4) See if a good general converter is known for the current matrix */
410967a56275SMatthew G Knepley     if (dm->ops->convert) {
411067a56275SMatthew G Knepley       conv = dm->ops->convert;
411167a56275SMatthew G Knepley     }
411267a56275SMatthew G Knepley     if (conv) goto foundconv;
411367a56275SMatthew G Knepley #endif
411467a56275SMatthew G Knepley 
411567a56275SMatthew G Knepley     /* 5) Use a really basic converter. */
411698921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype);
411767a56275SMatthew G Knepley 
411867a56275SMatthew G Knepley   foundconv:
41199566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0));
41209566063dSJacob Faibussowitsch     PetscCall((*conv)(dm, newtype, M));
412112fa691eSMatthew G. Knepley     /* Things that are independent of DM type: We should consult DMClone() here */
412290b157c4SStefano Zampini     {
41234fb89dddSMatthew G. Knepley       const PetscReal *maxCell, *Lstart, *L;
41246858538eSMatthew G. Knepley 
41254fb89dddSMatthew G. Knepley       PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L));
41264fb89dddSMatthew G. Knepley       PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L));
4127c8a6034eSMark       (*M)->prealloc_only = dm->prealloc_only;
41289566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->vectype));
41299566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype));
41309566063dSJacob Faibussowitsch       PetscCall(PetscFree((*M)->mattype));
41319566063dSJacob Faibussowitsch       PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype));
413212fa691eSMatthew G. Knepley     }
41339566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0));
413467a56275SMatthew G Knepley   }
41359566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)*M));
41363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
413767a56275SMatthew G Knepley }
4138264ace61SBarry Smith 
4139264ace61SBarry Smith /*@C
4140bb7acecfSBarry Smith   DMRegister -  Adds a new `DM` type implementation
41411c84c290SBarry Smith 
4142cc4c1da9SBarry Smith   Not Collective, No Fortran Support
41431c84c290SBarry Smith 
41441c84c290SBarry Smith   Input Parameters:
414520f4b53cSBarry Smith + sname    - The name of a new user-defined creation routine
414620f4b53cSBarry Smith - function - The creation routine itself
414720f4b53cSBarry Smith 
414820f4b53cSBarry Smith   Level: advanced
41491c84c290SBarry Smith 
415073ff1848SBarry Smith   Note:
415120f4b53cSBarry Smith   `DMRegister()` may be called multiple times to add several user-defined `DM`s
41521c84c290SBarry Smith 
415360225df5SJacob Faibussowitsch   Example Usage:
41541c84c290SBarry Smith .vb
4155bdf89e91SBarry Smith     DMRegister("my_da", MyDMCreate);
41561c84c290SBarry Smith .ve
41571c84c290SBarry Smith 
415820f4b53cSBarry Smith   Then, your `DM` type can be chosen with the procedural interface via
41591c84c290SBarry Smith .vb
41601c84c290SBarry Smith     DMCreate(MPI_Comm, DM *);
41611c84c290SBarry Smith     DMSetType(DM,"my_da");
41621c84c290SBarry Smith .ve
41631c84c290SBarry Smith   or at runtime via the option
41641c84c290SBarry Smith .vb
41651c84c290SBarry Smith     -da_type my_da
41661c84c290SBarry Smith .ve
4167264ace61SBarry Smith 
41681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()`
4169264ace61SBarry Smith @*/
4170d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM))
4171d71ae5a4SJacob Faibussowitsch {
4172264ace61SBarry Smith   PetscFunctionBegin;
41739566063dSJacob Faibussowitsch   PetscCall(DMInitializePackage());
41749566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&DMList, sname, function));
41753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4176264ace61SBarry Smith }
4177264ace61SBarry Smith 
4178ffeef943SBarry Smith /*@
4179bb7acecfSBarry Smith   DMLoad - Loads a DM that has been stored in binary  with `DMView()`.
4180b859378eSBarry Smith 
418120f4b53cSBarry Smith   Collective
4182b859378eSBarry Smith 
4183b859378eSBarry Smith   Input Parameters:
4184bb7acecfSBarry Smith + newdm  - the newly loaded `DM`, this needs to have been created with `DMCreate()` or
4185bb7acecfSBarry Smith            some related function before a call to `DMLoad()`.
4186bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or
4187bb7acecfSBarry Smith            `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()`
4188b859378eSBarry Smith 
4189b859378eSBarry Smith   Level: intermediate
4190b859378eSBarry Smith 
4191b859378eSBarry Smith   Notes:
419255849f57SBarry Smith   The type is determined by the data in the file, any type set into the DM before this call is ignored.
4193b859378eSBarry Smith 
4194bb7acecfSBarry Smith   Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX`
4195bb7acecfSBarry Smith   meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()`
4196bb7acecfSBarry Smith   before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object.
4197cd7e8a5eSksagiyam 
41981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()`
4199b859378eSBarry Smith @*/
4200d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer)
4201d71ae5a4SJacob Faibussowitsch {
42029331c7a4SMatthew G. Knepley   PetscBool isbinary, ishdf5;
4203b859378eSBarry Smith 
4204b859378eSBarry Smith   PetscFunctionBegin;
4205b859378eSBarry Smith   PetscValidHeaderSpecific(newdm, DM_CLASSID, 1);
4206b859378eSBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
42079566063dSJacob Faibussowitsch   PetscCall(PetscViewerCheckReadable(viewer));
42089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
42099566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
42109566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0));
42119331c7a4SMatthew G. Knepley   if (isbinary) {
42129331c7a4SMatthew G. Knepley     PetscInt classid;
42139331c7a4SMatthew G. Knepley     char     type[256];
4214b859378eSBarry Smith 
42159566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT));
4216835f2295SStefano Zampini     PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %" PetscInt_FMT, classid);
42179566063dSJacob Faibussowitsch     PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR));
42189566063dSJacob Faibussowitsch     PetscCall(DMSetType(newdm, type));
4219dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
42209331c7a4SMatthew G. Knepley   } else if (ishdf5) {
4221dbbe0bcdSBarry Smith     PetscTryTypeMethod(newdm, load, viewer);
42229331c7a4SMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()");
42239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0));
42243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4225b859378eSBarry Smith }
4226b859378eSBarry Smith 
42274ee01570SBarry Smith /* FEM Support */
42287da65231SMatthew G Knepley 
42292ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[])
42302ecf6ec3SMatthew G. Knepley {
42312ecf6ec3SMatthew G. Knepley   PetscInt f;
42322ecf6ec3SMatthew G. Knepley 
42332ecf6ec3SMatthew G. Knepley   PetscFunctionBegin;
42342ecf6ec3SMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42352ecf6ec3SMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %" PetscInt_FMT " |\n", x[f]));
42362ecf6ec3SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42372ecf6ec3SMatthew G. Knepley }
42382ecf6ec3SMatthew G. Knepley 
4239d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[])
4240d71ae5a4SJacob Faibussowitsch {
42411d47ebbbSSatish Balay   PetscInt f;
42421b30c384SMatthew G Knepley 
42437da65231SMatthew G Knepley   PetscFunctionBegin;
424463a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
424548a46eb9SPierre Jolivet   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)PetscRealPart(x[f])));
42463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42477da65231SMatthew G Knepley }
42487da65231SMatthew G Knepley 
42495962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[])
42505962854dSMatthew G. Knepley {
42515962854dSMatthew G. Knepley   PetscInt f;
42525962854dSMatthew G. Knepley 
42535962854dSMatthew G. Knepley   PetscFunctionBegin;
42545962854dSMatthew G. Knepley   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42555962854dSMatthew G. Knepley   for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, "  | %g |\n", (double)x[f]));
42565962854dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
42575962854dSMatthew G. Knepley }
42585962854dSMatthew G. Knepley 
4259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[])
4260d71ae5a4SJacob Faibussowitsch {
42611b30c384SMatthew G Knepley   PetscInt f, g;
42627da65231SMatthew G Knepley 
42637da65231SMatthew G Knepley   PetscFunctionBegin;
426463a3b9bcSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name));
42651d47ebbbSSatish Balay   for (f = 0; f < rows; ++f) {
42669566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, "  |"));
426748a46eb9SPierre Jolivet     for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g])));
42689566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n"));
42697da65231SMatthew G Knepley   }
42703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42717da65231SMatthew G Knepley }
4272e7c4fc90SDmitry Karpeev 
4273d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X)
4274d71ae5a4SJacob Faibussowitsch {
42750c5b8624SToby Isaac   PetscInt           localSize, bs;
42760c5b8624SToby Isaac   PetscMPIInt        size;
42770c5b8624SToby Isaac   Vec                x, xglob;
42780c5b8624SToby Isaac   const PetscScalar *xarray;
4279e759306cSMatthew G. Knepley 
4280e759306cSMatthew G. Knepley   PetscFunctionBegin;
42819566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size));
42829566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X, &x));
42839566063dSJacob Faibussowitsch   PetscCall(VecCopy(X, x));
428493ec0da9SPierre Jolivet   PetscCall(VecFilter(x, tol));
42859566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name));
42860c5b8624SToby Isaac   if (size > 1) {
42879566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(x, &localSize));
42889566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xarray));
42899566063dSJacob Faibussowitsch     PetscCall(VecGetBlockSize(x, &bs));
42909566063dSJacob Faibussowitsch     PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob));
42910c5b8624SToby Isaac   } else {
42920c5b8624SToby Isaac     xglob = x;
42930c5b8624SToby Isaac   }
42949566063dSJacob Faibussowitsch   PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm))));
42950c5b8624SToby Isaac   if (size > 1) {
42969566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xglob));
42979566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xarray));
42980c5b8624SToby Isaac   }
42999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
43003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4301e759306cSMatthew G. Knepley }
4302e759306cSMatthew G. Knepley 
430388ed4aceSMatthew G Knepley /*@
4304bb7acecfSBarry Smith   DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`.
430588ed4aceSMatthew G Knepley 
430688ed4aceSMatthew G Knepley   Input Parameter:
4307bb7acecfSBarry Smith . dm - The `DM`
430888ed4aceSMatthew G Knepley 
430988ed4aceSMatthew G Knepley   Output Parameter:
4310bb7acecfSBarry Smith . section - The `PetscSection`
431188ed4aceSMatthew G Knepley 
431220f4b53cSBarry Smith   Options Database Key:
4313bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM`
4314e5893cccSMatthew G. Knepley 
431588ed4aceSMatthew G Knepley   Level: intermediate
431688ed4aceSMatthew G Knepley 
4317bb7acecfSBarry Smith   Note:
4318bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
431988ed4aceSMatthew G Knepley 
43201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()`
432188ed4aceSMatthew G Knepley @*/
4322d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section)
4323d71ae5a4SJacob Faibussowitsch {
432488ed4aceSMatthew G Knepley   PetscFunctionBegin;
432588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
43264f572ea9SToby Isaac   PetscAssertPointer(section, 2);
43271bb6d2a8SBarry Smith   if (!dm->localSection && dm->ops->createlocalsection) {
4328e5e52638SMatthew G. Knepley     PetscInt d;
4329e5e52638SMatthew G. Knepley 
433045480ffeSMatthew G. Knepley     if (dm->setfromoptionscalled) {
433145480ffeSMatthew G. Knepley       PetscObject       obj = (PetscObject)dm;
433245480ffeSMatthew G. Knepley       PetscViewer       viewer;
433345480ffeSMatthew G. Knepley       PetscViewerFormat format;
433445480ffeSMatthew G. Knepley       PetscBool         flg;
433545480ffeSMatthew G. Knepley 
4336648c30bcSBarry Smith       PetscCall(PetscOptionsCreateViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg));
43379566063dSJacob Faibussowitsch       if (flg) PetscCall(PetscViewerPushFormat(viewer, format));
433845480ffeSMatthew G. Knepley       for (d = 0; d < dm->Nds; ++d) {
43399566063dSJacob Faibussowitsch         PetscCall(PetscDSSetFromOptions(dm->probs[d].ds));
43409566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer));
434145480ffeSMatthew G. Knepley       }
434245480ffeSMatthew G. Knepley       if (flg) {
43439566063dSJacob Faibussowitsch         PetscCall(PetscViewerFlush(viewer));
43449566063dSJacob Faibussowitsch         PetscCall(PetscViewerPopFormat(viewer));
4345648c30bcSBarry Smith         PetscCall(PetscViewerDestroy(&viewer));
434645480ffeSMatthew G. Knepley       }
434745480ffeSMatthew G. Knepley     }
4348dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm, createlocalsection);
43499566063dSJacob Faibussowitsch     if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view"));
43502f0f8703SMatthew G. Knepley   }
43511bb6d2a8SBarry Smith   *section = dm->localSection;
43523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
435388ed4aceSMatthew G Knepley }
435488ed4aceSMatthew G Knepley 
435588ed4aceSMatthew G Knepley /*@
4356bb7acecfSBarry Smith   DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`.
435788ed4aceSMatthew G Knepley 
435888ed4aceSMatthew G Knepley   Input Parameters:
4359bb7acecfSBarry Smith + dm      - The `DM`
4360bb7acecfSBarry Smith - section - The `PetscSection`
436188ed4aceSMatthew G Knepley 
436288ed4aceSMatthew G Knepley   Level: intermediate
436388ed4aceSMatthew G Knepley 
4364bb7acecfSBarry Smith   Note:
4365bb7acecfSBarry Smith   Any existing Section will be destroyed
436688ed4aceSMatthew G Knepley 
43671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()`
436888ed4aceSMatthew G Knepley @*/
4369d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section)
4370d71ae5a4SJacob Faibussowitsch {
4371c473ab19SMatthew G. Knepley   PetscInt numFields = 0;
4372af122d2aSMatthew G Knepley   PetscInt f;
437388ed4aceSMatthew G Knepley 
437488ed4aceSMatthew G Knepley   PetscFunctionBegin;
437588ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4376b9d85ea2SLisandro Dalcin   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
43779566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
43789566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->localSection));
43791bb6d2a8SBarry Smith   dm->localSection = section;
43809566063dSJacob Faibussowitsch   if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields));
4381af122d2aSMatthew G Knepley   if (numFields) {
43829566063dSJacob Faibussowitsch     PetscCall(DMSetNumFields(dm, numFields));
4383af122d2aSMatthew G Knepley     for (f = 0; f < numFields; ++f) {
43840f21e855SMatthew G. Knepley       PetscObject disc;
4385af122d2aSMatthew G Knepley       const char *name;
4386af122d2aSMatthew G Knepley 
43879566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name));
43889566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, &disc));
43899566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName(disc, name));
4390af122d2aSMatthew G Knepley     }
4391af122d2aSMatthew G Knepley   }
439250350c8eSStefano Zampini   /* The global section and the SectionSF will be rebuilt
439350350c8eSStefano Zampini      in the next call to DMGetGlobalSection() and DMGetSectionSF(). */
43949566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
439550350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
439652947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
439750350c8eSStefano Zampini 
439850350c8eSStefano Zampini   /* Clear scratch vectors */
439950350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
440050350c8eSStefano Zampini   PetscCall(DMClearLocalVectors(dm));
440150350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
440250350c8eSStefano Zampini   PetscCall(DMClearNamedLocalVectors(dm));
44033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
440488ed4aceSMatthew G Knepley }
440588ed4aceSMatthew G Knepley 
4406adc21957SMatthew G. Knepley /*@C
4407d8b4a066SPierre Jolivet   DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a block structure.
4408adc21957SMatthew G. Knepley 
4409adc21957SMatthew G. Knepley   Input Parameter:
4410adc21957SMatthew G. Knepley . dm - The `DM`
4411adc21957SMatthew G. Knepley 
44129cde84edSJose E. Roman   Output Parameters:
4413adc21957SMatthew G. Knepley + perm        - A permutation of the mesh points in the chart
4414b6971eaeSBarry Smith - blockStarts - A high bit is set for the point that begins every block, or `NULL` for default blocking
4415adc21957SMatthew G. Knepley 
4416adc21957SMatthew G. Knepley   Level: developer
4417adc21957SMatthew G. Knepley 
4418adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()`
4419adc21957SMatthew G. Knepley @*/
4420adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts)
4421adc21957SMatthew G. Knepley {
4422adc21957SMatthew G. Knepley   PetscFunctionBegin;
4423adc21957SMatthew G. Knepley   *perm        = NULL;
4424adc21957SMatthew G. Knepley   *blockStarts = NULL;
4425adc21957SMatthew G. Knepley   PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts);
4426adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
4427adc21957SMatthew G. Knepley }
4428adc21957SMatthew G. Knepley 
44299435951eSToby Isaac /*@
4430bb7acecfSBarry Smith   DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation.
44319435951eSToby Isaac 
443220f4b53cSBarry Smith   not Collective
4433e228b242SToby Isaac 
44349435951eSToby Isaac   Input Parameter:
4435bb7acecfSBarry Smith . dm - The `DM`
44369435951eSToby Isaac 
4437d8d19677SJose E. Roman   Output Parameters:
443820f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Returns `NULL` if there are no local constraints.
443920f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section.  Returns `NULL` if there are no local constraints.
444079769bd5SJed Brown - bias    - Vector containing bias to be added to constrained dofs
44419435951eSToby Isaac 
44429435951eSToby Isaac   Level: advanced
44439435951eSToby Isaac 
4444bb7acecfSBarry Smith   Note:
4445bb7acecfSBarry Smith   This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`.
44469435951eSToby Isaac 
44471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()`
44489435951eSToby Isaac @*/
4449d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias)
4450d71ae5a4SJacob Faibussowitsch {
44519435951eSToby Isaac   PetscFunctionBegin;
44529435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4453dbbe0bcdSBarry Smith   if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints);
44543b8ba7d1SJed Brown   if (section) *section = dm->defaultConstraint.section;
44553b8ba7d1SJed Brown   if (mat) *mat = dm->defaultConstraint.mat;
445679769bd5SJed Brown   if (bias) *bias = dm->defaultConstraint.bias;
44573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
44589435951eSToby Isaac }
44599435951eSToby Isaac 
44609435951eSToby Isaac /*@
4461bb7acecfSBarry Smith   DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation.
44629435951eSToby Isaac 
446320f4b53cSBarry Smith   Collective
4464e228b242SToby Isaac 
44659435951eSToby Isaac   Input Parameters:
4466bb7acecfSBarry Smith + dm      - The `DM`
4467bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
446820f4b53cSBarry Smith . mat     - The `Mat` that interpolates local constraints: its width should be the layout size of the default section:  `NULL` indicates no constraints.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
446920f4b53cSBarry Smith - bias    - A bias vector to be added to constrained values in the local vector.  `NULL` indicates no bias.  Must have a local communicator (`PETSC_COMM_SELF` or derivative).
44709435951eSToby Isaac 
44719435951eSToby Isaac   Level: advanced
44729435951eSToby Isaac 
447320f4b53cSBarry Smith   Notes:
447420f4b53cSBarry Smith   If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`.  Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`.
447520f4b53cSBarry Smith 
447620f4b53cSBarry Smith   If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`.  Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above.  Any bias, if specified, is ignored when accumulating.
447720f4b53cSBarry Smith 
4478bb7acecfSBarry Smith   This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them.
44799435951eSToby Isaac 
44801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()`
44819435951eSToby Isaac @*/
4482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias)
4483d71ae5a4SJacob Faibussowitsch {
4484e228b242SToby Isaac   PetscMPIInt result;
44859435951eSToby Isaac 
44869435951eSToby Isaac   PetscFunctionBegin;
44879435951eSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4488e228b242SToby Isaac   if (section) {
4489e228b242SToby Isaac     PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
44909566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result));
44917a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator");
4492e228b242SToby Isaac   }
4493e228b242SToby Isaac   if (mat) {
4494e228b242SToby Isaac     PetscValidHeaderSpecific(mat, MAT_CLASSID, 3);
44959566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result));
44967a8be351SBarry Smith     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator");
4497e228b242SToby Isaac   }
449879769bd5SJed Brown   if (bias) {
449979769bd5SJed Brown     PetscValidHeaderSpecific(bias, VEC_CLASSID, 4);
45009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result));
450179769bd5SJed Brown     PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator");
450279769bd5SJed Brown   }
45039566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
45049566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section));
45053b8ba7d1SJed Brown   dm->defaultConstraint.section = section;
45069566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)mat));
45079566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&dm->defaultConstraint.mat));
45083b8ba7d1SJed Brown   dm->defaultConstraint.mat = mat;
45099566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)bias));
45109566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&dm->defaultConstraint.bias));
451179769bd5SJed Brown   dm->defaultConstraint.bias = bias;
45123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
45139435951eSToby Isaac }
45149435951eSToby Isaac 
4515497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
4516507e4973SMatthew G. Knepley /*
4517bb7acecfSBarry Smith   DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent.
4518507e4973SMatthew G. Knepley 
4519507e4973SMatthew G. Knepley   Input Parameters:
4520bb7acecfSBarry Smith + dm - The `DM`
4521bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout
4522bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
4523507e4973SMatthew G. Knepley 
4524507e4973SMatthew G. Knepley   Level: intermediate
4525507e4973SMatthew G. Knepley 
45261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`
4527507e4973SMatthew G. Knepley */
4528d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection)
4529d71ae5a4SJacob Faibussowitsch {
4530507e4973SMatthew G. Knepley   MPI_Comm        comm;
4531507e4973SMatthew G. Knepley   PetscLayout     layout;
4532507e4973SMatthew G. Knepley   const PetscInt *ranges;
4533507e4973SMatthew G. Knepley   PetscInt        pStart, pEnd, p, nroots;
4534507e4973SMatthew G. Knepley   PetscMPIInt     size, rank;
4535507e4973SMatthew G. Knepley   PetscBool       valid = PETSC_TRUE, gvalid;
4536507e4973SMatthew G. Knepley 
4537507e4973SMatthew G. Knepley   PetscFunctionBegin;
45389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
4539507e4973SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
45419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
45429566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd));
45439566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots));
45449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &layout));
45459566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(layout, 1));
45469566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(layout, nroots));
45479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(layout));
45489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(layout, &ranges));
4549507e4973SMatthew G. Knepley   for (p = pStart; p < pEnd; ++p) {
4550f741bcd2SMatthew G. Knepley     PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d;
4551507e4973SMatthew G. Knepley 
45529566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(localSection, p, &dof));
45539566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(localSection, p, &off));
45549566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof));
45559566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(globalSection, p, &gdof));
45569566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof));
45579566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(globalSection, p, &goff));
4558507e4973SMatthew G. Knepley     if (!gdof) continue; /* Censored point */
45599371c9d4SSatish Balay     if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) {
45609371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof));
45619371c9d4SSatish Balay       valid = PETSC_FALSE;
45629371c9d4SSatish Balay     }
45639371c9d4SSatish Balay     if (gcdof && (gcdof != cdof)) {
45649371c9d4SSatish Balay       PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof));
45659371c9d4SSatish Balay       valid = PETSC_FALSE;
45669371c9d4SSatish Balay     }
4567507e4973SMatthew G. Knepley     if (gdof < 0) {
4568507e4973SMatthew G. Knepley       gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof;
4569507e4973SMatthew G. Knepley       for (d = 0; d < gsize; ++d) {
4570507e4973SMatthew G. Knepley         PetscInt offset = -(goff + 1) + d, r;
4571507e4973SMatthew G. Knepley 
45729566063dSJacob Faibussowitsch         PetscCall(PetscFindInt(offset, size + 1, ranges, &r));
4573507e4973SMatthew G. Knepley         if (r < 0) r = -(r + 2);
45749371c9d4SSatish Balay         if ((r < 0) || (r >= size)) {
45759371c9d4SSatish Balay           PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff));
45769371c9d4SSatish Balay           valid = PETSC_FALSE;
45779371c9d4SSatish Balay           break;
45789371c9d4SSatish Balay         }
4579507e4973SMatthew G. Knepley       }
4580507e4973SMatthew G. Knepley     }
4581507e4973SMatthew G. Knepley   }
45829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&layout));
45839566063dSJacob Faibussowitsch   PetscCall(PetscSynchronizedFlush(comm, NULL));
4584462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm));
4585507e4973SMatthew G. Knepley   if (!gvalid) {
45869566063dSJacob Faibussowitsch     PetscCall(DMView(dm, NULL));
4587507e4973SMatthew G. Knepley     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections");
4588507e4973SMatthew G. Knepley   }
45893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4590507e4973SMatthew G. Knepley }
4591f741bcd2SMatthew G. Knepley #endif
4592507e4973SMatthew G. Knepley 
459390df3356SJames Wright PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf)
45946725e60dSJed Brown {
45956725e60dSJed Brown   PetscErrorCode (*f)(DM, PetscSF *);
45964d86920dSPierre Jolivet 
45976725e60dSJed Brown   PetscFunctionBegin;
45986725e60dSJed Brown   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
45994f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
46005f06a3ddSJed Brown   PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f));
46016725e60dSJed Brown   if (f) PetscCall(f(dm, sf));
46026725e60dSJed Brown   else *sf = dm->sf;
46033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
46046725e60dSJed Brown }
46056725e60dSJed Brown 
460688ed4aceSMatthew G Knepley /*@
4607bb7acecfSBarry Smith   DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`.
460888ed4aceSMatthew G Knepley 
460920f4b53cSBarry Smith   Collective
46108b1ab98fSJed Brown 
461188ed4aceSMatthew G Knepley   Input Parameter:
4612bb7acecfSBarry Smith . dm - The `DM`
461388ed4aceSMatthew G Knepley 
461488ed4aceSMatthew G Knepley   Output Parameter:
4615bb7acecfSBarry Smith . section - The `PetscSection`
461688ed4aceSMatthew G Knepley 
461788ed4aceSMatthew G Knepley   Level: intermediate
461888ed4aceSMatthew G Knepley 
4619bb7acecfSBarry Smith   Note:
4620bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSection`.
462188ed4aceSMatthew G Knepley 
46221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`
462388ed4aceSMatthew G Knepley @*/
4624d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section)
4625d71ae5a4SJacob Faibussowitsch {
462688ed4aceSMatthew G Knepley   PetscFunctionBegin;
462788ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46284f572ea9SToby Isaac   PetscAssertPointer(section, 2);
46291bb6d2a8SBarry Smith   if (!dm->globalSection) {
4630fd59a867SMatthew G. Knepley     PetscSection s;
46316725e60dSJed Brown     PetscSF      sf;
4632fd59a867SMatthew G. Knepley 
46339566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &s));
46347a8be351SBarry Smith     PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection");
46357a8be351SBarry Smith     PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection");
46365f06a3ddSJed Brown     PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf));
4637eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection));
46389566063dSJacob Faibussowitsch     PetscCall(PetscLayoutDestroy(&dm->map));
46399566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map));
46409566063dSJacob Faibussowitsch     PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view"));
464188ed4aceSMatthew G Knepley   }
46421bb6d2a8SBarry Smith   *section = dm->globalSection;
46433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464488ed4aceSMatthew G Knepley }
464588ed4aceSMatthew G Knepley 
4646b21d0597SMatthew G Knepley /*@
4647bb7acecfSBarry Smith   DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`.
4648b21d0597SMatthew G Knepley 
4649b21d0597SMatthew G Knepley   Input Parameters:
4650bb7acecfSBarry Smith + dm      - The `DM`
46512fe279fdSBarry Smith - section - The PetscSection, or `NULL`
4652b21d0597SMatthew G Knepley 
4653b21d0597SMatthew G Knepley   Level: intermediate
4654b21d0597SMatthew G Knepley 
4655bb7acecfSBarry Smith   Note:
4656bb7acecfSBarry Smith   Any existing `PetscSection` will be destroyed
4657b21d0597SMatthew G Knepley 
46581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()`
4659b21d0597SMatthew G Knepley @*/
4660d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section)
4661d71ae5a4SJacob Faibussowitsch {
4662b21d0597SMatthew G Knepley   PetscFunctionBegin;
4663b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
46645080bbdbSMatthew G Knepley   if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2);
46659566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)section));
46669566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&dm->globalSection));
46671bb6d2a8SBarry Smith   dm->globalSection = section;
4668497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG)
46699566063dSJacob Faibussowitsch   if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section));
4670507e4973SMatthew G. Knepley #endif
467150350c8eSStefano Zampini   /* Clear global scratch vectors and sectionSF */
467250350c8eSStefano Zampini   PetscCall(PetscSFDestroy(&dm->sectionSF));
467352947b74SStefano Zampini   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
467450350c8eSStefano Zampini   PetscCall(DMClearGlobalVectors(dm));
467550350c8eSStefano Zampini   PetscCall(DMClearNamedGlobalVectors(dm));
46763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4677b21d0597SMatthew G Knepley }
4678b21d0597SMatthew G Knepley 
467988ed4aceSMatthew G Knepley /*@
4680bb7acecfSBarry Smith   DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set,
4681bb7acecfSBarry Smith   it is created from the default `PetscSection` layouts in the `DM`.
468288ed4aceSMatthew G Knepley 
468388ed4aceSMatthew G Knepley   Input Parameter:
4684bb7acecfSBarry Smith . dm - The `DM`
468588ed4aceSMatthew G Knepley 
468688ed4aceSMatthew G Knepley   Output Parameter:
4687bb7acecfSBarry Smith . sf - The `PetscSF`
468888ed4aceSMatthew G Knepley 
468988ed4aceSMatthew G Knepley   Level: intermediate
469088ed4aceSMatthew G Knepley 
4691bb7acecfSBarry Smith   Note:
4692bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
469388ed4aceSMatthew G Knepley 
46941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()`
469588ed4aceSMatthew G Knepley @*/
4696d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf)
4697d71ae5a4SJacob Faibussowitsch {
469888ed4aceSMatthew G Knepley   PetscInt nroots;
469988ed4aceSMatthew G Knepley 
470088ed4aceSMatthew G Knepley   PetscFunctionBegin;
470188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47024f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
470348a46eb9SPierre Jolivet   if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF));
47049566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL));
470588ed4aceSMatthew G Knepley   if (nroots < 0) {
470688ed4aceSMatthew G Knepley     PetscSection section, gSection;
470788ed4aceSMatthew G Knepley 
47089566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dm, &section));
470931ea6d37SMatthew G Knepley     if (section) {
47109566063dSJacob Faibussowitsch       PetscCall(DMGetGlobalSection(dm, &gSection));
47119566063dSJacob Faibussowitsch       PetscCall(DMCreateSectionSF(dm, section, gSection));
471231ea6d37SMatthew G Knepley     } else {
47130298fd71SBarry Smith       *sf = NULL;
47143ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
471531ea6d37SMatthew G Knepley     }
471688ed4aceSMatthew G Knepley   }
47171bb6d2a8SBarry Smith   *sf = dm->sectionSF;
47183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471988ed4aceSMatthew G Knepley }
472088ed4aceSMatthew G Knepley 
472188ed4aceSMatthew G Knepley /*@
4722bb7acecfSBarry Smith   DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM`
472388ed4aceSMatthew G Knepley 
472488ed4aceSMatthew G Knepley   Input Parameters:
4725bb7acecfSBarry Smith + dm - The `DM`
4726bb7acecfSBarry Smith - sf - The `PetscSF`
472788ed4aceSMatthew G Knepley 
472888ed4aceSMatthew G Knepley   Level: intermediate
472988ed4aceSMatthew G Knepley 
4730bb7acecfSBarry Smith   Note:
4731bb7acecfSBarry Smith   Any previous `PetscSF` is destroyed
473288ed4aceSMatthew G Knepley 
47331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()`
473488ed4aceSMatthew G Knepley @*/
4735d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf)
4736d71ae5a4SJacob Faibussowitsch {
473788ed4aceSMatthew G Knepley   PetscFunctionBegin;
473888ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4739b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
47409566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
47419566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sectionSF));
47421bb6d2a8SBarry Smith   dm->sectionSF = sf;
47433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
474488ed4aceSMatthew G Knepley }
474588ed4aceSMatthew G Knepley 
4746cc4c1da9SBarry Smith /*@
4747bb7acecfSBarry Smith   DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s
474888ed4aceSMatthew G Knepley   describing the data layout.
474988ed4aceSMatthew G Knepley 
475088ed4aceSMatthew G Knepley   Input Parameters:
4751bb7acecfSBarry Smith + dm            - The `DM`
4752bb7acecfSBarry Smith . localSection  - `PetscSection` describing the local data layout
4753bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout
475488ed4aceSMatthew G Knepley 
47551bb6d2a8SBarry Smith   Level: developer
47561bb6d2a8SBarry Smith 
4757bb7acecfSBarry Smith   Note:
4758bb7acecfSBarry Smith   One usually uses `DMGetSectionSF()` to obtain the `PetscSF`
4759bb7acecfSBarry Smith 
476073ff1848SBarry Smith   Developer Note:
4761bb7acecfSBarry Smith   Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF`
4762bb7acecfSBarry Smith   directly into the `DM`, perhaps this function should not take the local and global sections as
4763b6971eaeSBarry Smith   input and should just obtain them from the `DM`? Plus PETSc creation functions return the thing
4764b6971eaeSBarry Smith   they create, this returns nothing
47651bb6d2a8SBarry Smith 
47661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()`
476788ed4aceSMatthew G Knepley @*/
4768d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection)
4769d71ae5a4SJacob Faibussowitsch {
477088ed4aceSMatthew G Knepley   PetscFunctionBegin;
477188ed4aceSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47729566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection));
47733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
477488ed4aceSMatthew G Knepley }
4775af122d2aSMatthew G Knepley 
4776b21d0597SMatthew G Knepley /*@
4777bb7acecfSBarry Smith   DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`.
4778bb7acecfSBarry Smith 
4779bb7acecfSBarry Smith   Not collective but the resulting `PetscSF` is collective
4780b21d0597SMatthew G Knepley 
4781b21d0597SMatthew G Knepley   Input Parameter:
4782bb7acecfSBarry Smith . dm - The `DM`
4783b21d0597SMatthew G Knepley 
4784b21d0597SMatthew G Knepley   Output Parameter:
4785bb7acecfSBarry Smith . sf - The `PetscSF`
4786b21d0597SMatthew G Knepley 
4787b21d0597SMatthew G Knepley   Level: intermediate
4788b21d0597SMatthew G Knepley 
4789bb7acecfSBarry Smith   Note:
4790bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
4791b21d0597SMatthew G Knepley 
47921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4793b21d0597SMatthew G Knepley @*/
4794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf)
4795d71ae5a4SJacob Faibussowitsch {
4796b21d0597SMatthew G Knepley   PetscFunctionBegin;
4797b21d0597SMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
47984f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
4799b21d0597SMatthew G Knepley   *sf = dm->sf;
48003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4801b21d0597SMatthew G Knepley }
4802b21d0597SMatthew G Knepley 
4803057b4bcdSMatthew G Knepley /*@
4804bb7acecfSBarry Smith   DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`.
4805bb7acecfSBarry Smith 
480620f4b53cSBarry Smith   Collective
4807057b4bcdSMatthew G Knepley 
4808057b4bcdSMatthew G Knepley   Input Parameters:
4809bb7acecfSBarry Smith + dm - The `DM`
4810bb7acecfSBarry Smith - sf - The `PetscSF`
4811057b4bcdSMatthew G Knepley 
4812057b4bcdSMatthew G Knepley   Level: intermediate
4813057b4bcdSMatthew G Knepley 
48141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()`
4815057b4bcdSMatthew G Knepley @*/
4816d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf)
4817d71ae5a4SJacob Faibussowitsch {
4818057b4bcdSMatthew G Knepley   PetscFunctionBegin;
4819057b4bcdSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
4820b9d85ea2SLisandro Dalcin   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48219566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48229566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sf));
4823057b4bcdSMatthew G Knepley   dm->sf = sf;
48243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4825057b4bcdSMatthew G Knepley }
4826057b4bcdSMatthew G Knepley 
48274f37162bSMatthew G. Knepley /*@
4828bb7acecfSBarry Smith   DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering
48294f37162bSMatthew G. Knepley 
48304f37162bSMatthew G. Knepley   Input Parameter:
4831bb7acecfSBarry Smith . dm - The `DM`
48324f37162bSMatthew G. Knepley 
48334f37162bSMatthew G. Knepley   Output Parameter:
4834bb7acecfSBarry Smith . sf - The `PetscSF`
48354f37162bSMatthew G. Knepley 
48364f37162bSMatthew G. Knepley   Level: intermediate
48374f37162bSMatthew G. Knepley 
4838bb7acecfSBarry Smith   Note:
4839bb7acecfSBarry Smith   This gets a borrowed reference, so the user should not destroy this `PetscSF`.
