1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6f19dbd58SToby Isaac #include <petscdmfield.h> 70c312b8eSJed Brown #include <petscsf.h> 82764a2aaSMatthew G. Knepley #include <petscds.h> 947c6ae99SBarry Smith 10f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 11f918ec44SMatthew G. Knepley #include <petscfeceed.h> 12f918ec44SMatthew G. Knepley #endif 13f918ec44SMatthew G. Knepley 14cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 15cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1600d952a4SJed Brown #endif 1700d952a4SJed Brown 18732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 19d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 205b8ffe73SMark Adams PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator; 2167a56275SMatthew G Knepley 22ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE","GHOSTED","MIRROR","PERIODIC","TWIST","DMBoundaryType","DM_BOUNDARY_", NULL}; 23d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID","ESSENTIAL","NATURAL","INVALID","INVALID","ESSENTIAL_FIELD","NATURAL_FIELD","INVALID","INVALID","ESSENTIAL_BD_FIELD","NATURAL_RIEMANN","DMBoundaryConditionType","DM_BC_", NULL}; 24da9060c4SMatthew G. Knepley const char *const DMPolytopeTypes[] = {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", "unknown", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 252cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace","keep","fail","DMCopyLabelsMode","DM_COPY_LABELS_", NULL}; 2660c22052SBarry Smith 27a4121054SBarry Smith /*@ 28de043629SMatthew G Knepley DMCreate - Creates an empty DM object. The type can then be set with DMSetType(). 29a4121054SBarry Smith 30a4121054SBarry Smith If you never call DMSetType() it will generate an 31a4121054SBarry Smith error when you try to use the vector. 32a4121054SBarry Smith 33d083f849SBarry Smith Collective 34a4121054SBarry Smith 35a4121054SBarry Smith Input Parameter: 36a4121054SBarry Smith . comm - The communicator for the DM object 37a4121054SBarry Smith 38a4121054SBarry Smith Output Parameter: 39a4121054SBarry Smith . dm - The DM object 40a4121054SBarry Smith 41a4121054SBarry Smith Level: beginner 42a4121054SBarry Smith 43db781477SPatrick Sanan .seealso: `DMSetType()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 44a4121054SBarry Smith @*/ 457087cfbeSBarry Smith PetscErrorCode DMCreate(MPI_Comm comm,DM *dm) 46a4121054SBarry Smith { 47a4121054SBarry Smith DM v; 48e5e52638SMatthew G. Knepley PetscDS ds; 49a4121054SBarry Smith 50a4121054SBarry Smith PetscFunctionBegin; 511411c6eeSJed Brown PetscValidPointer(dm,2); 520298fd71SBarry Smith *dm = NULL; 539566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 54a4121054SBarry Smith 559566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 56e7c4fc90SDmitry Karpeev 5749be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 5849be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 590298fd71SBarry Smith v->ltogmap = NULL; 60a4ea9b21SRichard Tran Mills v->bind_below = 0; 611411c6eeSJed Brown v->bs = 1; 62171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 639566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 65c58f1c22SToby Isaac v->labels = NULL; 6634aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 6734aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 68c58f1c22SToby Isaac v->depthLabel = NULL; 69ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 701bb6d2a8SBarry Smith v->localSection = NULL; 711bb6d2a8SBarry Smith v->globalSection = NULL; 723b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 733b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 7479769bd5SJed Brown v->defaultConstraint.bias = NULL; 75*6858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 76*6858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 77*6858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 7896173672SStefano Zampini v->dim = PETSC_DETERMINE; 79435a35e8SMatthew G Knepley { 80435a35e8SMatthew G Knepley PetscInt i; 81435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 820298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 83f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 84435a35e8SMatthew G Knepley } 85435a35e8SMatthew G Knepley } 869566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 879566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(v, NULL, NULL, ds)); 889566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 899566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 9014f150ffSMatthew G. Knepley v->dmBC = NULL; 91a8fb8f29SToby Isaac v->coarseMesh = NULL; 92f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 93cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 949566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v,VECSTANDARD)); 959566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v,MATAIJ)); 964a7a4c06SLawrence Mitchell 971411c6eeSJed Brown *dm = v; 98a4121054SBarry Smith PetscFunctionReturn(0); 99a4121054SBarry Smith } 100a4121054SBarry Smith 10138221697SMatthew G. Knepley /*@ 10238221697SMatthew G. Knepley DMClone - Creates a DM object with the same topology as the original. 10338221697SMatthew G. Knepley 104d083f849SBarry Smith Collective 10538221697SMatthew G. Knepley 10638221697SMatthew G. Knepley Input Parameter: 10738221697SMatthew G. Knepley . dm - The original DM object 10838221697SMatthew G. Knepley 10938221697SMatthew G. Knepley Output Parameter: 11038221697SMatthew G. Knepley . newdm - The new DM object 11138221697SMatthew G. Knepley 11238221697SMatthew G. Knepley Level: beginner 11338221697SMatthew G. Knepley 1141cb8cacdSPatrick Sanan Notes: 1151cb8cacdSPatrick Sanan For some DM implementations this is a shallow clone, the result of which may share (referent counted) information with its parent. For example, 1161cb8cacdSPatrick Sanan DMClone() applied to a DMPLEX object will result in a new DMPLEX that shares the topology with the original DMPLEX. It does not 1171cb8cacdSPatrick Sanan share the PetscSection of the original DM. 1181bb6d2a8SBarry Smith 11989706ed2SPatrick Sanan The clone is considered set up iff the original is. 12089706ed2SPatrick Sanan 121db781477SPatrick Sanan .seealso: `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()` 1221bb6d2a8SBarry Smith 12338221697SMatthew G. Knepley @*/ 12438221697SMatthew G. Knepley PetscErrorCode DMClone(DM dm, DM *newdm) 12538221697SMatthew G. Knepley { 12638221697SMatthew G. Knepley PetscSF sf; 12738221697SMatthew G. Knepley Vec coords; 12838221697SMatthew G. Knepley void *ctx; 129*6858538eSMatthew G. Knepley PetscInt dim, cdim, i; 13038221697SMatthew G. Knepley 13138221697SMatthew G. Knepley PetscFunctionBegin; 13238221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 13338221697SMatthew G. Knepley PetscValidPointer(newdm,2); 1349566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject) dm), newdm)); 1359566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 136ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 137ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 138c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 1399566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1409566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype,(char**)&(*newdm)->vectype)); 1419566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1429566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype,(char**)&(*newdm)->mattype)); 1439566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1449566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 1451baa6e33SBarry Smith if (dm->ops->clone) PetscCall((*dm->ops->clone)(dm, newdm)); 1463f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1479566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1489566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1499566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1509566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 151*6858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 152*6858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 153be4c1c3eSMatthew G. Knepley DM ncdm; 154be4c1c3eSMatthew G. Knepley PetscSection cs; 1555a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 156be4c1c3eSMatthew G. Knepley 157*6858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1589566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 1599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject) dm))); 1605a0206caSToby Isaac if (pEndMax >= 0) { 161*6858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 162*6858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1639566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 164*6858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 165*6858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1669566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 167be4c1c3eSMatthew G. Knepley } 168be4c1c3eSMatthew G. Knepley } 169*6858538eSMatthew G. Knepley } 1709566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1719566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1729566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 17338221697SMatthew G. Knepley if (coords) { 1749566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 17538221697SMatthew G. Knepley } else { 1769566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1779566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 17838221697SMatthew G. Knepley } 179*6858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 180*6858538eSMatthew G. Knepley if (coords) { 181*6858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 182*6858538eSMatthew G. Knepley } else { 183*6858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 184*6858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 185*6858538eSMatthew G. Knepley } 18690b157c4SStefano Zampini { 187c6b900c6SMatthew G. Knepley const PetscReal *maxCell, *L; 188*6858538eSMatthew G. Knepley 189*6858538eSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &L)); 190*6858538eSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, L)); 191c6b900c6SMatthew G. Knepley } 19234aa8a36SMatthew G. Knepley { 19334aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 19434aa8a36SMatthew G. Knepley 1959566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 1969566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 19734aa8a36SMatthew G. Knepley } 19838221697SMatthew G. Knepley PetscFunctionReturn(0); 19938221697SMatthew G. Knepley } 20038221697SMatthew G. Knepley 2019a42bb27SBarry Smith /*@C 202564755cdSBarry Smith DMSetVecType - Sets the type of vector created with DMCreateLocalVector() and DMCreateGlobalVector() 2039a42bb27SBarry Smith 204d083f849SBarry Smith Logically Collective on da 2059a42bb27SBarry Smith 206147403d9SBarry Smith Input Parameters: 2079a42bb27SBarry Smith + da - initial distributed array 208147403d9SBarry Smith - ctype - the vector type, currently either VECSTANDARD, VECCUDA, or VECVIENNACL 2099a42bb27SBarry Smith 2109a42bb27SBarry Smith Options Database: 211147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2129a42bb27SBarry Smith 2139a42bb27SBarry Smith Level: intermediate 2149a42bb27SBarry Smith 215db781477SPatrick Sanan .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()` 2169a42bb27SBarry Smith @*/ 21719fd82e9SBarry Smith PetscErrorCode DMSetVecType(DM da,VecType ctype) 2189a42bb27SBarry Smith { 2199a42bb27SBarry Smith PetscFunctionBegin; 2209a42bb27SBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 2219566063dSJacob Faibussowitsch PetscCall(PetscFree(da->vectype)); 2229566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype,(char**)&da->vectype)); 2239a42bb27SBarry Smith PetscFunctionReturn(0); 2249a42bb27SBarry Smith } 2259a42bb27SBarry Smith 226c0dedaeaSBarry Smith /*@C 227c0dedaeaSBarry Smith DMGetVecType - Gets the type of vector created with DMCreateLocalVector() and DMCreateGlobalVector() 228c0dedaeaSBarry Smith 229d083f849SBarry Smith Logically Collective on da 230c0dedaeaSBarry Smith 231c0dedaeaSBarry Smith Input Parameter: 232c0dedaeaSBarry Smith . da - initial distributed array 233c0dedaeaSBarry Smith 234c0dedaeaSBarry Smith Output Parameter: 235c0dedaeaSBarry Smith . ctype - the vector type 236c0dedaeaSBarry Smith 237c0dedaeaSBarry Smith Level: intermediate 238c0dedaeaSBarry Smith 239db781477SPatrick Sanan .seealso: `DMCreate()`, `DMDestroy()`, `DM`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 240c0dedaeaSBarry Smith @*/ 241c0dedaeaSBarry Smith PetscErrorCode DMGetVecType(DM da,VecType *ctype) 242c0dedaeaSBarry Smith { 243c0dedaeaSBarry Smith PetscFunctionBegin; 244c0dedaeaSBarry Smith PetscValidHeaderSpecific(da,DM_CLASSID,1); 245c0dedaeaSBarry Smith *ctype = da->vectype; 246c0dedaeaSBarry Smith PetscFunctionReturn(0); 247c0dedaeaSBarry Smith } 248c0dedaeaSBarry Smith 2495f1ad066SMatthew G Knepley /*@ 25034f98d34SBarry Smith VecGetDM - Gets the DM defining the data layout of the vector 2515f1ad066SMatthew G Knepley 2525f1ad066SMatthew G Knepley Not collective 2535f1ad066SMatthew G Knepley 2545f1ad066SMatthew G Knepley Input Parameter: 2555f1ad066SMatthew G Knepley . v - The Vec 2565f1ad066SMatthew G Knepley 2575f1ad066SMatthew G Knepley Output Parameter: 2585f1ad066SMatthew G Knepley . dm - The DM 2595f1ad066SMatthew G Knepley 2605f1ad066SMatthew G Knepley Level: intermediate 2615f1ad066SMatthew G Knepley 262db781477SPatrick Sanan .seealso: `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2635f1ad066SMatthew G Knepley @*/ 2645f1ad066SMatthew G Knepley PetscErrorCode VecGetDM(Vec v, DM *dm) 2655f1ad066SMatthew G Knepley { 2665f1ad066SMatthew G Knepley PetscFunctionBegin; 2675f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v,VEC_CLASSID,1); 2685f1ad066SMatthew G Knepley PetscValidPointer(dm,2); 2699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) v, "__PETSc_dm", (PetscObject*) dm)); 2705f1ad066SMatthew G Knepley PetscFunctionReturn(0); 2715f1ad066SMatthew G Knepley } 2725f1ad066SMatthew G Knepley 2735f1ad066SMatthew G Knepley /*@ 274d9805387SMatthew G. Knepley VecSetDM - Sets the DM defining the data layout of the vector. 2755f1ad066SMatthew G Knepley 2765f1ad066SMatthew G Knepley Not collective 2775f1ad066SMatthew G Knepley 2785f1ad066SMatthew G Knepley Input Parameters: 2795f1ad066SMatthew G Knepley + v - The Vec 2805f1ad066SMatthew G Knepley - dm - The DM 2815f1ad066SMatthew G Knepley 282d9805387SMatthew G. Knepley Note: This is NOT the same as DMCreateGlobalVector() since it does not change the view methods or perform other customization, but merely sets the DM member. 283d9805387SMatthew G. Knepley 2845f1ad066SMatthew G Knepley Level: intermediate 2855f1ad066SMatthew G Knepley 286db781477SPatrick Sanan .seealso: `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2875f1ad066SMatthew G Knepley @*/ 2885f1ad066SMatthew G Knepley PetscErrorCode VecSetDM(Vec v, DM dm) 2895f1ad066SMatthew G Knepley { 2905f1ad066SMatthew G Knepley PetscFunctionBegin; 2915f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v,VEC_CLASSID,1); 292d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm,DM_CLASSID,2); 2939566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) v, "__PETSc_dm", (PetscObject) dm)); 2945f1ad066SMatthew G Knepley PetscFunctionReturn(0); 2955f1ad066SMatthew G Knepley } 2965f1ad066SMatthew G Knepley 297521d9a4cSLisandro Dalcin /*@C 2988f1509bcSBarry Smith DMSetISColoringType - Sets the type of coloring, global or local, that is created by the DM 2998f1509bcSBarry Smith 300d083f849SBarry Smith Logically Collective on dm 3018f1509bcSBarry Smith 3028f1509bcSBarry Smith Input Parameters: 3038f1509bcSBarry Smith + dm - the DM context 3048f1509bcSBarry Smith - ctype - the matrix type 3058f1509bcSBarry Smith 3068f1509bcSBarry Smith Options Database: 3078f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3088f1509bcSBarry Smith 3098f1509bcSBarry Smith Level: intermediate 3108f1509bcSBarry Smith 311db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 312db781477SPatrick Sanan `DMGetISColoringType()` 3138f1509bcSBarry Smith @*/ 3148f1509bcSBarry Smith PetscErrorCode DMSetISColoringType(DM dm,ISColoringType ctype) 3158f1509bcSBarry Smith { 3168f1509bcSBarry Smith PetscFunctionBegin; 3178f1509bcSBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3188f1509bcSBarry Smith dm->coloringtype = ctype; 3198f1509bcSBarry Smith PetscFunctionReturn(0); 3208f1509bcSBarry Smith } 3218f1509bcSBarry Smith 3228f1509bcSBarry Smith /*@C 3238f1509bcSBarry Smith DMGetISColoringType - Gets the type of coloring, global or local, that is created by the DM 324521d9a4cSLisandro Dalcin 325d083f849SBarry Smith Logically Collective on dm 326521d9a4cSLisandro Dalcin 327521d9a4cSLisandro Dalcin Input Parameter: 3288f1509bcSBarry Smith . dm - the DM context 3298f1509bcSBarry Smith 3308f1509bcSBarry Smith Output Parameter: 3318f1509bcSBarry Smith . ctype - the matrix type 3328f1509bcSBarry Smith 3338f1509bcSBarry Smith Options Database: 3348f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3358f1509bcSBarry Smith 3368f1509bcSBarry Smith Level: intermediate 3378f1509bcSBarry Smith 338db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 339db781477SPatrick Sanan `DMGetISColoringType()` 3408f1509bcSBarry Smith @*/ 3418f1509bcSBarry Smith PetscErrorCode DMGetISColoringType(DM dm,ISColoringType *ctype) 3428f1509bcSBarry Smith { 3438f1509bcSBarry Smith PetscFunctionBegin; 3448f1509bcSBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3458f1509bcSBarry Smith *ctype = dm->coloringtype; 3468f1509bcSBarry Smith PetscFunctionReturn(0); 3478f1509bcSBarry Smith } 3488f1509bcSBarry Smith 3498f1509bcSBarry Smith /*@C 3508f1509bcSBarry Smith DMSetMatType - Sets the type of matrix created with DMCreateMatrix() 3518f1509bcSBarry Smith 352d083f849SBarry Smith Logically Collective on dm 3538f1509bcSBarry Smith 3548f1509bcSBarry Smith Input Parameters: 355521d9a4cSLisandro Dalcin + dm - the DM context 356a2b5a043SBarry Smith - ctype - the matrix type 357521d9a4cSLisandro Dalcin 358521d9a4cSLisandro Dalcin Options Database: 359147403d9SBarry Smith . -dm_mat_type ctype - the type of the matrix to create 360521d9a4cSLisandro Dalcin 361521d9a4cSLisandro Dalcin Level: intermediate 362521d9a4cSLisandro Dalcin 363db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, `DMSetMatType()`, `DMGetMatType()` 364521d9a4cSLisandro Dalcin @*/ 36519fd82e9SBarry Smith PetscErrorCode DMSetMatType(DM dm,MatType ctype) 366521d9a4cSLisandro Dalcin { 367521d9a4cSLisandro Dalcin PetscFunctionBegin; 368521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3699566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->mattype)); 3709566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype,(char**)&dm->mattype)); 371521d9a4cSLisandro Dalcin PetscFunctionReturn(0); 372521d9a4cSLisandro Dalcin } 373521d9a4cSLisandro Dalcin 374c0dedaeaSBarry Smith /*@C 375c0dedaeaSBarry Smith DMGetMatType - Gets the type of matrix created with DMCreateMatrix() 376c0dedaeaSBarry Smith 377d083f849SBarry Smith Logically Collective on dm 378c0dedaeaSBarry Smith 379c0dedaeaSBarry Smith Input Parameter: 380c0dedaeaSBarry Smith . dm - the DM context 381c0dedaeaSBarry Smith 382c0dedaeaSBarry Smith Output Parameter: 383c0dedaeaSBarry Smith . ctype - the matrix type 384c0dedaeaSBarry Smith 385c0dedaeaSBarry Smith Options Database: 386147403d9SBarry Smith . -dm_mat_type ctype - the matrix type 387c0dedaeaSBarry Smith 388c0dedaeaSBarry Smith Level: intermediate 389c0dedaeaSBarry Smith 390db781477SPatrick Sanan .seealso: `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()`, `DMSetMatType()`, `DMGetMatType()` 391c0dedaeaSBarry Smith @*/ 392c0dedaeaSBarry Smith PetscErrorCode DMGetMatType(DM dm,MatType *ctype) 393c0dedaeaSBarry Smith { 394c0dedaeaSBarry Smith PetscFunctionBegin; 395c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 396c0dedaeaSBarry Smith *ctype = dm->mattype; 397c0dedaeaSBarry Smith PetscFunctionReturn(0); 398c0dedaeaSBarry Smith } 399c0dedaeaSBarry Smith 400c688c046SMatthew G Knepley /*@ 40134f98d34SBarry Smith MatGetDM - Gets the DM defining the data layout of the matrix 402c688c046SMatthew G Knepley 403c688c046SMatthew G Knepley Not collective 404c688c046SMatthew G Knepley 405c688c046SMatthew G Knepley Input Parameter: 406c688c046SMatthew G Knepley . A - The Mat 407c688c046SMatthew G Knepley 408c688c046SMatthew G Knepley Output Parameter: 409c688c046SMatthew G Knepley . dm - The DM 410c688c046SMatthew G Knepley 411c688c046SMatthew G Knepley Level: intermediate 412c688c046SMatthew G Knepley 4138f1509bcSBarry Smith Developer Note: Since the Mat class doesn't know about the DM class the DM object is associated with 4148f1509bcSBarry Smith the Mat through a PetscObjectCompose() operation 4158f1509bcSBarry Smith 416db781477SPatrick Sanan .seealso: `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 417c688c046SMatthew G Knepley @*/ 418c688c046SMatthew G Knepley PetscErrorCode MatGetDM(Mat A, DM *dm) 419c688c046SMatthew G Knepley { 420c688c046SMatthew G Knepley PetscFunctionBegin; 421c688c046SMatthew G Knepley PetscValidHeaderSpecific(A,MAT_CLASSID,1); 422c688c046SMatthew G Knepley PetscValidPointer(dm,2); 4239566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) A, "__PETSc_dm", (PetscObject*) dm)); 424c688c046SMatthew G Knepley PetscFunctionReturn(0); 425c688c046SMatthew G Knepley } 426c688c046SMatthew G Knepley 427c688c046SMatthew G Knepley /*@ 428c688c046SMatthew G Knepley MatSetDM - Sets the DM defining the data layout of the matrix 429c688c046SMatthew G Knepley 430c688c046SMatthew G Knepley Not collective 431c688c046SMatthew G Knepley 432c688c046SMatthew G Knepley Input Parameters: 433c688c046SMatthew G Knepley + A - The Mat 434c688c046SMatthew G Knepley - dm - The DM 435c688c046SMatthew G Knepley 436c688c046SMatthew G Knepley Level: intermediate 437c688c046SMatthew G Knepley 4388f1509bcSBarry Smith Developer Note: Since the Mat class doesn't know about the DM class the DM object is associated with 4398f1509bcSBarry Smith the Mat through a PetscObjectCompose() operation 4408f1509bcSBarry Smith 441db781477SPatrick Sanan .seealso: `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 442c688c046SMatthew G Knepley @*/ 443c688c046SMatthew G Knepley PetscErrorCode MatSetDM(Mat A, DM dm) 444c688c046SMatthew G Knepley { 445c688c046SMatthew G Knepley PetscFunctionBegin; 446c688c046SMatthew G Knepley PetscValidHeaderSpecific(A,MAT_CLASSID,1); 4478865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm,DM_CLASSID,2); 4489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject) A, "__PETSc_dm", (PetscObject) dm)); 449c688c046SMatthew G Knepley PetscFunctionReturn(0); 450c688c046SMatthew G Knepley } 451c688c046SMatthew G Knepley 4529a42bb27SBarry Smith /*@C 4539a42bb27SBarry Smith DMSetOptionsPrefix - Sets the prefix used for searching for all 4546757b960SDave May DM options in the database. 4559a42bb27SBarry Smith 456d083f849SBarry Smith Logically Collective on dm 4579a42bb27SBarry Smith 458d8d19677SJose E. Roman Input Parameters: 4598353ddbbSDave May + da - the DM context 4609a42bb27SBarry Smith - prefix - the prefix to prepend to all option names 4619a42bb27SBarry Smith 4629a42bb27SBarry Smith Notes: 4639a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 4649a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 4659a42bb27SBarry Smith 4669a42bb27SBarry Smith Level: advanced 4679a42bb27SBarry Smith 468db781477SPatrick Sanan .seealso: `DMSetFromOptions()` 4699a42bb27SBarry Smith @*/ 4707087cfbeSBarry Smith PetscErrorCode DMSetOptionsPrefix(DM dm,const char prefix[]) 4719a42bb27SBarry Smith { 4729a42bb27SBarry Smith PetscFunctionBegin; 4739a42bb27SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 4749566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm,prefix)); 4751baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf,prefix)); 4761baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF,prefix)); 4779a42bb27SBarry Smith PetscFunctionReturn(0); 4789a42bb27SBarry Smith } 4799a42bb27SBarry Smith 48031697293SDave May /*@C 48131697293SDave May DMAppendOptionsPrefix - Appends to the prefix used for searching for all 48231697293SDave May DM options in the database. 48331697293SDave May 484d083f849SBarry Smith Logically Collective on dm 48531697293SDave May 48631697293SDave May Input Parameters: 48731697293SDave May + dm - the DM context 48831697293SDave May - prefix - the prefix string to prepend to all DM option requests 48931697293SDave May 49031697293SDave May Notes: 49131697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 49231697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 49331697293SDave May 49431697293SDave May Level: advanced 49531697293SDave May 496db781477SPatrick Sanan .seealso: `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()` 49731697293SDave May @*/ 49831697293SDave May PetscErrorCode DMAppendOptionsPrefix(DM dm,const char prefix[]) 49931697293SDave May { 50031697293SDave May PetscFunctionBegin; 50131697293SDave May PetscValidHeaderSpecific(dm,DM_CLASSID,1); 5029566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm,prefix)); 50331697293SDave May PetscFunctionReturn(0); 50431697293SDave May } 50531697293SDave May 50631697293SDave May /*@C 50731697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 50831697293SDave May DM options in the database. 50931697293SDave May 51031697293SDave May Not Collective 51131697293SDave May 51231697293SDave May Input Parameters: 51331697293SDave May . dm - the DM context 51431697293SDave May 51531697293SDave May Output Parameters: 51631697293SDave May . prefix - pointer to the prefix string used is returned 51731697293SDave May 51895452b02SPatrick Sanan Notes: 51995452b02SPatrick Sanan On the fortran side, the user should pass in a string 'prefix' of 52031697293SDave May sufficient length to hold the prefix. 