1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 16cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1700d952a4SJed Brown #endif 1800d952a4SJed Brown 19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2267a56275SMatthew G Knepley 23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 250e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 27476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 28476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 3060c22052SBarry Smith 31a4121054SBarry Smith /*@ 32bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 33bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 34a4121054SBarry Smith 35d083f849SBarry Smith Collective 36a4121054SBarry Smith 37a4121054SBarry Smith Input Parameter: 38bb7acecfSBarry Smith . comm - The communicator for the `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Output Parameter: 41bb7acecfSBarry Smith . dm - The `DM` object 42a4121054SBarry Smith 43a4121054SBarry Smith Level: beginner 44a4121054SBarry Smith 45bb7acecfSBarry Smith Notes: 46bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 49bb7acecfSBarry Smith error when you try to use the dm. 50bb7acecfSBarry Smith 511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 52a4121054SBarry Smith @*/ 53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 54d71ae5a4SJacob Faibussowitsch { 55a4121054SBarry Smith DM v; 56e5e52638SMatthew G. Knepley PetscDS ds; 57a4121054SBarry Smith 58a4121054SBarry Smith PetscFunctionBegin; 594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 600298fd71SBarry Smith *dm = NULL; 619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 62a4121054SBarry Smith 639566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 64e7c4fc90SDmitry Karpeev 6562e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6662e5d2d2SJDBetteridge 6749be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6849be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 690298fd71SBarry Smith v->ltogmap = NULL; 70a4ea9b21SRichard Tran Mills v->bind_below = 0; 711411c6eeSJed Brown v->bs = 1; 72171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 75c58f1c22SToby Isaac v->labels = NULL; 7634aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7734aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 78c58f1c22SToby Isaac v->depthLabel = NULL; 79ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 801bb6d2a8SBarry Smith v->localSection = NULL; 811bb6d2a8SBarry Smith v->globalSection = NULL; 823b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 833b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8479769bd5SJed Brown v->defaultConstraint.bias = NULL; 856858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 866858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 876858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8896173672SStefano Zampini v->dim = PETSC_DETERMINE; 89435a35e8SMatthew G Knepley { 90435a35e8SMatthew G Knepley PetscInt i; 91435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 920298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 93f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 94435a35e8SMatthew G Knepley } 95435a35e8SMatthew G Knepley } 969566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 989566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 999566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 10014f150ffSMatthew G. Knepley v->dmBC = NULL; 101a8fb8f29SToby Isaac v->coarseMesh = NULL; 102f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 103cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1049566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1059566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1064a7a4c06SLawrence Mitchell 1071411c6eeSJed Brown *dm = v; 1083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109a4121054SBarry Smith } 110a4121054SBarry Smith 11138221697SMatthew G. Knepley /*@ 112bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11338221697SMatthew G. Knepley 114d083f849SBarry Smith Collective 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Input Parameter: 117bb7acecfSBarry Smith . dm - The original `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Output Parameter: 120bb7acecfSBarry Smith . newdm - The new `DM` object 12138221697SMatthew G. Knepley 12238221697SMatthew G. Knepley Level: beginner 12338221697SMatthew G. Knepley 1241cb8cacdSPatrick Sanan Notes: 125bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 126bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 127bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1281bb6d2a8SBarry Smith 129bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 13089706ed2SPatrick Sanan 131bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 132bb7acecfSBarry Smith 13360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13438221697SMatthew G. Knepley @*/ 135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 136d71ae5a4SJacob Faibussowitsch { 13738221697SMatthew G. Knepley PetscSF sf; 13838221697SMatthew G. Knepley Vec coords; 13938221697SMatthew G. Knepley void *ctx; 140ec196627SMatthew G. Knepley MatOrderingType otype; 141ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1426858538eSMatthew G. Knepley PetscInt dim, cdim, i; 14338221697SMatthew G. Knepley 14438221697SMatthew G. Knepley PetscFunctionBegin; 14538221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1464f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1479566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1489566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 149ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 150ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 151c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 152fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1539566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1559566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 159dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1603f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1619566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1629566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1639566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1649566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 165ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 166ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 167ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 168ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1696858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1706858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 171be4c1c3eSMatthew G. Knepley DM ncdm; 172be4c1c3eSMatthew G. Knepley PetscSection cs; 1735a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 174be4c1c3eSMatthew G. Knepley 1756858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1769566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 177712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1785a0206caSToby Isaac if (pEndMax >= 0) { 1796858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1806858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1826858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1836858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 185be4c1c3eSMatthew G. Knepley } 186be4c1c3eSMatthew G. Knepley } 1876858538eSMatthew G. Knepley } 1889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19138221697SMatthew G. Knepley if (coords) { 1929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19338221697SMatthew G. Knepley } else { 1949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1959566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19638221697SMatthew G. Knepley } 1976858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1986858538eSMatthew G. Knepley if (coords) { 1996858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2006858538eSMatthew G. Knepley } else { 2016858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2026858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2036858538eSMatthew G. Knepley } 20490b157c4SStefano Zampini { 2054fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2066858538eSMatthew G. Knepley 2074fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2084fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 209c6b900c6SMatthew G. Knepley } 21034aa8a36SMatthew G. Knepley { 21134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21234aa8a36SMatthew G. Knepley 2139566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2149566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21534aa8a36SMatthew G. Knepley } 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21738221697SMatthew G. Knepley } 21838221697SMatthew G. Knepley 2199a42bb27SBarry Smith /*@C 220bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2219a42bb27SBarry Smith 22220f4b53cSBarry Smith Logically Collective 2239a42bb27SBarry Smith 224147403d9SBarry Smith Input Parameters: 22532546409SMatthew G. Knepley + dm - initial distributed array 226bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2279a42bb27SBarry Smith 22820f4b53cSBarry Smith Options Database Key: 229147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2309a42bb27SBarry Smith 2319a42bb27SBarry Smith Level: intermediate 2329a42bb27SBarry Smith 23360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 234bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2359a42bb27SBarry Smith @*/ 23632546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 237d71ae5a4SJacob Faibussowitsch { 23832546409SMatthew G. Knepley char *tmp; 23932546409SMatthew G. Knepley 2409a42bb27SBarry Smith PetscFunctionBegin; 24132546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24232546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24332546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24432546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24532546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2479a42bb27SBarry Smith } 2489a42bb27SBarry Smith 249c0dedaeaSBarry Smith /*@C 250bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 251c0dedaeaSBarry Smith 25220f4b53cSBarry Smith Logically Collective 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Input Parameter: 255c0dedaeaSBarry Smith . da - initial distributed array 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Output Parameter: 258c0dedaeaSBarry Smith . ctype - the vector type 259c0dedaeaSBarry Smith 260c0dedaeaSBarry Smith Level: intermediate 261c0dedaeaSBarry Smith 26260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 263c0dedaeaSBarry Smith @*/ 264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 265d71ae5a4SJacob Faibussowitsch { 266c0dedaeaSBarry Smith PetscFunctionBegin; 267c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 268c0dedaeaSBarry Smith *ctype = da->vectype; 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270c0dedaeaSBarry Smith } 271c0dedaeaSBarry Smith 2725f1ad066SMatthew G Knepley /*@ 273bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2745f1ad066SMatthew G Knepley 27520f4b53cSBarry Smith Not Collective 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Input Parameter: 278bb7acecfSBarry Smith . v - The `Vec` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Output Parameter: 281bb7acecfSBarry Smith . dm - The `DM` 2825f1ad066SMatthew G Knepley 2835f1ad066SMatthew G Knepley Level: intermediate 2845f1ad066SMatthew G Knepley 285bb7acecfSBarry Smith Note: 286bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 287bb7acecfSBarry Smith 2881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2895f1ad066SMatthew G Knepley @*/ 290d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 291d71ae5a4SJacob Faibussowitsch { 2925f1ad066SMatthew G Knepley PetscFunctionBegin; 2935f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2944f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2975f1ad066SMatthew G Knepley } 2985f1ad066SMatthew G Knepley 2995f1ad066SMatthew G Knepley /*@ 300bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3015f1ad066SMatthew G Knepley 30220f4b53cSBarry Smith Not Collective 3035f1ad066SMatthew G Knepley 3045f1ad066SMatthew G Knepley Input Parameters: 305bb7acecfSBarry Smith + v - The `Vec` 306bb7acecfSBarry Smith - dm - The `DM` 3075f1ad066SMatthew G Knepley 30820f4b53cSBarry Smith Level: developer 30920f4b53cSBarry Smith 310bb7acecfSBarry Smith Note: 311bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 312d9805387SMatthew G. Knepley 313bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 314bb7acecfSBarry Smith 3151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3165f1ad066SMatthew G Knepley @*/ 317d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 318d71ae5a4SJacob Faibussowitsch { 3195f1ad066SMatthew G Knepley PetscFunctionBegin; 3205f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 321d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3245f1ad066SMatthew G Knepley } 3255f1ad066SMatthew G Knepley 326521d9a4cSLisandro Dalcin /*@C 327bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3288f1509bcSBarry Smith 32920f4b53cSBarry Smith Logically Collective 3308f1509bcSBarry Smith 3318f1509bcSBarry Smith Input Parameters: 332bb7acecfSBarry Smith + dm - the `DM` context 3338f1509bcSBarry Smith - ctype - the matrix type 3348f1509bcSBarry Smith 33520f4b53cSBarry Smith Options Database Key: 3368f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith Level: intermediate 3398f1509bcSBarry Smith 3401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 341bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3428f1509bcSBarry Smith @*/ 343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 344d71ae5a4SJacob Faibussowitsch { 3458f1509bcSBarry Smith PetscFunctionBegin; 3468f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3478f1509bcSBarry Smith dm->coloringtype = ctype; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3498f1509bcSBarry Smith } 3508f1509bcSBarry Smith 3518f1509bcSBarry Smith /*@C 352bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 353521d9a4cSLisandro Dalcin 35420f4b53cSBarry Smith Logically Collective 355521d9a4cSLisandro Dalcin 356521d9a4cSLisandro Dalcin Input Parameter: 357bb7acecfSBarry Smith . dm - the `DM` context 3588f1509bcSBarry Smith 3598f1509bcSBarry Smith Output Parameter: 3608f1509bcSBarry Smith . ctype - the matrix type 3618f1509bcSBarry Smith 36220f4b53cSBarry Smith Options Database Key: 3638f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith Level: intermediate 3668f1509bcSBarry Smith 3671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36842747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3698f1509bcSBarry Smith @*/ 370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 371d71ae5a4SJacob Faibussowitsch { 3728f1509bcSBarry Smith PetscFunctionBegin; 3738f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3748f1509bcSBarry Smith *ctype = dm->coloringtype; 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3768f1509bcSBarry Smith } 3778f1509bcSBarry Smith 3788f1509bcSBarry Smith /*@C 379bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3808f1509bcSBarry Smith 38120f4b53cSBarry Smith Logically Collective 3828f1509bcSBarry Smith 3838f1509bcSBarry Smith Input Parameters: 384bb7acecfSBarry Smith + dm - the `DM` context 385bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 386521d9a4cSLisandro Dalcin 38720f4b53cSBarry Smith Options Database Key: 388bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 389521d9a4cSLisandro Dalcin 390521d9a4cSLisandro Dalcin Level: intermediate 391521d9a4cSLisandro Dalcin 39242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 393521d9a4cSLisandro Dalcin @*/ 394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 395d71ae5a4SJacob Faibussowitsch { 39632546409SMatthew G. Knepley char *tmp; 39732546409SMatthew G. Knepley 398521d9a4cSLisandro Dalcin PetscFunctionBegin; 399521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40032546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40132546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4029566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40332546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405521d9a4cSLisandro Dalcin } 406521d9a4cSLisandro Dalcin 407c0dedaeaSBarry Smith /*@C 40820f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 409c0dedaeaSBarry Smith 41020f4b53cSBarry Smith Logically Collective 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Input Parameter: 413bb7acecfSBarry Smith . dm - the `DM` context 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Output Parameter: 416c0dedaeaSBarry Smith . ctype - the matrix type 417c0dedaeaSBarry Smith 418c0dedaeaSBarry Smith Level: intermediate 419c0dedaeaSBarry Smith 42042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 421c0dedaeaSBarry Smith @*/ 422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 423d71ae5a4SJacob Faibussowitsch { 424c0dedaeaSBarry Smith PetscFunctionBegin; 425c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 426c0dedaeaSBarry Smith *ctype = dm->mattype; 4273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 428c0dedaeaSBarry Smith } 429c0dedaeaSBarry Smith 430c688c046SMatthew G Knepley /*@ 431bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 432c688c046SMatthew G Knepley 43320f4b53cSBarry Smith Not Collective 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Input Parameter: 436bb7acecfSBarry Smith . A - The `Mat` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Output Parameter: 439bb7acecfSBarry Smith . dm - The `DM` 440c688c046SMatthew G Knepley 441c688c046SMatthew G Knepley Level: intermediate 442c688c046SMatthew G Knepley 443bb7acecfSBarry Smith Note: 444bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 445bb7acecfSBarry Smith 44660225df5SJacob Faibussowitsch Developer Notes: 447bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4488f1509bcSBarry Smith 4491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 450c688c046SMatthew G Knepley @*/ 451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 452d71ae5a4SJacob Faibussowitsch { 453c688c046SMatthew G Knepley PetscFunctionBegin; 454c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 458c688c046SMatthew G Knepley } 459c688c046SMatthew G Knepley 460c688c046SMatthew G Knepley /*@ 461bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 462c688c046SMatthew G Knepley 46320f4b53cSBarry Smith Not Collective 464c688c046SMatthew G Knepley 465c688c046SMatthew G Knepley Input Parameters: 46620f4b53cSBarry Smith + A - The `Mat` 46720f4b53cSBarry Smith - dm - The `DM` 468c688c046SMatthew G Knepley 469bb7acecfSBarry Smith Level: developer 470c688c046SMatthew G Knepley 471bb7acecfSBarry Smith Note: 472bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 473bb7acecfSBarry Smith 47460225df5SJacob Faibussowitsch Developer Notes: 475bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 476bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4778f1509bcSBarry Smith 4781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 479c688c046SMatthew G Knepley @*/ 480d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 481d71ae5a4SJacob Faibussowitsch { 482c688c046SMatthew G Knepley PetscFunctionBegin; 483c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4848865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487c688c046SMatthew G Knepley } 488c688c046SMatthew G Knepley 4899a42bb27SBarry Smith /*@C 490bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4919a42bb27SBarry Smith 49220f4b53cSBarry Smith Logically Collective 4939a42bb27SBarry Smith 494d8d19677SJose E. Roman Input Parameters: 49560225df5SJacob Faibussowitsch + dm - the `DM` context 496bb7acecfSBarry Smith - prefix - the prefix to prepend 4979a42bb27SBarry Smith 49820f4b53cSBarry Smith Level: advanced 49920f4b53cSBarry Smith 50020f4b53cSBarry Smith Note: 5019a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5029a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5039a42bb27SBarry Smith 5041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5059a42bb27SBarry Smith @*/ 506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 507d71ae5a4SJacob Faibussowitsch { 5089a42bb27SBarry Smith PetscFunctionBegin; 5099a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5111baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5121baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5149a42bb27SBarry Smith } 5159a42bb27SBarry Smith 51631697293SDave May /*@C 517da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 518bb7acecfSBarry Smith `DM` options in the options database. 51931697293SDave May 52020f4b53cSBarry Smith Logically Collective 52131697293SDave May 52231697293SDave May Input Parameters: 523bb7acecfSBarry Smith + dm - the `DM` context 524bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52531697293SDave May 52620f4b53cSBarry Smith Level: advanced 52720f4b53cSBarry Smith 52820f4b53cSBarry Smith Note: 529bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53031697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53131697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53231697293SDave May 5331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53431697293SDave May @*/ 535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 536d71ae5a4SJacob Faibussowitsch { 53731697293SDave May PetscFunctionBegin; 53831697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5399566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54131697293SDave May } 54231697293SDave May 54331697293SDave May /*@C 54431697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 545bb7acecfSBarry Smith DM options in the options database. 54631697293SDave May 54731697293SDave May Not Collective 54831697293SDave May 5492fe279fdSBarry Smith Input Parameter: 550bb7acecfSBarry Smith . dm - the `DM` context 55131697293SDave May 5522fe279fdSBarry Smith Output Parameter: 55331697293SDave May . prefix - pointer to the prefix string used is returned 55431697293SDave May 55531697293SDave May Level: advanced 55631697293SDave May 55760225df5SJacob Faibussowitsch Fortran Notes: 55820f4b53cSBarry Smith Pass in a string 'prefix' of 55920f4b53cSBarry Smith sufficient length to hold the prefix. 56020f4b53cSBarry Smith 5611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56231697293SDave May @*/ 563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 564d71ae5a4SJacob Faibussowitsch { 56531697293SDave May PetscFunctionBegin; 56631697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56931697293SDave May } 57031697293SDave May 57162e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 572d71ae5a4SJacob Faibussowitsch { 5736eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57488bdff64SToby Isaac 57588bdff64SToby Isaac PetscFunctionBegin; 576aab5bcd8SJed Brown *ncrefct = 0; 57788bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57888bdff64SToby Isaac refct--; 57988bdff64SToby Isaac if (recurseCoarse) { 58088bdff64SToby Isaac PetscInt coarseCount; 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58388bdff64SToby Isaac refct += coarseCount; 58488bdff64SToby Isaac } 58588bdff64SToby Isaac } 58688bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58788bdff64SToby Isaac refct--; 58888bdff64SToby Isaac if (recurseFine) { 58988bdff64SToby Isaac PetscInt fineCount; 59088bdff64SToby Isaac 59162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59288bdff64SToby Isaac refct += fineCount; 59388bdff64SToby Isaac } 59488bdff64SToby Isaac } 59588bdff64SToby Isaac *ncrefct = refct; 5963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59788bdff64SToby Isaac } 59888bdff64SToby Isaac 59962e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 60062e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60162e5d2d2SJDBetteridge { 60262e5d2d2SJDBetteridge PetscFunctionBegin; 60362e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60562e5d2d2SJDBetteridge } 60662e5d2d2SJDBetteridge 607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 608d71ae5a4SJacob Faibussowitsch { 6095d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 610354557abSToby Isaac 611354557abSToby Isaac PetscFunctionBegin; 612354557abSToby Isaac /* destroy the labels */ 613354557abSToby Isaac while (next) { 614354557abSToby Isaac DMLabelLink tmp = next->next; 615354557abSToby Isaac 6165d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 617ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6189566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6199566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 620354557abSToby Isaac next = tmp; 621354557abSToby Isaac } 6225d80c0bfSVaclav Hapla dm->labels = NULL; 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 624354557abSToby Isaac } 625354557abSToby Isaac 62666976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 627d71ae5a4SJacob Faibussowitsch { 6286858538eSMatthew G. Knepley PetscFunctionBegin; 6296858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6306858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6316858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6326858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6336858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6356858538eSMatthew G. Knepley } 6366858538eSMatthew G. Knepley 6371fb7b255SJunchao Zhang /*@C 638bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63947c6ae99SBarry Smith 64020f4b53cSBarry Smith Collective 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith Input Parameter: 643bb7acecfSBarry Smith . dm - the `DM` object to destroy 64447c6ae99SBarry Smith 64547c6ae99SBarry Smith Level: developer 64647c6ae99SBarry Smith 6471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64847c6ae99SBarry Smith @*/ 649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 650d71ae5a4SJacob Faibussowitsch { 6516eb26441SStefano Zampini PetscInt cnt; 65247c6ae99SBarry Smith 65347c6ae99SBarry Smith PetscFunctionBegin; 6543ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 655f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65687e657c6SBarry Smith 65788bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 659f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6609371c9d4SSatish Balay if (--cnt > 0) { 6619371c9d4SSatish Balay *dm = NULL; 6623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6639371c9d4SSatish Balay } 664f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 665f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6666eb26441SStefano Zampini 6679566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6689566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 669974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 670974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6712348bcf4SPeter Brune 672b17ce1afSJed Brown /* Destroy the list of hooks */ 673c833c3b5SJed Brown { 674c833c3b5SJed Brown DMCoarsenHookLink link, next; 675b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 676b17ce1afSJed Brown next = link->next; 6779566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 678b17ce1afSJed Brown } 6790298fd71SBarry Smith (*dm)->coarsenhook = NULL; 680c833c3b5SJed Brown } 681c833c3b5SJed Brown { 682c833c3b5SJed Brown DMRefineHookLink link, next; 683c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 684c833c3b5SJed Brown next = link->next; 6859566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 686c833c3b5SJed Brown } 6870298fd71SBarry Smith (*dm)->refinehook = NULL; 688c833c3b5SJed Brown } 689be081cd6SPeter Brune { 690be081cd6SPeter Brune DMSubDomainHookLink link, next; 691be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 692be081cd6SPeter Brune next = link->next; 6939566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 694be081cd6SPeter Brune } 6950298fd71SBarry Smith (*dm)->subdomainhook = NULL; 696be081cd6SPeter Brune } 697baf369e7SPeter Brune { 698baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 699baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 700baf369e7SPeter Brune next = link->next; 7019566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 702baf369e7SPeter Brune } 7030298fd71SBarry Smith (*dm)->gtolhook = NULL; 704baf369e7SPeter Brune } 705d4d07f1eSToby Isaac { 706d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 707d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 708d4d07f1eSToby Isaac next = link->next; 7099566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 710d4d07f1eSToby Isaac } 711d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 712d4d07f1eSToby Isaac } 713aa1993deSMatthew G Knepley /* Destroy the work arrays */ 714aa1993deSMatthew G Knepley { 715aa1993deSMatthew G Knepley DMWorkLink link, next; 716936381afSPierre Jolivet PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem); 717aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 718aa1993deSMatthew G Knepley next = link->next; 7199566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 721aa1993deSMatthew G Knepley } 7220298fd71SBarry Smith (*dm)->workin = NULL; 723aa1993deSMatthew G Knepley } 724c58f1c22SToby Isaac /* destroy the labels */ 7259566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 726f4cdcedcSVaclav Hapla /* destroy the fields */ 7279566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 728f4cdcedcSVaclav Hapla /* destroy the boundaries */ 729e6f8dbb6SToby Isaac { 730e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 731e6f8dbb6SToby Isaac while (next) { 732e6f8dbb6SToby Isaac DMBoundary b = next; 733e6f8dbb6SToby Isaac 734e6f8dbb6SToby Isaac next = b->next; 7359566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 736e6f8dbb6SToby Isaac } 737e6f8dbb6SToby Isaac } 738b17ce1afSJed Brown 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74252536dc3SBarry Smith 74348a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7449566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74888ed4aceSMatthew G Knepley 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 751adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7529566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75748a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 759e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7609566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76148a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7626eb26441SStefano Zampini 7639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76448a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7664fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7689566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7696858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7706858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7719566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7746725e60dSJed Brown PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local)); 7756725e60dSJed Brown PetscCall(VecDestroy(&(*dm)->periodic.affine)); 7766636e97aSMatthew G Knepley 7779566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 779e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7809566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 781732e2eb9SMatthew G Knepley 782213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7839566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 784d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 785f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7869566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7879566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 788f918ec44SMatthew G. Knepley #endif 789435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7909566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79247c6ae99SBarry Smith } 79347c6ae99SBarry Smith 794d7bf68aeSBarry Smith /*@ 795bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 796d7bf68aeSBarry Smith 79720f4b53cSBarry Smith Collective 798d7bf68aeSBarry Smith 799d7bf68aeSBarry Smith Input Parameter: 800bb7acecfSBarry Smith . dm - the `DM` object to setup 801d7bf68aeSBarry Smith 802bb7acecfSBarry Smith Level: intermediate 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Note: 805bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 806bb7acecfSBarry Smith 8071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 808d7bf68aeSBarry Smith @*/ 809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 810d71ae5a4SJacob Faibussowitsch { 811d7bf68aeSBarry Smith PetscFunctionBegin; 812171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8133ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 814dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8158387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 817d7bf68aeSBarry Smith } 818d7bf68aeSBarry Smith 819d7bf68aeSBarry Smith /*@ 820bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 821d7bf68aeSBarry Smith 82220f4b53cSBarry Smith Collective 823d7bf68aeSBarry Smith 824d7bf68aeSBarry Smith Input Parameter: 825bb7acecfSBarry Smith . dm - the `DM` object to set options for 826d7bf68aeSBarry Smith 82720f4b53cSBarry Smith Options Database Keys: 828bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 829bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 830bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 831a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83220f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83320f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8349318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 835cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8365dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8379318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8389318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8399318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 840bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 841bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8429318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 843be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 844be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 845be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8469318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8479318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8489318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 849bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8509318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8519318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8529318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8539318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 854bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8559318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8569318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8579318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8589318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 859bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 860d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 861d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 862d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 865909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 866909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8679318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8689318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8699318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87020f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 871d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87220f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 873bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 874bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 875bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 876bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 877bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 878384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 879d7bf68aeSBarry Smith 88095eb5ee5SVaclav Hapla Level: intermediate 88195eb5ee5SVaclav Hapla 8821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 883bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 88460225df5SJacob Faibussowitsch `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA` 885d7bf68aeSBarry Smith @*/ 886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 887d71ae5a4SJacob Faibussowitsch { 8887781c08eSBarry Smith char typeName[256]; 889ca266f36SBarry Smith PetscBool flg; 890d7bf68aeSBarry Smith 891d7bf68aeSBarry Smith PetscFunctionBegin; 892171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89349be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8949566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 8959566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 896dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 897d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 8989566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 8999566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9001baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9019566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9021baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 903863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 906eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 907dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 908f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 909dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 910d0609cedSBarry Smith PetscOptionsEnd(); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912d7bf68aeSBarry Smith } 913d7bf68aeSBarry Smith 914fc9bc008SSatish Balay /*@C 915bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 916fe2efc57SMark 91720f4b53cSBarry Smith Collective 918fe2efc57SMark 919fe2efc57SMark Input Parameters: 920bb7acecfSBarry Smith + dm - the `DM` object 92120f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92260225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 923fe2efc57SMark 924fe2efc57SMark Level: intermediate 925bb7acecfSBarry Smith 926bb7acecfSBarry Smith Note: 927bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 928bb7acecfSBarry Smith 92960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 930fe2efc57SMark @*/ 931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 932d71ae5a4SJacob Faibussowitsch { 933fe2efc57SMark PetscFunctionBegin; 934fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9359566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 937fe2efc57SMark } 938fe2efc57SMark 939fe2efc57SMark /*@C 940bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 941bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94247c6ae99SBarry Smith 94320f4b53cSBarry Smith Collective 94447c6ae99SBarry Smith 945d8d19677SJose E. Roman Input Parameters: 946bb7acecfSBarry Smith + dm - the `DM` object to view 94747c6ae99SBarry Smith - v - the viewer 94847c6ae99SBarry Smith 94920f4b53cSBarry Smith Level: beginner 95020f4b53cSBarry Smith 951cd7e8a5eSksagiyam Notes: 952bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 953bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 954bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 955cd7e8a5eSksagiyam 9561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 95747c6ae99SBarry Smith @*/ 958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 959d71ae5a4SJacob Faibussowitsch { 96032c0f0efSBarry Smith PetscBool isbinary; 96176a8abe0SBarry Smith PetscMPIInt size; 96276a8abe0SBarry Smith PetscViewerFormat format; 96347c6ae99SBarry Smith 96447c6ae99SBarry Smith PetscFunctionBegin; 965171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96648a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 967b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 96874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 96974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 97374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 97474903a4fSStefano Zampini in an error here */ 97574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9769566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 977b1b135c8SBarry Smith 9789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9803ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9819566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 98332c0f0efSBarry Smith if (isbinary) { 98455849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 98532c0f0efSBarry Smith char type[256]; 98632c0f0efSBarry Smith 9879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 988c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9899566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99032c0f0efSBarry Smith } 991dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99347c6ae99SBarry Smith } 99447c6ae99SBarry Smith 99547c6ae99SBarry Smith /*@ 996bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 997bb7acecfSBarry Smith that is it has no ghost locations. 99847c6ae99SBarry Smith 99920f4b53cSBarry Smith Collective 100047c6ae99SBarry Smith 100147c6ae99SBarry Smith Input Parameter: 1002bb7acecfSBarry Smith . dm - the `DM` object 100347c6ae99SBarry Smith 100447c6ae99SBarry Smith Output Parameter: 100547c6ae99SBarry Smith . vec - the global vector 100647c6ae99SBarry Smith 1007073dac72SJed Brown Level: beginner 100847c6ae99SBarry Smith 10091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1010bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101147c6ae99SBarry Smith @*/ 1012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1013d71ae5a4SJacob Faibussowitsch { 101447c6ae99SBarry Smith PetscFunctionBegin; 1015171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10164f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1017dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 101876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1019c6b011d8SStefano Zampini DM vdm; 1020c6b011d8SStefano Zampini 10219566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10227a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1023c6b011d8SStefano Zampini } 10243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102547c6ae99SBarry Smith } 102647c6ae99SBarry Smith 102747c6ae99SBarry Smith /*@ 1028bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 102947c6ae99SBarry Smith 103047c6ae99SBarry Smith Not Collective 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith Input Parameter: 1033bb7acecfSBarry Smith . dm - the `DM` object 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith Output Parameter: 103647c6ae99SBarry Smith . vec - the local vector 103747c6ae99SBarry Smith 1038073dac72SJed Brown Level: beginner 103947c6ae99SBarry Smith 104020f4b53cSBarry Smith Note: 1041bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1042bb7acecfSBarry Smith 10431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1044bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 104547c6ae99SBarry Smith @*/ 1046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1047d71ae5a4SJacob Faibussowitsch { 104847c6ae99SBarry Smith PetscFunctionBegin; 1049171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10504f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1051dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1053c6b011d8SStefano Zampini DM vdm; 1054c6b011d8SStefano Zampini 10559566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10567a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1057c6b011d8SStefano Zampini } 10583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105947c6ae99SBarry Smith } 106047c6ae99SBarry Smith 10611411c6eeSJed Brown /*@ 1062bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10631411c6eeSJed Brown 106420f4b53cSBarry Smith Collective 10651411c6eeSJed Brown 10661411c6eeSJed Brown Input Parameter: 1067bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10681411c6eeSJed Brown 10691411c6eeSJed Brown Output Parameter: 10701411c6eeSJed Brown . ltog - the mapping 10711411c6eeSJed Brown 1072bb7acecfSBarry Smith Level: advanced 10731411c6eeSJed Brown 10741411c6eeSJed Brown Notes: 1075bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10761411c6eeSJed Brown 1077bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1078bb7acecfSBarry Smith need to use this function with those objects. 1079bb7acecfSBarry Smith 1080bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1081bb7acecfSBarry Smith 108260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1083bb7acecfSBarry Smith `DMCreateMatrix()` 10841411c6eeSJed Brown @*/ 1085d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1086d71ae5a4SJacob Faibussowitsch { 10870be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10881411c6eeSJed Brown 10891411c6eeSJed Brown PetscFunctionBegin; 10901411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10914f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 10921411c6eeSJed Brown if (!dm->ltogmap) { 109337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 109437d0c07bSMatthew G Knepley 10959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 109637d0c07bSMatthew G Knepley if (section) { 1097a974ec88SMatthew G. Knepley const PetscInt *cdofs; 109837d0c07bSMatthew G Knepley PetscInt *ltog; 1099ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110037d0c07bSMatthew G Knepley 11019566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 110537d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1106e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 110737d0c07bSMatthew G Knepley 110837d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11131a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11141a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1115ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11165227eafbSStefano Zampini 1117e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11185227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1119e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1120e6befd46SJed Brown cind++; 1121e6befd46SJed Brown } else { 11225227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1123e6befd46SJed Brown } 112437d0c07bSMatthew G Knepley } 112537d0c07bSMatthew G Knepley } 1126bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11279371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11289371c9d4SSatish Balay bsLocal[1] = bs; 11299566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11309371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11319371c9d4SSatish Balay bs = 1; 11329371c9d4SSatish Balay } else { 11339371c9d4SSatish Balay bs = bsMinMax[0]; 11349371c9d4SSatish Balay } 11357591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11367591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1137ccf3bd66SMatthew G. Knepley if (bs > 1) { 1138ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1139ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1140ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1141ca469d19SJed Brown } 1142ccf3bd66SMatthew G. Knepley n /= bs; 1143ccf3bd66SMatthew G. Knepley } 11449566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1145dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 114637d0c07bSMatthew G Knepley } 11471411c6eeSJed Brown *ltog = dm->ltogmap; 11483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11491411c6eeSJed Brown } 11501411c6eeSJed Brown 11511411c6eeSJed Brown /*@ 1152bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11531411c6eeSJed Brown 11541411c6eeSJed Brown Not Collective 11551411c6eeSJed Brown 11561411c6eeSJed Brown Input Parameter: 1157bb7acecfSBarry Smith . dm - the `DM` with block structure 11581411c6eeSJed Brown 11591411c6eeSJed Brown Output Parameter: 11601411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11611411c6eeSJed Brown 11621411c6eeSJed Brown Level: intermediate 11631411c6eeSJed Brown 1164bb7acecfSBarry Smith Note: 1165bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1166bb7acecfSBarry Smith 1167bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1168bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1169bb7acecfSBarry Smith 11701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11711411c6eeSJed Brown @*/ 1172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1173d71ae5a4SJacob Faibussowitsch { 11741411c6eeSJed Brown PetscFunctionBegin; 11751411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11764f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11777a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11781411c6eeSJed Brown *bs = dm->bs; 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11801411c6eeSJed Brown } 11811411c6eeSJed Brown 118248eeb7c8SBarry Smith /*@C 1183bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1184bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 118547c6ae99SBarry Smith 118620f4b53cSBarry Smith Collective 118747c6ae99SBarry Smith 1188d8d19677SJose E. Roman Input Parameters: 1189bb7acecfSBarry Smith + dmc - the `DM` object 1190bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119147c6ae99SBarry Smith 1192d8d19677SJose E. Roman Output Parameters: 119347c6ae99SBarry Smith + mat - the interpolation 1194bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 119547c6ae99SBarry Smith 119647c6ae99SBarry Smith Level: developer 119747c6ae99SBarry Smith 119895452b02SPatrick Sanan Notes: 1199bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1200bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1201d52bd9f3SBarry Smith 1202bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1203bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 120485afcc9aSBarry Smith 12051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 120647c6ae99SBarry Smith @*/ 1207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1208d71ae5a4SJacob Faibussowitsch { 120947c6ae99SBarry Smith PetscFunctionBegin; 1210a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1211a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12124f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1214dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121747c6ae99SBarry Smith } 121847c6ae99SBarry Smith 12193ad4599aSBarry Smith /*@ 1220a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1221a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12222ed6491fSPatrick Sanan 12232ed6491fSPatrick Sanan Input Parameters: 1224bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1225bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12262ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12272ed6491fSPatrick Sanan 12282ed6491fSPatrick Sanan Output Parameter: 12292ed6491fSPatrick Sanan . scale - the scaled vector 12302ed6491fSPatrick Sanan 1231bb7acecfSBarry Smith Level: advanced 12322ed6491fSPatrick Sanan 1233a4e35b19SJacob Faibussowitsch Notes: 1234a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1235a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1236a4e35b19SJacob Faibussowitsch 123760225df5SJacob Faibussowitsch Developer Notes: 1238bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1239e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1240e9c74fd6SRichard Tran Mills 124160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12422ed6491fSPatrick Sanan @*/ 1243d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1244d71ae5a4SJacob Faibussowitsch { 12452ed6491fSPatrick Sanan Vec fine; 12462ed6491fSPatrick Sanan PetscScalar one = 1.0; 12479704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1248e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12499704db99SRichard Tran Mills #endif 12502ed6491fSPatrick Sanan 12512ed6491fSPatrick Sanan PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12539566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12549566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12559704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12569704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12579704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12589704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12599566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1260e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12619566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12629566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12639566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 126483aa49f4SRichard Tran Mills } 12659704db99SRichard Tran Mills #endif 12669566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12689566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12702ed6491fSPatrick Sanan } 12712ed6491fSPatrick Sanan 12722ed6491fSPatrick Sanan /*@ 1273bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1274bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12753ad4599aSBarry Smith 127620f4b53cSBarry Smith Collective 12773ad4599aSBarry Smith 1278d8d19677SJose E. Roman Input Parameters: 1279bb7acecfSBarry Smith + dmc - the `DM` object 1280bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12813ad4599aSBarry Smith 12823ad4599aSBarry Smith Output Parameter: 12833ad4599aSBarry Smith . mat - the restriction 12843ad4599aSBarry Smith 12853ad4599aSBarry Smith Level: developer 12863ad4599aSBarry Smith 1287bb7acecfSBarry Smith Note: 1288bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1289bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12903ad4599aSBarry Smith 12911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12923ad4599aSBarry Smith @*/ 1293d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1294d71ae5a4SJacob Faibussowitsch { 12953ad4599aSBarry Smith PetscFunctionBegin; 1296a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1297a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12984f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1300dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13033ad4599aSBarry Smith } 13043ad4599aSBarry Smith 130547c6ae99SBarry Smith /*@ 1306a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 130747c6ae99SBarry Smith 130820f4b53cSBarry Smith Collective 130947c6ae99SBarry Smith 1310d8d19677SJose E. Roman Input Parameters: 1311bb7acecfSBarry Smith + dac - the `DM` object 1312bb7acecfSBarry Smith - daf - the second, finer `DM` object 131347c6ae99SBarry Smith 131447c6ae99SBarry Smith Output Parameter: 13156dbf9973SLawrence Mitchell . mat - the injection 131647c6ae99SBarry Smith 131747c6ae99SBarry Smith Level: developer 131847c6ae99SBarry Smith 1319a4e35b19SJacob Faibussowitsch Notes: 1320a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1321a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1322a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1323a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1324a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1325a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1326a4e35b19SJacob Faibussowitsch 1327bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1328bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 132985afcc9aSBarry Smith 13301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1331bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133247c6ae99SBarry Smith @*/ 1333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1334d71ae5a4SJacob Faibussowitsch { 133547c6ae99SBarry Smith PetscFunctionBegin; 1336a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1337a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13384f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1340dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134347c6ae99SBarry Smith } 134447c6ae99SBarry Smith 1345b412c318SBarry Smith /*@ 1346bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1347bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1348bd041c0cSMatthew G. Knepley 134920f4b53cSBarry Smith Collective 1350bd041c0cSMatthew G. Knepley 1351d8d19677SJose E. Roman Input Parameters: 1352bb7acecfSBarry Smith + dmc - the target `DM` object 1353bb7acecfSBarry Smith - dmf - the source `DM` object 1354bd041c0cSMatthew G. Knepley 1355bd041c0cSMatthew G. Knepley Output Parameter: 1356b4937a87SMatthew G. Knepley . mat - the mass matrix 1357bd041c0cSMatthew G. Knepley 1358bd041c0cSMatthew G. Knepley Level: developer 1359bd041c0cSMatthew G. Knepley 1360bb7acecfSBarry Smith Notes: 1361bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1362bb7acecfSBarry Smith 136320f4b53cSBarry Smith if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1364bb7acecfSBarry Smith 136542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1366bd041c0cSMatthew G. Knepley @*/ 1367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1368d71ae5a4SJacob Faibussowitsch { 1369bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1370b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1371b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13724f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13735b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1374dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13755b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 13763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1377b4937a87SMatthew G. Knepley } 1378b4937a87SMatthew G. Knepley 1379b4937a87SMatthew G. Knepley /*@ 1380bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1381b4937a87SMatthew G. Knepley 138220f4b53cSBarry Smith Collective 1383b4937a87SMatthew G. Knepley 1384b4937a87SMatthew G. Knepley Input Parameter: 1385bb7acecfSBarry Smith . dm - the `DM` object 1386b4937a87SMatthew G. Knepley 1387b4937a87SMatthew G. Knepley Output Parameter: 1388bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1389b4937a87SMatthew G. Knepley 1390b4937a87SMatthew G. Knepley Level: developer 1391b4937a87SMatthew G. Knepley 1392bb7acecfSBarry Smith Note: 1393bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1394bb7acecfSBarry Smith 139560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1396b4937a87SMatthew G. Knepley @*/ 1397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1398d71ae5a4SJacob Faibussowitsch { 1399b4937a87SMatthew G. Knepley PetscFunctionBegin; 1400b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14014f572ea9SToby Isaac PetscAssertPointer(lm, 2); 1402dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1404bd041c0cSMatthew G. Knepley } 1405bd041c0cSMatthew G. Knepley 1406bd041c0cSMatthew G. Knepley /*@ 1407bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1408bb7acecfSBarry Smith of a PDE on the `DM`. 