48404f37162bSMatthew G. Knepley 
48411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48424f37162bSMatthew G. Knepley @*/
4843d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf)
4844d71ae5a4SJacob Faibussowitsch {
48454f37162bSMatthew G. Knepley   PetscFunctionBegin;
48464f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48474f572ea9SToby Isaac   PetscAssertPointer(sf, 2);
48484f37162bSMatthew G. Knepley   *sf = dm->sfNatural;
48493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48504f37162bSMatthew G. Knepley }
48514f37162bSMatthew G. Knepley 
48524f37162bSMatthew G. Knepley /*@
48534f37162bSMatthew G. Knepley   DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering
48544f37162bSMatthew G. Knepley 
48554f37162bSMatthew G. Knepley   Input Parameters:
48564f37162bSMatthew G. Knepley + dm - The DM
48574f37162bSMatthew G. Knepley - sf - The PetscSF
48584f37162bSMatthew G. Knepley 
48594f37162bSMatthew G. Knepley   Level: intermediate
48604f37162bSMatthew G. Knepley 
48611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()`
48624f37162bSMatthew G. Knepley @*/
4863d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf)
4864d71ae5a4SJacob Faibussowitsch {
48654f37162bSMatthew G. Knepley   PetscFunctionBegin;
48664f37162bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
48674f37162bSMatthew G. Knepley   if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2);
48689566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)sf));
48699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&dm->sfNatural));
48704f37162bSMatthew G. Knepley   dm->sfNatural = sf;
48713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
48724f37162bSMatthew G. Knepley }
48734f37162bSMatthew G. Knepley 
4874d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc)
4875d71ae5a4SJacob Faibussowitsch {
487634aa8a36SMatthew G. Knepley   PetscClassId id;
487734aa8a36SMatthew G. Knepley 
487834aa8a36SMatthew G. Knepley   PetscFunctionBegin;
48799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetClassId(disc, &id));
488034aa8a36SMatthew G. Knepley   if (id == PETSCFE_CLASSID) {
48819566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
488234aa8a36SMatthew G. Knepley   } else if (id == PETSCFV_CLASSID) {
48839566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE));
488417c1d62eSMatthew G. Knepley   } else {
48859566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE));
488634aa8a36SMatthew G. Knepley   }
48873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
488834aa8a36SMatthew G. Knepley }
488934aa8a36SMatthew G. Knepley 
4890d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew)
4891d71ae5a4SJacob Faibussowitsch {
489244a7f3ddSMatthew G. Knepley   RegionField *tmpr;
489344a7f3ddSMatthew G. Knepley   PetscInt     Nf = dm->Nf, f;
489444a7f3ddSMatthew G. Knepley 
489544a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
48963ba16761SJacob Faibussowitsch   if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS);
48979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NfNew, &tmpr));
489844a7f3ddSMatthew G. Knepley   for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f];
48999371c9d4SSatish Balay   for (f = Nf; f < NfNew; ++f) {
49009371c9d4SSatish Balay     tmpr[f].disc        = NULL;
49019371c9d4SSatish Balay     tmpr[f].label       = NULL;
49029371c9d4SSatish Balay     tmpr[f].avoidTensor = PETSC_FALSE;
49039371c9d4SSatish Balay   }
49049566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
490544a7f3ddSMatthew G. Knepley   dm->Nf     = NfNew;
490644a7f3ddSMatthew G. Knepley   dm->fields = tmpr;
49073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
490844a7f3ddSMatthew G. Knepley }
490944a7f3ddSMatthew G. Knepley 
491044a7f3ddSMatthew G. Knepley /*@
491120f4b53cSBarry Smith   DMClearFields - Remove all fields from the `DM`
491244a7f3ddSMatthew G. Knepley 
491320f4b53cSBarry Smith   Logically Collective
491444a7f3ddSMatthew G. Knepley 
491544a7f3ddSMatthew G. Knepley   Input Parameter:
491620f4b53cSBarry Smith . dm - The `DM`
491744a7f3ddSMatthew G. Knepley 
491844a7f3ddSMatthew G. Knepley   Level: intermediate
491944a7f3ddSMatthew G. Knepley 
49201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()`
492144a7f3ddSMatthew G. Knepley @*/
4922d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm)
4923d71ae5a4SJacob Faibussowitsch {
492444a7f3ddSMatthew G. Knepley   PetscInt f;
492544a7f3ddSMatthew G. Knepley 
492644a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
492744a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49284c4edb6fSBarry Smith   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); // DMDA does not use fields field in DM
492944a7f3ddSMatthew G. Knepley   for (f = 0; f < dm->Nf; ++f) {
49309566063dSJacob Faibussowitsch     PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
49319566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->fields[f].label));
493244a7f3ddSMatthew G. Knepley   }
49339566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->fields));
493444a7f3ddSMatthew G. Knepley   dm->fields = NULL;
493544a7f3ddSMatthew G. Knepley   dm->Nf     = 0;
49363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
493744a7f3ddSMatthew G. Knepley }
493844a7f3ddSMatthew G. Knepley 
4939689b5837SMatthew G. Knepley /*@
494020f4b53cSBarry Smith   DMGetNumFields - Get the number of fields in the `DM`
4941689b5837SMatthew G. Knepley 
494220f4b53cSBarry Smith   Not Collective
4943689b5837SMatthew G. Knepley 
4944689b5837SMatthew G. Knepley   Input Parameter:
494520f4b53cSBarry Smith . dm - The `DM`
4946689b5837SMatthew G. Knepley 
4947689b5837SMatthew G. Knepley   Output Parameter:
494860225df5SJacob Faibussowitsch . numFields - The number of fields
4949689b5837SMatthew G. Knepley 
4950689b5837SMatthew G. Knepley   Level: intermediate
4951689b5837SMatthew G. Knepley 
49521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()`
4953689b5837SMatthew G. Knepley @*/
4954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields)
4955d71ae5a4SJacob Faibussowitsch {
49560f21e855SMatthew G. Knepley   PetscFunctionBegin;
49570f21e855SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49584f572ea9SToby Isaac   PetscAssertPointer(numFields, 2);
495944a7f3ddSMatthew G. Knepley   *numFields = dm->Nf;
49603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4961af122d2aSMatthew G Knepley }
4962af122d2aSMatthew G Knepley 
4963689b5837SMatthew G. Knepley /*@
496420f4b53cSBarry Smith   DMSetNumFields - Set the number of fields in the `DM`
4965689b5837SMatthew G. Knepley 
496620f4b53cSBarry Smith   Logically Collective
4967689b5837SMatthew G. Knepley 
4968689b5837SMatthew G. Knepley   Input Parameters:
496920f4b53cSBarry Smith + dm        - The `DM`
497060225df5SJacob Faibussowitsch - numFields - The number of fields
4971689b5837SMatthew G. Knepley 
4972689b5837SMatthew G. Knepley   Level: intermediate
4973689b5837SMatthew G. Knepley 
49741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()`
4975689b5837SMatthew G. Knepley @*/
4976d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields)
4977d71ae5a4SJacob Faibussowitsch {
49780f21e855SMatthew G. Knepley   PetscInt Nf, f;
4979af122d2aSMatthew G Knepley 
4980af122d2aSMatthew G Knepley   PetscFunctionBegin;
4981af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
49829566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
49830f21e855SMatthew G. Knepley   for (f = Nf; f < numFields; ++f) {
49840f21e855SMatthew G. Knepley     PetscContainer obj;
49850f21e855SMatthew G. Knepley 
49869566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj));
49879566063dSJacob Faibussowitsch     PetscCall(DMAddField(dm, NULL, (PetscObject)obj));
49889566063dSJacob Faibussowitsch     PetscCall(PetscContainerDestroy(&obj));
4989af122d2aSMatthew G Knepley   }
49903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4991af122d2aSMatthew G Knepley }
4992af122d2aSMatthew G Knepley 
4993c1929be8SMatthew G. Knepley /*@
4994bb7acecfSBarry Smith   DMGetField - Return the `DMLabel` and discretization object for a given `DM` field
4995c1929be8SMatthew G. Knepley 
499620f4b53cSBarry Smith   Not Collective
4997c1929be8SMatthew G. Knepley 
4998c1929be8SMatthew G. Knepley   Input Parameters:
4999bb7acecfSBarry Smith + dm - The `DM`
5000c1929be8SMatthew G. Knepley - f  - The field number
5001c1929be8SMatthew G. Knepley 
500244a7f3ddSMatthew G. Knepley   Output Parameters:
500320f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed)
500420f4b53cSBarry Smith - disc  - The discretization object (pass in `NULL` if not needed)
5005c1929be8SMatthew G. Knepley 
500644a7f3ddSMatthew G. Knepley   Level: intermediate
5007c1929be8SMatthew G. Knepley 
50081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`
5009c1929be8SMatthew G. Knepley @*/
5010d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc)
5011d71ae5a4SJacob Faibussowitsch {
5012af122d2aSMatthew G Knepley   PetscFunctionBegin;
5013af122d2aSMatthew G Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
50144f572ea9SToby Isaac   PetscAssertPointer(disc, 4);
50157a8be351SBarry Smith   PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf);
50164c4edb6fSBarry Smith   if (!dm->fields) {
50174c4edb6fSBarry Smith     if (label) *label = NULL;
50184c4edb6fSBarry Smith     if (disc) *disc = NULL;
50194c4edb6fSBarry Smith   } else { // some DM such as DMDA do not have dm->fields
502044a7f3ddSMatthew G. Knepley     if (label) *label = dm->fields[f].label;
5021bb7acecfSBarry Smith     if (disc) *disc = dm->fields[f].disc;
50224c4edb6fSBarry Smith   }
50233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5024decb47aaSMatthew G. Knepley }
5025decb47aaSMatthew G. Knepley 
5026083401c6SMatthew G. Knepley /* Does not clear the DS */
5027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5028d71ae5a4SJacob Faibussowitsch {
5029083401c6SMatthew G. Knepley   PetscFunctionBegin;
50309566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, f + 1));
50319566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->fields[f].label));
50329566063dSJacob Faibussowitsch   PetscCall(PetscObjectDestroy(&dm->fields[f].disc));
5033083401c6SMatthew G. Knepley   dm->fields[f].label = label;
5034bb7acecfSBarry Smith   dm->fields[f].disc  = disc;
50359566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5036835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
50373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5038083401c6SMatthew G. Knepley }
5039083401c6SMatthew G. Knepley 
5040ffeef943SBarry Smith /*@
5041bb7acecfSBarry Smith   DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles
5042bb7acecfSBarry Smith   the field numbering.
5043c1929be8SMatthew G. Knepley 
504420f4b53cSBarry Smith   Logically Collective
5045c1929be8SMatthew G. Knepley 
5046c1929be8SMatthew G. Knepley   Input Parameters:
5047bb7acecfSBarry Smith + dm    - The `DM`
5048c1929be8SMatthew G. Knepley . f     - The field number
504920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5050bb7acecfSBarry Smith - disc  - The discretization object
5051c1929be8SMatthew G. Knepley 
505244a7f3ddSMatthew G. Knepley   Level: intermediate
5053c1929be8SMatthew G. Knepley 
50541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`
5055c1929be8SMatthew G. Knepley @*/
5056d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc)
5057d71ae5a4SJacob Faibussowitsch {
5058decb47aaSMatthew G. Knepley   PetscFunctionBegin;
5059decb47aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5060e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
5061bb7acecfSBarry Smith   PetscValidHeader(disc, 4);
50627a8be351SBarry Smith   PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f);
5063bb7acecfSBarry Smith   PetscCall(DMSetField_Internal(dm, f, label, disc));
5064bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc));
50659566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
50663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
506744a7f3ddSMatthew G. Knepley }
506844a7f3ddSMatthew G. Knepley 
5069ffeef943SBarry Smith /*@
5070bb7acecfSBarry Smith   DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities)
5071bb7acecfSBarry Smith   and a discretization object that defines the function space associated with those points.
507244a7f3ddSMatthew G. Knepley 
507320f4b53cSBarry Smith   Logically Collective
507444a7f3ddSMatthew G. Knepley 
507544a7f3ddSMatthew G. Knepley   Input Parameters:
5076bb7acecfSBarry Smith + dm    - The `DM`
507720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh
5078bb7acecfSBarry Smith - disc  - The discretization object
507944a7f3ddSMatthew G. Knepley 
508044a7f3ddSMatthew G. Knepley   Level: intermediate
508144a7f3ddSMatthew G. Knepley 
5082bb7acecfSBarry Smith   Notes:
5083bb7acecfSBarry Smith   The label already exists or will be added to the `DM` with `DMSetLabel()`.
5084bb7acecfSBarry Smith 
5085da81f932SPierre Jolivet   For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions
5086bb7acecfSBarry Smith   within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the
5087bb7acecfSBarry Smith   geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`.
5088bb7acecfSBarry Smith 
5089ce78bad3SBarry Smith   Fortran Note:
5090ce78bad3SBarry Smith   Use the argument `PetscObjectCast(disc)` as the second argument
5091ce78bad3SBarry Smith 
50921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE`
509344a7f3ddSMatthew G. Knepley @*/
5094d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc)
5095d71ae5a4SJacob Faibussowitsch {
509644a7f3ddSMatthew G. Knepley   PetscInt Nf = dm->Nf;
509744a7f3ddSMatthew G. Knepley 
509844a7f3ddSMatthew G. Knepley   PetscFunctionBegin;
509944a7f3ddSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5100064a246eSJacob Faibussowitsch   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
5101bb7acecfSBarry Smith   PetscValidHeader(disc, 3);
51029566063dSJacob Faibussowitsch   PetscCall(DMFieldEnlarge_Static(dm, Nf + 1));
510344a7f3ddSMatthew G. Knepley   dm->fields[Nf].label = label;
5104bb7acecfSBarry Smith   dm->fields[Nf].disc  = disc;
51059566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
5106835f2295SStefano Zampini   PetscCall(PetscObjectReference(disc));
5107bb7acecfSBarry Smith   PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc));
51089566063dSJacob Faibussowitsch   PetscCall(DMClearDS(dm));
51093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5110af122d2aSMatthew G Knepley }
51116636e97aSMatthew G Knepley 
5112e5e52638SMatthew G. Knepley /*@
5113e0b68406SMatthew Knepley   DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells
5114e0b68406SMatthew Knepley 
511520f4b53cSBarry Smith   Logically Collective
5116e0b68406SMatthew Knepley 
5117e0b68406SMatthew Knepley   Input Parameters:
5118bb7acecfSBarry Smith + dm          - The `DM`
5119e0b68406SMatthew Knepley . f           - The field index
5120bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells
5121e0b68406SMatthew Knepley 
5122e0b68406SMatthew Knepley   Level: intermediate
5123e0b68406SMatthew Knepley 
51241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()`
5125e0b68406SMatthew Knepley @*/
5126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor)
5127d71ae5a4SJacob Faibussowitsch {
5128e0b68406SMatthew Knepley   PetscFunctionBegin;
512963a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5130e0b68406SMatthew Knepley   dm->fields[f].avoidTensor = avoidTensor;
51313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5132e0b68406SMatthew Knepley }
5133e0b68406SMatthew Knepley 
5134e0b68406SMatthew Knepley /*@
5135e0b68406SMatthew Knepley   DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells
5136e0b68406SMatthew Knepley 
513720f4b53cSBarry Smith   Not Collective
5138e0b68406SMatthew Knepley 
5139e0b68406SMatthew Knepley   Input Parameters:
5140bb7acecfSBarry Smith + dm - The `DM`
5141e0b68406SMatthew Knepley - f  - The field index
5142e0b68406SMatthew Knepley 
5143e0b68406SMatthew Knepley   Output Parameter:
5144e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells
5145e0b68406SMatthew Knepley 
5146e0b68406SMatthew Knepley   Level: intermediate
5147e0b68406SMatthew Knepley 
514860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()`
5149e0b68406SMatthew Knepley @*/
5150d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor)
5151d71ae5a4SJacob Faibussowitsch {
5152e0b68406SMatthew Knepley   PetscFunctionBegin;
515363a3b9bcSJacob Faibussowitsch   PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf);
5154e0b68406SMatthew Knepley   *avoidTensor = dm->fields[f].avoidTensor;
51553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5156e0b68406SMatthew Knepley }
5157e0b68406SMatthew Knepley 
5158e0b68406SMatthew Knepley /*@
5159bb7acecfSBarry Smith   DMCopyFields - Copy the discretizations for the `DM` into another `DM`
5160e5e52638SMatthew G. Knepley 
516120f4b53cSBarry Smith   Collective
5162e5e52638SMatthew G. Knepley 
5163bb4b53efSMatthew G. Knepley   Input Parameters:
5164bb4b53efSMatthew G. Knepley + dm        - The `DM`
5165bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
5166bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
5167e5e52638SMatthew G. Knepley 
5168e5e52638SMatthew G. Knepley   Output Parameter:
5169bb7acecfSBarry Smith . newdm - The `DM`
5170e5e52638SMatthew G. Knepley 
5171e5e52638SMatthew G. Knepley   Level: advanced
5172e5e52638SMatthew G. Knepley 
51731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()`
5174e5e52638SMatthew G. Knepley @*/
5175bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
5176d71ae5a4SJacob Faibussowitsch {
5177e5e52638SMatthew G. Knepley   PetscInt Nf, f;
5178e5e52638SMatthew G. Knepley 
5179e5e52638SMatthew G. Knepley   PetscFunctionBegin;
51803ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
51819566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
51829566063dSJacob Faibussowitsch   PetscCall(DMClearFields(newdm));
5183e5e52638SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5184e5e52638SMatthew G. Knepley     DMLabel      label;
5185e5e52638SMatthew G. Knepley     PetscObject  field;
5186bb4b53efSMatthew G. Knepley     PetscClassId id;
518734aa8a36SMatthew G. Knepley     PetscBool    useCone, useClosure;
5188e5e52638SMatthew G. Knepley 
51899566063dSJacob Faibussowitsch     PetscCall(DMGetField(dm, f, &label, &field));
5190bb4b53efSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(field, &id));
5191bb4b53efSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
5192bb4b53efSMatthew G. Knepley       PetscFE newfe;
5193bb4b53efSMatthew G. Knepley 
5194bb4b53efSMatthew G. Knepley       PetscCall(PetscFELimitDegree((PetscFE)field, minDegree, maxDegree, &newfe));
5195bb4b53efSMatthew G. Knepley       PetscCall(DMSetField(newdm, f, label, (PetscObject)newfe));
5196bb4b53efSMatthew G. Knepley       PetscCall(PetscFEDestroy(&newfe));
5197bb4b53efSMatthew G. Knepley     } else {
51989566063dSJacob Faibussowitsch       PetscCall(DMSetField(newdm, f, label, field));
5199bb4b53efSMatthew G. Knepley     }
52009566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure));
52019566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure));
520234aa8a36SMatthew G. Knepley   }
5203*4758e3ceSMatthew G. Knepley   // Create nullspace constructor slots
5204*4758e3ceSMatthew G. Knepley   if (dm->nullspaceConstructors) {
5205*4758e3ceSMatthew G. Knepley     PetscCall(PetscFree2(newdm->nullspaceConstructors, newdm->nearnullspaceConstructors));
5206*4758e3ceSMatthew G. Knepley     PetscCall(PetscCalloc2(Nf, &newdm->nullspaceConstructors, Nf, &newdm->nearnullspaceConstructors));
5207*4758e3ceSMatthew G. Knepley   }
52083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
520934aa8a36SMatthew G. Knepley }
521034aa8a36SMatthew G. Knepley 
521134aa8a36SMatthew G. Knepley /*@
521234aa8a36SMatthew G. Knepley   DMGetAdjacency - Returns the flags for determining variable influence
521334aa8a36SMatthew G. Knepley 
521420f4b53cSBarry Smith   Not Collective
521534aa8a36SMatthew G. Knepley 
521634aa8a36SMatthew G. Knepley   Input Parameters:
521720f4b53cSBarry Smith + dm - The `DM` object
521820f4b53cSBarry Smith - f  - The field number, or `PETSC_DEFAULT` for the default adjacency
521934aa8a36SMatthew G. Knepley 
5220d8d19677SJose E. Roman   Output Parameters:
522134aa8a36SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
522234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
522334aa8a36SMatthew G. Knepley 
522434aa8a36SMatthew G. Knepley   Level: developer
522534aa8a36SMatthew G. Knepley 
522620f4b53cSBarry Smith   Notes:
522720f4b53cSBarry Smith .vb
522820f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
522920f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
523020f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
523120f4b53cSBarry Smith .ve
523220f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
523320f4b53cSBarry Smith 
52341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()`
523534aa8a36SMatthew G. Knepley @*/
5236d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure)
5237d71ae5a4SJacob Faibussowitsch {
523834aa8a36SMatthew G. Knepley   PetscFunctionBegin;
523934aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
52404f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 3);
52414f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 4);
524234aa8a36SMatthew G. Knepley   if (f < 0) {
524334aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->adjacency[0];
524434aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->adjacency[1];
524534aa8a36SMatthew G. Knepley   } else {
524634aa8a36SMatthew G. Knepley     PetscInt Nf;
524734aa8a36SMatthew G. Knepley 
52489566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52497a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
525034aa8a36SMatthew G. Knepley     if (useCone) *useCone = dm->fields[f].adjacency[0];
525134aa8a36SMatthew G. Knepley     if (useClosure) *useClosure = dm->fields[f].adjacency[1];
525234aa8a36SMatthew G. Knepley   }
52533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
525434aa8a36SMatthew G. Knepley }
525534aa8a36SMatthew G. Knepley 
525634aa8a36SMatthew G. Knepley /*@
525734aa8a36SMatthew G. Knepley   DMSetAdjacency - Set the flags for determining variable influence
525834aa8a36SMatthew G. Knepley 
525920f4b53cSBarry Smith   Not Collective
526034aa8a36SMatthew G. Knepley 
526134aa8a36SMatthew G. Knepley   Input Parameters:
526220f4b53cSBarry Smith + dm         - The `DM` object
526334aa8a36SMatthew G. Knepley . f          - The field number
526434aa8a36SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
526534aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
526634aa8a36SMatthew G. Knepley 
526734aa8a36SMatthew G. Knepley   Level: developer
526834aa8a36SMatthew G. Knepley 
526920f4b53cSBarry Smith   Notes:
527020f4b53cSBarry Smith .vb
527120f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
527220f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
527320f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
527420f4b53cSBarry Smith .ve
527520f4b53cSBarry Smith   Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another.
527620f4b53cSBarry Smith 
52771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()`
527834aa8a36SMatthew G. Knepley @*/
5279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure)
5280d71ae5a4SJacob Faibussowitsch {
528134aa8a36SMatthew G. Knepley   PetscFunctionBegin;
528234aa8a36SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
528334aa8a36SMatthew G. Knepley   if (f < 0) {
528434aa8a36SMatthew G. Knepley     dm->adjacency[0] = useCone;
528534aa8a36SMatthew G. Knepley     dm->adjacency[1] = useClosure;
528634aa8a36SMatthew G. Knepley   } else {
528734aa8a36SMatthew G. Knepley     PetscInt Nf;
528834aa8a36SMatthew G. Knepley 
52899566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
52907a8be351SBarry Smith     PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf);
529134aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[0] = useCone;
529234aa8a36SMatthew G. Knepley     dm->fields[f].adjacency[1] = useClosure;
5293e5e52638SMatthew G. Knepley   }
52943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5295e5e52638SMatthew G. Knepley }
5296e5e52638SMatthew G. Knepley 
5297b0441da4SMatthew G. Knepley /*@
5298b0441da4SMatthew G. Knepley   DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined
5299b0441da4SMatthew G. Knepley 
5300b0441da4SMatthew G. Knepley   Not collective
5301b0441da4SMatthew G. Knepley 
5302f899ff85SJose E. Roman   Input Parameter:
530320f4b53cSBarry Smith . dm - The `DM` object
5304b0441da4SMatthew G. Knepley 
5305d8d19677SJose E. Roman   Output Parameters:
5306b0441da4SMatthew G. Knepley + useCone    - Flag for variable influence starting with the cone operation
5307b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5308b0441da4SMatthew G. Knepley 
5309b0441da4SMatthew G. Knepley   Level: developer
5310b0441da4SMatthew G. Knepley 
531120f4b53cSBarry Smith   Notes:
531220f4b53cSBarry Smith .vb
531320f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
531420f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
531520f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
531620f4b53cSBarry Smith .ve
531720f4b53cSBarry Smith 
53181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5319b0441da4SMatthew G. Knepley @*/
5320d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure)
5321d71ae5a4SJacob Faibussowitsch {
5322b0441da4SMatthew G. Knepley   PetscInt Nf;
5323b0441da4SMatthew G. Knepley 
5324b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5325b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53264f572ea9SToby Isaac   if (useCone) PetscAssertPointer(useCone, 2);
53274f572ea9SToby Isaac   if (useClosure) PetscAssertPointer(useClosure, 3);
53289566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5329b0441da4SMatthew G. Knepley   if (!Nf) {
53309566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5331b0441da4SMatthew G. Knepley   } else {
53329566063dSJacob Faibussowitsch     PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure));
5333b0441da4SMatthew G. Knepley   }
53343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5335b0441da4SMatthew G. Knepley }
5336b0441da4SMatthew G. Knepley 
5337b0441da4SMatthew G. Knepley /*@
5338b0441da4SMatthew G. Knepley   DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined
5339b0441da4SMatthew G. Knepley 
534020f4b53cSBarry Smith   Not Collective
5341b0441da4SMatthew G. Knepley 
5342b0441da4SMatthew G. Knepley   Input Parameters:
534320f4b53cSBarry Smith + dm         - The `DM` object
5344b0441da4SMatthew G. Knepley . useCone    - Flag for variable influence starting with the cone operation
5345b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure
5346b0441da4SMatthew G. Knepley 
5347b0441da4SMatthew G. Knepley   Level: developer
5348b0441da4SMatthew G. Knepley 
534920f4b53cSBarry Smith   Notes:
535020f4b53cSBarry Smith .vb
535120f4b53cSBarry Smith      FEM:   Two points p and q are adjacent if q \in closure(star(p)),   useCone = PETSC_FALSE, useClosure = PETSC_TRUE
535220f4b53cSBarry Smith      FVM:   Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE,  useClosure = PETSC_FALSE
535320f4b53cSBarry Smith      FVM++: Two points p and q are adjacent if q \in star(closure(p)),   useCone = PETSC_TRUE,  useClosure = PETSC_TRUE
535420f4b53cSBarry Smith .ve
535520f4b53cSBarry Smith 
53561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()`
5357b0441da4SMatthew G. Knepley @*/
5358d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure)
5359d71ae5a4SJacob Faibussowitsch {
5360b0441da4SMatthew G. Knepley   PetscInt Nf;
5361b0441da4SMatthew G. Knepley 
5362b0441da4SMatthew G. Knepley   PetscFunctionBegin;
5363b0441da4SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
53649566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
5365b0441da4SMatthew G. Knepley   if (!Nf) {
53669566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure));
5367b0441da4SMatthew G. Knepley   } else {
53689566063dSJacob Faibussowitsch     PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure));
5369e5e52638SMatthew G. Knepley   }
53703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5371e5e52638SMatthew G. Knepley }
5372e5e52638SMatthew G. Knepley 
5373d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm)
5374d71ae5a4SJacob Faibussowitsch {
5375799db056SMatthew G. Knepley   DM           plex;
5376799db056SMatthew G. Knepley   DMLabel     *labels, *glabels;
5377799db056SMatthew G. Knepley   const char **names;
5378799db056SMatthew G. Knepley   char        *sendNames, *recvNames;
5379799db056SMatthew G. Knepley   PetscInt     Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m;
5380799db056SMatthew G. Knepley   size_t       len;
5381799db056SMatthew G. Knepley   MPI_Comm     comm;
5382799db056SMatthew G. Knepley   PetscMPIInt  rank, size, p, *counts, *displs;
5383783e2ec8SMatthew G. Knepley 
5384783e2ec8SMatthew G. Knepley   PetscFunctionBegin;
5385799db056SMatthew G. Knepley   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
5386799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_size(comm, &size));
5387799db056SMatthew G. Knepley   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5388799db056SMatthew G. Knepley   PetscCall(DMGetNumDS(dm, &Nds));
5389799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5390799db056SMatthew G. Knepley     PetscDS  dsBC;
5391799db056SMatthew G. Knepley     PetscInt numBd;
5392799db056SMatthew G. Knepley 
539307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5394799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5395799db056SMatthew G. Knepley     maxLabels += numBd;
5396799db056SMatthew G. Knepley   }
5397799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(maxLabels, &labels));
5398799db056SMatthew G. Knepley   /* Get list of labels to be completed */
5399799db056SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5400799db056SMatthew G. Knepley     PetscDS  dsBC;
5401799db056SMatthew G. Knepley     PetscInt numBd, bd;
5402799db056SMatthew G. Knepley 
540307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL));
5404799db056SMatthew G. Knepley     PetscCall(PetscDSGetNumBoundary(dsBC, &numBd));
5405799db056SMatthew G. Knepley     for (bd = 0; bd < numBd; ++bd) {
5406799db056SMatthew G. Knepley       DMLabel      label;
5407799db056SMatthew G. Knepley       PetscInt     field;
5408799db056SMatthew G. Knepley       PetscObject  obj;
5409799db056SMatthew G. Knepley       PetscClassId id;
5410799db056SMatthew G. Knepley 
5411799db056SMatthew G. Knepley       PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
54129566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, field, NULL, &obj));
54139566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(obj, &id));
5414fa74d514SMatthew G. Knepley       if (id != PETSCFE_CLASSID || !label) continue;
54159371c9d4SSatish Balay       for (l = 0; l < Nl; ++l)
54169371c9d4SSatish Balay         if (labels[l] == label) break;
5417799db056SMatthew G. Knepley       if (l == Nl) labels[Nl++] = label;
5418783e2ec8SMatthew G. Knepley     }
5419799db056SMatthew G. Knepley   }
5420799db056SMatthew G. Knepley   /* Get label names */
5421799db056SMatthew G. Knepley   PetscCall(PetscMalloc1(Nl, &names));
5422799db056SMatthew G. Knepley   for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l]));
54239371c9d4SSatish Balay   for (l = 0; l < Nl; ++l) {
54249371c9d4SSatish Balay     PetscCall(PetscStrlen(names[l], &len));
54259371c9d4SSatish Balay     maxLen = PetscMax(maxLen, (PetscInt)len + 2);
54269371c9d4SSatish Balay   }
5427799db056SMatthew G. Knepley   PetscCall(PetscFree(labels));
5428462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm));
5429799db056SMatthew G. Knepley   PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames));
5430c6a7a370SJeremy L Thompson   for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen));
5431799db056SMatthew G. Knepley   PetscCall(PetscFree(names));
5432799db056SMatthew G. Knepley   /* Put all names on all processes */
5433799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(size, &counts, size + 1, &displs));
5434799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm));
5435799db056SMatthew G. Knepley   for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p];
5436799db056SMatthew G. Knepley   gNl = displs[size];
54379371c9d4SSatish Balay   for (p = 0; p < size; ++p) {
54389371c9d4SSatish Balay     counts[p] *= gmaxLen;
54399371c9d4SSatish Balay     displs[p] *= gmaxLen;
54409371c9d4SSatish Balay   }
5441799db056SMatthew G. Knepley   PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels));
5442799db056SMatthew G. Knepley   PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm));
5443799db056SMatthew G. Knepley   PetscCall(PetscFree2(counts, displs));
5444799db056SMatthew G. Knepley   PetscCall(PetscFree(sendNames));
5445799db056SMatthew G. Knepley   for (l = 0, gl = 0; l < gNl; ++l) {
5446799db056SMatthew G. Knepley     PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl]));
5447799db056SMatthew G. Knepley     PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank);
54489371c9d4SSatish Balay     for (m = 0; m < gl; ++m)
54495d6b2bfcSJames Wright       if (glabels[m] == glabels[gl]) goto next_label;
54509566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
5451799db056SMatthew G. Knepley     PetscCall(DMPlexLabelComplete(plex, glabels[gl]));
54529566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
5453799db056SMatthew G. Knepley     ++gl;
54545d6b2bfcSJames Wright   next_label:
54555d6b2bfcSJames Wright     continue;
5456783e2ec8SMatthew G. Knepley   }
5457799db056SMatthew G. Knepley   PetscCall(PetscFree2(recvNames, glabels));
54583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5459783e2ec8SMatthew G. Knepley }
5460783e2ec8SMatthew G. Knepley 
5461d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew)
5462d71ae5a4SJacob Faibussowitsch {
5463e5e52638SMatthew G. Knepley   DMSpace *tmpd;
5464e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5465e5e52638SMatthew G. Knepley 
5466e5e52638SMatthew G. Knepley   PetscFunctionBegin;
54673ba16761SJacob Faibussowitsch   if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS);
54689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(NdsNew, &tmpd));
5469e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s];
54709371c9d4SSatish Balay   for (s = Nds; s < NdsNew; ++s) {
54719371c9d4SSatish Balay     tmpd[s].ds     = NULL;
54729371c9d4SSatish Balay     tmpd[s].label  = NULL;
54739371c9d4SSatish Balay     tmpd[s].fields = NULL;
54749371c9d4SSatish Balay   }
54759566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5476e5e52638SMatthew G. Knepley   dm->Nds   = NdsNew;
5477e5e52638SMatthew G. Knepley   dm->probs = tmpd;
54783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5479e5e52638SMatthew G. Knepley }
5480e5e52638SMatthew G. Knepley 
5481e5e52638SMatthew G. Knepley /*@
548220f4b53cSBarry Smith   DMGetNumDS - Get the number of discrete systems in the `DM`
5483e5e52638SMatthew G. Knepley 
548420f4b53cSBarry Smith   Not Collective
5485e5e52638SMatthew G. Knepley 
5486e5e52638SMatthew G. Knepley   Input Parameter:
548720f4b53cSBarry Smith . dm - The `DM`
5488e5e52638SMatthew G. Knepley 
5489e5e52638SMatthew G. Knepley   Output Parameter:
549020f4b53cSBarry Smith . Nds - The number of `PetscDS` objects
5491e5e52638SMatthew G. Knepley 
5492e5e52638SMatthew G. Knepley   Level: intermediate
5493e5e52638SMatthew G. Knepley 
54941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()`
5495e5e52638SMatthew G. Knepley @*/
5496d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds)
5497d71ae5a4SJacob Faibussowitsch {
5498e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5499e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55004f572ea9SToby Isaac   PetscAssertPointer(Nds, 2);
5501e5e52638SMatthew G. Knepley   *Nds = dm->Nds;
55023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5503e5e52638SMatthew G. Knepley }
5504e5e52638SMatthew G. Knepley 
5505e5e52638SMatthew G. Knepley /*@
550620f4b53cSBarry Smith   DMClearDS - Remove all discrete systems from the `DM`
5507e5e52638SMatthew G. Knepley 
550820f4b53cSBarry Smith   Logically Collective
5509e5e52638SMatthew G. Knepley 
5510e5e52638SMatthew G. Knepley   Input Parameter:
551120f4b53cSBarry Smith . dm - The `DM`
5512e5e52638SMatthew G. Knepley 
5513e5e52638SMatthew G. Knepley   Level: intermediate
5514e5e52638SMatthew G. Knepley 
55151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()`
5516e5e52638SMatthew G. Knepley @*/
5517d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm)
5518d71ae5a4SJacob Faibussowitsch {
5519e5e52638SMatthew G. Knepley   PetscInt s;
5520e5e52638SMatthew G. Knepley 
5521e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5522e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5523e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
55249566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[s].ds));
552507218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
55269566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&dm->probs[s].label));
55279566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[s].fields));
5528e5e52638SMatthew G. Knepley   }
55299566063dSJacob Faibussowitsch   PetscCall(PetscFree(dm->probs));
5530e5e52638SMatthew G. Knepley   dm->probs = NULL;
5531e5e52638SMatthew G. Knepley   dm->Nds   = 0;
55323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5533e5e52638SMatthew G. Knepley }
5534e5e52638SMatthew G. Knepley 
5535e5e52638SMatthew G. Knepley /*@
553620f4b53cSBarry Smith   DMGetDS - Get the default `PetscDS`
5537e5e52638SMatthew G. Knepley 
553820f4b53cSBarry Smith   Not Collective
5539e5e52638SMatthew G. Knepley 
5540e5e52638SMatthew G. Knepley   Input Parameter:
554120f4b53cSBarry Smith . dm - The `DM`
5542e5e52638SMatthew G. Knepley 
5543e5e52638SMatthew G. Knepley   Output Parameter:
554407218a29SMatthew G. Knepley . ds - The default `PetscDS`
5545e5e52638SMatthew G. Knepley 
5546e5e52638SMatthew G. Knepley   Level: intermediate
5547e5e52638SMatthew G. Knepley 
5548ce78bad3SBarry Smith   Note:
5549ce78bad3SBarry Smith   The `ds` is owned by the `dm` and should not be destroyed directly.