52131697293SDave May 52231697293SDave May Level: advanced 52331697293SDave May 524db781477SPatrick Sanan .seealso: `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()` 52531697293SDave May @*/ 52631697293SDave May PetscErrorCode DMGetOptionsPrefix(DM dm,const char *prefix[]) 52731697293SDave May { 52831697293SDave May PetscFunctionBegin; 52931697293SDave May PetscValidHeaderSpecific(dm,DM_CLASSID,1); 5309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm,prefix)); 53131697293SDave May PetscFunctionReturn(0); 53231697293SDave May } 53331697293SDave May 53488bdff64SToby Isaac static PetscErrorCode DMCountNonCyclicReferences(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 53588bdff64SToby Isaac { 5366eb26441SStefano Zampini PetscInt refct = ((PetscObject) dm)->refct; 53788bdff64SToby Isaac 53888bdff64SToby Isaac PetscFunctionBegin; 539aab5bcd8SJed Brown *ncrefct = 0; 54088bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 54188bdff64SToby Isaac refct--; 54288bdff64SToby Isaac if (recurseCoarse) { 54388bdff64SToby Isaac PetscInt coarseCount; 54488bdff64SToby Isaac 5459566063dSJacob Faibussowitsch PetscCall(DMCountNonCyclicReferences(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE,&coarseCount)); 54688bdff64SToby Isaac refct += coarseCount; 54788bdff64SToby Isaac } 54888bdff64SToby Isaac } 54988bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 55088bdff64SToby Isaac refct--; 55188bdff64SToby Isaac if (recurseFine) { 55288bdff64SToby Isaac PetscInt fineCount; 55388bdff64SToby Isaac 5549566063dSJacob Faibussowitsch PetscCall(DMCountNonCyclicReferences(dm->fineMesh, PETSC_FALSE, PETSC_TRUE,&fineCount)); 55588bdff64SToby Isaac refct += fineCount; 55688bdff64SToby Isaac } 55788bdff64SToby Isaac } 55888bdff64SToby Isaac *ncrefct = refct; 55988bdff64SToby Isaac PetscFunctionReturn(0); 56088bdff64SToby Isaac } 56188bdff64SToby Isaac 562f4cdcedcSVaclav Hapla PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 563354557abSToby Isaac { 5645d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 565354557abSToby Isaac 566354557abSToby Isaac PetscFunctionBegin; 567354557abSToby Isaac /* destroy the labels */ 568354557abSToby Isaac while (next) { 569354557abSToby Isaac DMLabelLink tmp = next->next; 570354557abSToby Isaac 5715d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 572ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 5739566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 5749566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 575354557abSToby Isaac next = tmp; 576354557abSToby Isaac } 5775d80c0bfSVaclav Hapla dm->labels = NULL; 578354557abSToby Isaac PetscFunctionReturn(0); 579354557abSToby Isaac } 580354557abSToby Isaac 581*6858538eSMatthew G. Knepley PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 582*6858538eSMatthew G. Knepley { 583*6858538eSMatthew G. Knepley PetscFunctionBegin; 584*6858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 585*6858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 586*6858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 587*6858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 588*6858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 589*6858538eSMatthew G. Knepley PetscFunctionReturn(0); 590*6858538eSMatthew G. Knepley } 591*6858538eSMatthew G. Knepley 5921fb7b255SJunchao Zhang /*@C 5938472ad0fSDave May DMDestroy - Destroys a vector packer or DM. 59447c6ae99SBarry Smith 595d083f849SBarry Smith Collective on dm 59647c6ae99SBarry Smith 59747c6ae99SBarry Smith Input Parameter: 59847c6ae99SBarry Smith . dm - the DM object to destroy 59947c6ae99SBarry Smith 60047c6ae99SBarry Smith Level: developer 60147c6ae99SBarry Smith 602db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 60347c6ae99SBarry Smith 60447c6ae99SBarry Smith @*/ 605fcfd50ebSBarry Smith PetscErrorCode DMDestroy(DM *dm) 60647c6ae99SBarry Smith { 6076eb26441SStefano Zampini PetscInt cnt; 608dfe15315SJed Brown DMNamedVecLink nlink,nnext; 60947c6ae99SBarry Smith 61047c6ae99SBarry Smith PetscFunctionBegin; 6116bf464f9SBarry Smith if (!*dm) PetscFunctionReturn(0); 6126bf464f9SBarry Smith PetscValidHeaderSpecific((*dm),DM_CLASSID,1); 61387e657c6SBarry Smith 61488bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 6159566063dSJacob Faibussowitsch PetscCall(DMCountNonCyclicReferences(*dm,PETSC_TRUE,PETSC_TRUE,&cnt)); 61688bdff64SToby Isaac --((PetscObject)(*dm))->refct; 617ea78f98cSLisandro Dalcin if (--cnt > 0) {*dm = NULL; PetscFunctionReturn(0);} 6186bf464f9SBarry Smith if (((PetscObject)(*dm))->refct < 0) PetscFunctionReturn(0); 6196bf464f9SBarry Smith ((PetscObject)(*dm))->refct = 0; 6206eb26441SStefano Zampini 6219566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6229566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 6236eb26441SStefano Zampini 624f490541aSPeter Brune nnext=(*dm)->namedglobal; 6250298fd71SBarry Smith (*dm)->namedglobal = NULL; 626f490541aSPeter Brune for (nlink=nnext; nlink; nlink=nnext) { /* Destroy the named vectors */ 6272348bcf4SPeter Brune nnext = nlink->next; 6287a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN,((PetscObject)*dm)->comm,PETSC_ERR_ARG_WRONGSTATE,"DM still has Vec named '%s' checked out",nlink->name); 6299566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6319566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 6322348bcf4SPeter Brune } 633f490541aSPeter Brune nnext=(*dm)->namedlocal; 6340298fd71SBarry Smith (*dm)->namedlocal = NULL; 635f490541aSPeter Brune for (nlink=nnext; nlink; nlink=nnext) { /* Destroy the named local vectors */ 636f490541aSPeter Brune nnext = nlink->next; 6377a8be351SBarry Smith PetscCheck(nlink->status == DMVEC_STATUS_IN,((PetscObject)*dm)->comm,PETSC_ERR_ARG_WRONGSTATE,"DM still has Vec named '%s' checked out",nlink->name); 6389566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink->name)); 6399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&nlink->X)); 6409566063dSJacob Faibussowitsch PetscCall(PetscFree(nlink)); 641f490541aSPeter Brune } 6422348bcf4SPeter Brune 643b17ce1afSJed Brown /* Destroy the list of hooks */ 644c833c3b5SJed Brown { 645c833c3b5SJed Brown DMCoarsenHookLink link,next; 646b17ce1afSJed Brown for (link=(*dm)->coarsenhook; link; link=next) { 647b17ce1afSJed Brown next = link->next; 6489566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 649b17ce1afSJed Brown } 6500298fd71SBarry Smith (*dm)->coarsenhook = NULL; 651c833c3b5SJed Brown } 652c833c3b5SJed Brown { 653c833c3b5SJed Brown DMRefineHookLink link,next; 654c833c3b5SJed Brown for (link=(*dm)->refinehook; link; link=next) { 655c833c3b5SJed Brown next = link->next; 6569566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 657c833c3b5SJed Brown } 6580298fd71SBarry Smith (*dm)->refinehook = NULL; 659c833c3b5SJed Brown } 660be081cd6SPeter Brune { 661be081cd6SPeter Brune DMSubDomainHookLink link,next; 662be081cd6SPeter Brune for (link=(*dm)->subdomainhook; link; link=next) { 663be081cd6SPeter Brune next = link->next; 6649566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 665be081cd6SPeter Brune } 6660298fd71SBarry Smith (*dm)->subdomainhook = NULL; 667be081cd6SPeter Brune } 668baf369e7SPeter Brune { 669baf369e7SPeter Brune DMGlobalToLocalHookLink link,next; 670baf369e7SPeter Brune for (link=(*dm)->gtolhook; link; link=next) { 671baf369e7SPeter Brune next = link->next; 6729566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 673baf369e7SPeter Brune } 6740298fd71SBarry Smith (*dm)->gtolhook = NULL; 675baf369e7SPeter Brune } 676d4d07f1eSToby Isaac { 677d4d07f1eSToby Isaac DMLocalToGlobalHookLink link,next; 678d4d07f1eSToby Isaac for (link=(*dm)->ltoghook; link; link=next) { 679d4d07f1eSToby Isaac next = link->next; 6809566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 681d4d07f1eSToby Isaac } 682d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 683d4d07f1eSToby Isaac } 684aa1993deSMatthew G Knepley /* Destroy the work arrays */ 685aa1993deSMatthew G Knepley { 686aa1993deSMatthew G Knepley DMWorkLink link,next; 6877a8be351SBarry Smith PetscCheck(!(*dm)->workout,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Work array still checked out"); 688aa1993deSMatthew G Knepley for (link=(*dm)->workin; link; link=next) { 689aa1993deSMatthew G Knepley next = link->next; 6909566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 6919566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 692aa1993deSMatthew G Knepley } 6930298fd71SBarry Smith (*dm)->workin = NULL; 694aa1993deSMatthew G Knepley } 695c58f1c22SToby Isaac /* destroy the labels */ 6969566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 697f4cdcedcSVaclav Hapla /* destroy the fields */ 6989566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 699f4cdcedcSVaclav Hapla /* destroy the boundaries */ 700e6f8dbb6SToby Isaac { 701e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 702e6f8dbb6SToby Isaac while (next) { 703e6f8dbb6SToby Isaac DMBoundary b = next; 704e6f8dbb6SToby Isaac 705e6f8dbb6SToby Isaac next = b->next; 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 707e6f8dbb6SToby Isaac } 708e6f8dbb6SToby Isaac } 709b17ce1afSJed Brown 7109566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7119566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7129566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 71352536dc3SBarry Smith 7141a266240SBarry Smith if ((*dm)->ctx && (*dm)->ctxdestroy) { 7159566063dSJacob Faibussowitsch PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7161a266240SBarry Smith } 7179566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7189566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7199566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7209566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 72188ed4aceSMatthew G Knepley 7229566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 7249566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7259566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 729736995cdSBlaise Bourdin if ((*dm)->useNatural) { 730736995cdSBlaise Bourdin if ((*dm)->sfNatural) { 7319566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 732736995cdSBlaise Bourdin } 7339566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject) (*dm)->sfMigration)); 734736995cdSBlaise Bourdin } 7359a2a23afSMatthew G. Knepley { 7369a2a23afSMatthew G. Knepley Vec *auxData; 7379a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 7389a2a23afSMatthew G. Knepley 7399566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize((*dm)->auxData, &n)); 7409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &auxData)); 7419566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetVals((*dm)->auxData, &off, auxData)); 7429566063dSJacob Faibussowitsch for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 7439566063dSJacob Faibussowitsch PetscCall(PetscFree(auxData)); 7449566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 7459a2a23afSMatthew G. Knepley } 74688bdff64SToby Isaac if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) { 7479566063dSJacob Faibussowitsch PetscCall(DMSetFineDM((*dm)->coarseMesh,NULL)); 74888bdff64SToby Isaac } 7496eb26441SStefano Zampini 7509566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 75188bdff64SToby Isaac if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) { 7529566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM((*dm)->fineMesh,NULL)); 75388bdff64SToby Isaac } 7549566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7559566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7569566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 757*6858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 758*6858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7599566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7609566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7626636e97aSMatthew G Knepley 7639566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7649566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 765e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7669566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 767732e2eb9SMatthew G Knepley 768ed3c66a1SDave May if ((*dm)->ops->destroy) { 7699566063dSJacob Faibussowitsch PetscCall((*(*dm)->ops->destroy)(*dm)); 770ed3c66a1SDave May } 7719566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 772f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7739566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7749566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 775f918ec44SMatthew G. Knepley #endif 776435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7779566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 77847c6ae99SBarry Smith PetscFunctionReturn(0); 77947c6ae99SBarry Smith } 78047c6ae99SBarry Smith 781d7bf68aeSBarry Smith /*@ 782d7bf68aeSBarry Smith DMSetUp - sets up the data structures inside a DM object 783d7bf68aeSBarry Smith 784d083f849SBarry Smith Collective on dm 785d7bf68aeSBarry Smith 786d7bf68aeSBarry Smith Input Parameter: 787d7bf68aeSBarry Smith . dm - the DM object to setup 788d7bf68aeSBarry Smith 789d7bf68aeSBarry Smith Level: developer 790d7bf68aeSBarry Smith 791db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 792d7bf68aeSBarry Smith 793d7bf68aeSBarry Smith @*/ 7947087cfbeSBarry Smith PetscErrorCode DMSetUp(DM dm) 795d7bf68aeSBarry Smith { 796d7bf68aeSBarry Smith PetscFunctionBegin; 797171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7988387afaaSJed Brown if (dm->setupcalled) PetscFunctionReturn(0); 7991baa6e33SBarry Smith if (dm->ops->setup) PetscCall((*dm->ops->setup)(dm)); 8008387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 801d7bf68aeSBarry Smith PetscFunctionReturn(0); 802d7bf68aeSBarry Smith } 803d7bf68aeSBarry Smith 804d7bf68aeSBarry Smith /*@ 805d7bf68aeSBarry Smith DMSetFromOptions - sets parameters in a DM from the options database 806d7bf68aeSBarry Smith 807d083f849SBarry Smith Collective on dm 808d7bf68aeSBarry Smith 809d7bf68aeSBarry Smith Input Parameter: 810d7bf68aeSBarry Smith . dm - the DM object to set options for 811d7bf68aeSBarry Smith 812732e2eb9SMatthew G Knepley Options Database: 8135b8ffe73SMark Adams + -dm_preallocate_only - Only preallocate the matrix for DMCreateMatrix() and DMCreateMassMatrix(), but do not fill it with zeros 8144164ae61SDominic Meiser . -dm_vec_type <type> - type of vector to create inside DM 8154164ae61SDominic Meiser . -dm_mat_type <type> - type of matrix to create inside DM 816a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 817a4ea9b21SRichard Tran Mills - -dm_bind_below <n> - bind (force execution on CPU) for Vec and Mat objects with local size (number of vector entries or matrix rows) below n; currently only supported for DMDA 818732e2eb9SMatthew G Knepley 8199318fe57SMatthew G. Knepley DMPLEX Specific creation options 8209318fe57SMatthew G. Knepley + -dm_plex_filename <str> - File containing a mesh 8219318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 822cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8239318fe57SMatthew G. Knepley . -dm_plex_shape <shape> - The domain shape, such as DM_SHAPE_BOX, DM_SHAPE_SPHERE, etc. 8249318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8259318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8269318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 8279318fe57SMatthew G. Knepley . -dm_plex_simplex <bool> - PETSC_TRUE for simplex elements, PETSC_FALSE for tensor elements 8289318fe57SMatthew G. Knepley . -dm_plex_interpolate <bool> - PETSC_TRUE turns on topological interpolation (creating edges and faces) 8299318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 8309318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8319318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8329318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 8339318fe57SMatthew G. Knepley . -dm_plex_box_bd <bx,by,bz> - Specify the DMBoundaryType for each direction 8349318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8359318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8369318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8379318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 838bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8399318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8409318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8419318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8429318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 843bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 844d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 845d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 846d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 847d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 848d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 849909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 850909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8519318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8529318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8539318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 8549318fe57SMatthew G. Knepley - -dm_plex_adj_closure <bool> - Set adjacency size 8559318fe57SMatthew G. Knepley 856384a6580SVaclav Hapla DMPLEX Specific Checks 857384a6580SVaclav Hapla + -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - DMPlexCheckSymmetry() 858384a6580SVaclav Hapla . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - DMPlexCheckSkeleton() 859384a6580SVaclav Hapla . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - DMPlexCheckFaces() 860384a6580SVaclav Hapla . -dm_plex_check_geometry - Check that cells have positive volume - DMPlexCheckGeometry() 861384a6580SVaclav Hapla . -dm_plex_check_pointsf - Check some necessary conditions for PointSF - DMPlexCheckPointSF() 862384a6580SVaclav Hapla . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - DMPlexCheckInterfaceCones() 863384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 864d7bf68aeSBarry Smith 86595eb5ee5SVaclav Hapla Level: intermediate 86695eb5ee5SVaclav Hapla 867db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 868db781477SPatrick Sanan `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()` 869d7bf68aeSBarry Smith 870d7bf68aeSBarry Smith @*/ 8717087cfbeSBarry Smith PetscErrorCode DMSetFromOptions(DM dm) 872d7bf68aeSBarry Smith { 8737781c08eSBarry Smith char typeName[256]; 874ca266f36SBarry Smith PetscBool flg; 875d7bf68aeSBarry Smith 876d7bf68aeSBarry Smith PetscFunctionBegin; 877171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 87849be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8799566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 8809566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 881d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 8829566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only","only preallocate matrix, but do not set column indices","DMSetMatrixPreallocateOnly",dm->prealloc_only,&dm->prealloc_only,NULL)); 8839566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type","Vector type used for created vectors","DMSetVecType",VecList,dm->vectype,typeName,256,&flg)); 8841baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm,typeName)); 8859566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type","Matrix type used for created matrices","DMSetMatType",MatList,dm->mattype ? dm->mattype : typeName,typeName,sizeof(typeName),&flg)); 8861baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm,typeName)); 8879566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type","Global or local coloring of Jacobian","DMSetISColoringType",ISColoringTypes,(PetscEnum)dm->coloringtype,(PetscEnum*)&dm->coloringtype,NULL)); 8889566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below","Set the size threshold (in entries) below which the Vec is bound to the CPU","VecBindToCPU",dm->bind_below,&dm->bind_below,&flg)); 8891baa6e33SBarry Smith if (dm->ops->setfromoptions) PetscCall((*dm->ops->setfromoptions)(PetscOptionsObject,dm)); 890f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 8919566063dSJacob Faibussowitsch PetscCall(PetscObjectProcessOptionsHandlers(PetscOptionsObject,(PetscObject) dm)); 892d0609cedSBarry Smith PetscOptionsEnd(); 893d7bf68aeSBarry Smith PetscFunctionReturn(0); 894d7bf68aeSBarry Smith } 895d7bf68aeSBarry Smith 896fc9bc008SSatish Balay /*@C 897fe2efc57SMark DMViewFromOptions - View from Options 898fe2efc57SMark 899fe2efc57SMark Collective on DM 900fe2efc57SMark 901fe2efc57SMark Input Parameters: 902fe2efc57SMark + dm - the DM object 903736c3998SJose E. Roman . obj - Optional object 904736c3998SJose E. Roman - name - command line option 905fe2efc57SMark 906fe2efc57SMark Level: intermediate 907db781477SPatrick Sanan .seealso: `DM`, `DMView`, `PetscObjectViewFromOptions()`, `DMCreate()` 908fe2efc57SMark @*/ 909fe2efc57SMark PetscErrorCode DMViewFromOptions(DM dm,PetscObject obj,const char name[]) 910fe2efc57SMark { 911fe2efc57SMark PetscFunctionBegin; 912fe2efc57SMark PetscValidHeaderSpecific(dm,DM_CLASSID,1); 9139566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm,obj,name)); 914fe2efc57SMark PetscFunctionReturn(0); 915fe2efc57SMark } 916fe2efc57SMark 917fe2efc57SMark /*@C 918224748a4SBarry Smith DMView - Views a DM 91947c6ae99SBarry Smith 920d083f849SBarry Smith Collective on dm 92147c6ae99SBarry Smith 922d8d19677SJose E. Roman Input Parameters: 92347c6ae99SBarry Smith + dm - the DM object to view 92447c6ae99SBarry Smith - v - the viewer 92547c6ae99SBarry Smith 926cd7e8a5eSksagiyam Notes: 927cd7e8a5eSksagiyam Using PETSCVIEWERHDF5 type with PETSC_VIEWER_HDF5_PETSC format, one can save multiple DMPlex 928cd7e8a5eSksagiyam meshes in a single HDF5 file. This in turn requires one to name the DMPlex object with PetscObjectSetName() 929cd7e8a5eSksagiyam before saving it with DMView() and before loading it with DMLoad() for identification of the mesh object. 930cd7e8a5eSksagiyam 931224748a4SBarry Smith Level: beginner 93247c6ae99SBarry Smith 933db781477SPatrick Sanan .seealso `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 93447c6ae99SBarry Smith 93547c6ae99SBarry Smith @*/ 9367087cfbeSBarry Smith PetscErrorCode DMView(DM dm,PetscViewer v) 93747c6ae99SBarry Smith { 93832c0f0efSBarry Smith PetscBool isbinary; 93976a8abe0SBarry Smith PetscMPIInt size; 94076a8abe0SBarry Smith PetscViewerFormat format; 94147c6ae99SBarry Smith 94247c6ae99SBarry Smith PetscFunctionBegin; 943171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 9443014e516SBarry Smith if (!v) { 9459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm),&v)); 9463014e516SBarry Smith } 947b1b135c8SBarry Smith PetscValidHeaderSpecific(v,PETSC_VIEWER_CLASSID,2); 94874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 94974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 95074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 95174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 95274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 95374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 95474903a4fSStefano Zampini in an error here */ 95574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9569566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 957b1b135c8SBarry Smith 9589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v,&format)); 9599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm),&size)); 96076a8abe0SBarry Smith if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(0); 9619566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm,v)); 9629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v,PETSCVIEWERBINARY,&isbinary)); 96332c0f0efSBarry Smith if (isbinary) { 96455849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 96532c0f0efSBarry Smith char type[256]; 96632c0f0efSBarry Smith 9679566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v,&classid,1,PETSC_INT)); 9689566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(type,((PetscObject)dm)->type_name,256)); 9699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v,type,256,PETSC_CHAR)); 97032c0f0efSBarry Smith } 9711baa6e33SBarry Smith if (dm->ops->view) PetscCall((*dm->ops->view)(dm,v)); 97247c6ae99SBarry Smith PetscFunctionReturn(0); 97347c6ae99SBarry Smith } 97447c6ae99SBarry Smith 97547c6ae99SBarry Smith /*@ 9768472ad0fSDave May DMCreateGlobalVector - Creates a global vector from a DM object 97747c6ae99SBarry Smith 978d083f849SBarry Smith Collective on dm 97947c6ae99SBarry Smith 98047c6ae99SBarry Smith Input Parameter: 98147c6ae99SBarry Smith . dm - the DM object 98247c6ae99SBarry Smith 98347c6ae99SBarry Smith Output Parameter: 98447c6ae99SBarry Smith . vec - the global vector 98547c6ae99SBarry Smith 986073dac72SJed Brown Level: beginner 98747c6ae99SBarry Smith 988db781477SPatrick Sanan .seealso `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 98947c6ae99SBarry Smith 99047c6ae99SBarry Smith @*/ 9917087cfbeSBarry Smith PetscErrorCode DMCreateGlobalVector(DM dm,Vec *vec) 99247c6ae99SBarry Smith { 99347c6ae99SBarry Smith PetscFunctionBegin; 994171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 995b9d85ea2SLisandro Dalcin PetscValidPointer(vec,2); 9967a8be351SBarry Smith PetscCheck(dm->ops->createglobalvector,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateGlobalVector",((PetscObject)dm)->type_name); 9979566063dSJacob Faibussowitsch PetscCall((*dm->ops->createglobalvector)(dm,vec)); 99876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 999c6b011d8SStefano Zampini DM vdm; 1000c6b011d8SStefano Zampini 10019566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec,&vdm)); 10027a8be351SBarry Smith PetscCheck(vdm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"DM type '%s' did not attach the DM to the vector",((PetscObject)dm)->type_name); 1003c6b011d8SStefano Zampini } 100447c6ae99SBarry Smith PetscFunctionReturn(0); 100547c6ae99SBarry Smith } 100647c6ae99SBarry Smith 100747c6ae99SBarry Smith /*@ 10088472ad0fSDave May DMCreateLocalVector - Creates a local vector from a DM object 100947c6ae99SBarry Smith 101047c6ae99SBarry Smith Not Collective 101147c6ae99SBarry Smith 101247c6ae99SBarry Smith Input Parameter: 101347c6ae99SBarry Smith . dm - the DM object 101447c6ae99SBarry Smith 101547c6ae99SBarry Smith Output Parameter: 101647c6ae99SBarry Smith . vec - the local vector 101747c6ae99SBarry Smith 1018073dac72SJed Brown Level: beginner 101947c6ae99SBarry Smith 1020db781477SPatrick Sanan .seealso `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 102147c6ae99SBarry Smith 102247c6ae99SBarry Smith @*/ 10237087cfbeSBarry Smith PetscErrorCode DMCreateLocalVector(DM dm,Vec *vec) 102447c6ae99SBarry Smith { 102547c6ae99SBarry Smith PetscFunctionBegin; 1026171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1027b9d85ea2SLisandro Dalcin PetscValidPointer(vec,2); 10287a8be351SBarry Smith PetscCheck(dm->ops->createlocalvector,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateLocalVector",((PetscObject)dm)->type_name); 10299566063dSJacob Faibussowitsch PetscCall((*dm->ops->createlocalvector)(dm,vec)); 103076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1031c6b011d8SStefano Zampini DM vdm; 1032c6b011d8SStefano Zampini 10339566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec,&vdm)); 10347a8be351SBarry Smith PetscCheck(vdm,PETSC_COMM_SELF,PETSC_ERR_LIB,"DM type '%s' did not attach the DM to the vector",((PetscObject)dm)->type_name); 1035c6b011d8SStefano Zampini } 103647c6ae99SBarry Smith PetscFunctionReturn(0); 103747c6ae99SBarry Smith } 103847c6ae99SBarry Smith 10391411c6eeSJed Brown /*@ 10401411c6eeSJed Brown DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a DM. 10411411c6eeSJed Brown 1042d083f849SBarry Smith Collective on dm 10431411c6eeSJed Brown 10441411c6eeSJed Brown Input Parameter: 10451411c6eeSJed Brown . dm - the DM that provides the mapping 10461411c6eeSJed Brown 10471411c6eeSJed Brown Output Parameter: 10481411c6eeSJed Brown . ltog - the mapping 10491411c6eeSJed Brown 10501411c6eeSJed Brown Level: intermediate 10511411c6eeSJed Brown 10521411c6eeSJed Brown Notes: 10531411c6eeSJed Brown This mapping can then be used by VecSetLocalToGlobalMapping() or 10541411c6eeSJed Brown MatSetLocalToGlobalMapping(). 