140947c6ae99SBarry Smith 141020f4b53cSBarry Smith Collective 141147c6ae99SBarry Smith 1412d8d19677SJose E. Roman Input Parameters: 1413bb7acecfSBarry Smith + dm - the `DM` object 1414bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 141547c6ae99SBarry Smith 141647c6ae99SBarry Smith Output Parameter: 141747c6ae99SBarry Smith . coloring - the coloring 141847c6ae99SBarry Smith 14191bf8429eSBarry Smith Level: developer 14201bf8429eSBarry Smith 1421ec5066bdSBarry Smith Notes: 1422bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1423bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1424ec5066bdSBarry Smith 1425bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14261bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14271bf8429eSBarry Smith otherwise an error will be generated. 1428ec5066bdSBarry Smith 14291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1430aab9d709SJed Brown @*/ 1431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1432d71ae5a4SJacob Faibussowitsch { 143347c6ae99SBarry Smith PetscFunctionBegin; 1434171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14354f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1436dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 143847c6ae99SBarry Smith } 143947c6ae99SBarry Smith 1440b412c318SBarry Smith /*@ 1441bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144247c6ae99SBarry Smith 144320f4b53cSBarry Smith Collective 144447c6ae99SBarry Smith 144547c6ae99SBarry Smith Input Parameter: 1446bb7acecfSBarry Smith . dm - the `DM` object 144747c6ae99SBarry Smith 144847c6ae99SBarry Smith Output Parameter: 144947c6ae99SBarry Smith . mat - the empty Jacobian 145047c6ae99SBarry Smith 145120f4b53cSBarry Smith Options Database Key: 1452bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1453f27dd7c6SMatthew G. Knepley 145420f4b53cSBarry Smith Level: beginner 145520f4b53cSBarry Smith 145695452b02SPatrick Sanan Notes: 145795452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 145894013140SBarry Smith do not need to do it yourself. 145994013140SBarry Smith 146094013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1461bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146294013140SBarry Smith 1463bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 146494013140SBarry Smith internally by PETSc. 146594013140SBarry Smith 1466bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1467bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 146894013140SBarry Smith 14691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1470aab9d709SJed Brown @*/ 1471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1472d71ae5a4SJacob Faibussowitsch { 147347c6ae99SBarry Smith PetscFunctionBegin; 1474171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14754f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14769566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1478dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 147976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1480c6b011d8SStefano Zampini DM mdm; 1481c6b011d8SStefano Zampini 14829566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14837a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1484c6b011d8SStefano Zampini } 1485e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1486e5e52638SMatthew G. Knepley if (dm->Nf) { 1487e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1488649ef022SMatthew Knepley PetscInt Nf, f; 1489e571a35bSMatthew G. Knepley 14909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1491649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1492649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14939566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14949566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14959566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1496649ef022SMatthew Knepley break; 1497e571a35bSMatthew G. Knepley } 1498649ef022SMatthew Knepley } 1499649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1500649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15019566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15029566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15039566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1504e571a35bSMatthew G. Knepley } 1505e571a35bSMatthew G. Knepley } 1506e571a35bSMatthew G. Knepley } 15079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150947c6ae99SBarry Smith } 151047c6ae99SBarry Smith 1511732e2eb9SMatthew G Knepley /*@ 1512a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1513a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1514a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1515aa0f6e3cSJed Brown 151620f4b53cSBarry Smith Logically Collective 1517aa0f6e3cSJed Brown 1518aa0f6e3cSJed Brown Input Parameters: 1519bb7acecfSBarry Smith + dm - the `DM` 1520bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1521aa0f6e3cSJed Brown 1522aa0f6e3cSJed Brown Level: developer 1523aa0f6e3cSJed Brown 1524a4e35b19SJacob Faibussowitsch Notes: 1525a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1526a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1527a4e35b19SJacob Faibussowitsch 15281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1529aa0f6e3cSJed Brown @*/ 1530d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1531d71ae5a4SJacob Faibussowitsch { 1532aa0f6e3cSJed Brown PetscFunctionBegin; 1533aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1534aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1536aa0f6e3cSJed Brown } 1537aa0f6e3cSJed Brown 1538aa0f6e3cSJed Brown /*@ 1539bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1540732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1541732e2eb9SMatthew G Knepley 154220f4b53cSBarry Smith Logically Collective 1543732e2eb9SMatthew G Knepley 1544d8d19677SJose E. Roman Input Parameters: 1545bb7acecfSBarry Smith + dm - the `DM` 1546bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1547732e2eb9SMatthew G Knepley 154820f4b53cSBarry Smith Options Database Key: 1549bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1550f27dd7c6SMatthew G. Knepley 155120f4b53cSBarry Smith Level: developer 155220f4b53cSBarry Smith 15531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1554732e2eb9SMatthew G Knepley @*/ 1555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1556d71ae5a4SJacob Faibussowitsch { 1557732e2eb9SMatthew G Knepley PetscFunctionBegin; 1558732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1559732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1561732e2eb9SMatthew G Knepley } 1562732e2eb9SMatthew G Knepley 1563b06ff27eSHong Zhang /*@ 1564bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1565bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1566b06ff27eSHong Zhang 156720f4b53cSBarry Smith Logically Collective 1568b06ff27eSHong Zhang 1569d8d19677SJose E. Roman Input Parameters: 1570bb7acecfSBarry Smith + dm - the `DM` 1571da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1572b06ff27eSHong Zhang 1573b06ff27eSHong Zhang Level: developer 1574bb7acecfSBarry Smith 15751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1576b06ff27eSHong Zhang @*/ 1577d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1578d71ae5a4SJacob Faibussowitsch { 1579b06ff27eSHong Zhang PetscFunctionBegin; 1580b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1581b06ff27eSHong Zhang dm->structure_only = only; 15823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1583b06ff27eSHong Zhang } 1584b06ff27eSHong Zhang 1585863027abSJed Brown /*@ 1586863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1587863027abSJed Brown 158820f4b53cSBarry Smith Logically Collective 1589863027abSJed Brown 1590863027abSJed Brown Input Parameters: 1591863027abSJed Brown + dm - the `DM` 1592863027abSJed Brown - btype - block by topological point or field node 1593863027abSJed Brown 159420f4b53cSBarry Smith Options Database Key: 15950e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1596863027abSJed Brown 159720f4b53cSBarry Smith Level: advanced 159820f4b53cSBarry Smith 15991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1600863027abSJed Brown @*/ 1601863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1602863027abSJed Brown { 1603863027abSJed Brown PetscFunctionBegin; 1604863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1605863027abSJed Brown dm->blocking_type = btype; 16063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1607863027abSJed Brown } 1608863027abSJed Brown 1609863027abSJed Brown /*@ 1610863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1611863027abSJed Brown 1612863027abSJed Brown Not Collective 1613863027abSJed Brown 16142fe279fdSBarry Smith Input Parameter: 1615863027abSJed Brown . dm - the `DM` 1616863027abSJed Brown 16172fe279fdSBarry Smith Output Parameter: 1618863027abSJed Brown . btype - block by topological point or field node 1619863027abSJed Brown 1620863027abSJed Brown Level: advanced 1621863027abSJed Brown 16221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1623863027abSJed Brown @*/ 1624863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1625863027abSJed Brown { 1626863027abSJed Brown PetscFunctionBegin; 1627863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16284f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1629863027abSJed Brown *btype = dm->blocking_type; 16303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1631863027abSJed Brown } 1632863027abSJed Brown 1633a89ea682SMatthew G Knepley /*@C 1634bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1635a89ea682SMatthew G Knepley 1636a89ea682SMatthew G Knepley Not Collective 1637a89ea682SMatthew G Knepley 1638a89ea682SMatthew G Knepley Input Parameters: 1639bb7acecfSBarry Smith + dm - the `DM` object 1640a5b23f4aSJose E. Roman . count - The minimum size 164120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1642a89ea682SMatthew G Knepley 1643a89ea682SMatthew G Knepley Output Parameter: 164460225df5SJacob Faibussowitsch . mem - the work array 1645a89ea682SMatthew G Knepley 1646a89ea682SMatthew G Knepley Level: developer 1647a89ea682SMatthew G Knepley 1648bb7acecfSBarry Smith Note: 1649da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1650bb7acecfSBarry Smith 1651bb7acecfSBarry Smith The array may contain nonzero values 1652bb7acecfSBarry Smith 16531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1654a89ea682SMatthew G Knepley @*/ 1655d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1656d71ae5a4SJacob Faibussowitsch { 1657aa1993deSMatthew G Knepley DMWorkLink link; 165869291d52SBarry Smith PetscMPIInt dsize; 1659a89ea682SMatthew G Knepley 1660a89ea682SMatthew G Knepley PetscFunctionBegin; 1661a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16624f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1663442f3b32SStefano Zampini if (!count) { 1664442f3b32SStefano Zampini *(void **)mem = NULL; 1665442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1666442f3b32SStefano Zampini } 1667aa1993deSMatthew G Knepley if (dm->workin) { 1668aa1993deSMatthew G Knepley link = dm->workin; 1669aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1670aa1993deSMatthew G Knepley } else { 16714dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1672a89ea682SMatthew G Knepley } 1673b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1674b77fa653SStefano Zampini Get size directly */ 1675b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1676b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1677b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1678b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1679b77fa653SStefano Zampini #endif 1680b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1681b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1682b77fa653SStefano Zampini #endif 1683b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1684b77fa653SStefano Zampini 16855056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16869566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16879566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1688854ce69bSBarry Smith link->bytes = dsize * count; 1689aa1993deSMatthew G Knepley } 1690aa1993deSMatthew G Knepley link->next = dm->workout; 1691aa1993deSMatthew G Knepley dm->workout = link; 1692cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 169300d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 169400d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 169500d952a4SJed Brown #endif 1696aa1993deSMatthew G Knepley *(void **)mem = link->mem; 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1698a89ea682SMatthew G Knepley } 1699a89ea682SMatthew G Knepley 1700aa1993deSMatthew G Knepley /*@C 1701bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1702aa1993deSMatthew G Knepley 1703aa1993deSMatthew G Knepley Not Collective 1704aa1993deSMatthew G Knepley 1705aa1993deSMatthew G Knepley Input Parameters: 1706bb7acecfSBarry Smith + dm - the `DM` object 1707a5b23f4aSJose E. Roman . count - The minimum size 170820f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1709aa1993deSMatthew G Knepley 1710aa1993deSMatthew G Knepley Output Parameter: 171160225df5SJacob Faibussowitsch . mem - the work array 1712aa1993deSMatthew G Knepley 1713aa1993deSMatthew G Knepley Level: developer 1714aa1993deSMatthew G Knepley 171560225df5SJacob Faibussowitsch Developer Notes: 1716bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1717147403d9SBarry Smith 17181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1719aa1993deSMatthew G Knepley @*/ 1720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1721d71ae5a4SJacob Faibussowitsch { 1722aa1993deSMatthew G Knepley DMWorkLink *p, link; 1723aa1993deSMatthew G Knepley 1724aa1993deSMatthew G Knepley PetscFunctionBegin; 1725aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17264f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1727a4e35b19SJacob Faibussowitsch (void)count; 1728a4e35b19SJacob Faibussowitsch (void)dtype; 1729442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1730aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1731aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1732aa1993deSMatthew G Knepley *p = link->next; 1733aa1993deSMatthew G Knepley link->next = dm->workin; 1734aa1993deSMatthew G Knepley dm->workin = link; 17350298fd71SBarry Smith *(void **)mem = NULL; 17363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1737aa1993deSMatthew G Knepley } 1738aa1993deSMatthew G Knepley } 1739aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1740aa1993deSMatthew G Knepley } 1741e7c4fc90SDmitry Karpeev 17428cda7954SMatthew G. Knepley /*@C 1743bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1744bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17458cda7954SMatthew G. Knepley 174620f4b53cSBarry Smith Logically Collective; No Fortran Support 17478cda7954SMatthew G. Knepley 17488cda7954SMatthew G. Knepley Input Parameters: 1749bb7acecfSBarry Smith + dm - The `DM` 17508cda7954SMatthew G. Knepley . field - The field number for the nullspace 17518cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17528cda7954SMatthew G. Knepley 175320f4b53cSBarry Smith Calling sequence of `nullsp`: 1754bb7acecfSBarry Smith + dm - The present `DM` 1755bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1756147403d9SBarry Smith . field - The field number in dm 1757147403d9SBarry Smith - nullSpace - The nullspace for the given field 17588cda7954SMatthew G. Knepley 175949762cbcSSatish Balay Level: intermediate 176049762cbcSSatish Balay 17611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1762147403d9SBarry Smith @*/ 1763a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1764d71ae5a4SJacob Faibussowitsch { 1765435a35e8SMatthew G Knepley PetscFunctionBegin; 1766435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17677a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1768435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1770435a35e8SMatthew G Knepley } 1771435a35e8SMatthew G Knepley 17728cda7954SMatthew G. Knepley /*@C 1773bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17748cda7954SMatthew G. Knepley 177520f4b53cSBarry Smith Not Collective; No Fortran Support 17768cda7954SMatthew G. Knepley 17778cda7954SMatthew G. Knepley Input Parameters: 1778bb7acecfSBarry Smith + dm - The `DM` 17798cda7954SMatthew G. Knepley - field - The field number for the nullspace 17808cda7954SMatthew G. Knepley 17818cda7954SMatthew G. Knepley Output Parameter: 17828cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17838cda7954SMatthew G. Knepley 178420f4b53cSBarry Smith Calling sequence of `nullsp`: 1785147403d9SBarry Smith + dm - The present DM 1786147403d9SBarry Smith . origField - The field number given above, in the original DM 1787147403d9SBarry Smith . field - The field number in dm 1788147403d9SBarry Smith - nullSpace - The nullspace for the given field 17898cda7954SMatthew G. Knepley 179049762cbcSSatish Balay Level: intermediate 179149762cbcSSatish Balay 17921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1793147403d9SBarry Smith @*/ 1794a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1795d71ae5a4SJacob Faibussowitsch { 17960a50eb56SMatthew G. Knepley PetscFunctionBegin; 17970a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17984f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 17997a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18000a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18020a50eb56SMatthew G. Knepley } 18030a50eb56SMatthew G. Knepley 18048cda7954SMatthew G. Knepley /*@C 1805bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18068cda7954SMatthew G. Knepley 180720f4b53cSBarry Smith Logically Collective; No Fortran Support 18088cda7954SMatthew G. Knepley 18098cda7954SMatthew G. Knepley Input Parameters: 1810bb7acecfSBarry Smith + dm - The `DM` 18118cda7954SMatthew G. Knepley . field - The field number for the nullspace 18128cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18138cda7954SMatthew G. Knepley 181420f4b53cSBarry Smith Calling sequence of `nullsp`: 1815bb7acecfSBarry Smith + dm - The present `DM` 1816bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1817147403d9SBarry Smith . field - The field number in dm 1818147403d9SBarry Smith - nullSpace - The nullspace for the given field 18198cda7954SMatthew G. Knepley 182049762cbcSSatish Balay Level: intermediate 182149762cbcSSatish Balay 18221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1823bb7acecfSBarry Smith `MatNullSpace` 1824147403d9SBarry Smith @*/ 1825a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1826d71ae5a4SJacob Faibussowitsch { 1827f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1828f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18297a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1830f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1832f9d4088aSMatthew G. Knepley } 1833f9d4088aSMatthew G. Knepley 18348cda7954SMatthew G. Knepley /*@C 1835bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18368cda7954SMatthew G. Knepley 183720f4b53cSBarry Smith Not Collective; No Fortran Support 18388cda7954SMatthew G. Knepley 18398cda7954SMatthew G. Knepley Input Parameters: 1840bb7acecfSBarry Smith + dm - The `DM` 18418cda7954SMatthew G. Knepley - field - The field number for the nullspace 18428cda7954SMatthew G. Knepley 18438cda7954SMatthew G. Knepley Output Parameter: 18448cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18458cda7954SMatthew G. Knepley 184620f4b53cSBarry Smith Calling sequence of `nullsp`: 1847bb7acecfSBarry Smith + dm - The present `DM` 1848bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1849147403d9SBarry Smith . field - The field number in dm 1850147403d9SBarry Smith - nullSpace - The nullspace for the given field 18518cda7954SMatthew G. Knepley 185249762cbcSSatish Balay Level: intermediate 185349762cbcSSatish Balay 18541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1855bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1856147403d9SBarry Smith @*/ 1857a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1858d71ae5a4SJacob Faibussowitsch { 1859f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1860f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18614f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18627a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1863f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1865f9d4088aSMatthew G. Knepley } 1866f9d4088aSMatthew G. Knepley 18674f3b5142SJed Brown /*@C 1868bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18694d343eeaSMatthew G Knepley 187020f4b53cSBarry Smith Not Collective; No Fortran Support 18714d343eeaSMatthew G Knepley 18724d343eeaSMatthew G Knepley Input Parameter: 1873bb7acecfSBarry Smith . dm - the `DM` object 18744d343eeaSMatthew G Knepley 18754d343eeaSMatthew G Knepley Output Parameters: 187620f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 187720f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 187820f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18794d343eeaSMatthew G Knepley 18804d343eeaSMatthew G Knepley Level: intermediate 18814d343eeaSMatthew G Knepley 1882bb7acecfSBarry Smith Note: 188321c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1884bb7acecfSBarry Smith `PetscFree()`, every entry of fields should be destroyed with `ISDestroy()`, and both arrays should be freed with 1885bb7acecfSBarry Smith `PetscFree()`. 188621c9b008SJed Brown 188760225df5SJacob Faibussowitsch Developer Notes: 1888bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1889bb7acecfSBarry Smith likely be removed. 1890bb7acecfSBarry Smith 18911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1892bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18934d343eeaSMatthew G Knepley @*/ 1894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1895d71ae5a4SJacob Faibussowitsch { 189637d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 18974d343eeaSMatthew G Knepley 18984d343eeaSMatthew G Knepley PetscFunctionBegin; 18994d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190069ca1f37SDmitry Karpeev if (numFields) { 19014f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 190269ca1f37SDmitry Karpeev *numFields = 0; 190369ca1f37SDmitry Karpeev } 190437d0c07bSMatthew G Knepley if (fieldNames) { 19054f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19060298fd71SBarry Smith *fieldNames = NULL; 190769ca1f37SDmitry Karpeev } 190869ca1f37SDmitry Karpeev if (fields) { 19094f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19100298fd71SBarry Smith *fields = NULL; 191169ca1f37SDmitry Karpeev } 19129566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 191337d0c07bSMatthew G Knepley if (section) { 19143a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 191537d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 191637d0c07bSMatthew G Knepley 19179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19199566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192237d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 192437d0c07bSMatthew G Knepley } 192537d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 192637d0c07bSMatthew G Knepley PetscInt gdof; 192737d0c07bSMatthew G Knepley 19289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 192937d0c07bSMatthew G Knepley if (gdof > 0) { 193037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19313a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 193237d0c07bSMatthew G Knepley 19339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19353a544194SStefano Zampini fpdof = fdof - fcdof; 19363a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19373a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19383a544194SStefano Zampini fieldNc[f] = 1; 19393a544194SStefano Zampini } 19403a544194SStefano Zampini fieldSizes[f] += fpdof; 194137d0c07bSMatthew G Knepley } 194237d0c07bSMatthew G Knepley } 194337d0c07bSMatthew G Knepley } 194437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 194637d0c07bSMatthew G Knepley fieldSizes[f] = 0; 194737d0c07bSMatthew G Knepley } 194837d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194937d0c07bSMatthew G Knepley PetscInt gdof, goff; 195037d0c07bSMatthew G Knepley 19519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195237d0c07bSMatthew G Knepley if (gdof > 0) { 19539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 195437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 195537d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 195637d0c07bSMatthew G Knepley 19579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1959ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196037d0c07bSMatthew G Knepley } 196137d0c07bSMatthew G Knepley } 196237d0c07bSMatthew G Knepley } 19638865f1eaSKarl Rupp if (numFields) *numFields = nF; 196437d0c07bSMatthew G Knepley if (fieldNames) { 19659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 196637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196737d0c07bSMatthew G Knepley const char *fieldName; 196837d0c07bSMatthew G Knepley 19699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19709566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197137d0c07bSMatthew G Knepley } 197237d0c07bSMatthew G Knepley } 197337d0c07bSMatthew G Knepley if (fields) { 19749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 197537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19763a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19773a544194SStefano Zampini 19789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19793a544194SStefano Zampini in[0] = -fieldNc[f]; 19803a544194SStefano Zampini in[1] = fieldNc[f]; 19811c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19823a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19839566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 198437d0c07bSMatthew G Knepley } 198537d0c07bSMatthew G Knepley } 19869566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1987dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19894d343eeaSMatthew G Knepley } 19904d343eeaSMatthew G Knepley 199116621825SDmitry Karpeev /*@C 1992bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1993a4e35b19SJacob Faibussowitsch corresponding to different fields. 1994e7c4fc90SDmitry Karpeev 199520f4b53cSBarry Smith Not Collective; No Fortran Support 1996e7c4fc90SDmitry Karpeev 1997e7c4fc90SDmitry Karpeev Input Parameter: 1998bb7acecfSBarry Smith . dm - the `DM` object 1999e7c4fc90SDmitry Karpeev 2000e7c4fc90SDmitry Karpeev Output Parameters: 200120f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 200220f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 200320f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 200420f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2005e7c4fc90SDmitry Karpeev 2006e7c4fc90SDmitry Karpeev Level: intermediate 2007e7c4fc90SDmitry Karpeev 2008a4e35b19SJacob Faibussowitsch Notes: 2009a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2010a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2011a4e35b19SJacob Faibussowitsch 2012a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2013a4e35b19SJacob Faibussowitsch 2014e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2015bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2016bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2017e7c4fc90SDmitry Karpeev 201860225df5SJacob Faibussowitsch Developer Notes: 2019bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2020bb7acecfSBarry Smith 202160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2022e7c4fc90SDmitry Karpeev @*/ 2023d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2024d71ae5a4SJacob Faibussowitsch { 2025e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2026e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20278865f1eaSKarl Rupp if (len) { 20284f572ea9SToby Isaac PetscAssertPointer(len, 2); 20298865f1eaSKarl Rupp *len = 0; 20308865f1eaSKarl Rupp } 20318865f1eaSKarl Rupp if (namelist) { 20324f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2033ea78f98cSLisandro Dalcin *namelist = NULL; 20348865f1eaSKarl Rupp } 20358865f1eaSKarl Rupp if (islist) { 20364f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2037ea78f98cSLisandro Dalcin *islist = NULL; 20388865f1eaSKarl Rupp } 20398865f1eaSKarl Rupp if (dmlist) { 20404f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2041ea78f98cSLisandro Dalcin *dmlist = NULL; 20428865f1eaSKarl Rupp } 2043f3f0edfdSDmitry Karpeev /* 2044f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2045f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2046f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2047f3f0edfdSDmitry Karpeev */ 20487a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 204916621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2050435a35e8SMatthew G Knepley PetscSection section; 2051435a35e8SMatthew G Knepley PetscInt numFields, f; 2052435a35e8SMatthew G Knepley 20539566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20549566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2055435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2056f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20579566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20589566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20599566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2060435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2061435a35e8SMatthew G Knepley const char *fieldName; 2062435a35e8SMatthew G Knepley 20639566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 206403dc3394SMatthew G. Knepley if (namelist) { 20659566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20669566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2067435a35e8SMatthew G Knepley } 206803dc3394SMatthew G. Knepley } 2069435a35e8SMatthew G Knepley } else { 20709566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2071e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20720298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2073e7c4fc90SDmitry Karpeev } 2074dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207616621825SDmitry Karpeev } 207716621825SDmitry Karpeev 2078412a4547SAlexis Marboeuf /*@C 207920f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 208020f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2081435a35e8SMatthew G Knepley 2082435a35e8SMatthew G Knepley Not collective 2083435a35e8SMatthew G Knepley 2084435a35e8SMatthew G Knepley Input Parameters: 2085bb7acecfSBarry Smith + dm - The `DM` object 2086bb7acecfSBarry Smith . numFields - The number of fields to select 20872adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2088435a35e8SMatthew G Knepley 2089435a35e8SMatthew G Knepley Output Parameters: 2090bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2091bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2092435a35e8SMatthew G Knepley 209320f4b53cSBarry Smith Level: intermediate 209420f4b53cSBarry Smith 2095bb7acecfSBarry Smith Note: 2096bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 20975d3b26e6SMatthew G. Knepley 209860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2099435a35e8SMatthew G Knepley @*/ 2100d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2101d71ae5a4SJacob Faibussowitsch { 2102435a35e8SMatthew G Knepley PetscFunctionBegin; 2103435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21044f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21054f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21064f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2107dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2109435a35e8SMatthew G Knepley } 2110435a35e8SMatthew G Knepley 21112adcc780SMatthew G. Knepley /*@C 2112bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21132adcc780SMatthew G. Knepley 21142adcc780SMatthew G. Knepley Not collective 21152adcc780SMatthew G. Knepley 2116d8d19677SJose E. Roman Input Parameters: 2117bb7acecfSBarry Smith + dms - The `DM` objects 2118bb7acecfSBarry Smith - n - The number of `DM`s 21192adcc780SMatthew G. Knepley 21202adcc780SMatthew G. Knepley Output Parameters: 2121bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2122bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21232adcc780SMatthew G. Knepley 212420f4b53cSBarry Smith Level: intermediate 212520f4b53cSBarry Smith 2126bb7acecfSBarry Smith Note: 2127bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21285d3b26e6SMatthew G. Knepley 21291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 21302adcc780SMatthew G. Knepley @*/ 2131d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2132d71ae5a4SJacob Faibussowitsch { 21332adcc780SMatthew G. Knepley PetscInt i; 21342adcc780SMatthew G. Knepley 21352adcc780SMatthew G. Knepley PetscFunctionBegin; 21364f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2137ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21384f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21394f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2140bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2141bb7acecfSBarry Smith if (n) { 2142b9d85ea2SLisandro Dalcin DM dm = dms[0]; 214300045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2144dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21452adcc780SMatthew G. Knepley } 21463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21472adcc780SMatthew G. Knepley } 21482adcc780SMatthew G. Knepley 214916621825SDmitry Karpeev /*@C 2150a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2151a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 215216621825SDmitry Karpeev 215320f4b53cSBarry Smith Not Collective 215416621825SDmitry Karpeev 215516621825SDmitry Karpeev Input Parameter: 2156bb7acecfSBarry Smith . dm - the `DM` object 215716621825SDmitry Karpeev 215816621825SDmitry Karpeev Output Parameters: 215920f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 216020f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 21610298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 21620298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 216320f4b53cSBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or NULL, if not requested; if `NULL` is returned, no `DM`s are defined) 216416621825SDmitry Karpeev 216516621825SDmitry Karpeev Level: intermediate 216616621825SDmitry Karpeev 2167bb7acecfSBarry Smith Note: 2168a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2169a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2170a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2171a4e35b19SJacob Faibussowitsch 2172a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2173a4e35b19SJacob Faibussowitsch 217416621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 2175bb7acecfSBarry Smith `PetscFree()`, every entry of is should be destroyed with `ISDestroy()`, every entry of dm should be destroyed with `DMDestroy()`, 2176bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 217716621825SDmitry Karpeev 2178a4e35b19SJacob Faibussowitsch Developer Notes: 217920f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2180bb7acecfSBarry Smith 218160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 218216621825SDmitry Karpeev @*/ 2183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2184d71ae5a4SJacob Faibussowitsch { 2185be081cd6SPeter Brune DMSubDomainHookLink link; 2186be081cd6SPeter Brune PetscInt i, l; 218716621825SDmitry Karpeev 218816621825SDmitry Karpeev PetscFunctionBegin; 218916621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21909371c9d4SSatish Balay if (n) { 21914f572ea9SToby Isaac PetscAssertPointer(n, 2); 21929371c9d4SSatish Balay *n = 0; 21939371c9d4SSatish Balay } 21949371c9d4SSatish Balay if (namelist) { 21954f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 21969371c9d4SSatish Balay *namelist = NULL; 21979371c9d4SSatish Balay } 21989371c9d4SSatish Balay if (innerislist) { 21994f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22009371c9d4SSatish Balay *innerislist = NULL; 22019371c9d4SSatish Balay } 22029371c9d4SSatish Balay if (outerislist) { 22034f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22049371c9d4SSatish Balay *outerislist = NULL; 22059371c9d4SSatish Balay } 22069371c9d4SSatish Balay if (dmlist) { 22074f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22089371c9d4SSatish Balay *dmlist = NULL; 22099371c9d4SSatish Balay } 2210f3f0edfdSDmitry Karpeev /* 2211f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2212f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2213f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2214f3f0edfdSDmitry Karpeev */ 22157a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 221616621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2217dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 221814a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2219f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2220be081cd6SPeter Brune for (i = 0; i < l; i++) { 2221be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22229566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2223be081cd6SPeter Brune } 2224648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2225e7c4fc90SDmitry Karpeev } 222614a18fd3SPeter Brune } 2227bb7acecfSBarry Smith if (n) *n = l; 222814a18fd3SPeter Brune } 22293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2230e30e807fSPeter Brune } 2231e30e807fSPeter Brune 2232e30e807fSPeter Brune /*@C 2233e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2234e30e807fSPeter Brune 223520f4b53cSBarry Smith Not Collective 2236e30e807fSPeter Brune 2237e30e807fSPeter Brune Input Parameters: 2238bb7acecfSBarry Smith + dm - the `DM` object 2239e30e807fSPeter Brune . n - the number of subdomain scatters 2240e30e807fSPeter Brune - subdms - the local subdomains 2241e30e807fSPeter Brune 2242e30e807fSPeter Brune Output Parameters: 22436b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2244e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2245e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2246e30e807fSPeter Brune 224720f4b53cSBarry Smith Level: developer 224820f4b53cSBarry Smith 2249bb7acecfSBarry Smith Note: 2250bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2251e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2252e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2253e30e807fSPeter Brune solution and residual data. 2254e30e807fSPeter Brune 2255a4e35b19SJacob Faibussowitsch Developer Notes: 2256a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2257a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2258bb7acecfSBarry Smith 22591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2260e30e807fSPeter Brune @*/ 2261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2262d71ae5a4SJacob Faibussowitsch { 2263e30e807fSPeter Brune PetscFunctionBegin; 2264e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22654f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2266dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2268e7c4fc90SDmitry Karpeev } 2269e7c4fc90SDmitry Karpeev 227047c6ae99SBarry Smith /*@ 2271bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 227247c6ae99SBarry Smith 227320f4b53cSBarry Smith Collective 227447c6ae99SBarry Smith 2275d8d19677SJose E. Roman Input Parameters: 2276bb7acecfSBarry Smith + dm - the `DM` object 2277bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 227847c6ae99SBarry Smith 227947c6ae99SBarry Smith Output Parameter: 228020f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2281ae0a1c52SMatthew G Knepley 228220f4b53cSBarry Smith Options Database Key: 2283412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2284412e9a14SMatthew G. Knepley 228547c6ae99SBarry Smith Level: developer 228647c6ae99SBarry Smith 228720f4b53cSBarry Smith Note: 228820f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 228920f4b53cSBarry Smith 22901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 229147c6ae99SBarry Smith @*/ 2292d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2293d71ae5a4SJacob Faibussowitsch { 2294c833c3b5SJed Brown DMRefineHookLink link; 229547c6ae99SBarry Smith 229647c6ae99SBarry Smith PetscFunctionBegin; 2297732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22989566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2299dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23004057135bSMatthew G Knepley if (*dmf) { 230143842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23028865f1eaSKarl Rupp 23039566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23048865f1eaSKarl Rupp 2305644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23060598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2307656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23088865f1eaSKarl Rupp 23099566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2310c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23111baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2312c833c3b5SJed Brown } 2313c833c3b5SJed Brown } 23149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2316c833c3b5SJed Brown } 2317c833c3b5SJed Brown 2318bb9467b5SJed Brown /*@C 2319c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2320c833c3b5SJed Brown 232120f4b53cSBarry Smith Logically Collective; No Fortran Support 2322c833c3b5SJed Brown 23234165533cSJose E. Roman Input Parameters: 2324bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2325bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2326f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 232720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2328c833c3b5SJed Brown 232920f4b53cSBarry Smith Calling sequence of `refinehook`: 2330bb7acecfSBarry Smith + coarse - coarse level `DM` 2331bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2332c833c3b5SJed Brown - ctx - optional user-defined function context 2333c833c3b5SJed Brown 233420f4b53cSBarry Smith Calling sequence of `interphook`: 2335bb7acecfSBarry Smith + coarse - coarse level `DM` 2336c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2337bb7acecfSBarry Smith . fine - fine level `DM` to update 2338c833c3b5SJed Brown - ctx - optional user-defined function context 2339c833c3b5SJed Brown 2340c833c3b5SJed Brown Level: advanced 2341c833c3b5SJed Brown 2342c833c3b5SJed Brown Notes: 2343bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2344bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2345bb7acecfSBarry Smith 2346bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2347c833c3b5SJed Brown 2348c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2349c833c3b5SJed Brown 23501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2351c833c3b5SJed Brown @*/ 2352a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2353d71ae5a4SJacob Faibussowitsch { 2354c833c3b5SJed Brown DMRefineHookLink link, *p; 2355c833c3b5SJed Brown 2356c833c3b5SJed Brown PetscFunctionBegin; 2357c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23583d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23593ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23603d8e3701SJed Brown } 23619566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2362c833c3b5SJed Brown link->refinehook = refinehook; 2363c833c3b5SJed Brown link->interphook = interphook; 2364c833c3b5SJed Brown link->ctx = ctx; 23650298fd71SBarry Smith link->next = NULL; 2366c833c3b5SJed Brown *p = link; 23673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2368c833c3b5SJed Brown } 2369c833c3b5SJed Brown 23703d8e3701SJed Brown /*@C 2371bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2372bb7acecfSBarry Smith a nonlinear problem to a finer grid 23733d8e3701SJed Brown 237420f4b53cSBarry Smith Logically Collective; No Fortran Support 23753d8e3701SJed Brown 23764165533cSJose E. Roman Input Parameters: 2377bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2378bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2379bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 238020f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23813d8e3701SJed Brown 23823d8e3701SJed Brown Level: advanced 23833d8e3701SJed Brown 2384bb7acecfSBarry Smith Note: 23853d8e3701SJed Brown This function does nothing if the hook is not in the list. 23863d8e3701SJed Brown 23871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23883d8e3701SJed Brown @*/ 2389d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2390d71ae5a4SJacob Faibussowitsch { 23913d8e3701SJed Brown DMRefineHookLink link, *p; 23923d8e3701SJed Brown 23933d8e3701SJed Brown PetscFunctionBegin; 23943d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23953d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 23963d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 23973d8e3701SJed Brown link = *p; 23983d8e3701SJed Brown *p = link->next; 23999566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24003d8e3701SJed Brown break; 24013d8e3701SJed Brown } 24023d8e3701SJed Brown } 24033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24043d8e3701SJed Brown } 24053d8e3701SJed Brown 2406c833c3b5SJed Brown /*@ 2407bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2408c833c3b5SJed Brown 2409c833c3b5SJed Brown Collective if any hooks are 2410c833c3b5SJed Brown 24114165533cSJose E. Roman Input Parameters: 2412bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2413bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2414bb7acecfSBarry Smith - fine - finer `DM` to update 2415c833c3b5SJed Brown 2416c833c3b5SJed Brown Level: developer 2417c833c3b5SJed Brown 241860225df5SJacob Faibussowitsch Developer Notes: 2419bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2420bb7acecfSBarry Smith an API with consistent terminology. 2421bb7acecfSBarry Smith 24221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2423c833c3b5SJed Brown @*/ 2424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2425d71ae5a4SJacob Faibussowitsch { 2426c833c3b5SJed Brown DMRefineHookLink link; 2427c833c3b5SJed Brown 2428c833c3b5SJed Brown PetscFunctionBegin; 2429c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24301baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24314057135bSMatthew G Knepley } 24323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243347c6ae99SBarry Smith } 243447c6ae99SBarry Smith 2435eb3f98d2SBarry Smith /*@ 24361f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24371f3379b2SToby Isaac 243820f4b53cSBarry Smith Collective 24391f3379b2SToby Isaac 24404165533cSJose E. Roman Input Parameters: 2441bb7acecfSBarry Smith + coarse - coarse `DM` 2442bb7acecfSBarry Smith . fine - fine `DM` 2443bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2444bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2445bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24461f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24471f3379b2SToby Isaac 24484165533cSJose E. Roman Output Parameter: 24491f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24501f3379b2SToby Isaac 24511f3379b2SToby Isaac Level: developer 24521f3379b2SToby Isaac 2453bb7acecfSBarry Smith Note: 2454bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24551f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24561f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24571f3379b2SToby Isaac slope-limiting reconstruction. 