5550ce78bad3SBarry Smith 
55511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()`
5552e5e52638SMatthew G. Knepley @*/
555307218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds)
5554d71ae5a4SJacob Faibussowitsch {
5555e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5556e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55574f572ea9SToby Isaac   PetscAssertPointer(ds, 2);
555807218a29SMatthew G. Knepley   PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()");
555907218a29SMatthew G. Knepley   *ds = dm->probs[0].ds;
55603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5561e5e52638SMatthew G. Knepley }
5562e5e52638SMatthew G. Knepley 
5563e5e52638SMatthew G. Knepley /*@
556420f4b53cSBarry Smith   DMGetCellDS - Get the `PetscDS` defined on a given cell
5565e5e52638SMatthew G. Knepley 
556620f4b53cSBarry Smith   Not Collective
5567e5e52638SMatthew G. Knepley 
5568e5e52638SMatthew G. Knepley   Input Parameters:
556920f4b53cSBarry Smith + dm    - The `DM`
557020f4b53cSBarry Smith - point - Cell for the `PetscDS`
5571e5e52638SMatthew G. Knepley 
557207218a29SMatthew G. Knepley   Output Parameters:
557307218a29SMatthew G. Knepley + ds   - The `PetscDS` defined on the given cell
557407218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds
5575e5e52638SMatthew G. Knepley 
5576e5e52638SMatthew G. Knepley   Level: developer
5577e5e52638SMatthew G. Knepley 
55781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()`
5579e5e52638SMatthew G. Knepley @*/
558007218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn)
5581d71ae5a4SJacob Faibussowitsch {
558207218a29SMatthew G. Knepley   PetscDS  dsDef = NULL;
5583e5e52638SMatthew G. Knepley   PetscInt s;
5584e5e52638SMatthew G. Knepley 
5585e5e52638SMatthew G. Knepley   PetscFunctionBeginHot;
5586e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
55874f572ea9SToby Isaac   if (ds) PetscAssertPointer(ds, 3);
55884f572ea9SToby Isaac   if (dsIn) PetscAssertPointer(dsIn, 4);
558963a3b9bcSJacob Faibussowitsch   PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point);
559007218a29SMatthew G. Knepley   if (ds) *ds = NULL;
559107218a29SMatthew G. Knepley   if (dsIn) *dsIn = NULL;
5592e5e52638SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
5593e5e52638SMatthew G. Knepley     PetscInt val;
5594e5e52638SMatthew G. Knepley 
55959371c9d4SSatish Balay     if (!dm->probs[s].label) {
559607218a29SMatthew G. Knepley       dsDef = dm->probs[s].ds;
55979371c9d4SSatish Balay     } else {
55989566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val));
55999371c9d4SSatish Balay       if (val >= 0) {
560007218a29SMatthew G. Knepley         if (ds) *ds = dm->probs[s].ds;
560107218a29SMatthew G. Knepley         if (dsIn) *dsIn = dm->probs[s].dsIn;
56029371c9d4SSatish Balay         break;
56039371c9d4SSatish Balay       }
5604e5e52638SMatthew G. Knepley     }
5605e5e52638SMatthew G. Knepley   }
560607218a29SMatthew G. Knepley   if (ds && !*ds) *ds = dsDef;
56073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5608e5e52638SMatthew G. Knepley }
5609e5e52638SMatthew G. Knepley 
5610e5e52638SMatthew G. Knepley /*@
561120f4b53cSBarry Smith   DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel`
5612e5e52638SMatthew G. Knepley 
561320f4b53cSBarry Smith   Not Collective
5614e5e52638SMatthew G. Knepley 
5615e5e52638SMatthew G. Knepley   Input Parameters:
561620f4b53cSBarry Smith + dm    - The `DM`
561720f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
5618e5e52638SMatthew G. Knepley 
5619b3cf3223SMatthew G. Knepley   Output Parameters:
562020f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
562107218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
562207218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5623e5e52638SMatthew G. Knepley 
5624e5e52638SMatthew G. Knepley   Level: advanced
5625e5e52638SMatthew G. Knepley 
562620f4b53cSBarry Smith   Note:
562720f4b53cSBarry Smith   If a non-`NULL` label is given, but there is no `PetscDS` on that specific label,
562820f4b53cSBarry Smith   the `PetscDS` for the full domain (if present) is returned. Returns with
562907218a29SMatthew G. Knepley   fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain.
563020f4b53cSBarry Smith 
56311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5632e5e52638SMatthew G. Knepley @*/
563307218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5634d71ae5a4SJacob Faibussowitsch {
5635e5e52638SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5636e5e52638SMatthew G. Knepley 
5637e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5638e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5639e5e52638SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
56409371c9d4SSatish Balay   if (fields) {
56414f572ea9SToby Isaac     PetscAssertPointer(fields, 3);
56429371c9d4SSatish Balay     *fields = NULL;
56439371c9d4SSatish Balay   }
56449371c9d4SSatish Balay   if (ds) {
56454f572ea9SToby Isaac     PetscAssertPointer(ds, 4);
56469371c9d4SSatish Balay     *ds = NULL;
56479371c9d4SSatish Balay   }
564807218a29SMatthew G. Knepley   if (dsIn) {
56494f572ea9SToby Isaac     PetscAssertPointer(dsIn, 5);
565007218a29SMatthew G. Knepley     *dsIn = NULL;
565107218a29SMatthew G. Knepley   }
5652e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5653154ca461SJed Brown     if (dm->probs[s].label == label || !dm->probs[s].label) {
5654b3cf3223SMatthew G. Knepley       if (fields) *fields = dm->probs[s].fields;
5655b3cf3223SMatthew G. Knepley       if (ds) *ds = dm->probs[s].ds;
565607218a29SMatthew G. Knepley       if (dsIn) *dsIn = dm->probs[s].dsIn;
56573ba16761SJacob Faibussowitsch       if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS);
5658b3cf3223SMatthew G. Knepley     }
5659e5e52638SMatthew G. Knepley   }
56603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5661e5e52638SMatthew G. Knepley }
5662e5e52638SMatthew G. Knepley 
5663e5e52638SMatthew G. Knepley /*@
5664bb7acecfSBarry Smith   DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel`
5665083401c6SMatthew G. Knepley 
566620f4b53cSBarry Smith   Collective
5667083401c6SMatthew G. Knepley 
5668083401c6SMatthew G. Knepley   Input Parameters:
5669bb7acecfSBarry Smith + dm     - The `DM`
567020f4b53cSBarry Smith . label  - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh
567107218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields
567207218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region
567307218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5674083401c6SMatthew G. Knepley 
567520f4b53cSBarry Smith   Level: advanced
567620f4b53cSBarry Smith 
5677bb7acecfSBarry Smith   Note:
5678bb7acecfSBarry Smith   If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced,
5679083401c6SMatthew G. Knepley   the fields argument is ignored.
5680083401c6SMatthew G. Knepley 
56811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()`
5682083401c6SMatthew G. Knepley @*/
568307218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5684d71ae5a4SJacob Faibussowitsch {
5685083401c6SMatthew G. Knepley   PetscInt Nds = dm->Nds, s;
5686083401c6SMatthew G. Knepley 
5687083401c6SMatthew G. Knepley   PetscFunctionBegin;
5688083401c6SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5689083401c6SMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
569007218a29SMatthew G. Knepley   if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3);
5691064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4);
569207218a29SMatthew G. Knepley   if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5);
5693083401c6SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
5694083401c6SMatthew G. Knepley     if (dm->probs[s].label == label) {
56959566063dSJacob Faibussowitsch       PetscCall(PetscDSDestroy(&dm->probs[s].ds));
569607218a29SMatthew G. Knepley       PetscCall(PetscDSDestroy(&dm->probs[s].dsIn));
5697083401c6SMatthew G. Knepley       dm->probs[s].ds   = ds;
569807218a29SMatthew G. Knepley       dm->probs[s].dsIn = dsIn;
56993ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
5700083401c6SMatthew G. Knepley     }
5701083401c6SMatthew G. Knepley   }
57029566063dSJacob Faibussowitsch   PetscCall(DMDSEnlarge_Static(dm, Nds + 1));
57039566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57049566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fields));
57059566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)ds));
570607218a29SMatthew G. Knepley   PetscCall(PetscObjectReference((PetscObject)dsIn));
5707083401c6SMatthew G. Knepley   if (!label) {
5708083401c6SMatthew G. Knepley     /* Put the NULL label at the front, so it is returned as the default */
5709083401c6SMatthew G. Knepley     for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s];
5710083401c6SMatthew G. Knepley     Nds = 0;
5711083401c6SMatthew G. Knepley   }
5712083401c6SMatthew G. Knepley   dm->probs[Nds].label  = label;
5713083401c6SMatthew G. Knepley   dm->probs[Nds].fields = fields;
5714083401c6SMatthew G. Knepley   dm->probs[Nds].ds     = ds;
571507218a29SMatthew G. Knepley   dm->probs[Nds].dsIn   = dsIn;
57163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5717083401c6SMatthew G. Knepley }
5718083401c6SMatthew G. Knepley 
5719083401c6SMatthew G. Knepley /*@
572020f4b53cSBarry Smith   DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number
5721e5e52638SMatthew G. Knepley 
572220f4b53cSBarry Smith   Not Collective
5723e5e52638SMatthew G. Knepley 
5724e5e52638SMatthew G. Knepley   Input Parameters:
572520f4b53cSBarry Smith + dm  - The `DM`
5726e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds)
5727e5e52638SMatthew G. Knepley 
5728e5e52638SMatthew G. Knepley   Output Parameters:
572920f4b53cSBarry Smith + label  - The region label, or `NULL`
573020f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL`
573107218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL`
573207218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input in the given region, or `NULL`
5733e5e52638SMatthew G. Knepley 
5734e5e52638SMatthew G. Knepley   Level: advanced
5735e5e52638SMatthew G. Knepley 
57361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5737e5e52638SMatthew G. Knepley @*/
573807218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn)
5739d71ae5a4SJacob Faibussowitsch {
5740e5e52638SMatthew G. Knepley   PetscInt Nds;
5741e5e52638SMatthew G. Knepley 
5742e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5743e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
57449566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
574563a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
5746e5e52638SMatthew G. Knepley   if (label) {
57474f572ea9SToby Isaac     PetscAssertPointer(label, 3);
5748e5e52638SMatthew G. Knepley     *label = dm->probs[num].label;
5749e5e52638SMatthew G. Knepley   }
5750b3cf3223SMatthew G. Knepley   if (fields) {
57514f572ea9SToby Isaac     PetscAssertPointer(fields, 4);
5752b3cf3223SMatthew G. Knepley     *fields = dm->probs[num].fields;
5753b3cf3223SMatthew G. Knepley   }
5754e5e52638SMatthew G. Knepley   if (ds) {
57554f572ea9SToby Isaac     PetscAssertPointer(ds, 5);
5756e5e52638SMatthew G. Knepley     *ds = dm->probs[num].ds;
5757e5e52638SMatthew G. Knepley   }
575807218a29SMatthew G. Knepley   if (dsIn) {
57594f572ea9SToby Isaac     PetscAssertPointer(dsIn, 6);
576007218a29SMatthew G. Knepley     *dsIn = dm->probs[num].dsIn;
576107218a29SMatthew G. Knepley   }
57623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5763e5e52638SMatthew G. Knepley }
5764e5e52638SMatthew G. Knepley 
5765e5e52638SMatthew G. Knepley /*@
576620f4b53cSBarry Smith   DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number
5767e5e52638SMatthew G. Knepley 
576820f4b53cSBarry Smith   Not Collective
5769e5e52638SMatthew G. Knepley 
5770e5e52638SMatthew G. Knepley   Input Parameters:
577120f4b53cSBarry Smith + dm     - The `DM`
5772083401c6SMatthew G. Knepley . num    - The region number, in [0, Nds)
577320f4b53cSBarry Smith . label  - The region label, or `NULL`
577407218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting
577507218a29SMatthew G. Knepley . ds     - The `PetscDS` defined on the given region, or `NULL` to prevent setting
577607218a29SMatthew G. Knepley - dsIn   - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS`
5777e5e52638SMatthew G. Knepley 
5778e5e52638SMatthew G. Knepley   Level: advanced
5779e5e52638SMatthew G. Knepley 
57801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
5781e5e52638SMatthew G. Knepley @*/
578207218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn)
5783d71ae5a4SJacob Faibussowitsch {
5784083401c6SMatthew G. Knepley   PetscInt Nds;
5785e5e52638SMatthew G. Knepley 
5786e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5787e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
5788ad540459SPierre Jolivet   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);
57899566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
579063a3b9bcSJacob Faibussowitsch   PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds);
57919566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
57929566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&dm->probs[num].label));
5793083401c6SMatthew G. Knepley   dm->probs[num].label = label;
5794083401c6SMatthew G. Knepley   if (fields) {
5795083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(fields, IS_CLASSID, 4);
57969566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)fields));
57979566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dm->probs[num].fields));
5798083401c6SMatthew G. Knepley     dm->probs[num].fields = fields;
5799e5e52638SMatthew G. Knepley   }
5800083401c6SMatthew G. Knepley   if (ds) {
5801083401c6SMatthew G. Knepley     PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5);
58029566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)ds));
58039566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dm->probs[num].ds));
5804083401c6SMatthew G. Knepley     dm->probs[num].ds = ds;
5805083401c6SMatthew G. Knepley   }
580607218a29SMatthew G. Knepley   if (dsIn) {
580707218a29SMatthew G. Knepley     PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6);
580807218a29SMatthew G. Knepley     PetscCall(PetscObjectReference((PetscObject)dsIn));
580907218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dm->probs[num].dsIn));
581007218a29SMatthew G. Knepley     dm->probs[num].dsIn = dsIn;
581107218a29SMatthew G. Knepley   }
58123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5813e5e52638SMatthew G. Knepley }
5814e5e52638SMatthew G. Knepley 
5815e5e52638SMatthew G. Knepley /*@
581620f4b53cSBarry Smith   DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found.
58171d3af9e0SMatthew G. Knepley 
581820f4b53cSBarry Smith   Not Collective
58191d3af9e0SMatthew G. Knepley 
58201d3af9e0SMatthew G. Knepley   Input Parameters:
582120f4b53cSBarry Smith + dm - The `DM`
582220f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region
58231d3af9e0SMatthew G. Knepley 
58241d3af9e0SMatthew G. Knepley   Output Parameter:
58251d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found
58261d3af9e0SMatthew G. Knepley 
58271d3af9e0SMatthew G. Knepley   Level: advanced
58281d3af9e0SMatthew G. Knepley 
58291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()`
58301d3af9e0SMatthew G. Knepley @*/
5831d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num)
5832d71ae5a4SJacob Faibussowitsch {
58331d3af9e0SMatthew G. Knepley   PetscInt Nds, n;
58341d3af9e0SMatthew G. Knepley 
58351d3af9e0SMatthew G. Knepley   PetscFunctionBegin;
58361d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58371d3af9e0SMatthew G. Knepley   PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2);
58384f572ea9SToby Isaac   PetscAssertPointer(num, 3);
58399566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
58409371c9d4SSatish Balay   for (n = 0; n < Nds; ++n)
58419371c9d4SSatish Balay     if (ds == dm->probs[n].ds) break;
58421d3af9e0SMatthew G. Knepley   if (n >= Nds) *num = -1;
58431d3af9e0SMatthew G. Knepley   else *num = n;
58443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58451d3af9e0SMatthew G. Knepley }
58461d3af9e0SMatthew G. Knepley 
5847cc4c1da9SBarry Smith /*@
5848bb7acecfSBarry Smith   DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh
58492df84da0SMatthew G. Knepley 
585020f4b53cSBarry Smith   Not Collective
58512df84da0SMatthew G. Knepley 
5852f1a722f8SMatthew G. Knepley   Input Parameters:
5853bb7acecfSBarry Smith + dm     - The `DM`
58542df84da0SMatthew G. Knepley . Nc     - The number of components for the field
585520f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL`
5856bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree
58572df84da0SMatthew G. Knepley 
58582df84da0SMatthew G. Knepley   Output Parameter:
5859bb7acecfSBarry Smith . fem - The `PetscFE`
58602df84da0SMatthew G. Knepley 
586120f4b53cSBarry Smith   Level: intermediate
586220f4b53cSBarry Smith 
5863bb7acecfSBarry Smith   Note:
5864bb7acecfSBarry Smith   This is a convenience method that just calls `PetscFECreateByCell()` underneath.
58652df84da0SMatthew G. Knepley 
58661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()`
58672df84da0SMatthew G. Knepley @*/
5868d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem)
5869d71ae5a4SJacob Faibussowitsch {
58702df84da0SMatthew G. Knepley   DMPolytopeType ct;
58712df84da0SMatthew G. Knepley   PetscInt       dim, cStart;
58722df84da0SMatthew G. Knepley 
58732df84da0SMatthew G. Knepley   PetscFunctionBegin;
58742df84da0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
58752df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 2);
58764f572ea9SToby Isaac   if (prefix) PetscAssertPointer(prefix, 3);
58772df84da0SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, qorder, 4);
58784f572ea9SToby Isaac   PetscAssertPointer(fem, 5);
58799566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &dim));
58809566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
58819566063dSJacob Faibussowitsch   PetscCall(DMPlexGetCellType(dm, cStart, &ct));
58829566063dSJacob Faibussowitsch   PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem));
58833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58842df84da0SMatthew G. Knepley }
58852df84da0SMatthew G. Knepley 
58861d3af9e0SMatthew G. Knepley /*@
5887bb7acecfSBarry Smith   DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM`
5888e5e52638SMatthew G. Knepley 
588920f4b53cSBarry Smith   Collective
5890e5e52638SMatthew G. Knepley 
5891e5e52638SMatthew G. Knepley   Input Parameter:
5892bb7acecfSBarry Smith . dm - The `DM`
5893e5e52638SMatthew G. Knepley 
589420f4b53cSBarry Smith   Options Database Key:
5895bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM`
589645480ffeSMatthew G. Knepley 
589720f4b53cSBarry Smith   Level: intermediate
589820f4b53cSBarry Smith 
5899ce78bad3SBarry Smith   Developer Note:
5900ce78bad3SBarry Smith   The name of this function is wrong. Create functions always return the created object as one of the arguments.
5901ce78bad3SBarry Smith 
59021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
5903e5e52638SMatthew G. Knepley @*/
5904d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm)
5905d71ae5a4SJacob Faibussowitsch {
5906e5e52638SMatthew G. Knepley   MPI_Comm  comm;
5907083401c6SMatthew G. Knepley   PetscDS   dsDef;
5908083401c6SMatthew G. Knepley   DMLabel  *labelSet;
5909f9244615SMatthew G. Knepley   PetscInt  dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k;
5910f9244615SMatthew G. Knepley   PetscBool doSetup = PETSC_TRUE, flg;
5911e5e52638SMatthew G. Knepley 
5912e5e52638SMatthew G. Knepley   PetscFunctionBegin;
5913e5e52638SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
59143ba16761SJacob Faibussowitsch   if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS);
59159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm, &comm));
59169566063dSJacob Faibussowitsch   PetscCall(DMGetCoordinateDim(dm, &dE));
5917*4758e3ceSMatthew G. Knepley   // Create nullspace constructor slots
5918*4758e3ceSMatthew G. Knepley   PetscCall(PetscFree2(dm->nullspaceConstructors, dm->nearnullspaceConstructors));
5919*4758e3ceSMatthew G. Knepley   PetscCall(PetscCalloc2(Nf, &dm->nullspaceConstructors, Nf, &dm->nearnullspaceConstructors));
5920083401c6SMatthew G. Knepley   /* Determine how many regions we have */
59219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nf, &labelSet));
5922083401c6SMatthew G. Knepley   Nl   = 0;
5923083401c6SMatthew G. Knepley   Ndef = 0;
5924083401c6SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
5925083401c6SMatthew G. Knepley     DMLabel  label = dm->fields[f].label;
5926083401c6SMatthew G. Knepley     PetscInt l;
5927083401c6SMatthew G. Knepley 
5928f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED
5929f918ec44SMatthew G. Knepley     /* Move CEED context to discretizations */
5930f918ec44SMatthew G. Knepley     {
5931f918ec44SMatthew G. Knepley       PetscClassId id;
5932f918ec44SMatthew G. Knepley 
59339566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id));
5934f918ec44SMatthew G. Knepley       if (id == PETSCFE_CLASSID) {
5935f918ec44SMatthew G. Knepley         Ceed ceed;
5936f918ec44SMatthew G. Knepley 
59379566063dSJacob Faibussowitsch         PetscCall(DMGetCeed(dm, &ceed));
59389566063dSJacob Faibussowitsch         PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed));
5939f918ec44SMatthew G. Knepley       }
5940f918ec44SMatthew G. Knepley     }
5941f918ec44SMatthew G. Knepley #endif
59429371c9d4SSatish Balay     if (!label) {
59439371c9d4SSatish Balay       ++Ndef;
59449371c9d4SSatish Balay       continue;
59459371c9d4SSatish Balay     }
59469371c9d4SSatish Balay     for (l = 0; l < Nl; ++l)
59479371c9d4SSatish Balay       if (label == labelSet[l]) break;
5948083401c6SMatthew G. Knepley     if (l < Nl) continue;
5949083401c6SMatthew G. Knepley     labelSet[Nl++] = label;
5950083401c6SMatthew G. Knepley   }
5951083401c6SMatthew G. Knepley   /* Create default DS if there are no labels to intersect with */
595207218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
5953083401c6SMatthew G. Knepley   if (!dsDef && Ndef && !Nl) {
5954b3cf3223SMatthew G. Knepley     IS        fields;
5955b3cf3223SMatthew G. Knepley     PetscInt *fld, nf;
5956b3cf3223SMatthew G. Knepley 
59579371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59589371c9d4SSatish Balay       if (!dm->fields[f].label) ++nf;
59597a8be351SBarry Smith     PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS");
59609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
59619371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
59629371c9d4SSatish Balay       if (!dm->fields[f].label) fld[nf++] = f;
59639566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
59649566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
59659566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
59669566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
596788f0c812SMatthew G. Knepley 
59689566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
596907218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL));
59709566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
59719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fields));
59722df9ee95SMatthew G. Knepley   }
597307218a29SMatthew G. Knepley   PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL));
59749566063dSJacob Faibussowitsch   if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
5975083401c6SMatthew G. Knepley   /* Intersect labels with default fields */
5976083401c6SMatthew G. Knepley   if (Ndef && Nl) {
59770122748bSMatthew G. Knepley     DM              plex;
5978083401c6SMatthew G. Knepley     DMLabel         cellLabel;
5979083401c6SMatthew G. Knepley     IS              fieldIS, allcellIS, defcellIS = NULL;
5980083401c6SMatthew G. Knepley     PetscInt       *fields;
5981083401c6SMatthew G. Knepley     const PetscInt *cells;
5982083401c6SMatthew G. Knepley     PetscInt        depth, nf = 0, n, c;
59830122748bSMatthew G. Knepley 
59849566063dSJacob Faibussowitsch     PetscCall(DMConvert(dm, DMPLEX, &plex));
59859566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepth(plex, &depth));
59869566063dSJacob Faibussowitsch     PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS));
59879566063dSJacob Faibussowitsch     if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS));
59885fedec97SMatthew G. Knepley     /* TODO This looks like it only works for one label */
5989083401c6SMatthew G. Knepley     for (l = 0; l < Nl; ++l) {
5990083401c6SMatthew G. Knepley       DMLabel label = labelSet[l];
5991083401c6SMatthew G. Knepley       IS      pointIS;
5992083401c6SMatthew G. Knepley 
59939566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&defcellIS));
59949566063dSJacob Faibussowitsch       PetscCall(DMLabelGetStratumIS(label, 1, &pointIS));
59959566063dSJacob Faibussowitsch       PetscCall(ISDifference(allcellIS, pointIS, &defcellIS));
59969566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&pointIS));
5997083401c6SMatthew G. Knepley     }
59989566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&allcellIS));
5999083401c6SMatthew G. Knepley 
60009566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel));
60019566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(defcellIS, &n));
60029566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(defcellIS, &cells));
60039566063dSJacob Faibussowitsch     for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1));
60049566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(defcellIS, &cells));
60059566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&defcellIS));
60069566063dSJacob Faibussowitsch     PetscCall(DMPlexLabelComplete(plex, cellLabel));
6007083401c6SMatthew G. Knepley 
60089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Ndef, &fields));
60099371c9d4SSatish Balay     for (f = 0; f < Nf; ++f)
60109371c9d4SSatish Balay       if (!dm->fields[f].label) fields[nf++] = f;
60119566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS));
60129566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_"));
60139566063dSJacob Faibussowitsch     PetscCall(ISSetType(fieldIS, ISGENERAL));
60149566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER));
6015083401c6SMatthew G. Knepley 
60169566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef));
601707218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL));
60189566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(dsDef, dE));
60199566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&cellLabel));
60209566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&dsDef));
60219566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&fieldIS));
60229566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&plex));
6023083401c6SMatthew G. Knepley   }
6024083401c6SMatthew G. Knepley   /* Create label DSes
6025083401c6SMatthew G. Knepley      - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS
6026083401c6SMatthew G. Knepley   */
6027083401c6SMatthew G. Knepley   /* TODO Should check that labels are disjoint */
6028083401c6SMatthew G. Knepley   for (l = 0; l < Nl; ++l) {
6029083401c6SMatthew G. Knepley     DMLabel   label = labelSet[l];
603007218a29SMatthew G. Knepley     PetscDS   ds, dsIn = NULL;
6031083401c6SMatthew G. Knepley     IS        fields;
6032083401c6SMatthew G. Knepley     PetscInt *fld, nf;
6033083401c6SMatthew G. Knepley 
60349566063dSJacob Faibussowitsch     PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds));
60359371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60369371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) ++nf;
60379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nf, &fld));
60389371c9d4SSatish Balay     for (f = 0, nf = 0; f < Nf; ++f)
60399371c9d4SSatish Balay       if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f;
60409566063dSJacob Faibussowitsch     PetscCall(ISCreate(PETSC_COMM_SELF, &fields));
60419566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_"));
60429566063dSJacob Faibussowitsch     PetscCall(ISSetType(fields, ISGENERAL));
60439566063dSJacob Faibussowitsch     PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER));
60449566063dSJacob Faibussowitsch     PetscCall(PetscDSSetCoordinateDimension(ds, dE));
6045083401c6SMatthew G. Knepley     {
6046083401c6SMatthew G. Knepley       DMPolytopeType ct;
6047083401c6SMatthew G. Knepley       PetscInt       lStart, lEnd;
60485fedec97SMatthew G. Knepley       PetscBool      isCohesiveLocal = PETSC_FALSE, isCohesive;
60490122748bSMatthew G. Knepley 
60509566063dSJacob Faibussowitsch       PetscCall(DMLabelGetBounds(label, &lStart, &lEnd));
6051665f567fSMatthew G. Knepley       if (lStart >= 0) {
60529566063dSJacob Faibussowitsch         PetscCall(DMPlexGetCellType(dm, lStart, &ct));
6053412e9a14SMatthew G. Knepley         switch (ct) {
6054412e9a14SMatthew G. Knepley         case DM_POLYTOPE_POINT_PRISM_TENSOR:
6055412e9a14SMatthew G. Knepley         case DM_POLYTOPE_SEG_PRISM_TENSOR:
6056412e9a14SMatthew G. Knepley         case DM_POLYTOPE_TRI_PRISM_TENSOR:
6057d71ae5a4SJacob Faibussowitsch         case DM_POLYTOPE_QUAD_PRISM_TENSOR:
6058d71ae5a4SJacob Faibussowitsch           isCohesiveLocal = PETSC_TRUE;
6059d71ae5a4SJacob Faibussowitsch           break;
6060d71ae5a4SJacob Faibussowitsch         default:
6061d71ae5a4SJacob Faibussowitsch           break;
6062412e9a14SMatthew G. Knepley         }
6063665f567fSMatthew G. Knepley       }
6064462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm));
606507218a29SMatthew G. Knepley       if (isCohesive) {
606607218a29SMatthew G. Knepley         PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn));
606707218a29SMatthew G. Knepley         PetscCall(PetscDSSetCoordinateDimension(dsIn, dE));
606807218a29SMatthew G. Knepley       }
60695fedec97SMatthew G. Knepley       for (f = 0, nf = 0; f < Nf; ++f) {
60705fedec97SMatthew G. Knepley         if (label == dm->fields[f].label || !dm->fields[f].label) {
60715fedec97SMatthew G. Knepley           if (label == dm->fields[f].label) {
60729566063dSJacob Faibussowitsch             PetscCall(PetscDSSetDiscretization(ds, nf, NULL));
60739566063dSJacob Faibussowitsch             PetscCall(PetscDSSetCohesive(ds, nf, isCohesive));
607407218a29SMatthew G. Knepley             if (dsIn) {
607507218a29SMatthew G. Knepley               PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL));
607607218a29SMatthew G. Knepley               PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive));
607707218a29SMatthew G. Knepley             }
60785fedec97SMatthew G. Knepley           }
60795fedec97SMatthew G. Knepley           ++nf;
60805fedec97SMatthew G. Knepley         }
60815fedec97SMatthew G. Knepley       }
6082e5e52638SMatthew G. Knepley     }
608307218a29SMatthew G. Knepley     PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn));
608407218a29SMatthew G. Knepley     PetscCall(ISDestroy(&fields));
60859566063dSJacob Faibussowitsch     PetscCall(PetscDSDestroy(&ds));
608607218a29SMatthew G. Knepley     PetscCall(PetscDSDestroy(&dsIn));
6087e5e52638SMatthew G. Knepley   }
60889566063dSJacob Faibussowitsch   PetscCall(PetscFree(labelSet));
6089e5e52638SMatthew G. Knepley   /* Set fields in DSes */
6090083401c6SMatthew G. Knepley   for (s = 0; s < dm->Nds; ++s) {
6091083401c6SMatthew G. Knepley     PetscDS         ds     = dm->probs[s].ds;
609207218a29SMatthew G. Knepley     PetscDS         dsIn   = dm->probs[s].dsIn;
6093083401c6SMatthew G. Knepley     IS              fields = dm->probs[s].fields;
6094083401c6SMatthew G. Knepley     const PetscInt *fld;
60955fedec97SMatthew G. Knepley     PetscInt        nf, dsnf;
60965fedec97SMatthew G. Knepley     PetscBool       isCohesive;
6097e5e52638SMatthew G. Knepley 
60989566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsnf));
60999566063dSJacob Faibussowitsch     PetscCall(PetscDSIsCohesive(ds, &isCohesive));
61009566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(fields, &nf));
61019566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fields, &fld));
6102083401c6SMatthew G. Knepley     for (f = 0; f < nf; ++f) {
6103083401c6SMatthew G. Knepley       PetscObject  disc = dm->fields[fld[f]].disc;
61045fedec97SMatthew G. Knepley       PetscBool    isCohesiveField;
6105e5e52638SMatthew G. Knepley       PetscClassId id;
6106e5e52638SMatthew G. Knepley 
61075fedec97SMatthew G. Knepley       /* Handle DS with no fields */
61089566063dSJacob Faibussowitsch       if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField));
61095fedec97SMatthew G. Knepley       /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */
611007218a29SMatthew G. Knepley       if (isCohesive) {
611107218a29SMatthew G. Knepley         if (!isCohesiveField) {
611207218a29SMatthew G. Knepley           PetscObject bdDisc;
611307218a29SMatthew G. Knepley 
611407218a29SMatthew G. Knepley           PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc));
611507218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(ds, f, bdDisc));
611607218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
611707218a29SMatthew G. Knepley         } else {
61189566063dSJacob Faibussowitsch           PetscCall(PetscDSSetDiscretization(ds, f, disc));
611907218a29SMatthew G. Knepley           PetscCall(PetscDSSetDiscretization(dsIn, f, disc));
612007218a29SMatthew G. Knepley         }
612107218a29SMatthew G. Knepley       } else {
612207218a29SMatthew G. Knepley         PetscCall(PetscDSSetDiscretization(ds, f, disc));
612307218a29SMatthew G. Knepley       }
6124083401c6SMatthew G. Knepley       /* We allow people to have placeholder fields and construct the Section by hand */
61259566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetClassId(disc, &id));
6126e5e52638SMatthew G. Knepley       if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE;
6127e5e52638SMatthew G. Knepley     }
61289566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fields, &fld));
6129e5e52638SMatthew G. Knepley   }
6130f9244615SMatthew G. Knepley   /* Allow k-jet tabulation */
61319566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg));
6132f9244615SMatthew G. Knepley   if (flg) {
61333b4aee56SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
61343b4aee56SMatthew G. Knepley       PetscDS  ds   = dm->probs[s].ds;
613507218a29SMatthew G. Knepley       PetscDS  dsIn = dm->probs[s].dsIn;
61363b4aee56SMatthew G. Knepley       PetscInt Nf, f;
61373b4aee56SMatthew G. Knepley 
61389566063dSJacob Faibussowitsch       PetscCall(PetscDSGetNumFields(ds, &Nf));
613907218a29SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
614007218a29SMatthew G. Knepley         PetscCall(PetscDSSetJetDegree(ds, f, k));
614107218a29SMatthew G. Knepley         if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k));
614207218a29SMatthew G. Knepley       }
61433b4aee56SMatthew G. Knepley     }
6144f9244615SMatthew G. Knepley   }
6145e5e52638SMatthew G. Knepley   /* Setup DSes */
6146e5e52638SMatthew G. Knepley   if (doSetup) {
614707218a29SMatthew G. Knepley     for (s = 0; s < dm->Nds; ++s) {
6148cf1363e4SMatthew G. Knepley       if (dm->setfromoptionscalled) {
6149cf1363e4SMatthew G. Knepley         PetscCall(PetscDSSetFromOptions(dm->probs[s].ds));
6150cf1363e4SMatthew G. Knepley         if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn));
6151cf1363e4SMatthew G. Knepley       }
615207218a29SMatthew G. Knepley       PetscCall(PetscDSSetUp(dm->probs[s].ds));
615307218a29SMatthew G. Knepley       if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn));
615407218a29SMatthew G. Knepley     }
6155e5e52638SMatthew G. Knepley   }
61563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6157e5e52638SMatthew G. Knepley }
6158e5e52638SMatthew G. Knepley 
6159e5e52638SMatthew G. Knepley /*@
6160d2b2dc1eSMatthew G. Knepley   DMUseTensorOrder - Use a tensor product closure ordering for the default section
6161d2b2dc1eSMatthew G. Knepley 
6162d2b2dc1eSMatthew G. Knepley   Input Parameters:
6163d2b2dc1eSMatthew G. Knepley + dm     - The DM
6164d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order
6165d2b2dc1eSMatthew G. Knepley 
6166d2b2dc1eSMatthew G. Knepley   Level: developer
6167d2b2dc1eSMatthew G. Knepley 
6168d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()`
6169d2b2dc1eSMatthew G. Knepley @*/
6170d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor)
6171d2b2dc1eSMatthew G. Knepley {
6172d2b2dc1eSMatthew G. Knepley   PetscInt  Nf;
6173d2b2dc1eSMatthew G. Knepley   PetscBool reorder = PETSC_TRUE, isPlex;
6174d2b2dc1eSMatthew G. Knepley 
6175d2b2dc1eSMatthew G. Knepley   PetscFunctionBegin;
6176d2b2dc1eSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex));
6177d2b2dc1eSMatthew G. Knepley   PetscCall(DMGetNumFields(dm, &Nf));
6178d2b2dc1eSMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
6179d2b2dc1eSMatthew G. Knepley     PetscObject  obj;
6180d2b2dc1eSMatthew G. Knepley     PetscClassId id;
6181d2b2dc1eSMatthew G. Knepley 
6182d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetField(dm, f, NULL, &obj));
6183d2b2dc1eSMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
6184d2b2dc1eSMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
6185d2b2dc1eSMatthew G. Knepley       PetscSpace sp;
6186d2b2dc1eSMatthew G. Knepley       PetscBool  tensor;
6187d2b2dc1eSMatthew G. Knepley 
6188d2b2dc1eSMatthew G. Knepley       PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp));
6189d2b2dc1eSMatthew G. Knepley       PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor));
6190d2b2dc1eSMatthew G. Knepley       reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE;
6191d2b2dc1eSMatthew G. Knepley     } else reorder = PETSC_FALSE;
6192d2b2dc1eSMatthew G. Knepley   }
6193d2b2dc1eSMatthew G. Knepley   if (tensor) {
6194d2b2dc1eSMatthew G. Knepley     if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL));
6195d2b2dc1eSMatthew G. Knepley   } else {
6196d2b2dc1eSMatthew G. Knepley     PetscSection s;
6197d2b2dc1eSMatthew G. Knepley 
6198d2b2dc1eSMatthew G. Knepley     PetscCall(DMGetLocalSection(dm, &s));
6199d2b2dc1eSMatthew G. Knepley     if (s) PetscCall(PetscSectionResetClosurePermutation(s));
6200d2b2dc1eSMatthew G. Knepley   }
6201d2b2dc1eSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6202d2b2dc1eSMatthew G. Knepley }
6203d2b2dc1eSMatthew G. Knepley 
6204d2b2dc1eSMatthew G. Knepley /*@
6205bb7acecfSBarry Smith   DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information.