10551411c6eeSJed Brown 1056db781477SPatrick Sanan .seealso: `DMCreateLocalVector()` 10571411c6eeSJed Brown @*/ 10587087cfbeSBarry Smith PetscErrorCode DMGetLocalToGlobalMapping(DM dm,ISLocalToGlobalMapping *ltog) 10591411c6eeSJed Brown { 10600be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10611411c6eeSJed Brown 10621411c6eeSJed Brown PetscFunctionBegin; 10631411c6eeSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 10641411c6eeSJed Brown PetscValidPointer(ltog,2); 10651411c6eeSJed Brown if (!dm->ltogmap) { 106637d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 106737d0c07bSMatthew G Knepley 10689566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 106937d0c07bSMatthew G Knepley if (section) { 1070a974ec88SMatthew G. Knepley const PetscInt *cdofs; 107137d0c07bSMatthew G Knepley PetscInt *ltog; 1072ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 107337d0c07bSMatthew G Knepley 10749566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 10759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 10769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 10779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 107837d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1079e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 108037d0c07bSMatthew G Knepley 108137d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 10829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 10839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 10849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 10859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 10861a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 10871a7dc684SMatthew G. Knepley bdof = cdof && (dof-cdof) ? 1 : dof; 10881a7dc684SMatthew G. Knepley if (dof) { 10895b8243e1SJed Brown bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 10901a7dc684SMatthew G. Knepley } 10915227eafbSStefano Zampini 1092e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 10935227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1094e6befd46SJed Brown ltog[l] = off < 0 ? off-c : -(off+c+1); 1095e6befd46SJed Brown cind++; 1096e6befd46SJed Brown } else { 10975227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off+1) : off) + c - cind; 1098e6befd46SJed Brown } 109937d0c07bSMatthew G Knepley } 110037d0c07bSMatthew G Knepley } 1101bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11020be3e97aSMatthew G. Knepley bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; bsLocal[1] = bs; 11039566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject) dm), bsLocal, bsMinMax)); 11040be3e97aSMatthew G. Knepley if (bsMinMax[0] != bsMinMax[1]) {bs = 1;} 11050be3e97aSMatthew G. Knepley else {bs = bsMinMax[0];} 11067591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11077591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1108ccf3bd66SMatthew G. Knepley if (bs > 1) { 1109ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1110ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1111ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l]/bs : -(-(ltog[l]+1)/bs + 1); 1112ca469d19SJed Brown } 1113ccf3bd66SMatthew G. Knepley n /= bs; 1114ccf3bd66SMatthew G. Knepley } 11159566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 11169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)dm, (PetscObject)dm->ltogmap)); 111737d0c07bSMatthew G Knepley } else { 11187a8be351SBarry Smith PetscCheck(dm->ops->getlocaltoglobalmapping,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMGetLocalToGlobalMapping",((PetscObject)dm)->type_name); 11199566063dSJacob Faibussowitsch PetscCall((*dm->ops->getlocaltoglobalmapping)(dm)); 11201411c6eeSJed Brown } 112137d0c07bSMatthew G Knepley } 11221411c6eeSJed Brown *ltog = dm->ltogmap; 11231411c6eeSJed Brown PetscFunctionReturn(0); 11241411c6eeSJed Brown } 11251411c6eeSJed Brown 11261411c6eeSJed Brown /*@ 11271411c6eeSJed Brown DMGetBlockSize - Gets the inherent block size associated with a DM 11281411c6eeSJed Brown 11291411c6eeSJed Brown Not Collective 11301411c6eeSJed Brown 11311411c6eeSJed Brown Input Parameter: 11321411c6eeSJed Brown . dm - the DM with block structure 11331411c6eeSJed Brown 11341411c6eeSJed Brown Output Parameter: 11351411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11361411c6eeSJed Brown 11371411c6eeSJed Brown Level: intermediate 11381411c6eeSJed Brown 1139db781477SPatrick Sanan .seealso: `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11401411c6eeSJed Brown @*/ 11417087cfbeSBarry Smith PetscErrorCode DMGetBlockSize(DM dm,PetscInt *bs) 11421411c6eeSJed Brown { 11431411c6eeSJed Brown PetscFunctionBegin; 11441411c6eeSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1145534a8f05SLisandro Dalcin PetscValidIntPointer(bs,2); 11467a8be351SBarry Smith PetscCheck(dm->bs >= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"DM does not have enough information to provide a block size yet"); 11471411c6eeSJed Brown *bs = dm->bs; 11481411c6eeSJed Brown PetscFunctionReturn(0); 11491411c6eeSJed Brown } 11501411c6eeSJed Brown 115148eeb7c8SBarry Smith /*@C 11528472ad0fSDave May DMCreateInterpolation - Gets interpolation matrix between two DM objects 115347c6ae99SBarry Smith 1154a5bc1bf3SBarry Smith Collective on dmc 115547c6ae99SBarry Smith 1156d8d19677SJose E. Roman Input Parameters: 1157a5bc1bf3SBarry Smith + dmc - the DM object 1158a5bc1bf3SBarry Smith - dmf - the second, finer DM object 115947c6ae99SBarry Smith 1160d8d19677SJose E. Roman Output Parameters: 116147c6ae99SBarry Smith + mat - the interpolation 116247c6ae99SBarry Smith - vec - the scaling (optional) 116347c6ae99SBarry Smith 116447c6ae99SBarry Smith Level: developer 116547c6ae99SBarry Smith 116695452b02SPatrick Sanan Notes: 116795452b02SPatrick Sanan For DMDA objects this only works for "uniform refinement", that is the refined mesh was obtained DMRefine() or the coarse mesh was obtained by 116885afcc9aSBarry Smith DMCoarsen(). The coordinates set into the DMDA are completely ignored in computing the interpolation. 1169d52bd9f3SBarry Smith 11701f588964SMatthew G Knepley For DMDA objects you can use this interpolation (more precisely the interpolation from the DMGetCoordinateDM()) to interpolate the mesh coordinate vectors 1171d52bd9f3SBarry Smith EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 117285afcc9aSBarry Smith 1173db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 117447c6ae99SBarry Smith 117547c6ae99SBarry Smith @*/ 1176a5bc1bf3SBarry Smith PetscErrorCode DMCreateInterpolation(DM dmc,DM dmf,Mat *mat,Vec *vec) 117747c6ae99SBarry Smith { 117847c6ae99SBarry Smith PetscFunctionBegin; 1179a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 1180a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf,DM_CLASSID,2); 1181c7d20fa0SStefano Zampini PetscValidPointer(mat,3); 11827a8be351SBarry Smith PetscCheck(dmc->ops->createinterpolation,PetscObjectComm((PetscObject)dmc),PETSC_ERR_SUP,"DM type %s does not implement DMCreateInterpolation",((PetscObject)dmc)->type_name); 11839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation,dmc,dmf,0,0)); 11849566063dSJacob Faibussowitsch PetscCall((*dmc->ops->createinterpolation)(dmc,dmf,mat,vec)); 11859566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation,dmc,dmf,0,0)); 118647c6ae99SBarry Smith PetscFunctionReturn(0); 118747c6ae99SBarry Smith } 118847c6ae99SBarry Smith 11893ad4599aSBarry Smith /*@ 1190d3e313eaSPatrick Sanan DMCreateInterpolationScale - Forms L = 1/(R*1) such that diag(L)*R preserves scale and is thus suitable for state (versus residual) restriction. 11912ed6491fSPatrick Sanan 11922ed6491fSPatrick Sanan Input Parameters: 11932ed6491fSPatrick Sanan + dac - DM that defines a coarse mesh 11942ed6491fSPatrick Sanan . daf - DM that defines a fine mesh 11952ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 11962ed6491fSPatrick Sanan 11972ed6491fSPatrick Sanan Output Parameter: 11982ed6491fSPatrick Sanan . scale - the scaled vector 11992ed6491fSPatrick Sanan 12002ed6491fSPatrick Sanan Level: developer 12012ed6491fSPatrick Sanan 1202e9c74fd6SRichard Tran Mills Developer Notes: 1203e9c74fd6SRichard Tran Mills If the fine-scale DMDA has the -dm_bind_below option set to true, then DMCreateInterpolationScale() calls MatSetBindingPropagates() 1204e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1205e9c74fd6SRichard Tran Mills 1206db781477SPatrick Sanan .seealso: `DMCreateInterpolation()` 12072ed6491fSPatrick Sanan 12082ed6491fSPatrick Sanan @*/ 12092ed6491fSPatrick Sanan PetscErrorCode DMCreateInterpolationScale(DM dac,DM daf,Mat mat,Vec *scale) 12102ed6491fSPatrick Sanan { 12112ed6491fSPatrick Sanan Vec fine; 12122ed6491fSPatrick Sanan PetscScalar one = 1.0; 12139704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1214e9c74fd6SRichard Tran Mills PetscBool bindingpropagates,isbound; 12159704db99SRichard Tran Mills #endif 12162ed6491fSPatrick Sanan 12172ed6491fSPatrick Sanan PetscFunctionBegin; 12189566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf,&fine)); 12199566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac,scale)); 12209566063dSJacob Faibussowitsch PetscCall(VecSet(fine,one)); 12219704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12229704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12239704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12249704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12259566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine,&bindingpropagates)); 1226e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12279566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat,PETSC_TRUE)); 12289566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine,&isbound)); 12299566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat,isbound)); 123083aa49f4SRichard Tran Mills } 12319704db99SRichard Tran Mills #endif 12329566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat,fine,*scale)); 12339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12349566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12352ed6491fSPatrick Sanan PetscFunctionReturn(0); 12362ed6491fSPatrick Sanan } 12372ed6491fSPatrick Sanan 12382ed6491fSPatrick Sanan /*@ 12393ad4599aSBarry Smith DMCreateRestriction - Gets restriction matrix between two DM objects 12403ad4599aSBarry Smith 1241a5bc1bf3SBarry Smith Collective on dmc 12423ad4599aSBarry Smith 1243d8d19677SJose E. Roman Input Parameters: 1244a5bc1bf3SBarry Smith + dmc - the DM object 1245a5bc1bf3SBarry Smith - dmf - the second, finer DM object 12463ad4599aSBarry Smith 12473ad4599aSBarry Smith Output Parameter: 12483ad4599aSBarry Smith . mat - the restriction 12493ad4599aSBarry Smith 12503ad4599aSBarry Smith Level: developer 12513ad4599aSBarry Smith 125295452b02SPatrick Sanan Notes: 125395452b02SPatrick Sanan For DMDA objects this only works for "uniform refinement", that is the refined mesh was obtained DMRefine() or the coarse mesh was obtained by 12543ad4599aSBarry Smith DMCoarsen(). The coordinates set into the DMDA are completely ignored in computing the interpolation. 12553ad4599aSBarry Smith 1256db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12573ad4599aSBarry Smith 12583ad4599aSBarry Smith @*/ 1259a5bc1bf3SBarry Smith PetscErrorCode DMCreateRestriction(DM dmc,DM dmf,Mat *mat) 12603ad4599aSBarry Smith { 12613ad4599aSBarry Smith PetscFunctionBegin; 1262a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc,DM_CLASSID,1); 1263a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf,DM_CLASSID,2); 12645a84ad33SLisandro Dalcin PetscValidPointer(mat,3); 12657a8be351SBarry Smith PetscCheck(dmc->ops->createrestriction,PetscObjectComm((PetscObject)dmc),PETSC_ERR_SUP,"DM type %s does not implement DMCreateRestriction",((PetscObject)dmc)->type_name); 12669566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction,dmc,dmf,0,0)); 12679566063dSJacob Faibussowitsch PetscCall((*dmc->ops->createrestriction)(dmc,dmf,mat)); 12689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction,dmc,dmf,0,0)); 12693ad4599aSBarry Smith PetscFunctionReturn(0); 12703ad4599aSBarry Smith } 12713ad4599aSBarry Smith 127247c6ae99SBarry Smith /*@ 12738472ad0fSDave May DMCreateInjection - Gets injection matrix between two DM objects 127447c6ae99SBarry Smith 1275a5bc1bf3SBarry Smith Collective on dac 127647c6ae99SBarry Smith 1277d8d19677SJose E. Roman Input Parameters: 1278a5bc1bf3SBarry Smith + dac - the DM object 1279a5bc1bf3SBarry Smith - daf - the second, finer DM object 128047c6ae99SBarry Smith 128147c6ae99SBarry Smith Output Parameter: 12826dbf9973SLawrence Mitchell . mat - the injection 128347c6ae99SBarry Smith 128447c6ae99SBarry Smith Level: developer 128547c6ae99SBarry Smith 128695452b02SPatrick Sanan Notes: 128795452b02SPatrick Sanan For DMDA objects this only works for "uniform refinement", that is the refined mesh was obtained DMRefine() or the coarse mesh was obtained by 128885afcc9aSBarry Smith DMCoarsen(). The coordinates set into the DMDA are completely ignored in computing the injection. 128985afcc9aSBarry Smith 1290db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()` 129147c6ae99SBarry Smith 129247c6ae99SBarry Smith @*/ 1293a5bc1bf3SBarry Smith PetscErrorCode DMCreateInjection(DM dac,DM daf,Mat *mat) 129447c6ae99SBarry Smith { 129547c6ae99SBarry Smith PetscFunctionBegin; 1296a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac,DM_CLASSID,1); 1297a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf,DM_CLASSID,2); 12985a84ad33SLisandro Dalcin PetscValidPointer(mat,3); 12997a8be351SBarry Smith PetscCheck(dac->ops->createinjection,PetscObjectComm((PetscObject)dac),PETSC_ERR_SUP,"DM type %s does not implement DMCreateInjection",((PetscObject)dac)->type_name); 13009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection,dac,daf,0,0)); 13019566063dSJacob Faibussowitsch PetscCall((*dac->ops->createinjection)(dac,daf,mat)); 13029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection,dac,daf,0,0)); 130347c6ae99SBarry Smith PetscFunctionReturn(0); 130447c6ae99SBarry Smith } 130547c6ae99SBarry Smith 1306b412c318SBarry Smith /*@ 1307bd041c0cSMatthew G. Knepley DMCreateMassMatrix - Gets mass matrix between two DM objects, M_ij = \int \phi_i \psi_j 1308bd041c0cSMatthew G. Knepley 1309a5bc1bf3SBarry Smith Collective on dac 1310bd041c0cSMatthew G. Knepley 1311d8d19677SJose E. Roman Input Parameters: 1312b4937a87SMatthew G. Knepley + dmc - the target DM object 1313b4937a87SMatthew G. Knepley - dmf - the source DM object 1314bd041c0cSMatthew G. Knepley 1315bd041c0cSMatthew G. Knepley Output Parameter: 1316b4937a87SMatthew G. Knepley . mat - the mass matrix 1317bd041c0cSMatthew G. Knepley 1318bd041c0cSMatthew G. Knepley Level: developer 1319bd041c0cSMatthew G. Knepley 1320db781477SPatrick Sanan .seealso `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1321bd041c0cSMatthew G. Knepley @*/ 1322b4937a87SMatthew G. Knepley PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1323bd041c0cSMatthew G. Knepley { 1324bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1325b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1326b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13275a84ad33SLisandro Dalcin PetscValidPointer(mat,3); 13282c71b3e2SJacob Faibussowitsch PetscCheck(dmc->ops->createmassmatrix,PetscObjectComm((PetscObject)dmc),PETSC_ERR_SUP,"DM type %s does not implement DMCreateMassMatrix",((PetscObject)dmc)->type_name); 13295b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix,0,0,0,0)); 13309566063dSJacob Faibussowitsch PetscCall((*dmc->ops->createmassmatrix)(dmc, dmf, mat)); 13315b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix,0,0,0,0)); 1332b4937a87SMatthew G. Knepley PetscFunctionReturn(0); 1333b4937a87SMatthew G. Knepley } 1334b4937a87SMatthew G. Knepley 1335b4937a87SMatthew G. Knepley /*@ 1336b4937a87SMatthew G. Knepley DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given DM 1337b4937a87SMatthew G. Knepley 1338b4937a87SMatthew G. Knepley Collective on dm 1339b4937a87SMatthew G. Knepley 1340b4937a87SMatthew G. Knepley Input Parameter: 1341b4937a87SMatthew G. Knepley . dm - the DM object 1342b4937a87SMatthew G. Knepley 1343b4937a87SMatthew G. Knepley Output Parameter: 1344b4937a87SMatthew G. Knepley . lm - the lumped mass matrix 1345b4937a87SMatthew G. Knepley 1346b4937a87SMatthew G. Knepley Level: developer 1347b4937a87SMatthew G. Knepley 1348db781477SPatrick Sanan .seealso `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1349b4937a87SMatthew G. Knepley @*/ 1350b4937a87SMatthew G. Knepley PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1351b4937a87SMatthew G. Knepley { 1352b4937a87SMatthew G. Knepley PetscFunctionBegin; 1353b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1354b4937a87SMatthew G. Knepley PetscValidPointer(lm,2); 13552c71b3e2SJacob Faibussowitsch PetscCheck(dm->ops->createmassmatrixlumped,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateMassMatrixLumped",((PetscObject)dm)->type_name); 13569566063dSJacob Faibussowitsch PetscCall((*dm->ops->createmassmatrixlumped)(dm, lm)); 1357bd041c0cSMatthew G. Knepley PetscFunctionReturn(0); 1358bd041c0cSMatthew G. Knepley } 1359bd041c0cSMatthew G. Knepley 1360bd041c0cSMatthew G. Knepley /*@ 1361b412c318SBarry Smith DMCreateColoring - Gets coloring for a DM 136247c6ae99SBarry Smith 1363d083f849SBarry Smith Collective on dm 136447c6ae99SBarry Smith 1365d8d19677SJose E. Roman Input Parameters: 136647c6ae99SBarry Smith + dm - the DM object 13675bdb020cSBarry Smith - ctype - IS_COLORING_LOCAL or IS_COLORING_GLOBAL 136847c6ae99SBarry Smith 136947c6ae99SBarry Smith Output Parameter: 137047c6ae99SBarry Smith . coloring - the coloring 137147c6ae99SBarry Smith 1372ec5066bdSBarry Smith Notes: 1373ec5066bdSBarry Smith Coloring of matrices can be computed directly from the sparse matrix nonzero structure via the MatColoring object or from the mesh from which the 1374ec5066bdSBarry Smith matrix comes from. In general using the mesh produces a more optimal coloring (fewer colors). 1375ec5066bdSBarry Smith 1376ec5066bdSBarry Smith This produces a coloring with the distance of 2, see MatSetColoringDistance() which can be used for efficiently computing Jacobians with MatFDColoringCreate() 1377ec5066bdSBarry Smith 137847c6ae99SBarry Smith Level: developer 137947c6ae99SBarry Smith 1380db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 138147c6ae99SBarry Smith 1382aab9d709SJed Brown @*/ 1383b412c318SBarry Smith PetscErrorCode DMCreateColoring(DM dm,ISColoringType ctype,ISColoring *coloring) 138447c6ae99SBarry Smith { 138547c6ae99SBarry Smith PetscFunctionBegin; 1386171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 13875a84ad33SLisandro Dalcin PetscValidPointer(coloring,3); 13887a8be351SBarry Smith PetscCheck(dm->ops->getcoloring,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateColoring",((PetscObject)dm)->type_name); 13899566063dSJacob Faibussowitsch PetscCall((*dm->ops->getcoloring)(dm,ctype,coloring)); 139047c6ae99SBarry Smith PetscFunctionReturn(0); 139147c6ae99SBarry Smith } 139247c6ae99SBarry Smith 1393b412c318SBarry Smith /*@ 13948472ad0fSDave May DMCreateMatrix - Gets empty Jacobian for a DM 139547c6ae99SBarry Smith 1396d083f849SBarry Smith Collective on dm 139747c6ae99SBarry Smith 139847c6ae99SBarry Smith Input Parameter: 1399b412c318SBarry Smith . dm - the DM object 140047c6ae99SBarry Smith 140147c6ae99SBarry Smith Output Parameter: 140247c6ae99SBarry Smith . mat - the empty Jacobian 140347c6ae99SBarry Smith 1404073dac72SJed Brown Level: beginner 140547c6ae99SBarry Smith 1406f27dd7c6SMatthew G. Knepley Options Database Keys: 14075b8ffe73SMark Adams . -dm_preallocate_only - Only preallocate the matrix for DMCreateMatrix() and DMCreateMassMatrix(), but do not fill it with zeros 1408f27dd7c6SMatthew G. Knepley 140995452b02SPatrick Sanan Notes: 141095452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 141194013140SBarry Smith do not need to do it yourself. 141294013140SBarry Smith 141394013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 14147889ec69SBarry Smith the nonzero pattern call DMSetMatrixPreallocateOnly() 141594013140SBarry Smith 141694013140SBarry Smith For structured grid problems, when you call MatView() on this matrix it is displayed using the global natural ordering, NOT in the ordering used 141794013140SBarry Smith internally by PETSc. 141894013140SBarry Smith 141994013140SBarry Smith For structured grid problems, in general it is easiest to use MatSetValuesStencil() or MatSetValuesLocal() to put values into the matrix because MatSetValues() requires 1420aa219208SBarry Smith the indices for the global numbering for DMDAs which is complicated. 142194013140SBarry Smith 1422db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 142347c6ae99SBarry Smith 1424aab9d709SJed Brown @*/ 1425b412c318SBarry Smith PetscErrorCode DMCreateMatrix(DM dm,Mat *mat) 142647c6ae99SBarry Smith { 142747c6ae99SBarry Smith PetscFunctionBegin; 1428171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1429064a246eSJacob Faibussowitsch PetscValidPointer(mat,2); 14307a8be351SBarry Smith PetscCheck(dm->ops->creatematrix,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateMatrix",((PetscObject)dm)->type_name); 14319566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14329566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix,0,0,0,0)); 14339566063dSJacob Faibussowitsch PetscCall((*dm->ops->creatematrix)(dm,mat)); 143476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1435c6b011d8SStefano Zampini DM mdm; 1436c6b011d8SStefano Zampini 14379566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat,&mdm)); 14387a8be351SBarry Smith PetscCheck(mdm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"DM type '%s' did not attach the DM to the matrix",((PetscObject)dm)->type_name); 1439c6b011d8SStefano Zampini } 1440e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1441e5e52638SMatthew G. Knepley if (dm->Nf) { 1442e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1443649ef022SMatthew Knepley PetscInt Nf, f; 1444e571a35bSMatthew G. Knepley 14459566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1446649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1447649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14489566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14499566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14509566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1451649ef022SMatthew Knepley break; 1452e571a35bSMatthew G. Knepley } 1453649ef022SMatthew Knepley } 1454649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1455649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 14569566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 14579566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 14589566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1459e571a35bSMatthew G. Knepley } 1460e571a35bSMatthew G. Knepley } 1461e571a35bSMatthew G. Knepley } 14629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix,0,0,0,0)); 146347c6ae99SBarry Smith PetscFunctionReturn(0); 146447c6ae99SBarry Smith } 146547c6ae99SBarry Smith 1466732e2eb9SMatthew G Knepley /*@ 1467aa0f6e3cSJed Brown DMSetMatrixPreallocateSkip - When DMCreateMatrix() is called the matrix sizes and ISLocalToGlobalMapping will be 1468aa0f6e3cSJed Brown properly set, but the entries will not be preallocated. This is most useful to reduce initialization costs when 1469aa0f6e3cSJed Brown MatSetPreallocationCOO() and MatSetValuesCOO() will be used. 1470aa0f6e3cSJed Brown 1471aa0f6e3cSJed Brown Logically Collective on dm 1472aa0f6e3cSJed Brown 1473aa0f6e3cSJed Brown Input Parameters: 1474aa0f6e3cSJed Brown + dm - the DM 1475aa0f6e3cSJed Brown - skip - PETSC_TRUE to skip preallocation 1476aa0f6e3cSJed Brown 1477aa0f6e3cSJed Brown Level: developer 1478aa0f6e3cSJed Brown 1479db781477SPatrick Sanan .seealso `DMCreateMatrix()`, `DMSetMatrixStructureOnly()` 1480aa0f6e3cSJed Brown @*/ 1481aa0f6e3cSJed Brown PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1482aa0f6e3cSJed Brown { 1483aa0f6e3cSJed Brown PetscFunctionBegin; 1484aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1485aa0f6e3cSJed Brown dm->prealloc_skip = skip; 1486aa0f6e3cSJed Brown PetscFunctionReturn(0); 1487aa0f6e3cSJed Brown } 1488aa0f6e3cSJed Brown 1489aa0f6e3cSJed Brown /*@ 1490950540a4SJed Brown DMSetMatrixPreallocateOnly - When DMCreateMatrix() is called the matrix will be properly 1491732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1492732e2eb9SMatthew G Knepley 1493d083f849SBarry Smith Logically Collective on dm 1494732e2eb9SMatthew G Knepley 1495d8d19677SJose E. Roman Input Parameters: 1496732e2eb9SMatthew G Knepley + dm - the DM 1497732e2eb9SMatthew G Knepley - only - PETSC_TRUE if only want preallocation 1498732e2eb9SMatthew G Knepley 1499732e2eb9SMatthew G Knepley Level: developer 1500f27dd7c6SMatthew G. Knepley 1501f27dd7c6SMatthew G. Knepley Options Database Keys: 15025b8ffe73SMark Adams . -dm_preallocate_only - Only preallocate the matrix for DMCreateMatrix(), DMCreateMassMatrix(), but do not fill it with zeros 1503f27dd7c6SMatthew G. Knepley 1504db781477SPatrick Sanan .seealso `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()` 1505732e2eb9SMatthew G Knepley @*/ 1506732e2eb9SMatthew G Knepley PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1507732e2eb9SMatthew G Knepley { 1508732e2eb9SMatthew G Knepley PetscFunctionBegin; 1509732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1510732e2eb9SMatthew G Knepley dm->prealloc_only = only; 1511732e2eb9SMatthew G Knepley PetscFunctionReturn(0); 1512732e2eb9SMatthew G Knepley } 1513732e2eb9SMatthew G Knepley 1514b06ff27eSHong Zhang /*@ 1515b06ff27eSHong Zhang DMSetMatrixStructureOnly - When DMCreateMatrix() is called, the matrix structure will be created 1516b06ff27eSHong Zhang but the array for values will not be allocated. 