24581f3379b2SToby Isaac 245960225df5SJacob Faibussowitsch Developer Notes: 2460bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2461bb7acecfSBarry Smith 24621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24631f3379b2SToby Isaac @*/ 2464d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2465d71ae5a4SJacob Faibussowitsch { 24661f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24671f3379b2SToby Isaac 24681f3379b2SToby Isaac PetscFunctionBegin; 24691f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24701f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24711f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24721f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24731f3379b2SToby Isaac 24749566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24751f3379b2SToby Isaac if (interpsol) { 24769566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24771f3379b2SToby Isaac } else if (interp) { 24789566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 247998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24811f3379b2SToby Isaac } 24821f3379b2SToby Isaac 24831f3379b2SToby Isaac /*@ 2484bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2485eb3f98d2SBarry Smith 2486eb3f98d2SBarry Smith Not Collective 2487eb3f98d2SBarry Smith 2488eb3f98d2SBarry Smith Input Parameter: 2489bb7acecfSBarry Smith . dm - the `DM` object 2490eb3f98d2SBarry Smith 2491eb3f98d2SBarry Smith Output Parameter: 2492eb3f98d2SBarry Smith . level - number of refinements 2493eb3f98d2SBarry Smith 2494eb3f98d2SBarry Smith Level: developer 2495eb3f98d2SBarry Smith 2496bb7acecfSBarry Smith Note: 2497bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2498bb7acecfSBarry Smith 24991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2500eb3f98d2SBarry Smith @*/ 2501d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2502d71ae5a4SJacob Faibussowitsch { 2503eb3f98d2SBarry Smith PetscFunctionBegin; 2504eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2505eb3f98d2SBarry Smith *level = dm->levelup; 25063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2507eb3f98d2SBarry Smith } 2508eb3f98d2SBarry Smith 2509fef3a512SBarry Smith /*@ 2510bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2511fef3a512SBarry Smith 2512fef3a512SBarry Smith Not Collective 2513fef3a512SBarry Smith 2514d8d19677SJose E. Roman Input Parameters: 2515bb7acecfSBarry Smith + dm - the `DM` object 2516fef3a512SBarry Smith - level - number of refinements 2517fef3a512SBarry Smith 2518fef3a512SBarry Smith Level: advanced 2519fef3a512SBarry Smith 252095452b02SPatrick Sanan Notes: 2521bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2522fef3a512SBarry Smith 2523bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2524bb7acecfSBarry Smith 25251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2526fef3a512SBarry Smith @*/ 2527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2528d71ae5a4SJacob Faibussowitsch { 2529fef3a512SBarry Smith PetscFunctionBegin; 2530fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2531fef3a512SBarry Smith dm->levelup = level; 25323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2533fef3a512SBarry Smith } 2534fef3a512SBarry Smith 2535d410b0cfSMatthew G. Knepley /*@ 2536bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2537d410b0cfSMatthew G. Knepley 253820f4b53cSBarry Smith Collective 2539d410b0cfSMatthew G. Knepley 2540f1a722f8SMatthew G. Knepley Input Parameters: 2541bb7acecfSBarry Smith + dm - the `DM` object 2542d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2543d410b0cfSMatthew G. Knepley 2544d410b0cfSMatthew G. Knepley Output Parameter: 254520f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2546d410b0cfSMatthew G. Knepley 2547d410b0cfSMatthew G. Knepley Level: developer 2548d410b0cfSMatthew G. Knepley 254920f4b53cSBarry Smith Note: 255020f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 255120f4b53cSBarry Smith 25521cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2553d410b0cfSMatthew G. Knepley @*/ 2554d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2555d71ae5a4SJacob Faibussowitsch { 2556d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2557d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2558dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2559d410b0cfSMatthew G. Knepley if (*dme) { 2560d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25619566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2562d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25639566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2564d410b0cfSMatthew G. Knepley } 25653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2566d410b0cfSMatthew G. Knepley } 2567d410b0cfSMatthew G. Knepley 2568d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2569d71ae5a4SJacob Faibussowitsch { 2570ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2571ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25724f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2573ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2575ca3d3a14SMatthew G. Knepley } 2576ca3d3a14SMatthew G. Knepley 2577d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2578d71ae5a4SJacob Faibussowitsch { 2579ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2580ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25814f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2582ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2584ca3d3a14SMatthew G. Knepley } 2585ca3d3a14SMatthew G. Knepley 2586ca3d3a14SMatthew G. Knepley /*@ 2587bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2588ca3d3a14SMatthew G. Knepley 2589ca3d3a14SMatthew G. Knepley Input Parameter: 259020f4b53cSBarry Smith . dm - The `DM` 2591ca3d3a14SMatthew G. Knepley 2592ca3d3a14SMatthew G. Knepley Output Parameter: 259320f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2594ca3d3a14SMatthew G. Knepley 2595ca3d3a14SMatthew G. Knepley Level: developer 2596ca3d3a14SMatthew G. Knepley 25971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2598ca3d3a14SMatthew G. Knepley @*/ 2599d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2600d71ae5a4SJacob Faibussowitsch { 2601ca3d3a14SMatthew G. Knepley Vec tv; 2602ca3d3a14SMatthew G. Knepley 2603ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2604ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26054f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26069566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2607ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2609ca3d3a14SMatthew G. Knepley } 2610ca3d3a14SMatthew G. Knepley 2611d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2612d71ae5a4SJacob Faibussowitsch { 2613ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2614ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2615ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2616ca3d3a14SMatthew G. Knepley 2617ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26189566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26229566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26239566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26249566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26259566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2626ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26279566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2628ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2629ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2630ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2632ca3d3a14SMatthew G. Knepley if (!dof) continue; 26339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26349566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2635ca3d3a14SMatthew G. Knepley } 2636ca3d3a14SMatthew G. Knepley } 26379566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26389566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26399566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2640ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2641ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2643ca3d3a14SMatthew G. Knepley if (dof) { 2644ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2645ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2646ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2647ca3d3a14SMatthew G. Knepley 2648ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26499566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26509566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2652ca3d3a14SMatthew G. Knepley } 2653ca3d3a14SMatthew G. Knepley } 2654ca3d3a14SMatthew G. Knepley } 26559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2657ca3d3a14SMatthew G. Knepley } 2658ca3d3a14SMatthew G. Knepley 2659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2660d71ae5a4SJacob Faibussowitsch { 2661ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2662ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2663ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2664ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2665ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2666ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2667ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26689566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670ca3d3a14SMatthew G. Knepley } 2671ca3d3a14SMatthew G. Knepley 2672bb9467b5SJed Brown /*@C 2673bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2674baf369e7SPeter Brune 267520f4b53cSBarry Smith Logically Collective 2676baf369e7SPeter Brune 26774165533cSJose E. Roman Input Parameters: 2678bb7acecfSBarry Smith + dm - the `DM` 2679bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2680bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 268120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2682baf369e7SPeter Brune 268320f4b53cSBarry Smith Calling sequence of `beginhook`: 2684a4e35b19SJacob Faibussowitsch + dm - global `DM` 2685baf369e7SPeter Brune . g - global vector 2686baf369e7SPeter Brune . mode - mode 2687baf369e7SPeter Brune . l - local vector 2688baf369e7SPeter Brune - ctx - optional user-defined function context 2689baf369e7SPeter Brune 269020f4b53cSBarry Smith Calling sequence of `endhook`: 2691a4e35b19SJacob Faibussowitsch + dm - global `DM` 2692a4e35b19SJacob Faibussowitsch . g - global vector 2693a4e35b19SJacob Faibussowitsch . mode - mode 2694a4e35b19SJacob Faibussowitsch . l - local vector 2695baf369e7SPeter Brune - ctx - optional user-defined function context 2696baf369e7SPeter Brune 2697baf369e7SPeter Brune Level: advanced 2698baf369e7SPeter Brune 2699bb7acecfSBarry Smith Note: 2700bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2701bb7acecfSBarry Smith 27021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2703baf369e7SPeter Brune @*/ 2704a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2705d71ae5a4SJacob Faibussowitsch { 2706baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2707baf369e7SPeter Brune 2708baf369e7SPeter Brune PetscFunctionBegin; 2709baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2710baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27119566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2712baf369e7SPeter Brune link->beginhook = beginhook; 2713baf369e7SPeter Brune link->endhook = endhook; 2714baf369e7SPeter Brune link->ctx = ctx; 27150298fd71SBarry Smith link->next = NULL; 2716baf369e7SPeter Brune *p = link; 27173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2718baf369e7SPeter Brune } 2719baf369e7SPeter Brune 2720d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2721d71ae5a4SJacob Faibussowitsch { 27224c274da1SToby Isaac Mat cMat; 272379769bd5SJed Brown Vec cVec, cBias; 27244c274da1SToby Isaac PetscSection section, cSec; 27254c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27264c274da1SToby Isaac 27274c274da1SToby Isaac PetscFunctionBegin; 2728a4e35b19SJacob Faibussowitsch (void)g; 2729a4e35b19SJacob Faibussowitsch (void)ctx; 27304c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27319566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27324c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27335db9a05bSToby Isaac PetscInt nRows; 27345db9a05bSToby Isaac 27359566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27363ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27379566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27389566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27399566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27409566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27424c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27444c274da1SToby Isaac if (dof) { 27454c274da1SToby Isaac PetscScalar *vals; 27469566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27479566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27484c274da1SToby Isaac } 27494c274da1SToby Isaac } 27509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27514c274da1SToby Isaac } 27523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27534c274da1SToby Isaac } 27544c274da1SToby Isaac 275547c6ae99SBarry Smith /*@ 275601729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 275701729b5cSPatrick Sanan 275820f4b53cSBarry Smith Neighbor-wise Collective 275901729b5cSPatrick Sanan 276001729b5cSPatrick Sanan Input Parameters: 2761bb7acecfSBarry Smith + dm - the `DM` object 276201729b5cSPatrick Sanan . g - the global vector 2763bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 276401729b5cSPatrick Sanan - l - the local vector 276501729b5cSPatrick Sanan 276620f4b53cSBarry Smith Level: beginner 276720f4b53cSBarry Smith 276801729b5cSPatrick Sanan Notes: 2769bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2770bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2771bb7acecfSBarry Smith 2772bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 277301729b5cSPatrick Sanan 27741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 277560225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2776bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 277701729b5cSPatrick Sanan @*/ 2778d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2779d71ae5a4SJacob Faibussowitsch { 278001729b5cSPatrick Sanan PetscFunctionBegin; 27819566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27829566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278401729b5cSPatrick Sanan } 278501729b5cSPatrick Sanan 278601729b5cSPatrick Sanan /*@ 278747c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 278847c6ae99SBarry Smith 278920f4b53cSBarry Smith Neighbor-wise Collective 279047c6ae99SBarry Smith 279147c6ae99SBarry Smith Input Parameters: 2792bb7acecfSBarry Smith + dm - the `DM` object 279347c6ae99SBarry Smith . g - the global vector 2794bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 279547c6ae99SBarry Smith - l - the local vector 279647c6ae99SBarry Smith 279701729b5cSPatrick Sanan Level: intermediate 279847c6ae99SBarry Smith 2799bb7acecfSBarry Smith Notes: 2800bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2801bb7acecfSBarry Smith 2802bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2803bb7acecfSBarry Smith 2804bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2805bb7acecfSBarry Smith 2806bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2807bb7acecfSBarry Smith 280860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 280947c6ae99SBarry Smith @*/ 2810d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2811d71ae5a4SJacob Faibussowitsch { 28127128ae9fSMatthew G Knepley PetscSF sf; 2813baf369e7SPeter Brune DMGlobalToLocalHookLink link; 281447c6ae99SBarry Smith 281547c6ae99SBarry Smith PetscFunctionBegin; 2816171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2817baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28181baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2819baf369e7SPeter Brune } 28209566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28217128ae9fSMatthew G Knepley if (sf) { 2822ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2823ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2824d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28257128ae9fSMatthew G Knepley 28267a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28279566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28289566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28299566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28327128ae9fSMatthew G Knepley } else { 2833fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28347128ae9fSMatthew G Knepley } 28353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283647c6ae99SBarry Smith } 283747c6ae99SBarry Smith 283847c6ae99SBarry Smith /*@ 283947c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 284047c6ae99SBarry Smith 284120f4b53cSBarry Smith Neighbor-wise Collective 284247c6ae99SBarry Smith 284347c6ae99SBarry Smith Input Parameters: 2844bb7acecfSBarry Smith + dm - the `DM` object 284547c6ae99SBarry Smith . g - the global vector 2846bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 284747c6ae99SBarry Smith - l - the local vector 284847c6ae99SBarry Smith 284901729b5cSPatrick Sanan Level: intermediate 285047c6ae99SBarry Smith 2851bb7acecfSBarry Smith Note: 2852bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2853bb7acecfSBarry Smith 285460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 285547c6ae99SBarry Smith @*/ 2856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2857d71ae5a4SJacob Faibussowitsch { 28587128ae9fSMatthew G Knepley PetscSF sf; 2859ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2860ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2861ca3d3a14SMatthew G. Knepley PetscBool transform; 2862baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2863d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 286447c6ae99SBarry Smith 286547c6ae99SBarry Smith PetscFunctionBegin; 2866171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28679566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28689566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28697128ae9fSMatthew G Knepley if (sf) { 28707a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28717128ae9fSMatthew G Knepley 28729566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28739566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28769566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28779566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28787128ae9fSMatthew G Knepley } else { 2879fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28807128ae9fSMatthew G Knepley } 28819566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2882baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28839566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2884baf369e7SPeter Brune } 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 288647c6ae99SBarry Smith } 288747c6ae99SBarry Smith 2888d4d07f1eSToby Isaac /*@C 2889d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2890d4d07f1eSToby Isaac 289120f4b53cSBarry Smith Logically Collective 2892d4d07f1eSToby Isaac 28934165533cSJose E. Roman Input Parameters: 2894bb7acecfSBarry Smith + dm - the `DM` 2895bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2896bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 289720f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2898d4d07f1eSToby Isaac 289920f4b53cSBarry Smith Calling sequence of `beginhook`: 2900a4e35b19SJacob Faibussowitsch + global - global `DM` 2901d4d07f1eSToby Isaac . l - local vector 2902d4d07f1eSToby Isaac . mode - mode 2903d4d07f1eSToby Isaac . g - global vector 2904d4d07f1eSToby Isaac - ctx - optional user-defined function context 2905d4d07f1eSToby Isaac 290620f4b53cSBarry Smith Calling sequence of `endhook`: 2907bb7acecfSBarry Smith + global - global `DM` 2908d4d07f1eSToby Isaac . l - local vector 2909d4d07f1eSToby Isaac . mode - mode 2910d4d07f1eSToby Isaac . g - global vector 2911d4d07f1eSToby Isaac - ctx - optional user-defined function context 2912d4d07f1eSToby Isaac 2913d4d07f1eSToby Isaac Level: advanced 2914d4d07f1eSToby Isaac 29151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2916d4d07f1eSToby Isaac @*/ 2917a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2918d71ae5a4SJacob Faibussowitsch { 2919d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2920d4d07f1eSToby Isaac 2921d4d07f1eSToby Isaac PetscFunctionBegin; 2922d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2923d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29249566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2925d4d07f1eSToby Isaac link->beginhook = beginhook; 2926d4d07f1eSToby Isaac link->endhook = endhook; 2927d4d07f1eSToby Isaac link->ctx = ctx; 2928d4d07f1eSToby Isaac link->next = NULL; 2929d4d07f1eSToby Isaac *p = link; 29303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2931d4d07f1eSToby Isaac } 2932d4d07f1eSToby Isaac 2933d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2934d71ae5a4SJacob Faibussowitsch { 29354c274da1SToby Isaac Mat cMat; 29364c274da1SToby Isaac Vec cVec; 29374c274da1SToby Isaac PetscSection section, cSec; 29384c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 29394c274da1SToby Isaac 29404c274da1SToby Isaac PetscFunctionBegin; 2941a4e35b19SJacob Faibussowitsch (void)g; 2942a4e35b19SJacob Faibussowitsch (void)ctx; 29434c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29449566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29454c274da1SToby Isaac if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) { 29465db9a05bSToby Isaac PetscInt nRows; 29475db9a05bSToby Isaac 29489566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29493ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29509566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29519566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29534c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29554c274da1SToby Isaac if (dof) { 29564c274da1SToby Isaac PetscInt d; 29574c274da1SToby Isaac PetscScalar *vals; 29589566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29599566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29604c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29614c274da1SToby Isaac * we just extracted */ 2962ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29634c274da1SToby Isaac } 29644c274da1SToby Isaac } 29659566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29674c274da1SToby Isaac } 29683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29694c274da1SToby Isaac } 297001729b5cSPatrick Sanan /*@ 297101729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 297201729b5cSPatrick Sanan 297320f4b53cSBarry Smith Neighbor-wise Collective 297401729b5cSPatrick Sanan 297501729b5cSPatrick Sanan Input Parameters: 2976bb7acecfSBarry Smith + dm - the `DM` object 297701729b5cSPatrick Sanan . l - the local vector 2978bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 297901729b5cSPatrick Sanan - g - the global vector 298001729b5cSPatrick Sanan 298120f4b53cSBarry Smith Level: beginner 298220f4b53cSBarry Smith 298301729b5cSPatrick Sanan Notes: 298401729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2985bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 298601729b5cSPatrick Sanan 2987bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2988bb7acecfSBarry Smith 2989bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 2990bb7acecfSBarry Smith 2991bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 299201729b5cSPatrick Sanan 29931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 299401729b5cSPatrick Sanan @*/ 2995d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 2996d71ae5a4SJacob Faibussowitsch { 299701729b5cSPatrick Sanan PetscFunctionBegin; 29989566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 29999566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 300101729b5cSPatrick Sanan } 30024c274da1SToby Isaac 300347c6ae99SBarry Smith /*@ 300401729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30059a42bb27SBarry Smith 300620f4b53cSBarry Smith Neighbor-wise Collective 30079a42bb27SBarry Smith 30089a42bb27SBarry Smith Input Parameters: 3009bb7acecfSBarry Smith + dm - the `DM` object 3010f6813fd5SJed Brown . l - the local vector 3011aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30121eb28f2eSBarry Smith - g - the global vector 30139a42bb27SBarry Smith 301420f4b53cSBarry Smith Level: intermediate 301520f4b53cSBarry Smith 301695452b02SPatrick Sanan Notes: 3017bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3018bb7acecfSBarry Smith 3019bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3020bb7acecfSBarry Smith 3021bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3022bb7acecfSBarry Smith 3023bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3024bb7acecfSBarry Smith 3025bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30269a42bb27SBarry Smith 30271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30289a42bb27SBarry Smith @*/ 3029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3030d71ae5a4SJacob Faibussowitsch { 30317128ae9fSMatthew G Knepley PetscSF sf; 303284330215SMatthew G. Knepley PetscSection s, gs; 3033d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3034ca3d3a14SMatthew G. Knepley Vec tmpl; 3035ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3036ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3037fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3038d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30399a42bb27SBarry Smith 30409a42bb27SBarry Smith PetscFunctionBegin; 3041171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3042d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30431baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3044d4d07f1eSToby Isaac } 30459566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30469566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30479566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30487128ae9fSMatthew G Knepley switch (mode) { 30497128ae9fSMatthew G Knepley case INSERT_VALUES: 30507128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3051d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3052d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3053d71ae5a4SJacob Faibussowitsch break; 30547128ae9fSMatthew G Knepley case ADD_VALUES: 30557128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3056d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3057d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3058d71ae5a4SJacob Faibussowitsch break; 3059d71ae5a4SJacob Faibussowitsch default: 3060d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30617128ae9fSMatthew G Knepley } 3062ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30639566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3064ca3d3a14SMatthew G. Knepley if (transform) { 30659566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30669566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30679566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30689566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3069fa88e482SJed Brown } else if (isInsert) { 30709566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3071fa88e482SJed Brown } else { 30729566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3073fa88e482SJed Brown l_inplace = PETSC_TRUE; 3074ca3d3a14SMatthew G. Knepley } 3075fa88e482SJed Brown if (s && isInsert) { 30769566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3077fa88e482SJed Brown } else { 30789566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3079fa88e482SJed Brown g_inplace = PETSC_TRUE; 3080fa88e482SJed Brown } 3081ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30829566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 308384330215SMatthew G. Knepley } else if (s && isInsert) { 308484330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 308584330215SMatthew G. Knepley 30869566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 30889566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 308984330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3090b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 309184330215SMatthew G. Knepley 30929566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 30939566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 30949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 30959566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 30969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 30979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3098b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 309903442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31007a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3101b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3102b3b16f48SMatthew G. Knepley if (!gcdof) { 310384330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3104b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3105b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 310684330215SMatthew G. Knepley const PetscInt *cdofs; 310784330215SMatthew G. Knepley PetscInt cind = 0; 310884330215SMatthew G. Knepley 31099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3110b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31119371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31129371c9d4SSatish Balay ++cind; 31139371c9d4SSatish Balay continue; 31149371c9d4SSatish Balay } 3115b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 311684330215SMatthew G. Knepley } 31177a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 311884330215SMatthew G. Knepley } 3119ca3d3a14SMatthew G. Knepley } 3120fa88e482SJed Brown if (g_inplace) { 31219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3122fa88e482SJed Brown } else { 31239566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3124fa88e482SJed Brown } 3125ca3d3a14SMatthew G. Knepley if (transform) { 31269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31279566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3128fa88e482SJed Brown } else if (l_inplace) { 31299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3130ca3d3a14SMatthew G. Knepley } else { 31319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3132ca3d3a14SMatthew G. Knepley } 31337128ae9fSMatthew G Knepley } else { 3134fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31357128ae9fSMatthew G Knepley } 31363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31379a42bb27SBarry Smith } 31389a42bb27SBarry Smith 31399a42bb27SBarry Smith /*@ 31409a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 314147c6ae99SBarry Smith 314220f4b53cSBarry Smith Neighbor-wise Collective 314347c6ae99SBarry Smith 314447c6ae99SBarry Smith Input Parameters: 3145bb7acecfSBarry Smith + dm - the `DM` object 3146f6813fd5SJed Brown . l - the local vector 3147bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3148f6813fd5SJed Brown - g - the global vector 314947c6ae99SBarry Smith 315001729b5cSPatrick Sanan Level: intermediate 315147c6ae99SBarry Smith 3152bb7acecfSBarry Smith Note: 3153bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3154bb7acecfSBarry Smith 315560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 315647c6ae99SBarry Smith @*/ 3157d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3158d71ae5a4SJacob Faibussowitsch { 31597128ae9fSMatthew G Knepley PetscSF sf; 316084330215SMatthew G. Knepley PetscSection s; 3161d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3162ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 316347c6ae99SBarry Smith 316447c6ae99SBarry Smith PetscFunctionBegin; 3165171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31669566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31679566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31687128ae9fSMatthew G Knepley switch (mode) { 31697128ae9fSMatthew G Knepley case INSERT_VALUES: 3170d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3171d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3172d71ae5a4SJacob Faibussowitsch break; 31737128ae9fSMatthew G Knepley case ADD_VALUES: 3174d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3175d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3176d71ae5a4SJacob Faibussowitsch break; 3177d71ae5a4SJacob Faibussowitsch default: 3178d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31797128ae9fSMatthew G Knepley } 318084330215SMatthew G. Knepley if (sf && !isInsert) { 3181ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3182ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3183ca3d3a14SMatthew G. Knepley Vec tmpl; 318484330215SMatthew G. Knepley 31859566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3186ca3d3a14SMatthew G. Knepley if (transform) { 31879566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3189ca3d3a14SMatthew G. Knepley } else { 31909566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3191ca3d3a14SMatthew G. Knepley } 31929566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 31939566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3194ca3d3a14SMatthew G. Knepley if (transform) { 31959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31969566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3197ca3d3a14SMatthew G. Knepley } else { 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3199ca3d3a14SMatthew G. Knepley } 32009566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 320184330215SMatthew G. Knepley } else if (s && isInsert) { 32027128ae9fSMatthew G Knepley } else { 3203fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32047128ae9fSMatthew G Knepley } 3205d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32069566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3207d4d07f1eSToby Isaac } 32083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 320947c6ae99SBarry Smith } 321047c6ae99SBarry Smith 3211f089877aSRichard Tran Mills /*@ 3212a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3213a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3214a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3215f089877aSRichard Tran Mills 321620f4b53cSBarry Smith Neighbor-wise Collective 3217f089877aSRichard Tran Mills 3218f089877aSRichard Tran Mills Input Parameters: 3219bb7acecfSBarry Smith + dm - the `DM` object 3220bc0a1609SRichard Tran Mills . g - the original local vector 3221bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3222f089877aSRichard Tran Mills 3223bc0a1609SRichard Tran Mills Output Parameter: 3224bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3225f089877aSRichard Tran Mills 3226f089877aSRichard Tran Mills Level: intermediate 3227f089877aSRichard Tran Mills 3228a4e35b19SJacob Faibussowitsch Notes: 3229a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3230a4e35b19SJacob Faibussowitsch 323160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3232f089877aSRichard Tran Mills @*/ 3233d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3234d71ae5a4SJacob Faibussowitsch { 3235f089877aSRichard Tran Mills PetscFunctionBegin; 3236f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32379f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32389f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32399f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3241f089877aSRichard Tran Mills } 3242f089877aSRichard Tran Mills 3243f089877aSRichard Tran Mills /*@ 3244bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3245bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3246f089877aSRichard Tran Mills 324720f4b53cSBarry Smith Neighbor-wise Collective 3248f089877aSRichard Tran Mills 3249f089877aSRichard Tran Mills Input Parameters: 325060225df5SJacob Faibussowitsch + dm - the `DM` object 3251bc0a1609SRichard Tran Mills . g - the original local vector 3252bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3253f089877aSRichard Tran Mills 3254bc0a1609SRichard Tran Mills Output Parameter: 3255bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3256f089877aSRichard Tran Mills 3257f089877aSRichard Tran Mills Level: intermediate 3258f089877aSRichard Tran Mills 325960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3260f089877aSRichard Tran Mills @*/ 3261d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3262d71ae5a4SJacob Faibussowitsch { 3263f089877aSRichard Tran Mills PetscFunctionBegin; 3264f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32659f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32669f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32679f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3269f089877aSRichard Tran Mills } 3270f089877aSRichard Tran Mills 327147c6ae99SBarry Smith /*@ 3272bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 327347c6ae99SBarry Smith 327420f4b53cSBarry Smith Collective 327547c6ae99SBarry Smith 3276d8d19677SJose E. Roman Input Parameters: 3277bb7acecfSBarry Smith + dm - the `DM` object 327820f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 327947c6ae99SBarry Smith 328047c6ae99SBarry Smith Output Parameter: 3281bb7acecfSBarry Smith . dmc - the coarsened `DM` 328247c6ae99SBarry Smith 328347c6ae99SBarry Smith Level: developer 328447c6ae99SBarry Smith 32851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 328647c6ae99SBarry Smith @*/ 3287d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3288d71ae5a4SJacob Faibussowitsch { 3289b17ce1afSJed Brown DMCoarsenHookLink link; 329047c6ae99SBarry Smith 329147c6ae99SBarry Smith PetscFunctionBegin; 3292171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3294dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3295b9d85ea2SLisandro Dalcin if (*dmc) { 3296a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 32979566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 329843842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 32999566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3300644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33010598a293SJed Brown (*dmc)->levelup = dm->levelup; 3302656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33039566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3304b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33059566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3306b17ce1afSJed Brown } 3307b9d85ea2SLisandro Dalcin } 33089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33097a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3311b17ce1afSJed Brown } 3312b17ce1afSJed Brown 3313bb9467b5SJed Brown /*@C 3314b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3315b17ce1afSJed Brown 331620f4b53cSBarry Smith Logically Collective; No Fortran Support 3317b17ce1afSJed Brown 33184165533cSJose E. Roman Input Parameters: 3319bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3320b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3321bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 332220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3323b17ce1afSJed Brown 332420f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3325bb7acecfSBarry Smith + fine - fine level `DM` 3326bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3327b17ce1afSJed Brown - ctx - optional user-defined function context 3328b17ce1afSJed Brown 332920f4b53cSBarry Smith Calling sequence of `restricthook`: 3330bb7acecfSBarry Smith + fine - fine level `DM` 3331bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3332c833c3b5SJed Brown . rscale - scaling vector for restriction 3333c833c3b5SJed Brown . inject - matrix restricting by injection 3334b17ce1afSJed Brown . coarse - coarse level DM to update 3335b17ce1afSJed Brown - ctx - optional user-defined function context 3336b17ce1afSJed Brown 3337b17ce1afSJed Brown Level: advanced 3338b17ce1afSJed Brown 3339b17ce1afSJed Brown Notes: 3340bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3341b17ce1afSJed Brown 3342b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3343b17ce1afSJed Brown 3344b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3345bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3346b17ce1afSJed Brown 3347bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3348bb7acecfSBarry Smith 33491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3350b17ce1afSJed Brown @*/ 3351a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3352d71ae5a4SJacob Faibussowitsch { 3353b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3354b17ce1afSJed Brown 3355b17ce1afSJed Brown PetscFunctionBegin; 3356b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33571e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33583ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33591e3d8eccSJed Brown } 33609566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3361b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3362b17ce1afSJed Brown link->restricthook = restricthook; 3363b17ce1afSJed Brown link->ctx = ctx; 33640298fd71SBarry Smith link->next = NULL; 3365b17ce1afSJed Brown *p = link; 33663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3367b17ce1afSJed Brown } 3368b17ce1afSJed Brown 3369dc822a44SJed Brown /*@C 3370bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3371dc822a44SJed Brown 337220f4b53cSBarry Smith Logically Collective; No Fortran Support 3373dc822a44SJed Brown 33744165533cSJose E. Roman Input Parameters: 3375bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3376dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3377bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 337820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3379dc822a44SJed Brown 3380dc822a44SJed Brown Level: advanced 3381dc822a44SJed Brown 3382bb7acecfSBarry Smith Note: 3383dc822a44SJed Brown This function does nothing if the hook is not in the list. 3384dc822a44SJed Brown 33851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3386dc822a44SJed Brown @*/ 3387d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3388d71ae5a4SJacob Faibussowitsch { 3389dc822a44SJed Brown DMCoarsenHookLink link, *p; 3390dc822a44SJed Brown 3391dc822a44SJed Brown PetscFunctionBegin; 3392dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3393dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3394dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3395dc822a44SJed Brown link = *p; 3396dc822a44SJed Brown *p = link->next; 33979566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3398dc822a44SJed Brown break; 3399dc822a44SJed Brown } 3400dc822a44SJed Brown } 34013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3402dc822a44SJed Brown } 3403dc822a44SJed Brown 3404b17ce1afSJed Brown /*@ 3405bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3406b17ce1afSJed Brown 3407b17ce1afSJed Brown Collective if any hooks are 3408b17ce1afSJed Brown 34094165533cSJose E. Roman Input Parameters: 3410bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3411bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3412e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3413bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 341420f4b53cSBarry Smith - coarse - coarser `DM` to update 3415b17ce1afSJed Brown 3416b17ce1afSJed Brown Level: developer 3417b17ce1afSJed Brown 341860225df5SJacob Faibussowitsch Developer Notes: 3419bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3420bb7acecfSBarry Smith 34211cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3422b17ce1afSJed Brown @*/ 3423d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3424d71ae5a4SJacob Faibussowitsch { 3425b17ce1afSJed Brown DMCoarsenHookLink link; 3426b17ce1afSJed Brown 3427b17ce1afSJed Brown PetscFunctionBegin; 3428b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34291baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3430b17ce1afSJed Brown } 34313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343247c6ae99SBarry Smith } 343347c6ae99SBarry Smith 3434bb9467b5SJed Brown /*@C 3435be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 34365dbd56e3SPeter Brune 343720f4b53cSBarry Smith Logically Collective; No Fortran Support 34385dbd56e3SPeter Brune 34394165533cSJose E. Roman Input Parameters: 3440bb7acecfSBarry Smith + global - global `DM` 3441bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34425dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 344320f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34445dbd56e3SPeter Brune 344520f4b53cSBarry Smith Calling sequence of `ddhook`: 3446bb7acecfSBarry Smith + global - global `DM` 3447bb7acecfSBarry Smith . block - block `DM` 3448ec4806b8SPeter Brune - ctx - optional user-defined function context 3449ec4806b8SPeter Brune 345020f4b53cSBarry Smith Calling sequence of `restricthook`: 3451bb7acecfSBarry Smith + global - global `DM` 34525dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 34535dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3454bb7acecfSBarry Smith . block - block `DM` 34555dbd56e3SPeter Brune - ctx - optional user-defined function context 34565dbd56e3SPeter Brune 34575dbd56e3SPeter Brune Level: advanced 34585dbd56e3SPeter Brune 34595dbd56e3SPeter Brune Notes: 3460bb7acecfSBarry Smith This function is only needed if auxiliary data needs to be set up on subdomain `DM`s. 34615dbd56e3SPeter Brune 34625dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34635dbd56e3SPeter Brune 34645dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3465bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34665dbd56e3SPeter Brune 34671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 34685dbd56e3SPeter Brune @*/ 3469a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3470d71ae5a4SJacob Faibussowitsch { 3471be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34725dbd56e3SPeter Brune 34735dbd56e3SPeter Brune PetscFunctionBegin; 34745dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3475b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34763ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3477b3a6b972SJed Brown } 34789566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 34795dbd56e3SPeter Brune link->restricthook = restricthook; 3480be081cd6SPeter Brune link->ddhook = ddhook; 34815dbd56e3SPeter Brune link->ctx = ctx; 34820298fd71SBarry Smith link->next = NULL; 34835dbd56e3SPeter Brune *p = link; 34843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34855dbd56e3SPeter Brune } 34865dbd56e3SPeter Brune 3487b3a6b972SJed Brown /*@C 3488b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3489b3a6b972SJed Brown 349020f4b53cSBarry Smith Logically Collective; No Fortran Support 3491b3a6b972SJed Brown 34924165533cSJose E. Roman Input Parameters: 3493bb7acecfSBarry Smith + global - global `DM` 3494bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3495b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 349620f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3497b3a6b972SJed Brown 3498b3a6b972SJed Brown Level: advanced 3499b3a6b972SJed Brown 35001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3501b3a6b972SJed Brown @*/ 3502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3503d71ae5a4SJacob Faibussowitsch { 3504b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3505b3a6b972SJed Brown 3506b3a6b972SJed Brown PetscFunctionBegin; 3507b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3508b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3509b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3510b3a6b972SJed Brown link = *p; 3511b3a6b972SJed Brown *p = link->next; 35129566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3513b3a6b972SJed Brown break; 3514b3a6b972SJed Brown } 3515b3a6b972SJed Brown } 35163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3517b3a6b972SJed Brown } 3518b3a6b972SJed Brown 35195dbd56e3SPeter Brune /*@ 3520bb7acecfSBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a block `DM` by running hooks registered by `DMSubDomainHookAdd()` 35215dbd56e3SPeter Brune 35225dbd56e3SPeter Brune Collective if any hooks are 35235dbd56e3SPeter Brune 35244165533cSJose E. Roman Input Parameters: 3525a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3526a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3527a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3528a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35295dbd56e3SPeter Brune 35305dbd56e3SPeter Brune Level: developer 35315dbd56e3SPeter Brune 35321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()` 35335dbd56e3SPeter Brune @*/ 3534d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3535d71ae5a4SJacob Faibussowitsch { 3536be081cd6SPeter Brune DMSubDomainHookLink link; 35375dbd56e3SPeter Brune 35385dbd56e3SPeter Brune PetscFunctionBegin; 3539be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35401baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35415dbd56e3SPeter Brune } 35423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35435dbd56e3SPeter Brune } 35445dbd56e3SPeter Brune 35455fe1f584SPeter Brune /*@ 3546bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35475fe1f584SPeter Brune 35485fe1f584SPeter Brune Not Collective 35495fe1f584SPeter Brune 35505fe1f584SPeter Brune Input Parameter: 3551bb7acecfSBarry Smith . dm - the `DM` object 35525fe1f584SPeter Brune 35535fe1f584SPeter Brune Output Parameter: 35546a7d9d85SPeter Brune . level - number of coarsenings 35555fe1f584SPeter Brune 35565fe1f584SPeter Brune Level: developer 35575fe1f584SPeter Brune 35581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35595fe1f584SPeter Brune @*/ 3560d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3561d71ae5a4SJacob Faibussowitsch { 35625fe1f584SPeter Brune PetscFunctionBegin; 35635fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35644f572ea9SToby Isaac PetscAssertPointer(level, 2); 35655fe1f584SPeter Brune *level = dm->leveldown; 35663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35675fe1f584SPeter Brune } 35685fe1f584SPeter Brune 35699a64c4a8SMatthew G. Knepley /*@ 3570bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35719a64c4a8SMatthew G. Knepley 357220f4b53cSBarry Smith Collective 35739a64c4a8SMatthew G. Knepley 35749a64c4a8SMatthew G. Knepley Input Parameters: 3575bb7acecfSBarry Smith + dm - the `DM` object 35769a64c4a8SMatthew G. Knepley - level - number of coarsenings 35779a64c4a8SMatthew G. Knepley 35789a64c4a8SMatthew G. Knepley Level: developer 35799a64c4a8SMatthew G. Knepley 3580bb7acecfSBarry Smith Note: 3581bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3582bb7acecfSBarry Smith 358342747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35849a64c4a8SMatthew G. Knepley @*/ 3585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3586d71ae5a4SJacob Faibussowitsch { 35879a64c4a8SMatthew G. Knepley PetscFunctionBegin; 35889a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35899a64c4a8SMatthew G. Knepley dm->leveldown = level; 35903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35919a64c4a8SMatthew G. Knepley } 35929a64c4a8SMatthew G. Knepley 359347c6ae99SBarry Smith /*@C 3594bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 359547c6ae99SBarry Smith 359620f4b53cSBarry Smith Collective 359747c6ae99SBarry Smith 3598d8d19677SJose E. Roman Input Parameters: 3599bb7acecfSBarry Smith + dm - the `DM` object 360047c6ae99SBarry Smith - nlevels - the number of levels of refinement 360147c6ae99SBarry Smith 360247c6ae99SBarry Smith Output Parameter: 3603bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 360447c6ae99SBarry Smith 360547c6ae99SBarry Smith Level: developer 360647c6ae99SBarry Smith 36071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 360847c6ae99SBarry Smith @*/ 3609d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3610d71ae5a4SJacob Faibussowitsch { 361147c6ae99SBarry Smith PetscFunctionBegin; 3612171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36137a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36143ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36154f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3616213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 361747c6ae99SBarry Smith PetscInt i; 361847c6ae99SBarry Smith 36199566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 362048a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3621213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 362347c6ae99SBarry Smith } 362447c6ae99SBarry Smith 362547c6ae99SBarry Smith /*@C 3626bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 362747c6ae99SBarry Smith 362820f4b53cSBarry Smith Collective 362947c6ae99SBarry Smith 3630d8d19677SJose E. Roman Input Parameters: 3631bb7acecfSBarry Smith + dm - the `DM` object 363247c6ae99SBarry Smith - nlevels - the number of levels of coarsening 363347c6ae99SBarry Smith 363447c6ae99SBarry Smith Output Parameter: 3635bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 363647c6ae99SBarry Smith 363747c6ae99SBarry Smith Level: developer 363847c6ae99SBarry Smith 36391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 364047c6ae99SBarry Smith @*/ 3641d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3642d71ae5a4SJacob Faibussowitsch { 364347c6ae99SBarry Smith PetscFunctionBegin; 3644171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36457a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36463ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36474f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3648213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 364947c6ae99SBarry Smith PetscInt i; 365047c6ae99SBarry Smith 36519566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 365248a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3653213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 365547c6ae99SBarry Smith } 365647c6ae99SBarry Smith 36571a266240SBarry Smith /*@C 3658bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36591a266240SBarry Smith 3660bb7acecfSBarry Smith Logically Collective if the function is collective 36611a266240SBarry Smith 36621a266240SBarry Smith Input Parameters: 3663bb7acecfSBarry Smith + dm - the `DM` object 36641a266240SBarry Smith - destroy - the destroy function 36651a266240SBarry Smith 36661a266240SBarry Smith Level: intermediate 36671a266240SBarry Smith 36681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3669f07f9ceaSJed Brown @*/ 3670d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3671d71ae5a4SJacob Faibussowitsch { 36721a266240SBarry Smith PetscFunctionBegin; 3673171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36741a266240SBarry Smith dm->ctxdestroy = destroy; 36753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36761a266240SBarry Smith } 36771a266240SBarry Smith 3678b07ff414SBarry Smith /*@ 3679bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 368047c6ae99SBarry Smith 368147c6ae99SBarry Smith Not Collective 368247c6ae99SBarry Smith 368347c6ae99SBarry Smith Input Parameters: 3684bb7acecfSBarry Smith + dm - the `DM` object 368547c6ae99SBarry Smith - ctx - the user context 368647c6ae99SBarry Smith 368747c6ae99SBarry Smith Level: intermediate 368847c6ae99SBarry Smith 3689bb7acecfSBarry Smith Note: 369035cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3691bb7acecfSBarry Smith 369260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 369347c6ae99SBarry Smith @*/ 3694d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3695d71ae5a4SJacob Faibussowitsch { 369647c6ae99SBarry Smith PetscFunctionBegin; 3697171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 369847c6ae99SBarry Smith dm->ctx = ctx; 36993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 