62067f96f943SMatthew G. Knepley 
620720f4b53cSBarry Smith   Collective
6208f2cacb80SMatthew G. Knepley 
62097f96f943SMatthew G. Knepley   Input Parameters:
6210bb7acecfSBarry Smith + dm   - The `DM`
62117f96f943SMatthew G. Knepley - time - The time
62127f96f943SMatthew G. Knepley 
62137f96f943SMatthew G. Knepley   Output Parameters:
621420f4b53cSBarry Smith + u   - The vector will be filled with exact solution values, or `NULL`
621520f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL`
621620f4b53cSBarry Smith 
621720f4b53cSBarry Smith   Level: developer
62187f96f943SMatthew G. Knepley 
6219bb7acecfSBarry Smith   Note:
6220bb7acecfSBarry Smith   The user must call `PetscDSSetExactSolution()` before using this routine
62217f96f943SMatthew G. Knepley 
62221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()`
62237f96f943SMatthew G. Knepley @*/
6224d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t)
6225d71ae5a4SJacob Faibussowitsch {
62267f96f943SMatthew G. Knepley   PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx);
62277f96f943SMatthew G. Knepley   void   **ectxs;
6228f60fa741SMatthew G. Knepley   Vec      locu, locu_t;
62297f96f943SMatthew G. Knepley   PetscInt Nf, Nds, s;
62307f96f943SMatthew G. Knepley 
62317f96f943SMatthew G. Knepley   PetscFunctionBegin;
6232f2cacb80SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6233f60fa741SMatthew G. Knepley   if (u) {
6234f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u, VEC_CLASSID, 3);
6235f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu));
6236f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu, 0.));
6237f60fa741SMatthew G. Knepley   }
6238f60fa741SMatthew G. Knepley   if (u_t) {
6239f60fa741SMatthew G. Knepley     PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4);
6240f60fa741SMatthew G. Knepley     PetscCall(DMGetLocalVector(dm, &locu_t));
6241f60fa741SMatthew G. Knepley     PetscCall(VecSet(locu_t, 0.));
6242f60fa741SMatthew G. Knepley   }
62439566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
62449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs));
62459566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
62467f96f943SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
62477f96f943SMatthew G. Knepley     PetscDS         ds;
62487f96f943SMatthew G. Knepley     DMLabel         label;
62497f96f943SMatthew G. Knepley     IS              fieldIS;
62507f96f943SMatthew G. Knepley     const PetscInt *fields, id = 1;
62517f96f943SMatthew G. Knepley     PetscInt        dsNf, f;
62527f96f943SMatthew G. Knepley 
625307218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
62549566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
62559566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(fieldIS, &fields));
62569566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(exacts, Nf));
62579566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ectxs, Nf));
6258f2cacb80SMatthew G. Knepley     if (u) {
6259f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6260f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu));
6261f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu));
62627f96f943SMatthew G. Knepley     }
6263f2cacb80SMatthew G. Knepley     if (u_t) {
62649566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(exacts, Nf));
62659566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ectxs, Nf));
6266f60fa741SMatthew G. Knepley       for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]]));
6267f60fa741SMatthew G. Knepley       if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6268f60fa741SMatthew G. Knepley       else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t));
6269f2cacb80SMatthew G. Knepley     }
62709566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(fieldIS, &fields));
6271f2cacb80SMatthew G. Knepley   }
6272f2cacb80SMatthew G. Knepley   if (u) {
62739566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution"));
62749566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_"));
6275f2cacb80SMatthew G. Knepley   }
6276f2cacb80SMatthew G. Knepley   if (u_t) {
62779566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative"));
62789566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_"));
6279f2cacb80SMatthew G. Knepley   }
62809566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exacts, ectxs));
6281f60fa741SMatthew G. Knepley   if (u) {
6282f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u));
6283f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u));
6284f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu));
6285f60fa741SMatthew G. Knepley   }
6286f60fa741SMatthew G. Knepley   if (u_t) {
6287f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t));
6288f60fa741SMatthew G. Knepley     PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t));
6289f60fa741SMatthew G. Knepley     PetscCall(DMRestoreLocalVector(dm, &locu_t));
6290f60fa741SMatthew G. Knepley   }
62913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
62927f96f943SMatthew G. Knepley }
62937f96f943SMatthew G. Knepley 
6294bb4b53efSMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscInt minDegree, PetscInt maxDegree, PetscDS ds, PetscDS dsIn)
6295d71ae5a4SJacob Faibussowitsch {
629607218a29SMatthew G. Knepley   PetscDS dsNew, dsInNew = NULL;
629745480ffeSMatthew G. Knepley 
629845480ffeSMatthew G. Knepley   PetscFunctionBegin;
62999566063dSJacob Faibussowitsch   PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew));
6300bb4b53efSMatthew G. Knepley   PetscCall(PetscDSCopy(ds, minDegree, maxDegree, dm, dsNew));
630107218a29SMatthew G. Knepley   if (dsIn) {
630207218a29SMatthew G. Knepley     PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew));
6303bb4b53efSMatthew G. Knepley     PetscCall(PetscDSCopy(dsIn, minDegree, maxDegree, dm, dsInNew));
630445480ffeSMatthew G. Knepley   }
630507218a29SMatthew G. Knepley   PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew));
63069566063dSJacob Faibussowitsch   PetscCall(PetscDSDestroy(&dsNew));
630707218a29SMatthew G. Knepley   PetscCall(PetscDSDestroy(&dsInNew));
63083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
630945480ffeSMatthew G. Knepley }
631045480ffeSMatthew G. Knepley 
63117f96f943SMatthew G. Knepley /*@
6312bb7acecfSBarry Smith   DMCopyDS - Copy the discrete systems for the `DM` into another `DM`
6313e5e52638SMatthew G. Knepley 
631420f4b53cSBarry Smith   Collective
6315e5e52638SMatthew G. Knepley 
6316bb4b53efSMatthew G. Knepley   Input Parameters:
6317bb4b53efSMatthew G. Knepley + dm        - The `DM`
6318bb4b53efSMatthew G. Knepley . minDegree - Minimum degree for a discretization, or `PETSC_DETERMINE` for no limit
6319bb4b53efSMatthew G. Knepley - maxDegree - Maximum degree for a discretization, or `PETSC_DETERMINE` for no limit
6320e5e52638SMatthew G. Knepley 
6321e5e52638SMatthew G. Knepley   Output Parameter:
6322bb7acecfSBarry Smith . newdm - The `DM`
6323e5e52638SMatthew G. Knepley 
6324e5e52638SMatthew G. Knepley   Level: advanced
6325e5e52638SMatthew G. Knepley 
63261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`
6327e5e52638SMatthew G. Knepley @*/
6328bb4b53efSMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, PetscInt minDegree, PetscInt maxDegree, DM newdm)
6329d71ae5a4SJacob Faibussowitsch {
6330e5e52638SMatthew G. Knepley   PetscInt Nds, s;
6331e5e52638SMatthew G. Knepley 
6332e5e52638SMatthew G. Knepley   PetscFunctionBegin;
63333ba16761SJacob Faibussowitsch   if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS);
63349566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
63359566063dSJacob Faibussowitsch   PetscCall(DMClearDS(newdm));
6336e5e52638SMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
6337e5e52638SMatthew G. Knepley     DMLabel  label;
6338b3cf3223SMatthew G. Knepley     IS       fields;
633907218a29SMatthew G. Knepley     PetscDS  ds, dsIn, newds;
6340783e2ec8SMatthew G. Knepley     PetscInt Nbd, bd;
6341e5e52638SMatthew G. Knepley 
634207218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn));
6343b8025e53SMatthew G. Knepley     /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */
6344bb4b53efSMatthew G. Knepley     PetscCall(DMTransferDS_Internal(newdm, label, fields, minDegree, maxDegree, ds, dsIn));
6345d5b43468SJose E. Roman     /* Complete new labels in the new DS */
634607218a29SMatthew G. Knepley     PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL));
63479566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumBoundary(newds, &Nbd));
6348783e2ec8SMatthew G. Knepley     for (bd = 0; bd < Nbd; ++bd) {
6349b8025e53SMatthew G. Knepley       PetscWeakForm wf;
635045480ffeSMatthew G. Knepley       DMLabel       label;
6351783e2ec8SMatthew G. Knepley       PetscInt      field;
6352783e2ec8SMatthew G. Knepley 
63539566063dSJacob Faibussowitsch       PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL));
63549566063dSJacob Faibussowitsch       PetscCall(PetscWeakFormReplaceLabel(wf, label));
6355783e2ec8SMatthew G. Knepley     }
6356e5e52638SMatthew G. Knepley   }
6357799db056SMatthew G. Knepley   PetscCall(DMCompleteBCLabels_Internal(newdm));
63583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6359e5e52638SMatthew G. Knepley }
6360e5e52638SMatthew G. Knepley 
6361e5e52638SMatthew G. Knepley /*@
6362bb7acecfSBarry Smith   DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM`
6363e5e52638SMatthew G. Knepley 
636420f4b53cSBarry Smith   Collective
6365e5e52638SMatthew G. Knepley 
6366e5e52638SMatthew G. Knepley   Input Parameter:
6367bb7acecfSBarry Smith . dm - The `DM`
6368e5e52638SMatthew G. Knepley 
6369e5e52638SMatthew G. Knepley   Output Parameter:
6370bb7acecfSBarry Smith . newdm - The `DM`
6371e5e52638SMatthew G. Knepley 
6372e5e52638SMatthew G. Knepley   Level: advanced
6373e5e52638SMatthew G. Knepley 
637473ff1848SBarry Smith   Developer Note:
6375bb7acecfSBarry Smith   Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation
6376bb7acecfSBarry Smith 
63771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()`
6378e5e52638SMatthew G. Knepley @*/
6379d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm)
6380d71ae5a4SJacob Faibussowitsch {
6381e5e52638SMatthew G. Knepley   PetscFunctionBegin;
6382bb4b53efSMatthew G. Knepley   PetscCall(DMCopyFields(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
6383bb4b53efSMatthew G. Knepley   PetscCall(DMCopyDS(dm, PETSC_DETERMINE, PETSC_DETERMINE, newdm));
63843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6385e5e52638SMatthew G. Knepley }
6386e5e52638SMatthew G. Knepley 
6387c73cfb54SMatthew G. Knepley /*@
6388bb7acecfSBarry Smith   DMGetDimension - Return the topological dimension of the `DM`
6389c73cfb54SMatthew G. Knepley 
639020f4b53cSBarry Smith   Not Collective
6391c73cfb54SMatthew G. Knepley 
6392c73cfb54SMatthew G. Knepley   Input Parameter:
6393bb7acecfSBarry Smith . dm - The `DM`
6394c73cfb54SMatthew G. Knepley 
6395c73cfb54SMatthew G. Knepley   Output Parameter:
6396c73cfb54SMatthew G. Knepley . dim - The topological dimension
6397c73cfb54SMatthew G. Knepley 
6398c73cfb54SMatthew G. Knepley   Level: beginner
6399c73cfb54SMatthew G. Knepley 
64001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()`
6401c73cfb54SMatthew G. Knepley @*/
6402d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim)
6403d71ae5a4SJacob Faibussowitsch {
6404c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6405c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64064f572ea9SToby Isaac   PetscAssertPointer(dim, 2);
6407c73cfb54SMatthew G. Knepley   *dim = dm->dim;
64083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6409c73cfb54SMatthew G. Knepley }
6410c73cfb54SMatthew G. Knepley 
6411c73cfb54SMatthew G. Knepley /*@
6412bb7acecfSBarry Smith   DMSetDimension - Set the topological dimension of the `DM`
6413c73cfb54SMatthew G. Knepley 
641420f4b53cSBarry Smith   Collective
6415c73cfb54SMatthew G. Knepley 
6416c73cfb54SMatthew G. Knepley   Input Parameters:
6417bb7acecfSBarry Smith + dm  - The `DM`
6418c73cfb54SMatthew G. Knepley - dim - The topological dimension
6419c73cfb54SMatthew G. Knepley 
6420c73cfb54SMatthew G. Knepley   Level: beginner
6421c73cfb54SMatthew G. Knepley 
64221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()`
6423c73cfb54SMatthew G. Knepley @*/
6424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim)
6425d71ae5a4SJacob Faibussowitsch {
6426e5e52638SMatthew G. Knepley   PetscDS  ds;
642745480ffeSMatthew G. Knepley   PetscInt Nds, n;
6428f17e8794SMatthew G. Knepley 
6429c73cfb54SMatthew G. Knepley   PetscFunctionBegin;
6430c73cfb54SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6431c73cfb54SMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, dim, 2);
6432c73cfb54SMatthew G. Knepley   dm->dim = dim;
6433d17bd122SMatthew G. Knepley   if (dm->dim >= 0) {
64349566063dSJacob Faibussowitsch     PetscCall(DMGetNumDS(dm, &Nds));
643545480ffeSMatthew G. Knepley     for (n = 0; n < Nds; ++n) {
643607218a29SMatthew G. Knepley       PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL));
64379566063dSJacob Faibussowitsch       if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim));
643845480ffeSMatthew G. Knepley     }
6439d17bd122SMatthew G. Knepley   }
64403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6441c73cfb54SMatthew G. Knepley }
6442c73cfb54SMatthew G. Knepley 
6443793f3fe5SMatthew G. Knepley /*@
6444793f3fe5SMatthew G. Knepley   DMGetDimPoints - Get the half-open interval for all points of a given dimension
6445793f3fe5SMatthew G. Knepley 
644620f4b53cSBarry Smith   Collective
6447793f3fe5SMatthew G. Knepley 
6448793f3fe5SMatthew G. Knepley   Input Parameters:
6449bb7acecfSBarry Smith + dm  - the `DM`
6450793f3fe5SMatthew G. Knepley - dim - the dimension
6451793f3fe5SMatthew G. Knepley 
6452793f3fe5SMatthew G. Knepley   Output Parameters:
6453793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension
6454aa049354SPatrick Sanan - pEnd   - The first point following points of the given dimension
6455793f3fe5SMatthew G. Knepley 
645620f4b53cSBarry Smith   Level: intermediate
645720f4b53cSBarry Smith 
6458793f3fe5SMatthew G. Knepley   Note:
6459793f3fe5SMatthew G. Knepley   The points are vertices in the Hasse diagram encoding the topology. This is explained in
6460a8d69d7bSBarry Smith   https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme,
6461793f3fe5SMatthew G. Knepley   then the interval is empty.
6462793f3fe5SMatthew G. Knepley 
64631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()`
6464793f3fe5SMatthew G. Knepley @*/
6465d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd)
6466d71ae5a4SJacob Faibussowitsch {
6467793f3fe5SMatthew G. Knepley   PetscInt d;
6468793f3fe5SMatthew G. Knepley 
6469793f3fe5SMatthew G. Knepley   PetscFunctionBegin;
6470793f3fe5SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
64719566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(dm, &d));
64727a8be351SBarry Smith   PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim);
6473dbbe0bcdSBarry Smith   PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd);
64743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6475793f3fe5SMatthew G. Knepley }
6476793f3fe5SMatthew G. Knepley 
64776636e97aSMatthew G Knepley /*@
6478bb7acecfSBarry Smith   DMGetOutputDM - Retrieve the `DM` associated with the layout for output
6479f4d763aaSMatthew G. Knepley 
648020f4b53cSBarry Smith   Collective
64818f700142SStefano Zampini 
6482f4d763aaSMatthew G. Knepley   Input Parameter:
6483bb7acecfSBarry Smith . dm - The original `DM`
6484f4d763aaSMatthew G. Knepley 
6485f4d763aaSMatthew G. Knepley   Output Parameter:
6486bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output
6487f4d763aaSMatthew G. Knepley 
6488f4d763aaSMatthew G. Knepley   Level: intermediate
6489f4d763aaSMatthew G. Knepley 
6490bb7acecfSBarry Smith   Note:
6491bb7acecfSBarry Smith   In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary
6492bb7acecfSBarry Smith   conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the
6493bb7acecfSBarry Smith   locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof.
6494bb7acecfSBarry Smith 
64951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()`
6496f4d763aaSMatthew G. Knepley @*/
6497d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm)
6498d71ae5a4SJacob Faibussowitsch {
6499c26acbdeSMatthew G. Knepley   PetscSection section;
6500eb9d3e4dSMatthew G. Knepley   IS           perm;
6501eb9d3e4dSMatthew G. Knepley   PetscBool    hasConstraints, newDM, gnewDM;
650292a26154SJames Wright   PetscInt     num_face_sfs = 0;
650314f150ffSMatthew G. Knepley 
650414f150ffSMatthew G. Knepley   PetscFunctionBegin;
650514f150ffSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65064f572ea9SToby Isaac   PetscAssertPointer(odm, 2);
65079566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &section));
65089566063dSJacob Faibussowitsch   PetscCall(PetscSectionHasConstraints(section, &hasConstraints));
6509eb9d3e4dSMatthew G. Knepley   PetscCall(PetscSectionGetPermutation(section, &perm));
651092a26154SJames Wright   PetscCall(DMPlexGetIsoperiodicFaceSF(dm, &num_face_sfs, NULL));
651192a26154SJames Wright   newDM = hasConstraints || perm || (num_face_sfs > 0) ? PETSC_TRUE : PETSC_FALSE;
6512462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm)));
6513eb9d3e4dSMatthew G. Knepley   if (!gnewDM) {
6514c26acbdeSMatthew G. Knepley     *odm = dm;
65153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
6516c26acbdeSMatthew G. Knepley   }
651714f150ffSMatthew G. Knepley   if (!dm->dmBC) {
6518c26acbdeSMatthew G. Knepley     PetscSection newSection, gsection;
651992a26154SJames Wright     PetscSF      sf, sfNatural;
6520eb9d3e4dSMatthew G. Knepley     PetscBool    usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE;
652114f150ffSMatthew G. Knepley 
65229566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &dm->dmBC));
65239566063dSJacob Faibussowitsch     PetscCall(DMCopyDisc(dm, dm->dmBC));
65249566063dSJacob Faibussowitsch     PetscCall(PetscSectionClone(section, &newSection));
65259566063dSJacob Faibussowitsch     PetscCall(DMSetLocalSection(dm->dmBC, newSection));
65269566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&newSection));
652792a26154SJames Wright     PetscCall(DMGetNaturalSF(dm, &sfNatural));
652892a26154SJames Wright     PetscCall(DMSetNaturalSF(dm->dmBC, sfNatural));
65299566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm->dmBC, &sf));
6530eb9d3e4dSMatthew G. Knepley     PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection));
65319566063dSJacob Faibussowitsch     PetscCall(DMSetGlobalSection(dm->dmBC, gsection));
65329566063dSJacob Faibussowitsch     PetscCall(PetscSectionDestroy(&gsection));
653314f150ffSMatthew G. Knepley   }
653414f150ffSMatthew G. Knepley   *odm = dm->dmBC;
65353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
653614f150ffSMatthew G. Knepley }
6537f4d763aaSMatthew G. Knepley 
6538f4d763aaSMatthew G. Knepley /*@
6539cdb7a50dSMatthew G. Knepley   DMGetOutputSequenceNumber - Retrieve the sequence number/value for output
6540f4d763aaSMatthew G. Knepley 
6541f4d763aaSMatthew G. Knepley   Input Parameter:
6542bb7acecfSBarry Smith . dm - The original `DM`
6543f4d763aaSMatthew G. Knepley 
6544cdb7a50dSMatthew G. Knepley   Output Parameters:
6545cdb7a50dSMatthew G. Knepley + num - The output sequence number
6546cdb7a50dSMatthew G. Knepley - val - The output sequence value
6547f4d763aaSMatthew G. Knepley 
6548f4d763aaSMatthew G. Knepley   Level: intermediate
6549f4d763aaSMatthew G. Knepley 
6550bb7acecfSBarry Smith   Note:
6551bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6552bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6553bb7acecfSBarry Smith 
655473ff1848SBarry Smith   Developer Note:
6555bb7acecfSBarry Smith   The `DM` serves as a convenient place to store the current iteration value. The iteration is not
6556bb7acecfSBarry Smith   not directly related to the `DM`.
6557f4d763aaSMatthew G. Knepley 
65581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6559f4d763aaSMatthew G. Knepley @*/
6560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val)
6561d71ae5a4SJacob Faibussowitsch {
6562f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6563f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
65649371c9d4SSatish Balay   if (num) {
65654f572ea9SToby Isaac     PetscAssertPointer(num, 2);
65669371c9d4SSatish Balay     *num = dm->outputSequenceNum;
65679371c9d4SSatish Balay   }
65689371c9d4SSatish Balay   if (val) {
65694f572ea9SToby Isaac     PetscAssertPointer(val, 3);
65709371c9d4SSatish Balay     *val = dm->outputSequenceVal;
65719371c9d4SSatish Balay   }
65723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6573f4d763aaSMatthew G. Knepley }
6574f4d763aaSMatthew G. Knepley 
6575f4d763aaSMatthew G. Knepley /*@
6576cdb7a50dSMatthew G. Knepley   DMSetOutputSequenceNumber - Set the sequence number/value for output
6577f4d763aaSMatthew G. Knepley 
6578f4d763aaSMatthew G. Knepley   Input Parameters:
6579bb7acecfSBarry Smith + dm  - The original `DM`
6580cdb7a50dSMatthew G. Knepley . num - The output sequence number
6581cdb7a50dSMatthew G. Knepley - val - The output sequence value
6582f4d763aaSMatthew G. Knepley 
6583f4d763aaSMatthew G. Knepley   Level: intermediate
6584f4d763aaSMatthew G. Knepley 
6585bb7acecfSBarry Smith   Note:
6586bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6587bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6588f4d763aaSMatthew G. Knepley 
65891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`
6590f4d763aaSMatthew G. Knepley @*/
6591d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val)
6592d71ae5a4SJacob Faibussowitsch {
6593f4d763aaSMatthew G. Knepley   PetscFunctionBegin;
6594f4d763aaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6595f4d763aaSMatthew G. Knepley   dm->outputSequenceNum = num;
6596cdb7a50dSMatthew G. Knepley   dm->outputSequenceVal = val;
65973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6598cdb7a50dSMatthew G. Knepley }
6599cdb7a50dSMatthew G. Knepley 
66005d83a8b1SBarry Smith /*@
6601bb7acecfSBarry Smith   DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer`
6602cdb7a50dSMatthew G. Knepley 
6603cdb7a50dSMatthew G. Knepley   Input Parameters:
6604bb7acecfSBarry Smith + dm     - The original `DM`
6605b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6606cdb7a50dSMatthew G. Knepley . name   - The sequence name
6607cdb7a50dSMatthew G. Knepley - num    - The output sequence number
6608cdb7a50dSMatthew G. Knepley 
6609cdb7a50dSMatthew G. Knepley   Output Parameter:
6610cdb7a50dSMatthew G. Knepley . val - The output sequence value
6611cdb7a50dSMatthew G. Knepley 
6612cdb7a50dSMatthew G. Knepley   Level: intermediate
6613cdb7a50dSMatthew G. Knepley 
6614bb7acecfSBarry Smith   Note:
6615bb7acecfSBarry Smith   This is intended for output that should appear in sequence, for instance
6616bb7acecfSBarry Smith   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6617bb7acecfSBarry Smith 
661873ff1848SBarry Smith   Developer Note:
6619bb7acecfSBarry Smith   It is unclear at the user API level why a `DM` is needed as input
6620cdb7a50dSMatthew G. Knepley 
66211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6622cdb7a50dSMatthew G. Knepley @*/
6623b2033f5dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char name[], PetscInt num, PetscReal *val)
6624d71ae5a4SJacob Faibussowitsch {
6625cdb7a50dSMatthew G. Knepley   PetscBool ishdf5;
6626cdb7a50dSMatthew G. Knepley 
6627cdb7a50dSMatthew G. Knepley   PetscFunctionBegin;
6628cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6629cdb7a50dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6630b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
66314f572ea9SToby Isaac   PetscAssertPointer(val, 5);
66329566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6633cdb7a50dSMatthew G. Knepley   if (ishdf5) {
6634cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6635cdb7a50dSMatthew G. Knepley     PetscScalar value;
6636cdb7a50dSMatthew G. Knepley 
66379566063dSJacob Faibussowitsch     PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer));
66384aeb217fSMatthew G. Knepley     *val = PetscRealPart(value);
6639cdb7a50dSMatthew G. Knepley #endif
6640cdb7a50dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
66413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6642f4d763aaSMatthew G. Knepley }
66438e4ac7eaSMatthew G. Knepley 
66448e4ac7eaSMatthew G. Knepley /*@
6645b2033f5dSMatthew G. Knepley   DMGetOutputSequenceLength - Retrieve the number of sequence values from a `PetscViewer`
6646b2033f5dSMatthew G. Knepley 
6647b2033f5dSMatthew G. Knepley   Input Parameters:
6648b2033f5dSMatthew G. Knepley + dm     - The original `DM`
6649b2033f5dSMatthew G. Knepley . viewer - The `PetscViewer` to get it from
6650b2033f5dSMatthew G. Knepley - name   - The sequence name
6651b2033f5dSMatthew G. Knepley 
6652b2033f5dSMatthew G. Knepley   Output Parameter:
6653b2033f5dSMatthew G. Knepley . len - The length of the output sequence
6654b2033f5dSMatthew G. Knepley 
6655b2033f5dSMatthew G. Knepley   Level: intermediate
6656b2033f5dSMatthew G. Knepley 
6657b2033f5dSMatthew G. Knepley   Note:
6658b2033f5dSMatthew G. Knepley   This is intended for output that should appear in sequence, for instance
6659b2033f5dSMatthew G. Knepley   a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system.
6660b2033f5dSMatthew G. Knepley 
6661b2033f5dSMatthew G. Knepley   Developer Note:
6662b2033f5dSMatthew G. Knepley   It is unclear at the user API level why a `DM` is needed as input
6663b2033f5dSMatthew G. Knepley 
6664b2033f5dSMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()`
6665b2033f5dSMatthew G. Knepley @*/
6666b2033f5dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceLength(DM dm, PetscViewer viewer, const char name[], PetscInt *len)
6667b2033f5dSMatthew G. Knepley {
6668b2033f5dSMatthew G. Knepley   PetscBool ishdf5;
6669b2033f5dSMatthew G. Knepley 
6670b2033f5dSMatthew G. Knepley   PetscFunctionBegin;
6671b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
6672b2033f5dSMatthew G. Knepley   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
6673b2033f5dSMatthew G. Knepley   PetscAssertPointer(name, 3);
6674b2033f5dSMatthew G. Knepley   PetscAssertPointer(len, 4);
6675b2033f5dSMatthew G. Knepley   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
6676b2033f5dSMatthew G. Knepley   if (ishdf5) {
6677b2033f5dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5)
6678b2033f5dSMatthew G. Knepley     PetscCall(DMSequenceGetLength_HDF5_Internal(dm, name, len, viewer));
6679b2033f5dSMatthew G. Knepley #endif
6680b2033f5dSMatthew G. Knepley   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()");
6681b2033f5dSMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
6682b2033f5dSMatthew G. Knepley }
6683b2033f5dSMatthew G. Knepley 
6684b2033f5dSMatthew G. Knepley /*@
6685bb7acecfSBarry Smith   DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
66868e4ac7eaSMatthew G. Knepley 
668720f4b53cSBarry Smith   Not Collective
66888e4ac7eaSMatthew G. Knepley 
66898e4ac7eaSMatthew G. Knepley   Input Parameter:
6690bb7acecfSBarry Smith . dm - The `DM`
66918e4ac7eaSMatthew G. Knepley 
66928e4ac7eaSMatthew G. Knepley   Output Parameter:
6693bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
66948e4ac7eaSMatthew G. Knepley 
66958e4ac7eaSMatthew G. Knepley   Level: beginner
66968e4ac7eaSMatthew G. Knepley 
66971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()`
66988e4ac7eaSMatthew G. Knepley @*/
6699d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural)
6700d71ae5a4SJacob Faibussowitsch {
67018e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
67028e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67034f572ea9SToby Isaac   PetscAssertPointer(useNatural, 2);
67048e4ac7eaSMatthew G. Knepley   *useNatural = dm->useNatural;
67053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67068e4ac7eaSMatthew G. Knepley }
67078e4ac7eaSMatthew G. Knepley 
67088e4ac7eaSMatthew G. Knepley /*@
6709bb7acecfSBarry Smith   DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel
67108e4ac7eaSMatthew G. Knepley 
671120f4b53cSBarry Smith   Collective
67128e4ac7eaSMatthew G. Knepley 
67138e4ac7eaSMatthew G. Knepley   Input Parameters:
6714bb7acecfSBarry Smith + dm         - The `DM`
6715bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution
67168e4ac7eaSMatthew G. Knepley 
671773ff1848SBarry Smith   Level: beginner
671873ff1848SBarry Smith 
6719bb7acecfSBarry Smith   Note:
6720bb7acecfSBarry Smith   This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()`
67215d3b26e6SMatthew G. Knepley 
67221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()`
67238e4ac7eaSMatthew G. Knepley @*/
6724d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural)
6725d71ae5a4SJacob Faibussowitsch {
67268e4ac7eaSMatthew G. Knepley   PetscFunctionBegin;
67278e4ac7eaSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67288833efb5SBlaise Bourdin   PetscValidLogicalCollectiveBool(dm, useNatural, 2);
67298e4ac7eaSMatthew G. Knepley   dm->useNatural = useNatural;
67303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
67318e4ac7eaSMatthew G. Knepley }
6732c58f1c22SToby Isaac 
6733cc4c1da9SBarry Smith /*@
6734bb7acecfSBarry Smith   DMCreateLabel - Create a label of the given name if it does not already exist in the `DM`
6735c58f1c22SToby Isaac 
6736c58f1c22SToby Isaac   Not Collective
6737c58f1c22SToby Isaac 
6738c58f1c22SToby Isaac   Input Parameters:
6739bb7acecfSBarry Smith + dm   - The `DM` object
6740c58f1c22SToby Isaac - name - The label name
6741c58f1c22SToby Isaac 
6742c58f1c22SToby Isaac   Level: intermediate
6743c58f1c22SToby Isaac 
67441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6745c58f1c22SToby Isaac @*/
6746d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[])
6747d71ae5a4SJacob Faibussowitsch {
67485d80c0bfSVaclav Hapla   PetscBool flg;
67495d80c0bfSVaclav Hapla   DMLabel   label;
6750c58f1c22SToby Isaac 
6751c58f1c22SToby Isaac   PetscFunctionBegin;
6752c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67534f572ea9SToby Isaac   PetscAssertPointer(name, 2);
67549566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
6755c58f1c22SToby Isaac   if (!flg) {
67569566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67579566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67589566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
6759c58f1c22SToby Isaac   }
67603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6761c58f1c22SToby Isaac }
6762c58f1c22SToby Isaac 
6763cc4c1da9SBarry Smith /*@
6764bb7acecfSBarry Smith   DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index.
67650fdc7489SMatthew Knepley 
67660fdc7489SMatthew Knepley   Not Collective
67670fdc7489SMatthew Knepley 
67680fdc7489SMatthew Knepley   Input Parameters:
6769bb7acecfSBarry Smith + dm   - The `DM` object
67700fdc7489SMatthew Knepley . l    - The index for the label
67710fdc7489SMatthew Knepley - name - The label name
67720fdc7489SMatthew Knepley 
67730fdc7489SMatthew Knepley   Level: intermediate
67740fdc7489SMatthew Knepley 
67751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
67760fdc7489SMatthew Knepley @*/
6777d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[])
6778d71ae5a4SJacob Faibussowitsch {
67790fdc7489SMatthew Knepley   DMLabelLink orig, prev = NULL;
67800fdc7489SMatthew Knepley   DMLabel     label;
67810fdc7489SMatthew Knepley   PetscInt    Nl, m;
67820fdc7489SMatthew Knepley   PetscBool   flg, match;
67830fdc7489SMatthew Knepley   const char *lname;
67840fdc7489SMatthew Knepley 
67850fdc7489SMatthew Knepley   PetscFunctionBegin;
67860fdc7489SMatthew Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
67874f572ea9SToby Isaac   PetscAssertPointer(name, 3);
67889566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, name, &flg));
67890fdc7489SMatthew Knepley   if (!flg) {
67909566063dSJacob Faibussowitsch     PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label));
67919566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dm, label));
67929566063dSJacob Faibussowitsch     PetscCall(DMLabelDestroy(&label));
67930fdc7489SMatthew Knepley   }
67949566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
679563a3b9bcSJacob Faibussowitsch   PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl);
67960fdc7489SMatthew Knepley   for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) {
67979566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname));
67989566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &match));
67990fdc7489SMatthew Knepley     if (match) break;
68000fdc7489SMatthew Knepley   }
68013ba16761SJacob Faibussowitsch   if (m == l) PetscFunctionReturn(PETSC_SUCCESS);
68020fdc7489SMatthew Knepley   if (!m) dm->labels = orig->next;
68030fdc7489SMatthew Knepley   else prev->next = orig->next;
68040fdc7489SMatthew Knepley   if (!l) {
68050fdc7489SMatthew Knepley     orig->next = dm->labels;
68060fdc7489SMatthew Knepley     dm->labels = orig;
68070fdc7489SMatthew Knepley   } else {
6808fbccb6d4SPierre Jolivet     for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next);
68090fdc7489SMatthew Knepley     orig->next = prev->next;
68100fdc7489SMatthew Knepley     prev->next = orig;
68110fdc7489SMatthew Knepley   }
68123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
68130fdc7489SMatthew Knepley }
68140fdc7489SMatthew Knepley 
6815cc4c1da9SBarry Smith /*@
6816bb7acecfSBarry Smith   DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default
6817c58f1c22SToby Isaac 
6818c58f1c22SToby Isaac   Not Collective
6819c58f1c22SToby Isaac 
6820c58f1c22SToby Isaac   Input Parameters:
6821bb7acecfSBarry Smith + dm    - The `DM` object
6822c58f1c22SToby Isaac . name  - The label name
6823c58f1c22SToby Isaac - point - The mesh point
6824c58f1c22SToby Isaac 
6825c58f1c22SToby Isaac   Output Parameter:
6826c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label
6827c58f1c22SToby Isaac 
6828c58f1c22SToby Isaac   Level: beginner
6829c58f1c22SToby Isaac 
68301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6831c58f1c22SToby Isaac @*/
6832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value)
6833d71ae5a4SJacob Faibussowitsch {
6834c58f1c22SToby Isaac   DMLabel label;
6835c58f1c22SToby Isaac 
6836c58f1c22SToby Isaac   PetscFunctionBegin;
6837c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68384f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68399566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
68407a8be351SBarry Smith   PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name);
68419566063dSJacob Faibussowitsch   PetscCall(DMLabelGetValue(label, point, value));
68423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6843c58f1c22SToby Isaac }
6844c58f1c22SToby Isaac 
6845cc4c1da9SBarry Smith /*@
6846bb7acecfSBarry Smith   DMSetLabelValue - Add a point to a `DMLabel` with given value
6847c58f1c22SToby Isaac 
6848c58f1c22SToby Isaac   Not Collective
6849c58f1c22SToby Isaac 
6850c58f1c22SToby Isaac   Input Parameters:
6851bb7acecfSBarry Smith + dm    - The `DM` object
6852c58f1c22SToby Isaac . name  - The label name
6853c58f1c22SToby Isaac . point - The mesh point
6854c58f1c22SToby Isaac - value - The label value for this point
6855c58f1c22SToby Isaac 
6856c58f1c22SToby Isaac   Output Parameter:
6857c58f1c22SToby Isaac 
6858c58f1c22SToby Isaac   Level: beginner
6859c58f1c22SToby Isaac 
68601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
6861c58f1c22SToby Isaac @*/
6862d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6863d71ae5a4SJacob Faibussowitsch {
6864c58f1c22SToby Isaac   DMLabel label;
6865c58f1c22SToby Isaac 
6866c58f1c22SToby Isaac   PetscFunctionBegin;
6867c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68684f572ea9SToby Isaac   PetscAssertPointer(name, 2);
68699566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6870c58f1c22SToby Isaac   if (!label) {
68719566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
68729566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, &label));
6873c58f1c22SToby Isaac   }
68749566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(label, point, value));
68753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6876c58f1c22SToby Isaac }
6877c58f1c22SToby Isaac 
6878cc4c1da9SBarry Smith /*@
6879bb7acecfSBarry Smith   DMClearLabelValue - Remove a point from a `DMLabel` with given value
6880c58f1c22SToby Isaac 
6881c58f1c22SToby Isaac   Not Collective
6882c58f1c22SToby Isaac 
6883c58f1c22SToby Isaac   Input Parameters:
6884bb7acecfSBarry Smith + dm    - The `DM` object
6885c58f1c22SToby Isaac . name  - The label name
6886c58f1c22SToby Isaac . point - The mesh point
6887c58f1c22SToby Isaac - value - The label value for this point
6888c58f1c22SToby Isaac 
6889c58f1c22SToby Isaac   Level: beginner
6890c58f1c22SToby Isaac 
68911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
6892c58f1c22SToby Isaac @*/
6893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value)
6894d71ae5a4SJacob Faibussowitsch {
6895c58f1c22SToby Isaac   DMLabel label;
6896c58f1c22SToby Isaac 
6897c58f1c22SToby Isaac   PetscFunctionBegin;
6898c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
68994f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69009566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
69013ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69029566063dSJacob Faibussowitsch   PetscCall(DMLabelClearValue(label, point, value));
69033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6904c58f1c22SToby Isaac }
6905c58f1c22SToby Isaac 
6906cc4c1da9SBarry Smith /*@
6907bb7acecfSBarry Smith   DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM`
6908c58f1c22SToby Isaac 
6909c58f1c22SToby Isaac   Not Collective
6910c58f1c22SToby Isaac 
6911c58f1c22SToby Isaac   Input Parameters:
6912bb7acecfSBarry Smith + dm   - The `DM` object
6913c58f1c22SToby Isaac - name - The label name
6914c58f1c22SToby Isaac 
6915c58f1c22SToby Isaac   Output Parameter:
6916c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist
6917c58f1c22SToby Isaac 
6918c58f1c22SToby Isaac   Level: beginner
6919c58f1c22SToby Isaac 
692073ff1848SBarry Smith   Developer Note:
6921bb7acecfSBarry Smith   This should be renamed to something like `DMGetLabelNumValues()` or removed.