1517b06ff27eSHong Zhang 1518d083f849SBarry Smith Logically Collective on dm 1519b06ff27eSHong Zhang 1520d8d19677SJose E. Roman Input Parameters: 1521b06ff27eSHong Zhang + dm - the DM 1522b06ff27eSHong Zhang - only - PETSC_TRUE if only want matrix stucture 1523b06ff27eSHong Zhang 1524b06ff27eSHong Zhang Level: developer 1525db781477SPatrick Sanan .seealso `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()` 1526b06ff27eSHong Zhang @*/ 1527b06ff27eSHong Zhang PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1528b06ff27eSHong Zhang { 1529b06ff27eSHong Zhang PetscFunctionBegin; 1530b06ff27eSHong Zhang PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1531b06ff27eSHong Zhang dm->structure_only = only; 1532b06ff27eSHong Zhang PetscFunctionReturn(0); 1533b06ff27eSHong Zhang } 1534b06ff27eSHong Zhang 1535a89ea682SMatthew G Knepley /*@C 1536aa1993deSMatthew G Knepley DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with DMRestoreWorkArray() 1537a89ea682SMatthew G Knepley 1538a89ea682SMatthew G Knepley Not Collective 1539a89ea682SMatthew G Knepley 1540a89ea682SMatthew G Knepley Input Parameters: 1541a89ea682SMatthew G Knepley + dm - the DM object 1542a5b23f4aSJose E. Roman . count - The minimum size 154369291d52SBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, MPIU_INT) 1544a89ea682SMatthew G Knepley 1545a89ea682SMatthew G Knepley Output Parameter: 1546a89ea682SMatthew G Knepley . array - the work array 1547a89ea682SMatthew G Knepley 1548a89ea682SMatthew G Knepley Level: developer 1549a89ea682SMatthew G Knepley 1550db781477SPatrick Sanan .seealso `DMDestroy()`, `DMCreate()` 1551a89ea682SMatthew G Knepley @*/ 155269291d52SBarry Smith PetscErrorCode DMGetWorkArray(DM dm,PetscInt count,MPI_Datatype dtype,void *mem) 1553a89ea682SMatthew G Knepley { 1554aa1993deSMatthew G Knepley DMWorkLink link; 155569291d52SBarry Smith PetscMPIInt dsize; 1556a89ea682SMatthew G Knepley 1557a89ea682SMatthew G Knepley PetscFunctionBegin; 1558a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1559aa1993deSMatthew G Knepley PetscValidPointer(mem,4); 1560aa1993deSMatthew G Knepley if (dm->workin) { 1561aa1993deSMatthew G Knepley link = dm->workin; 1562aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1563aa1993deSMatthew G Knepley } else { 15649566063dSJacob Faibussowitsch PetscCall(PetscNewLog(dm,&link)); 1565a89ea682SMatthew G Knepley } 15669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_size(dtype,&dsize)); 15675056fcd2SBarry Smith if (((size_t)dsize*count) > link->bytes) { 15689566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 15699566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize*count,&link->mem)); 1570854ce69bSBarry Smith link->bytes = dsize*count; 1571aa1993deSMatthew G Knepley } 1572aa1993deSMatthew G Knepley link->next = dm->workout; 1573aa1993deSMatthew G Knepley dm->workout = link; 1574cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 157500d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char*)link->mem + (size_t)dsize*count, link->bytes - (size_t)dsize*count); 157600d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize*count); 157700d952a4SJed Brown #endif 1578aa1993deSMatthew G Knepley *(void**)mem = link->mem; 1579a89ea682SMatthew G Knepley PetscFunctionReturn(0); 1580a89ea682SMatthew G Knepley } 1581a89ea682SMatthew G Knepley 1582aa1993deSMatthew G Knepley /*@C 1583aa1993deSMatthew G Knepley DMRestoreWorkArray - Restores a work array guaranteed to be at least the input size, restore with DMRestoreWorkArray() 1584aa1993deSMatthew G Knepley 1585aa1993deSMatthew G Knepley Not Collective 1586aa1993deSMatthew G Knepley 1587aa1993deSMatthew G Knepley Input Parameters: 1588aa1993deSMatthew G Knepley + dm - the DM object 1589a5b23f4aSJose E. Roman . count - The minimum size 159069291d52SBarry Smith - dtype - MPI data type, often MPIU_REAL, MPIU_SCALAR, MPIU_INT 1591aa1993deSMatthew G Knepley 1592aa1993deSMatthew G Knepley Output Parameter: 1593aa1993deSMatthew G Knepley . array - the work array 1594aa1993deSMatthew G Knepley 1595aa1993deSMatthew G Knepley Level: developer 1596aa1993deSMatthew G Knepley 159795452b02SPatrick Sanan Developer Notes: 159895452b02SPatrick Sanan count and dtype are ignored, they are only needed for DMGetWorkArray() 1599147403d9SBarry Smith 1600db781477SPatrick Sanan .seealso `DMDestroy()`, `DMCreate()` 1601aa1993deSMatthew G Knepley @*/ 160269291d52SBarry Smith PetscErrorCode DMRestoreWorkArray(DM dm,PetscInt count,MPI_Datatype dtype,void *mem) 1603aa1993deSMatthew G Knepley { 1604aa1993deSMatthew G Knepley DMWorkLink *p,link; 1605aa1993deSMatthew G Knepley 1606aa1993deSMatthew G Knepley PetscFunctionBegin; 1607aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1608aa1993deSMatthew G Knepley PetscValidPointer(mem,4); 1609aa1993deSMatthew G Knepley for (p=&dm->workout; (link=*p); p=&link->next) { 1610aa1993deSMatthew G Knepley if (link->mem == *(void**)mem) { 1611aa1993deSMatthew G Knepley *p = link->next; 1612aa1993deSMatthew G Knepley link->next = dm->workin; 1613aa1993deSMatthew G Knepley dm->workin = link; 16140298fd71SBarry Smith *(void**)mem = NULL; 1615aa1993deSMatthew G Knepley PetscFunctionReturn(0); 1616aa1993deSMatthew G Knepley } 1617aa1993deSMatthew G Knepley } 1618aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Array was not checked out"); 1619aa1993deSMatthew G Knepley } 1620e7c4fc90SDmitry Karpeev 16218cda7954SMatthew G. Knepley /*@C 1622147403d9SBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field when function spaces are joined or split, such as in DMCreateSubDM() 16238cda7954SMatthew G. Knepley 16248cda7954SMatthew G. Knepley Logically collective on DM 16258cda7954SMatthew G. Knepley 16268cda7954SMatthew G. Knepley Input Parameters: 16278cda7954SMatthew G. Knepley + dm - The DM 16288cda7954SMatthew G. Knepley . field - The field number for the nullspace 16298cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 16308cda7954SMatthew G. Knepley 1631147403d9SBarry Smith Calling sequence of nullsp: 1632147403d9SBarry Smith .vb 1633147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1634147403d9SBarry Smith .ve 1635147403d9SBarry Smith + dm - The present DM 1636147403d9SBarry Smith . origField - The field number given above, in the original DM 1637147403d9SBarry Smith . field - The field number in dm 1638147403d9SBarry Smith - nullSpace - The nullspace for the given field 16398cda7954SMatthew G. Knepley 16408cda7954SMatthew G. Knepley This function is currently not available from Fortran. 16418cda7954SMatthew G. Knepley 164249762cbcSSatish Balay Level: intermediate 164349762cbcSSatish Balay 1644db781477SPatrick Sanan .seealso: `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1645147403d9SBarry Smith @*/ 1646147403d9SBarry Smith PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace*)) 1647435a35e8SMatthew G Knepley { 1648435a35e8SMatthew G Knepley PetscFunctionBegin; 1649435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16507a8be351SBarry Smith PetscCheck(field < 10,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1651435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 1652435a35e8SMatthew G Knepley PetscFunctionReturn(0); 1653435a35e8SMatthew G Knepley } 1654435a35e8SMatthew G Knepley 16558cda7954SMatthew G. Knepley /*@C 16568cda7954SMatthew G. Knepley DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, or NULL 16578cda7954SMatthew G. Knepley 16588cda7954SMatthew G. Knepley Not collective 16598cda7954SMatthew G. Knepley 16608cda7954SMatthew G. Knepley Input Parameters: 16618cda7954SMatthew G. Knepley + dm - The DM 16628cda7954SMatthew G. Knepley - field - The field number for the nullspace 16638cda7954SMatthew G. Knepley 16648cda7954SMatthew G. Knepley Output Parameter: 16658cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 16668cda7954SMatthew G. Knepley 1667147403d9SBarry Smith Calling sequence of nullsp: 1668147403d9SBarry Smith .vb 1669147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1670147403d9SBarry Smith .ve 1671147403d9SBarry Smith + dm - The present DM 1672147403d9SBarry Smith . origField - The field number given above, in the original DM 1673147403d9SBarry Smith . field - The field number in dm 1674147403d9SBarry Smith - nullSpace - The nullspace for the given field 16758cda7954SMatthew G. Knepley 16768cda7954SMatthew G. Knepley This function is currently not available from Fortran. 16778cda7954SMatthew G. Knepley 167849762cbcSSatish Balay Level: intermediate 167949762cbcSSatish Balay 1680db781477SPatrick Sanan .seealso: `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1681147403d9SBarry Smith @*/ 1682147403d9SBarry Smith PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 16830a50eb56SMatthew G. Knepley { 16840a50eb56SMatthew G. Knepley PetscFunctionBegin; 16850a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1686f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 16877a8be351SBarry Smith PetscCheck(field < 10,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 16880a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 16890a50eb56SMatthew G. Knepley PetscFunctionReturn(0); 16900a50eb56SMatthew G. Knepley } 16910a50eb56SMatthew G. Knepley 16928cda7954SMatthew G. Knepley /*@C 16938cda7954SMatthew G. Knepley DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field 16948cda7954SMatthew G. Knepley 16958cda7954SMatthew G. Knepley Logically collective on DM 16968cda7954SMatthew G. Knepley 16978cda7954SMatthew G. Knepley Input Parameters: 16988cda7954SMatthew G. Knepley + dm - The DM 16998cda7954SMatthew G. Knepley . field - The field number for the nullspace 17008cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 17018cda7954SMatthew G. Knepley 1702147403d9SBarry Smith Calling sequence of nullsp: 1703147403d9SBarry Smith .vb 1704147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1705147403d9SBarry Smith .ve 1706147403d9SBarry Smith + dm - The present DM 1707147403d9SBarry Smith . origField - The field number given above, in the original DM 1708147403d9SBarry Smith . field - The field number in dm 1709147403d9SBarry Smith - nullSpace - The nullspace for the given field 17108cda7954SMatthew G. Knepley 17118cda7954SMatthew G. Knepley This function is currently not available from Fortran. 17128cda7954SMatthew G. Knepley 171349762cbcSSatish Balay Level: intermediate 171449762cbcSSatish Balay 1715db781477SPatrick Sanan .seealso: `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1716147403d9SBarry Smith @*/ 1717147403d9SBarry Smith PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1718f9d4088aSMatthew G. Knepley { 1719f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1720f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17217a8be351SBarry Smith PetscCheck(field < 10,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1722f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 1723f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1724f9d4088aSMatthew G. Knepley } 1725f9d4088aSMatthew G. Knepley 17268cda7954SMatthew G. Knepley /*@C 17278cda7954SMatthew G. Knepley DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, or NULL 17288cda7954SMatthew G. Knepley 17298cda7954SMatthew G. Knepley Not collective 17308cda7954SMatthew G. Knepley 17318cda7954SMatthew G. Knepley Input Parameters: 17328cda7954SMatthew G. Knepley + dm - The DM 17338cda7954SMatthew G. Knepley - field - The field number for the nullspace 17348cda7954SMatthew G. Knepley 17358cda7954SMatthew G. Knepley Output Parameter: 17368cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 17378cda7954SMatthew G. Knepley 1738147403d9SBarry Smith Calling sequence of nullsp: 1739147403d9SBarry Smith .vb 1740147403d9SBarry Smith PetscErrorCode nullsp(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace) 1741147403d9SBarry Smith .ve 1742147403d9SBarry Smith + dm - The present DM 1743147403d9SBarry Smith . origField - The field number given above, in the original DM 1744147403d9SBarry Smith . field - The field number in dm 1745147403d9SBarry Smith - nullSpace - The nullspace for the given field 17468cda7954SMatthew G. Knepley 17478cda7954SMatthew G. Knepley This function is currently not available from Fortran. 17488cda7954SMatthew G. Knepley 174949762cbcSSatish Balay Level: intermediate 175049762cbcSSatish Balay 1751db781477SPatrick Sanan .seealso: `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1752147403d9SBarry Smith @*/ 1753147403d9SBarry Smith PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM, PetscInt, PetscInt, MatNullSpace *)) 1754f9d4088aSMatthew G. Knepley { 1755f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1756f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1757f9d4088aSMatthew G. Knepley PetscValidPointer(nullsp, 3); 17587a8be351SBarry Smith PetscCheck(field < 10,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1759f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 1760f9d4088aSMatthew G. Knepley PetscFunctionReturn(0); 1761f9d4088aSMatthew G. Knepley } 1762f9d4088aSMatthew G. Knepley 17634f3b5142SJed Brown /*@C 17644d343eeaSMatthew G Knepley DMCreateFieldIS - Creates a set of IS objects with the global indices of dofs for each field 17654d343eeaSMatthew G Knepley 17664d343eeaSMatthew G Knepley Not collective 17674d343eeaSMatthew G Knepley 17684d343eeaSMatthew G Knepley Input Parameter: 17694d343eeaSMatthew G Knepley . dm - the DM object 17704d343eeaSMatthew G Knepley 17714d343eeaSMatthew G Knepley Output Parameters: 17720298fd71SBarry Smith + numFields - The number of fields (or NULL if not requested) 17730298fd71SBarry Smith . fieldNames - The name for each field (or NULL if not requested) 17740298fd71SBarry Smith - fields - The global indices for each field (or NULL if not requested) 17754d343eeaSMatthew G Knepley 17764d343eeaSMatthew G Knepley Level: intermediate 17774d343eeaSMatthew G Knepley 177821c9b008SJed Brown Notes: 177921c9b008SJed Brown The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 178021c9b008SJed Brown PetscFree(), every entry of fields should be destroyed with ISDestroy(), and both arrays should be freed with 178121c9b008SJed Brown PetscFree(). 178221c9b008SJed Brown 1783db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 17844d343eeaSMatthew G Knepley @*/ 178537d0c07bSMatthew G Knepley PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 17864d343eeaSMatthew G Knepley { 178737d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 17884d343eeaSMatthew G Knepley 17894d343eeaSMatthew G Knepley PetscFunctionBegin; 17904d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 179169ca1f37SDmitry Karpeev if (numFields) { 1792534a8f05SLisandro Dalcin PetscValidIntPointer(numFields,2); 179369ca1f37SDmitry Karpeev *numFields = 0; 179469ca1f37SDmitry Karpeev } 179537d0c07bSMatthew G Knepley if (fieldNames) { 179637d0c07bSMatthew G Knepley PetscValidPointer(fieldNames,3); 17970298fd71SBarry Smith *fieldNames = NULL; 179869ca1f37SDmitry Karpeev } 179969ca1f37SDmitry Karpeev if (fields) { 180069ca1f37SDmitry Karpeev PetscValidPointer(fields,4); 18010298fd71SBarry Smith *fields = NULL; 180269ca1f37SDmitry Karpeev } 18039566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 180437d0c07bSMatthew G Knepley if (section) { 18053a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 180637d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 180737d0c07bSMatthew G Knepley 18089566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 18099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 18109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF,&fieldSizes,nF,&fieldNc,nF,&fieldIndices)); 18119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 181237d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 181337d0c07bSMatthew G Knepley fieldSizes[f] = 0; 18149566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 181537d0c07bSMatthew G Knepley } 181637d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 181737d0c07bSMatthew G Knepley PetscInt gdof; 181837d0c07bSMatthew G Knepley 18199566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 182037d0c07bSMatthew G Knepley if (gdof > 0) { 182137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 18223a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 182337d0c07bSMatthew G Knepley 18249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 18259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 18263a544194SStefano Zampini fpdof = fdof-fcdof; 18273a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 18283a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 18293a544194SStefano Zampini fieldNc[f] = 1; 18303a544194SStefano Zampini } 18313a544194SStefano Zampini fieldSizes[f] += fpdof; 183237d0c07bSMatthew G Knepley } 183337d0c07bSMatthew G Knepley } 183437d0c07bSMatthew G Knepley } 183537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 183737d0c07bSMatthew G Knepley fieldSizes[f] = 0; 183837d0c07bSMatthew G Knepley } 183937d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 184037d0c07bSMatthew G Knepley PetscInt gdof, goff; 184137d0c07bSMatthew G Knepley 18429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 184337d0c07bSMatthew G Knepley if (gdof > 0) { 18449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 184537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 184637d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 184737d0c07bSMatthew G Knepley 18489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 18499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 185037d0c07bSMatthew G Knepley for (fc = 0; fc < fdof-fcdof; ++fc, ++fieldSizes[f]) { 185137d0c07bSMatthew G Knepley fieldIndices[f][fieldSizes[f]] = goff++; 185237d0c07bSMatthew G Knepley } 185337d0c07bSMatthew G Knepley } 185437d0c07bSMatthew G Knepley } 185537d0c07bSMatthew G Knepley } 18568865f1eaSKarl Rupp if (numFields) *numFields = nF; 185737d0c07bSMatthew G Knepley if (fieldNames) { 18589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 185937d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 186037d0c07bSMatthew G Knepley const char *fieldName; 186137d0c07bSMatthew G Knepley 18629566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 18639566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char**) &(*fieldNames)[f])); 186437d0c07bSMatthew G Knepley } 186537d0c07bSMatthew G Knepley } 186637d0c07bSMatthew G Knepley if (fields) { 18679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 186837d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 18693a544194SStefano Zampini PetscInt bs, in[2], out[2]; 18703a544194SStefano Zampini 18719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 18723a544194SStefano Zampini in[0] = -fieldNc[f]; 18733a544194SStefano Zampini in[1] = fieldNc[f]; 18741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 18753a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 18769566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 187737d0c07bSMatthew G Knepley } 187837d0c07bSMatthew G Knepley } 18799566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes,fieldNc,fieldIndices)); 18801baa6e33SBarry Smith } else if (dm->ops->createfieldis) PetscCall((*dm->ops->createfieldis)(dm, numFields, fieldNames, fields)); 18814d343eeaSMatthew G Knepley PetscFunctionReturn(0); 18824d343eeaSMatthew G Knepley } 18834d343eeaSMatthew G Knepley 188416621825SDmitry Karpeev /*@C 188516621825SDmitry Karpeev DMCreateFieldDecomposition - Returns a list of IS objects defining a decomposition of a problem into subproblems 188616621825SDmitry Karpeev corresponding to different fields: each IS contains the global indices of the dofs of the 188716621825SDmitry Karpeev corresponding field. The optional list of DMs define the DM for each subproblem. 1888e7c4fc90SDmitry Karpeev Generalizes DMCreateFieldIS(). 1889e7c4fc90SDmitry Karpeev 1890e7c4fc90SDmitry Karpeev Not collective 1891e7c4fc90SDmitry Karpeev 1892e7c4fc90SDmitry Karpeev Input Parameter: 1893e7c4fc90SDmitry Karpeev . dm - the DM object 1894e7c4fc90SDmitry Karpeev 1895e7c4fc90SDmitry Karpeev Output Parameters: 18960298fd71SBarry Smith + len - The number of subproblems in the field decomposition (or NULL if not requested) 18970298fd71SBarry Smith . namelist - The name for each field (or NULL if not requested) 18980298fd71SBarry Smith . islist - The global indices for each field (or NULL if not requested) 18990298fd71SBarry Smith - dmlist - The DMs for each field subproblem (or NULL, if not requested; if NULL is returned, no DMs are defined) 1900e7c4fc90SDmitry Karpeev 1901e7c4fc90SDmitry Karpeev Level: intermediate 1902e7c4fc90SDmitry Karpeev 1903e7c4fc90SDmitry Karpeev Notes: 1904e7c4fc90SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 1905e7c4fc90SDmitry Karpeev PetscFree(), every entry of is should be destroyed with ISDestroy(), every entry of dm should be destroyed with DMDestroy(), 1906e7c4fc90SDmitry Karpeev and all of the arrays should be freed with PetscFree(). 1907e7c4fc90SDmitry Karpeev 1908db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 1909e7c4fc90SDmitry Karpeev @*/ 191016621825SDmitry Karpeev PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 1911e7c4fc90SDmitry Karpeev { 1912e7c4fc90SDmitry Karpeev PetscFunctionBegin; 1913e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm,DM_CLASSID,1); 19148865f1eaSKarl Rupp if (len) { 1915534a8f05SLisandro Dalcin PetscValidIntPointer(len,2); 19168865f1eaSKarl Rupp *len = 0; 19178865f1eaSKarl Rupp } 19188865f1eaSKarl Rupp if (namelist) { 19198865f1eaSKarl Rupp PetscValidPointer(namelist,3); 1920ea78f98cSLisandro Dalcin *namelist = NULL; 19218865f1eaSKarl Rupp } 19228865f1eaSKarl Rupp if (islist) { 19238865f1eaSKarl Rupp PetscValidPointer(islist,4); 1924ea78f98cSLisandro Dalcin *islist = NULL; 19258865f1eaSKarl Rupp } 19268865f1eaSKarl Rupp if (dmlist) { 19278865f1eaSKarl Rupp PetscValidPointer(dmlist,5); 1928ea78f98cSLisandro Dalcin *dmlist = NULL; 19298865f1eaSKarl Rupp } 1930f3f0edfdSDmitry Karpeev /* 1931f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 1932f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 1933f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 1934f3f0edfdSDmitry Karpeev */ 19357a8be351SBarry Smith PetscCheck(dm->setupcalled,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 193616621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 1937435a35e8SMatthew G Knepley PetscSection section; 1938435a35e8SMatthew G Knepley PetscInt numFields, f; 1939435a35e8SMatthew G Knepley 19409566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 19419566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 1942435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 1943f25d98f1SMatthew G. Knepley if (len) *len = numFields; 19449566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields,namelist)); 19459566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields,islist)); 19469566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields,dmlist)); 1947435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 1948435a35e8SMatthew G Knepley const char *fieldName; 1949435a35e8SMatthew G Knepley 19509566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 195103dc3394SMatthew G. Knepley if (namelist) { 19529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char**) &(*namelist)[f])); 1954435a35e8SMatthew G Knepley } 195503dc3394SMatthew G. Knepley } 1956435a35e8SMatthew G Knepley } else { 19579566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 1958e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 19590298fd71SBarry Smith if (dmlist) *dmlist = NULL; 1960e7c4fc90SDmitry Karpeev } 19618865f1eaSKarl Rupp } else { 19629566063dSJacob Faibussowitsch PetscCall((*dm->ops->createfielddecomposition)(dm,len,namelist,islist,dmlist)); 196316621825SDmitry Karpeev } 196416621825SDmitry Karpeev PetscFunctionReturn(0); 196516621825SDmitry Karpeev } 196616621825SDmitry Karpeev 1967564cec59SMatthew G. Knepley /*@ 1968435a35e8SMatthew G Knepley DMCreateSubDM - Returns an IS and DM encapsulating a subproblem defined by the fields passed in. 1969435a35e8SMatthew G Knepley The fields are defined by DMCreateFieldIS(). 1970435a35e8SMatthew G Knepley 1971435a35e8SMatthew G Knepley Not collective 1972435a35e8SMatthew G Knepley 1973435a35e8SMatthew G Knepley Input Parameters: 19742adcc780SMatthew G. Knepley + dm - The DM object 19752adcc780SMatthew G. Knepley . numFields - The number of fields in this subproblem 19762adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 1977435a35e8SMatthew G Knepley 1978435a35e8SMatthew G Knepley Output Parameters: 19792adcc780SMatthew G. Knepley + is - The global indices for the subproblem 19802adcc780SMatthew G. Knepley - subdm - The DM for the subproblem 1981435a35e8SMatthew G Knepley 19825d3b26e6SMatthew G. Knepley Note: You need to call DMPlexSetMigrationSF() on the original DM if you want the Global-To-Natural map to be automatically constructed 19835d3b26e6SMatthew G. Knepley 1984435a35e8SMatthew G Knepley Level: intermediate 1985435a35e8SMatthew G Knepley 1986db781477SPatrick Sanan .seealso `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 1987435a35e8SMatthew G Knepley @*/ 198837bc7515SMatthew G. Knepley PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 1989435a35e8SMatthew G Knepley { 1990435a35e8SMatthew G Knepley PetscFunctionBegin; 1991435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 1992dadcf809SJacob Faibussowitsch PetscValidIntPointer(fields,3); 19938865f1eaSKarl Rupp if (is) PetscValidPointer(is,4); 19948865f1eaSKarl Rupp if (subdm) PetscValidPointer(subdm,5); 19957a8be351SBarry Smith PetscCheck(dm->ops->createsubdm,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateSubDM",((PetscObject)dm)->type_name); 19969566063dSJacob Faibussowitsch PetscCall((*dm->ops->createsubdm)(dm, numFields, fields, is, subdm)); 1997435a35e8SMatthew G Knepley PetscFunctionReturn(0); 1998435a35e8SMatthew G Knepley } 1999435a35e8SMatthew G Knepley 20002adcc780SMatthew G. Knepley /*@C 20012adcc780SMatthew G. Knepley DMCreateSuperDM - Returns an arrays of ISes and DM encapsulating a superproblem defined by the DMs passed in. 20022adcc780SMatthew G. Knepley 20032adcc780SMatthew G. Knepley Not collective 20042adcc780SMatthew G. Knepley 2005d8d19677SJose E. Roman Input Parameters: 20062adcc780SMatthew G. Knepley + dms - The DM objects 20072adcc780SMatthew G. Knepley - len - The number of DMs 20082adcc780SMatthew G. Knepley 20092adcc780SMatthew G. Knepley Output Parameters: 2010a42bd24dSMatthew G. Knepley + is - The global indices for the subproblem, or NULL 20112adcc780SMatthew G. Knepley - superdm - The DM for the superproblem 20122adcc780SMatthew G. Knepley 20135d3b26e6SMatthew G. Knepley Note: You need to call DMPlexSetMigrationSF() on the original DM if you want the Global-To-Natural map to be automatically constructed 20145d3b26e6SMatthew G. Knepley 20152adcc780SMatthew G. Knepley Level: intermediate 20162adcc780SMatthew G. Knepley 2017db781477SPatrick Sanan .seealso `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 20182adcc780SMatthew G. Knepley @*/ 20192adcc780SMatthew G. Knepley PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt len, IS **is, DM *superdm) 20202adcc780SMatthew G. Knepley { 20212adcc780SMatthew G. Knepley PetscInt i; 20222adcc780SMatthew G. Knepley 20232adcc780SMatthew G. Knepley PetscFunctionBegin; 20242adcc780SMatthew G. Knepley PetscValidPointer(dms,1); 20252adcc780SMatthew G. Knepley for (i = 0; i < len; ++i) {PetscValidHeaderSpecific(dms[i],DM_CLASSID,1);} 20262adcc780SMatthew G. Knepley if (is) PetscValidPointer(is,3); 2027a42bd24dSMatthew G. Knepley PetscValidPointer(superdm,4); 202863a3b9bcSJacob Faibussowitsch PetscCheck(len >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, len); 20292adcc780SMatthew G. Knepley if (len) { 2030b9d85ea2SLisandro Dalcin DM dm = dms[0]; 20317a8be351SBarry Smith PetscCheck(dm->ops->createsuperdm,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateSuperDM",((PetscObject)dm)->type_name); 20329566063dSJacob Faibussowitsch PetscCall((*dm->ops->createsuperdm)(dms, len, is, superdm)); 20332adcc780SMatthew G. Knepley } 20342adcc780SMatthew G. Knepley PetscFunctionReturn(0); 20352adcc780SMatthew G. Knepley } 20362adcc780SMatthew G. Knepley 203716621825SDmitry Karpeev /*@C 20388d4ac253SDmitry Karpeev DMCreateDomainDecomposition - Returns lists of IS objects defining a decomposition of a problem into subproblems 20398d4ac253SDmitry Karpeev corresponding to restrictions to pairs nested subdomains: each IS contains the global 20408d4ac253SDmitry Karpeev indices of the dofs of the corresponding subdomains. The inner subdomains conceptually 20418d4ac253SDmitry Karpeev define a nonoverlapping covering, while outer subdomains can overlap. 