370047c6ae99SBarry Smith } 370147c6ae99SBarry Smith 370247c6ae99SBarry Smith /*@ 3703bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 370447c6ae99SBarry Smith 370547c6ae99SBarry Smith Not Collective 370647c6ae99SBarry Smith 370747c6ae99SBarry Smith Input Parameter: 3708bb7acecfSBarry Smith . dm - the `DM` object 370947c6ae99SBarry Smith 371047c6ae99SBarry Smith Output Parameter: 371147c6ae99SBarry Smith . ctx - the user context 371247c6ae99SBarry Smith 371347c6ae99SBarry Smith Level: intermediate 371447c6ae99SBarry Smith 3715bb7acecfSBarry Smith Note: 371635cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3717bb7acecfSBarry Smith 371842747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 371947c6ae99SBarry Smith @*/ 3720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3721d71ae5a4SJacob Faibussowitsch { 372247c6ae99SBarry Smith PetscFunctionBegin; 3723171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37241b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 372647c6ae99SBarry Smith } 372747c6ae99SBarry Smith 372808da532bSDmitry Karpeev /*@C 3729bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 373008da532bSDmitry Karpeev 373120f4b53cSBarry Smith Logically Collective 373208da532bSDmitry Karpeev 3733d8d19677SJose E. Roman Input Parameters: 373408da532bSDmitry Karpeev + dm - the DM object 373520f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 373608da532bSDmitry Karpeev 373708da532bSDmitry Karpeev Level: intermediate 373808da532bSDmitry Karpeev 37391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3740db781477SPatrick Sanan `DMSetJacobian()` 374108da532bSDmitry Karpeev @*/ 3742d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3743d71ae5a4SJacob Faibussowitsch { 374408da532bSDmitry Karpeev PetscFunctionBegin; 37455a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 374608da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 374808da532bSDmitry Karpeev } 374908da532bSDmitry Karpeev 375008da532bSDmitry Karpeev /*@ 3751bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 375208da532bSDmitry Karpeev 375308da532bSDmitry Karpeev Not Collective 375408da532bSDmitry Karpeev 375508da532bSDmitry Karpeev Input Parameter: 3756bb7acecfSBarry Smith . dm - the `DM` object to destroy 375708da532bSDmitry Karpeev 375808da532bSDmitry Karpeev Output Parameter: 3759bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 376008da532bSDmitry Karpeev 376108da532bSDmitry Karpeev Level: developer 376208da532bSDmitry Karpeev 37631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 376408da532bSDmitry Karpeev @*/ 3765d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3766d71ae5a4SJacob Faibussowitsch { 376708da532bSDmitry Karpeev PetscFunctionBegin; 37685a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37694f572ea9SToby Isaac PetscAssertPointer(flg, 2); 377008da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 37713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 377208da532bSDmitry Karpeev } 377308da532bSDmitry Karpeev 377408da532bSDmitry Karpeev /*@C 3775bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 377608da532bSDmitry Karpeev 377720f4b53cSBarry Smith Logically Collective 377808da532bSDmitry Karpeev 3779f899ff85SJose E. Roman Input Parameter: 3780bb7acecfSBarry Smith . dm - the `DM` object 378108da532bSDmitry Karpeev 378260225df5SJacob Faibussowitsch Output Parameters: 378308da532bSDmitry Karpeev + xl - lower bound 378408da532bSDmitry Karpeev - xu - upper bound 378508da532bSDmitry Karpeev 3786907376e6SBarry Smith Level: advanced 3787907376e6SBarry Smith 378820f4b53cSBarry Smith Note: 378995452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 379008da532bSDmitry Karpeev 37911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 379208da532bSDmitry Karpeev @*/ 3793d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3794d71ae5a4SJacob Faibussowitsch { 379508da532bSDmitry Karpeev PetscFunctionBegin; 37965a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 379708da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 37985a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3799dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 380108da532bSDmitry Karpeev } 380208da532bSDmitry Karpeev 3803b0ae01b7SPeter Brune /*@ 3804bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3805b0ae01b7SPeter Brune 3806b0ae01b7SPeter Brune Not Collective 3807b0ae01b7SPeter Brune 3808b0ae01b7SPeter Brune Input Parameter: 3809b0ae01b7SPeter Brune . dm - the DM object 3810b0ae01b7SPeter Brune 3811b0ae01b7SPeter Brune Output Parameter: 3812bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3813b0ae01b7SPeter Brune 3814b0ae01b7SPeter Brune Level: developer 3815b0ae01b7SPeter Brune 38161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3817b0ae01b7SPeter Brune @*/ 3818d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3819d71ae5a4SJacob Faibussowitsch { 3820b0ae01b7SPeter Brune PetscFunctionBegin; 38215a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38224f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3823b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3825b0ae01b7SPeter Brune } 3826b0ae01b7SPeter Brune 38273ad4599aSBarry Smith /*@ 3828bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38293ad4599aSBarry Smith 38303ad4599aSBarry Smith Not Collective 38313ad4599aSBarry Smith 38323ad4599aSBarry Smith Input Parameter: 3833bb7acecfSBarry Smith . dm - the `DM` object 38343ad4599aSBarry Smith 38353ad4599aSBarry Smith Output Parameter: 3836bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38373ad4599aSBarry Smith 38383ad4599aSBarry Smith Level: developer 38393ad4599aSBarry Smith 38401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38413ad4599aSBarry Smith @*/ 3842d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3843d71ae5a4SJacob Faibussowitsch { 38443ad4599aSBarry Smith PetscFunctionBegin; 38455a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38464f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38473ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38493ad4599aSBarry Smith } 38503ad4599aSBarry Smith 3851a7058e45SLawrence Mitchell /*@ 3852bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3853a7058e45SLawrence Mitchell 3854a7058e45SLawrence Mitchell Not Collective 3855a7058e45SLawrence Mitchell 3856a7058e45SLawrence Mitchell Input Parameter: 3857bb7acecfSBarry Smith . dm - the `DM` object 3858a7058e45SLawrence Mitchell 3859a7058e45SLawrence Mitchell Output Parameter: 3860bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3861a7058e45SLawrence Mitchell 3862a7058e45SLawrence Mitchell Level: developer 3863a7058e45SLawrence Mitchell 38641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3865a7058e45SLawrence Mitchell @*/ 3866d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3867d71ae5a4SJacob Faibussowitsch { 3868a7058e45SLawrence Mitchell PetscFunctionBegin; 38695a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38704f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3871dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3872ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 38733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3874a7058e45SLawrence Mitchell } 3875a7058e45SLawrence Mitchell 38760298fd71SBarry Smith PetscFunctionList DMList = NULL; 3877264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3878264ace61SBarry Smith 3879264ace61SBarry Smith /*@C 3880bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3881264ace61SBarry Smith 388220f4b53cSBarry Smith Collective 3883264ace61SBarry Smith 3884264ace61SBarry Smith Input Parameters: 3885bb7acecfSBarry Smith + dm - The `DM` object 3886bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3887264ace61SBarry Smith 3888264ace61SBarry Smith Options Database Key: 3889bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3890264ace61SBarry Smith 3891264ace61SBarry Smith Level: intermediate 3892264ace61SBarry Smith 3893bb7acecfSBarry Smith Note: 38940462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3895bb7acecfSBarry Smith 38961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3897264ace61SBarry Smith @*/ 3898d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3899d71ae5a4SJacob Faibussowitsch { 3900264ace61SBarry Smith PetscErrorCode (*r)(DM); 3901264ace61SBarry Smith PetscBool match; 3902264ace61SBarry Smith 3903264ace61SBarry Smith PetscFunctionBegin; 3904264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39063ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3907264ace61SBarry Smith 39089566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39099566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39107a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3911264ace61SBarry Smith 3912dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39139566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39149566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39159566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3917264ace61SBarry Smith } 3918264ace61SBarry Smith 3919264ace61SBarry Smith /*@C 3920bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3921264ace61SBarry Smith 3922264ace61SBarry Smith Not Collective 3923264ace61SBarry Smith 3924264ace61SBarry Smith Input Parameter: 3925bb7acecfSBarry Smith . dm - The `DM` 3926264ace61SBarry Smith 3927264ace61SBarry Smith Output Parameter: 3928bb7acecfSBarry Smith . type - The `DMType` name 3929264ace61SBarry Smith 3930264ace61SBarry Smith Level: intermediate 3931264ace61SBarry Smith 39321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3933264ace61SBarry Smith @*/ 3934d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3935d71ae5a4SJacob Faibussowitsch { 3936264ace61SBarry Smith PetscFunctionBegin; 3937264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39384f572ea9SToby Isaac PetscAssertPointer(type, 2); 39399566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3940264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3942264ace61SBarry Smith } 3943264ace61SBarry Smith 394467a56275SMatthew G Knepley /*@C 3945bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 394667a56275SMatthew G Knepley 394720f4b53cSBarry Smith Collective 394867a56275SMatthew G Knepley 394967a56275SMatthew G Knepley Input Parameters: 3950bb7acecfSBarry Smith + dm - the `DM` 3951bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 395267a56275SMatthew G Knepley 395367a56275SMatthew G Knepley Output Parameter: 3954bb7acecfSBarry Smith . M - pointer to new `DM` 395567a56275SMatthew G Knepley 395620f4b53cSBarry Smith Level: intermediate 395720f4b53cSBarry Smith 395867a56275SMatthew G Knepley Notes: 3959bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3960bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3961bb7acecfSBarry Smith of the input `DM`. 396267a56275SMatthew G Knepley 39631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 396467a56275SMatthew G Knepley @*/ 3965d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3966d71ae5a4SJacob Faibussowitsch { 396767a56275SMatthew G Knepley DM B; 396867a56275SMatthew G Knepley char convname[256]; 3969c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 397067a56275SMatthew G Knepley 397167a56275SMatthew G Knepley PetscFunctionBegin; 397267a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 397367a56275SMatthew G Knepley PetscValidType(dm, 1); 39744f572ea9SToby Isaac PetscAssertPointer(M, 3); 39759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 39769566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3977c067b6caSMatthew G. Knepley if (sametype) { 3978c067b6caSMatthew G. Knepley *M = dm; 39799566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 39803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3981c067b6caSMatthew G. Knepley } else { 39820298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 398367a56275SMatthew G Knepley 398467a56275SMatthew G Knepley /* 398567a56275SMatthew G Knepley Order of precedence: 398667a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 398767a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 398867a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 398967a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 399067a56275SMatthew G Knepley 5) Use a really basic converter. 399167a56275SMatthew G Knepley */ 399267a56275SMatthew G Knepley 399367a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 39949566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 39959566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 39969566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 39979566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 39989566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 39999566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 400067a56275SMatthew G Knepley if (conv) goto foundconv; 400167a56275SMatthew G Knepley 400267a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40039566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40049566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40059566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40069566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40079566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40089566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40099566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40109566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 401167a56275SMatthew G Knepley if (conv) { 40129566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 401367a56275SMatthew G Knepley goto foundconv; 401467a56275SMatthew G Knepley } 401567a56275SMatthew G Knepley 401667a56275SMatthew G Knepley #if 0 401767a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 401867a56275SMatthew G Knepley conv = B->ops->convertfrom; 40199566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 402067a56275SMatthew G Knepley if (conv) goto foundconv; 402167a56275SMatthew G Knepley 402267a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 402367a56275SMatthew G Knepley if (dm->ops->convert) { 402467a56275SMatthew G Knepley conv = dm->ops->convert; 402567a56275SMatthew G Knepley } 402667a56275SMatthew G Knepley if (conv) goto foundconv; 402767a56275SMatthew G Knepley #endif 402867a56275SMatthew G Knepley 402967a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 403098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 403167a56275SMatthew G Knepley 403267a56275SMatthew G Knepley foundconv: 40339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40349566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 403512fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 403690b157c4SStefano Zampini { 40374fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40386858538eSMatthew G. Knepley 40394fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40404fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4041c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40429566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40439566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40449566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40459566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 404612fa691eSMatthew G. Knepley } 40479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 404867a56275SMatthew G Knepley } 40499566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405167a56275SMatthew G Knepley } 4052264ace61SBarry Smith 4053264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4054264ace61SBarry Smith 4055264ace61SBarry Smith /*@C 4056bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40571c84c290SBarry Smith 40581c84c290SBarry Smith Not Collective 40591c84c290SBarry Smith 40601c84c290SBarry Smith Input Parameters: 406120f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 406220f4b53cSBarry Smith - function - The creation routine itself 406320f4b53cSBarry Smith 406420f4b53cSBarry Smith Level: advanced 40651c84c290SBarry Smith 40661c84c290SBarry Smith Notes: 406720f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40681c84c290SBarry Smith 406960225df5SJacob Faibussowitsch Example Usage: 40701c84c290SBarry Smith .vb 4071bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40721c84c290SBarry Smith .ve 40731c84c290SBarry Smith 407420f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 40751c84c290SBarry Smith .vb 40761c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 40771c84c290SBarry Smith DMSetType(DM,"my_da"); 40781c84c290SBarry Smith .ve 40791c84c290SBarry Smith or at runtime via the option 40801c84c290SBarry Smith .vb 40811c84c290SBarry Smith -da_type my_da 40821c84c290SBarry Smith .ve 4083264ace61SBarry Smith 40841cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4085264ace61SBarry Smith @*/ 4086d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4087d71ae5a4SJacob Faibussowitsch { 4088264ace61SBarry Smith PetscFunctionBegin; 40899566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 40909566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 40913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4092264ace61SBarry Smith } 4093264ace61SBarry Smith 4094b859378eSBarry Smith /*@C 4095bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4096b859378eSBarry Smith 409720f4b53cSBarry Smith Collective 4098b859378eSBarry Smith 4099b859378eSBarry Smith Input Parameters: 4100bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4101bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4102bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4103bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4104b859378eSBarry Smith 4105b859378eSBarry Smith Level: intermediate 4106b859378eSBarry Smith 4107b859378eSBarry Smith Notes: 410855849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4109b859378eSBarry Smith 4110bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4111bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4112bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4113cd7e8a5eSksagiyam 41141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4115b859378eSBarry Smith @*/ 4116d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4117d71ae5a4SJacob Faibussowitsch { 41189331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4119b859378eSBarry Smith 4120b859378eSBarry Smith PetscFunctionBegin; 4121b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4122b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41239566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41259566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41279331c7a4SMatthew G. Knepley if (isbinary) { 41289331c7a4SMatthew G. Knepley PetscInt classid; 41299331c7a4SMatthew G. Knepley char type[256]; 4130b859378eSBarry Smith 41319566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41327a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41339566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41349566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4135dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41369331c7a4SMatthew G. Knepley } else if (ishdf5) { 4137dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41389331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4141b859378eSBarry Smith } 4142b859378eSBarry Smith 41437da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41447da65231SMatthew G Knepley 41452ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41462ecf6ec3SMatthew G. Knepley { 41472ecf6ec3SMatthew G. Knepley PetscInt f; 41482ecf6ec3SMatthew G. Knepley 41492ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41502ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41512ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41522ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41532ecf6ec3SMatthew G. Knepley } 41542ecf6ec3SMatthew G. Knepley 4155d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4156d71ae5a4SJacob Faibussowitsch { 41571d47ebbbSSatish Balay PetscInt f; 41581b30c384SMatthew G Knepley 41597da65231SMatthew G Knepley PetscFunctionBegin; 416063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 416148a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41637da65231SMatthew G Knepley } 41647da65231SMatthew G Knepley 41655962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 41665962854dSMatthew G. Knepley { 41675962854dSMatthew G. Knepley PetscInt f; 41685962854dSMatthew G. Knepley 41695962854dSMatthew G. Knepley PetscFunctionBegin; 41705962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41715962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 41725962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41735962854dSMatthew G. Knepley } 41745962854dSMatthew G. Knepley 4175d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4176d71ae5a4SJacob Faibussowitsch { 41771b30c384SMatthew G Knepley PetscInt f, g; 41787da65231SMatthew G Knepley 41797da65231SMatthew G Knepley PetscFunctionBegin; 418063a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41811d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 41829566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 418348a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 41849566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 41857da65231SMatthew G Knepley } 41863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41877da65231SMatthew G Knepley } 4188e7c4fc90SDmitry Karpeev 4189d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4190d71ae5a4SJacob Faibussowitsch { 41910c5b8624SToby Isaac PetscInt localSize, bs; 41920c5b8624SToby Isaac PetscMPIInt size; 41930c5b8624SToby Isaac Vec x, xglob; 41940c5b8624SToby Isaac const PetscScalar *xarray; 4195e759306cSMatthew G. Knepley 4196e759306cSMatthew G. Knepley PetscFunctionBegin; 41979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 41989566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 41999566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 420093ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42019566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42020c5b8624SToby Isaac if (size > 1) { 42039566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42059566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42069566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42070c5b8624SToby Isaac } else { 42080c5b8624SToby Isaac xglob = x; 42090c5b8624SToby Isaac } 42109566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42110c5b8624SToby Isaac if (size > 1) { 42129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42139566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42140c5b8624SToby Isaac } 42159566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4217e759306cSMatthew G. Knepley } 4218e759306cSMatthew G. Knepley 421988ed4aceSMatthew G Knepley /*@ 4220bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4221061576a5SJed Brown 4222061576a5SJed Brown Input Parameter: 4223bb7acecfSBarry Smith . dm - The `DM` 4224061576a5SJed Brown 4225061576a5SJed Brown Output Parameter: 4226bb7acecfSBarry Smith . section - The `PetscSection` 4227061576a5SJed Brown 422820f4b53cSBarry Smith Options Database Key: 4229bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4230061576a5SJed Brown 4231061576a5SJed Brown Level: advanced 4232061576a5SJed Brown 4233061576a5SJed Brown Notes: 4234bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4235061576a5SJed Brown 4236bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4237061576a5SJed Brown 42381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4239061576a5SJed Brown @*/ 4240d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4241d71ae5a4SJacob Faibussowitsch { 4242061576a5SJed Brown PetscFunctionBegin; 42439566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4245061576a5SJed Brown } 4246061576a5SJed Brown 4247061576a5SJed Brown /*@ 4248bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 424988ed4aceSMatthew G Knepley 425088ed4aceSMatthew G Knepley Input Parameter: 4251bb7acecfSBarry Smith . dm - The `DM` 425288ed4aceSMatthew G Knepley 425388ed4aceSMatthew G Knepley Output Parameter: 4254bb7acecfSBarry Smith . section - The `PetscSection` 425588ed4aceSMatthew G Knepley 425620f4b53cSBarry Smith Options Database Key: 4257bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4258e5893cccSMatthew G. Knepley 425988ed4aceSMatthew G Knepley Level: intermediate 426088ed4aceSMatthew G Knepley 4261bb7acecfSBarry Smith Note: 4262bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 426388ed4aceSMatthew G Knepley 42641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 426588ed4aceSMatthew G Knepley @*/ 4266d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4267d71ae5a4SJacob Faibussowitsch { 426888ed4aceSMatthew G Knepley PetscFunctionBegin; 426988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42704f572ea9SToby Isaac PetscAssertPointer(section, 2); 42711bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4272e5e52638SMatthew G. Knepley PetscInt d; 4273e5e52638SMatthew G. Knepley 427445480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 427545480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 427645480ffeSMatthew G. Knepley PetscViewer viewer; 427745480ffeSMatthew G. Knepley PetscViewerFormat format; 427845480ffeSMatthew G. Knepley PetscBool flg; 427945480ffeSMatthew G. Knepley 42809566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 42819566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 428245480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 42839566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 42849566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 428545480ffeSMatthew G. Knepley } 428645480ffeSMatthew G. Knepley if (flg) { 42879566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 42889566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4289cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 429045480ffeSMatthew G. Knepley } 429145480ffeSMatthew G. Knepley } 4292dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 42939566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 42942f0f8703SMatthew G. Knepley } 42951bb6d2a8SBarry Smith *section = dm->localSection; 42963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 429788ed4aceSMatthew G Knepley } 429888ed4aceSMatthew G Knepley 429988ed4aceSMatthew G Knepley /*@ 4300bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4301061576a5SJed Brown 4302061576a5SJed Brown Input Parameters: 4303bb7acecfSBarry Smith + dm - The `DM` 4304bb7acecfSBarry Smith - section - The `PetscSection` 4305061576a5SJed Brown 4306061576a5SJed Brown Level: advanced 4307061576a5SJed Brown 4308061576a5SJed Brown Notes: 4309bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4310061576a5SJed Brown 4311bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4312061576a5SJed Brown 43131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4314061576a5SJed Brown @*/ 4315d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4316d71ae5a4SJacob Faibussowitsch { 4317061576a5SJed Brown PetscFunctionBegin; 43189566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4320061576a5SJed Brown } 4321061576a5SJed Brown 4322061576a5SJed Brown /*@ 4323bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 432488ed4aceSMatthew G Knepley 432588ed4aceSMatthew G Knepley Input Parameters: 4326bb7acecfSBarry Smith + dm - The `DM` 4327bb7acecfSBarry Smith - section - The `PetscSection` 432888ed4aceSMatthew G Knepley 432988ed4aceSMatthew G Knepley Level: intermediate 433088ed4aceSMatthew G Knepley 4331bb7acecfSBarry Smith Note: 4332bb7acecfSBarry Smith Any existing Section will be destroyed 433388ed4aceSMatthew G Knepley 43341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 433588ed4aceSMatthew G Knepley @*/ 4336d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4337d71ae5a4SJacob Faibussowitsch { 4338c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4339af122d2aSMatthew G Knepley PetscInt f; 434088ed4aceSMatthew G Knepley 434188ed4aceSMatthew G Knepley PetscFunctionBegin; 434288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4343b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43459566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43461bb6d2a8SBarry Smith dm->localSection = section; 43479566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4348af122d2aSMatthew G Knepley if (numFields) { 43499566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4350af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43510f21e855SMatthew G. Knepley PetscObject disc; 4352af122d2aSMatthew G Knepley const char *name; 4353af122d2aSMatthew G Knepley 43549566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43559566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43569566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4357af122d2aSMatthew G Knepley } 4358af122d2aSMatthew G Knepley } 435950350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 436050350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43619566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 436250350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 4363*52947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 436450350c8eSStefano Zampini 436550350c8eSStefano Zampini /* Clear scratch vectors */ 436650350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 436750350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 436850350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 436950350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 437188ed4aceSMatthew G Knepley } 437288ed4aceSMatthew G Knepley 4373adc21957SMatthew G. Knepley /*@C 4374adc21957SMatthew G. Knepley DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a blokc structure. 4375adc21957SMatthew G. Knepley 4376adc21957SMatthew G. Knepley Input Parameter: 4377adc21957SMatthew G. Knepley . dm - The `DM` 4378adc21957SMatthew G. Knepley 4379adc21957SMatthew G. Knepley Output Parameter: 4380adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4381adc21957SMatthew G. Knepley - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking 4382adc21957SMatthew G. Knepley 4383adc21957SMatthew G. Knepley Level: developer 4384adc21957SMatthew G. Knepley 4385adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4386adc21957SMatthew G. Knepley @*/ 4387adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4388adc21957SMatthew G. Knepley { 4389adc21957SMatthew G. Knepley PetscFunctionBegin; 4390adc21957SMatthew G. Knepley *perm = NULL; 4391adc21957SMatthew G. Knepley *blockStarts = NULL; 4392adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4393adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4394adc21957SMatthew G. Knepley } 4395adc21957SMatthew G. Knepley 43969435951eSToby Isaac /*@ 4397bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 43989435951eSToby Isaac 439920f4b53cSBarry Smith not Collective 4400e228b242SToby Isaac 44019435951eSToby Isaac Input Parameter: 4402bb7acecfSBarry Smith . dm - The `DM` 44039435951eSToby Isaac 4404d8d19677SJose E. Roman Output Parameters: 440520f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 440620f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 440779769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44089435951eSToby Isaac 44099435951eSToby Isaac Level: advanced 44109435951eSToby Isaac 4411bb7acecfSBarry Smith Note: 4412bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44139435951eSToby Isaac 44141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44159435951eSToby Isaac @*/ 4416d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4417d71ae5a4SJacob Faibussowitsch { 44189435951eSToby Isaac PetscFunctionBegin; 44199435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4420dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44213b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44223b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 442379769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44259435951eSToby Isaac } 44269435951eSToby Isaac 44279435951eSToby Isaac /*@ 4428bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44299435951eSToby Isaac 443020f4b53cSBarry Smith Collective 4431e228b242SToby Isaac 44329435951eSToby Isaac Input Parameters: 4433bb7acecfSBarry Smith + dm - The `DM` 4434bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 443520f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 443620f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44379435951eSToby Isaac 44389435951eSToby Isaac Level: advanced 44399435951eSToby Isaac 444020f4b53cSBarry Smith Notes: 444120f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 444220f4b53cSBarry Smith 444320f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 444420f4b53cSBarry Smith 4445bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44469435951eSToby Isaac 44471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44489435951eSToby Isaac @*/ 4449d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4450d71ae5a4SJacob Faibussowitsch { 4451e228b242SToby Isaac PetscMPIInt result; 44529435951eSToby Isaac 44539435951eSToby Isaac PetscFunctionBegin; 44549435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4455e228b242SToby Isaac if (section) { 4456e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44587a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4459e228b242SToby Isaac } 4460e228b242SToby Isaac if (mat) { 4461e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44637a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4464e228b242SToby Isaac } 446579769bd5SJed Brown if (bias) { 446679769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 446879769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 446979769bd5SJed Brown } 44709566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44719566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44723b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44753b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 447879769bd5SJed Brown dm->defaultConstraint.bias = bias; 44793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44809435951eSToby Isaac } 44819435951eSToby Isaac 4482497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4483507e4973SMatthew G. Knepley /* 4484bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4485507e4973SMatthew G. Knepley 4486507e4973SMatthew G. Knepley Input Parameters: 4487bb7acecfSBarry Smith + dm - The `DM` 4488bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4489bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4490507e4973SMatthew G. Knepley 4491507e4973SMatthew G. Knepley Level: intermediate 4492507e4973SMatthew G. Knepley 44931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4494507e4973SMatthew G. Knepley */ 4495d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4496d71ae5a4SJacob Faibussowitsch { 4497507e4973SMatthew G. Knepley MPI_Comm comm; 4498507e4973SMatthew G. Knepley PetscLayout layout; 4499507e4973SMatthew G. Knepley const PetscInt *ranges; 4500507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4501507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4502507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4503507e4973SMatthew G. Knepley 4504507e4973SMatthew G. Knepley PetscFunctionBegin; 45059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4506507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45119566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45159566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4516507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4517f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4518507e4973SMatthew G. Knepley 45199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45219566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45229566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4525507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45269371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45279371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45289371c9d4SSatish Balay valid = PETSC_FALSE; 45299371c9d4SSatish Balay } 45309371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45319371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45329371c9d4SSatish Balay valid = PETSC_FALSE; 45339371c9d4SSatish Balay } 4534507e4973SMatthew G. Knepley if (gdof < 0) { 4535507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4536507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4537507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4538507e4973SMatthew G. Knepley 45399566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4540507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45419371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45429371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45439371c9d4SSatish Balay valid = PETSC_FALSE; 45449371c9d4SSatish Balay break; 45459371c9d4SSatish Balay } 4546507e4973SMatthew G. Knepley } 4547507e4973SMatthew G. Knepley } 4548507e4973SMatthew G. Knepley } 45499566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45509566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4552507e4973SMatthew G. Knepley if (!gvalid) { 45539566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4554507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4555507e4973SMatthew G. Knepley } 45563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4557507e4973SMatthew G. Knepley } 4558f741bcd2SMatthew G. Knepley #endif 4559507e4973SMatthew G. Knepley 45605f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45616725e60dSJed Brown { 45626725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45634d86920dSPierre Jolivet 45646725e60dSJed Brown PetscFunctionBegin; 45656725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45664f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45675f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45686725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45696725e60dSJed Brown else *sf = dm->sf; 45703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45716725e60dSJed Brown } 45726725e60dSJed Brown 457388ed4aceSMatthew G Knepley /*@ 4574bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 457588ed4aceSMatthew G Knepley 457620f4b53cSBarry Smith Collective 45778b1ab98fSJed Brown 457888ed4aceSMatthew G Knepley Input Parameter: 4579bb7acecfSBarry Smith . dm - The `DM` 458088ed4aceSMatthew G Knepley 458188ed4aceSMatthew G Knepley Output Parameter: 4582bb7acecfSBarry Smith . section - The `PetscSection` 458388ed4aceSMatthew G Knepley 458488ed4aceSMatthew G Knepley Level: intermediate 458588ed4aceSMatthew G Knepley 4586bb7acecfSBarry Smith Note: 4587bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 458888ed4aceSMatthew G Knepley 45891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 459088ed4aceSMatthew G Knepley @*/ 4591d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4592d71ae5a4SJacob Faibussowitsch { 459388ed4aceSMatthew G Knepley PetscFunctionBegin; 459488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45954f572ea9SToby Isaac PetscAssertPointer(section, 2); 45961bb6d2a8SBarry Smith if (!dm->globalSection) { 4597fd59a867SMatthew G. Knepley PetscSection s; 45986725e60dSJed Brown PetscSF sf; 4599fd59a867SMatthew G. Knepley 46009566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46017a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46027a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46035f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4604eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46059566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46079566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 460888ed4aceSMatthew G Knepley } 46091bb6d2a8SBarry Smith *section = dm->globalSection; 46103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 461188ed4aceSMatthew G Knepley } 461288ed4aceSMatthew G Knepley 4613b21d0597SMatthew G Knepley /*@ 4614bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4615b21d0597SMatthew G Knepley 4616b21d0597SMatthew G Knepley Input Parameters: 4617bb7acecfSBarry Smith + dm - The `DM` 46182fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4619b21d0597SMatthew G Knepley 4620b21d0597SMatthew G Knepley Level: intermediate 4621b21d0597SMatthew G Knepley 4622bb7acecfSBarry Smith Note: 4623bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4624b21d0597SMatthew G Knepley 46251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4626b21d0597SMatthew G Knepley @*/ 4627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4628d71ae5a4SJacob Faibussowitsch { 4629b21d0597SMatthew G Knepley PetscFunctionBegin; 4630b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46315080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46329566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46339566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46341bb6d2a8SBarry Smith dm->globalSection = section; 4635497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46369566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4637507e4973SMatthew G. Knepley #endif 463850350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 463950350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 4640*52947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 464150350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 464250350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4644b21d0597SMatthew G Knepley } 4645b21d0597SMatthew G Knepley 464688ed4aceSMatthew G Knepley /*@ 4647bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4648bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 464988ed4aceSMatthew G Knepley 465088ed4aceSMatthew G Knepley Input Parameter: 4651bb7acecfSBarry Smith . dm - The `DM` 465288ed4aceSMatthew G Knepley 465388ed4aceSMatthew G Knepley Output Parameter: 4654bb7acecfSBarry Smith . sf - The `PetscSF` 465588ed4aceSMatthew G Knepley 465688ed4aceSMatthew G Knepley Level: intermediate 465788ed4aceSMatthew G Knepley 4658bb7acecfSBarry Smith Note: 4659bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 466088ed4aceSMatthew G Knepley 46611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 466288ed4aceSMatthew G Knepley @*/ 4663d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4664d71ae5a4SJacob Faibussowitsch { 466588ed4aceSMatthew G Knepley PetscInt nroots; 466688ed4aceSMatthew G Knepley 466788ed4aceSMatthew G Knepley PetscFunctionBegin; 466888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46694f572ea9SToby Isaac PetscAssertPointer(sf, 2); 467048a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46719566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 467288ed4aceSMatthew G Knepley if (nroots < 0) { 467388ed4aceSMatthew G Knepley PetscSection section, gSection; 467488ed4aceSMatthew G Knepley 46759566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 467631ea6d37SMatthew G Knepley if (section) { 46779566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46789566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 467931ea6d37SMatthew G Knepley } else { 46800298fd71SBarry Smith *sf = NULL; 46813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 468231ea6d37SMatthew G Knepley } 468388ed4aceSMatthew G Knepley } 46841bb6d2a8SBarry Smith *sf = dm->sectionSF; 46853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 468688ed4aceSMatthew G Knepley } 468788ed4aceSMatthew G Knepley 468888ed4aceSMatthew G Knepley /*@ 4689bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 469088ed4aceSMatthew G Knepley 469188ed4aceSMatthew G Knepley Input Parameters: 4692bb7acecfSBarry Smith + dm - The `DM` 4693bb7acecfSBarry Smith - sf - The `PetscSF` 469488ed4aceSMatthew G Knepley 469588ed4aceSMatthew G Knepley Level: intermediate 469688ed4aceSMatthew G Knepley 4697bb7acecfSBarry Smith Note: 4698bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 469988ed4aceSMatthew G Knepley 47001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 470188ed4aceSMatthew G Knepley @*/ 4702d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4703d71ae5a4SJacob Faibussowitsch { 470488ed4aceSMatthew G Knepley PetscFunctionBegin; 470588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4706b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47089566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47091bb6d2a8SBarry Smith dm->sectionSF = sf; 47103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471188ed4aceSMatthew G Knepley } 471288ed4aceSMatthew G Knepley 471388ed4aceSMatthew G Knepley /*@C 4714bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 471588ed4aceSMatthew G Knepley describing the data layout. 471688ed4aceSMatthew G Knepley 471788ed4aceSMatthew G Knepley Input Parameters: 4718bb7acecfSBarry Smith + dm - The `DM` 4719bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4720bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 472188ed4aceSMatthew G Knepley 47221bb6d2a8SBarry Smith Level: developer 47231bb6d2a8SBarry Smith 4724bb7acecfSBarry Smith Note: 4725bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4726bb7acecfSBarry Smith 472760225df5SJacob Faibussowitsch Developer Notes: 4728bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4729bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4730bb7acecfSBarry Smith input and should just obtain them from the `DM`? 47311bb6d2a8SBarry Smith 47321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 473388ed4aceSMatthew G Knepley @*/ 4734d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4735d71ae5a4SJacob Faibussowitsch { 473688ed4aceSMatthew G Knepley PetscFunctionBegin; 473788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 474088ed4aceSMatthew G Knepley } 4741af122d2aSMatthew G Knepley 4742b21d0597SMatthew G Knepley /*@ 4743bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4744bb7acecfSBarry Smith 4745bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4746b21d0597SMatthew G Knepley 4747b21d0597SMatthew G Knepley Input Parameter: 4748bb7acecfSBarry Smith . dm - The `DM` 4749b21d0597SMatthew G Knepley 4750b21d0597SMatthew G Knepley Output Parameter: 4751bb7acecfSBarry Smith . sf - The `PetscSF` 4752b21d0597SMatthew G Knepley 4753b21d0597SMatthew G Knepley Level: intermediate 4754b21d0597SMatthew G Knepley 4755bb7acecfSBarry Smith Note: 4756bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4757b21d0597SMatthew G Knepley 47581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4759b21d0597SMatthew G Knepley @*/ 4760d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4761d71ae5a4SJacob Faibussowitsch { 4762b21d0597SMatthew G Knepley PetscFunctionBegin; 4763b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47644f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4765b21d0597SMatthew G Knepley *sf = dm->sf; 47663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4767b21d0597SMatthew G Knepley } 4768b21d0597SMatthew G Knepley 4769057b4bcdSMatthew G Knepley /*@ 4770bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4771bb7acecfSBarry Smith 477220f4b53cSBarry Smith Collective 4773057b4bcdSMatthew G Knepley 4774057b4bcdSMatthew G Knepley Input Parameters: 4775bb7acecfSBarry Smith + dm - The `DM` 4776bb7acecfSBarry Smith - sf - The `PetscSF` 4777057b4bcdSMatthew G Knepley 4778057b4bcdSMatthew G Knepley Level: intermediate 4779057b4bcdSMatthew G Knepley 47801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4781057b4bcdSMatthew G Knepley @*/ 4782d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4783d71ae5a4SJacob Faibussowitsch { 4784057b4bcdSMatthew G Knepley PetscFunctionBegin; 4785057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4786b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47879566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47889566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4789057b4bcdSMatthew G Knepley dm->sf = sf; 47903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4791057b4bcdSMatthew G Knepley } 4792057b4bcdSMatthew G Knepley 47934f37162bSMatthew G. Knepley /*@ 4794bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 47954f37162bSMatthew G. Knepley 47964f37162bSMatthew G. Knepley Input Parameter: 4797bb7acecfSBarry Smith . dm - The `DM` 47984f37162bSMatthew G. Knepley 47994f37162bSMatthew G. Knepley Output Parameter: 4800bb7acecfSBarry Smith . sf - The `PetscSF` 48014f37162bSMatthew G. Knepley 48024f37162bSMatthew G. Knepley Level: intermediate 48034f37162bSMatthew G. Knepley 4804bb7acecfSBarry Smith Note: 4805bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48064f37162bSMatthew G. Knepley 48071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48084f37162bSMatthew G. Knepley @*/ 4809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4810d71ae5a4SJacob Faibussowitsch { 48114f37162bSMatthew G. Knepley PetscFunctionBegin; 48124f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48134f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48144f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48164f37162bSMatthew G. Knepley } 48174f37162bSMatthew G. Knepley 48184f37162bSMatthew G. Knepley /*@ 48194f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48204f37162bSMatthew G. Knepley 48214f37162bSMatthew G. Knepley Input Parameters: 48224f37162bSMatthew G. Knepley + dm - The DM 48234f37162bSMatthew G. Knepley - sf - The PetscSF 48244f37162bSMatthew G. Knepley 48254f37162bSMatthew G. Knepley Level: intermediate 48264f37162bSMatthew G. Knepley 48271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48284f37162bSMatthew G. Knepley @*/ 4829d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4830d71ae5a4SJacob Faibussowitsch { 48314f37162bSMatthew G. Knepley PetscFunctionBegin; 48324f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48334f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48364f37162bSMatthew G. Knepley dm->sfNatural = sf; 48373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48384f37162bSMatthew G. Knepley } 48394f37162bSMatthew G. Knepley 4840d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4841d71ae5a4SJacob Faibussowitsch { 484234aa8a36SMatthew G. Knepley PetscClassId id; 484334aa8a36SMatthew G. Knepley 484434aa8a36SMatthew G. Knepley PetscFunctionBegin; 48459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 484634aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48479566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 484834aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48499566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 485017c1d62eSMatthew G. Knepley } else { 48519566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 485234aa8a36SMatthew G. Knepley } 48533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 485434aa8a36SMatthew G. Knepley } 485534aa8a36SMatthew G. Knepley 4856d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4857d71ae5a4SJacob Faibussowitsch { 485844a7f3ddSMatthew G. Knepley RegionField *tmpr; 485944a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 486044a7f3ddSMatthew G. Knepley 486144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48623ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 486444a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48659371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48669371c9d4SSatish Balay tmpr[f].disc = NULL; 48679371c9d4SSatish Balay tmpr[f].label = NULL; 48689371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48699371c9d4SSatish Balay } 48709566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 487144a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 487244a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487444a7f3ddSMatthew G. Knepley } 487544a7f3ddSMatthew G. Knepley 487644a7f3ddSMatthew G. Knepley /*@ 487720f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 487844a7f3ddSMatthew G. Knepley 487920f4b53cSBarry Smith Logically Collective 488044a7f3ddSMatthew G. Knepley 488144a7f3ddSMatthew G. Knepley Input Parameter: 488220f4b53cSBarry Smith . dm - The `DM` 488344a7f3ddSMatthew G. Knepley 488444a7f3ddSMatthew G. Knepley Level: intermediate 488544a7f3ddSMatthew G. Knepley 48861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 488744a7f3ddSMatthew G. Knepley @*/ 4888d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4889d71ae5a4SJacob Faibussowitsch { 489044a7f3ddSMatthew G. Knepley PetscInt f; 489144a7f3ddSMatthew G. Knepley 489244a7f3ddSMatthew G. Knepley PetscFunctionBegin; 489344a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 489444a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 48959566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 48969566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 489744a7f3ddSMatthew G. Knepley } 48989566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 489944a7f3ddSMatthew G. Knepley dm->fields = NULL; 490044a7f3ddSMatthew G. Knepley dm->Nf = 0; 49013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 490244a7f3ddSMatthew G. Knepley } 490344a7f3ddSMatthew G. Knepley 4904689b5837SMatthew G. Knepley /*@ 490520f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4906689b5837SMatthew G. Knepley 490720f4b53cSBarry Smith Not Collective 4908689b5837SMatthew G. Knepley 4909689b5837SMatthew G. Knepley Input Parameter: 491020f4b53cSBarry Smith . dm - The `DM` 4911689b5837SMatthew G. Knepley 4912689b5837SMatthew G. Knepley Output Parameter: 491360225df5SJacob Faibussowitsch . numFields - The number of fields 4914689b5837SMatthew G. Knepley 4915689b5837SMatthew G. Knepley Level: intermediate 4916689b5837SMatthew G. Knepley 49171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4918689b5837SMatthew G. Knepley @*/ 4919d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4920d71ae5a4SJacob Faibussowitsch { 49210f21e855SMatthew G. Knepley PetscFunctionBegin; 49220f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49234f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 492444a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4926af122d2aSMatthew G Knepley } 4927af122d2aSMatthew G Knepley 4928689b5837SMatthew G. Knepley /*@ 492920f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4930689b5837SMatthew G. Knepley 493120f4b53cSBarry Smith Logically Collective 4932689b5837SMatthew G. Knepley 4933689b5837SMatthew G. Knepley Input Parameters: 493420f4b53cSBarry Smith + dm - The `DM` 493560225df5SJacob Faibussowitsch - numFields - The number of fields 4936689b5837SMatthew G. Knepley 4937689b5837SMatthew G. Knepley Level: intermediate 4938689b5837SMatthew G. Knepley 49391cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4940689b5837SMatthew G. Knepley @*/ 4941d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4942d71ae5a4SJacob Faibussowitsch { 49430f21e855SMatthew G. Knepley PetscInt Nf, f; 4944af122d2aSMatthew G Knepley 4945af122d2aSMatthew G Knepley PetscFunctionBegin; 4946af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49479566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49480f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49490f21e855SMatthew G. Knepley PetscContainer obj; 49500f21e855SMatthew G. Knepley 49519566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49529566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49539566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4954af122d2aSMatthew G Knepley } 49553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4956af122d2aSMatthew G Knepley } 4957af122d2aSMatthew G Knepley 4958c1929be8SMatthew G. Knepley /*@ 4959bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4960c1929be8SMatthew G. Knepley 496120f4b53cSBarry Smith Not Collective 4962c1929be8SMatthew G. Knepley 4963c1929be8SMatthew G. Knepley Input Parameters: 4964bb7acecfSBarry Smith + dm - The `DM` 4965c1929be8SMatthew G. Knepley - f - The field number 4966c1929be8SMatthew G. Knepley 496744a7f3ddSMatthew G. Knepley Output Parameters: 496820f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 496920f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4970c1929be8SMatthew G. Knepley 497144a7f3ddSMatthew G. Knepley Level: intermediate 4972c1929be8SMatthew G. Knepley 49731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4974c1929be8SMatthew G. Knepley @*/ 4975d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4976d71ae5a4SJacob Faibussowitsch { 4977af122d2aSMatthew G Knepley PetscFunctionBegin; 4978af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49794f572ea9SToby Isaac PetscAssertPointer(disc, 4); 49807a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 498144a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 4982bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 49833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4984decb47aaSMatthew G. Knepley } 4985decb47aaSMatthew G. Knepley 4986083401c6SMatthew G. Knepley /* Does not clear the DS */ 4987d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 4988d71ae5a4SJacob Faibussowitsch { 4989083401c6SMatthew G. Knepley PetscFunctionBegin; 49909566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 49919566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 49929566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4993083401c6SMatthew G. Knepley dm->fields[f].label = label; 4994bb7acecfSBarry Smith dm->fields[f].disc = disc; 49959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 4996bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 49973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4998083401c6SMatthew G. Knepley } 4999083401c6SMatthew G. Knepley 500046560f82SMatthew G. Knepley /*@C 5001bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5002bb7acecfSBarry Smith the field numbering. 