6922bb7acecfSBarry Smith 
69231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()`
6924c58f1c22SToby Isaac @*/
6925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size)
6926d71ae5a4SJacob Faibussowitsch {
6927c58f1c22SToby Isaac   DMLabel label;
6928c58f1c22SToby Isaac 
6929c58f1c22SToby Isaac   PetscFunctionBegin;
6930c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69314f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69324f572ea9SToby Isaac   PetscAssertPointer(size, 3);
69339566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6934c58f1c22SToby Isaac   *size = 0;
69353ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
69369566063dSJacob Faibussowitsch   PetscCall(DMLabelGetNumValues(label, size));
69373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6938c58f1c22SToby Isaac }
6939c58f1c22SToby Isaac 
6940cc4c1da9SBarry Smith /*@
6941bb7acecfSBarry Smith   DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM`
6942c58f1c22SToby Isaac 
6943c58f1c22SToby Isaac   Not Collective
6944c58f1c22SToby Isaac 
6945c58f1c22SToby Isaac   Input Parameters:
694660225df5SJacob Faibussowitsch + dm   - The `DM` object
6947c58f1c22SToby Isaac - name - The label name
6948c58f1c22SToby Isaac 
6949c58f1c22SToby Isaac   Output Parameter:
695020f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist
6951c58f1c22SToby Isaac 
6952c58f1c22SToby Isaac   Level: beginner
6953c58f1c22SToby Isaac 
69541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()`
6955c58f1c22SToby Isaac @*/
6956d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids)
6957d71ae5a4SJacob Faibussowitsch {
6958c58f1c22SToby Isaac   DMLabel label;
6959c58f1c22SToby Isaac 
6960c58f1c22SToby Isaac   PetscFunctionBegin;
6961c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69624f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69634f572ea9SToby Isaac   PetscAssertPointer(ids, 3);
69649566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
6965c58f1c22SToby Isaac   *ids = NULL;
6966dab2e251SBlaise Bourdin   if (label) {
69679566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, ids));
6968dab2e251SBlaise Bourdin   } else {
6969dab2e251SBlaise Bourdin     /* returning an empty IS */
69709566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids));
6971dab2e251SBlaise Bourdin   }
69723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6973c58f1c22SToby Isaac }
6974c58f1c22SToby Isaac 
6975cc4c1da9SBarry Smith /*@
6976c58f1c22SToby Isaac   DMGetStratumSize - Get the number of points in a label stratum
6977c58f1c22SToby Isaac 
6978c58f1c22SToby Isaac   Not Collective
6979c58f1c22SToby Isaac 
6980c58f1c22SToby Isaac   Input Parameters:
6981bb7acecfSBarry Smith + dm    - The `DM` object
6982b6971eaeSBarry Smith . name  - The label name of the stratum
6983c58f1c22SToby Isaac - value - The stratum value
6984c58f1c22SToby Isaac 
6985c58f1c22SToby Isaac   Output Parameter:
6986bb7acecfSBarry Smith . size - The number of points, also called the stratum size
6987c58f1c22SToby Isaac 
6988c58f1c22SToby Isaac   Level: beginner
6989c58f1c22SToby Isaac 
69901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()`
6991c58f1c22SToby Isaac @*/
6992d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size)
6993d71ae5a4SJacob Faibussowitsch {
6994c58f1c22SToby Isaac   DMLabel label;
6995c58f1c22SToby Isaac 
6996c58f1c22SToby Isaac   PetscFunctionBegin;
6997c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
69984f572ea9SToby Isaac   PetscAssertPointer(name, 2);
69994f572ea9SToby Isaac   PetscAssertPointer(size, 4);
70009566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
7001c58f1c22SToby Isaac   *size = 0;
70023ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70039566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumSize(label, value, size));
70043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7005c58f1c22SToby Isaac }
7006c58f1c22SToby Isaac 
7007cc4c1da9SBarry Smith /*@
7008c58f1c22SToby Isaac   DMGetStratumIS - Get the points in a label stratum
7009c58f1c22SToby Isaac 
7010c58f1c22SToby Isaac   Not Collective
7011c58f1c22SToby Isaac 
7012c58f1c22SToby Isaac   Input Parameters:
7013bb7acecfSBarry Smith + dm    - The `DM` object
7014c58f1c22SToby Isaac . name  - The label name
7015c58f1c22SToby Isaac - value - The stratum value
7016c58f1c22SToby Isaac 
7017c58f1c22SToby Isaac   Output Parameter:
701820f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value
7019c58f1c22SToby Isaac 
7020c58f1c22SToby Isaac   Level: beginner
7021c58f1c22SToby Isaac 
70221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()`
7023c58f1c22SToby Isaac @*/
7024d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points)
7025d71ae5a4SJacob Faibussowitsch {
7026c58f1c22SToby Isaac   DMLabel label;
7027c58f1c22SToby Isaac 
7028c58f1c22SToby Isaac   PetscFunctionBegin;
7029c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70304f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70314f572ea9SToby Isaac   PetscAssertPointer(points, 4);
70329566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
7033c58f1c22SToby Isaac   *points = NULL;
70343ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70359566063dSJacob Faibussowitsch   PetscCall(DMLabelGetStratumIS(label, value, points));
70363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7037c58f1c22SToby Isaac }
7038c58f1c22SToby Isaac 
7039cc4c1da9SBarry Smith /*@
70409044fa66SMatthew G. Knepley   DMSetStratumIS - Set the points in a label stratum
70414de306b1SToby Isaac 
70424de306b1SToby Isaac   Not Collective
70434de306b1SToby Isaac 
70444de306b1SToby Isaac   Input Parameters:
7045bb7acecfSBarry Smith + dm     - The `DM` object
70464de306b1SToby Isaac . name   - The label name
70474de306b1SToby Isaac . value  - The stratum value
70484de306b1SToby Isaac - points - The stratum points
70494de306b1SToby Isaac 
70504de306b1SToby Isaac   Level: beginner
70514de306b1SToby Isaac 
70521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()`
70534de306b1SToby Isaac @*/
7054d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points)
7055d71ae5a4SJacob Faibussowitsch {
70564de306b1SToby Isaac   DMLabel label;
70574de306b1SToby Isaac 
70584de306b1SToby Isaac   PetscFunctionBegin;
70594de306b1SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70604f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7061292bffcbSToby Isaac   PetscValidHeaderSpecific(points, IS_CLASSID, 4);
70629566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70633ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70649566063dSJacob Faibussowitsch   PetscCall(DMLabelSetStratumIS(label, value, points));
70653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70664de306b1SToby Isaac }
70674de306b1SToby Isaac 
7068cc4c1da9SBarry Smith /*@
7069bb7acecfSBarry Smith   DMClearLabelStratum - Remove all points from a stratum from a `DMLabel`
7070c58f1c22SToby Isaac 
7071c58f1c22SToby Isaac   Not Collective
7072c58f1c22SToby Isaac 
7073c58f1c22SToby Isaac   Input Parameters:
7074bb7acecfSBarry Smith + dm    - The `DM` object
7075c58f1c22SToby Isaac . name  - The label name
7076c58f1c22SToby Isaac - value - The label value for this point
7077c58f1c22SToby Isaac 
7078c58f1c22SToby Isaac   Output Parameter:
7079c58f1c22SToby Isaac 
7080c58f1c22SToby Isaac   Level: beginner
7081c58f1c22SToby Isaac 
70821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()`
7083c58f1c22SToby Isaac @*/
7084d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value)
7085d71ae5a4SJacob Faibussowitsch {
7086c58f1c22SToby Isaac   DMLabel label;
7087c58f1c22SToby Isaac 
7088c58f1c22SToby Isaac   PetscFunctionBegin;
7089c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
70904f572ea9SToby Isaac   PetscAssertPointer(name, 2);
70919566063dSJacob Faibussowitsch   PetscCall(DMGetLabel(dm, name, &label));
70923ba16761SJacob Faibussowitsch   if (!label) PetscFunctionReturn(PETSC_SUCCESS);
70939566063dSJacob Faibussowitsch   PetscCall(DMLabelClearStratum(label, value));
70943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7095c58f1c22SToby Isaac }
7096c58f1c22SToby Isaac 
7097c58f1c22SToby Isaac /*@
7098bb7acecfSBarry Smith   DMGetNumLabels - Return the number of labels defined by on the `DM`
7099c58f1c22SToby Isaac 
7100c58f1c22SToby Isaac   Not Collective
7101c58f1c22SToby Isaac 
7102c58f1c22SToby Isaac   Input Parameter:
7103bb7acecfSBarry Smith . dm - The `DM` object
7104c58f1c22SToby Isaac 
7105c58f1c22SToby Isaac   Output Parameter:
7106c58f1c22SToby Isaac . numLabels - the number of Labels
7107c58f1c22SToby Isaac 
7108c58f1c22SToby Isaac   Level: intermediate
7109c58f1c22SToby Isaac 
71101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7111c58f1c22SToby Isaac @*/
7112d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels)
7113d71ae5a4SJacob Faibussowitsch {
71145d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7115c58f1c22SToby Isaac   PetscInt    n    = 0;
7116c58f1c22SToby Isaac 
7117c58f1c22SToby Isaac   PetscFunctionBegin;
7118c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71194f572ea9SToby Isaac   PetscAssertPointer(numLabels, 2);
71209371c9d4SSatish Balay   while (next) {
71219371c9d4SSatish Balay     ++n;
71229371c9d4SSatish Balay     next = next->next;
71239371c9d4SSatish Balay   }
7124c58f1c22SToby Isaac   *numLabels = n;
71253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7126c58f1c22SToby Isaac }
7127c58f1c22SToby Isaac 
7128cc4c1da9SBarry Smith /*@
7129c58f1c22SToby Isaac   DMGetLabelName - Return the name of nth label
7130c58f1c22SToby Isaac 
7131c58f1c22SToby Isaac   Not Collective
7132c58f1c22SToby Isaac 
7133c58f1c22SToby Isaac   Input Parameters:
7134bb7acecfSBarry Smith + dm - The `DM` object
7135c58f1c22SToby Isaac - n  - the label number
7136c58f1c22SToby Isaac 
7137c58f1c22SToby Isaac   Output Parameter:
7138c58f1c22SToby Isaac . name - the label name
7139c58f1c22SToby Isaac 
7140c58f1c22SToby Isaac   Level: intermediate
7141c58f1c22SToby Isaac 
714273ff1848SBarry Smith   Developer Note:
7143bb7acecfSBarry Smith   Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not.
7144bb7acecfSBarry Smith 
71451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7146c58f1c22SToby Isaac @*/
7147cc4c1da9SBarry Smith PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char *name[])
7148d71ae5a4SJacob Faibussowitsch {
71495d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7150c58f1c22SToby Isaac   PetscInt    l    = 0;
7151c58f1c22SToby Isaac 
7152c58f1c22SToby Isaac   PetscFunctionBegin;
7153c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71544f572ea9SToby Isaac   PetscAssertPointer(name, 3);
7155c58f1c22SToby Isaac   while (next) {
7156c58f1c22SToby Isaac     if (l == n) {
71579566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)next->label, name));
71583ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7159c58f1c22SToby Isaac     }
7160c58f1c22SToby Isaac     ++l;
7161c58f1c22SToby Isaac     next = next->next;
7162c58f1c22SToby Isaac   }
716363a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7164c58f1c22SToby Isaac }
7165c58f1c22SToby Isaac 
7166cc4c1da9SBarry Smith /*@
7167bb7acecfSBarry Smith   DMHasLabel - Determine whether the `DM` has a label of a given name
7168c58f1c22SToby Isaac 
7169c58f1c22SToby Isaac   Not Collective
7170c58f1c22SToby Isaac 
7171c58f1c22SToby Isaac   Input Parameters:
7172bb7acecfSBarry Smith + dm   - The `DM` object
7173c58f1c22SToby Isaac - name - The label name
7174c58f1c22SToby Isaac 
7175c58f1c22SToby Isaac   Output Parameter:
7176bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present
7177c58f1c22SToby Isaac 
7178c58f1c22SToby Isaac   Level: intermediate
7179c58f1c22SToby Isaac 
71801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7181c58f1c22SToby Isaac @*/
7182d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel)
7183d71ae5a4SJacob Faibussowitsch {
71845d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7185d67d17b1SMatthew G. Knepley   const char *lname;
7186c58f1c22SToby Isaac 
7187c58f1c22SToby Isaac   PetscFunctionBegin;
7188c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
71894f572ea9SToby Isaac   PetscAssertPointer(name, 2);
71904f572ea9SToby Isaac   PetscAssertPointer(hasLabel, 3);
7191c58f1c22SToby Isaac   *hasLabel = PETSC_FALSE;
7192c58f1c22SToby Isaac   while (next) {
71939566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
71949566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, hasLabel));
7195c58f1c22SToby Isaac     if (*hasLabel) break;
7196c58f1c22SToby Isaac     next = next->next;
7197c58f1c22SToby Isaac   }
71983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7199c58f1c22SToby Isaac }
7200c58f1c22SToby Isaac 
7201a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7202cc4c1da9SBarry Smith /*@
720320f4b53cSBarry Smith   DMGetLabel - Return the label of a given name, or `NULL`, from a `DM`
7204c58f1c22SToby Isaac 
7205c58f1c22SToby Isaac   Not Collective
7206c58f1c22SToby Isaac 
7207c58f1c22SToby Isaac   Input Parameters:
7208bb7acecfSBarry Smith + dm   - The `DM` object
7209c58f1c22SToby Isaac - name - The label name
7210c58f1c22SToby Isaac 
7211c58f1c22SToby Isaac   Output Parameter:
721220f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent
7213c58f1c22SToby Isaac 
7214bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7215bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7216bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7217bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7218bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7219bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7220bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
72216d7c9049SMatthew G. Knepley 
7222c58f1c22SToby Isaac   Level: intermediate
7223c58f1c22SToby Isaac 
722460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
7225c58f1c22SToby Isaac @*/
7226d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label)
7227d71ae5a4SJacob Faibussowitsch {
72285d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7229c58f1c22SToby Isaac   PetscBool   hasLabel;
7230d67d17b1SMatthew G. Knepley   const char *lname;
7231c58f1c22SToby Isaac 
7232c58f1c22SToby Isaac   PetscFunctionBegin;
7233c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72344f572ea9SToby Isaac   PetscAssertPointer(name, 2);
72354f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7236c58f1c22SToby Isaac   *label = NULL;
7237c58f1c22SToby Isaac   while (next) {
72389566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
72399566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7240c58f1c22SToby Isaac     if (hasLabel) {
7241c58f1c22SToby Isaac       *label = next->label;
7242c58f1c22SToby Isaac       break;
7243c58f1c22SToby Isaac     }
7244c58f1c22SToby Isaac     next = next->next;
7245c58f1c22SToby Isaac   }
72463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7247c58f1c22SToby Isaac }
7248c58f1c22SToby Isaac 
7249cc4c1da9SBarry Smith /*@
7250bb7acecfSBarry Smith   DMGetLabelByNum - Return the nth label on a `DM`
7251c58f1c22SToby Isaac 
7252c58f1c22SToby Isaac   Not Collective
7253c58f1c22SToby Isaac 
7254c58f1c22SToby Isaac   Input Parameters:
7255bb7acecfSBarry Smith + dm - The `DM` object
7256c58f1c22SToby Isaac - n  - the label number
7257c58f1c22SToby Isaac 
7258c58f1c22SToby Isaac   Output Parameter:
7259c58f1c22SToby Isaac . label - the label
7260c58f1c22SToby Isaac 
7261c58f1c22SToby Isaac   Level: intermediate
7262c58f1c22SToby Isaac 
72631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7264c58f1c22SToby Isaac @*/
7265d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label)
7266d71ae5a4SJacob Faibussowitsch {
72675d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7268c58f1c22SToby Isaac   PetscInt    l    = 0;
7269c58f1c22SToby Isaac 
7270c58f1c22SToby Isaac   PetscFunctionBegin;
7271c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
72724f572ea9SToby Isaac   PetscAssertPointer(label, 3);
7273c58f1c22SToby Isaac   while (next) {
7274c58f1c22SToby Isaac     if (l == n) {
7275c58f1c22SToby Isaac       *label = next->label;
72763ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
7277c58f1c22SToby Isaac     }
7278c58f1c22SToby Isaac     ++l;
7279c58f1c22SToby Isaac     next = next->next;
7280c58f1c22SToby Isaac   }
728163a3b9bcSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n);
7282c58f1c22SToby Isaac }
7283c58f1c22SToby Isaac 
7284cc4c1da9SBarry Smith /*@
7285bb7acecfSBarry Smith   DMAddLabel - Add the label to this `DM`
7286c58f1c22SToby Isaac 
7287c58f1c22SToby Isaac   Not Collective
7288c58f1c22SToby Isaac 
7289c58f1c22SToby Isaac   Input Parameters:
7290bb7acecfSBarry Smith + dm    - The `DM` object
7291bb7acecfSBarry Smith - label - The `DMLabel`
7292c58f1c22SToby Isaac 
7293c58f1c22SToby Isaac   Level: developer
7294c58f1c22SToby Isaac 
729560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7296c58f1c22SToby Isaac @*/
7297d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label)
7298d71ae5a4SJacob Faibussowitsch {
72995d80c0bfSVaclav Hapla   DMLabelLink l, *p, tmpLabel;
7300c58f1c22SToby Isaac   PetscBool   hasLabel;
7301d67d17b1SMatthew G. Knepley   const char *lname;
73025d80c0bfSVaclav Hapla   PetscBool   flg;
7303c58f1c22SToby Isaac 
7304c58f1c22SToby Isaac   PetscFunctionBegin;
7305c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &lname));
73079566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, lname, &hasLabel));
73087a8be351SBarry Smith   PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname);
73099566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1, &tmpLabel));
7310c58f1c22SToby Isaac   tmpLabel->label  = label;
7311c58f1c22SToby Isaac   tmpLabel->output = PETSC_TRUE;
73125d80c0bfSVaclav Hapla   for (p = &dm->labels; (l = *p); p = &l->next) { }
73135d80c0bfSVaclav Hapla   *p = tmpLabel;
73149566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)label));
73159566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "depth", &flg));
73165d80c0bfSVaclav Hapla   if (flg) dm->depthLabel = label;
73179566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(lname, "celltype", &flg));
7318ba2698f1SMatthew G. Knepley   if (flg) dm->celltypeLabel = label;
73193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7320c58f1c22SToby Isaac }
7321c58f1c22SToby Isaac 
7322a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown
7323cc4c1da9SBarry Smith /*@
73244a7ee7d0SMatthew G. Knepley   DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present
73254a7ee7d0SMatthew G. Knepley 
73264a7ee7d0SMatthew G. Knepley   Not Collective
73274a7ee7d0SMatthew G. Knepley 
73284a7ee7d0SMatthew G. Knepley   Input Parameters:
7329bb7acecfSBarry Smith + dm    - The `DM` object
7330bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute
73314a7ee7d0SMatthew G. Knepley 
7332bb7acecfSBarry Smith   Default labels in a `DMPLEX`:
7333bb7acecfSBarry Smith + "depth"       - Holds the depth (co-dimension) of each mesh point
7334bb7acecfSBarry Smith . "celltype"    - Holds the topological type of each cell
7335bb7acecfSBarry Smith . "ghost"       - If the DM is distributed with overlap, this marks the cells and faces in the overlap
7336bb7acecfSBarry Smith . "Cell Sets"   - Mirrors the cell sets defined by GMsh and ExodusII
7337bb7acecfSBarry Smith . "Face Sets"   - Mirrors the face sets defined by GMsh and ExodusII
7338bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh
73394a7ee7d0SMatthew G. Knepley 
73404a7ee7d0SMatthew G. Knepley   Level: intermediate
73414a7ee7d0SMatthew G. Knepley 
73421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()`
73434a7ee7d0SMatthew G. Knepley @*/
7344d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label)
7345d71ae5a4SJacob Faibussowitsch {
73464a7ee7d0SMatthew G. Knepley   DMLabelLink next = dm->labels;
73474a7ee7d0SMatthew G. Knepley   PetscBool   hasLabel, flg;
73484a7ee7d0SMatthew G. Knepley   const char *name, *lname;
73494a7ee7d0SMatthew G. Knepley 
73504a7ee7d0SMatthew G. Knepley   PetscFunctionBegin;
73514a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73524a7ee7d0SMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
73539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetName((PetscObject)label, &name));
73544a7ee7d0SMatthew G. Knepley   while (next) {
73559566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
73569566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
73574a7ee7d0SMatthew G. Knepley     if (hasLabel) {
73589566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)label));
73599566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "depth", &flg));
73604a7ee7d0SMatthew G. Knepley       if (flg) dm->depthLabel = label;
73619566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(lname, "celltype", &flg));
73624a7ee7d0SMatthew G. Knepley       if (flg) dm->celltypeLabel = label;
73639566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&next->label));
73644a7ee7d0SMatthew G. Knepley       next->label = label;
73654a7ee7d0SMatthew G. Knepley       break;
73664a7ee7d0SMatthew G. Knepley     }
73674a7ee7d0SMatthew G. Knepley     next = next->next;
73684a7ee7d0SMatthew G. Knepley   }
73693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73704a7ee7d0SMatthew G. Knepley }
73714a7ee7d0SMatthew G. Knepley 
7372cc4c1da9SBarry Smith /*@
7373bb7acecfSBarry Smith   DMRemoveLabel - Remove the label given by name from this `DM`
7374c58f1c22SToby Isaac 
7375c58f1c22SToby Isaac   Not Collective
7376c58f1c22SToby Isaac 
7377c58f1c22SToby Isaac   Input Parameters:
7378bb7acecfSBarry Smith + dm   - The `DM` object
7379c58f1c22SToby Isaac - name - The label name
7380c58f1c22SToby Isaac 
7381c58f1c22SToby Isaac   Output Parameter:
738220f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the
7383bb7acecfSBarry Smith           caller is responsible for calling `DMLabelDestroy()`.
7384c58f1c22SToby Isaac 
7385c58f1c22SToby Isaac   Level: developer
7386c58f1c22SToby Isaac 
73871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()`
7388c58f1c22SToby Isaac @*/
7389d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label)
7390d71ae5a4SJacob Faibussowitsch {
739195d578d6SVaclav Hapla   DMLabelLink link, *pnext;
7392c58f1c22SToby Isaac   PetscBool   hasLabel;
7393d67d17b1SMatthew G. Knepley   const char *lname;
7394c58f1c22SToby Isaac 
7395c58f1c22SToby Isaac   PetscFunctionBegin;
7396c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
73974f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7398e5472504SVaclav Hapla   if (label) {
73994f572ea9SToby Isaac     PetscAssertPointer(label, 3);
7400c58f1c22SToby Isaac     *label = NULL;
7401e5472504SVaclav Hapla   }
74025d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
74039566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)link->label, &lname));
74049566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &hasLabel));
7405c58f1c22SToby Isaac     if (hasLabel) {
740695d578d6SVaclav Hapla       *pnext = link->next; /* Remove from list */
74079566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &hasLabel));
740895d578d6SVaclav Hapla       if (hasLabel) dm->depthLabel = NULL;
74099566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &hasLabel));
7410ba2698f1SMatthew G. Knepley       if (hasLabel) dm->celltypeLabel = NULL;
741195d578d6SVaclav Hapla       if (label) *label = link->label;
74129566063dSJacob Faibussowitsch       else PetscCall(DMLabelDestroy(&link->label));
74139566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7414c58f1c22SToby Isaac       break;
7415c58f1c22SToby Isaac     }
7416c58f1c22SToby Isaac   }
74173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7418c58f1c22SToby Isaac }
7419c58f1c22SToby Isaac 
7420306894acSVaclav Hapla /*@
7421bb7acecfSBarry Smith   DMRemoveLabelBySelf - Remove the label from this `DM`
7422306894acSVaclav Hapla 
7423306894acSVaclav Hapla   Not Collective
7424306894acSVaclav Hapla 
7425306894acSVaclav Hapla   Input Parameters:
7426bb7acecfSBarry Smith + dm           - The `DM` object
7427bb7acecfSBarry Smith . label        - The `DMLabel` to be removed from the `DM`
742820f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`?
7429306894acSVaclav Hapla 
7430306894acSVaclav Hapla   Level: developer
7431306894acSVaclav Hapla 
7432bb7acecfSBarry Smith   Note:
7433306894acSVaclav Hapla   Only exactly the same instance is removed if found, name match is ignored.
7434bb7acecfSBarry Smith   If the `DM` has an exclusive reference to the label, the label gets destroyed and
7435306894acSVaclav Hapla   *label nullified.
7436306894acSVaclav Hapla 
74371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()`
7438306894acSVaclav Hapla @*/
7439d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound)
7440d71ae5a4SJacob Faibussowitsch {
744143e45a93SVaclav Hapla   DMLabelLink link, *pnext;
7442306894acSVaclav Hapla   PetscBool   hasLabel = PETSC_FALSE;
7443306894acSVaclav Hapla 
7444306894acSVaclav Hapla   PetscFunctionBegin;
7445306894acSVaclav Hapla   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74464f572ea9SToby Isaac   PetscAssertPointer(label, 2);
74473ba16761SJacob Faibussowitsch   if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS);
7448306894acSVaclav Hapla   PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2);
7449306894acSVaclav Hapla   PetscValidLogicalCollectiveBool(dm, failNotFound, 3);
74505d80c0bfSVaclav Hapla   for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) {
745143e45a93SVaclav Hapla     if (*label == link->label) {
7452306894acSVaclav Hapla       hasLabel = PETSC_TRUE;
745343e45a93SVaclav Hapla       *pnext   = link->next; /* Remove from list */
7454306894acSVaclav Hapla       if (*label == dm->depthLabel) dm->depthLabel = NULL;
7455ba2698f1SMatthew G. Knepley       if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL;
745643e45a93SVaclav Hapla       if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */
74579566063dSJacob Faibussowitsch       PetscCall(DMLabelDestroy(&link->label));
74589566063dSJacob Faibussowitsch       PetscCall(PetscFree(link));
7459306894acSVaclav Hapla       break;
7460306894acSVaclav Hapla     }
7461306894acSVaclav Hapla   }
74627a8be351SBarry Smith   PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM");
74633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7464306894acSVaclav Hapla }
7465306894acSVaclav Hapla 
7466cc4c1da9SBarry Smith /*@
7467c58f1c22SToby Isaac   DMGetLabelOutput - Get the output flag for a given label
7468c58f1c22SToby Isaac 
7469c58f1c22SToby Isaac   Not Collective
7470c58f1c22SToby Isaac 
7471c58f1c22SToby Isaac   Input Parameters:
7472bb7acecfSBarry Smith + dm   - The `DM` object
7473c58f1c22SToby Isaac - name - The label name
7474c58f1c22SToby Isaac 
7475c58f1c22SToby Isaac   Output Parameter:
7476c58f1c22SToby Isaac . output - The flag for output
7477c58f1c22SToby Isaac 
7478c58f1c22SToby Isaac   Level: developer
7479c58f1c22SToby Isaac 
74801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7481c58f1c22SToby Isaac @*/
7482d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output)
7483d71ae5a4SJacob Faibussowitsch {
74845d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7485d67d17b1SMatthew G. Knepley   const char *lname;
7486c58f1c22SToby Isaac 
7487c58f1c22SToby Isaac   PetscFunctionBegin;
7488c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
74894f572ea9SToby Isaac   PetscAssertPointer(name, 2);
74904f572ea9SToby Isaac   PetscAssertPointer(output, 3);
7491c58f1c22SToby Isaac   while (next) {
7492c58f1c22SToby Isaac     PetscBool flg;
7493c58f1c22SToby Isaac 
74949566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
74959566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
74969371c9d4SSatish Balay     if (flg) {
74979371c9d4SSatish Balay       *output = next->output;
74983ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
74999371c9d4SSatish Balay     }
7500c58f1c22SToby Isaac     next = next->next;
7501c58f1c22SToby Isaac   }
750298921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7503c58f1c22SToby Isaac }
7504c58f1c22SToby Isaac 
7505cc4c1da9SBarry Smith /*@
7506bb7acecfSBarry Smith   DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()`
7507c58f1c22SToby Isaac 
7508c58f1c22SToby Isaac   Not Collective
7509c58f1c22SToby Isaac 
7510c58f1c22SToby Isaac   Input Parameters:
7511bb7acecfSBarry Smith + dm     - The `DM` object
7512c58f1c22SToby Isaac . name   - The label name
7513bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer
7514c58f1c22SToby Isaac 
7515c58f1c22SToby Isaac   Level: developer
7516c58f1c22SToby Isaac 
75171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()`
7518c58f1c22SToby Isaac @*/
7519d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output)
7520d71ae5a4SJacob Faibussowitsch {
75215d80c0bfSVaclav Hapla   DMLabelLink next = dm->labels;
7522d67d17b1SMatthew G. Knepley   const char *lname;
7523c58f1c22SToby Isaac 
7524c58f1c22SToby Isaac   PetscFunctionBegin;
7525c58f1c22SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
75264f572ea9SToby Isaac   PetscAssertPointer(name, 2);
7527c58f1c22SToby Isaac   while (next) {
7528c58f1c22SToby Isaac     PetscBool flg;
7529c58f1c22SToby Isaac 
75309566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)next->label, &lname));
75319566063dSJacob Faibussowitsch     PetscCall(PetscStrcmp(name, lname, &flg));
75329371c9d4SSatish Balay     if (flg) {
75339371c9d4SSatish Balay       next->output = output;
75343ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
75359371c9d4SSatish Balay     }
7536c58f1c22SToby Isaac     next = next->next;
7537c58f1c22SToby Isaac   }
753898921bdaSJacob Faibussowitsch   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name);
7539c58f1c22SToby Isaac }
7540c58f1c22SToby Isaac 
7541c58f1c22SToby Isaac /*@
7542bb7acecfSBarry Smith   DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points
7543c58f1c22SToby Isaac 
754420f4b53cSBarry Smith   Collective
7545c58f1c22SToby Isaac 
7546d8d19677SJose E. Roman   Input Parameters:
7547bb7acecfSBarry Smith + dmA   - The `DM` object with initial labels
7548bb7acecfSBarry Smith . dmB   - The `DM` object to which labels are copied
7549bb7acecfSBarry Smith . mode  - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`)
7550bb7acecfSBarry Smith . all   - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`)
7551bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`)
7552c58f1c22SToby Isaac 
7553c58f1c22SToby Isaac   Level: intermediate
7554c58f1c22SToby Isaac 
7555bb7acecfSBarry Smith   Note:
75562cbb9b06SVaclav Hapla   This is typically used when interpolating or otherwise adding to a mesh, or testing.
7557c58f1c22SToby Isaac 
75581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`
7559c58f1c22SToby Isaac @*/
7560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode)
7561d71ae5a4SJacob Faibussowitsch {
75622cbb9b06SVaclav Hapla   DMLabel     label, labelNew, labelOld;
7563c58f1c22SToby Isaac   const char *name;
7564c58f1c22SToby Isaac   PetscBool   flg;
75655d80c0bfSVaclav Hapla   DMLabelLink link;
7566c58f1c22SToby Isaac 
75675d80c0bfSVaclav Hapla   PetscFunctionBegin;
75685d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmA, DM_CLASSID, 1);
75695d80c0bfSVaclav Hapla   PetscValidHeaderSpecific(dmB, DM_CLASSID, 2);
75705d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveEnum(dmA, mode, 3);
75715d80c0bfSVaclav Hapla   PetscValidLogicalCollectiveBool(dmA, all, 4);
75727a8be351SBarry Smith   PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects");
75733ba16761SJacob Faibussowitsch   if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS);
75745d80c0bfSVaclav Hapla   for (link = dmA->labels; link; link = link->next) {
75755d80c0bfSVaclav Hapla     label = link->label;
75769566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)label, &name));
75775d80c0bfSVaclav Hapla     if (!all) {
75789566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "depth", &flg));
7579c58f1c22SToby Isaac       if (flg) continue;
75809566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "dim", &flg));
75817d5acc75SStefano Zampini       if (flg) continue;
75829566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, "celltype", &flg));
7583ba2698f1SMatthew G. Knepley       if (flg) continue;
75845d80c0bfSVaclav Hapla     }
75859566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dmB, name, &labelOld));
75862cbb9b06SVaclav Hapla     if (labelOld) {
75872cbb9b06SVaclav Hapla       switch (emode) {
7588d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_KEEP:
7589d71ae5a4SJacob Faibussowitsch         continue;
7590d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_REPLACE:
7591d71ae5a4SJacob Faibussowitsch         PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE));
7592d71ae5a4SJacob Faibussowitsch         break;
7593d71ae5a4SJacob Faibussowitsch       case DM_COPY_LABELS_FAIL:
7594d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name);
7595d71ae5a4SJacob Faibussowitsch       default:
7596d71ae5a4SJacob Faibussowitsch         SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode);
75972cbb9b06SVaclav Hapla       }
75982cbb9b06SVaclav Hapla     }
75995d80c0bfSVaclav Hapla     if (mode == PETSC_COPY_VALUES) {
76009566063dSJacob Faibussowitsch       PetscCall(DMLabelDuplicate(label, &labelNew));
76015d80c0bfSVaclav Hapla     } else {
76025d80c0bfSVaclav Hapla       labelNew = label;
76035d80c0bfSVaclav Hapla     }
76049566063dSJacob Faibussowitsch     PetscCall(DMAddLabel(dmB, labelNew));
76059566063dSJacob Faibussowitsch     if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew));
7606c58f1c22SToby Isaac   }
76073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7608c58f1c22SToby Isaac }
7609461a15a0SLisandro Dalcin 
7610609dae6eSVaclav Hapla /*@C
7611b4028c23SStefano Zampini   DMCompareLabels - Compare labels between two `DM` objects
7612609dae6eSVaclav Hapla 
761320f4b53cSBarry Smith   Collective; No Fortran Support
7614609dae6eSVaclav Hapla 
7615609dae6eSVaclav Hapla   Input Parameters:
7616bb7acecfSBarry Smith + dm0 - First `DM` object
7617bb7acecfSBarry Smith - dm1 - Second `DM` object
7618609dae6eSVaclav Hapla 
7619a4e35b19SJacob Faibussowitsch   Output Parameters:
7620ce78bad3SBarry Smith + equal   - (Optional) Flag whether labels of `dm0` and `dm1` are the same
762120f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference
7622609dae6eSVaclav Hapla 
7623609dae6eSVaclav Hapla   Level: intermediate
7624609dae6eSVaclav Hapla 
7625609dae6eSVaclav Hapla   Notes:
7626bb7acecfSBarry Smith   The output flag equal will be the same on all processes.
7627bb7acecfSBarry Smith 
762820f4b53cSBarry Smith   If equal is passed as `NULL` and difference is found, an error is thrown on all processes.
7629bb7acecfSBarry Smith 
763020f4b53cSBarry Smith   Make sure to pass equal is `NULL` on all processes or none of them.
7631609dae6eSVaclav Hapla 
76325efe38ccSVaclav Hapla   The output message is set independently on each rank.
7633bb7acecfSBarry Smith 
7634bb7acecfSBarry Smith   message must be freed with `PetscFree()`
7635bb7acecfSBarry Smith 
7636ce78bad3SBarry Smith   If message is passed as `NULL` and a difference is found, the difference description is printed to `stderr` in synchronized manner.
7637bb7acecfSBarry Smith 
763820f4b53cSBarry Smith   Make sure to pass message as `NULL` on all processes or no processes.