20428d4ac253SDmitry Karpeev The optional list of DMs define the DM for each subproblem. 204316621825SDmitry Karpeev 204416621825SDmitry Karpeev Not collective 204516621825SDmitry Karpeev 204616621825SDmitry Karpeev Input Parameter: 204716621825SDmitry Karpeev . dm - the DM object 204816621825SDmitry Karpeev 204916621825SDmitry Karpeev Output Parameters: 20500298fd71SBarry Smith + len - The number of subproblems in the domain decomposition (or NULL if not requested) 20510298fd71SBarry Smith . namelist - The name for each subdomain (or NULL if not requested) 20520298fd71SBarry Smith . innerislist - The global indices for each inner subdomain (or NULL, if not requested) 20530298fd71SBarry Smith . outerislist - The global indices for each outer subdomain (or NULL, if not requested) 20540298fd71SBarry Smith - dmlist - The DMs for each subdomain subproblem (or NULL, if not requested; if NULL is returned, no DMs are defined) 205516621825SDmitry Karpeev 205616621825SDmitry Karpeev Level: intermediate 205716621825SDmitry Karpeev 205816621825SDmitry Karpeev Notes: 205916621825SDmitry Karpeev The user is responsible for freeing all requested arrays. In particular, every entry of names should be freed with 206016621825SDmitry Karpeev PetscFree(), every entry of is should be destroyed with ISDestroy(), every entry of dm should be destroyed with DMDestroy(), 206116621825SDmitry Karpeev and all of the arrays should be freed with PetscFree(). 206216621825SDmitry Karpeev 2063db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldDecomposition()` 206416621825SDmitry Karpeev @*/ 20658d4ac253SDmitry Karpeev PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *len, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 206616621825SDmitry Karpeev { 2067be081cd6SPeter Brune DMSubDomainHookLink link; 2068be081cd6SPeter Brune PetscInt i,l; 206916621825SDmitry Karpeev 207016621825SDmitry Karpeev PetscFunctionBegin; 207116621825SDmitry Karpeev PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2072dadcf809SJacob Faibussowitsch if (len) {PetscValidIntPointer(len,2); *len = 0;} 20730298fd71SBarry Smith if (namelist) {PetscValidPointer(namelist,3); *namelist = NULL;} 20740298fd71SBarry Smith if (innerislist) {PetscValidPointer(innerislist,4); *innerislist = NULL;} 20750298fd71SBarry Smith if (outerislist) {PetscValidPointer(outerislist,5); *outerislist = NULL;} 20760298fd71SBarry Smith if (dmlist) {PetscValidPointer(dmlist,6); *dmlist = NULL;} 2077f3f0edfdSDmitry Karpeev /* 2078f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2079f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2080f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2081f3f0edfdSDmitry Karpeev */ 20827a8be351SBarry Smith PetscCheck(dm->setupcalled,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 208316621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 20849566063dSJacob Faibussowitsch PetscCall((*dm->ops->createdomaindecomposition)(dm,&l,namelist,innerislist,outerislist,dmlist)); 208514a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2086f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2087be081cd6SPeter Brune for (i = 0; i < l; i++) { 2088be081cd6SPeter Brune for (link=dm->subdomainhook; link; link=link->next) { 20899566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm,(*dmlist)[i],link->ctx)); 2090be081cd6SPeter Brune } 2091648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2092e7c4fc90SDmitry Karpeev } 209314a18fd3SPeter Brune } 209414a18fd3SPeter Brune if (len) *len = l; 209514a18fd3SPeter Brune } 2096e30e807fSPeter Brune PetscFunctionReturn(0); 2097e30e807fSPeter Brune } 2098e30e807fSPeter Brune 2099e30e807fSPeter Brune /*@C 2100e30e807fSPeter Brune DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector 2101e30e807fSPeter Brune 2102e30e807fSPeter Brune Not collective 2103e30e807fSPeter Brune 2104e30e807fSPeter Brune Input Parameters: 2105e30e807fSPeter Brune + dm - the DM object 2106e30e807fSPeter Brune . n - the number of subdomain scatters 2107e30e807fSPeter Brune - subdms - the local subdomains 2108e30e807fSPeter Brune 2109e30e807fSPeter Brune Output Parameters: 21106b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2111e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2112e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2113e30e807fSPeter Brune 211495452b02SPatrick Sanan Notes: 211595452b02SPatrick Sanan This is an alternative to the iis and ois arguments in DMCreateDomainDecomposition that allow for the solution 2116e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2117e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2118e30e807fSPeter Brune solution and residual data. 2119e30e807fSPeter Brune 2120e30e807fSPeter Brune Level: developer 2121e30e807fSPeter Brune 2122db781477SPatrick Sanan .seealso `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2123e30e807fSPeter Brune @*/ 2124e30e807fSPeter Brune PetscErrorCode DMCreateDomainDecompositionScatters(DM dm,PetscInt n,DM *subdms,VecScatter **iscat,VecScatter **oscat,VecScatter **gscat) 2125e30e807fSPeter Brune { 2126e30e807fSPeter Brune PetscFunctionBegin; 2127e30e807fSPeter Brune PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2128e30e807fSPeter Brune PetscValidPointer(subdms,3); 21297a8be351SBarry Smith PetscCheck(dm->ops->createddscatters,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCreateDomainDecompositionScatters",((PetscObject)dm)->type_name); 21309566063dSJacob Faibussowitsch PetscCall((*dm->ops->createddscatters)(dm,n,subdms,iscat,oscat,gscat)); 2131e7c4fc90SDmitry Karpeev PetscFunctionReturn(0); 2132e7c4fc90SDmitry Karpeev } 2133e7c4fc90SDmitry Karpeev 213447c6ae99SBarry Smith /*@ 213547c6ae99SBarry Smith DMRefine - Refines a DM object 213647c6ae99SBarry Smith 2137d083f849SBarry Smith Collective on dm 213847c6ae99SBarry Smith 2139d8d19677SJose E. Roman Input Parameters: 214047c6ae99SBarry Smith + dm - the DM object 214191d95f02SJed Brown - comm - the communicator to contain the new DM object (or MPI_COMM_NULL) 214247c6ae99SBarry Smith 214347c6ae99SBarry Smith Output Parameter: 21440298fd71SBarry Smith . dmf - the refined DM, or NULL 2145ae0a1c52SMatthew G Knepley 2146f27dd7c6SMatthew G. Knepley Options Database Keys: 2147412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2148412e9a14SMatthew G. Knepley 21490298fd71SBarry Smith Note: If no refinement was done, the return value is NULL 215047c6ae99SBarry Smith 215147c6ae99SBarry Smith Level: developer 215247c6ae99SBarry Smith 2153db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 215447c6ae99SBarry Smith @*/ 21557087cfbeSBarry Smith PetscErrorCode DMRefine(DM dm,MPI_Comm comm,DM *dmf) 215647c6ae99SBarry Smith { 2157c833c3b5SJed Brown DMRefineHookLink link; 215847c6ae99SBarry Smith 215947c6ae99SBarry Smith PetscFunctionBegin; 2160732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 21617a8be351SBarry Smith PetscCheck(dm->ops->refine,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMRefine",((PetscObject)dm)->type_name); 21629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine,dm,0,0,0)); 21639566063dSJacob Faibussowitsch PetscCall((*dm->ops->refine)(dm,comm,dmf)); 21644057135bSMatthew G Knepley if (*dmf) { 216543842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 21668865f1eaSKarl Rupp 21679566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm,(PetscObject)*dmf)); 21688865f1eaSKarl Rupp 2169644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 21700598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2171656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 21728865f1eaSKarl Rupp 21739566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf,dm->mattype)); 2174c833c3b5SJed Brown for (link=dm->refinehook; link; link=link->next) { 21751baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm,*dmf,link->ctx)); 2176c833c3b5SJed Brown } 2177c833c3b5SJed Brown } 21789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine,dm,0,0,0)); 2179c833c3b5SJed Brown PetscFunctionReturn(0); 2180c833c3b5SJed Brown } 2181c833c3b5SJed Brown 2182bb9467b5SJed Brown /*@C 2183c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2184c833c3b5SJed Brown 2185c833c3b5SJed Brown Logically Collective 2186c833c3b5SJed Brown 21874165533cSJose E. Roman Input Parameters: 2188c833c3b5SJed Brown + coarse - nonlinear solver context on which to run a hook when restricting to a coarser level 2189c833c3b5SJed Brown . refinehook - function to run when setting up a coarser level 2190c833c3b5SJed Brown . interphook - function to run to update data on finer levels (once per SNESSolve()) 21910298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2192c833c3b5SJed Brown 2193c833c3b5SJed Brown Calling sequence of refinehook: 2194c833c3b5SJed Brown $ refinehook(DM coarse,DM fine,void *ctx); 2195c833c3b5SJed Brown 2196c833c3b5SJed Brown + coarse - coarse level DM 2197c833c3b5SJed Brown . fine - fine level DM to interpolate problem to 2198c833c3b5SJed Brown - ctx - optional user-defined function context 2199c833c3b5SJed Brown 2200c833c3b5SJed Brown Calling sequence for interphook: 2201c833c3b5SJed Brown $ interphook(DM coarse,Mat interp,DM fine,void *ctx) 2202c833c3b5SJed Brown 2203c833c3b5SJed Brown + coarse - coarse level DM 2204c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2205c833c3b5SJed Brown . fine - fine level DM to update 2206c833c3b5SJed Brown - ctx - optional user-defined function context 2207c833c3b5SJed Brown 2208c833c3b5SJed Brown Level: advanced 2209c833c3b5SJed Brown 2210c833c3b5SJed Brown Notes: 2211c833c3b5SJed Brown This function is only needed if auxiliary data needs to be passed to fine grids while grid sequencing 2212c833c3b5SJed Brown 2213c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2214c833c3b5SJed Brown 2215bb9467b5SJed Brown This function is currently not available from Fortran. 2216bb9467b5SJed Brown 2217db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2218c833c3b5SJed Brown @*/ 2219c833c3b5SJed Brown PetscErrorCode DMRefineHookAdd(DM coarse,PetscErrorCode (*refinehook)(DM,DM,void*),PetscErrorCode (*interphook)(DM,Mat,DM,void*),void *ctx) 2220c833c3b5SJed Brown { 2221c833c3b5SJed Brown DMRefineHookLink link,*p; 2222c833c3b5SJed Brown 2223c833c3b5SJed Brown PetscFunctionBegin; 2224c833c3b5SJed Brown PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 22253d8e3701SJed Brown for (p=&coarse->refinehook; *p; p=&(*p)->next) { /* Scan to the end of the current list of hooks */ 22263d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(0); 22273d8e3701SJed Brown } 22289566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2229c833c3b5SJed Brown link->refinehook = refinehook; 2230c833c3b5SJed Brown link->interphook = interphook; 2231c833c3b5SJed Brown link->ctx = ctx; 22320298fd71SBarry Smith link->next = NULL; 2233c833c3b5SJed Brown *p = link; 2234c833c3b5SJed Brown PetscFunctionReturn(0); 2235c833c3b5SJed Brown } 2236c833c3b5SJed Brown 22373d8e3701SJed Brown /*@C 22383d8e3701SJed Brown DMRefineHookRemove - remove a callback from the list of hooks to be run when interpolating a nonlinear problem to a finer grid 22393d8e3701SJed Brown 22403d8e3701SJed Brown Logically Collective 22413d8e3701SJed Brown 22424165533cSJose E. Roman Input Parameters: 22433d8e3701SJed Brown + coarse - nonlinear solver context on which to run a hook when restricting to a coarser level 22443d8e3701SJed Brown . refinehook - function to run when setting up a coarser level 22453d8e3701SJed Brown . interphook - function to run to update data on finer levels (once per SNESSolve()) 22463d8e3701SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 22473d8e3701SJed Brown 22483d8e3701SJed Brown Level: advanced 22493d8e3701SJed Brown 22503d8e3701SJed Brown Notes: 22513d8e3701SJed Brown This function does nothing if the hook is not in the list. 22523d8e3701SJed Brown 22533d8e3701SJed Brown This function is currently not available from Fortran. 22543d8e3701SJed Brown 2255db781477SPatrick Sanan .seealso: `DMCoarsenHookRemove()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 22563d8e3701SJed Brown @*/ 22573d8e3701SJed Brown PetscErrorCode DMRefineHookRemove(DM coarse,PetscErrorCode (*refinehook)(DM,DM,void*),PetscErrorCode (*interphook)(DM,Mat,DM,void*),void *ctx) 22583d8e3701SJed Brown { 22593d8e3701SJed Brown DMRefineHookLink link,*p; 22603d8e3701SJed Brown 22613d8e3701SJed Brown PetscFunctionBegin; 22623d8e3701SJed Brown PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 22633d8e3701SJed Brown for (p=&coarse->refinehook; *p; p=&(*p)->next) { /* Search the list of current hooks */ 22643d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 22653d8e3701SJed Brown link = *p; 22663d8e3701SJed Brown *p = link->next; 22679566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 22683d8e3701SJed Brown break; 22693d8e3701SJed Brown } 22703d8e3701SJed Brown } 22713d8e3701SJed Brown PetscFunctionReturn(0); 22723d8e3701SJed Brown } 22733d8e3701SJed Brown 2274c833c3b5SJed Brown /*@ 2275c833c3b5SJed Brown DMInterpolate - interpolates user-defined problem data to a finer DM by running hooks registered by DMRefineHookAdd() 2276c833c3b5SJed Brown 2277c833c3b5SJed Brown Collective if any hooks are 2278c833c3b5SJed Brown 22794165533cSJose E. Roman Input Parameters: 2280c833c3b5SJed Brown + coarse - coarser DM to use as a base 2281e91eccc2SStefano Zampini . interp - interpolation matrix, apply using MatInterpolate() 2282c833c3b5SJed Brown - fine - finer DM to update 2283c833c3b5SJed Brown 2284c833c3b5SJed Brown Level: developer 2285c833c3b5SJed Brown 2286db781477SPatrick Sanan .seealso: `DMRefineHookAdd()`, `MatInterpolate()` 2287c833c3b5SJed Brown @*/ 2288c833c3b5SJed Brown PetscErrorCode DMInterpolate(DM coarse,Mat interp,DM fine) 2289c833c3b5SJed Brown { 2290c833c3b5SJed Brown DMRefineHookLink link; 2291c833c3b5SJed Brown 2292c833c3b5SJed Brown PetscFunctionBegin; 2293c833c3b5SJed Brown for (link=fine->refinehook; link; link=link->next) { 22941baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse,interp,fine,link->ctx)); 22954057135bSMatthew G Knepley } 229647c6ae99SBarry Smith PetscFunctionReturn(0); 229747c6ae99SBarry Smith } 229847c6ae99SBarry Smith 2299eb3f98d2SBarry Smith /*@ 23001f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 23011f3379b2SToby Isaac 23021f3379b2SToby Isaac Collective on DM 23031f3379b2SToby Isaac 23044165533cSJose E. Roman Input Parameters: 23051f3379b2SToby Isaac + coarse - coarse DM 23061f3379b2SToby Isaac . fine - fine DM 23071f3379b2SToby Isaac . interp - (optional) the matrix computed by DMCreateInterpolation(). Implementations may not need this, but if it 23081f3379b2SToby Isaac is available it can avoid some recomputation. If it is provided, MatInterpolate() will be used if 23091f3379b2SToby Isaac the coarse DM does not have a specialized implementation. 23101f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 23111f3379b2SToby Isaac 23124165533cSJose E. Roman Output Parameter: 23131f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 23141f3379b2SToby Isaac 23151f3379b2SToby Isaac Level: developer 23161f3379b2SToby Isaac 23171f3379b2SToby Isaac Note: This function exists because the interpolation of a solution vector between meshes is not always a linear 23181f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 23191f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 23201f3379b2SToby Isaac slope-limiting reconstruction. 23211f3379b2SToby Isaac 2322db781477SPatrick Sanan .seealso `DMInterpolate()`, `DMCreateInterpolation()` 23231f3379b2SToby Isaac @*/ 23241f3379b2SToby Isaac PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 23251f3379b2SToby Isaac { 23261f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM,DM,Mat,Vec,Vec) = NULL; 23271f3379b2SToby Isaac 23281f3379b2SToby Isaac PetscFunctionBegin; 23291f3379b2SToby Isaac PetscValidHeaderSpecific(coarse,DM_CLASSID,1); 23301f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp,MAT_CLASSID,3); 23311f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol,VEC_CLASSID,4); 23321f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol,VEC_CLASSID,5); 23331f3379b2SToby Isaac 23349566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse,"DMInterpolateSolution_C", &interpsol)); 23351f3379b2SToby Isaac if (interpsol) { 23369566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 23371f3379b2SToby Isaac } else if (interp) { 23389566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 233998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 23401f3379b2SToby Isaac PetscFunctionReturn(0); 23411f3379b2SToby Isaac } 23421f3379b2SToby Isaac 23431f3379b2SToby Isaac /*@ 2344aed49f88SRichard Tran Mills DMGetRefineLevel - Gets the number of refinements that have generated this DM. 2345eb3f98d2SBarry Smith 2346eb3f98d2SBarry Smith Not Collective 2347eb3f98d2SBarry Smith 2348eb3f98d2SBarry Smith Input Parameter: 2349eb3f98d2SBarry Smith . dm - the DM object 2350eb3f98d2SBarry Smith 2351eb3f98d2SBarry Smith Output Parameter: 2352eb3f98d2SBarry Smith . level - number of refinements 2353eb3f98d2SBarry Smith 2354eb3f98d2SBarry Smith Level: developer 2355eb3f98d2SBarry Smith 2356db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2357eb3f98d2SBarry Smith 2358eb3f98d2SBarry Smith @*/ 2359eb3f98d2SBarry Smith PetscErrorCode DMGetRefineLevel(DM dm,PetscInt *level) 2360eb3f98d2SBarry Smith { 2361eb3f98d2SBarry Smith PetscFunctionBegin; 2362eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2363eb3f98d2SBarry Smith *level = dm->levelup; 2364eb3f98d2SBarry Smith PetscFunctionReturn(0); 2365eb3f98d2SBarry Smith } 2366eb3f98d2SBarry Smith 2367fef3a512SBarry Smith /*@ 2368aed49f88SRichard Tran Mills DMSetRefineLevel - Sets the number of refinements that have generated this DM. 2369fef3a512SBarry Smith 2370fef3a512SBarry Smith Not Collective 2371fef3a512SBarry Smith 2372d8d19677SJose E. Roman Input Parameters: 2373fef3a512SBarry Smith + dm - the DM object 2374fef3a512SBarry Smith - level - number of refinements 2375fef3a512SBarry Smith 2376fef3a512SBarry Smith Level: advanced 2377fef3a512SBarry Smith 237895452b02SPatrick Sanan Notes: 237995452b02SPatrick Sanan This value is used by PCMG to determine how many multigrid levels to use 2380fef3a512SBarry Smith 2381db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2382fef3a512SBarry Smith 2383fef3a512SBarry Smith @*/ 2384fef3a512SBarry Smith PetscErrorCode DMSetRefineLevel(DM dm,PetscInt level) 2385fef3a512SBarry Smith { 2386fef3a512SBarry Smith PetscFunctionBegin; 2387fef3a512SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2388fef3a512SBarry Smith dm->levelup = level; 2389fef3a512SBarry Smith PetscFunctionReturn(0); 2390fef3a512SBarry Smith } 2391fef3a512SBarry Smith 2392d410b0cfSMatthew G. Knepley /*@ 2393d410b0cfSMatthew G. Knepley DMExtrude - Extrude a DM object from a surface 2394d410b0cfSMatthew G. Knepley 2395d410b0cfSMatthew G. Knepley Collective on dm 2396d410b0cfSMatthew G. Knepley 2397f1a722f8SMatthew G. Knepley Input Parameters: 2398d410b0cfSMatthew G. Knepley + dm - the DM object 2399d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2400d410b0cfSMatthew G. Knepley 2401d410b0cfSMatthew G. Knepley Output Parameter: 2402d410b0cfSMatthew G. Knepley . dme - the extruded DM, or NULL 2403d410b0cfSMatthew G. Knepley 2404d410b0cfSMatthew G. Knepley Note: If no extrusion was done, the return value is NULL 2405d410b0cfSMatthew G. Knepley 2406d410b0cfSMatthew G. Knepley Level: developer 2407d410b0cfSMatthew G. Knepley 2408db781477SPatrick Sanan .seealso `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2409d410b0cfSMatthew G. Knepley @*/ 2410d410b0cfSMatthew G. Knepley PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2411d410b0cfSMatthew G. Knepley { 2412d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2413d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24147a8be351SBarry Smith PetscCheck(dm->ops->extrude,PetscObjectComm((PetscObject) dm), PETSC_ERR_SUP, "DM type %s does not implement DMExtrude", ((PetscObject) dm)->type_name); 24159566063dSJacob Faibussowitsch PetscCall((*dm->ops->extrude)(dm, layers, dme)); 2416d410b0cfSMatthew G. Knepley if (*dme) { 2417d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 24189566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject) dm, (PetscObject) *dme)); 2419d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 24209566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2421d410b0cfSMatthew G. Knepley } 2422d410b0cfSMatthew G. Knepley PetscFunctionReturn(0); 2423d410b0cfSMatthew G. Knepley } 2424d410b0cfSMatthew G. Knepley 2425ca3d3a14SMatthew G. Knepley PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2426ca3d3a14SMatthew G. Knepley { 2427ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2428ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2429ca3d3a14SMatthew G. Knepley PetscValidPointer(tdm, 2); 2430ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 2431ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2432ca3d3a14SMatthew G. Knepley } 2433ca3d3a14SMatthew G. Knepley 2434ca3d3a14SMatthew G. Knepley PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2435ca3d3a14SMatthew G. Knepley { 2436ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2437ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2438ca3d3a14SMatthew G. Knepley PetscValidPointer(tv, 2); 2439ca3d3a14SMatthew G. Knepley *tv = dm->transform; 2440ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2441ca3d3a14SMatthew G. Knepley } 2442ca3d3a14SMatthew G. Knepley 2443ca3d3a14SMatthew G. Knepley /*@ 2444c0f8e1fdSMatthew G. Knepley DMHasBasisTransform - Whether we employ a basis transformation from functions in global vectors to functions in local vectors 2445ca3d3a14SMatthew G. Knepley 2446ca3d3a14SMatthew G. Knepley Input Parameter: 2447ca3d3a14SMatthew G. Knepley . dm - The DM 2448ca3d3a14SMatthew G. Knepley 2449ca3d3a14SMatthew G. Knepley Output Parameter: 2450ca3d3a14SMatthew G. Knepley . flg - PETSC_TRUE if a basis transformation should be done 2451ca3d3a14SMatthew G. Knepley 2452ca3d3a14SMatthew G. Knepley Level: developer 2453ca3d3a14SMatthew G. Knepley 2454db781477SPatrick Sanan .seealso: `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2455ca3d3a14SMatthew G. Knepley @*/ 2456ca3d3a14SMatthew G. Knepley PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2457ca3d3a14SMatthew G. Knepley { 2458ca3d3a14SMatthew G. Knepley Vec tv; 2459ca3d3a14SMatthew G. Knepley 2460ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2461ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2462534a8f05SLisandro Dalcin PetscValidBoolPointer(flg, 2); 24639566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2464ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 2465ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2466ca3d3a14SMatthew G. Knepley } 2467ca3d3a14SMatthew G. Knepley 2468ca3d3a14SMatthew G. Knepley PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2469ca3d3a14SMatthew G. Knepley { 2470ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2471ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2472ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2473ca3d3a14SMatthew G. Knepley 2474ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 24759566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 24769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 24779566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 24789566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 24799566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 24809566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 24819566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 24829566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2483ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 24849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2485ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2486ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2487ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 24889566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2489ca3d3a14SMatthew G. Knepley if (!dof) continue; 24909566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 24919566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2492ca3d3a14SMatthew G. Knepley } 2493ca3d3a14SMatthew G. Knepley } 24949566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 24959566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 24969566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2497ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2498ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 24999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2500ca3d3a14SMatthew G. Knepley if (dof) { 2501ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2502ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2503ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2504ca3d3a14SMatthew G. Knepley 2505ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 