5003c1929be8SMatthew G. Knepley 500420f4b53cSBarry Smith Logically Collective 5005c1929be8SMatthew G. Knepley 5006c1929be8SMatthew G. Knepley Input Parameters: 5007bb7acecfSBarry Smith + dm - The `DM` 5008c1929be8SMatthew G. Knepley . f - The field number 500920f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5010bb7acecfSBarry Smith - disc - The discretization object 5011c1929be8SMatthew G. Knepley 501244a7f3ddSMatthew G. Knepley Level: intermediate 5013c1929be8SMatthew G. Knepley 50141cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5015c1929be8SMatthew G. Knepley @*/ 5016d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5017d71ae5a4SJacob Faibussowitsch { 5018decb47aaSMatthew G. Knepley PetscFunctionBegin; 5019decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5020e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5021bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50227a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5023bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5024bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50259566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 502744a7f3ddSMatthew G. Knepley } 502844a7f3ddSMatthew G. Knepley 502946560f82SMatthew G. Knepley /*@C 5030bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5031bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 503244a7f3ddSMatthew G. Knepley 503320f4b53cSBarry Smith Logically Collective 503444a7f3ddSMatthew G. Knepley 503544a7f3ddSMatthew G. Knepley Input Parameters: 5036bb7acecfSBarry Smith + dm - The `DM` 503720f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5038bb7acecfSBarry Smith - disc - The discretization object 503944a7f3ddSMatthew G. Knepley 504044a7f3ddSMatthew G. Knepley Level: intermediate 504144a7f3ddSMatthew G. Knepley 5042bb7acecfSBarry Smith Notes: 5043bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5044bb7acecfSBarry Smith 5045da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5046bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5047bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5048bb7acecfSBarry Smith 50491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 505044a7f3ddSMatthew G. Knepley @*/ 5051d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5052d71ae5a4SJacob Faibussowitsch { 505344a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 505444a7f3ddSMatthew G. Knepley 505544a7f3ddSMatthew G. Knepley PetscFunctionBegin; 505644a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5057064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5058bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50599566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 506044a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5061bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5063bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5064bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50659566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5067af122d2aSMatthew G Knepley } 50686636e97aSMatthew G Knepley 5069e5e52638SMatthew G. Knepley /*@ 5070e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5071e0b68406SMatthew Knepley 507220f4b53cSBarry Smith Logically Collective 5073e0b68406SMatthew Knepley 5074e0b68406SMatthew Knepley Input Parameters: 5075bb7acecfSBarry Smith + dm - The `DM` 5076e0b68406SMatthew Knepley . f - The field index 5077bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5078e0b68406SMatthew Knepley 5079e0b68406SMatthew Knepley Level: intermediate 5080e0b68406SMatthew Knepley 50811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5082e0b68406SMatthew Knepley @*/ 5083d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5084d71ae5a4SJacob Faibussowitsch { 5085e0b68406SMatthew Knepley PetscFunctionBegin; 508663a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5087e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 50883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5089e0b68406SMatthew Knepley } 5090e0b68406SMatthew Knepley 5091e0b68406SMatthew Knepley /*@ 5092e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5093e0b68406SMatthew Knepley 509420f4b53cSBarry Smith Not Collective 5095e0b68406SMatthew Knepley 5096e0b68406SMatthew Knepley Input Parameters: 5097bb7acecfSBarry Smith + dm - The `DM` 5098e0b68406SMatthew Knepley - f - The field index 5099e0b68406SMatthew Knepley 5100e0b68406SMatthew Knepley Output Parameter: 5101e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5102e0b68406SMatthew Knepley 5103e0b68406SMatthew Knepley Level: intermediate 5104e0b68406SMatthew Knepley 510560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5106e0b68406SMatthew Knepley @*/ 5107d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5108d71ae5a4SJacob Faibussowitsch { 5109e0b68406SMatthew Knepley PetscFunctionBegin; 511063a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5111e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5113e0b68406SMatthew Knepley } 5114e0b68406SMatthew Knepley 5115e0b68406SMatthew Knepley /*@ 5116bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5117e5e52638SMatthew G. Knepley 511820f4b53cSBarry Smith Collective 5119e5e52638SMatthew G. Knepley 5120e5e52638SMatthew G. Knepley Input Parameter: 5121bb7acecfSBarry Smith . dm - The `DM` 5122e5e52638SMatthew G. Knepley 5123e5e52638SMatthew G. Knepley Output Parameter: 5124bb7acecfSBarry Smith . newdm - The `DM` 5125e5e52638SMatthew G. Knepley 5126e5e52638SMatthew G. Knepley Level: advanced 5127e5e52638SMatthew G. Knepley 51281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5129e5e52638SMatthew G. Knepley @*/ 5130d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5131d71ae5a4SJacob Faibussowitsch { 5132e5e52638SMatthew G. Knepley PetscInt Nf, f; 5133e5e52638SMatthew G. Knepley 5134e5e52638SMatthew G. Knepley PetscFunctionBegin; 51353ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51369566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51379566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5138e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5139e5e52638SMatthew G. Knepley DMLabel label; 5140e5e52638SMatthew G. Knepley PetscObject field; 514134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5142e5e52638SMatthew G. Knepley 51439566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51449566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51459566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51469566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 514734aa8a36SMatthew G. Knepley } 51483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 514934aa8a36SMatthew G. Knepley } 515034aa8a36SMatthew G. Knepley 515134aa8a36SMatthew G. Knepley /*@ 515234aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 515334aa8a36SMatthew G. Knepley 515420f4b53cSBarry Smith Not Collective 515534aa8a36SMatthew G. Knepley 515634aa8a36SMatthew G. Knepley Input Parameters: 515720f4b53cSBarry Smith + dm - The `DM` object 515820f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 515934aa8a36SMatthew G. Knepley 5160d8d19677SJose E. Roman Output Parameters: 516134aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 516234aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 516334aa8a36SMatthew G. Knepley 516434aa8a36SMatthew G. Knepley Level: developer 516534aa8a36SMatthew G. Knepley 516620f4b53cSBarry Smith Notes: 516720f4b53cSBarry Smith .vb 516820f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 516920f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 517020f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 517120f4b53cSBarry Smith .ve 517220f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 517320f4b53cSBarry Smith 51741cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 517534aa8a36SMatthew G. Knepley @*/ 5176d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5177d71ae5a4SJacob Faibussowitsch { 517834aa8a36SMatthew G. Knepley PetscFunctionBegin; 517934aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 51804f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 51814f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 518234aa8a36SMatthew G. Knepley if (f < 0) { 518334aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 518434aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 518534aa8a36SMatthew G. Knepley } else { 518634aa8a36SMatthew G. Knepley PetscInt Nf; 518734aa8a36SMatthew G. Knepley 51889566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51897a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 519034aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 519134aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 519234aa8a36SMatthew G. Knepley } 51933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 519434aa8a36SMatthew G. Knepley } 519534aa8a36SMatthew G. Knepley 519634aa8a36SMatthew G. Knepley /*@ 519734aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 519834aa8a36SMatthew G. Knepley 519920f4b53cSBarry Smith Not Collective 520034aa8a36SMatthew G. Knepley 520134aa8a36SMatthew G. Knepley Input Parameters: 520220f4b53cSBarry Smith + dm - The `DM` object 520334aa8a36SMatthew G. Knepley . f - The field number 520434aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 520534aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 520634aa8a36SMatthew G. Knepley 520734aa8a36SMatthew G. Knepley Level: developer 520834aa8a36SMatthew G. Knepley 520920f4b53cSBarry Smith Notes: 521020f4b53cSBarry Smith .vb 521120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 521220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 521320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 521420f4b53cSBarry Smith .ve 521520f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 521620f4b53cSBarry Smith 52171cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 521834aa8a36SMatthew G. Knepley @*/ 5219d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5220d71ae5a4SJacob Faibussowitsch { 522134aa8a36SMatthew G. Knepley PetscFunctionBegin; 522234aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 522334aa8a36SMatthew G. Knepley if (f < 0) { 522434aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 522534aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 522634aa8a36SMatthew G. Knepley } else { 522734aa8a36SMatthew G. Knepley PetscInt Nf; 522834aa8a36SMatthew G. Knepley 52299566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52307a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 523134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 523234aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5233e5e52638SMatthew G. Knepley } 52343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5235e5e52638SMatthew G. Knepley } 5236e5e52638SMatthew G. Knepley 5237b0441da4SMatthew G. Knepley /*@ 5238b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5239b0441da4SMatthew G. Knepley 5240b0441da4SMatthew G. Knepley Not collective 5241b0441da4SMatthew G. Knepley 5242f899ff85SJose E. Roman Input Parameter: 524320f4b53cSBarry Smith . dm - The `DM` object 5244b0441da4SMatthew G. Knepley 5245d8d19677SJose E. Roman Output Parameters: 5246b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5247b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5248b0441da4SMatthew G. Knepley 5249b0441da4SMatthew G. Knepley Level: developer 5250b0441da4SMatthew G. Knepley 525120f4b53cSBarry Smith Notes: 525220f4b53cSBarry Smith .vb 525320f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 525420f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 525520f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 525620f4b53cSBarry Smith .ve 525720f4b53cSBarry Smith 52581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5259b0441da4SMatthew G. Knepley @*/ 5260d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5261d71ae5a4SJacob Faibussowitsch { 5262b0441da4SMatthew G. Knepley PetscInt Nf; 5263b0441da4SMatthew G. Knepley 5264b0441da4SMatthew G. Knepley PetscFunctionBegin; 5265b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52664f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52674f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52689566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5269b0441da4SMatthew G. Knepley if (!Nf) { 52709566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5271b0441da4SMatthew G. Knepley } else { 52729566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5273b0441da4SMatthew G. Knepley } 52743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5275b0441da4SMatthew G. Knepley } 5276b0441da4SMatthew G. Knepley 5277b0441da4SMatthew G. Knepley /*@ 5278b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5279b0441da4SMatthew G. Knepley 528020f4b53cSBarry Smith Not Collective 5281b0441da4SMatthew G. Knepley 5282b0441da4SMatthew G. Knepley Input Parameters: 528320f4b53cSBarry Smith + dm - The `DM` object 5284b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5285b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5286b0441da4SMatthew G. Knepley 5287b0441da4SMatthew G. Knepley Level: developer 5288b0441da4SMatthew G. Knepley 528920f4b53cSBarry Smith Notes: 529020f4b53cSBarry Smith .vb 529120f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 529220f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 529320f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 529420f4b53cSBarry Smith .ve 529520f4b53cSBarry Smith 52961cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5297b0441da4SMatthew G. Knepley @*/ 5298d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5299d71ae5a4SJacob Faibussowitsch { 5300b0441da4SMatthew G. Knepley PetscInt Nf; 5301b0441da4SMatthew G. Knepley 5302b0441da4SMatthew G. Knepley PetscFunctionBegin; 5303b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53049566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5305b0441da4SMatthew G. Knepley if (!Nf) { 53069566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5307b0441da4SMatthew G. Knepley } else { 53089566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5309e5e52638SMatthew G. Knepley } 53103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5311e5e52638SMatthew G. Knepley } 5312e5e52638SMatthew G. Knepley 5313d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5314d71ae5a4SJacob Faibussowitsch { 5315799db056SMatthew G. Knepley DM plex; 5316799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5317799db056SMatthew G. Knepley const char **names; 5318799db056SMatthew G. Knepley char *sendNames, *recvNames; 5319799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5320799db056SMatthew G. Knepley size_t len; 5321799db056SMatthew G. Knepley MPI_Comm comm; 5322799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5323783e2ec8SMatthew G. Knepley 5324783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5325799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5326799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5327799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5328799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5329799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5330799db056SMatthew G. Knepley PetscDS dsBC; 5331799db056SMatthew G. Knepley PetscInt numBd; 5332799db056SMatthew G. Knepley 533307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5334799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5335799db056SMatthew G. Knepley maxLabels += numBd; 5336799db056SMatthew G. Knepley } 5337799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5338799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5339799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5340799db056SMatthew G. Knepley PetscDS dsBC; 5341799db056SMatthew G. Knepley PetscInt numBd, bd; 5342799db056SMatthew G. Knepley 534307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5344799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5345799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5346799db056SMatthew G. Knepley DMLabel label; 5347799db056SMatthew G. Knepley PetscInt field; 5348799db056SMatthew G. Knepley PetscObject obj; 5349799db056SMatthew G. Knepley PetscClassId id; 5350799db056SMatthew G. Knepley 5351799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53529566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5354799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53559371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53569371c9d4SSatish Balay if (labels[l] == label) break; 5357799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5358783e2ec8SMatthew G. Knepley } 5359799db056SMatthew G. Knepley } 5360799db056SMatthew G. Knepley /* Get label names */ 5361799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5362799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53639371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53649371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53659371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53669371c9d4SSatish Balay } 5367799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5368712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5369799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5370c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5371799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5372799db056SMatthew G. Knepley /* Put all names on all processes */ 5373799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5374799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5375799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5376799db056SMatthew G. Knepley gNl = displs[size]; 53779371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53789371c9d4SSatish Balay counts[p] *= gmaxLen; 53799371c9d4SSatish Balay displs[p] *= gmaxLen; 53809371c9d4SSatish Balay } 5381799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5382799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5383799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5384799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5385799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5386799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5387799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 53889371c9d4SSatish Balay for (m = 0; m < gl; ++m) 53899371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 53909566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5391799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 53929566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5393799db056SMatthew G. Knepley ++gl; 5394783e2ec8SMatthew G. Knepley } 5395799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 53963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5397783e2ec8SMatthew G. Knepley } 5398783e2ec8SMatthew G. Knepley 5399d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5400d71ae5a4SJacob Faibussowitsch { 5401e5e52638SMatthew G. Knepley DMSpace *tmpd; 5402e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5403e5e52638SMatthew G. Knepley 5404e5e52638SMatthew G. Knepley PetscFunctionBegin; 54053ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5407e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54089371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54099371c9d4SSatish Balay tmpd[s].ds = NULL; 54109371c9d4SSatish Balay tmpd[s].label = NULL; 54119371c9d4SSatish Balay tmpd[s].fields = NULL; 54129371c9d4SSatish Balay } 54139566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5414e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5415e5e52638SMatthew G. Knepley dm->probs = tmpd; 54163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5417e5e52638SMatthew G. Knepley } 5418e5e52638SMatthew G. Knepley 5419e5e52638SMatthew G. Knepley /*@ 542020f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5421e5e52638SMatthew G. Knepley 542220f4b53cSBarry Smith Not Collective 5423e5e52638SMatthew G. Knepley 5424e5e52638SMatthew G. Knepley Input Parameter: 542520f4b53cSBarry Smith . dm - The `DM` 5426e5e52638SMatthew G. Knepley 5427e5e52638SMatthew G. Knepley Output Parameter: 542820f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5429e5e52638SMatthew G. Knepley 5430e5e52638SMatthew G. Knepley Level: intermediate 5431e5e52638SMatthew G. Knepley 54321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5433e5e52638SMatthew G. Knepley @*/ 5434d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5435d71ae5a4SJacob Faibussowitsch { 5436e5e52638SMatthew G. Knepley PetscFunctionBegin; 5437e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54384f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5439e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5441e5e52638SMatthew G. Knepley } 5442e5e52638SMatthew G. Knepley 5443e5e52638SMatthew G. Knepley /*@ 544420f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5445e5e52638SMatthew G. Knepley 544620f4b53cSBarry Smith Logically Collective 5447e5e52638SMatthew G. Knepley 5448e5e52638SMatthew G. Knepley Input Parameter: 544920f4b53cSBarry Smith . dm - The `DM` 5450e5e52638SMatthew G. Knepley 5451e5e52638SMatthew G. Knepley Level: intermediate 5452e5e52638SMatthew G. Knepley 54531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5454e5e52638SMatthew G. Knepley @*/ 5455d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5456d71ae5a4SJacob Faibussowitsch { 5457e5e52638SMatthew G. Knepley PetscInt s; 5458e5e52638SMatthew G. Knepley 5459e5e52638SMatthew G. Knepley PetscFunctionBegin; 5460e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5461e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54629566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 546307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54649566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54659566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5466e5e52638SMatthew G. Knepley } 54679566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5468e5e52638SMatthew G. Knepley dm->probs = NULL; 5469e5e52638SMatthew G. Knepley dm->Nds = 0; 54703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5471e5e52638SMatthew G. Knepley } 5472e5e52638SMatthew G. Knepley 5473e5e52638SMatthew G. Knepley /*@ 547420f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5475e5e52638SMatthew G. Knepley 547620f4b53cSBarry Smith Not Collective 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley Input Parameter: 547920f4b53cSBarry Smith . dm - The `DM` 5480e5e52638SMatthew G. Knepley 5481e5e52638SMatthew G. Knepley Output Parameter: 548207218a29SMatthew G. Knepley . ds - The default `PetscDS` 5483e5e52638SMatthew G. Knepley 5484e5e52638SMatthew G. Knepley Level: intermediate 5485e5e52638SMatthew G. Knepley 54861cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5487e5e52638SMatthew G. Knepley @*/ 548807218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5489d71ae5a4SJacob Faibussowitsch { 5490e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5491e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54924f572ea9SToby Isaac PetscAssertPointer(ds, 2); 549307218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 549407218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 54953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5496e5e52638SMatthew G. Knepley } 5497e5e52638SMatthew G. Knepley 5498e5e52638SMatthew G. Knepley /*@ 549920f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5500e5e52638SMatthew G. Knepley 550120f4b53cSBarry Smith Not Collective 5502e5e52638SMatthew G. Knepley 5503e5e52638SMatthew G. Knepley Input Parameters: 550420f4b53cSBarry Smith + dm - The `DM` 550520f4b53cSBarry Smith - point - Cell for the `PetscDS` 5506e5e52638SMatthew G. Knepley 550707218a29SMatthew G. Knepley Output Parameters: 550807218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 550907218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5510e5e52638SMatthew G. Knepley 5511e5e52638SMatthew G. Knepley Level: developer 5512e5e52638SMatthew G. Knepley 55131cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5514e5e52638SMatthew G. Knepley @*/ 551507218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5516d71ae5a4SJacob Faibussowitsch { 551707218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5518e5e52638SMatthew G. Knepley PetscInt s; 5519e5e52638SMatthew G. Knepley 5520e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5521e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55224f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55234f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 552463a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 552507218a29SMatthew G. Knepley if (ds) *ds = NULL; 552607218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5527e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5528e5e52638SMatthew G. Knepley PetscInt val; 5529e5e52638SMatthew G. Knepley 55309371c9d4SSatish Balay if (!dm->probs[s].label) { 553107218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55329371c9d4SSatish Balay } else { 55339566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55349371c9d4SSatish Balay if (val >= 0) { 553507218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 553607218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55379371c9d4SSatish Balay break; 55389371c9d4SSatish Balay } 5539e5e52638SMatthew G. Knepley } 5540e5e52638SMatthew G. Knepley } 554107218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5543e5e52638SMatthew G. Knepley } 5544e5e52638SMatthew G. Knepley 5545e5e52638SMatthew G. Knepley /*@ 554620f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5547e5e52638SMatthew G. Knepley 554820f4b53cSBarry Smith Not Collective 5549e5e52638SMatthew G. Knepley 5550e5e52638SMatthew G. Knepley Input Parameters: 555120f4b53cSBarry Smith + dm - The `DM` 555220f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5553e5e52638SMatthew G. Knepley 5554b3cf3223SMatthew G. Knepley Output Parameters: 555520f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 555607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 555707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5558e5e52638SMatthew G. Knepley 5559e5e52638SMatthew G. Knepley Level: advanced 5560e5e52638SMatthew G. Knepley 556120f4b53cSBarry Smith Note: 556220f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 556320f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 556407218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 556520f4b53cSBarry Smith 55661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5567e5e52638SMatthew G. Knepley @*/ 556807218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5569d71ae5a4SJacob Faibussowitsch { 5570e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5571e5e52638SMatthew G. Knepley 5572e5e52638SMatthew G. Knepley PetscFunctionBegin; 5573e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5574e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55759371c9d4SSatish Balay if (fields) { 55764f572ea9SToby Isaac PetscAssertPointer(fields, 3); 55779371c9d4SSatish Balay *fields = NULL; 55789371c9d4SSatish Balay } 55799371c9d4SSatish Balay if (ds) { 55804f572ea9SToby Isaac PetscAssertPointer(ds, 4); 55819371c9d4SSatish Balay *ds = NULL; 55829371c9d4SSatish Balay } 558307218a29SMatthew G. Knepley if (dsIn) { 55844f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 558507218a29SMatthew G. Knepley *dsIn = NULL; 558607218a29SMatthew G. Knepley } 5587e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5588154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5589b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5590b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 559107218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55923ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5593b3cf3223SMatthew G. Knepley } 5594e5e52638SMatthew G. Knepley } 55953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5596e5e52638SMatthew G. Knepley } 5597e5e52638SMatthew G. Knepley 5598e5e52638SMatthew G. Knepley /*@ 5599bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5600083401c6SMatthew G. Knepley 560120f4b53cSBarry Smith Collective 5602083401c6SMatthew G. Knepley 5603083401c6SMatthew G. Knepley Input Parameters: 5604bb7acecfSBarry Smith + dm - The `DM` 560520f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 560607218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 560707218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 560807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5609083401c6SMatthew G. Knepley 561020f4b53cSBarry Smith Level: advanced 561120f4b53cSBarry Smith 5612bb7acecfSBarry Smith Note: 5613bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5614083401c6SMatthew G. Knepley the fields argument is ignored. 5615083401c6SMatthew G. Knepley 56161cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5617083401c6SMatthew G. Knepley @*/ 561807218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5619d71ae5a4SJacob Faibussowitsch { 5620083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5621083401c6SMatthew G. Knepley 5622083401c6SMatthew G. Knepley PetscFunctionBegin; 5623083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5624083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 562507218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5626064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 562707218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5628083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5629083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56309566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 563107218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5632083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 563307218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5635083401c6SMatthew G. Knepley } 5636083401c6SMatthew G. Knepley } 56379566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 564107218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5642083401c6SMatthew G. Knepley if (!label) { 5643083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5644083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5645083401c6SMatthew G. Knepley Nds = 0; 5646083401c6SMatthew G. Knepley } 5647083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5648083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5649083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 565007218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5652083401c6SMatthew G. Knepley } 5653083401c6SMatthew G. Knepley 5654083401c6SMatthew G. Knepley /*@ 565520f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5656e5e52638SMatthew G. Knepley 565720f4b53cSBarry Smith Not Collective 5658e5e52638SMatthew G. Knepley 5659e5e52638SMatthew G. Knepley Input Parameters: 566020f4b53cSBarry Smith + dm - The `DM` 5661e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5662e5e52638SMatthew G. Knepley 5663e5e52638SMatthew G. Knepley Output Parameters: 566420f4b53cSBarry Smith + label - The region label, or `NULL` 566520f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 566607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 566707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5668e5e52638SMatthew G. Knepley 5669e5e52638SMatthew G. Knepley Level: advanced 5670e5e52638SMatthew G. Knepley 56711cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5672e5e52638SMatthew G. Knepley @*/ 567307218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5674d71ae5a4SJacob Faibussowitsch { 5675e5e52638SMatthew G. Knepley PetscInt Nds; 5676e5e52638SMatthew G. Knepley 5677e5e52638SMatthew G. Knepley PetscFunctionBegin; 5678e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56799566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 568063a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5681e5e52638SMatthew G. Knepley if (label) { 56824f572ea9SToby Isaac PetscAssertPointer(label, 3); 5683e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5684e5e52638SMatthew G. Knepley } 5685b3cf3223SMatthew G. Knepley if (fields) { 56864f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5687b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5688b3cf3223SMatthew G. Knepley } 5689e5e52638SMatthew G. Knepley if (ds) { 56904f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5691e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5692e5e52638SMatthew G. Knepley } 569307218a29SMatthew G. Knepley if (dsIn) { 56944f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 569507218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 569607218a29SMatthew G. Knepley } 56973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5698e5e52638SMatthew G. Knepley } 5699e5e52638SMatthew G. Knepley 5700e5e52638SMatthew G. Knepley /*@ 570120f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5702e5e52638SMatthew G. Knepley 570320f4b53cSBarry Smith Not Collective 5704e5e52638SMatthew G. Knepley 5705e5e52638SMatthew G. Knepley Input Parameters: 570620f4b53cSBarry Smith + dm - The `DM` 5707083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 570820f4b53cSBarry Smith . label - The region label, or `NULL` 570907218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 571007218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 571107218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5712e5e52638SMatthew G. Knepley 5713e5e52638SMatthew G. Knepley Level: advanced 5714e5e52638SMatthew G. Knepley 57151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5716e5e52638SMatthew G. Knepley @*/ 571707218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5718d71ae5a4SJacob Faibussowitsch { 5719083401c6SMatthew G. Knepley PetscInt Nds; 5720e5e52638SMatthew G. Knepley 5721e5e52638SMatthew G. Knepley PetscFunctionBegin; 5722e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5723ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57249566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 572563a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57269566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57279566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5728083401c6SMatthew G. Knepley dm->probs[num].label = label; 5729083401c6SMatthew G. Knepley if (fields) { 5730083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57319566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5733083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5734e5e52638SMatthew G. Knepley } 5735083401c6SMatthew G. Knepley if (ds) { 5736083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57389566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5739083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5740083401c6SMatthew G. Knepley } 574107218a29SMatthew G. Knepley if (dsIn) { 574207218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 574307218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 574407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 574507218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 574607218a29SMatthew G. Knepley } 57473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5748e5e52638SMatthew G. Knepley } 5749e5e52638SMatthew G. Knepley 5750e5e52638SMatthew G. Knepley /*@ 575120f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57521d3af9e0SMatthew G. Knepley 575320f4b53cSBarry Smith Not Collective 57541d3af9e0SMatthew G. Knepley 57551d3af9e0SMatthew G. Knepley Input Parameters: 575620f4b53cSBarry Smith + dm - The `DM` 575720f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57581d3af9e0SMatthew G. Knepley 57591d3af9e0SMatthew G. Knepley Output Parameter: 57601d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57611d3af9e0SMatthew G. Knepley 57621d3af9e0SMatthew G. Knepley Level: advanced 57631d3af9e0SMatthew G. Knepley 57641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57651d3af9e0SMatthew G. Knepley @*/ 5766d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5767d71ae5a4SJacob Faibussowitsch { 57681d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57691d3af9e0SMatthew G. Knepley 57701d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57711d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57721d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 57734f572ea9SToby Isaac PetscAssertPointer(num, 3); 57749566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57759371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57769371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57771d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57781d3af9e0SMatthew G. Knepley else *num = n; 57793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57801d3af9e0SMatthew G. Knepley } 57811d3af9e0SMatthew G. Knepley 57822df84da0SMatthew G. Knepley /*@C 5783bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 57842df84da0SMatthew G. Knepley 578520f4b53cSBarry Smith Not Collective 57862df84da0SMatthew G. Knepley 5787f1a722f8SMatthew G. Knepley Input Parameters: 5788bb7acecfSBarry Smith + dm - The `DM` 57892df84da0SMatthew G. Knepley . Nc - The number of components for the field 579020f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5791bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 57922df84da0SMatthew G. Knepley 57932df84da0SMatthew G. Knepley Output Parameter: 5794bb7acecfSBarry Smith . fem - The `PetscFE` 57952df84da0SMatthew G. Knepley 579620f4b53cSBarry Smith Level: intermediate 579720f4b53cSBarry Smith 5798bb7acecfSBarry Smith Note: 5799bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58002df84da0SMatthew G. Knepley 58011cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58022df84da0SMatthew G. Knepley @*/ 5803d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5804d71ae5a4SJacob Faibussowitsch { 58052df84da0SMatthew G. Knepley DMPolytopeType ct; 58062df84da0SMatthew G. Knepley PetscInt dim, cStart; 58072df84da0SMatthew G. Knepley 58082df84da0SMatthew G. Knepley PetscFunctionBegin; 58092df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58102df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58114f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58122df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58134f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58149566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58159566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58169566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58179566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58192df84da0SMatthew G. Knepley } 58202df84da0SMatthew G. Knepley 58211d3af9e0SMatthew G. Knepley /*@ 5822bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5823e5e52638SMatthew G. Knepley 582420f4b53cSBarry Smith Collective 5825e5e52638SMatthew G. Knepley 5826e5e52638SMatthew G. Knepley Input Parameter: 5827bb7acecfSBarry Smith . dm - The `DM` 5828e5e52638SMatthew G. Knepley 582920f4b53cSBarry Smith Options Database Key: 5830bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 583145480ffeSMatthew G. Knepley 583220f4b53cSBarry Smith Level: intermediate 583320f4b53cSBarry Smith 58341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5835e5e52638SMatthew G. Knepley @*/ 5836d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5837d71ae5a4SJacob Faibussowitsch { 5838e5e52638SMatthew G. Knepley MPI_Comm comm; 5839083401c6SMatthew G. Knepley PetscDS dsDef; 5840083401c6SMatthew G. Knepley DMLabel *labelSet; 5841f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5842f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5843e5e52638SMatthew G. Knepley 5844e5e52638SMatthew G. Knepley PetscFunctionBegin; 5845e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58463ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58489566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5849083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5851083401c6SMatthew G. Knepley Nl = 0; 5852083401c6SMatthew G. Knepley Ndef = 0; 5853083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5854083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5855083401c6SMatthew G. Knepley PetscInt l; 5856083401c6SMatthew G. Knepley 5857f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5858f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5859f918ec44SMatthew G. Knepley { 5860f918ec44SMatthew G. Knepley PetscClassId id; 5861f918ec44SMatthew G. Knepley 58629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5863f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5864f918ec44SMatthew G. Knepley Ceed ceed; 5865f918ec44SMatthew G. Knepley 58669566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58679566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5868f918ec44SMatthew G. Knepley } 5869f918ec44SMatthew G. Knepley } 5870f918ec44SMatthew G. Knepley #endif 58719371c9d4SSatish Balay if (!label) { 58729371c9d4SSatish Balay ++Ndef; 58739371c9d4SSatish Balay continue; 58749371c9d4SSatish Balay } 58759371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58769371c9d4SSatish Balay if (label == labelSet[l]) break; 5877083401c6SMatthew G. Knepley if (l < Nl) continue; 5878083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5879083401c6SMatthew G. Knepley } 5880083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 588107218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5882083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5883b3cf3223SMatthew G. Knepley IS fields; 5884b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5885b3cf3223SMatthew G. Knepley 58869371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58879371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 58887a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 58899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 58909371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 58919371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 58929566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 58939566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 58949566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 58959566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 589688f0c812SMatthew G. Knepley 58979566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 589807218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 58999566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59012df9ee95SMatthew G. Knepley } 590207218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59039566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5904083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5905083401c6SMatthew G. Knepley if (Ndef && Nl) { 59060122748bSMatthew G. Knepley DM plex; 5907083401c6SMatthew G. Knepley DMLabel cellLabel; 5908083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5909083401c6SMatthew G. Knepley PetscInt *fields; 5910083401c6SMatthew G. Knepley const PetscInt *cells; 5911083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59120122748bSMatthew G. Knepley 59139566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59149566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59159566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59169566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59175fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5918083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5919083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5920083401c6SMatthew G. Knepley IS pointIS; 5921083401c6SMatthew G. Knepley 59229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59239566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59249566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59259566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5926083401c6SMatthew G. Knepley } 59279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5928083401c6SMatthew G. Knepley 59299566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59329566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59359566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5936083401c6SMatthew G. Knepley 59379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59389371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59399371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59409566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59429566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59439566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5944083401c6SMatthew G. Knepley 59459566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 594607218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59479566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59489566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59499566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59519566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5952083401c6SMatthew G. Knepley } 5953083401c6SMatthew G. Knepley /* Create label DSes 5954083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5955083401c6SMatthew G. Knepley */ 5956083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5957083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5958083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 595907218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5960083401c6SMatthew G. Knepley IS fields; 5961083401c6SMatthew G. Knepley PetscInt *fld, nf; 5962083401c6SMatthew G. Knepley 59639566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59649371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59659371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59679371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59689371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59699566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59709566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59719566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59729566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59739566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5974083401c6SMatthew G. Knepley { 5975083401c6SMatthew G. Knepley DMPolytopeType ct; 5976083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59775fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59780122748bSMatthew G. Knepley 59799566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5980665f567fSMatthew G. Knepley if (lStart >= 0) { 59819566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5982412e9a14SMatthew G. Knepley switch (ct) { 5983412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5984412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5985412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5986d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 5987d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 5988d71ae5a4SJacob Faibussowitsch break; 5989d71ae5a4SJacob Faibussowitsch default: 5990d71ae5a4SJacob Faibussowitsch break; 5991412e9a14SMatthew G. Knepley } 5992665f567fSMatthew G. Knepley } 5993712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 599407218a29SMatthew G. Knepley if (isCohesive) { 599507218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 599607218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 599707218a29SMatthew G. Knepley } 59985fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 59995fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60005fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60019566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60029566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 600307218a29SMatthew G. Knepley if (dsIn) { 600407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 600507218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 600607218a29SMatthew G. Knepley } 60075fedec97SMatthew G. Knepley } 60085fedec97SMatthew G. Knepley ++nf; 60095fedec97SMatthew G. Knepley } 60105fedec97SMatthew G. Knepley } 6011e5e52638SMatthew G. Knepley } 601207218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 601307218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60149566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 601507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6016e5e52638SMatthew G. Knepley } 60179566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6018e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6019083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6020083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 602107218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6022083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6023083401c6SMatthew G. Knepley const PetscInt *fld; 60245fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60255fedec97SMatthew G. Knepley PetscBool isCohesive; 6026e5e52638SMatthew G. Knepley 60279566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60289566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6031083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6032083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60335fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6034e5e52638SMatthew G. Knepley PetscClassId id; 6035e5e52638SMatthew G. Knepley 60365fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60379566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60385fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 603907218a29SMatthew G. Knepley if (isCohesive) { 604007218a29SMatthew G. Knepley if (!isCohesiveField) { 604107218a29SMatthew G. Knepley PetscObject bdDisc; 604207218a29SMatthew G. Knepley 604307218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 604407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 604507218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 604607218a29SMatthew G. Knepley } else { 60479566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 604807218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 604907218a29SMatthew G. Knepley } 605007218a29SMatthew G. Knepley } else { 605107218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 605207218a29SMatthew G. Knepley } 