7639609dae6eSVaclav Hapla 
7640609dae6eSVaclav Hapla   Labels are matched by name. If the number of labels and their names are equal,
7641bb7acecfSBarry Smith   `DMLabelCompare()` is used to compare each pair of labels with the same name.
7642609dae6eSVaclav Hapla 
7643cc4c1da9SBarry Smith   Developer Note:
7644ce78bad3SBarry Smith   Cannot automatically generate the Fortran stub because `message` must be freed with `PetscFree()`
7645cc4c1da9SBarry Smith 
76461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()`
7647609dae6eSVaclav Hapla @*/
7648ce78bad3SBarry Smith PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char *message[]) PeNS
7649d71ae5a4SJacob Faibussowitsch {
76505efe38ccSVaclav Hapla   PetscInt    n, i;
7651609dae6eSVaclav Hapla   char        msg[PETSC_MAX_PATH_LEN] = "";
76525efe38ccSVaclav Hapla   PetscBool   eq;
7653609dae6eSVaclav Hapla   MPI_Comm    comm;
76545efe38ccSVaclav Hapla   PetscMPIInt rank;
7655609dae6eSVaclav Hapla 
7656609dae6eSVaclav Hapla   PetscFunctionBegin;
7657609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm0, DM_CLASSID, 1);
7658609dae6eSVaclav Hapla   PetscValidHeaderSpecific(dm1, DM_CLASSID, 2);
7659609dae6eSVaclav Hapla   PetscCheckSameComm(dm0, 1, dm1, 2);
76604f572ea9SToby Isaac   if (equal) PetscAssertPointer(equal, 3);
76614f572ea9SToby Isaac   if (message) PetscAssertPointer(message, 4);
76629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm));
76639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
76645efe38ccSVaclav Hapla   {
76655efe38ccSVaclav Hapla     PetscInt n1;
76665efe38ccSVaclav Hapla 
76679566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm0, &n));
76689566063dSJacob Faibussowitsch     PetscCall(DMGetNumLabels(dm1, &n1));
76695efe38ccSVaclav Hapla     eq = (PetscBool)(n == n1);
767048a46eb9SPierre Jolivet     if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1));
7671462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
76725efe38ccSVaclav Hapla     if (!eq) goto finish;
76735efe38ccSVaclav Hapla   }
76745efe38ccSVaclav Hapla   for (i = 0; i < n; i++) {
7675609dae6eSVaclav Hapla     DMLabel     l0, l1;
7676609dae6eSVaclav Hapla     const char *name;
7677609dae6eSVaclav Hapla     char       *msgInner;
7678609dae6eSVaclav Hapla 
7679609dae6eSVaclav Hapla     /* Ignore label order */
76809566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm0, i, &l0));
76819566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)l0, &name));
76829566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm1, name, &l1));
7683609dae6eSVaclav Hapla     if (!l1) {
768463a3b9bcSJacob Faibussowitsch       PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i));
76855efe38ccSVaclav Hapla       eq = PETSC_FALSE;
76865efe38ccSVaclav Hapla       break;
7687609dae6eSVaclav Hapla     }
76889566063dSJacob Faibussowitsch     PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner));
76899566063dSJacob Faibussowitsch     PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg)));
76909566063dSJacob Faibussowitsch     PetscCall(PetscFree(msgInner));
76915efe38ccSVaclav Hapla     if (!eq) break;
7692609dae6eSVaclav Hapla   }
7693462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm));
7694609dae6eSVaclav Hapla finish:
76955efe38ccSVaclav Hapla   /* If message output arg not set, print to stderr */
7696609dae6eSVaclav Hapla   if (message) {
7697609dae6eSVaclav Hapla     *message = NULL;
769848a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscStrallocpy(msg, message));
76995efe38ccSVaclav Hapla   } else {
770048a46eb9SPierre Jolivet     if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg));
77019566063dSJacob Faibussowitsch     PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR));
77025efe38ccSVaclav Hapla   }
77035efe38ccSVaclav Hapla   /* If same output arg not ser and labels are not equal, throw error */
77045efe38ccSVaclav Hapla   if (equal) *equal = eq;
77057a8be351SBarry Smith   else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1");
77063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7707609dae6eSVaclav Hapla }
7708609dae6eSVaclav Hapla 
7709d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value)
7710d71ae5a4SJacob Faibussowitsch {
7711461a15a0SLisandro Dalcin   PetscFunctionBegin;
77124f572ea9SToby Isaac   PetscAssertPointer(label, 2);
7713461a15a0SLisandro Dalcin   if (!*label) {
77149566063dSJacob Faibussowitsch     PetscCall(DMCreateLabel(dm, name));
77159566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, name, label));
7716461a15a0SLisandro Dalcin   }
77179566063dSJacob Faibussowitsch   PetscCall(DMLabelSetValue(*label, point, value));
77183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7719461a15a0SLisandro Dalcin }
7720461a15a0SLisandro Dalcin 
77210fdc7489SMatthew Knepley /*
77220fdc7489SMatthew Knepley   Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would
77230fdc7489SMatthew Knepley   like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every
77240fdc7489SMatthew Knepley   (label, id) pair in the DM.
77250fdc7489SMatthew Knepley 
77260fdc7489SMatthew Knepley   However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to
77270fdc7489SMatthew Knepley   each label.
77280fdc7489SMatthew Knepley */
7729d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal)
7730d71ae5a4SJacob Faibussowitsch {
77310fdc7489SMatthew Knepley   DMUniversalLabel ul;
77320fdc7489SMatthew Knepley   PetscBool       *active;
77330fdc7489SMatthew Knepley   PetscInt         pStart, pEnd, p, Nl, l, m;
77340fdc7489SMatthew Knepley 
77350fdc7489SMatthew Knepley   PetscFunctionBegin;
77369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(1, &ul));
77379566063dSJacob Faibussowitsch   PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label));
77389566063dSJacob Faibussowitsch   PetscCall(DMGetNumLabels(dm, &Nl));
77399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Nl, &active));
77400fdc7489SMatthew Knepley   ul->Nl = 0;
77410fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
77420fdc7489SMatthew Knepley     PetscBool   isdepth, iscelltype;
77430fdc7489SMatthew Knepley     const char *name;
77440fdc7489SMatthew Knepley 
77459566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77469566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "depth", 6, &isdepth));
77479566063dSJacob Faibussowitsch     PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype));
77480fdc7489SMatthew Knepley     active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE;
77490fdc7489SMatthew Knepley     if (active[l]) ++ul->Nl;
77500fdc7489SMatthew Knepley   }
77519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks));
77520fdc7489SMatthew Knepley   ul->Nv = 0;
77530fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77540fdc7489SMatthew Knepley     DMLabel     label;
77550fdc7489SMatthew Knepley     PetscInt    nv;
77560fdc7489SMatthew Knepley     const char *name;
77570fdc7489SMatthew Knepley 
77580fdc7489SMatthew Knepley     if (!active[l]) continue;
77599566063dSJacob Faibussowitsch     PetscCall(DMGetLabelName(dm, l, &name));
77609566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77619566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77629566063dSJacob Faibussowitsch     PetscCall(PetscStrallocpy(name, &ul->names[m]));
77630fdc7489SMatthew Knepley     ul->indices[m] = l;
77640fdc7489SMatthew Knepley     ul->Nv += nv;
77650fdc7489SMatthew Knepley     ul->offsets[m + 1] = nv;
77660fdc7489SMatthew Knepley     ul->bits[m + 1]    = PetscCeilReal(PetscLog2Real(nv + 1));
77670fdc7489SMatthew Knepley     ++m;
77680fdc7489SMatthew Knepley   }
77690fdc7489SMatthew Knepley   for (l = 1; l <= ul->Nl; ++l) {
77700fdc7489SMatthew Knepley     ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l];
77710fdc7489SMatthew Knepley     ul->bits[l]    = ul->bits[l - 1] + ul->bits[l];
77720fdc7489SMatthew Knepley   }
77730fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
77740fdc7489SMatthew Knepley     PetscInt b;
77750fdc7489SMatthew Knepley 
77760fdc7489SMatthew Knepley     ul->masks[l] = 0;
77770fdc7489SMatthew Knepley     for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b;
77780fdc7489SMatthew Knepley   }
77799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ul->Nv, &ul->values));
77800fdc7489SMatthew Knepley   for (l = 0, m = 0; l < Nl; ++l) {
77810fdc7489SMatthew Knepley     DMLabel         label;
77820fdc7489SMatthew Knepley     IS              valueIS;
77830fdc7489SMatthew Knepley     const PetscInt *varr;
77840fdc7489SMatthew Knepley     PetscInt        nv, v;
77850fdc7489SMatthew Knepley 
77860fdc7489SMatthew Knepley     if (!active[l]) continue;
77879566063dSJacob Faibussowitsch     PetscCall(DMGetLabelByNum(dm, l, &label));
77889566063dSJacob Faibussowitsch     PetscCall(DMLabelGetNumValues(label, &nv));
77899566063dSJacob Faibussowitsch     PetscCall(DMLabelGetValueIS(label, &valueIS));
77909566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(valueIS, &varr));
7791ad540459SPierre Jolivet     for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v];
77929566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(valueIS, &varr));
77939566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&valueIS));
77949566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]]));
77950fdc7489SMatthew Knepley     ++m;
77960fdc7489SMatthew Knepley   }
77979566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
77980fdc7489SMatthew Knepley   for (p = pStart; p < pEnd; ++p) {
77990fdc7489SMatthew Knepley     PetscInt  uval   = 0;
78000fdc7489SMatthew Knepley     PetscBool marked = PETSC_FALSE;
78010fdc7489SMatthew Knepley 
78020fdc7489SMatthew Knepley     for (l = 0, m = 0; l < Nl; ++l) {
78030fdc7489SMatthew Knepley       DMLabel  label;
78040649b39aSStefano Zampini       PetscInt val, defval, loc, nv;
78050fdc7489SMatthew Knepley 
78060fdc7489SMatthew Knepley       if (!active[l]) continue;
78079566063dSJacob Faibussowitsch       PetscCall(DMGetLabelByNum(dm, l, &label));
78089566063dSJacob Faibussowitsch       PetscCall(DMLabelGetValue(label, p, &val));
78099566063dSJacob Faibussowitsch       PetscCall(DMLabelGetDefaultValue(label, &defval));
78109371c9d4SSatish Balay       if (val == defval) {
78119371c9d4SSatish Balay         ++m;
78129371c9d4SSatish Balay         continue;
78139371c9d4SSatish Balay       }
78140649b39aSStefano Zampini       nv     = ul->offsets[m + 1] - ul->offsets[m];
78150fdc7489SMatthew Knepley       marked = PETSC_TRUE;
78169566063dSJacob Faibussowitsch       PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc));
781763a3b9bcSJacob Faibussowitsch       PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val);
78180fdc7489SMatthew Knepley       uval += (loc + 1) << ul->bits[m];
78190fdc7489SMatthew Knepley       ++m;
78200fdc7489SMatthew Knepley     }
78219566063dSJacob Faibussowitsch     if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval));
78220fdc7489SMatthew Knepley   }
78239566063dSJacob Faibussowitsch   PetscCall(PetscFree(active));
78240fdc7489SMatthew Knepley   *universal = ul;
78253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78260fdc7489SMatthew Knepley }
78270fdc7489SMatthew Knepley 
7828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal)
7829d71ae5a4SJacob Faibussowitsch {
78300fdc7489SMatthew Knepley   PetscInt l;
78310fdc7489SMatthew Knepley 
78320fdc7489SMatthew Knepley   PetscFunctionBegin;
78339566063dSJacob Faibussowitsch   for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l]));
78349566063dSJacob Faibussowitsch   PetscCall(DMLabelDestroy(&(*universal)->label));
78359566063dSJacob Faibussowitsch   PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks));
78369566063dSJacob Faibussowitsch   PetscCall(PetscFree((*universal)->values));
78379566063dSJacob Faibussowitsch   PetscCall(PetscFree(*universal));
78380fdc7489SMatthew Knepley   *universal = NULL;
78393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78400fdc7489SMatthew Knepley }
78410fdc7489SMatthew Knepley 
7842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel)
7843d71ae5a4SJacob Faibussowitsch {
78440fdc7489SMatthew Knepley   PetscFunctionBegin;
78454f572ea9SToby Isaac   PetscAssertPointer(ulabel, 2);
78460fdc7489SMatthew Knepley   *ulabel = ul->label;
78473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78480fdc7489SMatthew Knepley }
78490fdc7489SMatthew Knepley 
7850d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm)
7851d71ae5a4SJacob Faibussowitsch {
78520fdc7489SMatthew Knepley   PetscInt Nl = ul->Nl, l;
78530fdc7489SMatthew Knepley 
78540fdc7489SMatthew Knepley   PetscFunctionBegin;
7855064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(dm, DM_CLASSID, 3);
78560fdc7489SMatthew Knepley   for (l = 0; l < Nl; ++l) {
78579566063dSJacob Faibussowitsch     if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l]));
78589566063dSJacob Faibussowitsch     else PetscCall(DMCreateLabel(dm, ul->names[l]));
78590fdc7489SMatthew Knepley   }
78600fdc7489SMatthew Knepley   if (preserveOrder) {
78610fdc7489SMatthew Knepley     for (l = 0; l < ul->Nl; ++l) {
78620fdc7489SMatthew Knepley       const char *name;
78630fdc7489SMatthew Knepley       PetscBool   match;
78640fdc7489SMatthew Knepley 
78659566063dSJacob Faibussowitsch       PetscCall(DMGetLabelName(dm, ul->indices[l], &name));
78669566063dSJacob Faibussowitsch       PetscCall(PetscStrcmp(name, ul->names[l], &match));
786763a3b9bcSJacob Faibussowitsch       PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]);
78680fdc7489SMatthew Knepley     }
78690fdc7489SMatthew Knepley   }
78703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78710fdc7489SMatthew Knepley }
78720fdc7489SMatthew Knepley 
7873d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value)
7874d71ae5a4SJacob Faibussowitsch {
78750fdc7489SMatthew Knepley   PetscInt l;
78760fdc7489SMatthew Knepley 
78770fdc7489SMatthew Knepley   PetscFunctionBegin;
78780fdc7489SMatthew Knepley   for (l = 0; l < ul->Nl; ++l) {
78790fdc7489SMatthew Knepley     DMLabel  label;
78800fdc7489SMatthew Knepley     PetscInt lval = (value & ul->masks[l]) >> ul->bits[l];
78810fdc7489SMatthew Knepley 
78820fdc7489SMatthew Knepley     if (lval) {
78839566063dSJacob Faibussowitsch       if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label));
78849566063dSJacob Faibussowitsch       else PetscCall(DMGetLabel(dm, ul->names[l], &label));
78859566063dSJacob Faibussowitsch       PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1]));
78860fdc7489SMatthew Knepley     }
78870fdc7489SMatthew Knepley   }
78883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78890fdc7489SMatthew Knepley }
7890a8fb8f29SToby Isaac 
7891a8fb8f29SToby Isaac /*@
7892bb7acecfSBarry Smith   DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement
7893bb7acecfSBarry Smith 
789420f4b53cSBarry Smith   Not Collective
7895a8fb8f29SToby Isaac 
7896a8fb8f29SToby Isaac   Input Parameter:
7897bb7acecfSBarry Smith . dm - The `DM` object
7898a8fb8f29SToby Isaac 
7899a8fb8f29SToby Isaac   Output Parameter:
7900bb7acecfSBarry Smith . cdm - The coarse `DM`
7901a8fb8f29SToby Isaac 
7902a8fb8f29SToby Isaac   Level: intermediate
7903a8fb8f29SToby Isaac 
79041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()`
7905a8fb8f29SToby Isaac @*/
7906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm)
7907d71ae5a4SJacob Faibussowitsch {
7908a8fb8f29SToby Isaac   PetscFunctionBegin;
7909a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79104f572ea9SToby Isaac   PetscAssertPointer(cdm, 2);
7911a8fb8f29SToby Isaac   *cdm = dm->coarseMesh;
79123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7913a8fb8f29SToby Isaac }
7914a8fb8f29SToby Isaac 
7915a8fb8f29SToby Isaac /*@
7916bb7acecfSBarry Smith   DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement
7917a8fb8f29SToby Isaac 
7918a8fb8f29SToby Isaac   Input Parameters:
7919bb7acecfSBarry Smith + dm  - The `DM` object
7920bb7acecfSBarry Smith - cdm - The coarse `DM`
7921a8fb8f29SToby Isaac 
7922a8fb8f29SToby Isaac   Level: intermediate
7923a8fb8f29SToby Isaac 
7924bb7acecfSBarry Smith   Note:
7925bb7acecfSBarry Smith   Normally this is set automatically by `DMRefine()`
7926bb7acecfSBarry Smith 
79271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()`
7928a8fb8f29SToby Isaac @*/
7929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm)
7930d71ae5a4SJacob Faibussowitsch {
7931a8fb8f29SToby Isaac   PetscFunctionBegin;
7932a8fb8f29SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
7933a8fb8f29SToby Isaac   if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2);
793489d734beSBarry Smith   if (dm == cdm) cdm = NULL;
79359566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cdm));
79369566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->coarseMesh));
7937a8fb8f29SToby Isaac   dm->coarseMesh = cdm;
79383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7939a8fb8f29SToby Isaac }
7940a8fb8f29SToby Isaac 
794188bdff64SToby Isaac /*@
7942bb7acecfSBarry Smith   DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening
794388bdff64SToby Isaac 
794488bdff64SToby Isaac   Input Parameter:
7945bb7acecfSBarry Smith . dm - The `DM` object
794688bdff64SToby Isaac 
794788bdff64SToby Isaac   Output Parameter:
7948bb7acecfSBarry Smith . fdm - The fine `DM`
794988bdff64SToby Isaac 
795088bdff64SToby Isaac   Level: intermediate
795188bdff64SToby Isaac 
79521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()`
795388bdff64SToby Isaac @*/
7954d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm)
7955d71ae5a4SJacob Faibussowitsch {
795688bdff64SToby Isaac   PetscFunctionBegin;
795788bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
79584f572ea9SToby Isaac   PetscAssertPointer(fdm, 2);
795988bdff64SToby Isaac   *fdm = dm->fineMesh;
79603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
796188bdff64SToby Isaac }
796288bdff64SToby Isaac 
796388bdff64SToby Isaac /*@
7964bb7acecfSBarry Smith   DMSetFineDM - Set the fine mesh from which this was obtained by coarsening
796588bdff64SToby Isaac 
796688bdff64SToby Isaac   Input Parameters:
7967bb7acecfSBarry Smith + dm  - The `DM` object
7968bb7acecfSBarry Smith - fdm - The fine `DM`
796988bdff64SToby Isaac 
7970bb7acecfSBarry Smith   Level: developer
797188bdff64SToby Isaac 
7972bb7acecfSBarry Smith   Note:
7973bb7acecfSBarry Smith   Normally this is set automatically by `DMCoarsen()`
7974bb7acecfSBarry Smith 
79751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()`
797688bdff64SToby Isaac @*/
7977d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm)
7978d71ae5a4SJacob Faibussowitsch {
797988bdff64SToby Isaac   PetscFunctionBegin;
798088bdff64SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
798188bdff64SToby Isaac   if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2);
798289d734beSBarry Smith   if (dm == fdm) fdm = NULL;
79839566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)fdm));
79849566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm->fineMesh));
798588bdff64SToby Isaac   dm->fineMesh = fdm;
79863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
798788bdff64SToby Isaac }
798888bdff64SToby Isaac 
7989a6ba4734SToby Isaac /*@C
7990bb7acecfSBarry Smith   DMAddBoundary - Add a boundary condition to a model represented by a `DM`
7991a6ba4734SToby Isaac 
799220f4b53cSBarry Smith   Collective
7993783e2ec8SMatthew G. Knepley 
7994a6ba4734SToby Isaac   Input Parameters:
7995bb7acecfSBarry Smith + dm       - The `DM`, with a `PetscDS` that matches the problem being constrained
7996bb7acecfSBarry Smith . type     - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann)
7997a6ba4734SToby Isaac . name     - The BC name
799845480ffeSMatthew G. Knepley . label    - The label defining constrained points
7999bb7acecfSBarry Smith . Nv       - The number of `DMLabel` values for constrained points
800045480ffeSMatthew G. Knepley . values   - An array of values for constrained points
8001a6ba4734SToby Isaac . field    - The field to constrain
8002258f4e96SStefano Zampini . Nc       - The number of constrained field components (0 will constrain all components)
8003a6ba4734SToby Isaac . comps    - An array of constrained component numbers
8004a6ba4734SToby Isaac . bcFunc   - A pointwise function giving boundary values
800556cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL
8006a6ba4734SToby Isaac - ctx      - An optional user context for bcFunc
8007a6ba4734SToby Isaac 
800845480ffeSMatthew G. Knepley   Output Parameter:
800945480ffeSMatthew G. Knepley . bd - (Optional) Boundary number
801045480ffeSMatthew G. Knepley 
8011a6ba4734SToby Isaac   Options Database Keys:
8012a6ba4734SToby Isaac + -bc_<boundary name> <num>      - Overrides the boundary ids
8013a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components
8014a6ba4734SToby Isaac 
801520f4b53cSBarry Smith   Level: intermediate
801620f4b53cSBarry Smith 
8017bb7acecfSBarry Smith   Notes:
8018fa74d514SMatthew G. Knepley   If the `DM` is of type `DMPLEX` and the field is of type `PetscFE`, then this function completes the label using `DMPlexLabelComplete()`.
8019fa74d514SMatthew G. Knepley 
8020aeebefc2SPierre Jolivet   Both bcFunc and bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\:
802173ff1848SBarry Smith .vb
802273ff1848SBarry Smith  void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[])
802373ff1848SBarry Smith .ve
802456cf3b9cSMatthew G. Knepley 
8025a4e35b19SJacob Faibussowitsch   If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\:
802656cf3b9cSMatthew G. Knepley 
802720f4b53cSBarry Smith .vb
802820f4b53cSBarry Smith   void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux,
802920f4b53cSBarry Smith               const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[],
803020f4b53cSBarry Smith               const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[],
803120f4b53cSBarry Smith               PetscReal time, const PetscReal x[], PetscScalar bcval[])
803220f4b53cSBarry Smith .ve
803356cf3b9cSMatthew G. Knepley + dim - the spatial dimension
803456cf3b9cSMatthew G. Knepley . Nf - the number of fields
803556cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field
803656cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field
803756cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point
803856cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point
803956cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point
804056cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field
804156cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field
804256cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point
804356cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point
804456cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point
804556cf3b9cSMatthew G. Knepley . t - current time
804656cf3b9cSMatthew G. Knepley . x - coordinates of the current point
804756cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters
804856cf3b9cSMatthew G. Knepley . constants - constant parameters
804956cf3b9cSMatthew G. Knepley - bcval - output values at the current point
805056cf3b9cSMatthew G. Knepley 
80511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()`
8052a6ba4734SToby Isaac @*/
8053d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd)
8054d71ae5a4SJacob Faibussowitsch {
8055e5e52638SMatthew G. Knepley   PetscDS ds;
8056a6ba4734SToby Isaac 
8057a6ba4734SToby Isaac   PetscFunctionBegin;
8058a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8059783e2ec8SMatthew G. Knepley   PetscValidLogicalCollectiveEnum(dm, type, 2);
806045480ffeSMatthew G. Knepley   PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4);
806145480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nv, 5);
806245480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, field, 7);
806345480ffeSMatthew G. Knepley   PetscValidLogicalCollectiveInt(dm, Nc, 8);
806401a5d20dSJed Brown   PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section");
80659566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8066799db056SMatthew G. Knepley   /* Complete label */
8067799db056SMatthew G. Knepley   if (label) {
8068799db056SMatthew G. Knepley     PetscObject  obj;
8069799db056SMatthew G. Knepley     PetscClassId id;
8070799db056SMatthew G. Knepley 
8071799db056SMatthew G. Knepley     PetscCall(DMGetField(dm, field, NULL, &obj));
8072799db056SMatthew G. Knepley     PetscCall(PetscObjectGetClassId(obj, &id));
8073799db056SMatthew G. Knepley     if (id == PETSCFE_CLASSID) {
8074799db056SMatthew G. Knepley       DM plex;
8075799db056SMatthew G. Knepley 
8076799db056SMatthew G. Knepley       PetscCall(DMConvert(dm, DMPLEX, &plex));
8077799db056SMatthew G. Knepley       if (plex) PetscCall(DMPlexLabelComplete(plex, label));
8078799db056SMatthew G. Knepley       PetscCall(DMDestroy(&plex));
8079799db056SMatthew G. Knepley     }
8080799db056SMatthew G. Knepley   }
80819566063dSJacob Faibussowitsch   PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd));
80823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8083a6ba4734SToby Isaac }
8084a6ba4734SToby Isaac 
808545480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */
8086d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm)
8087d71ae5a4SJacob Faibussowitsch {
8088e5e52638SMatthew G. Knepley   PetscDS     ds;
8089dff059c6SToby Isaac   DMBoundary *lastnext;
8090e6f8dbb6SToby Isaac   DSBoundary  dsbound;
8091e6f8dbb6SToby Isaac 
8092e6f8dbb6SToby Isaac   PetscFunctionBegin;
80939566063dSJacob Faibussowitsch   PetscCall(DMGetDS(dm, &ds));
8094e5e52638SMatthew G. Knepley   dsbound = ds->boundary;
809547a1f5adSToby Isaac   if (dm->boundary) {
809647a1f5adSToby Isaac     DMBoundary next = dm->boundary;
809747a1f5adSToby Isaac 
809847a1f5adSToby Isaac     /* quick check to see if the PetscDS has changed */
80993ba16761SJacob Faibussowitsch     if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS);
810047a1f5adSToby Isaac     /* the PetscDS has changed: tear down and rebuild */
810147a1f5adSToby Isaac     while (next) {
810247a1f5adSToby Isaac       DMBoundary b = next;
810347a1f5adSToby Isaac 
810447a1f5adSToby Isaac       next = b->next;
81059566063dSJacob Faibussowitsch       PetscCall(PetscFree(b));
8106a6ba4734SToby Isaac     }
810747a1f5adSToby Isaac     dm->boundary = NULL;
8108a6ba4734SToby Isaac   }
810947a1f5adSToby Isaac 
8110f4f49eeaSPierre Jolivet   lastnext = &dm->boundary;
8111e6f8dbb6SToby Isaac   while (dsbound) {
8112e6f8dbb6SToby Isaac     DMBoundary dmbound;
8113e6f8dbb6SToby Isaac 
81149566063dSJacob Faibussowitsch     PetscCall(PetscNew(&dmbound));
8115e6f8dbb6SToby Isaac     dmbound->dsboundary = dsbound;
811645480ffeSMatthew G. Knepley     dmbound->label      = dsbound->label;
811747a1f5adSToby Isaac     /* push on the back instead of the front so that it is in the same order as in the PetscDS */
8118dff059c6SToby Isaac     *lastnext = dmbound;
8119f4f49eeaSPierre Jolivet     lastnext  = &dmbound->next;
8120dff059c6SToby Isaac     dsbound   = dsbound->next;
8121a6ba4734SToby Isaac   }
81223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8123a6ba4734SToby Isaac }
8124a6ba4734SToby Isaac 
8125bb7acecfSBarry Smith /* TODO: missing manual page */
8126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd)
8127d71ae5a4SJacob Faibussowitsch {
8128b95f2879SToby Isaac   DMBoundary b;
8129a6ba4734SToby Isaac 
8130a6ba4734SToby Isaac   PetscFunctionBegin;
8131a6ba4734SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
81324f572ea9SToby Isaac   PetscAssertPointer(isBd, 3);
8133a6ba4734SToby Isaac   *isBd = PETSC_FALSE;
81349566063dSJacob Faibussowitsch   PetscCall(DMPopulateBoundary(dm));
8135b95f2879SToby Isaac   b = dm->boundary;
813657508eceSPierre Jolivet   while (b && !*isBd) {
8137e6f8dbb6SToby Isaac     DMLabel    label = b->label;
8138e6f8dbb6SToby Isaac     DSBoundary dsb   = b->dsboundary;
8139a6ba4734SToby Isaac     PetscInt   i;
8140a6ba4734SToby Isaac 
814145480ffeSMatthew G. Knepley     if (label) {
814257508eceSPierre Jolivet       for (i = 0; i < dsb->Nv && !*isBd; ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd));
8143a6ba4734SToby Isaac     }
8144a6ba4734SToby Isaac     b = b->next;
8145a6ba4734SToby Isaac   }
81463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8147a6ba4734SToby Isaac }
81484d6f44ffSToby Isaac 
814901468941SMatthew G. Knepley /*@
815001468941SMatthew G. Knepley   DMHasBound - Determine whether a bound condition was specified
815101468941SMatthew G. Knepley 
815201468941SMatthew G. Knepley   Logically collective
815301468941SMatthew G. Knepley 
815401468941SMatthew G. Knepley   Input Parameter:
815501468941SMatthew G. Knepley . dm - The `DM`, with a `PetscDS` that matches the problem being constrained
815601468941SMatthew G. Knepley 
815701468941SMatthew G. Knepley   Output Parameter:
815801468941SMatthew G. Knepley . hasBound - Flag indicating if a bound condition was specified
815901468941SMatthew G. Knepley 
816001468941SMatthew G. Knepley   Level: intermediate
816101468941SMatthew G. Knepley 
816201468941SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DSAddBoundary()`, `PetscDSAddBoundary()`
816301468941SMatthew G. Knepley @*/
816401468941SMatthew G. Knepley PetscErrorCode DMHasBound(DM dm, PetscBool *hasBound)
816501468941SMatthew G. Knepley {
816601468941SMatthew G. Knepley   PetscDS  ds;
816701468941SMatthew G. Knepley   PetscInt Nf, numBd;
816801468941SMatthew G. Knepley 
816901468941SMatthew G. Knepley   PetscFunctionBegin;
817001468941SMatthew G. Knepley   *hasBound = PETSC_FALSE;
817101468941SMatthew G. Knepley   PetscCall(DMGetDS(dm, &ds));
817201468941SMatthew G. Knepley   PetscCall(PetscDSGetNumFields(ds, &Nf));
817301468941SMatthew G. Knepley   for (PetscInt f = 0; f < Nf; ++f) {
81742192575eSBarry Smith     PetscSimplePointFn *lfunc, *ufunc;
817501468941SMatthew G. Knepley 
817601468941SMatthew G. Knepley     PetscCall(PetscDSGetLowerBound(ds, f, &lfunc, NULL));
817701468941SMatthew G. Knepley     PetscCall(PetscDSGetUpperBound(ds, f, &ufunc, NULL));
817801468941SMatthew G. Knepley     if (lfunc || ufunc) *hasBound = PETSC_TRUE;
817901468941SMatthew G. Knepley   }
818001468941SMatthew G. Knepley 
818101468941SMatthew G. Knepley   PetscCall(PetscDSGetNumBoundary(ds, &numBd));
818201468941SMatthew G. Knepley   PetscCall(PetscDSUpdateBoundaryLabels(ds, dm));
818301468941SMatthew G. Knepley   for (PetscInt b = 0; b < numBd; ++b) {
818401468941SMatthew G. Knepley     PetscWeakForm           wf;
818501468941SMatthew G. Knepley     DMBoundaryConditionType type;
818601468941SMatthew G. Knepley     const char             *name;
818701468941SMatthew G. Knepley     DMLabel                 label;
818801468941SMatthew G. Knepley     PetscInt                numids;
818901468941SMatthew G. Knepley     const PetscInt         *ids;
819001468941SMatthew G. Knepley     PetscInt                field, Nc;
819101468941SMatthew G. Knepley     const PetscInt         *comps;
819201468941SMatthew G. Knepley     void (*bvfunc)(void);
819301468941SMatthew G. Knepley     void *ctx;
819401468941SMatthew G. Knepley 
819501468941SMatthew G. Knepley     PetscCall(PetscDSGetBoundary(ds, b, &wf, &type, &name, &label, &numids, &ids, &field, &Nc, &comps, &bvfunc, NULL, &ctx));
819601468941SMatthew G. Knepley     if (type == DM_BC_LOWER_BOUND || type == DM_BC_UPPER_BOUND) *hasBound = PETSC_TRUE;
819701468941SMatthew G. Knepley   }
819801468941SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
819901468941SMatthew G. Knepley }
820001468941SMatthew G. Knepley 
82014d6f44ffSToby Isaac /*@C
8202bb7acecfSBarry Smith   DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector.
8203a6e0b375SMatthew G. Knepley 
820420f4b53cSBarry Smith   Collective
82054d6f44ffSToby Isaac 
82064d6f44ffSToby Isaac   Input Parameters:
8207bb7acecfSBarry Smith + dm    - The `DM`
82080709b2feSToby Isaac . time  - The time
82094d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field
82104d6f44ffSToby Isaac . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
82114d6f44ffSToby Isaac - mode  - The insertion mode for values
82124d6f44ffSToby Isaac 
82134d6f44ffSToby Isaac   Output Parameter:
82144d6f44ffSToby Isaac . X - vector
82154d6f44ffSToby Isaac 
821620f4b53cSBarry Smith   Calling sequence of `funcs`:
82174d6f44ffSToby Isaac + dim  - The spatial dimension
82188ec8862eSJed Brown . time - The time at which to sample
82194d6f44ffSToby Isaac . x    - The coordinates
822077b739a6SMatthew Knepley . Nc   - The number of components
82214d6f44ffSToby Isaac . u    - The output field values
82224d6f44ffSToby Isaac - ctx  - optional user-defined function context
82234d6f44ffSToby Isaac 
82244d6f44ffSToby Isaac   Level: developer
82254d6f44ffSToby Isaac 
8226bb7acecfSBarry Smith   Developer Notes:
8227bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8228bb7acecfSBarry Smith 
8229bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8230bb7acecfSBarry Smith 
82311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
82324d6f44ffSToby Isaac @*/
8233a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8234d71ae5a4SJacob Faibussowitsch {
82354d6f44ffSToby Isaac   Vec localX;
82364d6f44ffSToby Isaac 
82374d6f44ffSToby Isaac   PetscFunctionBegin;
82384d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8239708be2fdSJed Brown   PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0));
82409566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8241f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
82429566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX));
82439566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
82449566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
82459566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
8246708be2fdSJed Brown   PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0));
82473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82484d6f44ffSToby Isaac }
82494d6f44ffSToby Isaac 
8250a6e0b375SMatthew G. Knepley /*@C
8251bb7acecfSBarry Smith   DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector.
8252a6e0b375SMatthew G. Knepley 
825320f4b53cSBarry Smith   Not Collective
8254a6e0b375SMatthew G. Knepley 
8255a6e0b375SMatthew G. Knepley   Input Parameters:
8256bb7acecfSBarry Smith + dm    - The `DM`
8257a6e0b375SMatthew G. Knepley . time  - The time
8258a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field
8259a6e0b375SMatthew G. Knepley . ctxs  - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8260a6e0b375SMatthew G. Knepley - mode  - The insertion mode for values
8261a6e0b375SMatthew G. Knepley 
8262a6e0b375SMatthew G. Knepley   Output Parameter:
8263a6e0b375SMatthew G. Knepley . localX - vector
8264a6e0b375SMatthew G. Knepley 
826520f4b53cSBarry Smith   Calling sequence of `funcs`:
8266a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8267a4e35b19SJacob Faibussowitsch . time - The current timestep
8268a6e0b375SMatthew G. Knepley . x    - The coordinates
826977b739a6SMatthew Knepley . Nc   - The number of components
8270a6e0b375SMatthew G. Knepley . u    - The output field values
8271a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8272a6e0b375SMatthew G. Knepley 
8273a6e0b375SMatthew G. Knepley   Level: developer
8274a6e0b375SMatthew G. Knepley 
8275bb7acecfSBarry Smith   Developer Notes:
8276bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8277bb7acecfSBarry Smith 
8278bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8279bb7acecfSBarry Smith 
82801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8281a6e0b375SMatthew G. Knepley @*/
8282a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8283d71ae5a4SJacob Faibussowitsch {
82844d6f44ffSToby Isaac   PetscFunctionBegin;
82854d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8286064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8287fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX);
82883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
82894d6f44ffSToby Isaac }
82904d6f44ffSToby Isaac 
8291a6e0b375SMatthew G. Knepley /*@C
8292bb7acecfSBarry Smith   DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label.
8293a6e0b375SMatthew G. Knepley 
829420f4b53cSBarry Smith   Collective
8295a6e0b375SMatthew G. Knepley 
8296a6e0b375SMatthew G. Knepley   Input Parameters:
8297bb7acecfSBarry Smith + dm     - The `DM`
8298a6e0b375SMatthew G. Knepley . time   - The time
8299a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8300a4e35b19SJacob Faibussowitsch . ids    - The ids
8301a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8302a4e35b19SJacob Faibussowitsch . comps  - The components
8303bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8304a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8305bb7acecfSBarry Smith . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs may be null.