25069566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 25079566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *) &tva)); 25089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2509ca3d3a14SMatthew G. Knepley } 2510ca3d3a14SMatthew G. Knepley } 2511ca3d3a14SMatthew G. Knepley } 25129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 2513ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2514ca3d3a14SMatthew G. Knepley } 2515ca3d3a14SMatthew G. Knepley 2516ca3d3a14SMatthew G. Knepley PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2517ca3d3a14SMatthew G. Knepley { 2518ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2519ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2520ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2521ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2522ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2523ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2524ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 25259566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 2526ca3d3a14SMatthew G. Knepley PetscFunctionReturn(0); 2527ca3d3a14SMatthew G. Knepley } 2528ca3d3a14SMatthew G. Knepley 2529bb9467b5SJed Brown /*@C 2530baf369e7SPeter Brune DMGlobalToLocalHookAdd - adds a callback to be run when global to local is called 2531baf369e7SPeter Brune 2532baf369e7SPeter Brune Logically Collective 2533baf369e7SPeter Brune 25344165533cSJose E. Roman Input Parameters: 2535baf369e7SPeter Brune + dm - the DM 2536baf369e7SPeter Brune . beginhook - function to run at the beginning of DMGlobalToLocalBegin() 2537baf369e7SPeter Brune . endhook - function to run after DMGlobalToLocalEnd() has completed 25380298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2539baf369e7SPeter Brune 2540baf369e7SPeter Brune Calling sequence for beginhook: 2541baf369e7SPeter Brune $ beginhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2542baf369e7SPeter Brune 2543baf369e7SPeter Brune + dm - global DM 2544baf369e7SPeter Brune . g - global vector 2545baf369e7SPeter Brune . mode - mode 2546baf369e7SPeter Brune . l - local vector 2547baf369e7SPeter Brune - ctx - optional user-defined function context 2548baf369e7SPeter Brune 2549baf369e7SPeter Brune Calling sequence for endhook: 2550ec4806b8SPeter Brune $ endhook(DM fine,VecScatter out,VecScatter in,DM coarse,void *ctx) 2551baf369e7SPeter Brune 2552baf369e7SPeter Brune + global - global DM 2553baf369e7SPeter Brune - ctx - optional user-defined function context 2554baf369e7SPeter Brune 2555baf369e7SPeter Brune Level: advanced 2556baf369e7SPeter Brune 2557db781477SPatrick Sanan .seealso: `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2558baf369e7SPeter Brune @*/ 2559baf369e7SPeter Brune PetscErrorCode DMGlobalToLocalHookAdd(DM dm,PetscErrorCode (*beginhook)(DM,Vec,InsertMode,Vec,void*),PetscErrorCode (*endhook)(DM,Vec,InsertMode,Vec,void*),void *ctx) 2560baf369e7SPeter Brune { 2561baf369e7SPeter Brune DMGlobalToLocalHookLink link,*p; 2562baf369e7SPeter Brune 2563baf369e7SPeter Brune PetscFunctionBegin; 2564baf369e7SPeter Brune PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2565baf369e7SPeter Brune for (p=&dm->gtolhook; *p; p=&(*p)->next) {} /* Scan to the end of the current list of hooks */ 25669566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2567baf369e7SPeter Brune link->beginhook = beginhook; 2568baf369e7SPeter Brune link->endhook = endhook; 2569baf369e7SPeter Brune link->ctx = ctx; 25700298fd71SBarry Smith link->next = NULL; 2571baf369e7SPeter Brune *p = link; 2572baf369e7SPeter Brune PetscFunctionReturn(0); 2573baf369e7SPeter Brune } 2574baf369e7SPeter Brune 25754c274da1SToby Isaac static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 25764c274da1SToby Isaac { 25774c274da1SToby Isaac Mat cMat; 257879769bd5SJed Brown Vec cVec, cBias; 25794c274da1SToby Isaac PetscSection section, cSec; 25804c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 25814c274da1SToby Isaac 25824c274da1SToby Isaac PetscFunctionBegin; 25834c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25849566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm,&cSec,&cMat,&cBias)); 25854c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 25865db9a05bSToby Isaac PetscInt nRows; 25875db9a05bSToby Isaac 25889566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat,&nRows,NULL)); 25895db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 25909566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 25919566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat,NULL,&cVec)); 25929566063dSJacob Faibussowitsch PetscCall(MatMult(cMat,l,cVec)); 25939566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec,1.,cBias)); 25949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec,&pStart,&pEnd)); 25954c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 25969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 25974c274da1SToby Isaac if (dof) { 25984c274da1SToby Isaac PetscScalar *vals; 25999566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec,cSec,p,&vals)); 26009566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l,section,p,vals,INSERT_ALL_VALUES)); 26014c274da1SToby Isaac } 26024c274da1SToby Isaac } 26039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 26044c274da1SToby Isaac } 26054c274da1SToby Isaac PetscFunctionReturn(0); 26064c274da1SToby Isaac } 26074c274da1SToby Isaac 260847c6ae99SBarry Smith /*@ 260901729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 261001729b5cSPatrick Sanan 2611d083f849SBarry Smith Neighbor-wise Collective on dm 261201729b5cSPatrick Sanan 261301729b5cSPatrick Sanan Input Parameters: 261401729b5cSPatrick Sanan + dm - the DM object 261501729b5cSPatrick Sanan . g - the global vector 261601729b5cSPatrick Sanan . mode - INSERT_VALUES or ADD_VALUES 261701729b5cSPatrick Sanan - l - the local vector 261801729b5cSPatrick Sanan 261901729b5cSPatrick Sanan Notes: 262001729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 262101729b5cSPatrick Sanan DMGlobalToLocalBegin() and DMGlobalToLocalEnd(). 262201729b5cSPatrick Sanan 262301729b5cSPatrick Sanan Level: beginner 262401729b5cSPatrick Sanan 2625db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 262601729b5cSPatrick Sanan 262701729b5cSPatrick Sanan @*/ 262801729b5cSPatrick Sanan PetscErrorCode DMGlobalToLocal(DM dm,Vec g,InsertMode mode,Vec l) 262901729b5cSPatrick Sanan { 263001729b5cSPatrick Sanan PetscFunctionBegin; 26319566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm,g,mode,l)); 26329566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm,g,mode,l)); 263301729b5cSPatrick Sanan PetscFunctionReturn(0); 263401729b5cSPatrick Sanan } 263501729b5cSPatrick Sanan 263601729b5cSPatrick Sanan /*@ 263747c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 263847c6ae99SBarry Smith 2639d083f849SBarry Smith Neighbor-wise Collective on dm 264047c6ae99SBarry Smith 264147c6ae99SBarry Smith Input Parameters: 264247c6ae99SBarry Smith + dm - the DM object 264347c6ae99SBarry Smith . g - the global vector 264447c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 264547c6ae99SBarry Smith - l - the local vector 264647c6ae99SBarry Smith 264701729b5cSPatrick Sanan Level: intermediate 264847c6ae99SBarry Smith 2649db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 265047c6ae99SBarry Smith 265147c6ae99SBarry Smith @*/ 26527087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalBegin(DM dm,Vec g,InsertMode mode,Vec l) 265347c6ae99SBarry Smith { 26547128ae9fSMatthew G Knepley PetscSF sf; 2655baf369e7SPeter Brune DMGlobalToLocalHookLink link; 265647c6ae99SBarry Smith 265747c6ae99SBarry Smith PetscFunctionBegin; 2658171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2659baf369e7SPeter Brune for (link=dm->gtolhook; link; link=link->next) { 26601baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm,g,mode,l,link->ctx)); 2661baf369e7SPeter Brune } 26629566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 26637128ae9fSMatthew G Knepley if (sf) { 2664ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2665ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2666d0295fc0SJunchao Zhang PetscMemType lmtype,gmtype; 26677128ae9fSMatthew G Knepley 26687a8be351SBarry Smith PetscCheck(mode != ADD_VALUES,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 26699566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 26709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 26719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 26729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 26739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 26747128ae9fSMatthew G Knepley } else { 26757a8be351SBarry Smith PetscCheck(dm->ops->globaltolocalbegin,PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing DMGlobalToLocalBegin() for type %s",((PetscObject)dm)->type_name); 26769566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalbegin)(dm,g,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),l)); 26777128ae9fSMatthew G Knepley } 267847c6ae99SBarry Smith PetscFunctionReturn(0); 267947c6ae99SBarry Smith } 268047c6ae99SBarry Smith 268147c6ae99SBarry Smith /*@ 268247c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 268347c6ae99SBarry Smith 2684d083f849SBarry Smith Neighbor-wise Collective on dm 268547c6ae99SBarry Smith 268647c6ae99SBarry Smith Input Parameters: 268747c6ae99SBarry Smith + dm - the DM object 268847c6ae99SBarry Smith . g - the global vector 268947c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 269047c6ae99SBarry Smith - l - the local vector 269147c6ae99SBarry Smith 269201729b5cSPatrick Sanan Level: intermediate 269347c6ae99SBarry Smith 2694db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()` 269547c6ae99SBarry Smith 269647c6ae99SBarry Smith @*/ 26977087cfbeSBarry Smith PetscErrorCode DMGlobalToLocalEnd(DM dm,Vec g,InsertMode mode,Vec l) 269847c6ae99SBarry Smith { 26997128ae9fSMatthew G Knepley PetscSF sf; 2700ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2701ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2702ca3d3a14SMatthew G. Knepley PetscBool transform; 2703baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2704d0295fc0SJunchao Zhang PetscMemType lmtype,gmtype; 270547c6ae99SBarry Smith 270647c6ae99SBarry Smith PetscFunctionBegin; 2707171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 27089566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 27099566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 27107128ae9fSMatthew G Knepley if (sf) { 27117a8be351SBarry Smith PetscCheck(mode != ADD_VALUES,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 27127128ae9fSMatthew G Knepley 27139566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 27149566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 27159566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray,MPI_REPLACE)); 27169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 27179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 27189566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 27197128ae9fSMatthew G Knepley } else { 27207a8be351SBarry Smith PetscCheck(dm->ops->globaltolocalend,PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing DMGlobalToLocalEnd() for type %s",((PetscObject)dm)->type_name); 27219566063dSJacob Faibussowitsch PetscCall((*dm->ops->globaltolocalend)(dm,g,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),l)); 27227128ae9fSMatthew G Knepley } 27239566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm,g,mode,l,NULL)); 2724baf369e7SPeter Brune for (link=dm->gtolhook; link; link=link->next) { 27259566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm,g,mode,l,link->ctx)); 2726baf369e7SPeter Brune } 272747c6ae99SBarry Smith PetscFunctionReturn(0); 272847c6ae99SBarry Smith } 272947c6ae99SBarry Smith 2730d4d07f1eSToby Isaac /*@C 2731d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2732d4d07f1eSToby Isaac 2733d4d07f1eSToby Isaac Logically Collective 2734d4d07f1eSToby Isaac 27354165533cSJose E. Roman Input Parameters: 2736d4d07f1eSToby Isaac + dm - the DM 2737d4d07f1eSToby Isaac . beginhook - function to run at the beginning of DMLocalToGlobalBegin() 2738d4d07f1eSToby Isaac . endhook - function to run after DMLocalToGlobalEnd() has completed 2739d4d07f1eSToby Isaac - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 2740d4d07f1eSToby Isaac 2741d4d07f1eSToby Isaac Calling sequence for beginhook: 2742d4d07f1eSToby Isaac $ beginhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2743d4d07f1eSToby Isaac 2744d4d07f1eSToby Isaac + dm - global DM 2745d4d07f1eSToby Isaac . l - local vector 2746d4d07f1eSToby Isaac . mode - mode 2747d4d07f1eSToby Isaac . g - global vector 2748d4d07f1eSToby Isaac - ctx - optional user-defined function context 2749d4d07f1eSToby Isaac 2750d4d07f1eSToby Isaac Calling sequence for endhook: 2751d4d07f1eSToby Isaac $ endhook(DM fine,Vec l,InsertMode mode,Vec g,void *ctx) 2752d4d07f1eSToby Isaac 2753d4d07f1eSToby Isaac + global - global DM 2754d4d07f1eSToby Isaac . l - local vector 2755d4d07f1eSToby Isaac . mode - mode 2756d4d07f1eSToby Isaac . g - global vector 2757d4d07f1eSToby Isaac - ctx - optional user-defined function context 2758d4d07f1eSToby Isaac 2759d4d07f1eSToby Isaac Level: advanced 2760d4d07f1eSToby Isaac 2761db781477SPatrick Sanan .seealso: `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2762d4d07f1eSToby Isaac @*/ 2763d4d07f1eSToby Isaac PetscErrorCode DMLocalToGlobalHookAdd(DM dm,PetscErrorCode (*beginhook)(DM,Vec,InsertMode,Vec,void*),PetscErrorCode (*endhook)(DM,Vec,InsertMode,Vec,void*),void *ctx) 2764d4d07f1eSToby Isaac { 2765d4d07f1eSToby Isaac DMLocalToGlobalHookLink link,*p; 2766d4d07f1eSToby Isaac 2767d4d07f1eSToby Isaac PetscFunctionBegin; 2768d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2769d4d07f1eSToby Isaac for (p=&dm->ltoghook; *p; p=&(*p)->next) {} /* Scan to the end of the current list of hooks */ 27709566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2771d4d07f1eSToby Isaac link->beginhook = beginhook; 2772d4d07f1eSToby Isaac link->endhook = endhook; 2773d4d07f1eSToby Isaac link->ctx = ctx; 2774d4d07f1eSToby Isaac link->next = NULL; 2775d4d07f1eSToby Isaac *p = link; 2776d4d07f1eSToby Isaac PetscFunctionReturn(0); 2777d4d07f1eSToby Isaac } 2778d4d07f1eSToby Isaac 27794c274da1SToby Isaac static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 27804c274da1SToby Isaac { 27814c274da1SToby Isaac Mat cMat; 27824c274da1SToby Isaac Vec cVec; 27834c274da1SToby Isaac PetscSection section, cSec; 27844c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27854c274da1SToby Isaac 27864c274da1SToby Isaac PetscFunctionBegin; 27874c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27889566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm,&cSec,&cMat,NULL)); 27894c274da1SToby Isaac if (cMat && (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES)) { 27905db9a05bSToby Isaac PetscInt nRows; 27915db9a05bSToby Isaac 27929566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat,&nRows,NULL)); 27935db9a05bSToby Isaac if (nRows <= 0) PetscFunctionReturn(0); 27949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,§ion)); 27959566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat,NULL,&cVec)); 27969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec,&pStart,&pEnd)); 27974c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec,p,&dof)); 27994c274da1SToby Isaac if (dof) { 28004c274da1SToby Isaac PetscInt d; 28014c274da1SToby Isaac PetscScalar *vals; 28029566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l,section,p,&vals)); 28039566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec,cSec,p,vals,mode)); 28044c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 28054c274da1SToby Isaac * we just extracted */ 28064c274da1SToby Isaac for (d = 0; d < dof; d++) { 28074c274da1SToby Isaac vals[d] = 0.; 28084c274da1SToby Isaac } 28094c274da1SToby Isaac } 28104c274da1SToby Isaac } 28119566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat,cVec,l,l)); 28129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 28134c274da1SToby Isaac } 28144c274da1SToby Isaac PetscFunctionReturn(0); 28154c274da1SToby Isaac } 281601729b5cSPatrick Sanan /*@ 281701729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 281801729b5cSPatrick Sanan 2819d083f849SBarry Smith Neighbor-wise Collective on dm 282001729b5cSPatrick Sanan 282101729b5cSPatrick Sanan Input Parameters: 282201729b5cSPatrick Sanan + dm - the DM object 282301729b5cSPatrick Sanan . l - the local vector 282401729b5cSPatrick Sanan . mode - if INSERT_VALUES then no parallel communication is used, if ADD_VALUES then all ghost points from the same base point accumulate into that base point. 282501729b5cSPatrick Sanan - g - the global vector 282601729b5cSPatrick Sanan 282701729b5cSPatrick Sanan Notes: 282801729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 282901729b5cSPatrick Sanan DMLocalToGlobalBegin() and DMLocalToGlobalEnd(). 283001729b5cSPatrick Sanan 283101729b5cSPatrick Sanan In the ADD_VALUES case you normally would zero the receiving vector before beginning this operation. 283201729b5cSPatrick Sanan INSERT_VALUES is not supported for DMDA; in that case simply compute the values directly into a global vector instead of a local one. 283301729b5cSPatrick Sanan 283401729b5cSPatrick Sanan Level: beginner 283501729b5cSPatrick Sanan 2836db781477SPatrick Sanan .seealso `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 283701729b5cSPatrick Sanan 283801729b5cSPatrick Sanan @*/ 283901729b5cSPatrick Sanan PetscErrorCode DMLocalToGlobal(DM dm,Vec l,InsertMode mode,Vec g) 284001729b5cSPatrick Sanan { 284101729b5cSPatrick Sanan PetscFunctionBegin; 28429566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm,l,mode,g)); 28439566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm,l,mode,g)); 284401729b5cSPatrick Sanan PetscFunctionReturn(0); 284501729b5cSPatrick Sanan } 28464c274da1SToby Isaac 284747c6ae99SBarry Smith /*@ 284801729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 28499a42bb27SBarry Smith 2850d083f849SBarry Smith Neighbor-wise Collective on dm 28519a42bb27SBarry Smith 28529a42bb27SBarry Smith Input Parameters: 28539a42bb27SBarry Smith + dm - the DM object 2854f6813fd5SJed Brown . l - the local vector 28551eb28f2eSBarry Smith . mode - if INSERT_VALUES then no parallel communication is used, if ADD_VALUES then all ghost points from the same base point accumulate into that base point. 28561eb28f2eSBarry Smith - g - the global vector 28579a42bb27SBarry Smith 285895452b02SPatrick Sanan Notes: 285995452b02SPatrick Sanan In the ADD_VALUES case you normally would zero the receiving vector before beginning this operation. 286084330215SMatthew G. Knepley INSERT_VALUES is not supported for DMDA, in that case simply compute the values directly into a global vector instead of a local one. 28619a42bb27SBarry Smith 286201729b5cSPatrick Sanan Level: intermediate 28639a42bb27SBarry Smith 2864db781477SPatrick Sanan .seealso `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 28659a42bb27SBarry Smith 28669a42bb27SBarry Smith @*/ 28677087cfbeSBarry Smith PetscErrorCode DMLocalToGlobalBegin(DM dm,Vec l,InsertMode mode,Vec g) 28689a42bb27SBarry Smith { 28697128ae9fSMatthew G Knepley PetscSF sf; 287084330215SMatthew G. Knepley PetscSection s, gs; 2871d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 2872ca3d3a14SMatthew G. Knepley Vec tmpl; 2873ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 2874ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 2875fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 2876d0295fc0SJunchao Zhang PetscMemType lmtype=PETSC_MEMTYPE_HOST,gmtype=PETSC_MEMTYPE_HOST; 28779a42bb27SBarry Smith 28789a42bb27SBarry Smith PetscFunctionBegin; 2879171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 2880d4d07f1eSToby Isaac for (link=dm->ltoghook; link; link=link->next) { 28811baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm,l,mode,g,link->ctx)); 2882d4d07f1eSToby Isaac } 28839566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm,l,mode,g,NULL)); 28849566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28859566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 28867128ae9fSMatthew G Knepley switch (mode) { 28877128ae9fSMatthew G Knepley case INSERT_VALUES: 28887128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 2889304ab55fSMatthew G. Knepley case INSERT_BC_VALUES: 289084330215SMatthew G. Knepley isInsert = PETSC_TRUE; break; 28917128ae9fSMatthew G Knepley case ADD_VALUES: 28927128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 2893304ab55fSMatthew G. Knepley case ADD_BC_VALUES: 289484330215SMatthew G. Knepley isInsert = PETSC_FALSE; break; 28957128ae9fSMatthew G Knepley default: 289663a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 28977128ae9fSMatthew G Knepley } 2898ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 28999566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 2900ca3d3a14SMatthew G. Knepley if (transform) { 29019566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 29029566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 29039566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 29049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 2905fa88e482SJed Brown } else if (isInsert) { 29069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 2907fa88e482SJed Brown } else { 29089566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 2909fa88e482SJed Brown l_inplace = PETSC_TRUE; 2910ca3d3a14SMatthew G. Knepley } 2911fa88e482SJed Brown if (s && isInsert) { 29129566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 2913fa88e482SJed Brown } else { 29149566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 2915fa88e482SJed Brown g_inplace = PETSC_TRUE; 2916fa88e482SJed Brown } 2917ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 29189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 291984330215SMatthew G. Knepley } else if (s && isInsert) { 292084330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 292184330215SMatthew G. Knepley 29229566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 29239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 29249566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 292584330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2926b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 292784330215SMatthew G. Knepley 29289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 29299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 29309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 29319566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 29329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 29339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 2934b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 293503442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 29367a8be351SBarry Smith PetscCheck(dof == gdof,PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 2937b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 2938b3b16f48SMatthew G. Knepley if (!gcdof) { 293984330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff-gStart+d] = lArray[off+d]; 2940b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 2941b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 294284330215SMatthew G. Knepley const PetscInt *cdofs; 294384330215SMatthew G. Knepley PetscInt cind = 0; 294484330215SMatthew G. Knepley 29459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 2946b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 294784330215SMatthew G. Knepley if ((cind < cdof) && (d == cdofs[cind])) {++cind; continue;} 2948b3b16f48SMatthew G. Knepley gArray[goff-gStart+e++] = lArray[off+d]; 294984330215SMatthew G. Knepley } 29507a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 295184330215SMatthew G. Knepley } 2952ca3d3a14SMatthew G. Knepley } 2953fa88e482SJed Brown if (g_inplace) { 29549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 2955fa88e482SJed Brown } else { 29569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 2957fa88e482SJed Brown } 2958ca3d3a14SMatthew G. Knepley if (transform) { 29599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 29609566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 2961fa88e482SJed Brown } else if (l_inplace) { 29629566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 2963ca3d3a14SMatthew G. Knepley } else { 29649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 2965ca3d3a14SMatthew G. Knepley } 29667128ae9fSMatthew G Knepley } else { 29677a8be351SBarry Smith PetscCheck(dm->ops->localtoglobalbegin,PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing DMLocalToGlobalBegin() for type %s",((PetscObject)dm)->type_name); 29689566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalbegin)(dm,l,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),g)); 29697128ae9fSMatthew G Knepley } 29709a42bb27SBarry Smith PetscFunctionReturn(0); 29719a42bb27SBarry Smith } 29729a42bb27SBarry Smith 29739a42bb27SBarry Smith /*@ 29749a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 297547c6ae99SBarry Smith 2976d083f849SBarry Smith Neighbor-wise Collective on dm 297747c6ae99SBarry Smith 297847c6ae99SBarry Smith Input Parameters: 297947c6ae99SBarry Smith + dm - the DM object 2980f6813fd5SJed Brown . l - the local vector 298147c6ae99SBarry Smith . mode - INSERT_VALUES or ADD_VALUES 2982f6813fd5SJed Brown - g - the global vector 298347c6ae99SBarry Smith 298401729b5cSPatrick Sanan Level: intermediate 298547c6ae99SBarry Smith 2986db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalEnd()` 298747c6ae99SBarry Smith 298847c6ae99SBarry Smith @*/ 29897087cfbeSBarry Smith PetscErrorCode DMLocalToGlobalEnd(DM dm,Vec l,InsertMode mode,Vec g) 299047c6ae99SBarry Smith { 29917128ae9fSMatthew G Knepley PetscSF sf; 299284330215SMatthew G. Knepley PetscSection s; 2993d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 2994ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 299547c6ae99SBarry Smith 299647c6ae99SBarry Smith PetscFunctionBegin; 2997171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 29989566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 29999566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30007128ae9fSMatthew G Knepley switch (mode) { 30017128ae9fSMatthew G Knepley case INSERT_VALUES: 30027128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 300384330215SMatthew G. Knepley isInsert = PETSC_TRUE; break; 30047128ae9fSMatthew G Knepley case ADD_VALUES: 30057128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 300684330215SMatthew G. Knepley isInsert = PETSC_FALSE; break; 30077128ae9fSMatthew G Knepley default: 300863a3b9bcSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30097128ae9fSMatthew G Knepley } 301084330215SMatthew G. Knepley if (sf && !isInsert) { 3011ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3012ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3013ca3d3a14SMatthew G. Knepley Vec tmpl; 301484330215SMatthew G. Knepley 30159566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3016ca3d3a14SMatthew G. Knepley if (transform) { 30179566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30189566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3019ca3d3a14SMatthew G. Knepley } else { 30209566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3021ca3d3a14SMatthew G. Knepley } 30229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 30239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3024ca3d3a14SMatthew G. Knepley if (transform) { 30259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 30269566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3027ca3d3a14SMatthew G. Knepley } else { 30289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3029ca3d3a14SMatthew G. Knepley } 30309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 303184330215SMatthew G. Knepley } else if (s && isInsert) { 30327128ae9fSMatthew G Knepley } else { 30337a8be351SBarry Smith PetscCheck(dm->ops->localtoglobalend,PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "Missing DMLocalToGlobalEnd() for type %s",((PetscObject)dm)->type_name); 30349566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtoglobalend)(dm,l,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),g)); 30357128ae9fSMatthew G Knepley } 3036d4d07f1eSToby Isaac for (link=dm->ltoghook; link; link=link->next) { 30379566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm,g,mode,l,link->ctx)); 3038d4d07f1eSToby Isaac } 303947c6ae99SBarry Smith PetscFunctionReturn(0); 304047c6ae99SBarry Smith } 304147c6ae99SBarry Smith 3042f089877aSRichard Tran Mills /*@ 3043bc0a1609SRichard Tran Mills DMLocalToLocalBegin - Maps from a local vector (including ghost points 3044bc0a1609SRichard Tran Mills that contain irrelevant values) to another local vector where the ghost 3045d78e899eSRichard Tran Mills points in the second are set correctly. Must be followed by DMLocalToLocalEnd(). 