6053083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6055e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6056e5e52638SMatthew G. Knepley } 60579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6058e5e52638SMatthew G. Knepley } 6059f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60609566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6061f9244615SMatthew G. Knepley if (flg) { 60623b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60633b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 606407218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60653b4aee56SMatthew G. Knepley PetscInt Nf, f; 60663b4aee56SMatthew G. Knepley 60679566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 606807218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 606907218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 607007218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 607107218a29SMatthew G. Knepley } 60723b4aee56SMatthew G. Knepley } 6073f9244615SMatthew G. Knepley } 6074e5e52638SMatthew G. Knepley /* Setup DSes */ 6075e5e52638SMatthew G. Knepley if (doSetup) { 607607218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6077cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6078cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6079cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6080cf1363e4SMatthew G. Knepley } 608107218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 608207218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 608307218a29SMatthew G. Knepley } 6084e5e52638SMatthew G. Knepley } 60853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6086e5e52638SMatthew G. Knepley } 6087e5e52638SMatthew G. Knepley 6088e5e52638SMatthew G. Knepley /*@ 6089d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6090d2b2dc1eSMatthew G. Knepley 6091d2b2dc1eSMatthew G. Knepley Input Parameters: 6092d2b2dc1eSMatthew G. Knepley + dm - The DM 6093d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6094d2b2dc1eSMatthew G. Knepley 6095d2b2dc1eSMatthew G. Knepley Level: developer 6096d2b2dc1eSMatthew G. Knepley 6097d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6098d2b2dc1eSMatthew G. Knepley @*/ 6099d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6100d2b2dc1eSMatthew G. Knepley { 6101d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6102d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6103d2b2dc1eSMatthew G. Knepley 6104d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6105d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6106d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6107d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6108d2b2dc1eSMatthew G. Knepley PetscObject obj; 6109d2b2dc1eSMatthew G. Knepley PetscClassId id; 6110d2b2dc1eSMatthew G. Knepley 6111d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6112d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6113d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6114d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6115d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6116d2b2dc1eSMatthew G. Knepley 6117d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6118d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6119d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6120d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6121d2b2dc1eSMatthew G. Knepley } 6122d2b2dc1eSMatthew G. Knepley if (tensor) { 6123d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6124d2b2dc1eSMatthew G. Knepley } else { 6125d2b2dc1eSMatthew G. Knepley PetscSection s; 6126d2b2dc1eSMatthew G. Knepley 6127d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6128d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6129d2b2dc1eSMatthew G. Knepley } 6130d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6131d2b2dc1eSMatthew G. Knepley } 6132d2b2dc1eSMatthew G. Knepley 6133d2b2dc1eSMatthew G. Knepley /*@ 6134bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61357f96f943SMatthew G. Knepley 613620f4b53cSBarry Smith Collective 6137f2cacb80SMatthew G. Knepley 61387f96f943SMatthew G. Knepley Input Parameters: 6139bb7acecfSBarry Smith + dm - The `DM` 61407f96f943SMatthew G. Knepley - time - The time 61417f96f943SMatthew G. Knepley 61427f96f943SMatthew G. Knepley Output Parameters: 614320f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 614420f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 614520f4b53cSBarry Smith 614620f4b53cSBarry Smith Level: developer 61477f96f943SMatthew G. Knepley 6148bb7acecfSBarry Smith Note: 6149bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61507f96f943SMatthew G. Knepley 61511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61527f96f943SMatthew G. Knepley @*/ 6153d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6154d71ae5a4SJacob Faibussowitsch { 61557f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61567f96f943SMatthew G. Knepley void **ectxs; 6157f60fa741SMatthew G. Knepley Vec locu, locu_t; 61587f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61597f96f943SMatthew G. Knepley 61607f96f943SMatthew G. Knepley PetscFunctionBegin; 6161f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6162f60fa741SMatthew G. Knepley if (u) { 6163f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6164f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6165f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6166f60fa741SMatthew G. Knepley } 6167f60fa741SMatthew G. Knepley if (u_t) { 6168f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6169f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6170f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6171f60fa741SMatthew G. Knepley } 61729566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 61739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 61749566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61757f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 61767f96f943SMatthew G. Knepley PetscDS ds; 61777f96f943SMatthew G. Knepley DMLabel label; 61787f96f943SMatthew G. Knepley IS fieldIS; 61797f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 61807f96f943SMatthew G. Knepley PetscInt dsNf, f; 61817f96f943SMatthew G. Knepley 618207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 61839566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 61849566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 61859566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 61869566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6187f2cacb80SMatthew G. Knepley if (u) { 6188f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6189f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6190f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 61917f96f943SMatthew G. Knepley } 6192f2cacb80SMatthew G. Knepley if (u_t) { 61939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 61949566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6195f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6196f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6197f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6198f2cacb80SMatthew G. Knepley } 61999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6200f2cacb80SMatthew G. Knepley } 6201f2cacb80SMatthew G. Knepley if (u) { 62029566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62039566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6204f2cacb80SMatthew G. Knepley } 6205f2cacb80SMatthew G. Knepley if (u_t) { 62069566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62079566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6208f2cacb80SMatthew G. Knepley } 62099566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6210f60fa741SMatthew G. Knepley if (u) { 6211f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6212f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6213f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6214f60fa741SMatthew G. Knepley } 6215f60fa741SMatthew G. Knepley if (u_t) { 6216f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6217f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6218f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6219f60fa741SMatthew G. Knepley } 62203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62217f96f943SMatthew G. Knepley } 62227f96f943SMatthew G. Knepley 622307218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6224d71ae5a4SJacob Faibussowitsch { 622507218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 622645480ffeSMatthew G. Knepley 622745480ffeSMatthew G. Knepley PetscFunctionBegin; 62289566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 622907218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 623007218a29SMatthew G. Knepley if (dsIn) { 623107218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 623207218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 623345480ffeSMatthew G. Knepley } 623407218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62359566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 623607218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 623845480ffeSMatthew G. Knepley } 623945480ffeSMatthew G. Knepley 62407f96f943SMatthew G. Knepley /*@ 6241bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6242e5e52638SMatthew G. Knepley 624320f4b53cSBarry Smith Collective 6244e5e52638SMatthew G. Knepley 6245e5e52638SMatthew G. Knepley Input Parameter: 6246bb7acecfSBarry Smith . dm - The `DM` 6247e5e52638SMatthew G. Knepley 6248e5e52638SMatthew G. Knepley Output Parameter: 6249bb7acecfSBarry Smith . newdm - The `DM` 6250e5e52638SMatthew G. Knepley 6251e5e52638SMatthew G. Knepley Level: advanced 6252e5e52638SMatthew G. Knepley 62531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6254e5e52638SMatthew G. Knepley @*/ 6255d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6256d71ae5a4SJacob Faibussowitsch { 6257e5e52638SMatthew G. Knepley PetscInt Nds, s; 6258e5e52638SMatthew G. Knepley 6259e5e52638SMatthew G. Knepley PetscFunctionBegin; 62603ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62619566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62629566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6263e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6264e5e52638SMatthew G. Knepley DMLabel label; 6265b3cf3223SMatthew G. Knepley IS fields; 626607218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6267783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6268e5e52638SMatthew G. Knepley 626907218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6270b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 627107218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6272d5b43468SJose E. Roman /* Complete new labels in the new DS */ 627307218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 62749566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6275783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6276b8025e53SMatthew G. Knepley PetscWeakForm wf; 627745480ffeSMatthew G. Knepley DMLabel label; 6278783e2ec8SMatthew G. Knepley PetscInt field; 6279783e2ec8SMatthew G. Knepley 62809566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 62819566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6282783e2ec8SMatthew G. Knepley } 6283e5e52638SMatthew G. Knepley } 6284799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 62853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6286e5e52638SMatthew G. Knepley } 6287e5e52638SMatthew G. Knepley 6288e5e52638SMatthew G. Knepley /*@ 6289bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6290e5e52638SMatthew G. Knepley 629120f4b53cSBarry Smith Collective 6292e5e52638SMatthew G. Knepley 6293e5e52638SMatthew G. Knepley Input Parameter: 6294bb7acecfSBarry Smith . dm - The `DM` 6295e5e52638SMatthew G. Knepley 6296e5e52638SMatthew G. Knepley Output Parameter: 6297bb7acecfSBarry Smith . newdm - The `DM` 6298e5e52638SMatthew G. Knepley 6299e5e52638SMatthew G. Knepley Level: advanced 6300e5e52638SMatthew G. Knepley 630160225df5SJacob Faibussowitsch Developer Notes: 6302bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6303bb7acecfSBarry Smith 63041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6305e5e52638SMatthew G. Knepley @*/ 6306d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6307d71ae5a4SJacob Faibussowitsch { 6308e5e52638SMatthew G. Knepley PetscFunctionBegin; 63099566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 63109566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 63113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6312e5e52638SMatthew G. Knepley } 6313e5e52638SMatthew G. Knepley 6314c73cfb54SMatthew G. Knepley /*@ 6315bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6316c73cfb54SMatthew G. Knepley 631720f4b53cSBarry Smith Not Collective 6318c73cfb54SMatthew G. Knepley 6319c73cfb54SMatthew G. Knepley Input Parameter: 6320bb7acecfSBarry Smith . dm - The `DM` 6321c73cfb54SMatthew G. Knepley 6322c73cfb54SMatthew G. Knepley Output Parameter: 6323c73cfb54SMatthew G. Knepley . dim - The topological dimension 6324c73cfb54SMatthew G. Knepley 6325c73cfb54SMatthew G. Knepley Level: beginner 6326c73cfb54SMatthew G. Knepley 63271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6328c73cfb54SMatthew G. Knepley @*/ 6329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6330d71ae5a4SJacob Faibussowitsch { 6331c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6332c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63334f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6334c73cfb54SMatthew G. Knepley *dim = dm->dim; 63353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6336c73cfb54SMatthew G. Knepley } 6337c73cfb54SMatthew G. Knepley 6338c73cfb54SMatthew G. Knepley /*@ 6339bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6340c73cfb54SMatthew G. Knepley 634120f4b53cSBarry Smith Collective 6342c73cfb54SMatthew G. Knepley 6343c73cfb54SMatthew G. Knepley Input Parameters: 6344bb7acecfSBarry Smith + dm - The `DM` 6345c73cfb54SMatthew G. Knepley - dim - The topological dimension 6346c73cfb54SMatthew G. Knepley 6347c73cfb54SMatthew G. Knepley Level: beginner 6348c73cfb54SMatthew G. Knepley 63491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6350c73cfb54SMatthew G. Knepley @*/ 6351d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6352d71ae5a4SJacob Faibussowitsch { 6353e5e52638SMatthew G. Knepley PetscDS ds; 635445480ffeSMatthew G. Knepley PetscInt Nds, n; 6355f17e8794SMatthew G. Knepley 6356c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6357c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6358c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6359c73cfb54SMatthew G. Knepley dm->dim = dim; 6360d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63619566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 636245480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 636307218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63649566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 636545480ffeSMatthew G. Knepley } 6366d17bd122SMatthew G. Knepley } 63673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368c73cfb54SMatthew G. Knepley } 6369c73cfb54SMatthew G. Knepley 6370793f3fe5SMatthew G. Knepley /*@ 6371793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6372793f3fe5SMatthew G. Knepley 637320f4b53cSBarry Smith Collective 6374793f3fe5SMatthew G. Knepley 6375793f3fe5SMatthew G. Knepley Input Parameters: 6376bb7acecfSBarry Smith + dm - the `DM` 6377793f3fe5SMatthew G. Knepley - dim - the dimension 6378793f3fe5SMatthew G. Knepley 6379793f3fe5SMatthew G. Knepley Output Parameters: 6380793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6381aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6382793f3fe5SMatthew G. Knepley 638320f4b53cSBarry Smith Level: intermediate 638420f4b53cSBarry Smith 6385793f3fe5SMatthew G. Knepley Note: 6386793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6387a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6388793f3fe5SMatthew G. Knepley then the interval is empty. 6389793f3fe5SMatthew G. Knepley 63901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6391793f3fe5SMatthew G. Knepley @*/ 6392d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6393d71ae5a4SJacob Faibussowitsch { 6394793f3fe5SMatthew G. Knepley PetscInt d; 6395793f3fe5SMatthew G. Knepley 6396793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6397793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63989566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 63997a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6400dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6402793f3fe5SMatthew G. Knepley } 6403793f3fe5SMatthew G. Knepley 64046636e97aSMatthew G Knepley /*@ 6405bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6406f4d763aaSMatthew G. Knepley 640720f4b53cSBarry Smith Collective 64088f700142SStefano Zampini 6409f4d763aaSMatthew G. Knepley Input Parameter: 6410bb7acecfSBarry Smith . dm - The original `DM` 6411f4d763aaSMatthew G. Knepley 6412f4d763aaSMatthew G. Knepley Output Parameter: 6413bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6414f4d763aaSMatthew G. Knepley 6415f4d763aaSMatthew G. Knepley Level: intermediate 6416f4d763aaSMatthew G. Knepley 6417bb7acecfSBarry Smith Note: 6418bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6419bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6420bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6421bb7acecfSBarry Smith 64221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6423f4d763aaSMatthew G. Knepley @*/ 6424d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6425d71ae5a4SJacob Faibussowitsch { 6426c26acbdeSMatthew G. Knepley PetscSection section; 6427eb9d3e4dSMatthew G. Knepley IS perm; 6428eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 642914f150ffSMatthew G. Knepley 643014f150ffSMatthew G. Knepley PetscFunctionBegin; 643114f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64324f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64339566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64349566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6435eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6436eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6437eb9d3e4dSMatthew G. Knepley PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6438eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6439c26acbdeSMatthew G. Knepley *odm = dm; 64403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6441c26acbdeSMatthew G. Knepley } 644214f150ffSMatthew G. Knepley if (!dm->dmBC) { 6443c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 644414f150ffSMatthew G. Knepley PetscSF sf; 6445eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 644614f150ffSMatthew G. Knepley 64479566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64489566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64499566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64509566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64519566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 64529566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6453eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64549566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64559566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 645614f150ffSMatthew G. Knepley } 645714f150ffSMatthew G. Knepley *odm = dm->dmBC; 64583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 645914f150ffSMatthew G. Knepley } 6460f4d763aaSMatthew G. Knepley 6461f4d763aaSMatthew G. Knepley /*@ 6462cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6463f4d763aaSMatthew G. Knepley 6464f4d763aaSMatthew G. Knepley Input Parameter: 6465bb7acecfSBarry Smith . dm - The original `DM` 6466f4d763aaSMatthew G. Knepley 6467cdb7a50dSMatthew G. Knepley Output Parameters: 6468cdb7a50dSMatthew G. Knepley + num - The output sequence number 6469cdb7a50dSMatthew G. Knepley - val - The output sequence value 6470f4d763aaSMatthew G. Knepley 6471f4d763aaSMatthew G. Knepley Level: intermediate 6472f4d763aaSMatthew G. Knepley 6473bb7acecfSBarry Smith Note: 6474bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6475bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6476bb7acecfSBarry Smith 647760225df5SJacob Faibussowitsch Developer Notes: 6478bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6479bb7acecfSBarry Smith not directly related to the `DM`. 6480f4d763aaSMatthew G. Knepley 64811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6482f4d763aaSMatthew G. Knepley @*/ 6483d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6484d71ae5a4SJacob Faibussowitsch { 6485f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6486f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64879371c9d4SSatish Balay if (num) { 64884f572ea9SToby Isaac PetscAssertPointer(num, 2); 64899371c9d4SSatish Balay *num = dm->outputSequenceNum; 64909371c9d4SSatish Balay } 64919371c9d4SSatish Balay if (val) { 64924f572ea9SToby Isaac PetscAssertPointer(val, 3); 64939371c9d4SSatish Balay *val = dm->outputSequenceVal; 64949371c9d4SSatish Balay } 64953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6496f4d763aaSMatthew G. Knepley } 6497f4d763aaSMatthew G. Knepley 6498f4d763aaSMatthew G. Knepley /*@ 6499cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6500f4d763aaSMatthew G. Knepley 6501f4d763aaSMatthew G. Knepley Input Parameters: 6502bb7acecfSBarry Smith + dm - The original `DM` 6503cdb7a50dSMatthew G. Knepley . num - The output sequence number 6504cdb7a50dSMatthew G. Knepley - val - The output sequence value 6505f4d763aaSMatthew G. Knepley 6506f4d763aaSMatthew G. Knepley Level: intermediate 6507f4d763aaSMatthew G. Knepley 6508bb7acecfSBarry Smith Note: 6509bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6510bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6511f4d763aaSMatthew G. Knepley 65121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6513f4d763aaSMatthew G. Knepley @*/ 6514d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6515d71ae5a4SJacob Faibussowitsch { 6516f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6517f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6518f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6519cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6521cdb7a50dSMatthew G. Knepley } 6522cdb7a50dSMatthew G. Knepley 6523cdb7a50dSMatthew G. Knepley /*@C 6524bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6525cdb7a50dSMatthew G. Knepley 6526cdb7a50dSMatthew G. Knepley Input Parameters: 6527bb7acecfSBarry Smith + dm - The original `DM` 6528a4e35b19SJacob Faibussowitsch . viewer - The viewer to get it from 6529cdb7a50dSMatthew G. Knepley . name - The sequence name 6530cdb7a50dSMatthew G. Knepley - num - The output sequence number 6531cdb7a50dSMatthew G. Knepley 6532cdb7a50dSMatthew G. Knepley Output Parameter: 6533cdb7a50dSMatthew G. Knepley . val - The output sequence value 6534cdb7a50dSMatthew G. Knepley 6535cdb7a50dSMatthew G. Knepley Level: intermediate 6536cdb7a50dSMatthew G. Knepley 6537bb7acecfSBarry Smith Note: 6538bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6539bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6540bb7acecfSBarry Smith 654160225df5SJacob Faibussowitsch Developer Notes: 6542bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6543cdb7a50dSMatthew G. Knepley 65441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6545cdb7a50dSMatthew G. Knepley @*/ 6546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6547d71ae5a4SJacob Faibussowitsch { 6548cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6549cdb7a50dSMatthew G. Knepley 6550cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6551cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6552cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 65534f572ea9SToby Isaac PetscAssertPointer(val, 5); 65549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6555cdb7a50dSMatthew G. Knepley if (ishdf5) { 6556cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6557cdb7a50dSMatthew G. Knepley PetscScalar value; 6558cdb7a50dSMatthew G. Knepley 65599566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65604aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6561cdb7a50dSMatthew G. Knepley #endif 6562cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6564f4d763aaSMatthew G. Knepley } 65658e4ac7eaSMatthew G. Knepley 65668e4ac7eaSMatthew G. Knepley /*@ 6567bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65688e4ac7eaSMatthew G. Knepley 656920f4b53cSBarry Smith Not Collective 65708e4ac7eaSMatthew G. Knepley 65718e4ac7eaSMatthew G. Knepley Input Parameter: 6572bb7acecfSBarry Smith . dm - The `DM` 65738e4ac7eaSMatthew G. Knepley 65748e4ac7eaSMatthew G. Knepley Output Parameter: 6575bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 65768e4ac7eaSMatthew G. Knepley 65778e4ac7eaSMatthew G. Knepley Level: beginner 65788e4ac7eaSMatthew G. Knepley 65791cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 65808e4ac7eaSMatthew G. Knepley @*/ 6581d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6582d71ae5a4SJacob Faibussowitsch { 65838e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 65848e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65854f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 65868e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 65873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 65888e4ac7eaSMatthew G. Knepley } 65898e4ac7eaSMatthew G. Knepley 65908e4ac7eaSMatthew G. Knepley /*@ 6591bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65928e4ac7eaSMatthew G. Knepley 659320f4b53cSBarry Smith Collective 65948e4ac7eaSMatthew G. Knepley 65958e4ac7eaSMatthew G. Knepley Input Parameters: 6596bb7acecfSBarry Smith + dm - The `DM` 6597bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 65988e4ac7eaSMatthew G. Knepley 6599bb7acecfSBarry Smith Note: 6600bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66015d3b26e6SMatthew G. Knepley 66028e4ac7eaSMatthew G. Knepley Level: beginner 66038e4ac7eaSMatthew G. Knepley 66041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66058e4ac7eaSMatthew G. Knepley @*/ 6606d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6607d71ae5a4SJacob Faibussowitsch { 66088e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66098e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66108833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66118e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66138e4ac7eaSMatthew G. Knepley } 6614c58f1c22SToby Isaac 6615c58f1c22SToby Isaac /*@C 6616bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6617c58f1c22SToby Isaac 6618c58f1c22SToby Isaac Not Collective 6619c58f1c22SToby Isaac 6620c58f1c22SToby Isaac Input Parameters: 6621bb7acecfSBarry Smith + dm - The `DM` object 6622c58f1c22SToby Isaac - name - The label name 6623c58f1c22SToby Isaac 6624c58f1c22SToby Isaac Level: intermediate 6625c58f1c22SToby Isaac 66261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6627c58f1c22SToby Isaac @*/ 6628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6629d71ae5a4SJacob Faibussowitsch { 66305d80c0bfSVaclav Hapla PetscBool flg; 66315d80c0bfSVaclav Hapla DMLabel label; 6632c58f1c22SToby Isaac 6633c58f1c22SToby Isaac PetscFunctionBegin; 6634c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66354f572ea9SToby Isaac PetscAssertPointer(name, 2); 66369566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6637c58f1c22SToby Isaac if (!flg) { 66389566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66399566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66409566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6641c58f1c22SToby Isaac } 66423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6643c58f1c22SToby Isaac } 6644c58f1c22SToby Isaac 6645c58f1c22SToby Isaac /*@C 6646bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 66470fdc7489SMatthew Knepley 66480fdc7489SMatthew Knepley Not Collective 66490fdc7489SMatthew Knepley 66500fdc7489SMatthew Knepley Input Parameters: 6651bb7acecfSBarry Smith + dm - The `DM` object 66520fdc7489SMatthew Knepley . l - The index for the label 66530fdc7489SMatthew Knepley - name - The label name 66540fdc7489SMatthew Knepley 66550fdc7489SMatthew Knepley Level: intermediate 66560fdc7489SMatthew Knepley 66571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 66580fdc7489SMatthew Knepley @*/ 6659d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6660d71ae5a4SJacob Faibussowitsch { 66610fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 66620fdc7489SMatthew Knepley DMLabel label; 66630fdc7489SMatthew Knepley PetscInt Nl, m; 66640fdc7489SMatthew Knepley PetscBool flg, match; 66650fdc7489SMatthew Knepley const char *lname; 66660fdc7489SMatthew Knepley 66670fdc7489SMatthew Knepley PetscFunctionBegin; 66680fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66694f572ea9SToby Isaac PetscAssertPointer(name, 3); 66709566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 66710fdc7489SMatthew Knepley if (!flg) { 66729566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66739566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66749566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 66750fdc7489SMatthew Knepley } 66769566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 667763a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 66780fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 66799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 66809566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 66810fdc7489SMatthew Knepley if (match) break; 66820fdc7489SMatthew Knepley } 66833ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 66840fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 66850fdc7489SMatthew Knepley else prev->next = orig->next; 66860fdc7489SMatthew Knepley if (!l) { 66870fdc7489SMatthew Knepley orig->next = dm->labels; 66880fdc7489SMatthew Knepley dm->labels = orig; 66890fdc7489SMatthew Knepley } else { 6690fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 66910fdc7489SMatthew Knepley orig->next = prev->next; 66920fdc7489SMatthew Knepley prev->next = orig; 66930fdc7489SMatthew Knepley } 66943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66950fdc7489SMatthew Knepley } 66960fdc7489SMatthew Knepley 66970fdc7489SMatthew Knepley /*@C 6698bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6699c58f1c22SToby Isaac 6700c58f1c22SToby Isaac Not Collective 6701c58f1c22SToby Isaac 6702c58f1c22SToby Isaac Input Parameters: 6703bb7acecfSBarry Smith + dm - The `DM` object 6704c58f1c22SToby Isaac . name - The label name 6705c58f1c22SToby Isaac - point - The mesh point 6706c58f1c22SToby Isaac 6707c58f1c22SToby Isaac Output Parameter: 6708c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6709c58f1c22SToby Isaac 6710c58f1c22SToby Isaac Level: beginner 6711c58f1c22SToby Isaac 67121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6713c58f1c22SToby Isaac @*/ 6714d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6715d71ae5a4SJacob Faibussowitsch { 6716c58f1c22SToby Isaac DMLabel label; 6717c58f1c22SToby Isaac 6718c58f1c22SToby Isaac PetscFunctionBegin; 6719c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67204f572ea9SToby Isaac PetscAssertPointer(name, 2); 67219566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67227a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67239566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6725c58f1c22SToby Isaac } 6726c58f1c22SToby Isaac 6727c58f1c22SToby Isaac /*@C 6728bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6729c58f1c22SToby Isaac 6730c58f1c22SToby Isaac Not Collective 6731c58f1c22SToby Isaac 6732c58f1c22SToby Isaac Input Parameters: 6733bb7acecfSBarry Smith + dm - The `DM` object 6734c58f1c22SToby Isaac . name - The label name 6735c58f1c22SToby Isaac . point - The mesh point 6736c58f1c22SToby Isaac - value - The label value for this point 6737c58f1c22SToby Isaac 6738c58f1c22SToby Isaac Output Parameter: 6739c58f1c22SToby Isaac 6740c58f1c22SToby Isaac Level: beginner 6741c58f1c22SToby Isaac 67421cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6743c58f1c22SToby Isaac @*/ 6744d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6745d71ae5a4SJacob Faibussowitsch { 6746c58f1c22SToby Isaac DMLabel label; 6747c58f1c22SToby Isaac 6748c58f1c22SToby Isaac PetscFunctionBegin; 6749c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67504f572ea9SToby Isaac PetscAssertPointer(name, 2); 67519566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6752c58f1c22SToby Isaac if (!label) { 67539566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 67549566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6755c58f1c22SToby Isaac } 67569566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 67573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6758c58f1c22SToby Isaac } 6759c58f1c22SToby Isaac 6760c58f1c22SToby Isaac /*@C 6761bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6762c58f1c22SToby Isaac 6763c58f1c22SToby Isaac Not Collective 6764c58f1c22SToby Isaac 6765c58f1c22SToby Isaac Input Parameters: 6766bb7acecfSBarry Smith + dm - The `DM` object 6767c58f1c22SToby Isaac . name - The label name 6768c58f1c22SToby Isaac . point - The mesh point 6769c58f1c22SToby Isaac - value - The label value for this point 6770c58f1c22SToby Isaac 6771c58f1c22SToby Isaac Level: beginner 6772c58f1c22SToby Isaac 67731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6774c58f1c22SToby Isaac @*/ 6775d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6776d71ae5a4SJacob Faibussowitsch { 6777c58f1c22SToby Isaac DMLabel label; 6778c58f1c22SToby Isaac 6779c58f1c22SToby Isaac PetscFunctionBegin; 6780c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67814f572ea9SToby Isaac PetscAssertPointer(name, 2); 67829566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67833ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 67849566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 67853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6786c58f1c22SToby Isaac } 6787c58f1c22SToby Isaac 6788c58f1c22SToby Isaac /*@C 6789bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6790c58f1c22SToby Isaac 6791c58f1c22SToby Isaac Not Collective 6792c58f1c22SToby Isaac 6793c58f1c22SToby Isaac Input Parameters: 6794bb7acecfSBarry Smith + dm - The `DM` object 6795c58f1c22SToby Isaac - name - The label name 6796c58f1c22SToby Isaac 6797c58f1c22SToby Isaac Output Parameter: 6798c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6799c58f1c22SToby Isaac 6800c58f1c22SToby Isaac Level: beginner 6801c58f1c22SToby Isaac 680260225df5SJacob Faibussowitsch Developer Notes: 6803bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6804bb7acecfSBarry Smith 68051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6806c58f1c22SToby Isaac @*/ 6807d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6808d71ae5a4SJacob Faibussowitsch { 6809c58f1c22SToby Isaac DMLabel label; 6810c58f1c22SToby Isaac 6811c58f1c22SToby Isaac PetscFunctionBegin; 6812c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68134f572ea9SToby Isaac PetscAssertPointer(name, 2); 68144f572ea9SToby Isaac PetscAssertPointer(size, 3); 68159566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6816c58f1c22SToby Isaac *size = 0; 68173ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68189566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6820c58f1c22SToby Isaac } 6821c58f1c22SToby Isaac 6822c58f1c22SToby Isaac /*@C 6823bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6824c58f1c22SToby Isaac 6825c58f1c22SToby Isaac Not Collective 6826c58f1c22SToby Isaac 6827c58f1c22SToby Isaac Input Parameters: 682860225df5SJacob Faibussowitsch + dm - The `DM` object 6829c58f1c22SToby Isaac - name - The label name 6830c58f1c22SToby Isaac 6831c58f1c22SToby Isaac Output Parameter: 683220f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6833c58f1c22SToby Isaac 6834c58f1c22SToby Isaac Level: beginner 6835c58f1c22SToby Isaac 68361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6837c58f1c22SToby Isaac @*/ 6838d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6839d71ae5a4SJacob Faibussowitsch { 6840c58f1c22SToby Isaac DMLabel label; 6841c58f1c22SToby Isaac 6842c58f1c22SToby Isaac PetscFunctionBegin; 6843c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68444f572ea9SToby Isaac PetscAssertPointer(name, 2); 68454f572ea9SToby Isaac PetscAssertPointer(ids, 3); 68469566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6847c58f1c22SToby Isaac *ids = NULL; 6848dab2e251SBlaise Bourdin if (label) { 68499566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6850dab2e251SBlaise Bourdin } else { 6851dab2e251SBlaise Bourdin /* returning an empty IS */ 68529566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6853dab2e251SBlaise Bourdin } 68543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6855c58f1c22SToby Isaac } 6856c58f1c22SToby Isaac 6857c58f1c22SToby Isaac /*@C 6858c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6859c58f1c22SToby Isaac 6860c58f1c22SToby Isaac Not Collective 6861c58f1c22SToby Isaac 6862c58f1c22SToby Isaac Input Parameters: 6863bb7acecfSBarry Smith + dm - The `DM` object 6864c58f1c22SToby Isaac . name - The label name 6865c58f1c22SToby Isaac - value - The stratum value 6866c58f1c22SToby Isaac 6867c58f1c22SToby Isaac Output Parameter: 6868bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6869c58f1c22SToby Isaac 6870c58f1c22SToby Isaac Level: beginner 6871c58f1c22SToby Isaac 68721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6873c58f1c22SToby Isaac @*/ 6874d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6875d71ae5a4SJacob Faibussowitsch { 6876c58f1c22SToby Isaac DMLabel label; 6877c58f1c22SToby Isaac 6878c58f1c22SToby Isaac PetscFunctionBegin; 6879c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68804f572ea9SToby Isaac PetscAssertPointer(name, 2); 68814f572ea9SToby Isaac PetscAssertPointer(size, 4); 68829566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6883c58f1c22SToby Isaac *size = 0; 68843ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68859566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 68863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6887c58f1c22SToby Isaac } 6888c58f1c22SToby Isaac 6889c58f1c22SToby Isaac /*@C 6890c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6891c58f1c22SToby Isaac 6892c58f1c22SToby Isaac Not Collective 6893c58f1c22SToby Isaac 6894c58f1c22SToby Isaac Input Parameters: 6895bb7acecfSBarry Smith + dm - The `DM` object 6896c58f1c22SToby Isaac . name - The label name 6897c58f1c22SToby Isaac - value - The stratum value 6898c58f1c22SToby Isaac 6899c58f1c22SToby Isaac Output Parameter: 690020f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6901c58f1c22SToby Isaac 6902c58f1c22SToby Isaac Level: beginner 6903c58f1c22SToby Isaac 69041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6905c58f1c22SToby Isaac @*/ 6906d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6907d71ae5a4SJacob Faibussowitsch { 6908c58f1c22SToby Isaac DMLabel label; 6909c58f1c22SToby Isaac 6910c58f1c22SToby Isaac PetscFunctionBegin; 6911c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69124f572ea9SToby Isaac PetscAssertPointer(name, 2); 69134f572ea9SToby Isaac PetscAssertPointer(points, 4); 69149566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6915c58f1c22SToby Isaac *points = NULL; 69163ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69179566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6919c58f1c22SToby Isaac } 6920c58f1c22SToby Isaac 69214de306b1SToby Isaac /*@C 69229044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69234de306b1SToby Isaac 69244de306b1SToby Isaac Not Collective 69254de306b1SToby Isaac 69264de306b1SToby Isaac Input Parameters: 6927bb7acecfSBarry Smith + dm - The `DM` object 69284de306b1SToby Isaac . name - The label name 69294de306b1SToby Isaac . value - The stratum value 69304de306b1SToby Isaac - points - The stratum points 69314de306b1SToby Isaac 69324de306b1SToby Isaac Level: beginner 69334de306b1SToby Isaac 69341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 69354de306b1SToby Isaac @*/ 6936d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6937d71ae5a4SJacob Faibussowitsch { 69384de306b1SToby Isaac DMLabel label; 69394de306b1SToby Isaac 69404de306b1SToby Isaac PetscFunctionBegin; 69414de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69424f572ea9SToby Isaac PetscAssertPointer(name, 2); 6943292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 69449566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69453ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69469566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 69473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69484de306b1SToby Isaac } 69494de306b1SToby Isaac 6950c58f1c22SToby Isaac /*@C 6951bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6952c58f1c22SToby Isaac 6953c58f1c22SToby Isaac Not Collective 6954c58f1c22SToby Isaac 6955c58f1c22SToby Isaac Input Parameters: 6956bb7acecfSBarry Smith + dm - The `DM` object 6957c58f1c22SToby Isaac . name - The label name 6958c58f1c22SToby Isaac - value - The label value for this point 6959c58f1c22SToby Isaac 6960c58f1c22SToby Isaac Output Parameter: 6961c58f1c22SToby Isaac 6962c58f1c22SToby Isaac Level: beginner 6963c58f1c22SToby Isaac 69641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6965c58f1c22SToby Isaac @*/ 6966d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6967d71ae5a4SJacob Faibussowitsch { 6968c58f1c22SToby Isaac DMLabel label; 6969c58f1c22SToby Isaac 6970c58f1c22SToby Isaac PetscFunctionBegin; 6971c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69724f572ea9SToby Isaac PetscAssertPointer(name, 2); 69739566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69743ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69759566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 69763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6977c58f1c22SToby Isaac } 6978c58f1c22SToby Isaac 6979c58f1c22SToby Isaac /*@ 6980bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 6981c58f1c22SToby Isaac 6982c58f1c22SToby Isaac Not Collective 6983c58f1c22SToby Isaac 6984c58f1c22SToby Isaac Input Parameter: 6985bb7acecfSBarry Smith . dm - The `DM` object 6986c58f1c22SToby Isaac 6987c58f1c22SToby Isaac Output Parameter: 6988c58f1c22SToby Isaac . numLabels - the number of Labels 6989c58f1c22SToby Isaac 6990c58f1c22SToby Isaac Level: intermediate 6991c58f1c22SToby Isaac 69921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6993c58f1c22SToby Isaac @*/ 6994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6995d71ae5a4SJacob Faibussowitsch { 69965d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6997c58f1c22SToby Isaac PetscInt n = 0; 6998c58f1c22SToby Isaac 6999c58f1c22SToby Isaac PetscFunctionBegin; 7000c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70014f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70029371c9d4SSatish Balay while (next) { 70039371c9d4SSatish Balay ++n; 70049371c9d4SSatish Balay next = next->next; 70059371c9d4SSatish Balay } 7006c58f1c22SToby Isaac *numLabels = n; 70073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7008c58f1c22SToby Isaac } 7009c58f1c22SToby Isaac 7010c58f1c22SToby Isaac /*@C 7011c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7012c58f1c22SToby Isaac 7013c58f1c22SToby Isaac Not Collective 7014c58f1c22SToby Isaac 7015c58f1c22SToby Isaac Input Parameters: 7016bb7acecfSBarry Smith + dm - The `DM` object 7017c58f1c22SToby Isaac - n - the label number 7018c58f1c22SToby Isaac 7019c58f1c22SToby Isaac Output Parameter: 7020c58f1c22SToby Isaac . name - the label name 7021c58f1c22SToby Isaac 7022c58f1c22SToby Isaac Level: intermediate 7023c58f1c22SToby Isaac 702460225df5SJacob Faibussowitsch Developer Notes: 7025bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7026bb7acecfSBarry Smith 70271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7028c58f1c22SToby Isaac @*/ 7029d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 7030d71ae5a4SJacob Faibussowitsch { 70315d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7032c58f1c22SToby Isaac PetscInt l = 0; 7033c58f1c22SToby Isaac 7034c58f1c22SToby Isaac PetscFunctionBegin; 7035c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70364f572ea9SToby Isaac PetscAssertPointer(name, 3); 7037c58f1c22SToby Isaac while (next) { 7038c58f1c22SToby Isaac if (l == n) { 70399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 70403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7041c58f1c22SToby Isaac } 7042c58f1c22SToby Isaac ++l; 7043c58f1c22SToby Isaac next = next->next; 7044c58f1c22SToby Isaac } 704563a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7046c58f1c22SToby Isaac } 7047c58f1c22SToby Isaac 7048c58f1c22SToby Isaac /*@C 7049bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7050c58f1c22SToby Isaac 7051c58f1c22SToby Isaac Not Collective 7052c58f1c22SToby Isaac 7053c58f1c22SToby Isaac Input Parameters: 7054bb7acecfSBarry Smith + dm - The `DM` object 7055c58f1c22SToby Isaac - name - The label name 7056c58f1c22SToby Isaac 7057c58f1c22SToby Isaac Output Parameter: 7058bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7059c58f1c22SToby Isaac 7060c58f1c22SToby Isaac Level: intermediate 7061c58f1c22SToby Isaac 70621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7063c58f1c22SToby Isaac @*/ 7064d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7065d71ae5a4SJacob Faibussowitsch { 70665d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7067d67d17b1SMatthew G. Knepley const char *lname; 7068c58f1c22SToby Isaac 7069c58f1c22SToby Isaac PetscFunctionBegin; 7070c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70714f572ea9SToby Isaac PetscAssertPointer(name, 2); 70724f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7073c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7074c58f1c22SToby Isaac while (next) { 70759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 70769566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7077c58f1c22SToby Isaac if (*hasLabel) break; 7078c58f1c22SToby Isaac next = next->next; 7079c58f1c22SToby Isaac } 70803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7081c58f1c22SToby Isaac } 7082c58f1c22SToby Isaac 7083a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7084c58f1c22SToby Isaac /*@C 708520f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7086c58f1c22SToby Isaac 7087c58f1c22SToby Isaac Not Collective 7088c58f1c22SToby Isaac 7089c58f1c22SToby Isaac Input Parameters: 7090bb7acecfSBarry Smith + dm - The `DM` object 7091c58f1c22SToby Isaac - name - The label name 7092c58f1c22SToby Isaac 7093c58f1c22SToby Isaac Output Parameter: 709420f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7095c58f1c22SToby Isaac 7096bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7097bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7098bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7099bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7100bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7101bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7102bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71036d7c9049SMatthew G. Knepley 7104c58f1c22SToby Isaac Level: intermediate 7105c58f1c22SToby Isaac 710660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7107c58f1c22SToby Isaac @*/ 7108d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7109d71ae5a4SJacob Faibussowitsch { 71105d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7111c58f1c22SToby Isaac PetscBool hasLabel; 7112d67d17b1SMatthew G. Knepley const char *lname; 7113c58f1c22SToby Isaac 7114c58f1c22SToby Isaac PetscFunctionBegin; 7115c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71164f572ea9SToby Isaac PetscAssertPointer(name, 2); 71174f572ea9SToby Isaac PetscAssertPointer(label, 3); 7118c58f1c22SToby Isaac *label = NULL; 7119c58f1c22SToby Isaac while (next) { 71209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71219566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7122c58f1c22SToby Isaac if (hasLabel) { 7123c58f1c22SToby Isaac *label = next->label; 7124c58f1c22SToby Isaac break; 7125c58f1c22SToby Isaac } 7126c58f1c22SToby Isaac next = next->next; 7127c58f1c22SToby Isaac } 71283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7129c58f1c22SToby Isaac } 7130c58f1c22SToby Isaac 7131c58f1c22SToby Isaac /*@C 7132bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7133c58f1c22SToby Isaac 7134c58f1c22SToby Isaac Not Collective 7135c58f1c22SToby Isaac 7136c58f1c22SToby Isaac Input Parameters: 7137bb7acecfSBarry Smith + dm - The `DM` object 7138c58f1c22SToby Isaac - n - the label number 7139c58f1c22SToby Isaac 7140c58f1c22SToby Isaac Output Parameter: 7141c58f1c22SToby Isaac . label - the label 7142c58f1c22SToby Isaac 7143c58f1c22SToby Isaac Level: intermediate 7144c58f1c22SToby Isaac 71451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7146c58f1c22SToby Isaac @*/ 7147d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7148d71ae5a4SJacob Faibussowitsch { 71495d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7150c58f1c22SToby Isaac PetscInt l = 0; 7151c58f1c22SToby Isaac 7152c58f1c22SToby Isaac PetscFunctionBegin; 7153c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71544f572ea9SToby Isaac PetscAssertPointer(label, 3); 7155c58f1c22SToby Isaac while (next) { 7156c58f1c22SToby Isaac if (l == n) { 7157c58f1c22SToby Isaac *label = next->label; 71583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7159c58f1c22SToby Isaac } 7160c58f1c22SToby Isaac ++l; 7161c58f1c22SToby Isaac next = next->next; 7162c58f1c22SToby Isaac } 716363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7164c58f1c22SToby Isaac } 7165c58f1c22SToby Isaac 7166c58f1c22SToby Isaac /*@C 7167bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7168c58f1c22SToby Isaac 7169c58f1c22SToby Isaac Not Collective 7170c58f1c22SToby Isaac 7171c58f1c22SToby Isaac Input Parameters: 7172bb7acecfSBarry Smith + dm - The `DM` object 7173bb7acecfSBarry Smith - label - The `DMLabel` 7174c58f1c22SToby Isaac 7175c58f1c22SToby Isaac Level: developer 7176c58f1c22SToby Isaac 717760225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7178c58f1c22SToby Isaac @*/ 7179d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7180d71ae5a4SJacob Faibussowitsch { 71815d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7182c58f1c22SToby Isaac PetscBool hasLabel; 7183d67d17b1SMatthew G. Knepley const char *lname; 71845d80c0bfSVaclav Hapla PetscBool flg; 7185c58f1c22SToby Isaac 7186c58f1c22SToby Isaac PetscFunctionBegin; 7187c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 71899566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 71907a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 71919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7192c58f1c22SToby Isaac tmpLabel->label = label; 7193c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 71945d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 71955d80c0bfSVaclav Hapla *p = tmpLabel; 71969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 71979566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 71985d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 71999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7200ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7202c58f1c22SToby Isaac } 7203c58f1c22SToby Isaac 7204a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7205c58f1c22SToby Isaac /*@C 72064a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72074a7ee7d0SMatthew G. Knepley 72084a7ee7d0SMatthew G. Knepley Not Collective 72094a7ee7d0SMatthew G. Knepley 72104a7ee7d0SMatthew G. Knepley Input Parameters: 7211bb7acecfSBarry Smith + dm - The `DM` object 7212bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72134a7ee7d0SMatthew G. Knepley 7214bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7215bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7216bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7217bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7218bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7219bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7220bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72214a7ee7d0SMatthew G. Knepley 72224a7ee7d0SMatthew G. Knepley Level: intermediate 72234a7ee7d0SMatthew G. Knepley 72241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72254a7ee7d0SMatthew G. Knepley @*/ 7226d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7227d71ae5a4SJacob Faibussowitsch { 72284a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 72294a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 72304a7ee7d0SMatthew G. Knepley const char *name, *lname; 72314a7ee7d0SMatthew G. Knepley 72324a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 72334a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72344a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 72359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 72364a7ee7d0SMatthew G. Knepley while (next) { 72379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72389566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 72394a7ee7d0SMatthew G. Knepley if (hasLabel) { 72409566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72424a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 72439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 72444a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72459566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 72464a7ee7d0SMatthew G. Knepley next->label = label; 72474a7ee7d0SMatthew G. Knepley break; 72484a7ee7d0SMatthew G. Knepley } 72494a7ee7d0SMatthew G. Knepley next = next->next; 72504a7ee7d0SMatthew G. Knepley } 72513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72524a7ee7d0SMatthew G. Knepley } 72534a7ee7d0SMatthew G. Knepley 72544a7ee7d0SMatthew G. Knepley /*@C 7255bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7256c58f1c22SToby Isaac 7257c58f1c22SToby Isaac Not Collective 7258c58f1c22SToby Isaac 7259c58f1c22SToby Isaac Input Parameters: 7260bb7acecfSBarry Smith + dm - The `DM` object 7261c58f1c22SToby Isaac - name - The label name 7262c58f1c22SToby Isaac 7263c58f1c22SToby Isaac Output Parameter: 726420f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7265bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7266c58f1c22SToby Isaac 7267c58f1c22SToby Isaac Level: developer 7268c58f1c22SToby Isaac 72691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7270c58f1c22SToby Isaac @*/ 7271d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7272d71ae5a4SJacob Faibussowitsch { 727395d578d6SVaclav Hapla DMLabelLink link, *pnext; 7274c58f1c22SToby Isaac PetscBool hasLabel; 7275d67d17b1SMatthew G. Knepley const char *lname; 7276c58f1c22SToby Isaac 7277c58f1c22SToby Isaac PetscFunctionBegin; 7278c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72794f572ea9SToby Isaac PetscAssertPointer(name, 2); 7280e5472504SVaclav Hapla if (label) { 72814f572ea9SToby Isaac PetscAssertPointer(label, 3); 7282c58f1c22SToby Isaac *label = NULL; 7283e5472504SVaclav Hapla } 72845d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 72859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 72869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7287c58f1c22SToby Isaac if (hasLabel) { 728895d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 72899566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 729095d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 72919566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7292ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 729395d578d6SVaclav Hapla if (label) *label = link->label; 72949566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 72959566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7296c58f1c22SToby Isaac break; 7297c58f1c22SToby Isaac } 7298c58f1c22SToby Isaac } 72993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7300c58f1c22SToby Isaac } 7301c58f1c22SToby Isaac 7302306894acSVaclav Hapla /*@ 7303bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7304306894acSVaclav Hapla 7305306894acSVaclav Hapla Not Collective 7306306894acSVaclav Hapla 7307306894acSVaclav Hapla Input Parameters: 7308bb7acecfSBarry Smith + dm - The `DM` object 7309bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 731020f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7311306894acSVaclav Hapla 7312306894acSVaclav Hapla Level: developer 7313306894acSVaclav Hapla 7314bb7acecfSBarry Smith Note: 7315306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7316bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7317306894acSVaclav Hapla *label nullified. 