8306a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8307a6e0b375SMatthew G. Knepley 
8308a6e0b375SMatthew G. Knepley   Output Parameter:
8309a6e0b375SMatthew G. Knepley . X - vector
8310a6e0b375SMatthew G. Knepley 
831120f4b53cSBarry Smith   Calling sequence of `funcs`:
8312a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8313a4e35b19SJacob Faibussowitsch . time - The current timestep
8314a6e0b375SMatthew G. Knepley . x    - The coordinates
831577b739a6SMatthew Knepley . Nc   - The number of components
8316a6e0b375SMatthew G. Knepley . u    - The output field values
8317a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8318a6e0b375SMatthew G. Knepley 
8319a6e0b375SMatthew G. Knepley   Level: developer
8320a6e0b375SMatthew G. Knepley 
8321bb7acecfSBarry Smith   Developer Notes:
8322bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8323bb7acecfSBarry Smith 
8324bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8325bb7acecfSBarry Smith 
83261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()`
8327a6e0b375SMatthew G. Knepley @*/
8328a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X)
8329d71ae5a4SJacob Faibussowitsch {
83302c53366bSMatthew G. Knepley   Vec localX;
83312c53366bSMatthew G. Knepley 
83322c53366bSMatthew G. Knepley   PetscFunctionBegin;
83332c53366bSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
83349566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(dm, &localX));
8335f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
83369566063dSJacob Faibussowitsch   PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX));
83379566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
83389566063dSJacob Faibussowitsch   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
83399566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(dm, &localX));
83403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83412c53366bSMatthew G. Knepley }
83422c53366bSMatthew G. Knepley 
8343a6e0b375SMatthew G. Knepley /*@C
8344bb7acecfSBarry Smith   DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label.
8345a6e0b375SMatthew G. Knepley 
834620f4b53cSBarry Smith   Not Collective
8347a6e0b375SMatthew G. Knepley 
8348a6e0b375SMatthew G. Knepley   Input Parameters:
8349bb7acecfSBarry Smith + dm     - The `DM`
8350a6e0b375SMatthew G. Knepley . time   - The time
8351bb7acecfSBarry Smith . label  - The `DMLabel` selecting the portion of the mesh for projection
8352a4e35b19SJacob Faibussowitsch . numIds - The number of ids
8353a4e35b19SJacob Faibussowitsch . ids    - The ids
8354a4e35b19SJacob Faibussowitsch . Nc     - The number of components
8355a4e35b19SJacob Faibussowitsch . comps  - The components
8356a6e0b375SMatthew G. Knepley . funcs  - The coordinate functions to evaluate, one per field
8357a6e0b375SMatthew G. Knepley . ctxs   - Optional array of contexts to pass to each coordinate function.  ctxs itself may be null.
8358a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8359a6e0b375SMatthew G. Knepley 
8360a6e0b375SMatthew G. Knepley   Output Parameter:
8361a6e0b375SMatthew G. Knepley . localX - vector
8362a6e0b375SMatthew G. Knepley 
836320f4b53cSBarry Smith   Calling sequence of `funcs`:
8364a6e0b375SMatthew G. Knepley + dim  - The spatial dimension
8365a4e35b19SJacob Faibussowitsch . time - The current time
8366a6e0b375SMatthew G. Knepley . x    - The coordinates
836777b739a6SMatthew Knepley . Nc   - The number of components
8368a6e0b375SMatthew G. Knepley . u    - The output field values
8369a6e0b375SMatthew G. Knepley - ctx  - optional user-defined function context
8370a6e0b375SMatthew G. Knepley 
8371a6e0b375SMatthew G. Knepley   Level: developer
8372a6e0b375SMatthew G. Knepley 
8373bb7acecfSBarry Smith   Developer Notes:
8374bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8375bb7acecfSBarry Smith 
8376bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8377bb7acecfSBarry Smith 
83781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()`
8379a6e0b375SMatthew G. Knepley @*/
8380a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX)
8381d71ae5a4SJacob Faibussowitsch {
83824d6f44ffSToby Isaac   PetscFunctionBegin;
83834d6f44ffSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8384064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8385fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX);
83863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
83874d6f44ffSToby Isaac }
83882716604bSToby Isaac 
8389a6e0b375SMatthew G. Knepley /*@C
8390bb7acecfSBarry Smith   DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector.
8391a6e0b375SMatthew G. Knepley 
839220f4b53cSBarry Smith   Not Collective
8393a6e0b375SMatthew G. Knepley 
8394a6e0b375SMatthew G. Knepley   Input Parameters:
8395bb7acecfSBarry Smith + dm     - The `DM`
8396a6e0b375SMatthew G. Knepley . time   - The time
839720f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates
8398a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8399a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8400a6e0b375SMatthew G. Knepley 
8401a6e0b375SMatthew G. Knepley   Output Parameter:
8402a6e0b375SMatthew G. Knepley . localX - The output vector
8403a6e0b375SMatthew G. Knepley 
840420f4b53cSBarry Smith   Calling sequence of `funcs`:
8405a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8406a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8407a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8408a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8409a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8410a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8411a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8412a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8413a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8414a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8415a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8416a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8417a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8418a6e0b375SMatthew G. Knepley . t            - The current time
8419a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8420a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8421a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8422a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8423a6e0b375SMatthew G. Knepley 
842473ff1848SBarry Smith   Level: intermediate
842573ff1848SBarry Smith 
8426bb7acecfSBarry Smith   Note:
8427bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8428bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8429bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8430a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8431a6e0b375SMatthew G. Knepley 
8432bb7acecfSBarry Smith   Developer Notes:
8433bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8434bb7acecfSBarry Smith 
8435bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8436bb7acecfSBarry Smith 
8437a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`,
8438a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()`
8439a6e0b375SMatthew G. Knepley @*/
8440a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8441d71ae5a4SJacob Faibussowitsch {
84428c6c5593SMatthew G. Knepley   PetscFunctionBegin;
84438c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8444eb8f539aSJed Brown   if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3);
84458c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(localX, VEC_CLASSID, 6);
8446fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX);
84473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
84488c6c5593SMatthew G. Knepley }
84498c6c5593SMatthew G. Knepley 
8450a6e0b375SMatthew G. Knepley /*@C
8451a6e0b375SMatthew G. Knepley   DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label.
8452a6e0b375SMatthew G. Knepley 
845320f4b53cSBarry Smith   Not Collective
8454a6e0b375SMatthew G. Knepley 
8455a6e0b375SMatthew G. Knepley   Input Parameters:
8456bb7acecfSBarry Smith + dm     - The `DM`
8457a6e0b375SMatthew G. Knepley . time   - The time
8458bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8459a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use
8460a6e0b375SMatthew G. Knepley . ids    - The label ids to use for marking
8461bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
846220f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8463a6e0b375SMatthew G. Knepley . localU - The input field vector
8464a6e0b375SMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8465a6e0b375SMatthew G. Knepley - mode   - The insertion mode for values
8466a6e0b375SMatthew G. Knepley 
8467a6e0b375SMatthew G. Knepley   Output Parameter:
8468a6e0b375SMatthew G. Knepley . localX - The output vector
8469a6e0b375SMatthew G. Knepley 
847020f4b53cSBarry Smith   Calling sequence of `funcs`:
8471a6e0b375SMatthew G. Knepley + dim          - The spatial dimension
8472a6e0b375SMatthew G. Knepley . Nf           - The number of input fields
8473a6e0b375SMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8474a6e0b375SMatthew G. Knepley . uOff         - The offset of each field in u[]
8475a6e0b375SMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8476a6e0b375SMatthew G. Knepley . u            - The field values at this point in space
8477a6e0b375SMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8478a6e0b375SMatthew G. Knepley . u_x          - The field derivatives at this point in space
8479a6e0b375SMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8480a6e0b375SMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8481a6e0b375SMatthew G. Knepley . a            - The auxiliary field values at this point in space
8482a6e0b375SMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8483a6e0b375SMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8484a6e0b375SMatthew G. Knepley . t            - The current time
8485a6e0b375SMatthew G. Knepley . x            - The coordinates of this point
8486a6e0b375SMatthew G. Knepley . numConstants - The number of constants
8487a6e0b375SMatthew G. Knepley . constants    - The value of each constant
8488a6e0b375SMatthew G. Knepley - f            - The value of the function at this point in space
8489a6e0b375SMatthew G. Knepley 
849073ff1848SBarry Smith   Level: intermediate
849173ff1848SBarry Smith 
8492bb7acecfSBarry Smith   Note:
8493bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8494bb7acecfSBarry Smith   The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8495bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8496a6e0b375SMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8497a6e0b375SMatthew G. Knepley 
8498bb7acecfSBarry Smith   Developer Notes:
8499bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8500bb7acecfSBarry Smith 
8501bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8502bb7acecfSBarry Smith 
85031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8504a6e0b375SMatthew G. Knepley @*/
8505a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8506d71ae5a4SJacob Faibussowitsch {
85078c6c5593SMatthew G. Knepley   PetscFunctionBegin;
85088c6c5593SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8509064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8510064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8511fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
85123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
85138c6c5593SMatthew G. Knepley }
85148c6c5593SMatthew G. Knepley 
85152716604bSToby Isaac /*@C
8516d29d7c6eSMatthew G. Knepley   DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label.
8517d29d7c6eSMatthew G. Knepley 
851820f4b53cSBarry Smith   Not Collective
8519d29d7c6eSMatthew G. Knepley 
8520d29d7c6eSMatthew G. Knepley   Input Parameters:
8521bb7acecfSBarry Smith + dm     - The `DM`
8522d29d7c6eSMatthew G. Knepley . time   - The time
8523bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain to output
8524d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use
8525d29d7c6eSMatthew G. Knepley . ids    - The label ids to use for marking
8526bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
852720f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8528d29d7c6eSMatthew G. Knepley . U      - The input field vector
8529d29d7c6eSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8530d29d7c6eSMatthew G. Knepley - mode   - The insertion mode for values
8531d29d7c6eSMatthew G. Knepley 
8532d29d7c6eSMatthew G. Knepley   Output Parameter:
8533d29d7c6eSMatthew G. Knepley . X - The output vector
8534d29d7c6eSMatthew G. Knepley 
853520f4b53cSBarry Smith   Calling sequence of `funcs`:
8536d29d7c6eSMatthew G. Knepley + dim          - The spatial dimension
8537d29d7c6eSMatthew G. Knepley . Nf           - The number of input fields
8538d29d7c6eSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8539d29d7c6eSMatthew G. Knepley . uOff         - The offset of each field in u[]
8540d29d7c6eSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8541d29d7c6eSMatthew G. Knepley . u            - The field values at this point in space
8542d29d7c6eSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8543d29d7c6eSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8544d29d7c6eSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8545d29d7c6eSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8546d29d7c6eSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8547d29d7c6eSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8548d29d7c6eSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8549d29d7c6eSMatthew G. Knepley . t            - The current time
8550d29d7c6eSMatthew G. Knepley . x            - The coordinates of this point
8551d29d7c6eSMatthew G. Knepley . numConstants - The number of constants
8552d29d7c6eSMatthew G. Knepley . constants    - The value of each constant
8553d29d7c6eSMatthew G. Knepley - f            - The value of the function at this point in space
8554d29d7c6eSMatthew G. Knepley 
855573ff1848SBarry Smith   Level: intermediate
855673ff1848SBarry Smith 
8557bb7acecfSBarry Smith   Note:
8558bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8559bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8560bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8561d29d7c6eSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8562d29d7c6eSMatthew G. Knepley 
8563bb7acecfSBarry Smith   Developer Notes:
8564bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8565bb7acecfSBarry Smith 
8566bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8567bb7acecfSBarry Smith 
85681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8569d29d7c6eSMatthew G. Knepley @*/
8570a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X)
8571d71ae5a4SJacob Faibussowitsch {
8572d29d7c6eSMatthew G. Knepley   DM  dmIn;
8573d29d7c6eSMatthew G. Knepley   Vec localU, localX;
8574d29d7c6eSMatthew G. Knepley 
8575d29d7c6eSMatthew G. Knepley   PetscFunctionBegin;
8576d29d7c6eSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8577d29d7c6eSMatthew G. Knepley   PetscCall(VecGetDM(U, &dmIn));
8578d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dmIn, &localU));
8579d29d7c6eSMatthew G. Knepley   PetscCall(DMGetLocalVector(dm, &localX));
8580f60fa741SMatthew G. Knepley   PetscCall(VecSet(localX, 0.));
858172fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU));
858272fc1ce5SMatthew G. Knepley   PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU));
8583d29d7c6eSMatthew G. Knepley   PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX));
8584d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X));
8585d29d7c6eSMatthew G. Knepley   PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X));
8586d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dm, &localX));
8587d29d7c6eSMatthew G. Knepley   PetscCall(DMRestoreLocalVector(dmIn, &localU));
85883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8589d29d7c6eSMatthew G. Knepley }
8590d29d7c6eSMatthew G. Knepley 
8591d29d7c6eSMatthew G. Knepley /*@C
8592ece3a9fcSMatthew G. Knepley   DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label.
8593ece3a9fcSMatthew G. Knepley 
859420f4b53cSBarry Smith   Not Collective
8595ece3a9fcSMatthew G. Knepley 
8596ece3a9fcSMatthew G. Knepley   Input Parameters:
8597bb7acecfSBarry Smith + dm     - The `DM`
8598ece3a9fcSMatthew G. Knepley . time   - The time
8599bb7acecfSBarry Smith . label  - The `DMLabel` marking the portion of the domain boundary to output
8600ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use
8601ece3a9fcSMatthew G. Knepley . ids    - The label ids to use for marking
8602bb7acecfSBarry Smith . Nc     - The number of components to set in the output, or `PETSC_DETERMINE` for all components
860320f4b53cSBarry Smith . comps  - The components to set in the output, or `NULL` for all components
8604ece3a9fcSMatthew G. Knepley . localU - The input field vector
8605ece3a9fcSMatthew G. Knepley . funcs  - The functions to evaluate, one per field
8606ece3a9fcSMatthew G. Knepley - mode   - The insertion mode for values
8607ece3a9fcSMatthew G. Knepley 
8608ece3a9fcSMatthew G. Knepley   Output Parameter:
8609ece3a9fcSMatthew G. Knepley . localX - The output vector
8610ece3a9fcSMatthew G. Knepley 
861120f4b53cSBarry Smith   Calling sequence of `funcs`:
8612ece3a9fcSMatthew G. Knepley + dim          - The spatial dimension
8613ece3a9fcSMatthew G. Knepley . Nf           - The number of input fields
8614ece3a9fcSMatthew G. Knepley . NfAux        - The number of input auxiliary fields
8615ece3a9fcSMatthew G. Knepley . uOff         - The offset of each field in u[]
8616ece3a9fcSMatthew G. Knepley . uOff_x       - The offset of each field in u_x[]
8617ece3a9fcSMatthew G. Knepley . u            - The field values at this point in space
8618ece3a9fcSMatthew G. Knepley . u_t          - The field time derivative at this point in space (or NULL)
8619ece3a9fcSMatthew G. Knepley . u_x          - The field derivatives at this point in space
8620ece3a9fcSMatthew G. Knepley . aOff         - The offset of each auxiliary field in u[]
8621ece3a9fcSMatthew G. Knepley . aOff_x       - The offset of each auxiliary field in u_x[]
8622ece3a9fcSMatthew G. Knepley . a            - The auxiliary field values at this point in space
8623ece3a9fcSMatthew G. Knepley . a_t          - The auxiliary field time derivative at this point in space (or NULL)
8624ece3a9fcSMatthew G. Knepley . a_x          - The auxiliary field derivatives at this point in space
8625ece3a9fcSMatthew G. Knepley . t            - The current time
8626ece3a9fcSMatthew G. Knepley . x            - The coordinates of this point
8627ece3a9fcSMatthew G. Knepley . n            - The face normal
8628ece3a9fcSMatthew G. Knepley . numConstants - The number of constants
8629ece3a9fcSMatthew G. Knepley . constants    - The value of each constant
8630ece3a9fcSMatthew G. Knepley - f            - The value of the function at this point in space
8631ece3a9fcSMatthew G. Knepley 
863273ff1848SBarry Smith   Level: intermediate
863373ff1848SBarry Smith 
8634ece3a9fcSMatthew G. Knepley   Note:
8635bb7acecfSBarry Smith   There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs.
8636bb7acecfSBarry Smith   The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or
8637bb7acecfSBarry Smith   a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the
8638ece3a9fcSMatthew G. Knepley   auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations.
8639ece3a9fcSMatthew G. Knepley 
8640bb7acecfSBarry Smith   Developer Notes:
8641bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8642bb7acecfSBarry Smith 
8643bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8644bb7acecfSBarry Smith 
86451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()`
8646ece3a9fcSMatthew G. Knepley @*/
8647a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX)
8648d71ae5a4SJacob Faibussowitsch {
8649ece3a9fcSMatthew G. Knepley   PetscFunctionBegin;
8650ece3a9fcSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8651064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localU, VEC_CLASSID, 8);
8652064a246eSJacob Faibussowitsch   PetscValidHeaderSpecific(localX, VEC_CLASSID, 11);
8653fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX);
86543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8655ece3a9fcSMatthew G. Knepley }
8656ece3a9fcSMatthew G. Knepley 
8657ece3a9fcSMatthew G. Knepley /*@C
86582716604bSToby Isaac   DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h.
86592716604bSToby Isaac 
866020f4b53cSBarry Smith   Collective
8661bb7acecfSBarry Smith 
86622716604bSToby Isaac   Input Parameters:
8663bb7acecfSBarry Smith + dm    - The `DM`
86640709b2feSToby Isaac . time  - The time
86652716604bSToby Isaac . funcs - The functions to evaluate for each field component
86662716604bSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8667574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
86682716604bSToby Isaac 
86692716604bSToby Isaac   Output Parameter:
86702716604bSToby Isaac . diff - The diff ||u - u_h||_2
86712716604bSToby Isaac 
86722716604bSToby Isaac   Level: developer
86732716604bSToby Isaac 
8674bb7acecfSBarry Smith   Developer Notes:
8675bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8676bb7acecfSBarry Smith 
8677bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8678bb7acecfSBarry Smith 
86791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()`
86802716604bSToby Isaac @*/
8681d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff)
8682d71ae5a4SJacob Faibussowitsch {
86832716604bSToby Isaac   PetscFunctionBegin;
86842716604bSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8685b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8686fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff);
86873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
86882716604bSToby Isaac }
8689b698f381SToby Isaac 
8690b698f381SToby Isaac /*@C
8691b698f381SToby Isaac   DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h.
8692b698f381SToby Isaac 
869320f4b53cSBarry Smith   Collective
8694d083f849SBarry Smith 
8695b698f381SToby Isaac   Input Parameters:
8696bb7acecfSBarry Smith + dm    - The `DM`
8697a4e35b19SJacob Faibussowitsch . time  - The time
8698b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component
8699b698f381SToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8700574a98acSMatthew G. Knepley . X     - The coefficient vector u_h, a global vector
8701b698f381SToby Isaac - n     - The vector to project along
8702b698f381SToby Isaac 
8703b698f381SToby Isaac   Output Parameter:
8704b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2
8705b698f381SToby Isaac 
8706b698f381SToby Isaac   Level: developer
8707b698f381SToby Isaac 
8708bb7acecfSBarry Smith   Developer Notes:
8709bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8710bb7acecfSBarry Smith 
8711bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8712bb7acecfSBarry Smith 
87131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()`
8714b698f381SToby Isaac @*/
8715d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff)
8716d71ae5a4SJacob Faibussowitsch {
8717b698f381SToby Isaac   PetscFunctionBegin;
8718b698f381SToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8719b698f381SToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8720fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff);
87213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8722b698f381SToby Isaac }
8723b698f381SToby Isaac 
87242a16baeaSToby Isaac /*@C
87252a16baeaSToby Isaac   DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components.
87262a16baeaSToby Isaac 
872720f4b53cSBarry Smith   Collective
8728d083f849SBarry Smith 
87292a16baeaSToby Isaac   Input Parameters:
8730bb7acecfSBarry Smith + dm    - The `DM`
87312a16baeaSToby Isaac . time  - The time
87322a16baeaSToby Isaac . funcs - The functions to evaluate for each field component
87332a16baeaSToby Isaac . ctxs  - Optional array of contexts to pass to each function, or NULL.
8734574a98acSMatthew G. Knepley - X     - The coefficient vector u_h, a global vector
87352a16baeaSToby Isaac 
87362a16baeaSToby Isaac   Output Parameter:
87372a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2
87382a16baeaSToby Isaac 
87392a16baeaSToby Isaac   Level: developer
87402a16baeaSToby Isaac 
8741bb7acecfSBarry Smith   Developer Notes:
8742bb7acecfSBarry Smith   This API is specific to only particular usage of `DM`
8743bb7acecfSBarry Smith 
8744bb7acecfSBarry Smith   The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation.
8745bb7acecfSBarry Smith 
874642747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()`
87472a16baeaSToby Isaac @*/
8748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[])
8749d71ae5a4SJacob Faibussowitsch {
87502a16baeaSToby Isaac   PetscFunctionBegin;
87512a16baeaSToby Isaac   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
87522a16baeaSToby Isaac   PetscValidHeaderSpecific(X, VEC_CLASSID, 5);
8753fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff);
87543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
87552a16baeaSToby Isaac }
87562a16baeaSToby Isaac 
8757df0b854cSToby Isaac /*@C
8758bb7acecfSBarry Smith   DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors
8759502a2867SDave May 
8760502a2867SDave May   Not Collective
8761502a2867SDave May 
8762502a2867SDave May   Input Parameter:
8763bb7acecfSBarry Smith . dm - The `DM`
8764502a2867SDave May 
87650a19bb7dSprj-   Output Parameters:
87660a19bb7dSprj- + nranks - the number of neighbours
87670a19bb7dSprj- - ranks  - the neighbors ranks
8768502a2867SDave May 
87699bdbcad8SBarry Smith   Level: beginner
87709bdbcad8SBarry Smith 
8771bb7acecfSBarry Smith   Note:
8772bb7acecfSBarry Smith   Do not free the array, it is freed when the `DM` is destroyed.
8773502a2867SDave May 
87741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()`
8775502a2867SDave May @*/
8776d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[])
8777d71ae5a4SJacob Faibussowitsch {
8778502a2867SDave May   PetscFunctionBegin;
8779502a2867SDave May   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8780fa1e479aSStefano Zampini   PetscUseTypeMethod(dm, getneighbors, nranks, ranks);
87813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8782502a2867SDave May }
8783502a2867SDave May 
8784531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */
8785531c7667SBarry Smith 
8786531c7667SBarry Smith /*
8787531c7667SBarry Smith     Converts the input vector to a ghosted vector and then calls the standard coloring code.
87882b6f951bSStefano Zampini     This must be a different function because it requires DM which is not defined in the Mat library
8789531c7667SBarry Smith */
879066976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx)
8791d71ae5a4SJacob Faibussowitsch {
8792531c7667SBarry Smith   PetscFunctionBegin;
8793531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8794531c7667SBarry Smith     Vec x1local;
8795531c7667SBarry Smith     DM  dm;
87969566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
87977a8be351SBarry Smith     PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM");
87989566063dSJacob Faibussowitsch     PetscCall(DMGetLocalVector(dm, &x1local));
87999566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local));
88009566063dSJacob Faibussowitsch     PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local));
8801531c7667SBarry Smith     x1 = x1local;
8802531c7667SBarry Smith   }
88039566063dSJacob Faibussowitsch   PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx));
8804531c7667SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
8805531c7667SBarry Smith     DM dm;
88069566063dSJacob Faibussowitsch     PetscCall(MatGetDM(J, &dm));
88079566063dSJacob Faibussowitsch     PetscCall(DMRestoreLocalVector(dm, &x1));
8808531c7667SBarry Smith   }
88093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8810531c7667SBarry Smith }
8811531c7667SBarry Smith 
8812531c7667SBarry Smith /*@
8813bb7acecfSBarry Smith   MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring
8814531c7667SBarry Smith 
8815a4e35b19SJacob Faibussowitsch   Input Parameters:
8816a4e35b19SJacob Faibussowitsch + coloring   - The matrix to get the `DM` from
8817a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object
8818531c7667SBarry Smith 
88199bdbcad8SBarry Smith   Level: advanced
88209bdbcad8SBarry Smith 
882173ff1848SBarry Smith   Developer Note:
882273ff1848SBarry Smith   This routine exists because the PETSc `Mat` library does not know about the `DM` objects
8823531c7667SBarry Smith 
88241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType`
8825531c7667SBarry Smith @*/
8826d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring)
8827d71ae5a4SJacob Faibussowitsch {
8828531c7667SBarry Smith   PetscFunctionBegin;
8829531c7667SBarry Smith   coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM;
88303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8831531c7667SBarry Smith }
88328320bc6fSPatrick Sanan 
88338320bc6fSPatrick Sanan /*@
8834bb7acecfSBarry Smith   DMGetCompatibility - determine if two `DM`s are compatible
88358320bc6fSPatrick Sanan 
88368320bc6fSPatrick Sanan   Collective
88378320bc6fSPatrick Sanan 
88388320bc6fSPatrick Sanan   Input Parameters:
8839bb7acecfSBarry Smith + dm1 - the first `DM`
8840bb7acecfSBarry Smith - dm2 - the second `DM`
88418320bc6fSPatrick Sanan 
88428320bc6fSPatrick Sanan   Output Parameters:
8843bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible
8844bb7acecfSBarry Smith - set        - whether or not the compatible value was actually determined and set
88458320bc6fSPatrick Sanan 
884620f4b53cSBarry Smith   Level: advanced
884720f4b53cSBarry Smith 
88488320bc6fSPatrick Sanan   Notes:
8849bb7acecfSBarry Smith   Two `DM`s are deemed compatible if they represent the same parallel decomposition
88503d862458SPatrick Sanan   of the same topology. This implies that the section (field data) on one
88518320bc6fSPatrick Sanan   "makes sense" with respect to the topology and parallel decomposition of the other.
8852bb7acecfSBarry Smith   Loosely speaking, compatible `DM`s represent the same domain and parallel
88533d862458SPatrick Sanan   decomposition, but hold different data.
88548320bc6fSPatrick Sanan 
88558320bc6fSPatrick Sanan   Typically, one would confirm compatibility if intending to simultaneously iterate
8856bb7acecfSBarry Smith   over a pair of vectors obtained from different `DM`s.
88578320bc6fSPatrick Sanan 
8858bb7acecfSBarry Smith   For example, two `DMDA` objects are compatible if they have the same local
88598320bc6fSPatrick Sanan   and global sizes and the same stencil width. They can have different numbers
88608320bc6fSPatrick Sanan   of degrees of freedom per node. Thus, one could use the node numbering from
8861bb7acecfSBarry Smith   either `DM` in bounds for a loop over vectors derived from either `DM`.
88628320bc6fSPatrick Sanan 
8863bb7acecfSBarry Smith   Consider the operation of summing data living on a 2-dof `DMDA` to data living
8864bb7acecfSBarry Smith   on a 1-dof `DMDA`, which should be compatible, as in the following snippet.
88658320bc6fSPatrick Sanan .vb
88668320bc6fSPatrick Sanan   ...
88679566063dSJacob Faibussowitsch   PetscCall(DMGetCompatibility(da1,da2,&compatible,&set));
88688320bc6fSPatrick Sanan   if (set && compatible)  {
88699566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1));
88709566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2));
88719566063dSJacob Faibussowitsch     PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL));
88728320bc6fSPatrick Sanan     for (j=y; j<y+n; ++j) {
88738320bc6fSPatrick Sanan       for (i=x; i<x+m, ++i) {
88748320bc6fSPatrick Sanan         arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1];
88758320bc6fSPatrick Sanan       }
88768320bc6fSPatrick Sanan     }
88779566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1));
88789566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2));
88798320bc6fSPatrick Sanan   } else {
88808320bc6fSPatrick Sanan     SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible");
88818320bc6fSPatrick Sanan   }
88828320bc6fSPatrick Sanan   ...
88838320bc6fSPatrick Sanan .ve
88848320bc6fSPatrick Sanan 
8885bb7acecfSBarry Smith   Checking compatibility might be expensive for a given implementation of `DM`,
88868320bc6fSPatrick Sanan   or might be impossible to unambiguously confirm or deny. For this reason,
88878320bc6fSPatrick Sanan   this function may decline to determine compatibility, and hence users should
88888320bc6fSPatrick Sanan   always check the "set" output parameter.
88898320bc6fSPatrick Sanan 
8890bb7acecfSBarry Smith   A `DM` is always compatible with itself.
88918320bc6fSPatrick Sanan 
8892bb7acecfSBarry Smith   In the current implementation, `DM`s which live on "unequal" communicators
88938320bc6fSPatrick Sanan   (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed
88948320bc6fSPatrick Sanan   incompatible.
88958320bc6fSPatrick Sanan 
88968320bc6fSPatrick Sanan   This function is labeled "Collective," as information about all subdomains
8897bb7acecfSBarry Smith   is required on each rank. However, in `DM` implementations which store all this
88988320bc6fSPatrick Sanan   information locally, this function may be merely "Logically Collective".
88998320bc6fSPatrick Sanan 
890073ff1848SBarry Smith   Developer Note:
8901bb7acecfSBarry Smith   Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B
89023d862458SPatrick Sanan   iff B is compatible with A. Thus, this function checks the implementations
8903a5bc1bf3SBarry Smith   of both dm and dmc (if they are of different types), attempting to determine
8904bb7acecfSBarry Smith   compatibility. It is left to `DM` implementers to ensure that symmetry is
89058320bc6fSPatrick Sanan   preserved. The simplest way to do this is, when implementing type-specific
89063d862458SPatrick Sanan   logic for this function, is to check for existing logic in the implementation
8907bb7acecfSBarry Smith   of other `DM` types and let *set = PETSC_FALSE if found.
89088320bc6fSPatrick Sanan 
89091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()`
89108320bc6fSPatrick Sanan @*/
8911d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set)
8912d71ae5a4SJacob Faibussowitsch {
89138320bc6fSPatrick Sanan   PetscMPIInt compareResult;
89148320bc6fSPatrick Sanan   DMType      type, type2;
89158320bc6fSPatrick Sanan   PetscBool   sameType;
89168320bc6fSPatrick Sanan 
89178320bc6fSPatrick Sanan   PetscFunctionBegin;
8918a5bc1bf3SBarry Smith   PetscValidHeaderSpecific(dm1, DM_CLASSID, 1);
89198320bc6fSPatrick Sanan   PetscValidHeaderSpecific(dm2, DM_CLASSID, 2);
89208320bc6fSPatrick Sanan 
89218320bc6fSPatrick Sanan   /* Declare a DM compatible with itself */
8922a5bc1bf3SBarry Smith   if (dm1 == dm2) {
89238320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
89248320bc6fSPatrick Sanan     *compatible = PETSC_TRUE;
89253ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
89268320bc6fSPatrick Sanan   }
89278320bc6fSPatrick Sanan 
89288320bc6fSPatrick Sanan   /* Declare a DM incompatible with a DM that lives on an "unequal"
89298320bc6fSPatrick Sanan      communicator. Note that this does not preclude compatibility with
89308320bc6fSPatrick Sanan      DMs living on "congruent" or "similar" communicators, but this must be
89318320bc6fSPatrick Sanan      determined by the implementation-specific logic */
89329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult));
89338320bc6fSPatrick Sanan   if (compareResult == MPI_UNEQUAL) {
89348320bc6fSPatrick Sanan     *set        = PETSC_TRUE;
89358320bc6fSPatrick Sanan     *compatible = PETSC_FALSE;
89363ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
89378320bc6fSPatrick Sanan   }
89388320bc6fSPatrick Sanan 
89398320bc6fSPatrick Sanan   /* Pass to the implementation-specific routine, if one exists. */
8940a5bc1bf3SBarry Smith   if (dm1->ops->getcompatibility) {
8941dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set);
89423ba16761SJacob Faibussowitsch     if (*set) PetscFunctionReturn(PETSC_SUCCESS);
89438320bc6fSPatrick Sanan   }
89448320bc6fSPatrick Sanan 
8945a5bc1bf3SBarry Smith   /* If dm1 and dm2 are of different types, then attempt to check compatibility
89468320bc6fSPatrick Sanan      with an implementation of this function from dm2 */
89479566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm1, &type));
89489566063dSJacob Faibussowitsch   PetscCall(DMGetType(dm2, &type2));
89499566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(type, type2, &sameType));
89508320bc6fSPatrick Sanan   if (!sameType && dm2->ops->getcompatibility) {
8951dbbe0bcdSBarry Smith     PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */
89528320bc6fSPatrick Sanan   } else {
89538320bc6fSPatrick Sanan     *set = PETSC_FALSE;
89548320bc6fSPatrick Sanan   }
89553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
89568320bc6fSPatrick Sanan }
8957c0f0dcc3SMatthew G. Knepley 
8958c0f0dcc3SMatthew G. Knepley /*@C
8959bb7acecfSBarry Smith   DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance.
8960c0f0dcc3SMatthew G. Knepley 
896120f4b53cSBarry Smith   Logically Collective
8962c0f0dcc3SMatthew G. Knepley 
8963c0f0dcc3SMatthew G. Knepley   Input Parameters:
896460225df5SJacob Faibussowitsch + dm             - the `DM`
8965c0f0dcc3SMatthew G. Knepley . f              - the monitor function
896620f4b53cSBarry Smith . mctx           - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired)
896749abdd8aSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`), see `PetscCtxDestroyFn` for the calling sequence
8968c0f0dcc3SMatthew G. Knepley 
896920f4b53cSBarry Smith   Options Database Key:
897060225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but
8971c0f0dcc3SMatthew G. Knepley                        does not cancel those set via the options database.
8972c0f0dcc3SMatthew G. Knepley 
89739bdbcad8SBarry Smith   Level: intermediate
89749bdbcad8SBarry Smith 
8975bb7acecfSBarry Smith   Note:
8976c0f0dcc3SMatthew G. Knepley   Several different monitoring routines may be set by calling
8977bb7acecfSBarry Smith   `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the
8978c0f0dcc3SMatthew G. Knepley   order in which they were set.
8979c0f0dcc3SMatthew G. Knepley 
898073ff1848SBarry Smith   Fortran Note:
8981bb7acecfSBarry Smith   Only a single monitor function can be set for each `DM` object
8982bb7acecfSBarry Smith 
898373ff1848SBarry Smith   Developer Note:
8984bb7acecfSBarry Smith   This API has a generic name but seems specific to a very particular aspect of the use of `DM`
8985c0f0dcc3SMatthew G. Knepley 
898649abdd8aSBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()`, `PetscCtxDestroyFn`
8987c0f0dcc3SMatthew G. Knepley @*/
898849abdd8aSBarry Smith PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscCtxDestroyFn *monitordestroy)
8989d71ae5a4SJacob Faibussowitsch {
8990c0f0dcc3SMatthew G. Knepley   PetscInt m;
8991c0f0dcc3SMatthew G. Knepley 
8992c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
8993c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
8994c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
8995c0f0dcc3SMatthew G. Knepley     PetscBool identical;
8996c0f0dcc3SMatthew G. Knepley 
89979566063dSJacob Faibussowitsch     PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void))f, mctx, monitordestroy, (PetscErrorCode (*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical));
89983ba16761SJacob Faibussowitsch     if (identical) PetscFunctionReturn(PETSC_SUCCESS);
8999c0f0dcc3SMatthew G. Knepley   }
90007a8be351SBarry Smith   PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set");
9001c0f0dcc3SMatthew G. Knepley   dm->monitor[dm->numbermonitors]          = f;
9002c0f0dcc3SMatthew G. Knepley   dm->monitordestroy[dm->numbermonitors]   = monitordestroy;
9003835f2295SStefano Zampini   dm->monitorcontext[dm->numbermonitors++] = mctx;
90043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9005c0f0dcc3SMatthew G. Knepley }
9006c0f0dcc3SMatthew G. Knepley 
9007c0f0dcc3SMatthew G. Knepley /*@
9008bb7acecfSBarry Smith   DMMonitorCancel - Clears all the monitor functions for a `DM` object.
9009c0f0dcc3SMatthew G. Knepley 
901020f4b53cSBarry Smith   Logically Collective
9011c0f0dcc3SMatthew G. Knepley 
9012c0f0dcc3SMatthew G. Knepley   Input Parameter:
9013c0f0dcc3SMatthew G. Knepley . dm - the DM
9014c0f0dcc3SMatthew G. Knepley 
9015c0f0dcc3SMatthew G. Knepley   Options Database Key:
9016c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired
9017bb7acecfSBarry Smith   into a code by calls to `DMonitorSet()`, but does not cancel those
9018c0f0dcc3SMatthew G. Knepley   set via the options database
9019c0f0dcc3SMatthew G. Knepley 
90209bdbcad8SBarry Smith   Level: intermediate
90219bdbcad8SBarry Smith 
9022bb7acecfSBarry Smith   Note:
9023bb7acecfSBarry Smith   There is no way to clear one specific monitor from a `DM` object.