7318306894acSVaclav Hapla 73191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7320306894acSVaclav Hapla @*/ 7321d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7322d71ae5a4SJacob Faibussowitsch { 732343e45a93SVaclav Hapla DMLabelLink link, *pnext; 7324306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7325306894acSVaclav Hapla 7326306894acSVaclav Hapla PetscFunctionBegin; 7327306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73284f572ea9SToby Isaac PetscAssertPointer(label, 2); 73293ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7330306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7331306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 73325d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 733343e45a93SVaclav Hapla if (*label == link->label) { 7334306894acSVaclav Hapla hasLabel = PETSC_TRUE; 733543e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7336306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7337ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 733843e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 73399566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 73409566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7341306894acSVaclav Hapla break; 7342306894acSVaclav Hapla } 7343306894acSVaclav Hapla } 73447a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 73453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7346306894acSVaclav Hapla } 7347306894acSVaclav Hapla 7348c58f1c22SToby Isaac /*@C 7349c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7350c58f1c22SToby Isaac 7351c58f1c22SToby Isaac Not Collective 7352c58f1c22SToby Isaac 7353c58f1c22SToby Isaac Input Parameters: 7354bb7acecfSBarry Smith + dm - The `DM` object 7355c58f1c22SToby Isaac - name - The label name 7356c58f1c22SToby Isaac 7357c58f1c22SToby Isaac Output Parameter: 7358c58f1c22SToby Isaac . output - The flag for output 7359c58f1c22SToby Isaac 7360c58f1c22SToby Isaac Level: developer 7361c58f1c22SToby Isaac 73621cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7363c58f1c22SToby Isaac @*/ 7364d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7365d71ae5a4SJacob Faibussowitsch { 73665d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7367d67d17b1SMatthew G. Knepley const char *lname; 7368c58f1c22SToby Isaac 7369c58f1c22SToby Isaac PetscFunctionBegin; 7370c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73714f572ea9SToby Isaac PetscAssertPointer(name, 2); 73724f572ea9SToby Isaac PetscAssertPointer(output, 3); 7373c58f1c22SToby Isaac while (next) { 7374c58f1c22SToby Isaac PetscBool flg; 7375c58f1c22SToby Isaac 73769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73779566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 73789371c9d4SSatish Balay if (flg) { 73799371c9d4SSatish Balay *output = next->output; 73803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73819371c9d4SSatish Balay } 7382c58f1c22SToby Isaac next = next->next; 7383c58f1c22SToby Isaac } 738498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7385c58f1c22SToby Isaac } 7386c58f1c22SToby Isaac 7387c58f1c22SToby Isaac /*@C 7388bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7389c58f1c22SToby Isaac 7390c58f1c22SToby Isaac Not Collective 7391c58f1c22SToby Isaac 7392c58f1c22SToby Isaac Input Parameters: 7393bb7acecfSBarry Smith + dm - The `DM` object 7394c58f1c22SToby Isaac . name - The label name 7395bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7396c58f1c22SToby Isaac 7397c58f1c22SToby Isaac Level: developer 7398c58f1c22SToby Isaac 73991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7400c58f1c22SToby Isaac @*/ 7401d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7402d71ae5a4SJacob Faibussowitsch { 74035d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7404d67d17b1SMatthew G. Knepley const char *lname; 7405c58f1c22SToby Isaac 7406c58f1c22SToby Isaac PetscFunctionBegin; 7407c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74084f572ea9SToby Isaac PetscAssertPointer(name, 2); 7409c58f1c22SToby Isaac while (next) { 7410c58f1c22SToby Isaac PetscBool flg; 7411c58f1c22SToby Isaac 74129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74139566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74149371c9d4SSatish Balay if (flg) { 74159371c9d4SSatish Balay next->output = output; 74163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74179371c9d4SSatish Balay } 7418c58f1c22SToby Isaac next = next->next; 7419c58f1c22SToby Isaac } 742098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7421c58f1c22SToby Isaac } 7422c58f1c22SToby Isaac 7423c58f1c22SToby Isaac /*@ 7424bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7425c58f1c22SToby Isaac 742620f4b53cSBarry Smith Collective 7427c58f1c22SToby Isaac 7428d8d19677SJose E. Roman Input Parameters: 7429bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7430bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7431bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7432bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7433bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7434c58f1c22SToby Isaac 7435c58f1c22SToby Isaac Level: intermediate 7436c58f1c22SToby Isaac 7437bb7acecfSBarry Smith Note: 74382cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7439c58f1c22SToby Isaac 74401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7441c58f1c22SToby Isaac @*/ 7442d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7443d71ae5a4SJacob Faibussowitsch { 74442cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7445c58f1c22SToby Isaac const char *name; 7446c58f1c22SToby Isaac PetscBool flg; 74475d80c0bfSVaclav Hapla DMLabelLink link; 7448c58f1c22SToby Isaac 74495d80c0bfSVaclav Hapla PetscFunctionBegin; 74505d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 74515d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 74525d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 74535d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 74547a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 74553ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 74565d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 74575d80c0bfSVaclav Hapla label = link->label; 74589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 74595d80c0bfSVaclav Hapla if (!all) { 74609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7461c58f1c22SToby Isaac if (flg) continue; 74629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 74637d5acc75SStefano Zampini if (flg) continue; 74649566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7465ba2698f1SMatthew G. Knepley if (flg) continue; 74665d80c0bfSVaclav Hapla } 74679566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 74682cbb9b06SVaclav Hapla if (labelOld) { 74692cbb9b06SVaclav Hapla switch (emode) { 7470d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7471d71ae5a4SJacob Faibussowitsch continue; 7472d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7473d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7474d71ae5a4SJacob Faibussowitsch break; 7475d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7476d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7477d71ae5a4SJacob Faibussowitsch default: 7478d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 74792cbb9b06SVaclav Hapla } 74802cbb9b06SVaclav Hapla } 74815d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 74829566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 74835d80c0bfSVaclav Hapla } else { 74845d80c0bfSVaclav Hapla labelNew = label; 74855d80c0bfSVaclav Hapla } 74869566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 74879566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7488c58f1c22SToby Isaac } 74893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7490c58f1c22SToby Isaac } 7491461a15a0SLisandro Dalcin 7492609dae6eSVaclav Hapla /*@C 7493b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7494609dae6eSVaclav Hapla 749520f4b53cSBarry Smith Collective; No Fortran Support 7496609dae6eSVaclav Hapla 7497609dae6eSVaclav Hapla Input Parameters: 7498bb7acecfSBarry Smith + dm0 - First `DM` object 7499bb7acecfSBarry Smith - dm1 - Second `DM` object 7500609dae6eSVaclav Hapla 7501a4e35b19SJacob Faibussowitsch Output Parameters: 75025efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 750320f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7504609dae6eSVaclav Hapla 7505609dae6eSVaclav Hapla Level: intermediate 7506609dae6eSVaclav Hapla 7507609dae6eSVaclav Hapla Notes: 7508bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7509bb7acecfSBarry Smith 751020f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7511bb7acecfSBarry Smith 751220f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7513609dae6eSVaclav Hapla 75145efe38ccSVaclav Hapla The output message is set independently on each rank. 7515bb7acecfSBarry Smith 7516bb7acecfSBarry Smith message must be freed with `PetscFree()` 7517bb7acecfSBarry Smith 751820f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7519bb7acecfSBarry Smith 752020f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7521609dae6eSVaclav Hapla 7522609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7523bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7524609dae6eSVaclav Hapla 75251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7526609dae6eSVaclav Hapla @*/ 7527d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7528d71ae5a4SJacob Faibussowitsch { 75295efe38ccSVaclav Hapla PetscInt n, i; 7530609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 75315efe38ccSVaclav Hapla PetscBool eq; 7532609dae6eSVaclav Hapla MPI_Comm comm; 75335efe38ccSVaclav Hapla PetscMPIInt rank; 7534609dae6eSVaclav Hapla 7535609dae6eSVaclav Hapla PetscFunctionBegin; 7536609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7537609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7538609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 75394f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 75404f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 75419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 75429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 75435efe38ccSVaclav Hapla { 75445efe38ccSVaclav Hapla PetscInt n1; 75455efe38ccSVaclav Hapla 75469566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 75479566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 75485efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 754948a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7550712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 75515efe38ccSVaclav Hapla if (!eq) goto finish; 75525efe38ccSVaclav Hapla } 75535efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7554609dae6eSVaclav Hapla DMLabel l0, l1; 7555609dae6eSVaclav Hapla const char *name; 7556609dae6eSVaclav Hapla char *msgInner; 7557609dae6eSVaclav Hapla 7558609dae6eSVaclav Hapla /* Ignore label order */ 75599566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 75609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 75619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7562609dae6eSVaclav Hapla if (!l1) { 756363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 75645efe38ccSVaclav Hapla eq = PETSC_FALSE; 75655efe38ccSVaclav Hapla break; 7566609dae6eSVaclav Hapla } 75679566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 75689566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 75699566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 75705efe38ccSVaclav Hapla if (!eq) break; 7571609dae6eSVaclav Hapla } 7572712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7573609dae6eSVaclav Hapla finish: 75745efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7575609dae6eSVaclav Hapla if (message) { 7576609dae6eSVaclav Hapla *message = NULL; 757748a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 75785efe38ccSVaclav Hapla } else { 757948a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 75809566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 75815efe38ccSVaclav Hapla } 75825efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 75835efe38ccSVaclav Hapla if (equal) *equal = eq; 75847a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 75853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7586609dae6eSVaclav Hapla } 7587609dae6eSVaclav Hapla 7588d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7589d71ae5a4SJacob Faibussowitsch { 7590461a15a0SLisandro Dalcin PetscFunctionBegin; 75914f572ea9SToby Isaac PetscAssertPointer(label, 2); 7592461a15a0SLisandro Dalcin if (!*label) { 75939566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 75949566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7595461a15a0SLisandro Dalcin } 75969566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 75973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7598461a15a0SLisandro Dalcin } 7599461a15a0SLisandro Dalcin 76000fdc7489SMatthew Knepley /* 76010fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76020fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76030fdc7489SMatthew Knepley (label, id) pair in the DM. 76040fdc7489SMatthew Knepley 76050fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76060fdc7489SMatthew Knepley each label. 76070fdc7489SMatthew Knepley */ 7608d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7609d71ae5a4SJacob Faibussowitsch { 76100fdc7489SMatthew Knepley DMUniversalLabel ul; 76110fdc7489SMatthew Knepley PetscBool *active; 76120fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76130fdc7489SMatthew Knepley 76140fdc7489SMatthew Knepley PetscFunctionBegin; 76159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76169566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76179566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76189566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76190fdc7489SMatthew Knepley ul->Nl = 0; 76200fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76210fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76220fdc7489SMatthew Knepley const char *name; 76230fdc7489SMatthew Knepley 76249566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76259566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 76269566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 76270fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 76280fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 76290fdc7489SMatthew Knepley } 76309566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 76310fdc7489SMatthew Knepley ul->Nv = 0; 76320fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76330fdc7489SMatthew Knepley DMLabel label; 76340fdc7489SMatthew Knepley PetscInt nv; 76350fdc7489SMatthew Knepley const char *name; 76360fdc7489SMatthew Knepley 76370fdc7489SMatthew Knepley if (!active[l]) continue; 76389566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76399566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76409566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76419566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 76420fdc7489SMatthew Knepley ul->indices[m] = l; 76430fdc7489SMatthew Knepley ul->Nv += nv; 76440fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 76450fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 76460fdc7489SMatthew Knepley ++m; 76470fdc7489SMatthew Knepley } 76480fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 76490fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 76500fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 76510fdc7489SMatthew Knepley } 76520fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76530fdc7489SMatthew Knepley PetscInt b; 76540fdc7489SMatthew Knepley 76550fdc7489SMatthew Knepley ul->masks[l] = 0; 76560fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 76570fdc7489SMatthew Knepley } 76589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 76590fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76600fdc7489SMatthew Knepley DMLabel label; 76610fdc7489SMatthew Knepley IS valueIS; 76620fdc7489SMatthew Knepley const PetscInt *varr; 76630fdc7489SMatthew Knepley PetscInt nv, v; 76640fdc7489SMatthew Knepley 76650fdc7489SMatthew Knepley if (!active[l]) continue; 76669566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76679566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 76699566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7670ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 76719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 76729566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 76739566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 76740fdc7489SMatthew Knepley ++m; 76750fdc7489SMatthew Knepley } 76769566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 76770fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 76780fdc7489SMatthew Knepley PetscInt uval = 0; 76790fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 76800fdc7489SMatthew Knepley 76810fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76820fdc7489SMatthew Knepley DMLabel label; 76830649b39aSStefano Zampini PetscInt val, defval, loc, nv; 76840fdc7489SMatthew Knepley 76850fdc7489SMatthew Knepley if (!active[l]) continue; 76869566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 76889566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 76899371c9d4SSatish Balay if (val == defval) { 76909371c9d4SSatish Balay ++m; 76919371c9d4SSatish Balay continue; 76929371c9d4SSatish Balay } 76930649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 76940fdc7489SMatthew Knepley marked = PETSC_TRUE; 76959566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 769663a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 76970fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 76980fdc7489SMatthew Knepley ++m; 76990fdc7489SMatthew Knepley } 77009566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77010fdc7489SMatthew Knepley } 77029566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77030fdc7489SMatthew Knepley *universal = ul; 77043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77050fdc7489SMatthew Knepley } 77060fdc7489SMatthew Knepley 7707d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7708d71ae5a4SJacob Faibussowitsch { 77090fdc7489SMatthew Knepley PetscInt l; 77100fdc7489SMatthew Knepley 77110fdc7489SMatthew Knepley PetscFunctionBegin; 77129566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77139566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77149566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77159566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77169566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77170fdc7489SMatthew Knepley *universal = NULL; 77183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77190fdc7489SMatthew Knepley } 77200fdc7489SMatthew Knepley 7721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7722d71ae5a4SJacob Faibussowitsch { 77230fdc7489SMatthew Knepley PetscFunctionBegin; 77244f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77250fdc7489SMatthew Knepley *ulabel = ul->label; 77263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77270fdc7489SMatthew Knepley } 77280fdc7489SMatthew Knepley 7729d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7730d71ae5a4SJacob Faibussowitsch { 77310fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 77320fdc7489SMatthew Knepley 77330fdc7489SMatthew Knepley PetscFunctionBegin; 7734064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 77350fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77369566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 77379566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 77380fdc7489SMatthew Knepley } 77390fdc7489SMatthew Knepley if (preserveOrder) { 77400fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77410fdc7489SMatthew Knepley const char *name; 77420fdc7489SMatthew Knepley PetscBool match; 77430fdc7489SMatthew Knepley 77449566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 77459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 774663a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 77470fdc7489SMatthew Knepley } 77480fdc7489SMatthew Knepley } 77493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77500fdc7489SMatthew Knepley } 77510fdc7489SMatthew Knepley 7752d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7753d71ae5a4SJacob Faibussowitsch { 77540fdc7489SMatthew Knepley PetscInt l; 77550fdc7489SMatthew Knepley 77560fdc7489SMatthew Knepley PetscFunctionBegin; 77570fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77580fdc7489SMatthew Knepley DMLabel label; 77590fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 77600fdc7489SMatthew Knepley 77610fdc7489SMatthew Knepley if (lval) { 77629566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 77639566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 77649566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 77650fdc7489SMatthew Knepley } 77660fdc7489SMatthew Knepley } 77673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77680fdc7489SMatthew Knepley } 7769a8fb8f29SToby Isaac 7770a8fb8f29SToby Isaac /*@ 7771bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7772bb7acecfSBarry Smith 777320f4b53cSBarry Smith Not Collective 7774a8fb8f29SToby Isaac 7775a8fb8f29SToby Isaac Input Parameter: 7776bb7acecfSBarry Smith . dm - The `DM` object 7777a8fb8f29SToby Isaac 7778a8fb8f29SToby Isaac Output Parameter: 7779bb7acecfSBarry Smith . cdm - The coarse `DM` 7780a8fb8f29SToby Isaac 7781a8fb8f29SToby Isaac Level: intermediate 7782a8fb8f29SToby Isaac 77831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7784a8fb8f29SToby Isaac @*/ 7785d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7786d71ae5a4SJacob Faibussowitsch { 7787a8fb8f29SToby Isaac PetscFunctionBegin; 7788a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 77894f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7790a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 77913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7792a8fb8f29SToby Isaac } 7793a8fb8f29SToby Isaac 7794a8fb8f29SToby Isaac /*@ 7795bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7796a8fb8f29SToby Isaac 7797a8fb8f29SToby Isaac Input Parameters: 7798bb7acecfSBarry Smith + dm - The `DM` object 7799bb7acecfSBarry Smith - cdm - The coarse `DM` 7800a8fb8f29SToby Isaac 7801a8fb8f29SToby Isaac Level: intermediate 7802a8fb8f29SToby Isaac 7803bb7acecfSBarry Smith Note: 7804bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7805bb7acecfSBarry Smith 78061cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7807a8fb8f29SToby Isaac @*/ 7808d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7809d71ae5a4SJacob Faibussowitsch { 7810a8fb8f29SToby Isaac PetscFunctionBegin; 7811a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7812a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 781389d734beSBarry Smith if (dm == cdm) cdm = NULL; 78149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78159566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7816a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7818a8fb8f29SToby Isaac } 7819a8fb8f29SToby Isaac 782088bdff64SToby Isaac /*@ 7821bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 782288bdff64SToby Isaac 782388bdff64SToby Isaac Input Parameter: 7824bb7acecfSBarry Smith . dm - The `DM` object 782588bdff64SToby Isaac 782688bdff64SToby Isaac Output Parameter: 7827bb7acecfSBarry Smith . fdm - The fine `DM` 782888bdff64SToby Isaac 782988bdff64SToby Isaac Level: intermediate 783088bdff64SToby Isaac 78311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 783288bdff64SToby Isaac @*/ 7833d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7834d71ae5a4SJacob Faibussowitsch { 783588bdff64SToby Isaac PetscFunctionBegin; 783688bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78374f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 783888bdff64SToby Isaac *fdm = dm->fineMesh; 78393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 784088bdff64SToby Isaac } 784188bdff64SToby Isaac 784288bdff64SToby Isaac /*@ 7843bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 784488bdff64SToby Isaac 784588bdff64SToby Isaac Input Parameters: 7846bb7acecfSBarry Smith + dm - The `DM` object 7847bb7acecfSBarry Smith - fdm - The fine `DM` 784888bdff64SToby Isaac 7849bb7acecfSBarry Smith Level: developer 785088bdff64SToby Isaac 7851bb7acecfSBarry Smith Note: 7852bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7853bb7acecfSBarry Smith 78541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 785588bdff64SToby Isaac @*/ 7856d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7857d71ae5a4SJacob Faibussowitsch { 785888bdff64SToby Isaac PetscFunctionBegin; 785988bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 786088bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 786189d734beSBarry Smith if (dm == fdm) fdm = NULL; 78629566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 78639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 786488bdff64SToby Isaac dm->fineMesh = fdm; 78653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 786688bdff64SToby Isaac } 786788bdff64SToby Isaac 7868a6ba4734SToby Isaac /*@C 7869bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7870a6ba4734SToby Isaac 787120f4b53cSBarry Smith Collective 7872783e2ec8SMatthew G. Knepley 7873a6ba4734SToby Isaac Input Parameters: 7874bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7875bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7876a6ba4734SToby Isaac . name - The BC name 787745480ffeSMatthew G. Knepley . label - The label defining constrained points 7878bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 787945480ffeSMatthew G. Knepley . values - An array of values for constrained points 7880a6ba4734SToby Isaac . field - The field to constrain 788145480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7882a6ba4734SToby Isaac . comps - An array of constrained component numbers 7883a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 788456cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7885a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7886a6ba4734SToby Isaac 788745480ffeSMatthew G. Knepley Output Parameter: 788845480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 788945480ffeSMatthew G. Knepley 7890a6ba4734SToby Isaac Options Database Keys: 7891a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7892a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7893a6ba4734SToby Isaac 789420f4b53cSBarry Smith Level: intermediate 789520f4b53cSBarry Smith 7896bb7acecfSBarry Smith Notes: 789737fdd005SBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 789856cf3b9cSMatthew G. Knepley 789920f4b53cSBarry Smith $ void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 790056cf3b9cSMatthew G. Knepley 7901a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 790256cf3b9cSMatthew G. Knepley 790320f4b53cSBarry Smith .vb 790420f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 790520f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 790620f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 790720f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 790820f4b53cSBarry Smith .ve 790956cf3b9cSMatthew G. Knepley + dim - the spatial dimension 791056cf3b9cSMatthew G. Knepley . Nf - the number of fields 791156cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 791256cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 791356cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 791456cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 791556cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 791656cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 791756cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 791856cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 791956cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 792056cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 792156cf3b9cSMatthew G. Knepley . t - current time 792256cf3b9cSMatthew G. Knepley . x - coordinates of the current point 792356cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 792456cf3b9cSMatthew G. Knepley . constants - constant parameters 792556cf3b9cSMatthew G. Knepley - bcval - output values at the current point 792656cf3b9cSMatthew G. Knepley 79271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7928a6ba4734SToby Isaac @*/ 7929d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7930d71ae5a4SJacob Faibussowitsch { 7931e5e52638SMatthew G. Knepley PetscDS ds; 7932a6ba4734SToby Isaac 7933a6ba4734SToby Isaac PetscFunctionBegin; 7934a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7935783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 793645480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 793745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 793845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 793945480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 794001a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 79419566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7942799db056SMatthew G. Knepley /* Complete label */ 7943799db056SMatthew G. Knepley if (label) { 7944799db056SMatthew G. Knepley PetscObject obj; 7945799db056SMatthew G. Knepley PetscClassId id; 7946799db056SMatthew G. Knepley 7947799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7948799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7949799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7950799db056SMatthew G. Knepley DM plex; 7951799db056SMatthew G. Knepley 7952799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7953799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7954799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7955799db056SMatthew G. Knepley } 7956799db056SMatthew G. Knepley } 79579566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 79583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7959a6ba4734SToby Isaac } 7960a6ba4734SToby Isaac 796145480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7962d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7963d71ae5a4SJacob Faibussowitsch { 7964e5e52638SMatthew G. Knepley PetscDS ds; 7965dff059c6SToby Isaac DMBoundary *lastnext; 7966e6f8dbb6SToby Isaac DSBoundary dsbound; 7967e6f8dbb6SToby Isaac 7968e6f8dbb6SToby Isaac PetscFunctionBegin; 79699566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7970e5e52638SMatthew G. Knepley dsbound = ds->boundary; 797147a1f5adSToby Isaac if (dm->boundary) { 797247a1f5adSToby Isaac DMBoundary next = dm->boundary; 797347a1f5adSToby Isaac 797447a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 79753ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 797647a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 797747a1f5adSToby Isaac while (next) { 797847a1f5adSToby Isaac DMBoundary b = next; 797947a1f5adSToby Isaac 798047a1f5adSToby Isaac next = b->next; 79819566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7982a6ba4734SToby Isaac } 798347a1f5adSToby Isaac dm->boundary = NULL; 7984a6ba4734SToby Isaac } 798547a1f5adSToby Isaac 7986f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 7987e6f8dbb6SToby Isaac while (dsbound) { 7988e6f8dbb6SToby Isaac DMBoundary dmbound; 7989e6f8dbb6SToby Isaac 79909566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7991e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 799245480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 799347a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7994dff059c6SToby Isaac *lastnext = dmbound; 7995f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 7996dff059c6SToby Isaac dsbound = dsbound->next; 7997a6ba4734SToby Isaac } 79983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7999a6ba4734SToby Isaac } 8000a6ba4734SToby Isaac 8001bb7acecfSBarry Smith /* TODO: missing manual page */ 8002d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8003d71ae5a4SJacob Faibussowitsch { 8004b95f2879SToby Isaac DMBoundary b; 8005a6ba4734SToby Isaac 8006a6ba4734SToby Isaac PetscFunctionBegin; 8007a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80084f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8009a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80109566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8011b95f2879SToby Isaac b = dm->boundary; 8012a6ba4734SToby Isaac while (b && !(*isBd)) { 8013e6f8dbb6SToby Isaac DMLabel label = b->label; 8014e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8015a6ba4734SToby Isaac PetscInt i; 8016a6ba4734SToby Isaac 801745480ffeSMatthew G. Knepley if (label) { 80189566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8019a6ba4734SToby Isaac } 8020a6ba4734SToby Isaac b = b->next; 8021a6ba4734SToby Isaac } 80223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8023a6ba4734SToby Isaac } 80244d6f44ffSToby Isaac 80254d6f44ffSToby Isaac /*@C 8026bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8027a6e0b375SMatthew G. Knepley 802820f4b53cSBarry Smith Collective 80294d6f44ffSToby Isaac 80304d6f44ffSToby Isaac Input Parameters: 8031bb7acecfSBarry Smith + dm - The `DM` 80320709b2feSToby Isaac . time - The time 80334d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 80344d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 80354d6f44ffSToby Isaac - mode - The insertion mode for values 80364d6f44ffSToby Isaac 80374d6f44ffSToby Isaac Output Parameter: 80384d6f44ffSToby Isaac . X - vector 80394d6f44ffSToby Isaac 804020f4b53cSBarry Smith Calling sequence of `funcs`: 80414d6f44ffSToby Isaac + dim - The spatial dimension 80428ec8862eSJed Brown . time - The time at which to sample 80434d6f44ffSToby Isaac . x - The coordinates 804477b739a6SMatthew Knepley . Nc - The number of components 80454d6f44ffSToby Isaac . u - The output field values 80464d6f44ffSToby Isaac - ctx - optional user-defined function context 80474d6f44ffSToby Isaac 80484d6f44ffSToby Isaac Level: developer 80494d6f44ffSToby Isaac 8050bb7acecfSBarry Smith Developer Notes: 8051bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8052bb7acecfSBarry Smith 8053bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8054bb7acecfSBarry Smith 80551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 80564d6f44ffSToby Isaac @*/ 8057a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8058d71ae5a4SJacob Faibussowitsch { 80594d6f44ffSToby Isaac Vec localX; 80604d6f44ffSToby Isaac 80614d6f44ffSToby Isaac PetscFunctionBegin; 80624d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8063708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 80649566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8065f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80669566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 80679566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80689566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80699566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8070708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 80713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80724d6f44ffSToby Isaac } 80734d6f44ffSToby Isaac 8074a6e0b375SMatthew G. Knepley /*@C 8075bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8076a6e0b375SMatthew G. Knepley 807720f4b53cSBarry Smith Not Collective 8078a6e0b375SMatthew G. Knepley 8079a6e0b375SMatthew G. Knepley Input Parameters: 8080bb7acecfSBarry Smith + dm - The `DM` 8081a6e0b375SMatthew G. Knepley . time - The time 8082a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8083a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8084a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8085a6e0b375SMatthew G. Knepley 8086a6e0b375SMatthew G. Knepley Output Parameter: 8087a6e0b375SMatthew G. Knepley . localX - vector 8088a6e0b375SMatthew G. Knepley 808920f4b53cSBarry Smith Calling sequence of `funcs`: 8090a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8091a4e35b19SJacob Faibussowitsch . time - The current timestep 8092a6e0b375SMatthew G. Knepley . x - The coordinates 809377b739a6SMatthew Knepley . Nc - The number of components 8094a6e0b375SMatthew G. Knepley . u - The output field values 8095a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8096a6e0b375SMatthew G. Knepley 8097a6e0b375SMatthew G. Knepley Level: developer 8098a6e0b375SMatthew G. Knepley 8099bb7acecfSBarry Smith Developer Notes: 8100bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8101bb7acecfSBarry Smith 8102bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8103bb7acecfSBarry Smith 81041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8105a6e0b375SMatthew G. Knepley @*/ 8106a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8107d71ae5a4SJacob Faibussowitsch { 81084d6f44ffSToby Isaac PetscFunctionBegin; 81094d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8110064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8111fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81134d6f44ffSToby Isaac } 81144d6f44ffSToby Isaac 8115a6e0b375SMatthew G. Knepley /*@C 8116bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8117a6e0b375SMatthew G. Knepley 811820f4b53cSBarry Smith Collective 8119a6e0b375SMatthew G. Knepley 8120a6e0b375SMatthew G. Knepley Input Parameters: 8121bb7acecfSBarry Smith + dm - The `DM` 8122a6e0b375SMatthew G. Knepley . time - The time 8123a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8124a4e35b19SJacob Faibussowitsch . ids - The ids 8125a4e35b19SJacob Faibussowitsch . Nc - The number of components 8126a4e35b19SJacob Faibussowitsch . comps - The components 8127bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8128a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8129bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8130a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8131a6e0b375SMatthew G. Knepley 8132a6e0b375SMatthew G. Knepley Output Parameter: 8133a6e0b375SMatthew G. Knepley . X - vector 8134a6e0b375SMatthew G. Knepley 813520f4b53cSBarry Smith Calling sequence of `funcs`: 8136a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8137a4e35b19SJacob Faibussowitsch . time - The current timestep 8138a6e0b375SMatthew G. Knepley . x - The coordinates 813977b739a6SMatthew Knepley . Nc - The number of components 8140a6e0b375SMatthew G. Knepley . u - The output field values 8141a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8142a6e0b375SMatthew G. Knepley 8143a6e0b375SMatthew G. Knepley Level: developer 8144a6e0b375SMatthew G. Knepley 8145bb7acecfSBarry Smith Developer Notes: 8146bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8147bb7acecfSBarry Smith 8148bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8149bb7acecfSBarry Smith 81501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8151a6e0b375SMatthew G. Knepley @*/ 8152a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8153d71ae5a4SJacob Faibussowitsch { 81542c53366bSMatthew G. Knepley Vec localX; 81552c53366bSMatthew G. Knepley 81562c53366bSMatthew G. Knepley PetscFunctionBegin; 81572c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81589566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8159f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81609566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 81619566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81629566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81639566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 81643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81652c53366bSMatthew G. Knepley } 81662c53366bSMatthew G. Knepley 8167a6e0b375SMatthew G. Knepley /*@C 8168bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8169a6e0b375SMatthew G. Knepley 817020f4b53cSBarry Smith Not Collective 8171a6e0b375SMatthew G. Knepley 8172a6e0b375SMatthew G. Knepley Input Parameters: 8173bb7acecfSBarry Smith + dm - The `DM` 8174a6e0b375SMatthew G. Knepley . time - The time 8175bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8176a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8177a4e35b19SJacob Faibussowitsch . ids - The ids 8178a4e35b19SJacob Faibussowitsch . Nc - The number of components 8179a4e35b19SJacob Faibussowitsch . comps - The components 8180a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8181a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8182a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8183a6e0b375SMatthew G. Knepley 8184a6e0b375SMatthew G. Knepley Output Parameter: 8185a6e0b375SMatthew G. Knepley . localX - vector 8186a6e0b375SMatthew G. Knepley 818720f4b53cSBarry Smith Calling sequence of `funcs`: 8188a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8189a4e35b19SJacob Faibussowitsch . time - The current time 8190a6e0b375SMatthew G. Knepley . x - The coordinates 819177b739a6SMatthew Knepley . Nc - The number of components 8192a6e0b375SMatthew G. Knepley . u - The output field values 8193a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8194a6e0b375SMatthew G. Knepley 8195a6e0b375SMatthew G. Knepley Level: developer 8196a6e0b375SMatthew G. Knepley 8197bb7acecfSBarry Smith Developer Notes: 8198bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8199bb7acecfSBarry Smith 8200bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8201bb7acecfSBarry Smith 82021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8203a6e0b375SMatthew G. Knepley @*/ 8204a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8205d71ae5a4SJacob Faibussowitsch { 82064d6f44ffSToby Isaac PetscFunctionBegin; 82074d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8208064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8209fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82114d6f44ffSToby Isaac } 82122716604bSToby Isaac 8213a6e0b375SMatthew G. Knepley /*@C 8214bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8215a6e0b375SMatthew G. Knepley 821620f4b53cSBarry Smith Not Collective 8217a6e0b375SMatthew G. Knepley 8218a6e0b375SMatthew G. Knepley Input Parameters: 8219bb7acecfSBarry Smith + dm - The `DM` 8220a6e0b375SMatthew G. Knepley . time - The time 822120f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8222a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8223a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8224a6e0b375SMatthew G. Knepley 8225a6e0b375SMatthew G. Knepley Output Parameter: 8226a6e0b375SMatthew G. Knepley . localX - The output vector 8227a6e0b375SMatthew G. Knepley 822820f4b53cSBarry Smith Calling sequence of `funcs`: 8229a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8230a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8231a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8232a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8233a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8234a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8235a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8236a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8237a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8238a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8239a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8240a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8241a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8242a6e0b375SMatthew G. Knepley . t - The current time 8243a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8244a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8245a6e0b375SMatthew G. Knepley . constants - The value of each constant 8246a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8247a6e0b375SMatthew G. Knepley 8248bb7acecfSBarry Smith Note: 8249bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8250bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8251bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8252a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8253a6e0b375SMatthew G. Knepley 8254a6e0b375SMatthew G. Knepley Level: intermediate 8255a6e0b375SMatthew G. Knepley 8256bb7acecfSBarry Smith Developer Notes: 8257bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8258bb7acecfSBarry Smith 8259bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8260bb7acecfSBarry Smith 8261a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8262a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8263a6e0b375SMatthew G. Knepley @*/ 8264a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8265d71ae5a4SJacob Faibussowitsch { 82668c6c5593SMatthew G. Knepley PetscFunctionBegin; 82678c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8268eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 82698c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8270fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 82713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82728c6c5593SMatthew G. Knepley } 82738c6c5593SMatthew G. Knepley 8274a6e0b375SMatthew G. Knepley /*@C 8275a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8276a6e0b375SMatthew G. Knepley 827720f4b53cSBarry Smith Not Collective 8278a6e0b375SMatthew G. Knepley 8279a6e0b375SMatthew G. Knepley Input Parameters: 8280bb7acecfSBarry Smith + dm - The `DM` 8281a6e0b375SMatthew G. Knepley . time - The time 8282bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8283a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8284a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8285bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 828620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8287a6e0b375SMatthew G. Knepley . localU - The input field vector 8288a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8289a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8290a6e0b375SMatthew G. Knepley 8291a6e0b375SMatthew G. Knepley Output Parameter: 8292a6e0b375SMatthew G. Knepley . localX - The output vector 8293a6e0b375SMatthew G. Knepley 829420f4b53cSBarry Smith Calling sequence of `funcs`: 8295a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8296a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8297a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8298a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8299a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8300a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8301a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8302a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8303a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8304a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8305a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8306a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8307a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8308a6e0b375SMatthew G. Knepley . t - The current time 8309a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8310a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8311a6e0b375SMatthew G. Knepley . constants - The value of each constant 8312a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8313a6e0b375SMatthew G. Knepley 8314bb7acecfSBarry Smith Note: 8315bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8316bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8317bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8318a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8319a6e0b375SMatthew G. Knepley 8320a6e0b375SMatthew G. Knepley Level: intermediate 8321a6e0b375SMatthew G. Knepley 8322bb7acecfSBarry Smith Developer Notes: 8323bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8324bb7acecfSBarry Smith 8325bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8326bb7acecfSBarry Smith 83271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8328a6e0b375SMatthew G. Knepley @*/ 8329a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8330d71ae5a4SJacob Faibussowitsch { 83318c6c5593SMatthew G. Knepley PetscFunctionBegin; 83328c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8333064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8334064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8335fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 83363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83378c6c5593SMatthew G. Knepley } 83388c6c5593SMatthew G. Knepley 83392716604bSToby Isaac /*@C 8340d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8341d29d7c6eSMatthew G. Knepley 834220f4b53cSBarry Smith Not Collective 8343d29d7c6eSMatthew G. Knepley 8344d29d7c6eSMatthew G. Knepley Input Parameters: 8345bb7acecfSBarry Smith + dm - The `DM` 8346d29d7c6eSMatthew G. Knepley . time - The time 8347bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8348d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8349d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8350bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 835120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8352d29d7c6eSMatthew G. Knepley . U - The input field vector 8353d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8354d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8355d29d7c6eSMatthew G. Knepley 8356d29d7c6eSMatthew G. Knepley Output Parameter: 8357d29d7c6eSMatthew G. Knepley . X - The output vector 8358d29d7c6eSMatthew G. Knepley 835920f4b53cSBarry Smith Calling sequence of `funcs`: 8360d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8361d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8362d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8363d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8364d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8365d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8366d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8367d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8368d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8369d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8370d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8371d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8372d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8373d29d7c6eSMatthew G. Knepley . t - The current time 8374d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8375d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8376d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8377d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8378d29d7c6eSMatthew G. Knepley 8379bb7acecfSBarry Smith Note: 8380bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8381bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8382bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8383d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8384d29d7c6eSMatthew G. Knepley 8385d29d7c6eSMatthew G. Knepley Level: intermediate 8386d29d7c6eSMatthew G. Knepley 8387bb7acecfSBarry Smith Developer Notes: 8388bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8389bb7acecfSBarry