9024c0f0dcc3SMatthew G. Knepley 
90251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()`
9026c0f0dcc3SMatthew G. Knepley @*/
9027d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm)
9028d71ae5a4SJacob Faibussowitsch {
9029c0f0dcc3SMatthew G. Knepley   PetscInt m;
9030c0f0dcc3SMatthew G. Knepley 
9031c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
9032c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9033c0f0dcc3SMatthew G. Knepley   for (m = 0; m < dm->numbermonitors; ++m) {
90349566063dSJacob Faibussowitsch     if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m]));
9035c0f0dcc3SMatthew G. Knepley   }
9036c0f0dcc3SMatthew G. Knepley   dm->numbermonitors = 0;
90373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9038c0f0dcc3SMatthew G. Knepley }
9039c0f0dcc3SMatthew G. Knepley 
9040c0f0dcc3SMatthew G. Knepley /*@C
9041c0f0dcc3SMatthew G. Knepley   DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user
9042c0f0dcc3SMatthew G. Knepley 
904320f4b53cSBarry Smith   Collective
9044c0f0dcc3SMatthew G. Knepley 
9045c0f0dcc3SMatthew G. Knepley   Input Parameters:
9046bb7acecfSBarry Smith + dm           - `DM` object you wish to monitor
9047c0f0dcc3SMatthew G. Knepley . name         - the monitor type one is seeking
9048c0f0dcc3SMatthew G. Knepley . help         - message indicating what monitoring is done
9049c0f0dcc3SMatthew G. Knepley . manual       - manual page for the monitor
905049abdd8aSBarry Smith . monitor      - the monitor function, this must use a `PetscViewerFormat` as its context
9051bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects
9052c0f0dcc3SMatthew G. Knepley 
9053c0f0dcc3SMatthew G. Knepley   Output Parameter:
9054c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created
9055c0f0dcc3SMatthew G. Knepley 
9056c0f0dcc3SMatthew G. Knepley   Level: developer
9057c0f0dcc3SMatthew G. Knepley 
9058648c30bcSBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsCreateViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`,
9059db781477SPatrick Sanan           `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()`
906060225df5SJacob Faibussowitsch           `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`,
9061db781477SPatrick Sanan           `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`,
9062c2e3fba1SPatrick Sanan           `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`,
9063db781477SPatrick Sanan           `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`,
9064bb7acecfSBarry Smith           `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()`
9065c0f0dcc3SMatthew G. Knepley @*/
9066d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg)
9067d71ae5a4SJacob Faibussowitsch {
9068c0f0dcc3SMatthew G. Knepley   PetscViewer       viewer;
9069c0f0dcc3SMatthew G. Knepley   PetscViewerFormat format;
9070c0f0dcc3SMatthew G. Knepley 
9071c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
9072c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9073648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg));
9074c0f0dcc3SMatthew G. Knepley   if (*flg) {
9075c0f0dcc3SMatthew G. Knepley     PetscViewerAndFormat *vf;
9076c0f0dcc3SMatthew G. Knepley 
90779566063dSJacob Faibussowitsch     PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf));
9078648c30bcSBarry Smith     PetscCall(PetscViewerDestroy(&viewer));
90799566063dSJacob Faibussowitsch     if (monitorsetup) PetscCall((*monitorsetup)(dm, vf));
9080835f2295SStefano Zampini     PetscCall(DMMonitorSet(dm, monitor, vf, (PetscCtxDestroyFn *)PetscViewerAndFormatDestroy));
9081c0f0dcc3SMatthew G. Knepley   }
90823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9083c0f0dcc3SMatthew G. Knepley }
9084c0f0dcc3SMatthew G. Knepley 
9085c0f0dcc3SMatthew G. Knepley /*@
9086c0f0dcc3SMatthew G. Knepley   DMMonitor - runs the user provided monitor routines, if they exist
9087c0f0dcc3SMatthew G. Knepley 
908820f4b53cSBarry Smith   Collective
9089c0f0dcc3SMatthew G. Knepley 
90902fe279fdSBarry Smith   Input Parameter:
9091bb7acecfSBarry Smith . dm - The `DM`
9092c0f0dcc3SMatthew G. Knepley 
9093c0f0dcc3SMatthew G. Knepley   Level: developer
9094c0f0dcc3SMatthew G. Knepley 
909573ff1848SBarry Smith   Developer Note:
9096a4e35b19SJacob Faibussowitsch   Note should indicate when during the life of the `DM` the monitor is run. It appears to be
9097a4e35b19SJacob Faibussowitsch   related to the discretization process seems rather specialized since some `DM` have no
9098a4e35b19SJacob Faibussowitsch   concept of discretization.
9099bb7acecfSBarry Smith 
91001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`
9101c0f0dcc3SMatthew G. Knepley @*/
9102d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm)
9103d71ae5a4SJacob Faibussowitsch {
9104c0f0dcc3SMatthew G. Knepley   PetscInt m;
9105c0f0dcc3SMatthew G. Knepley 
9106c0f0dcc3SMatthew G. Knepley   PetscFunctionBegin;
91073ba16761SJacob Faibussowitsch   if (!dm) PetscFunctionReturn(PETSC_SUCCESS);
9108c0f0dcc3SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
910948a46eb9SPierre Jolivet   for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m]));
91103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9111c0f0dcc3SMatthew G. Knepley }
91122e4af2aeSMatthew G. Knepley 
91132e4af2aeSMatthew G. Knepley /*@
9114bb7acecfSBarry Smith   DMComputeError - Computes the error assuming the user has provided the exact solution functions
91152e4af2aeSMatthew G. Knepley 
911620f4b53cSBarry Smith   Collective
91172e4af2aeSMatthew G. Knepley 
91182e4af2aeSMatthew G. Knepley   Input Parameters:
9119bb7acecfSBarry Smith + dm  - The `DM`
91206b867d5aSJose E. Roman - sol - The solution vector
91212e4af2aeSMatthew G. Knepley 
91226b867d5aSJose E. Roman   Input/Output Parameter:
912320f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output
91246b867d5aSJose E. Roman            contains the error in each field
91256b867d5aSJose E. Roman 
91266b867d5aSJose E. Roman   Output Parameter:
912720f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`)
912820f4b53cSBarry Smith 
912920f4b53cSBarry Smith   Level: developer
91302e4af2aeSMatthew G. Knepley 
9131bb7acecfSBarry Smith   Note:
9132bb7acecfSBarry Smith   The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`.
91332e4af2aeSMatthew G. Knepley 
91341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()`
91352e4af2aeSMatthew G. Knepley @*/
9136d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec)
9137d71ae5a4SJacob Faibussowitsch {
91382e4af2aeSMatthew G. Knepley   PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *);
91392e4af2aeSMatthew G. Knepley   void    **ctxs;
91402e4af2aeSMatthew G. Knepley   PetscReal time;
91412e4af2aeSMatthew G. Knepley   PetscInt  Nf, f, Nds, s;
91422e4af2aeSMatthew G. Knepley 
91432e4af2aeSMatthew G. Knepley   PetscFunctionBegin;
91449566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &Nf));
91459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs));
91469566063dSJacob Faibussowitsch   PetscCall(DMGetNumDS(dm, &Nds));
91472e4af2aeSMatthew G. Knepley   for (s = 0; s < Nds; ++s) {
91482e4af2aeSMatthew G. Knepley     PetscDS         ds;
91492e4af2aeSMatthew G. Knepley     DMLabel         label;
91502e4af2aeSMatthew G. Knepley     IS              fieldIS;
91512e4af2aeSMatthew G. Knepley     const PetscInt *fields;
91522e4af2aeSMatthew G. Knepley     PetscInt        dsNf;
91532e4af2aeSMatthew G. Knepley 
915407218a29SMatthew G. Knepley     PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL));
91559566063dSJacob Faibussowitsch     PetscCall(PetscDSGetNumFields(ds, &dsNf));
91569566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields));
91572e4af2aeSMatthew G. Knepley     for (f = 0; f < dsNf; ++f) {
91582e4af2aeSMatthew G. Knepley       const PetscInt field = fields[f];
91599566063dSJacob Faibussowitsch       PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field]));
91602e4af2aeSMatthew G. Knepley     }
91619566063dSJacob Faibussowitsch     if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields));
91622e4af2aeSMatthew G. Knepley   }
9163ad540459SPierre Jolivet   for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f);
91649566063dSJacob Faibussowitsch   PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time));
91659566063dSJacob Faibussowitsch   if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors));
91662e4af2aeSMatthew G. Knepley   if (errorVec) {
91672e4af2aeSMatthew G. Knepley     DM             edm;
91682e4af2aeSMatthew G. Knepley     DMPolytopeType ct;
91692e4af2aeSMatthew G. Knepley     PetscBool      simplex;
91702e4af2aeSMatthew G. Knepley     PetscInt       dim, cStart, Nf;
91712e4af2aeSMatthew G. Knepley 
91729566063dSJacob Faibussowitsch     PetscCall(DMClone(dm, &edm));
91739566063dSJacob Faibussowitsch     PetscCall(DMGetDimension(edm, &dim));
91749566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL));
91759566063dSJacob Faibussowitsch     PetscCall(DMPlexGetCellType(dm, cStart, &ct));
91762e4af2aeSMatthew G. Knepley     simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE;
91779566063dSJacob Faibussowitsch     PetscCall(DMGetNumFields(dm, &Nf));
91782e4af2aeSMatthew G. Knepley     for (f = 0; f < Nf; ++f) {
91792e4af2aeSMatthew G. Knepley       PetscFE         fe, efe;
91802e4af2aeSMatthew G. Knepley       PetscQuadrature q;
91812e4af2aeSMatthew G. Knepley       const char     *name;
91822e4af2aeSMatthew G. Knepley 
91839566063dSJacob Faibussowitsch       PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
91849566063dSJacob Faibussowitsch       PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe));
91859566063dSJacob Faibussowitsch       PetscCall(PetscObjectGetName((PetscObject)fe, &name));
91869566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)efe, name));
91879566063dSJacob Faibussowitsch       PetscCall(PetscFEGetQuadrature(fe, &q));
91889566063dSJacob Faibussowitsch       PetscCall(PetscFESetQuadrature(efe, q));
91899566063dSJacob Faibussowitsch       PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe));
91909566063dSJacob Faibussowitsch       PetscCall(PetscFEDestroy(&efe));
91912e4af2aeSMatthew G. Knepley     }
91929566063dSJacob Faibussowitsch     PetscCall(DMCreateDS(edm));
91932e4af2aeSMatthew G. Knepley 
91949566063dSJacob Faibussowitsch     PetscCall(DMCreateGlobalVector(edm, errorVec));
91959566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error"));
91969566063dSJacob Faibussowitsch     PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec));
91979566063dSJacob Faibussowitsch     PetscCall(DMDestroy(&edm));
91982e4af2aeSMatthew G. Knepley   }
91999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(exactSol, ctxs));
92003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92012e4af2aeSMatthew G. Knepley }
92029a2a23afSMatthew G. Knepley 
92039a2a23afSMatthew G. Knepley /*@
9204bb7acecfSBarry Smith   DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM`
92059a2a23afSMatthew G. Knepley 
920620f4b53cSBarry Smith   Not Collective
92079a2a23afSMatthew G. Knepley 
92089a2a23afSMatthew G. Knepley   Input Parameter:
9209bb7acecfSBarry Smith . dm - The `DM`
92109a2a23afSMatthew G. Knepley 
92119a2a23afSMatthew G. Knepley   Output Parameter:
9212a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors
92139a2a23afSMatthew G. Knepley 
92149a2a23afSMatthew G. Knepley   Level: advanced
92159a2a23afSMatthew G. Knepley 
9216e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`
92179a2a23afSMatthew G. Knepley @*/
9218d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux)
9219d71ae5a4SJacob Faibussowitsch {
92209a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92219a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92229566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux));
92233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92249a2a23afSMatthew G. Knepley }
92259a2a23afSMatthew G. Knepley 
92269a2a23afSMatthew G. Knepley /*@
9227ac17215fSMatthew G. Knepley   DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part
92289a2a23afSMatthew G. Knepley 
922920f4b53cSBarry Smith   Not Collective
92309a2a23afSMatthew G. Knepley 
92319a2a23afSMatthew G. Knepley   Input Parameters:
9232bb7acecfSBarry Smith + dm    - The `DM`
9233bb7acecfSBarry Smith . label - The `DMLabel`
9234ac17215fSMatthew G. Knepley . value - The label value indicating the region
9235ac17215fSMatthew G. Knepley - part  - The equation part, or 0 if unused
92369a2a23afSMatthew G. Knepley 
92379a2a23afSMatthew G. Knepley   Output Parameter:
9238bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data
92399a2a23afSMatthew G. Knepley 
92409bdbcad8SBarry Smith   Level: advanced
92419bdbcad8SBarry Smith 
9242bb7acecfSBarry Smith   Note:
9243bb7acecfSBarry Smith   If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well.
924404c51a94SMatthew G. Knepley 
9245e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()`
92469a2a23afSMatthew G. Knepley @*/
9247d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux)
9248d71ae5a4SJacob Faibussowitsch {
9249ac17215fSMatthew G. Knepley   PetscHashAuxKey key, wild = {NULL, 0, 0};
925004c51a94SMatthew G. Knepley   PetscBool       has;
92519a2a23afSMatthew G. Knepley 
92529a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92539a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92549a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
92559a2a23afSMatthew G. Knepley   key.label = label;
92569a2a23afSMatthew G. Knepley   key.value = value;
9257ac17215fSMatthew G. Knepley   key.part  = part;
92589566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxHas(dm->auxData, key, &has));
92599566063dSJacob Faibussowitsch   if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux));
92609566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux));
92613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92629a2a23afSMatthew G. Knepley }
92639a2a23afSMatthew G. Knepley 
92649a2a23afSMatthew G. Knepley /*@
9265bb7acecfSBarry Smith   DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part
92669a2a23afSMatthew G. Knepley 
926720f4b53cSBarry Smith   Not Collective because auxiliary vectors are not parallel
92689a2a23afSMatthew G. Knepley 
92699a2a23afSMatthew G. Knepley   Input Parameters:
9270bb7acecfSBarry Smith + dm    - The `DM`
9271bb7acecfSBarry Smith . label - The `DMLabel`
92729a2a23afSMatthew G. Knepley . value - The label value indicating the region
9273ac17215fSMatthew G. Knepley . part  - The equation part, or 0 if unused
9274bb7acecfSBarry Smith - aux   - The `Vec` holding auxiliary field data
92759a2a23afSMatthew G. Knepley 
92769a2a23afSMatthew G. Knepley   Level: advanced
92779a2a23afSMatthew G. Knepley 
9278e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()`
92799a2a23afSMatthew G. Knepley @*/
9280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux)
9281d71ae5a4SJacob Faibussowitsch {
92829a2a23afSMatthew G. Knepley   Vec             old;
92839a2a23afSMatthew G. Knepley   PetscHashAuxKey key;
92849a2a23afSMatthew G. Knepley 
92859a2a23afSMatthew G. Knepley   PetscFunctionBegin;
92869a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
92879a2a23afSMatthew G. Knepley   if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2);
92889a2a23afSMatthew G. Knepley   key.label = label;
92899a2a23afSMatthew G. Knepley   key.value = value;
9290ac17215fSMatthew G. Knepley   key.part  = part;
92919566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGet(dm->auxData, key, &old));
92929566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)aux));
92939566063dSJacob Faibussowitsch   if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key));
92949566063dSJacob Faibussowitsch   else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux));
9295d705d0eaSStefano Zampini   PetscCall(VecDestroy(&old));
92963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
92979a2a23afSMatthew G. Knepley }
92989a2a23afSMatthew G. Knepley 
9299cc4c1da9SBarry Smith /*@
9300bb7acecfSBarry Smith   DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM`
93019a2a23afSMatthew G. Knepley 
930220f4b53cSBarry Smith   Not Collective
93039a2a23afSMatthew G. Knepley 
93049a2a23afSMatthew G. Knepley   Input Parameter:
9305bb7acecfSBarry Smith . dm - The `DM`
93069a2a23afSMatthew G. Knepley 
93079a2a23afSMatthew G. Knepley   Output Parameters:
9308bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec`
9309bb7acecfSBarry Smith . values - The label values for each `Vec`
9310bb7acecfSBarry Smith - parts  - The equation parts for each `Vec`
93119a2a23afSMatthew G. Knepley 
93129bdbcad8SBarry Smith   Level: advanced
93139bdbcad8SBarry Smith 
9314bb7acecfSBarry Smith   Note:
9315bb7acecfSBarry Smith   The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`.
93169a2a23afSMatthew G. Knepley 
9317e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()`
93189a2a23afSMatthew G. Knepley @*/
9319d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[])
9320d71ae5a4SJacob Faibussowitsch {
93219a2a23afSMatthew G. Knepley   PetscHashAuxKey *keys;
93229a2a23afSMatthew G. Knepley   PetscInt         n, i, off = 0;
93239a2a23afSMatthew G. Knepley 
93249a2a23afSMatthew G. Knepley   PetscFunctionBegin;
93259a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
93264f572ea9SToby Isaac   PetscAssertPointer(labels, 2);
93274f572ea9SToby Isaac   PetscAssertPointer(values, 3);
93284f572ea9SToby Isaac   PetscAssertPointer(parts, 4);
93299566063dSJacob Faibussowitsch   PetscCall(DMGetNumAuxiliaryVec(dm, &n));
93309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &keys));
93319566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys));
93329371c9d4SSatish Balay   for (i = 0; i < n; ++i) {
93339371c9d4SSatish Balay     labels[i] = keys[i].label;
93349371c9d4SSatish Balay     values[i] = keys[i].value;
93359371c9d4SSatish Balay     parts[i]  = keys[i].part;
93369371c9d4SSatish Balay   }
93379566063dSJacob Faibussowitsch   PetscCall(PetscFree(keys));
93383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
93399a2a23afSMatthew G. Knepley }
93409a2a23afSMatthew G. Knepley 
93419a2a23afSMatthew G. Knepley /*@
9342bb7acecfSBarry Smith   DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM`
93439a2a23afSMatthew G. Knepley 
934420f4b53cSBarry Smith   Not Collective
93459a2a23afSMatthew G. Knepley 
93469a2a23afSMatthew G. Knepley   Input Parameter:
9347bb7acecfSBarry Smith . dm - The `DM`
93489a2a23afSMatthew G. Knepley 
93499a2a23afSMatthew G. Knepley   Output Parameter:
9350bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data
93519a2a23afSMatthew G. Knepley 
93529a2a23afSMatthew G. Knepley   Level: advanced
93539a2a23afSMatthew G. Knepley 
9354bb7acecfSBarry Smith   Note:
9355bb7acecfSBarry Smith   This is a shallow copy of the auxiliary vectors
9356bb7acecfSBarry Smith 
9357e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
93589a2a23afSMatthew G. Knepley @*/
9359d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew)
9360d71ae5a4SJacob Faibussowitsch {
93619a2a23afSMatthew G. Knepley   PetscFunctionBegin;
93629a2a23afSMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9363d705d0eaSStefano Zampini   PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2);
9364d705d0eaSStefano Zampini   if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS);
9365e4d5475eSStefano Zampini   PetscCall(DMClearAuxiliaryVec(dmNew));
9366e4d5475eSStefano Zampini 
9367e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dmNew->auxData));
93689566063dSJacob Faibussowitsch   PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData));
9369d705d0eaSStefano Zampini   {
9370d705d0eaSStefano Zampini     Vec     *auxData;
9371d705d0eaSStefano Zampini     PetscInt n, i, off = 0;
9372d705d0eaSStefano Zampini 
9373d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n));
9374d705d0eaSStefano Zampini     PetscCall(PetscMalloc1(n, &auxData));
9375d705d0eaSStefano Zampini     PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData));
9376d705d0eaSStefano Zampini     for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i]));
9377d705d0eaSStefano Zampini     PetscCall(PetscFree(auxData));
9378e4d5475eSStefano Zampini   }
9379e4d5475eSStefano Zampini   PetscFunctionReturn(PETSC_SUCCESS);
9380e4d5475eSStefano Zampini }
9381e4d5475eSStefano Zampini 
9382e4d5475eSStefano Zampini /*@
9383e4d5475eSStefano Zampini   DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one
9384e4d5475eSStefano Zampini 
9385e4d5475eSStefano Zampini   Not Collective
9386e4d5475eSStefano Zampini 
9387e4d5475eSStefano Zampini   Input Parameter:
9388e4d5475eSStefano Zampini . dm - The `DM`
9389e4d5475eSStefano Zampini 
9390e4d5475eSStefano Zampini   Level: advanced
9391e4d5475eSStefano Zampini 
9392e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`
9393e4d5475eSStefano Zampini @*/
9394e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm)
9395e4d5475eSStefano Zampini {
9396e4d5475eSStefano Zampini   Vec     *auxData;
9397e4d5475eSStefano Zampini   PetscInt n, i, off = 0;
9398e4d5475eSStefano Zampini 
9399e4d5475eSStefano Zampini   PetscFunctionBegin;
9400e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetSize(dm->auxData, &n));
9401d705d0eaSStefano Zampini   PetscCall(PetscMalloc1(n, &auxData));
9402e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData));
9403d705d0eaSStefano Zampini   for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i]));
9404d705d0eaSStefano Zampini   PetscCall(PetscFree(auxData));
9405e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxDestroy(&dm->auxData));
9406e4d5475eSStefano Zampini   PetscCall(PetscHMapAuxCreate(&dm->auxData));
94073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
94089a2a23afSMatthew G. Knepley }
9409b5a892a1SMatthew G. Knepley 
9410cc4c1da9SBarry Smith /*@
9411bb7acecfSBarry Smith   DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9412b5a892a1SMatthew G. Knepley 
941320f4b53cSBarry Smith   Not Collective
9414b5a892a1SMatthew G. Knepley 
9415b5a892a1SMatthew G. Knepley   Input Parameters:
9416bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9417b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9418b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9419b5a892a1SMatthew G. Knepley 
9420b5a892a1SMatthew G. Knepley   Output Parameters:
9421bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9422b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9423b5a892a1SMatthew G. Knepley 
9424b5a892a1SMatthew G. Knepley   Level: advanced
9425b5a892a1SMatthew G. Knepley 
9426bb7acecfSBarry Smith   Note:
9427bb7acecfSBarry Smith   An arrangement is a face order combined with an orientation for each face
9428bb7acecfSBarry Smith 
942985036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9430bb7acecfSBarry Smith   that labels each arrangement (face ordering plus orientation for each face).
9431bb7acecfSBarry Smith 
9432bb7acecfSBarry Smith   See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement
9433bb7acecfSBarry Smith 
94341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()`
9435b5a892a1SMatthew G. Knepley @*/
9436d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found)
9437d71ae5a4SJacob Faibussowitsch {
9438b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetConeSize(ct);
943985036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9440b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9441b5a892a1SMatthew G. Knepley 
9442b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94439371c9d4SSatish Balay   if (!nO) {
94449371c9d4SSatish Balay     *ornt  = 0;
94459371c9d4SSatish Balay     *found = PETSC_TRUE;
94463ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
94479371c9d4SSatish Balay   }
9448b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
944985036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o);
9450b5a892a1SMatthew G. Knepley 
94519371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
94529371c9d4SSatish Balay       if (sourceCone[arr[c * 2]] != targetCone[c]) break;
94539371c9d4SSatish Balay     if (c == cS) {
94549371c9d4SSatish Balay       *ornt = o;
94559371c9d4SSatish Balay       break;
94569371c9d4SSatish Balay     }
9457b5a892a1SMatthew G. Knepley   }
9458b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
94593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9460b5a892a1SMatthew G. Knepley }
9461b5a892a1SMatthew G. Knepley 
9462cc4c1da9SBarry Smith /*@
9463bb7acecfSBarry Smith   DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement
9464b5a892a1SMatthew G. Knepley 
946520f4b53cSBarry Smith   Not Collective
9466b5a892a1SMatthew G. Knepley 
9467b5a892a1SMatthew G. Knepley   Input Parameters:
9468bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9469b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces
9470b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces
9471b5a892a1SMatthew G. Knepley 
94722fe279fdSBarry Smith   Output Parameter:
9473bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9474b5a892a1SMatthew G. Knepley 
9475b5a892a1SMatthew G. Knepley   Level: advanced
9476b5a892a1SMatthew G. Knepley 
9477bb7acecfSBarry Smith   Note:
9478bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found.
9479bb7acecfSBarry Smith 
948073ff1848SBarry Smith   Developer Note:
9481bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found
9482bb7acecfSBarry Smith 
94831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()`
9484b5a892a1SMatthew G. Knepley @*/
9485d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9486d71ae5a4SJacob Faibussowitsch {
9487b5a892a1SMatthew G. Knepley   PetscBool found;
9488b5a892a1SMatthew G. Knepley 
9489b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
94909566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found));
94917a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
94923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9493b5a892a1SMatthew G. Knepley }
9494b5a892a1SMatthew G. Knepley 
9495cc4c1da9SBarry Smith /*@
9496bb7acecfSBarry Smith   DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9497b5a892a1SMatthew G. Knepley 
949820f4b53cSBarry Smith   Not Collective
9499b5a892a1SMatthew G. Knepley 
9500b5a892a1SMatthew G. Knepley   Input Parameters:
9501bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9502b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices
9503b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices
9504b5a892a1SMatthew G. Knepley 
9505b5a892a1SMatthew G. Knepley   Output Parameters:
9506bb7acecfSBarry Smith + ornt  - The orientation (transformation) which will take the source arrangement to the target arrangement
9507b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found
9508b5a892a1SMatthew G. Knepley 
9509b5a892a1SMatthew G. Knepley   Level: advanced
9510b5a892a1SMatthew G. Knepley 
951173ff1848SBarry Smith   Notes:
9512bb7acecfSBarry Smith   An arrangement is a vertex order
9513bb7acecfSBarry Smith 
951485036b15SMatthew G. Knepley   Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2
9515bb7acecfSBarry Smith   that labels each arrangement (vertex ordering).
9516bb7acecfSBarry Smith 
9517bb7acecfSBarry Smith   See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement
9518bb7acecfSBarry Smith 
951985036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()`
9520b5a892a1SMatthew G. Knepley @*/
9521d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found)
9522d71ae5a4SJacob Faibussowitsch {
9523b5a892a1SMatthew G. Knepley   const PetscInt cS = DMPolytopeTypeGetNumVertices(ct);
952485036b15SMatthew G. Knepley   const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2;
9525b5a892a1SMatthew G. Knepley   PetscInt       o, c;
9526b5a892a1SMatthew G. Knepley 
9527b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
95289371c9d4SSatish Balay   if (!nO) {
95299371c9d4SSatish Balay     *ornt  = 0;
95309371c9d4SSatish Balay     *found = PETSC_TRUE;
95313ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
95329371c9d4SSatish Balay   }
9533b5a892a1SMatthew G. Knepley   for (o = -nO; o < nO; ++o) {
953485036b15SMatthew G. Knepley     const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o);
9535b5a892a1SMatthew G. Knepley 
95369371c9d4SSatish Balay     for (c = 0; c < cS; ++c)
95379371c9d4SSatish Balay       if (sourceVert[arr[c]] != targetVert[c]) break;
95389371c9d4SSatish Balay     if (c == cS) {
95399371c9d4SSatish Balay       *ornt = o;
95409371c9d4SSatish Balay       break;
95419371c9d4SSatish Balay     }
9542b5a892a1SMatthew G. Knepley   }
9543b5a892a1SMatthew G. Knepley   *found = o == nO ? PETSC_FALSE : PETSC_TRUE;
95443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9545b5a892a1SMatthew G. Knepley }
9546b5a892a1SMatthew G. Knepley 
9547cc4c1da9SBarry Smith /*@
9548bb7acecfSBarry Smith   DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement
9549b5a892a1SMatthew G. Knepley 
955020f4b53cSBarry Smith   Not Collective
9551b5a892a1SMatthew G. Knepley 
9552b5a892a1SMatthew G. Knepley   Input Parameters:
9553bb7acecfSBarry Smith + ct         - The `DMPolytopeType`
9554b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices
9555b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices
9556b5a892a1SMatthew G. Knepley 
95572fe279fdSBarry Smith   Output Parameter:
9558bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement
9559b5a892a1SMatthew G. Knepley 
9560b5a892a1SMatthew G. Knepley   Level: advanced
9561b5a892a1SMatthew G. Knepley 
9562bb7acecfSBarry Smith   Note:
9563bb7acecfSBarry Smith   This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible.
9564bb7acecfSBarry Smith 
956573ff1848SBarry Smith   Developer Note:
9566bb7acecfSBarry Smith   It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found
9567bb7acecfSBarry Smith 
95681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()`
9569b5a892a1SMatthew G. Knepley @*/
9570d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt)
9571d71ae5a4SJacob Faibussowitsch {
9572b5a892a1SMatthew G. Knepley   PetscBool found;
9573b5a892a1SMatthew G. Knepley 
9574b5a892a1SMatthew G. Knepley   PetscFunctionBegin;
95759566063dSJacob Faibussowitsch   PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found));
95767a8be351SBarry Smith   PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]);
95773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9578b5a892a1SMatthew G. Knepley }
9579012bc364SMatthew G. Knepley 
9580cc4c1da9SBarry Smith /*@
9581012bc364SMatthew G. Knepley   DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type
9582012bc364SMatthew G. Knepley 
958320f4b53cSBarry Smith   Not Collective
9584012bc364SMatthew G. Knepley 
9585012bc364SMatthew G. Knepley   Input Parameters:
9586bb7acecfSBarry Smith + ct    - The `DMPolytopeType`
9587012bc364SMatthew G. Knepley - point - Coordinates of the point
9588012bc364SMatthew G. Knepley 
95892fe279fdSBarry Smith   Output Parameter:
9590012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type
9591012bc364SMatthew G. Knepley 
9592012bc364SMatthew G. Knepley   Level: advanced
9593012bc364SMatthew G. Knepley 
95941cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()`
9595012bc364SMatthew G. Knepley @*/
9596d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside)
9597d71ae5a4SJacob Faibussowitsch {
9598012bc364SMatthew G. Knepley   PetscReal sum = 0.0;
9599012bc364SMatthew G. Knepley   PetscInt  d;
9600012bc364SMatthew G. Knepley 
9601012bc364SMatthew G. Knepley   PetscFunctionBegin;
9602012bc364SMatthew G. Knepley   *inside = PETSC_TRUE;
9603012bc364SMatthew G. Knepley   switch (ct) {
9604012bc364SMatthew G. Knepley   case DM_POLYTOPE_TRIANGLE:
9605012bc364SMatthew G. Knepley   case DM_POLYTOPE_TETRAHEDRON:
9606012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) {
96079371c9d4SSatish Balay       if (point[d] < -1.0) {
96089371c9d4SSatish Balay         *inside = PETSC_FALSE;
96099371c9d4SSatish Balay         break;
96109371c9d4SSatish Balay       }
9611012bc364SMatthew G. Knepley       sum += point[d];
9612012bc364SMatthew G. Knepley     }
96139371c9d4SSatish Balay     if (sum > PETSC_SMALL) {
96149371c9d4SSatish Balay       *inside = PETSC_FALSE;
96159371c9d4SSatish Balay       break;
96169371c9d4SSatish Balay     }
9617012bc364SMatthew G. Knepley     break;
9618012bc364SMatthew G. Knepley   case DM_POLYTOPE_QUADRILATERAL:
9619012bc364SMatthew G. Knepley   case DM_POLYTOPE_HEXAHEDRON:
9620012bc364SMatthew G. Knepley     for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d)
96219371c9d4SSatish Balay       if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) {
96229371c9d4SSatish Balay         *inside = PETSC_FALSE;
9623012bc364SMatthew G. Knepley         break;
96249371c9d4SSatish Balay       }
96259371c9d4SSatish Balay     break;
9626d71ae5a4SJacob Faibussowitsch   default:
9627d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]);
9628012bc364SMatthew G. Knepley   }
96293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9630012bc364SMatthew G. Knepley }
9631adc21957SMatthew G. Knepley 
9632adc21957SMatthew G. Knepley /*@
9633adc21957SMatthew G. Knepley   DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default
9634adc21957SMatthew G. Knepley 
9635adc21957SMatthew G. Knepley   Logically collective
9636adc21957SMatthew G. Knepley 
9637adc21957SMatthew G. Knepley   Input Parameters:
9638adc21957SMatthew G. Knepley + dm      - The DM
9639adc21957SMatthew G. Knepley - reorder - Flag for reordering
9640adc21957SMatthew G. Knepley 
9641adc21957SMatthew G. Knepley   Level: intermediate
9642adc21957SMatthew G. Knepley 
9643adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()`
9644adc21957SMatthew G. Knepley @*/
9645adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder)
9646adc21957SMatthew G. Knepley {
9647adc21957SMatthew G. Knepley   PetscFunctionBegin;
9648adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9649adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder));
9650adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9651adc21957SMatthew G. Knepley }
9652adc21957SMatthew G. Knepley 
9653adc21957SMatthew G. Knepley /*@
9654adc21957SMatthew G. Knepley   DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default
9655adc21957SMatthew G. Knepley 
9656adc21957SMatthew G. Knepley   Not collective
9657adc21957SMatthew G. Knepley 
9658adc21957SMatthew G. Knepley   Input Parameter:
9659adc21957SMatthew G. Knepley . dm - The DM
9660adc21957SMatthew G. Knepley 
9661adc21957SMatthew G. Knepley   Output Parameter:
9662adc21957SMatthew G. Knepley . reorder - Flag for reordering
9663adc21957SMatthew G. Knepley 
9664adc21957SMatthew G. Knepley   Level: intermediate
9665adc21957SMatthew G. Knepley 
9666adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`
9667adc21957SMatthew G. Knepley @*/
9668adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder)
9669adc21957SMatthew G. Knepley {
9670adc21957SMatthew G. Knepley   PetscFunctionBegin;
9671adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9672adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9673adc21957SMatthew G. Knepley   *reorder = DM_REORDER_DEFAULT_NOTSET;
9674adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder));
9675adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9676adc21957SMatthew G. Knepley }
9677adc21957SMatthew G. Knepley 
9678cc4c1da9SBarry Smith /*@
9679adc21957SMatthew G. Knepley   DMReorderSectionSetType - Set the type of local section reordering
9680adc21957SMatthew G. Knepley 
9681adc21957SMatthew G. Knepley   Logically collective
9682adc21957SMatthew G. Knepley 
9683adc21957SMatthew G. Knepley   Input Parameters:
9684adc21957SMatthew G. Knepley + dm      - The DM
9685adc21957SMatthew G. Knepley - reorder - The reordering method
9686adc21957SMatthew G. Knepley 
9687adc21957SMatthew G. Knepley   Level: intermediate
9688adc21957SMatthew G. Knepley 
9689adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()`
9690adc21957SMatthew G. Knepley @*/
9691adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder)
9692adc21957SMatthew G. Knepley {
9693adc21957SMatthew G. Knepley   PetscFunctionBegin;
9694adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9695adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder));
9696adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9697adc21957SMatthew G. Knepley }
9698adc21957SMatthew G. Knepley 
9699cc4c1da9SBarry Smith /*@
9700adc21957SMatthew G. Knepley   DMReorderSectionGetType - Get the reordering type for the local section
9701adc21957SMatthew G. Knepley 
9702adc21957SMatthew G. Knepley   Not collective
9703adc21957SMatthew G. Knepley 
9704adc21957SMatthew G. Knepley   Input Parameter:
9705adc21957SMatthew G. Knepley . dm - The DM
9706adc21957SMatthew G. Knepley 
9707adc21957SMatthew G. Knepley   Output Parameter:
9708adc21957SMatthew G. Knepley . reorder - The reordering method
9709adc21957SMatthew G. Knepley 
9710adc21957SMatthew G. Knepley   Level: intermediate
9711adc21957SMatthew G. Knepley 
9712adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()`
9713adc21957SMatthew G. Knepley @*/
9714adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder)
9715adc21957SMatthew G. Knepley {
9716adc21957SMatthew G. Knepley   PetscFunctionBegin;
9717adc21957SMatthew G. Knepley   PetscValidHeaderSpecific(dm, DM_CLASSID, 1);
9718adc21957SMatthew G. Knepley   PetscAssertPointer(reorder, 2);
9719adc21957SMatthew G. Knepley   *reorder = NULL;
9720adc21957SMatthew G. Knepley   PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder));
9721adc21957SMatthew G. Knepley   PetscFunctionReturn(PETSC_SUCCESS);
9722adc21957SMatthew G. Knepley }
9723