Smith 8390bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8391bb7acecfSBarry Smith 83921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8393d29d7c6eSMatthew G. Knepley @*/ 8394a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8395d71ae5a4SJacob Faibussowitsch { 8396d29d7c6eSMatthew G. Knepley DM dmIn; 8397d29d7c6eSMatthew G. Knepley Vec localU, localX; 8398d29d7c6eSMatthew G. Knepley 8399d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8400d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8401d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8402d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8403d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8404f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 840572fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 840672fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8407d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8408d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8409d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8410d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8411d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8413d29d7c6eSMatthew G. Knepley } 8414d29d7c6eSMatthew G. Knepley 8415d29d7c6eSMatthew G. Knepley /*@C 8416ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8417ece3a9fcSMatthew G. Knepley 841820f4b53cSBarry Smith Not Collective 8419ece3a9fcSMatthew G. Knepley 8420ece3a9fcSMatthew G. Knepley Input Parameters: 8421bb7acecfSBarry Smith + dm - The `DM` 8422ece3a9fcSMatthew G. Knepley . time - The time 8423bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8424ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8425ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8426bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 842720f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8428ece3a9fcSMatthew G. Knepley . localU - The input field vector 8429ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8430ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8431ece3a9fcSMatthew G. Knepley 8432ece3a9fcSMatthew G. Knepley Output Parameter: 8433ece3a9fcSMatthew G. Knepley . localX - The output vector 8434ece3a9fcSMatthew G. Knepley 843520f4b53cSBarry Smith Calling sequence of `funcs`: 8436ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8437ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8438ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8439ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8440ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8441ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8442ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8443ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8444ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8445ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8446ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8447ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8448ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8449ece3a9fcSMatthew G. Knepley . t - The current time 8450ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8451ece3a9fcSMatthew G. Knepley . n - The face normal 8452ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8453ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8454ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8455ece3a9fcSMatthew G. Knepley 8456ece3a9fcSMatthew G. Knepley Note: 8457bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8458bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8459bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8460ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8461ece3a9fcSMatthew G. Knepley 8462ece3a9fcSMatthew G. Knepley Level: intermediate 8463ece3a9fcSMatthew G. Knepley 8464bb7acecfSBarry Smith Developer Notes: 8465bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8466bb7acecfSBarry Smith 8467bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8468bb7acecfSBarry Smith 84691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8470ece3a9fcSMatthew G. Knepley @*/ 8471a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8472d71ae5a4SJacob Faibussowitsch { 8473ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8474ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8475064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8476064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8477fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8479ece3a9fcSMatthew G. Knepley } 8480ece3a9fcSMatthew G. Knepley 8481ece3a9fcSMatthew G. Knepley /*@C 84822716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 84832716604bSToby Isaac 848420f4b53cSBarry Smith Collective 8485bb7acecfSBarry Smith 84862716604bSToby Isaac Input Parameters: 8487bb7acecfSBarry Smith + dm - The `DM` 84880709b2feSToby Isaac . time - The time 84892716604bSToby Isaac . funcs - The functions to evaluate for each field component 84902716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8491574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 84922716604bSToby Isaac 84932716604bSToby Isaac Output Parameter: 84942716604bSToby Isaac . diff - The diff ||u - u_h||_2 84952716604bSToby Isaac 84962716604bSToby Isaac Level: developer 84972716604bSToby Isaac 8498bb7acecfSBarry Smith Developer Notes: 8499bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8500bb7acecfSBarry Smith 8501bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8502bb7acecfSBarry Smith 85031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85042716604bSToby Isaac @*/ 8505d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8506d71ae5a4SJacob Faibussowitsch { 85072716604bSToby Isaac PetscFunctionBegin; 85082716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8509b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8510fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85122716604bSToby Isaac } 8513b698f381SToby Isaac 8514b698f381SToby Isaac /*@C 8515b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8516b698f381SToby Isaac 851720f4b53cSBarry Smith Collective 8518d083f849SBarry Smith 8519b698f381SToby Isaac Input Parameters: 8520bb7acecfSBarry Smith + dm - The `DM` 8521a4e35b19SJacob Faibussowitsch . time - The time 8522b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8523b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8524574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8525b698f381SToby Isaac - n - The vector to project along 8526b698f381SToby Isaac 8527b698f381SToby Isaac Output Parameter: 8528b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8529b698f381SToby Isaac 8530b698f381SToby Isaac Level: developer 8531b698f381SToby Isaac 8532bb7acecfSBarry Smith Developer Notes: 8533bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8534bb7acecfSBarry Smith 8535bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8536bb7acecfSBarry Smith 85371cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8538b698f381SToby Isaac @*/ 8539d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8540d71ae5a4SJacob Faibussowitsch { 8541b698f381SToby Isaac PetscFunctionBegin; 8542b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8543b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8544fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 85453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8546b698f381SToby Isaac } 8547b698f381SToby Isaac 85482a16baeaSToby Isaac /*@C 85492a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 85502a16baeaSToby Isaac 855120f4b53cSBarry Smith Collective 8552d083f849SBarry Smith 85532a16baeaSToby Isaac Input Parameters: 8554bb7acecfSBarry Smith + dm - The `DM` 85552a16baeaSToby Isaac . time - The time 85562a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 85572a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8558574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85592a16baeaSToby Isaac 85602a16baeaSToby Isaac Output Parameter: 85612a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 85622a16baeaSToby Isaac 85632a16baeaSToby Isaac Level: developer 85642a16baeaSToby Isaac 8565bb7acecfSBarry Smith Developer Notes: 8566bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8567bb7acecfSBarry Smith 8568bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8569bb7acecfSBarry Smith 857042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 85712a16baeaSToby Isaac @*/ 8572d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8573d71ae5a4SJacob Faibussowitsch { 85742a16baeaSToby Isaac PetscFunctionBegin; 85752a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85762a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8577fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 85783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85792a16baeaSToby Isaac } 85802a16baeaSToby Isaac 8581df0b854cSToby Isaac /*@C 8582bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8583502a2867SDave May 8584502a2867SDave May Not Collective 8585502a2867SDave May 8586502a2867SDave May Input Parameter: 8587bb7acecfSBarry Smith . dm - The `DM` 8588502a2867SDave May 85890a19bb7dSprj- Output Parameters: 85900a19bb7dSprj- + nranks - the number of neighbours 85910a19bb7dSprj- - ranks - the neighbors ranks 8592502a2867SDave May 85939bdbcad8SBarry Smith Level: beginner 85949bdbcad8SBarry Smith 8595bb7acecfSBarry Smith Note: 8596bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8597502a2867SDave May 85981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8599502a2867SDave May @*/ 8600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8601d71ae5a4SJacob Faibussowitsch { 8602502a2867SDave May PetscFunctionBegin; 8603502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8604fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8606502a2867SDave May } 8607502a2867SDave May 8608531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8609531c7667SBarry Smith 8610531c7667SBarry Smith /* 8611531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86122b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8613531c7667SBarry Smith */ 861466976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8615d71ae5a4SJacob Faibussowitsch { 8616531c7667SBarry Smith PetscFunctionBegin; 8617531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8618531c7667SBarry Smith Vec x1local; 8619531c7667SBarry Smith DM dm; 86209566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86217a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86229566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86239566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86249566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8625531c7667SBarry Smith x1 = x1local; 8626531c7667SBarry Smith } 86279566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8628531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8629531c7667SBarry Smith DM dm; 86309566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86319566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8632531c7667SBarry Smith } 86333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8634531c7667SBarry Smith } 8635531c7667SBarry Smith 8636531c7667SBarry Smith /*@ 8637bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8638531c7667SBarry Smith 8639a4e35b19SJacob Faibussowitsch Input Parameters: 8640a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8641a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8642531c7667SBarry Smith 86439bdbcad8SBarry Smith Level: advanced 86449bdbcad8SBarry Smith 864560225df5SJacob Faibussowitsch Developer Notes: 8646bb7acecfSBarry Smith this routine exists because the PETSc `Mat` library does not know about the `DM` objects 8647531c7667SBarry Smith 86481cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8649531c7667SBarry Smith @*/ 8650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8651d71ae5a4SJacob Faibussowitsch { 8652531c7667SBarry Smith PetscFunctionBegin; 8653531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 86543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8655531c7667SBarry Smith } 86568320bc6fSPatrick Sanan 86578320bc6fSPatrick Sanan /*@ 8658bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 86598320bc6fSPatrick Sanan 86608320bc6fSPatrick Sanan Collective 86618320bc6fSPatrick Sanan 86628320bc6fSPatrick Sanan Input Parameters: 8663bb7acecfSBarry Smith + dm1 - the first `DM` 8664bb7acecfSBarry Smith - dm2 - the second `DM` 86658320bc6fSPatrick Sanan 86668320bc6fSPatrick Sanan Output Parameters: 8667bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8668bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 86698320bc6fSPatrick Sanan 867020f4b53cSBarry Smith Level: advanced 867120f4b53cSBarry Smith 86728320bc6fSPatrick Sanan Notes: 8673bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 86743d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 86758320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8676bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 86773d862458SPatrick Sanan decomposition, but hold different data. 86788320bc6fSPatrick Sanan 86798320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8680bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 86818320bc6fSPatrick Sanan 8682bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 86838320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 86848320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8685bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 86868320bc6fSPatrick Sanan 8687bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8688bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 86898320bc6fSPatrick Sanan .vb 86908320bc6fSPatrick Sanan ... 86919566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 86928320bc6fSPatrick Sanan if (set && compatible) { 86939566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 86949566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 86959566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 86968320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 86978320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 86988320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 86998320bc6fSPatrick Sanan } 87008320bc6fSPatrick Sanan } 87019566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87029566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87038320bc6fSPatrick Sanan } else { 87048320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87058320bc6fSPatrick Sanan } 87068320bc6fSPatrick Sanan ... 87078320bc6fSPatrick Sanan .ve 87088320bc6fSPatrick Sanan 8709bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87108320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87118320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87128320bc6fSPatrick Sanan always check the "set" output parameter. 87138320bc6fSPatrick Sanan 8714bb7acecfSBarry Smith A `DM` is always compatible with itself. 87158320bc6fSPatrick Sanan 8716bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87178320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87188320bc6fSPatrick Sanan incompatible. 87198320bc6fSPatrick Sanan 87208320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8721bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87228320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87238320bc6fSPatrick Sanan 872460225df5SJacob Faibussowitsch Developer Notes: 8725bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 87263d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8727a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8728bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 87298320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 87303d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8731bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 87328320bc6fSPatrick Sanan 87331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 87348320bc6fSPatrick Sanan @*/ 8735d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8736d71ae5a4SJacob Faibussowitsch { 87378320bc6fSPatrick Sanan PetscMPIInt compareResult; 87388320bc6fSPatrick Sanan DMType type, type2; 87398320bc6fSPatrick Sanan PetscBool sameType; 87408320bc6fSPatrick Sanan 87418320bc6fSPatrick Sanan PetscFunctionBegin; 8742a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 87438320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 87448320bc6fSPatrick Sanan 87458320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8746a5bc1bf3SBarry Smith if (dm1 == dm2) { 87478320bc6fSPatrick Sanan *set = PETSC_TRUE; 87488320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 87493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87508320bc6fSPatrick Sanan } 87518320bc6fSPatrick Sanan 87528320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 87538320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 87548320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 87558320bc6fSPatrick Sanan determined by the implementation-specific logic */ 87569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 87578320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 87588320bc6fSPatrick Sanan *set = PETSC_TRUE; 87598320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 87603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87618320bc6fSPatrick Sanan } 87628320bc6fSPatrick Sanan 87638320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8764a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8765dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 87663ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 87678320bc6fSPatrick Sanan } 87688320bc6fSPatrick Sanan 8769a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 87708320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 87719566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 87729566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 87739566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 87748320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8775dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 87768320bc6fSPatrick Sanan } else { 87778320bc6fSPatrick Sanan *set = PETSC_FALSE; 87788320bc6fSPatrick Sanan } 87793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87808320bc6fSPatrick Sanan } 8781c0f0dcc3SMatthew G. Knepley 8782c0f0dcc3SMatthew G. Knepley /*@C 8783bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8784c0f0dcc3SMatthew G. Knepley 878520f4b53cSBarry Smith Logically Collective 8786c0f0dcc3SMatthew G. Knepley 8787c0f0dcc3SMatthew G. Knepley Input Parameters: 878860225df5SJacob Faibussowitsch + dm - the `DM` 8789c0f0dcc3SMatthew G. Knepley . f - the monitor function 879020f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 879120f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8792c0f0dcc3SMatthew G. Knepley 879320f4b53cSBarry Smith Options Database Key: 879460225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8795c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8796c0f0dcc3SMatthew G. Knepley 87979bdbcad8SBarry Smith Level: intermediate 87989bdbcad8SBarry Smith 8799bb7acecfSBarry Smith Note: 8800c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8801bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8802c0f0dcc3SMatthew G. Knepley order in which they were set. 8803c0f0dcc3SMatthew G. Knepley 880460225df5SJacob Faibussowitsch Fortran Notes: 8805bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8806bb7acecfSBarry Smith 880760225df5SJacob Faibussowitsch Developer Notes: 8808bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8809c0f0dcc3SMatthew G. Knepley 88101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8811c0f0dcc3SMatthew G. Knepley @*/ 8812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8813d71ae5a4SJacob Faibussowitsch { 8814c0f0dcc3SMatthew G. Knepley PetscInt m; 8815c0f0dcc3SMatthew G. Knepley 8816c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8817c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8818c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8819c0f0dcc3SMatthew G. Knepley PetscBool identical; 8820c0f0dcc3SMatthew G. Knepley 88219566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88223ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8823c0f0dcc3SMatthew G. Knepley } 88247a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8825c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8826c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8827c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 88283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8829c0f0dcc3SMatthew G. Knepley } 8830c0f0dcc3SMatthew G. Knepley 8831c0f0dcc3SMatthew G. Knepley /*@ 8832bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8833c0f0dcc3SMatthew G. Knepley 883420f4b53cSBarry Smith Logically Collective 8835c0f0dcc3SMatthew G. Knepley 8836c0f0dcc3SMatthew G. Knepley Input Parameter: 8837c0f0dcc3SMatthew G. Knepley . dm - the DM 8838c0f0dcc3SMatthew G. Knepley 8839c0f0dcc3SMatthew G. Knepley Options Database Key: 8840c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8841bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8842c0f0dcc3SMatthew G. Knepley set via the options database 8843c0f0dcc3SMatthew G. Knepley 88449bdbcad8SBarry Smith Level: intermediate 88459bdbcad8SBarry Smith 8846bb7acecfSBarry Smith Note: 8847bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8848c0f0dcc3SMatthew G. Knepley 88491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8850c0f0dcc3SMatthew G. Knepley @*/ 8851d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8852d71ae5a4SJacob Faibussowitsch { 8853c0f0dcc3SMatthew G. Knepley PetscInt m; 8854c0f0dcc3SMatthew G. Knepley 8855c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8856c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8857c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 88589566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8859c0f0dcc3SMatthew G. Knepley } 8860c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 88613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8862c0f0dcc3SMatthew G. Knepley } 8863c0f0dcc3SMatthew G. Knepley 8864c0f0dcc3SMatthew G. Knepley /*@C 8865c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8866c0f0dcc3SMatthew G. Knepley 886720f4b53cSBarry Smith Collective 8868c0f0dcc3SMatthew G. Knepley 8869c0f0dcc3SMatthew G. Knepley Input Parameters: 8870bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8871c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8872c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8873c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8874c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8875bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8876c0f0dcc3SMatthew G. Knepley 8877c0f0dcc3SMatthew G. Knepley Output Parameter: 8878c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8879c0f0dcc3SMatthew G. Knepley 8880c0f0dcc3SMatthew G. Knepley Level: developer 8881c0f0dcc3SMatthew G. Knepley 88821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8883db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 888460225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8885db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8886c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8887db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8888bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8889c0f0dcc3SMatthew G. Knepley @*/ 8890d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8891d71ae5a4SJacob Faibussowitsch { 8892c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8893c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8894c0f0dcc3SMatthew G. Knepley 8895c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8896c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 88979566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8898c0f0dcc3SMatthew G. Knepley if (*flg) { 8899c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8900c0f0dcc3SMatthew G. Knepley 89019566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8902cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 89039566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 89049566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8905c0f0dcc3SMatthew G. Knepley } 89063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8907c0f0dcc3SMatthew G. Knepley } 8908c0f0dcc3SMatthew G. Knepley 8909c0f0dcc3SMatthew G. Knepley /*@ 8910c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8911c0f0dcc3SMatthew G. Knepley 891220f4b53cSBarry Smith Collective 8913c0f0dcc3SMatthew G. Knepley 89142fe279fdSBarry Smith Input Parameter: 8915bb7acecfSBarry Smith . dm - The `DM` 8916c0f0dcc3SMatthew G. Knepley 8917c0f0dcc3SMatthew G. Knepley Level: developer 8918c0f0dcc3SMatthew G. Knepley 8919a4e35b19SJacob Faibussowitsch Developer Notes: 8920a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8921a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8922a4e35b19SJacob Faibussowitsch concept of discretization. 8923bb7acecfSBarry Smith 89241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8925c0f0dcc3SMatthew G. Knepley @*/ 8926d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8927d71ae5a4SJacob Faibussowitsch { 8928c0f0dcc3SMatthew G. Knepley PetscInt m; 8929c0f0dcc3SMatthew G. Knepley 8930c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 89313ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8932c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 893348a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 89343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8935c0f0dcc3SMatthew G. Knepley } 89362e4af2aeSMatthew G. Knepley 89372e4af2aeSMatthew G. Knepley /*@ 8938bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 89392e4af2aeSMatthew G. Knepley 894020f4b53cSBarry Smith Collective 89412e4af2aeSMatthew G. Knepley 89422e4af2aeSMatthew G. Knepley Input Parameters: 8943bb7acecfSBarry Smith + dm - The `DM` 89446b867d5aSJose E. Roman - sol - The solution vector 89452e4af2aeSMatthew G. Knepley 89466b867d5aSJose E. Roman Input/Output Parameter: 894720f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 89486b867d5aSJose E. Roman contains the error in each field 89496b867d5aSJose E. Roman 89506b867d5aSJose E. Roman Output Parameter: 895120f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 895220f4b53cSBarry Smith 895320f4b53cSBarry Smith Level: developer 89542e4af2aeSMatthew G. Knepley 8955bb7acecfSBarry Smith Note: 8956bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 89572e4af2aeSMatthew G. Knepley 89581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 89592e4af2aeSMatthew G. Knepley @*/ 8960d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8961d71ae5a4SJacob Faibussowitsch { 89622e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 89632e4af2aeSMatthew G. Knepley void **ctxs; 89642e4af2aeSMatthew G. Knepley PetscReal time; 89652e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 89662e4af2aeSMatthew G. Knepley 89672e4af2aeSMatthew G. Knepley PetscFunctionBegin; 89689566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 89699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 89709566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 89712e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 89722e4af2aeSMatthew G. Knepley PetscDS ds; 89732e4af2aeSMatthew G. Knepley DMLabel label; 89742e4af2aeSMatthew G. Knepley IS fieldIS; 89752e4af2aeSMatthew G. Knepley const PetscInt *fields; 89762e4af2aeSMatthew G. Knepley PetscInt dsNf; 89772e4af2aeSMatthew G. Knepley 897807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 89799566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 89809566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 89812e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 89822e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 89839566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 89842e4af2aeSMatthew G. Knepley } 89859566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 89862e4af2aeSMatthew G. Knepley } 8987ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 89889566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 89899566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 89902e4af2aeSMatthew G. Knepley if (errorVec) { 89912e4af2aeSMatthew G. Knepley DM edm; 89922e4af2aeSMatthew G. Knepley DMPolytopeType ct; 89932e4af2aeSMatthew G. Knepley PetscBool simplex; 89942e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 89952e4af2aeSMatthew G. Knepley 89969566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 89979566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 89989566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 89999566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90002e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90019566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90022e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90032e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90042e4af2aeSMatthew G. Knepley PetscQuadrature q; 90052e4af2aeSMatthew G. Knepley const char *name; 90062e4af2aeSMatthew G. Knepley 90079566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90089566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90119566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90129566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90139566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90149566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90152e4af2aeSMatthew G. Knepley } 90169566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90172e4af2aeSMatthew G. Knepley 90189566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90209566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90219566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90222e4af2aeSMatthew G. Knepley } 90239566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90252e4af2aeSMatthew G. Knepley } 90269a2a23afSMatthew G. Knepley 90279a2a23afSMatthew G. Knepley /*@ 9028bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 90299a2a23afSMatthew G. Knepley 903020f4b53cSBarry Smith Not Collective 90319a2a23afSMatthew G. Knepley 90329a2a23afSMatthew G. Knepley Input Parameter: 9033bb7acecfSBarry Smith . dm - The `DM` 90349a2a23afSMatthew G. Knepley 90359a2a23afSMatthew G. Knepley Output Parameter: 9036a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 90379a2a23afSMatthew G. Knepley 90389a2a23afSMatthew G. Knepley Level: advanced 90399a2a23afSMatthew G. Knepley 9040e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 90419a2a23afSMatthew G. Knepley @*/ 9042d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9043d71ae5a4SJacob Faibussowitsch { 90449a2a23afSMatthew G. Knepley PetscFunctionBegin; 90459a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90469566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 90473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90489a2a23afSMatthew G. Knepley } 90499a2a23afSMatthew G. Knepley 90509a2a23afSMatthew G. Knepley /*@ 9051ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 90529a2a23afSMatthew G. Knepley 905320f4b53cSBarry Smith Not Collective 90549a2a23afSMatthew G. Knepley 90559a2a23afSMatthew G. Knepley Input Parameters: 9056bb7acecfSBarry Smith + dm - The `DM` 9057bb7acecfSBarry Smith . label - The `DMLabel` 9058ac17215fSMatthew G. Knepley . value - The label value indicating the region 9059ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 90609a2a23afSMatthew G. Knepley 90619a2a23afSMatthew G. Knepley Output Parameter: 9062bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 90639a2a23afSMatthew G. Knepley 90649bdbcad8SBarry Smith Level: advanced 90659bdbcad8SBarry Smith 9066bb7acecfSBarry Smith Note: 9067bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 906804c51a94SMatthew G. Knepley 9069e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 90709a2a23afSMatthew G. Knepley @*/ 9071d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9072d71ae5a4SJacob Faibussowitsch { 9073ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 907404c51a94SMatthew G. Knepley PetscBool has; 90759a2a23afSMatthew G. Knepley 90769a2a23afSMatthew G. Knepley PetscFunctionBegin; 90779a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90789a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 90799a2a23afSMatthew G. Knepley key.label = label; 90809a2a23afSMatthew G. Knepley key.value = value; 9081ac17215fSMatthew G. Knepley key.part = part; 90829566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 90839566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 90849566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 90853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90869a2a23afSMatthew G. Knepley } 90879a2a23afSMatthew G. Knepley 90889a2a23afSMatthew G. Knepley /*@ 9089bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 90909a2a23afSMatthew G. Knepley 909120f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 90929a2a23afSMatthew G. Knepley 90939a2a23afSMatthew G. Knepley Input Parameters: 9094bb7acecfSBarry Smith + dm - The `DM` 9095bb7acecfSBarry Smith . label - The `DMLabel` 90969a2a23afSMatthew G. Knepley . value - The label value indicating the region 9097ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9098bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 90999a2a23afSMatthew G. Knepley 91009a2a23afSMatthew G. Knepley Level: advanced 91019a2a23afSMatthew G. Knepley 9102e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91039a2a23afSMatthew G. Knepley @*/ 9104d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9105d71ae5a4SJacob Faibussowitsch { 91069a2a23afSMatthew G. Knepley Vec old; 91079a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91089a2a23afSMatthew G. Knepley 91099a2a23afSMatthew G. Knepley PetscFunctionBegin; 91109a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91119a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91129a2a23afSMatthew G. Knepley key.label = label; 91139a2a23afSMatthew G. Knepley key.value = value; 9114ac17215fSMatthew G. Knepley key.part = part; 91159566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91169566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91179566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91189566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9119d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91219a2a23afSMatthew G. Knepley } 91229a2a23afSMatthew G. Knepley 91239a2a23afSMatthew G. Knepley /*@C 9124bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 91259a2a23afSMatthew G. Knepley 912620f4b53cSBarry Smith Not Collective 91279a2a23afSMatthew G. Knepley 91289a2a23afSMatthew G. Knepley Input Parameter: 9129bb7acecfSBarry Smith . dm - The `DM` 91309a2a23afSMatthew G. Knepley 91319a2a23afSMatthew G. Knepley Output Parameters: 9132bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9133bb7acecfSBarry Smith . values - The label values for each `Vec` 9134bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 91359a2a23afSMatthew G. Knepley 91369bdbcad8SBarry Smith Level: advanced 91379bdbcad8SBarry Smith 9138bb7acecfSBarry Smith Note: 9139bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 91409a2a23afSMatthew G. Knepley 9141e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 91429a2a23afSMatthew G. Knepley @*/ 9143d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9144d71ae5a4SJacob Faibussowitsch { 91459a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 91469a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 91479a2a23afSMatthew G. Knepley 91489a2a23afSMatthew G. Knepley PetscFunctionBegin; 91499a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91504f572ea9SToby Isaac PetscAssertPointer(labels, 2); 91514f572ea9SToby Isaac PetscAssertPointer(values, 3); 91524f572ea9SToby Isaac PetscAssertPointer(parts, 4); 91539566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 91549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 91559566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 91569371c9d4SSatish Balay for (i = 0; i < n; ++i) { 91579371c9d4SSatish Balay labels[i] = keys[i].label; 91589371c9d4SSatish Balay values[i] = keys[i].value; 91599371c9d4SSatish Balay parts[i] = keys[i].part; 91609371c9d4SSatish Balay } 91619566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 91623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91639a2a23afSMatthew G. Knepley } 91649a2a23afSMatthew G. Knepley 91659a2a23afSMatthew G. Knepley /*@ 9166bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 91679a2a23afSMatthew G. Knepley 916820f4b53cSBarry Smith Not Collective 91699a2a23afSMatthew G. Knepley 91709a2a23afSMatthew G. Knepley Input Parameter: 9171bb7acecfSBarry Smith . dm - The `DM` 91729a2a23afSMatthew G. Knepley 91739a2a23afSMatthew G. Knepley Output Parameter: 9174bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 91759a2a23afSMatthew G. Knepley 91769a2a23afSMatthew G. Knepley Level: advanced 91779a2a23afSMatthew G. Knepley 9178bb7acecfSBarry Smith Note: 9179bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9180bb7acecfSBarry Smith 9181e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 91829a2a23afSMatthew G. Knepley @*/ 9183d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9184d71ae5a4SJacob Faibussowitsch { 91859a2a23afSMatthew G. Knepley PetscFunctionBegin; 91869a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9187d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9188d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9189e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9190e4d5475eSStefano Zampini 9191e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 91929566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9193d705d0eaSStefano Zampini { 9194d705d0eaSStefano Zampini Vec *auxData; 9195d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9196d705d0eaSStefano Zampini 9197d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9198d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9199d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9200d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9201d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9202e4d5475eSStefano Zampini } 9203e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9204e4d5475eSStefano Zampini } 9205e4d5475eSStefano Zampini 9206e4d5475eSStefano Zampini /*@ 9207e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9208e4d5475eSStefano Zampini 9209e4d5475eSStefano Zampini Not Collective 9210e4d5475eSStefano Zampini 9211e4d5475eSStefano Zampini Input Parameter: 9212e4d5475eSStefano Zampini . dm - The `DM` 9213e4d5475eSStefano Zampini 9214e4d5475eSStefano Zampini Level: advanced 9215e4d5475eSStefano Zampini 9216e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9217e4d5475eSStefano Zampini @*/ 9218e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9219e4d5475eSStefano Zampini { 9220e4d5475eSStefano Zampini Vec *auxData; 9221e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9222e4d5475eSStefano Zampini 9223e4d5475eSStefano Zampini PetscFunctionBegin; 9224e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9225d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9226e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9227d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9228d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9229e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9230e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 92313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92329a2a23afSMatthew G. Knepley } 9233b5a892a1SMatthew G. Knepley 9234b5a892a1SMatthew G. Knepley /*@C 9235bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9236b5a892a1SMatthew G. Knepley 923720f4b53cSBarry Smith Not Collective 9238b5a892a1SMatthew G. Knepley 9239b5a892a1SMatthew G. Knepley Input Parameters: 9240bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9241b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9242b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9243b5a892a1SMatthew G. Knepley 9244b5a892a1SMatthew G. Knepley Output Parameters: 9245bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9246b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9247b5a892a1SMatthew G. Knepley 9248b5a892a1SMatthew G. Knepley Level: advanced 9249b5a892a1SMatthew G. Knepley 9250bb7acecfSBarry Smith Note: 9251bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9252bb7acecfSBarry Smith 925385036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9254bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9255bb7acecfSBarry Smith 9256bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9257bb7acecfSBarry Smith 92581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9259b5a892a1SMatthew G. Knepley @*/ 9260d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9261d71ae5a4SJacob Faibussowitsch { 9262b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 926385036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9264b5a892a1SMatthew G. Knepley PetscInt o, c; 9265b5a892a1SMatthew G. Knepley 9266b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92679371c9d4SSatish Balay if (!nO) { 92689371c9d4SSatish Balay *ornt = 0; 92699371c9d4SSatish Balay *found = PETSC_TRUE; 92703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92719371c9d4SSatish Balay } 9272b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 927385036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9274b5a892a1SMatthew G. Knepley 92759371c9d4SSatish Balay for (c = 0; c < cS; ++c) 92769371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 92779371c9d4SSatish Balay if (c == cS) { 92789371c9d4SSatish Balay *ornt = o; 92799371c9d4SSatish Balay break; 92809371c9d4SSatish Balay } 9281b5a892a1SMatthew G. Knepley } 9282b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 92833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9284b5a892a1SMatthew G. Knepley } 9285b5a892a1SMatthew G. Knepley 9286b5a892a1SMatthew G. Knepley /*@C 9287bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9288b5a892a1SMatthew G. Knepley 928920f4b53cSBarry Smith Not Collective 9290b5a892a1SMatthew G. Knepley 9291b5a892a1SMatthew G. Knepley Input Parameters: 9292bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9293b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9294b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9295b5a892a1SMatthew G. Knepley 92962fe279fdSBarry Smith Output Parameter: 9297bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9298b5a892a1SMatthew G. Knepley 9299b5a892a1SMatthew G. Knepley Level: advanced 9300b5a892a1SMatthew G. Knepley 9301bb7acecfSBarry Smith Note: 9302bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9303bb7acecfSBarry Smith 930460225df5SJacob Faibussowitsch Developer Notes: 9305bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9306bb7acecfSBarry Smith 93071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9308b5a892a1SMatthew G. Knepley @*/ 9309d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9310d71ae5a4SJacob Faibussowitsch { 9311b5a892a1SMatthew G. Knepley PetscBool found; 9312b5a892a1SMatthew G. Knepley 9313b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93149566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93157a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9317b5a892a1SMatthew G. Knepley } 9318b5a892a1SMatthew G. Knepley 9319b5a892a1SMatthew G. Knepley /*@C 9320bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9321b5a892a1SMatthew G. Knepley 932220f4b53cSBarry Smith Not Collective 9323b5a892a1SMatthew G. Knepley 9324b5a892a1SMatthew G. Knepley Input Parameters: 9325bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9326b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9327b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9328b5a892a1SMatthew G. Knepley 9329b5a892a1SMatthew G. Knepley Output Parameters: 9330bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9331b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9332b5a892a1SMatthew G. Knepley 9333b5a892a1SMatthew G. Knepley Level: advanced 9334b5a892a1SMatthew G. Knepley 9335bb7acecfSBarry Smith Note: 9336bb7acecfSBarry Smith An arrangement is a vertex order 9337bb7acecfSBarry Smith 933885036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9339bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9340bb7acecfSBarry Smith 9341bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9342bb7acecfSBarry Smith 934385036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9344b5a892a1SMatthew G. Knepley @*/ 9345d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9346d71ae5a4SJacob Faibussowitsch { 9347b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 934885036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9349b5a892a1SMatthew G. Knepley PetscInt o, c; 9350b5a892a1SMatthew G. Knepley 9351b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93529371c9d4SSatish Balay if (!nO) { 93539371c9d4SSatish Balay *ornt = 0; 93549371c9d4SSatish Balay *found = PETSC_TRUE; 93553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93569371c9d4SSatish Balay } 9357b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 935885036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9359b5a892a1SMatthew G. Knepley 93609371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93619371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 93629371c9d4SSatish Balay if (c == cS) { 93639371c9d4SSatish Balay *ornt = o; 93649371c9d4SSatish Balay break; 93659371c9d4SSatish Balay } 9366b5a892a1SMatthew G. Knepley } 9367b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9369b5a892a1SMatthew G. Knepley } 9370b5a892a1SMatthew G. Knepley 9371b5a892a1SMatthew G. Knepley /*@C 9372bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9373b5a892a1SMatthew G. Knepley 937420f4b53cSBarry Smith Not Collective 9375b5a892a1SMatthew G. Knepley 9376b5a892a1SMatthew G. Knepley Input Parameters: 9377bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9378b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9379b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9380b5a892a1SMatthew G. Knepley 93812fe279fdSBarry Smith Output Parameter: 9382bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9383b5a892a1SMatthew G. Knepley 9384b5a892a1SMatthew G. Knepley Level: advanced 9385b5a892a1SMatthew G. Knepley 9386bb7acecfSBarry Smith Note: 9387bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9388bb7acecfSBarry Smith 938960225df5SJacob Faibussowitsch Developer Notes: 9390bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9391bb7acecfSBarry Smith 93921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9393b5a892a1SMatthew G. Knepley @*/ 9394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9395d71ae5a4SJacob Faibussowitsch { 9396b5a892a1SMatthew G. Knepley PetscBool found; 9397b5a892a1SMatthew G. Knepley 9398b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93999566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94007a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9402b5a892a1SMatthew G. Knepley } 9403012bc364SMatthew G. Knepley 9404012bc364SMatthew G. Knepley /*@C 9405012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9406012bc364SMatthew G. Knepley 940720f4b53cSBarry Smith Not Collective 9408012bc364SMatthew G. Knepley 9409012bc364SMatthew G. Knepley Input Parameters: 9410bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9411012bc364SMatthew G. Knepley - point - Coordinates of the point 9412012bc364SMatthew G. Knepley 94132fe279fdSBarry Smith Output Parameter: 9414012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9415012bc364SMatthew G. Knepley 9416012bc364SMatthew G. Knepley Level: advanced 9417012bc364SMatthew G. Knepley 94181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9419012bc364SMatthew G. Knepley @*/ 9420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9421d71ae5a4SJacob Faibussowitsch { 9422012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9423012bc364SMatthew G. Knepley PetscInt d; 9424012bc364SMatthew G. Knepley 9425012bc364SMatthew G. Knepley PetscFunctionBegin; 9426012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9427012bc364SMatthew G. Knepley switch (ct) { 9428012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9429012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9430012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 94319371c9d4SSatish Balay if (point[d] < -1.0) { 94329371c9d4SSatish Balay *inside = PETSC_FALSE; 94339371c9d4SSatish Balay break; 94349371c9d4SSatish Balay } 9435012bc364SMatthew G. Knepley sum += point[d]; 9436012bc364SMatthew G. Knepley } 94379371c9d4SSatish Balay if (sum > PETSC_SMALL) { 94389371c9d4SSatish Balay *inside = PETSC_FALSE; 94399371c9d4SSatish Balay break; 94409371c9d4SSatish Balay } 9441012bc364SMatthew G. Knepley break; 9442012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9443012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9444012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 94459371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 94469371c9d4SSatish Balay *inside = PETSC_FALSE; 9447012bc364SMatthew G. Knepley break; 94489371c9d4SSatish Balay } 94499371c9d4SSatish Balay break; 9450d71ae5a4SJacob Faibussowitsch default: 9451d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9452012bc364SMatthew G. Knepley } 94533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9454012bc364SMatthew G. Knepley } 9455adc21957SMatthew G. Knepley 9456adc21957SMatthew G. Knepley /*@ 9457adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9458adc21957SMatthew G. Knepley 9459adc21957SMatthew G. Knepley Logically collective 9460adc21957SMatthew G. Knepley 9461adc21957SMatthew G. Knepley Input Parameters: 9462adc21957SMatthew G. Knepley + dm - The DM 9463adc21957SMatthew G. Knepley - reorder - Flag for reordering 9464adc21957SMatthew G. Knepley 9465adc21957SMatthew G. Knepley Level: intermediate 9466adc21957SMatthew G. Knepley 9467adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9468adc21957SMatthew G. Knepley @*/ 9469adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9470adc21957SMatthew G. Knepley { 9471adc21957SMatthew G. Knepley PetscFunctionBegin; 9472adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9473adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9474adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9475adc21957SMatthew G. Knepley } 9476adc21957SMatthew G. Knepley 9477adc21957SMatthew G. Knepley /*@ 9478adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9479adc21957SMatthew G. Knepley 9480adc21957SMatthew G. Knepley Not collective 9481adc21957SMatthew G. Knepley 9482adc21957SMatthew G. Knepley Input Parameter: 9483adc21957SMatthew G. Knepley . dm - The DM 9484adc21957SMatthew G. Knepley 9485adc21957SMatthew G. Knepley Output Parameter: 9486adc21957SMatthew G. Knepley . reorder - Flag for reordering 9487adc21957SMatthew G. Knepley 9488adc21957SMatthew G. Knepley Level: intermediate 9489adc21957SMatthew G. Knepley 9490adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9491adc21957SMatthew G. Knepley @*/ 9492adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9493adc21957SMatthew G. Knepley { 9494adc21957SMatthew G. Knepley PetscFunctionBegin; 9495adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9496adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9497adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9498adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9499adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9500adc21957SMatthew G. Knepley } 9501adc21957SMatthew G. Knepley 9502adc21957SMatthew G. Knepley /*@C 9503adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9504adc21957SMatthew G. Knepley 9505adc21957SMatthew G. Knepley Logically collective 9506adc21957SMatthew G. Knepley 9507adc21957SMatthew G. Knepley Input Parameters: 9508adc21957SMatthew G. Knepley + dm - The DM 9509adc21957SMatthew G. Knepley - reorder - The reordering method 9510adc21957SMatthew G. Knepley 9511adc21957SMatthew G. Knepley Level: intermediate 9512adc21957SMatthew G. Knepley 9513adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9514adc21957SMatthew G. Knepley @*/ 9515adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9516adc21957SMatthew G. Knepley { 9517adc21957SMatthew G. Knepley PetscFunctionBegin; 9518adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9519adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9520adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9521adc21957SMatthew G. Knepley } 9522adc21957SMatthew G. Knepley 9523adc21957SMatthew G. Knepley /*@C 9524adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9525adc21957SMatthew G. Knepley 9526adc21957SMatthew G. Knepley Not collective 9527adc21957SMatthew G. Knepley 9528adc21957SMatthew G. Knepley Input Parameter: 9529adc21957SMatthew G. Knepley . dm - The DM 9530adc21957SMatthew G. Knepley 9531adc21957SMatthew G. Knepley Output Parameter: 9532adc21957SMatthew G. Knepley . reorder - The reordering method 9533adc21957SMatthew G. Knepley 9534adc21957SMatthew G. Knepley Level: intermediate 9535adc21957SMatthew G. Knepley 9536adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9537adc21957SMatthew G. Knepley @*/ 9538adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9539adc21957SMatthew G. Knepley { 9540adc21957SMatthew G. Knepley PetscFunctionBegin; 9541adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9542adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9543adc21957SMatthew G. Knepley *reorder = NULL; 9544adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9545adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9546adc21957SMatthew G. Knepley } 9547