3046f089877aSRichard Tran Mills 3047d083f849SBarry Smith Neighbor-wise Collective on dm 3048f089877aSRichard Tran Mills 3049f089877aSRichard Tran Mills Input Parameters: 3050f089877aSRichard Tran Mills + dm - the DM object 3051bc0a1609SRichard Tran Mills . g - the original local vector 3052bc0a1609SRichard Tran Mills - mode - one of INSERT_VALUES or ADD_VALUES 3053f089877aSRichard Tran Mills 3054bc0a1609SRichard Tran Mills Output Parameter: 3055bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3056f089877aSRichard Tran Mills 3057f089877aSRichard Tran Mills Level: intermediate 3058f089877aSRichard Tran Mills 3059bc0a1609SRichard Tran Mills Notes: 3060bc0a1609SRichard Tran Mills The local vectors used here need not be the same as those 3061bc0a1609SRichard Tran Mills obtained from DMCreateLocalVector(), BUT they 3062bc0a1609SRichard Tran Mills must have the same parallel data layout; they could, for example, be 3063bc0a1609SRichard Tran Mills obtained with VecDuplicate() from the DM originating vectors. 3064bc0a1609SRichard Tran Mills 3065db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalEnd()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3066f089877aSRichard Tran Mills 3067f089877aSRichard Tran Mills @*/ 3068f089877aSRichard Tran Mills PetscErrorCode DMLocalToLocalBegin(DM dm,Vec g,InsertMode mode,Vec l) 3069f089877aSRichard Tran Mills { 3070f089877aSRichard Tran Mills PetscFunctionBegin; 3071f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm,DM_CLASSID,1); 30727a8be351SBarry Smith PetscCheck(dm->ops->localtolocalbegin,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"This DM does not support local to local maps"); 30739566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtolocalbegin)(dm,g,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),l)); 3074f089877aSRichard Tran Mills PetscFunctionReturn(0); 3075f089877aSRichard Tran Mills } 3076f089877aSRichard Tran Mills 3077f089877aSRichard Tran Mills /*@ 3078bc0a1609SRichard Tran Mills DMLocalToLocalEnd - Maps from a local vector (including ghost points 3079bc0a1609SRichard Tran Mills that contain irrelevant values) to another local vector where the ghost 3080d78e899eSRichard Tran Mills points in the second are set correctly. Must be preceded by DMLocalToLocalBegin(). 3081f089877aSRichard Tran Mills 3082d083f849SBarry Smith Neighbor-wise Collective on dm 3083f089877aSRichard Tran Mills 3084f089877aSRichard Tran Mills Input Parameters: 3085bc0a1609SRichard Tran Mills + da - the DM object 3086bc0a1609SRichard Tran Mills . g - the original local vector 3087bc0a1609SRichard Tran Mills - mode - one of INSERT_VALUES or ADD_VALUES 3088f089877aSRichard Tran Mills 3089bc0a1609SRichard Tran Mills Output Parameter: 3090bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3091f089877aSRichard Tran Mills 3092f089877aSRichard Tran Mills Level: intermediate 3093f089877aSRichard Tran Mills 3094bc0a1609SRichard Tran Mills Notes: 3095bc0a1609SRichard Tran Mills The local vectors used here need not be the same as those 3096bc0a1609SRichard Tran Mills obtained from DMCreateLocalVector(), BUT they 3097bc0a1609SRichard Tran Mills must have the same parallel data layout; they could, for example, be 3098bc0a1609SRichard Tran Mills obtained with VecDuplicate() from the DM originating vectors. 3099bc0a1609SRichard Tran Mills 3100db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMLocalToLocalBegin()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3101f089877aSRichard Tran Mills 3102f089877aSRichard Tran Mills @*/ 3103f089877aSRichard Tran Mills PetscErrorCode DMLocalToLocalEnd(DM dm,Vec g,InsertMode mode,Vec l) 3104f089877aSRichard Tran Mills { 3105f089877aSRichard Tran Mills PetscFunctionBegin; 3106f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm,DM_CLASSID,1); 31077a8be351SBarry Smith PetscCheck(dm->ops->localtolocalend,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"This DM does not support local to local maps"); 31089566063dSJacob Faibussowitsch PetscCall((*dm->ops->localtolocalend)(dm,g,mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode),l)); 3109f089877aSRichard Tran Mills PetscFunctionReturn(0); 3110f089877aSRichard Tran Mills } 3111f089877aSRichard Tran Mills 311247c6ae99SBarry Smith /*@ 311347c6ae99SBarry Smith DMCoarsen - Coarsens a DM object 311447c6ae99SBarry Smith 3115d083f849SBarry Smith Collective on dm 311647c6ae99SBarry Smith 3117d8d19677SJose E. Roman Input Parameters: 311847c6ae99SBarry Smith + dm - the DM object 311991d95f02SJed Brown - comm - the communicator to contain the new DM object (or MPI_COMM_NULL) 312047c6ae99SBarry Smith 312147c6ae99SBarry Smith Output Parameter: 312247c6ae99SBarry Smith . dmc - the coarsened DM 312347c6ae99SBarry Smith 312447c6ae99SBarry Smith Level: developer 312547c6ae99SBarry Smith 3126db781477SPatrick Sanan .seealso `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 312747c6ae99SBarry Smith 312847c6ae99SBarry Smith @*/ 31297087cfbeSBarry Smith PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 313047c6ae99SBarry Smith { 3131b17ce1afSJed Brown DMCoarsenHookLink link; 313247c6ae99SBarry Smith 313347c6ae99SBarry Smith PetscFunctionBegin; 3134171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 31357a8be351SBarry Smith PetscCheck(dm->ops->coarsen,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMCoarsen",((PetscObject)dm)->type_name); 31369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen,dm,0,0,0)); 31379566063dSJacob Faibussowitsch PetscCall((*dm->ops->coarsen)(dm, comm, dmc)); 3138b9d85ea2SLisandro Dalcin if (*dmc) { 3139a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 31409566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm,*dmc)); 314143842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 31429566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm,(PetscObject)*dmc)); 3143644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 31440598a293SJed Brown (*dmc)->levelup = dm->levelup; 3145656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 31469566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc,dm->mattype)); 3147b17ce1afSJed Brown for (link=dm->coarsenhook; link; link=link->next) { 31489566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm,*dmc,link->ctx)); 3149b17ce1afSJed Brown } 3150b9d85ea2SLisandro Dalcin } 31519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen,dm,0,0,0)); 31527a8be351SBarry Smith PetscCheck(*dmc,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 3153b17ce1afSJed Brown PetscFunctionReturn(0); 3154b17ce1afSJed Brown } 3155b17ce1afSJed Brown 3156bb9467b5SJed Brown /*@C 3157b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3158b17ce1afSJed Brown 3159b17ce1afSJed Brown Logically Collective 3160b17ce1afSJed Brown 31614165533cSJose E. Roman Input Parameters: 3162b17ce1afSJed Brown + fine - nonlinear solver context on which to run a hook when restricting to a coarser level 3163b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3164b17ce1afSJed Brown . restricthook - function to run to update data on coarser levels (once per SNESSolve()) 31650298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3166b17ce1afSJed Brown 3167b17ce1afSJed Brown Calling sequence of coarsenhook: 3168b17ce1afSJed Brown $ coarsenhook(DM fine,DM coarse,void *ctx); 3169b17ce1afSJed Brown 3170b17ce1afSJed Brown + fine - fine level DM 3171b17ce1afSJed Brown . coarse - coarse level DM to restrict problem to 3172b17ce1afSJed Brown - ctx - optional user-defined function context 3173b17ce1afSJed Brown 3174b17ce1afSJed Brown Calling sequence for restricthook: 3175c833c3b5SJed Brown $ restricthook(DM fine,Mat mrestrict,Vec rscale,Mat inject,DM coarse,void *ctx) 3176b17ce1afSJed Brown 3177b17ce1afSJed Brown + fine - fine level DM 3178b17ce1afSJed Brown . mrestrict - matrix restricting a fine-level solution to the coarse grid 3179c833c3b5SJed Brown . rscale - scaling vector for restriction 3180c833c3b5SJed Brown . inject - matrix restricting by injection 3181b17ce1afSJed Brown . coarse - coarse level DM to update 3182b17ce1afSJed Brown - ctx - optional user-defined function context 3183b17ce1afSJed Brown 3184b17ce1afSJed Brown Level: advanced 3185b17ce1afSJed Brown 3186b17ce1afSJed Brown Notes: 3187b17ce1afSJed Brown This function is only needed if auxiliary data needs to be set up on coarse grids. 3188b17ce1afSJed Brown 3189b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3190b17ce1afSJed Brown 3191b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3192b17ce1afSJed Brown extract the finest level information from its context (instead of from the SNES). 3193b17ce1afSJed Brown 3194bb9467b5SJed Brown This function is currently not available from Fortran. 3195bb9467b5SJed Brown 3196db781477SPatrick Sanan .seealso: `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3197b17ce1afSJed Brown @*/ 3198b17ce1afSJed Brown PetscErrorCode DMCoarsenHookAdd(DM fine,PetscErrorCode (*coarsenhook)(DM,DM,void*),PetscErrorCode (*restricthook)(DM,Mat,Vec,Mat,DM,void*),void *ctx) 3199b17ce1afSJed Brown { 3200b17ce1afSJed Brown DMCoarsenHookLink link,*p; 3201b17ce1afSJed Brown 3202b17ce1afSJed Brown PetscFunctionBegin; 3203b17ce1afSJed Brown PetscValidHeaderSpecific(fine,DM_CLASSID,1); 32041e3d8eccSJed Brown for (p=&fine->coarsenhook; *p; p=&(*p)->next) { /* Scan to the end of the current list of hooks */ 32051e3d8eccSJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 32061e3d8eccSJed Brown } 32079566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3208b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3209b17ce1afSJed Brown link->restricthook = restricthook; 3210b17ce1afSJed Brown link->ctx = ctx; 32110298fd71SBarry Smith link->next = NULL; 3212b17ce1afSJed Brown *p = link; 3213b17ce1afSJed Brown PetscFunctionReturn(0); 3214b17ce1afSJed Brown } 3215b17ce1afSJed Brown 3216dc822a44SJed Brown /*@C 3217dc822a44SJed Brown DMCoarsenHookRemove - remove a callback from the list of hooks to be run when restricting a nonlinear problem to the coarse grid 3218dc822a44SJed Brown 3219dc822a44SJed Brown Logically Collective 3220dc822a44SJed Brown 32214165533cSJose E. Roman Input Parameters: 3222dc822a44SJed Brown + fine - nonlinear solver context on which to run a hook when restricting to a coarser level 3223dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3224dc822a44SJed Brown . restricthook - function to run to update data on coarser levels (once per SNESSolve()) 3225dc822a44SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3226dc822a44SJed Brown 3227dc822a44SJed Brown Level: advanced 3228dc822a44SJed Brown 3229dc822a44SJed Brown Notes: 3230dc822a44SJed Brown This function does nothing if the hook is not in the list. 3231dc822a44SJed Brown 3232dc822a44SJed Brown This function is currently not available from Fortran. 3233dc822a44SJed Brown 3234db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3235dc822a44SJed Brown @*/ 3236dc822a44SJed Brown PetscErrorCode DMCoarsenHookRemove(DM fine,PetscErrorCode (*coarsenhook)(DM,DM,void*),PetscErrorCode (*restricthook)(DM,Mat,Vec,Mat,DM,void*),void *ctx) 3237dc822a44SJed Brown { 3238dc822a44SJed Brown DMCoarsenHookLink link,*p; 3239dc822a44SJed Brown 3240dc822a44SJed Brown PetscFunctionBegin; 3241dc822a44SJed Brown PetscValidHeaderSpecific(fine,DM_CLASSID,1); 3242dc822a44SJed Brown for (p=&fine->coarsenhook; *p; p=&(*p)->next) { /* Search the list of current hooks */ 3243dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3244dc822a44SJed Brown link = *p; 3245dc822a44SJed Brown *p = link->next; 32469566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3247dc822a44SJed Brown break; 3248dc822a44SJed Brown } 3249dc822a44SJed Brown } 3250dc822a44SJed Brown PetscFunctionReturn(0); 3251dc822a44SJed Brown } 3252dc822a44SJed Brown 3253b17ce1afSJed Brown /*@ 3254b17ce1afSJed Brown DMRestrict - restricts user-defined problem data to a coarser DM by running hooks registered by DMCoarsenHookAdd() 3255b17ce1afSJed Brown 3256b17ce1afSJed Brown Collective if any hooks are 3257b17ce1afSJed Brown 32584165533cSJose E. Roman Input Parameters: 3259b17ce1afSJed Brown + fine - finer DM to use as a base 3260b17ce1afSJed Brown . restrct - restriction matrix, apply using MatRestrict() 3261e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3262b17ce1afSJed Brown . inject - injection matrix, also use MatRestrict() 3263e91eccc2SStefano Zampini - coarse - coarser DM to update 3264b17ce1afSJed Brown 3265b17ce1afSJed Brown Level: developer 3266b17ce1afSJed Brown 3267db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `MatRestrict()` 3268b17ce1afSJed Brown @*/ 3269b17ce1afSJed Brown PetscErrorCode DMRestrict(DM fine,Mat restrct,Vec rscale,Mat inject,DM coarse) 3270b17ce1afSJed Brown { 3271b17ce1afSJed Brown DMCoarsenHookLink link; 3272b17ce1afSJed Brown 3273b17ce1afSJed Brown PetscFunctionBegin; 3274b17ce1afSJed Brown for (link=fine->coarsenhook; link; link=link->next) { 32751baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine,restrct,rscale,inject,coarse,link->ctx)); 3276b17ce1afSJed Brown } 327747c6ae99SBarry Smith PetscFunctionReturn(0); 327847c6ae99SBarry Smith } 327947c6ae99SBarry Smith 3280bb9467b5SJed Brown /*@C 3281be081cd6SPeter Brune DMSubDomainHookAdd - adds a callback to be run when restricting a problem to the coarse grid 32825dbd56e3SPeter Brune 3283d083f849SBarry Smith Logically Collective on global 32845dbd56e3SPeter Brune 32854165533cSJose E. Roman Input Parameters: 32865dbd56e3SPeter Brune + global - global DM 3287ec4806b8SPeter Brune . ddhook - function to run to pass data to the decomposition DM upon its creation 32885dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 32890298fd71SBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 32905dbd56e3SPeter Brune 3291ec4806b8SPeter Brune Calling sequence for ddhook: 3292ec4806b8SPeter Brune $ ddhook(DM global,DM block,void *ctx) 3293ec4806b8SPeter Brune 3294ec4806b8SPeter Brune + global - global DM 3295ec4806b8SPeter Brune . block - block DM 3296ec4806b8SPeter Brune - ctx - optional user-defined function context 3297ec4806b8SPeter Brune 32985dbd56e3SPeter Brune Calling sequence for restricthook: 3299ec4806b8SPeter Brune $ restricthook(DM global,VecScatter out,VecScatter in,DM block,void *ctx) 33005dbd56e3SPeter Brune 33015dbd56e3SPeter Brune + global - global DM 33025dbd56e3SPeter Brune . out - scatter to the outer (with ghost and overlap points) block vector 33035dbd56e3SPeter Brune . in - scatter to block vector values only owned locally 3304ec4806b8SPeter Brune . block - block DM 33055dbd56e3SPeter Brune - ctx - optional user-defined function context 33065dbd56e3SPeter Brune 33075dbd56e3SPeter Brune Level: advanced 33085dbd56e3SPeter Brune 33095dbd56e3SPeter Brune Notes: 3310ec4806b8SPeter Brune This function is only needed if auxiliary data needs to be set up on subdomain DMs. 33115dbd56e3SPeter Brune 33125dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 33135dbd56e3SPeter Brune 33145dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3315ec4806b8SPeter Brune extract the global information from its context (instead of from the SNES). 33165dbd56e3SPeter Brune 3317bb9467b5SJed Brown This function is currently not available from Fortran. 3318bb9467b5SJed Brown 3319db781477SPatrick Sanan .seealso: `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 33205dbd56e3SPeter Brune @*/ 3321be081cd6SPeter Brune PetscErrorCode DMSubDomainHookAdd(DM global,PetscErrorCode (*ddhook)(DM,DM,void*),PetscErrorCode (*restricthook)(DM,VecScatter,VecScatter,DM,void*),void *ctx) 33225dbd56e3SPeter Brune { 3323be081cd6SPeter Brune DMSubDomainHookLink link,*p; 33245dbd56e3SPeter Brune 33255dbd56e3SPeter Brune PetscFunctionBegin; 33265dbd56e3SPeter Brune PetscValidHeaderSpecific(global,DM_CLASSID,1); 3327b3a6b972SJed Brown for (p=&global->subdomainhook; *p; p=&(*p)->next) { /* Scan to the end of the current list of hooks */ 3328b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(0); 3329b3a6b972SJed Brown } 33309566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 33315dbd56e3SPeter Brune link->restricthook = restricthook; 3332be081cd6SPeter Brune link->ddhook = ddhook; 33335dbd56e3SPeter Brune link->ctx = ctx; 33340298fd71SBarry Smith link->next = NULL; 33355dbd56e3SPeter Brune *p = link; 33365dbd56e3SPeter Brune PetscFunctionReturn(0); 33375dbd56e3SPeter Brune } 33385dbd56e3SPeter Brune 3339b3a6b972SJed Brown /*@C 3340b3a6b972SJed Brown DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to the coarse grid 3341b3a6b972SJed Brown 3342b3a6b972SJed Brown Logically Collective 3343b3a6b972SJed Brown 33444165533cSJose E. Roman Input Parameters: 3345b3a6b972SJed Brown + global - global DM 3346b3a6b972SJed Brown . ddhook - function to run to pass data to the decomposition DM upon its creation 3347b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 3348b3a6b972SJed Brown - ctx - [optional] user-defined context for provide data for the hooks (may be NULL) 3349b3a6b972SJed Brown 3350b3a6b972SJed Brown Level: advanced 3351b3a6b972SJed Brown 3352b3a6b972SJed Brown Notes: 3353b3a6b972SJed Brown 3354b3a6b972SJed Brown This function is currently not available from Fortran. 3355b3a6b972SJed Brown 3356db781477SPatrick Sanan .seealso: `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3357b3a6b972SJed Brown @*/ 3358b3a6b972SJed Brown PetscErrorCode DMSubDomainHookRemove(DM global,PetscErrorCode (*ddhook)(DM,DM,void*),PetscErrorCode (*restricthook)(DM,VecScatter,VecScatter,DM,void*),void *ctx) 3359b3a6b972SJed Brown { 3360b3a6b972SJed Brown DMSubDomainHookLink link,*p; 3361b3a6b972SJed Brown 3362b3a6b972SJed Brown PetscFunctionBegin; 3363b3a6b972SJed Brown PetscValidHeaderSpecific(global,DM_CLASSID,1); 3364b3a6b972SJed Brown for (p=&global->subdomainhook; *p; p=&(*p)->next) { /* Search the list of current hooks */ 3365b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3366b3a6b972SJed Brown link = *p; 3367b3a6b972SJed Brown *p = link->next; 33689566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3369b3a6b972SJed Brown break; 3370b3a6b972SJed Brown } 3371b3a6b972SJed Brown } 3372b3a6b972SJed Brown PetscFunctionReturn(0); 3373b3a6b972SJed Brown } 3374b3a6b972SJed Brown 33755dbd56e3SPeter Brune /*@ 3376be081cd6SPeter Brune DMSubDomainRestrict - restricts user-defined problem data to a block DM by running hooks registered by DMSubDomainHookAdd() 33775dbd56e3SPeter Brune 33785dbd56e3SPeter Brune Collective if any hooks are 33795dbd56e3SPeter Brune 33804165533cSJose E. Roman Input Parameters: 33815dbd56e3SPeter Brune + fine - finer DM to use as a base 3382be081cd6SPeter Brune . oscatter - scatter from domain global vector filling subdomain global vector with overlap 3383be081cd6SPeter Brune . gscatter - scatter from domain global vector filling subdomain local vector with ghosts 33845dbd56e3SPeter Brune - coarse - coarer DM to update 33855dbd56e3SPeter Brune 33865dbd56e3SPeter Brune Level: developer 33875dbd56e3SPeter Brune 3388db781477SPatrick Sanan .seealso: `DMCoarsenHookAdd()`, `MatRestrict()` 33895dbd56e3SPeter Brune @*/ 3390be081cd6SPeter Brune PetscErrorCode DMSubDomainRestrict(DM global,VecScatter oscatter,VecScatter gscatter,DM subdm) 33915dbd56e3SPeter Brune { 3392be081cd6SPeter Brune DMSubDomainHookLink link; 33935dbd56e3SPeter Brune 33945dbd56e3SPeter Brune PetscFunctionBegin; 3395be081cd6SPeter Brune for (link=global->subdomainhook; link; link=link->next) { 33961baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global,oscatter,gscatter,subdm,link->ctx)); 33975dbd56e3SPeter Brune } 33985dbd56e3SPeter Brune PetscFunctionReturn(0); 33995dbd56e3SPeter Brune } 34005dbd56e3SPeter Brune 34015fe1f584SPeter Brune /*@ 34026a7d9d85SPeter Brune DMGetCoarsenLevel - Get's the number of coarsenings that have generated this DM. 34035fe1f584SPeter Brune 34045fe1f584SPeter Brune Not Collective 34055fe1f584SPeter Brune 34065fe1f584SPeter Brune Input Parameter: 34075fe1f584SPeter Brune . dm - the DM object 34085fe1f584SPeter Brune 34095fe1f584SPeter Brune Output Parameter: 34106a7d9d85SPeter Brune . level - number of coarsenings 34115fe1f584SPeter Brune 34125fe1f584SPeter Brune Level: developer 34135fe1f584SPeter Brune 3414db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 34155fe1f584SPeter Brune 34165fe1f584SPeter Brune @*/ 34175fe1f584SPeter Brune PetscErrorCode DMGetCoarsenLevel(DM dm,PetscInt *level) 34185fe1f584SPeter Brune { 34195fe1f584SPeter Brune PetscFunctionBegin; 34205fe1f584SPeter Brune PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3421b9d85ea2SLisandro Dalcin PetscValidIntPointer(level,2); 34225fe1f584SPeter Brune *level = dm->leveldown; 34235fe1f584SPeter Brune PetscFunctionReturn(0); 34245fe1f584SPeter Brune } 34255fe1f584SPeter Brune 34269a64c4a8SMatthew G. Knepley /*@ 34279a64c4a8SMatthew G. Knepley DMSetCoarsenLevel - Sets the number of coarsenings that have generated this DM. 34289a64c4a8SMatthew G. Knepley 34299a64c4a8SMatthew G. Knepley Not Collective 34309a64c4a8SMatthew G. Knepley 34319a64c4a8SMatthew G. Knepley Input Parameters: 34329a64c4a8SMatthew G. Knepley + dm - the DM object 34339a64c4a8SMatthew G. Knepley - level - number of coarsenings 34349a64c4a8SMatthew G. Knepley 34359a64c4a8SMatthew G. Knepley Level: developer 34369a64c4a8SMatthew G. Knepley 3437db781477SPatrick Sanan .seealso `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 34389a64c4a8SMatthew G. Knepley @*/ 34399a64c4a8SMatthew G. Knepley PetscErrorCode DMSetCoarsenLevel(DM dm,PetscInt level) 34409a64c4a8SMatthew G. Knepley { 34419a64c4a8SMatthew G. Knepley PetscFunctionBegin; 34429a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 34439a64c4a8SMatthew G. Knepley dm->leveldown = level; 34449a64c4a8SMatthew G. Knepley PetscFunctionReturn(0); 34459a64c4a8SMatthew G. Knepley } 34469a64c4a8SMatthew G. Knepley 344747c6ae99SBarry Smith /*@C 344847c6ae99SBarry Smith DMRefineHierarchy - Refines a DM object, all levels at once 344947c6ae99SBarry Smith 3450d083f849SBarry Smith Collective on dm 345147c6ae99SBarry Smith 3452d8d19677SJose E. Roman Input Parameters: 345347c6ae99SBarry Smith + dm - the DM object 345447c6ae99SBarry Smith - nlevels - the number of levels of refinement 345547c6ae99SBarry Smith 345647c6ae99SBarry Smith Output Parameter: 345747c6ae99SBarry Smith . dmf - the refined DM hierarchy 345847c6ae99SBarry Smith 345947c6ae99SBarry Smith Level: developer 346047c6ae99SBarry Smith 3461db781477SPatrick Sanan .seealso `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 346247c6ae99SBarry Smith 346347c6ae99SBarry Smith @*/ 34647087cfbeSBarry Smith PetscErrorCode DMRefineHierarchy(DM dm,PetscInt nlevels,DM dmf[]) 346547c6ae99SBarry Smith { 346647c6ae99SBarry Smith PetscFunctionBegin; 3467171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 34687a8be351SBarry Smith PetscCheck(nlevels >= 0,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"nlevels cannot be negative"); 346947c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 3470b9d85ea2SLisandro Dalcin PetscValidPointer(dmf,3); 347147c6ae99SBarry Smith if (dm->ops->refinehierarchy) { 34729566063dSJacob Faibussowitsch PetscCall((*dm->ops->refinehierarchy)(dm,nlevels,dmf)); 347347c6ae99SBarry Smith } else if (dm->ops->refine) { 347447c6ae99SBarry Smith PetscInt i; 347547c6ae99SBarry Smith 34769566063dSJacob Faibussowitsch PetscCall(DMRefine(dm,PetscObjectComm((PetscObject)dm),&dmf[0])); 347747c6ae99SBarry Smith for (i=1; i<nlevels; i++) { 34789566063dSJacob Faibussowitsch PetscCall(DMRefine(dmf[i-1],PetscObjectComm((PetscObject)dm),&dmf[i])); 347947c6ae99SBarry Smith } 3480ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"No RefineHierarchy for this DM yet"); 348147c6ae99SBarry Smith PetscFunctionReturn(0); 348247c6ae99SBarry Smith } 348347c6ae99SBarry Smith 348447c6ae99SBarry Smith /*@C 348547c6ae99SBarry Smith DMCoarsenHierarchy - Coarsens a DM object, all levels at once 348647c6ae99SBarry Smith 3487d083f849SBarry Smith Collective on dm 348847c6ae99SBarry Smith 3489d8d19677SJose E. Roman Input Parameters: 349047c6ae99SBarry Smith + dm - the DM object 349147c6ae99SBarry Smith - nlevels - the number of levels of coarsening 349247c6ae99SBarry Smith 349347c6ae99SBarry Smith Output Parameter: 349447c6ae99SBarry Smith . dmc - the coarsened DM hierarchy 349547c6ae99SBarry Smith 349647c6ae99SBarry Smith Level: developer 349747c6ae99SBarry Smith 3498db781477SPatrick Sanan .seealso `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 349947c6ae99SBarry Smith 350047c6ae99SBarry Smith @*/ 35017087cfbeSBarry Smith PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 350247c6ae99SBarry Smith { 350347c6ae99SBarry Smith PetscFunctionBegin; 3504171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 35057a8be351SBarry Smith PetscCheck(nlevels >= 0,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_OUTOFRANGE,"nlevels cannot be negative"); 350647c6ae99SBarry Smith if (nlevels == 0) PetscFunctionReturn(0); 350747c6ae99SBarry Smith PetscValidPointer(dmc,3); 350847c6ae99SBarry Smith if (dm->ops->coarsenhierarchy) { 35099566063dSJacob Faibussowitsch PetscCall((*dm->ops->coarsenhierarchy)(dm, nlevels, dmc)); 351047c6ae99SBarry Smith } else if (dm->ops->coarsen) { 351147c6ae99SBarry Smith PetscInt i; 351247c6ae99SBarry Smith 35139566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm,PetscObjectComm((PetscObject)dm),&dmc[0])); 351447c6ae99SBarry Smith for (i=1; i<nlevels; i++) { 35159566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dmc[i-1],PetscObjectComm((PetscObject)dm),&dmc[i])); 351647c6ae99SBarry Smith } 3517ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"No CoarsenHierarchy for this DM yet"); 351847c6ae99SBarry Smith PetscFunctionReturn(0); 351947c6ae99SBarry Smith } 352047c6ae99SBarry Smith 35211a266240SBarry Smith /*@C 35221a266240SBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the DM is destroyed 35231a266240SBarry Smith 35241a266240SBarry Smith Not Collective 35251a266240SBarry Smith 35261a266240SBarry Smith Input Parameters: 35271a266240SBarry Smith + dm - the DM object 35281a266240SBarry Smith - destroy - the destroy function 35291a266240SBarry Smith 35301a266240SBarry Smith Level: intermediate 35311a266240SBarry Smith 3532db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 35331a266240SBarry Smith 3534f07f9ceaSJed Brown @*/ 35351a266240SBarry Smith PetscErrorCode DMSetApplicationContextDestroy(DM dm,PetscErrorCode (*destroy)(void**)) 35361a266240SBarry Smith { 35371a266240SBarry Smith PetscFunctionBegin; 3538171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 35391a266240SBarry Smith dm->ctxdestroy = destroy; 35401a266240SBarry Smith PetscFunctionReturn(0); 35411a266240SBarry Smith } 35421a266240SBarry Smith 3543b07ff414SBarry Smith /*@ 35441b2093e4SBarry Smith DMSetApplicationContext - Set a user context into a DM object 354547c6ae99SBarry Smith 354647c6ae99SBarry Smith Not Collective 354747c6ae99SBarry Smith 354847c6ae99SBarry Smith Input Parameters: 354947c6ae99SBarry Smith + dm - the DM object 355047c6ae99SBarry Smith - ctx - the user context 355147c6ae99SBarry Smith 355247c6ae99SBarry Smith Level: intermediate 355347c6ae99SBarry Smith 3554db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 355547c6ae99SBarry Smith 355647c6ae99SBarry Smith @*/ 35571b2093e4SBarry Smith PetscErrorCode DMSetApplicationContext(DM dm,void *ctx) 355847c6ae99SBarry Smith { 355947c6ae99SBarry Smith PetscFunctionBegin; 3560171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 356147c6ae99SBarry Smith dm->ctx = ctx; 356247c6ae99SBarry Smith PetscFunctionReturn(0); 356347c6ae99SBarry Smith } 356447c6ae99SBarry Smith 356547c6ae99SBarry Smith /*@ 35661b2093e4SBarry Smith DMGetApplicationContext - Gets a user context from a DM object 356747c6ae99SBarry Smith 356847c6ae99SBarry Smith Not Collective 356947c6ae99SBarry Smith 357047c6ae99SBarry Smith Input Parameter: 357147c6ae99SBarry Smith . dm - the DM object 357247c6ae99SBarry Smith 357347c6ae99SBarry Smith Output Parameter: 357447c6ae99SBarry Smith . ctx - the user context 357547c6ae99SBarry Smith 357647c6ae99SBarry Smith Level: intermediate 357747c6ae99SBarry Smith 3578db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 357947c6ae99SBarry Smith 358047c6ae99SBarry Smith @*/ 35811b2093e4SBarry Smith PetscErrorCode DMGetApplicationContext(DM dm,void *ctx) 358247c6ae99SBarry Smith { 358347c6ae99SBarry Smith PetscFunctionBegin; 3584171400e9SBarry Smith PetscValidHeaderSpecific(dm,DM_CLASSID,1); 35851b2093e4SBarry Smith *(void**)ctx = dm->ctx; 358647c6ae99SBarry Smith PetscFunctionReturn(0); 358747c6ae99SBarry Smith } 358847c6ae99SBarry Smith 358908da532bSDmitry Karpeev /*@C 3590df3898eeSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for SNESVI. 359108da532bSDmitry Karpeev 3592d083f849SBarry Smith Logically Collective on dm 359308da532bSDmitry Karpeev 3594d8d19677SJose E. Roman Input Parameters: 359508da532bSDmitry Karpeev + dm - the DM object 35960298fd71SBarry Smith - f - the function that computes variable bounds used by SNESVI (use NULL to cancel a previous function that was set) 359708da532bSDmitry Karpeev 359808da532bSDmitry Karpeev Level: intermediate 359908da532bSDmitry Karpeev 3600db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3601db781477SPatrick Sanan `DMSetJacobian()` 360208da532bSDmitry Karpeev 360308da532bSDmitry Karpeev @*/ 360408da532bSDmitry Karpeev PetscErrorCode DMSetVariableBounds(DM dm,PetscErrorCode (*f)(DM,Vec,Vec)) 360508da532bSDmitry Karpeev { 360608da532bSDmitry Karpeev PetscFunctionBegin; 36075a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 360808da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 360908da532bSDmitry Karpeev PetscFunctionReturn(0); 361008da532bSDmitry Karpeev } 361108da532bSDmitry Karpeev 361208da532bSDmitry Karpeev /*@ 361308da532bSDmitry Karpeev DMHasVariableBounds - does the DM object have a variable bounds function? 361408da532bSDmitry Karpeev 361508da532bSDmitry Karpeev Not Collective 361608da532bSDmitry Karpeev 361708da532bSDmitry Karpeev Input Parameter: 361808da532bSDmitry Karpeev . dm - the DM object to destroy 361908da532bSDmitry Karpeev 362008da532bSDmitry Karpeev Output Parameter: 362108da532bSDmitry Karpeev . flg - PETSC_TRUE if the variable bounds function exists 362208da532bSDmitry Karpeev 362308da532bSDmitry Karpeev Level: developer 362408da532bSDmitry Karpeev 3625db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 362608da532bSDmitry Karpeev 362708da532bSDmitry Karpeev @*/ 362808da532bSDmitry Karpeev PetscErrorCode DMHasVariableBounds(DM dm,PetscBool *flg) 362908da532bSDmitry Karpeev { 363008da532bSDmitry Karpeev PetscFunctionBegin; 36315a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3632534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 363308da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 363408da532bSDmitry Karpeev PetscFunctionReturn(0); 363508da532bSDmitry Karpeev } 363608da532bSDmitry Karpeev 363708da532bSDmitry Karpeev /*@C 363808da532bSDmitry Karpeev DMComputeVariableBounds - compute variable bounds used by SNESVI. 363908da532bSDmitry Karpeev 3640d083f849SBarry Smith Logically Collective on dm 364108da532bSDmitry Karpeev 3642f899ff85SJose E. Roman Input Parameter: 3643907376e6SBarry Smith . dm - the DM object 364408da532bSDmitry Karpeev 364508da532bSDmitry Karpeev Output parameters: 364608da532bSDmitry Karpeev + xl - lower bound 364708da532bSDmitry Karpeev - xu - upper bound 364808da532bSDmitry Karpeev 3649907376e6SBarry Smith Level: advanced 3650907376e6SBarry Smith 365195452b02SPatrick Sanan Notes: 365295452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 365308da532bSDmitry Karpeev 3654db781477SPatrick Sanan .seealso `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 365508da532bSDmitry Karpeev 365608da532bSDmitry Karpeev @*/ 365708da532bSDmitry Karpeev PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 365808da532bSDmitry Karpeev { 365908da532bSDmitry Karpeev PetscFunctionBegin; 36605a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 366108da532bSDmitry Karpeev PetscValidHeaderSpecific(xl,VEC_CLASSID,2); 36625a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu,VEC_CLASSID,3); 36637a8be351SBarry Smith PetscCheck(dm->ops->computevariablebounds,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMComputeVariableBounds",((PetscObject)dm)->type_name); 36649566063dSJacob Faibussowitsch PetscCall((*dm->ops->computevariablebounds)(dm, xl,xu)); 366508da532bSDmitry Karpeev PetscFunctionReturn(0); 366608da532bSDmitry Karpeev } 366708da532bSDmitry Karpeev 3668b0ae01b7SPeter Brune /*@ 3669b0ae01b7SPeter Brune DMHasColoring - does the DM object have a method of providing a coloring? 3670b0ae01b7SPeter Brune 3671b0ae01b7SPeter Brune Not Collective 3672b0ae01b7SPeter Brune 3673b0ae01b7SPeter Brune Input Parameter: 3674b0ae01b7SPeter Brune . dm - the DM object 3675b0ae01b7SPeter Brune 3676b0ae01b7SPeter Brune Output Parameter: 3677b0ae01b7SPeter Brune . flg - PETSC_TRUE if the DM has facilities for DMCreateColoring(). 3678b0ae01b7SPeter Brune 3679b0ae01b7SPeter Brune Level: developer 3680b0ae01b7SPeter Brune 3681db781477SPatrick Sanan .seealso `DMCreateColoring()` 3682b0ae01b7SPeter Brune 3683b0ae01b7SPeter Brune @*/ 3684b0ae01b7SPeter Brune PetscErrorCode DMHasColoring(DM dm,PetscBool *flg) 3685b0ae01b7SPeter Brune { 3686b0ae01b7SPeter Brune PetscFunctionBegin; 36875a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3688534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 3689b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 3690b0ae01b7SPeter Brune PetscFunctionReturn(0); 3691b0ae01b7SPeter Brune } 3692b0ae01b7SPeter Brune 36933ad4599aSBarry Smith /*@ 36943ad4599aSBarry Smith DMHasCreateRestriction - does the DM object have a method of providing a restriction? 36953ad4599aSBarry Smith 36963ad4599aSBarry Smith Not Collective 36973ad4599aSBarry Smith 36983ad4599aSBarry Smith Input Parameter: 36993ad4599aSBarry Smith . dm - the DM object 37003ad4599aSBarry Smith 37013ad4599aSBarry Smith Output Parameter: 37023ad4599aSBarry Smith . flg - PETSC_TRUE if the DM has facilities for DMCreateRestriction(). 37033ad4599aSBarry Smith 37043ad4599aSBarry Smith Level: developer 37053ad4599aSBarry Smith 3706db781477SPatrick Sanan .seealso `DMCreateRestriction()` 37073ad4599aSBarry Smith 37083ad4599aSBarry Smith @*/ 37093ad4599aSBarry Smith PetscErrorCode DMHasCreateRestriction(DM dm,PetscBool *flg) 37103ad4599aSBarry Smith { 37113ad4599aSBarry Smith PetscFunctionBegin; 37125a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3713534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 37143ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 37153ad4599aSBarry Smith PetscFunctionReturn(0); 37163ad4599aSBarry Smith } 37173ad4599aSBarry Smith 3718a7058e45SLawrence Mitchell /*@ 3719a7058e45SLawrence Mitchell DMHasCreateInjection - does the DM object have a method of providing an injection? 3720a7058e45SLawrence Mitchell 3721a7058e45SLawrence Mitchell Not Collective 3722a7058e45SLawrence Mitchell 3723a7058e45SLawrence Mitchell Input Parameter: 3724a7058e45SLawrence Mitchell . dm - the DM object 3725a7058e45SLawrence Mitchell 3726a7058e45SLawrence Mitchell Output Parameter: 3727a7058e45SLawrence Mitchell . flg - PETSC_TRUE if the DM has facilities for DMCreateInjection(). 3728a7058e45SLawrence Mitchell 3729a7058e45SLawrence Mitchell Level: developer 3730a7058e45SLawrence Mitchell 3731db781477SPatrick Sanan .seealso `DMCreateInjection()` 3732a7058e45SLawrence Mitchell 3733a7058e45SLawrence Mitchell @*/ 3734a7058e45SLawrence Mitchell PetscErrorCode DMHasCreateInjection(DM dm,PetscBool *flg) 3735a7058e45SLawrence Mitchell { 3736a7058e45SLawrence Mitchell PetscFunctionBegin; 37375a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm,DM_CLASSID,1); 3738534a8f05SLisandro Dalcin PetscValidBoolPointer(flg,2); 37395a84ad33SLisandro Dalcin if (dm->ops->hascreateinjection) { 37409566063dSJacob Faibussowitsch PetscCall((*dm->ops->hascreateinjection)(dm,flg)); 37415a84ad33SLisandro Dalcin } else { 37425a84ad33SLisandro Dalcin *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 37435a84ad33SLisandro Dalcin } 3744a7058e45SLawrence Mitchell PetscFunctionReturn(0); 3745a7058e45SLawrence Mitchell } 3746a7058e45SLawrence Mitchell 37470298fd71SBarry Smith PetscFunctionList DMList = NULL; 3748264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3749264ace61SBarry Smith 3750264ace61SBarry Smith /*@C 3751264ace61SBarry Smith DMSetType - Builds a DM, for a particular DM implementation. 3752264ace61SBarry Smith 3753d083f849SBarry Smith Collective on dm 3754264ace61SBarry Smith 3755264ace61SBarry Smith Input Parameters: 3756264ace61SBarry Smith + dm - The DM object 3757264ace61SBarry Smith - method - The name of the DM type 3758264ace61SBarry Smith 3759264ace61SBarry Smith Options Database Key: 3760264ace61SBarry Smith . -dm_type <type> - Sets the DM type; use -help for a list of available types 3761264ace61SBarry Smith 3762264ace61SBarry Smith Notes: 3763e1589f56SBarry Smith See "petsc/include/petscdm.h" for available DM types (for instance, DM1D, DM2D, or DM3D). 3764264ace61SBarry Smith 3765264ace61SBarry Smith Level: intermediate 3766264ace61SBarry Smith 3767db781477SPatrick Sanan .seealso: `DMGetType()`, `DMCreate()` 3768264ace61SBarry Smith @*/ 376919fd82e9SBarry Smith PetscErrorCode DMSetType(DM dm, DMType method) 3770264ace61SBarry Smith { 3771264ace61SBarry Smith PetscErrorCode (*r)(DM); 3772264ace61SBarry Smith PetscBool match; 3773264ace61SBarry Smith 3774264ace61SBarry Smith PetscFunctionBegin; 3775264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID,1); 37769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) dm, method, &match)); 3777264ace61SBarry Smith if (match) PetscFunctionReturn(0); 3778264ace61SBarry Smith 37799566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 37809566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList,method,&r)); 37817a8be351SBarry Smith PetscCheck(r,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3782264ace61SBarry Smith 37831baa6e33SBarry Smith if (dm->ops->destroy) PetscCall((*dm->ops->destroy)(dm)); 37849566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops,sizeof(*dm->ops))); 37859566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm,method)); 37869566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 3787264ace61SBarry Smith PetscFunctionReturn(0); 3788264ace61SBarry Smith } 3789264ace61SBarry Smith 3790264ace61SBarry Smith /*@C 3791264ace61SBarry Smith DMGetType - Gets the DM type name (as a string) from the DM. 3792264ace61SBarry Smith 3793264ace61SBarry Smith Not Collective 3794264ace61SBarry Smith 3795264ace61SBarry Smith Input Parameter: 3796264ace61SBarry Smith . dm - The DM 3797264ace61SBarry Smith 3798264ace61SBarry Smith Output Parameter: 3799264ace61SBarry Smith . type - The DM type name 3800264ace61SBarry Smith 3801264ace61SBarry Smith Level: intermediate 3802264ace61SBarry Smith 3803db781477SPatrick Sanan .seealso: `DMSetType()`, `DMCreate()` 3804264ace61SBarry Smith @*/ 380519fd82e9SBarry Smith PetscErrorCode DMGetType(DM dm, DMType *type) 3806264ace61SBarry Smith { 3807264ace61SBarry Smith PetscFunctionBegin; 3808264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID,1); 3809c959eef4SJed Brown PetscValidPointer(type,2); 38109566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3811264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 3812264ace61SBarry Smith PetscFunctionReturn(0); 3813264ace61SBarry Smith } 3814264ace61SBarry Smith 381567a56275SMatthew G Knepley /*@C 381667a56275SMatthew G Knepley DMConvert - Converts a DM to another DM, either of the same or different type. 381767a56275SMatthew G Knepley 3818d083f849SBarry Smith Collective on dm 381967a56275SMatthew G Knepley 382067a56275SMatthew G Knepley Input Parameters: 382167a56275SMatthew G Knepley + dm - the DM 382267a56275SMatthew G Knepley - newtype - new DM type (use "same" for the same type) 382367a56275SMatthew G Knepley 382467a56275SMatthew G Knepley Output Parameter: 382567a56275SMatthew G Knepley . M - pointer to new DM 382667a56275SMatthew G Knepley 382767a56275SMatthew G Knepley Notes: 382867a56275SMatthew G Knepley Cannot be used to convert a sequential DM to parallel or parallel to sequential, 382967a56275SMatthew G Knepley the MPI communicator of the generated DM is always the same as the communicator 383067a56275SMatthew G Knepley of the input DM. 383167a56275SMatthew G Knepley 383267a56275SMatthew G Knepley Level: intermediate 383367a56275SMatthew G Knepley 3834db781477SPatrick Sanan .seealso: `DMCreate()` 383567a56275SMatthew G Knepley @*/ 383619fd82e9SBarry Smith PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 383767a56275SMatthew G Knepley { 383867a56275SMatthew G Knepley DM B; 383967a56275SMatthew G Knepley char convname[256]; 3840c067b6caSMatthew G. Knepley PetscBool sametype/*, issame */; 384167a56275SMatthew G Knepley 384267a56275SMatthew G Knepley PetscFunctionBegin; 384367a56275SMatthew G Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 384467a56275SMatthew G Knepley PetscValidType(dm,1); 384567a56275SMatthew G Knepley PetscValidPointer(M,3); 38469566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) dm, newtype, &sametype)); 38479566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3848c067b6caSMatthew G. Knepley if (sametype) { 3849c067b6caSMatthew G. Knepley *M = dm; 38509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) dm)); 3851c067b6caSMatthew G. Knepley PetscFunctionReturn(0); 3852c067b6caSMatthew G. Knepley } else { 38530298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM*) = NULL; 385467a56275SMatthew G Knepley 385567a56275SMatthew G Knepley /* 385667a56275SMatthew G Knepley Order of precedence: 385767a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 385867a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 385967a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 386067a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 386167a56275SMatthew G Knepley 5) Use a really basic converter. 386267a56275SMatthew G Knepley */ 386367a56275SMatthew G Knepley 386467a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 38659566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname,"DMConvert_",sizeof(convname))); 38669566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,((PetscObject) dm)->type_name,sizeof(convname))); 38679566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,"_",sizeof(convname))); 38689566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,newtype,sizeof(convname))); 38699566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,"_C",sizeof(convname))); 38709566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm,convname,&conv)); 387167a56275SMatthew G Knepley if (conv) goto foundconv; 387267a56275SMatthew G Knepley 387367a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 38749566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 38759566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 38769566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname,"DMConvert_",sizeof(convname))); 38779566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,((PetscObject) dm)->type_name,sizeof(convname))); 38789566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,"_",sizeof(convname))); 38799566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,newtype,sizeof(convname))); 38809566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname,"_C",sizeof(convname))); 38819566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B,convname,&conv)); 388267a56275SMatthew G Knepley if (conv) { 38839566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 388467a56275SMatthew G Knepley goto foundconv; 388567a56275SMatthew G Knepley } 388667a56275SMatthew G Knepley 388767a56275SMatthew G Knepley #if 0 388867a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 388967a56275SMatthew G Knepley conv = B->ops->convertfrom; 38909566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 389167a56275SMatthew G Knepley if (conv) goto foundconv; 389267a56275SMatthew G Knepley 389367a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 389467a56275SMatthew G Knepley if (dm->ops->convert) { 389567a56275SMatthew G Knepley conv = dm->ops->convert; 389667a56275SMatthew G Knepley } 389767a56275SMatthew G Knepley if (conv) goto foundconv; 389867a56275SMatthew G Knepley #endif 389967a56275SMatthew G Knepley 390067a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 390198921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject) dm)->type_name, newtype); 390267a56275SMatthew G Knepley 390367a56275SMatthew G Knepley foundconv: 39049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert,dm,0,0,0)); 39059566063dSJacob Faibussowitsch PetscCall((*conv)(dm,newtype,M)); 390612fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 390790b157c4SStefano Zampini { 390812fa691eSMatthew G. Knepley const PetscReal *maxCell, *L; 3909*6858538eSMatthew G. Knepley 3910*6858538eSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &L)); 3911*6858538eSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, L)); 3912c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 39139566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 39149566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype,(char**)&(*M)->vectype)); 39159566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 39169566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype,(char**)&(*M)->mattype)); 391712fa691eSMatthew G. Knepley } 39189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert,dm,0,0,0)); 391967a56275SMatthew G Knepley } 39209566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject) *M)); 392167a56275SMatthew G Knepley PetscFunctionReturn(0); 392267a56275SMatthew G Knepley } 3923264ace61SBarry Smith 3924264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 3925264ace61SBarry Smith 3926264ace61SBarry Smith /*@C 39271c84c290SBarry Smith DMRegister - Adds a new DM component implementation 39281c84c290SBarry Smith 39291c84c290SBarry Smith Not Collective 39301c84c290SBarry Smith 39311c84c290SBarry Smith Input Parameters: 39321c84c290SBarry Smith + name - The name of a new user-defined creation routine 39331c84c290SBarry Smith - create_func - The creation routine itself 39341c84c290SBarry Smith 39351c84c290SBarry Smith Notes: 39361c84c290SBarry Smith DMRegister() may be called multiple times to add several user-defined DMs 39371c84c290SBarry Smith 39381c84c290SBarry Smith Sample usage: 39391c84c290SBarry Smith .vb 3940bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 39411c84c290SBarry Smith .ve 39421c84c290SBarry Smith 39431c84c290SBarry Smith Then, your DM type can be chosen with the procedural interface via 39441c84c290SBarry Smith .vb 39451c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 39461c84c290SBarry Smith DMSetType(DM,"my_da"); 39471c84c290SBarry Smith .ve 39481c84c290SBarry Smith or at runtime via the option 39491c84c290SBarry Smith .vb 39501c84c290SBarry Smith -da_type my_da 39511c84c290SBarry Smith .ve 3952264ace61SBarry Smith 3953264ace61SBarry Smith Level: advanced 39541c84c290SBarry Smith 3955db781477SPatrick Sanan .seealso: `DMRegisterAll()`, `DMRegisterDestroy()` 39561c84c290SBarry Smith 3957264ace61SBarry Smith @*/ 3958bdf89e91SBarry Smith PetscErrorCode DMRegister(const char sname[],PetscErrorCode (*function)(DM)) 3959264ace61SBarry Smith { 3960264ace61SBarry Smith PetscFunctionBegin; 39619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 39629566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList,sname,function)); 3963264ace61SBarry Smith PetscFunctionReturn(0); 3964264ace61SBarry Smith } 3965264ace61SBarry Smith 3966b859378eSBarry Smith /*@C 396755849f57SBarry Smith DMLoad - Loads a DM that has been stored in binary with DMView(). 3968b859378eSBarry Smith 3969d083f849SBarry Smith Collective on viewer 3970b859378eSBarry Smith 3971b859378eSBarry Smith Input Parameters: 3972b859378eSBarry Smith + newdm - the newly loaded DM, this needs to have been created with DMCreate() or 3973b859378eSBarry Smith some related function before a call to DMLoad(). 3974b859378eSBarry Smith - viewer - binary file viewer, obtained from PetscViewerBinaryOpen() or 3975b859378eSBarry Smith HDF5 file viewer, obtained from PetscViewerHDF5Open() 3976b859378eSBarry Smith 3977b859378eSBarry Smith Level: intermediate 3978b859378eSBarry Smith 3979b859378eSBarry Smith Notes: 398055849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 3981b859378eSBarry Smith 3982cd7e8a5eSksagiyam Using PETSCVIEWERHDF5 type with PETSC_VIEWER_HDF5_PETSC format, one can save multiple DMPlex 3983cd7e8a5eSksagiyam meshes in a single HDF5 file. This in turn requires one to name the DMPlex object with PetscObjectSetName() 3984cd7e8a5eSksagiyam before saving it with DMView() and before loading it with DMLoad() for identification of the mesh object. 3985cd7e8a5eSksagiyam 3986b859378eSBarry Smith Notes for advanced users: 3987b859378eSBarry Smith Most users should not need to know the details of the binary storage 3988b859378eSBarry Smith format, since DMLoad() and DMView() completely hide these details. 3989b859378eSBarry Smith But for anyone who's interested, the standard binary matrix storage 3990b859378eSBarry Smith format is 3991b859378eSBarry Smith .vb 3992b859378eSBarry Smith has not yet been determined 3993b859378eSBarry Smith .ve 3994b859378eSBarry Smith 3995db781477SPatrick Sanan .seealso: `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 3996b859378eSBarry Smith @*/ 3997b859378eSBarry Smith PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 3998b859378eSBarry Smith { 39999331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4000b859378eSBarry Smith 4001b859378eSBarry Smith PetscFunctionBegin; 4002b859378eSBarry Smith PetscValidHeaderSpecific(newdm,DM_CLASSID,1); 4003b859378eSBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 40049566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 40059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 40069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,&ishdf5)); 40079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load,viewer,0,0,0)); 40089331c7a4SMatthew G. Knepley if (isbinary) { 40099331c7a4SMatthew G. Knepley PetscInt classid; 40109331c7a4SMatthew G. Knepley char type[256]; 4011b859378eSBarry Smith 40129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,&classid,1,NULL,PETSC_INT)); 40137a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID,PetscObjectComm((PetscObject)newdm),PETSC_ERR_ARG_WRONG,"Not DM next in file, classid found %d",(int)classid); 40149566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,type,256,NULL,PETSC_CHAR)); 40159566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 40169566063dSJacob Faibussowitsch if (newdm->ops->load) PetscCall((*newdm->ops->load)(newdm,viewer)); 40179331c7a4SMatthew G. Knepley } else if (ishdf5) { 40189566063dSJacob Faibussowitsch if (newdm->ops->load) PetscCall((*newdm->ops->load)(newdm,viewer)); 40199331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 40209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load,viewer,0,0,0)); 4021b859378eSBarry Smith PetscFunctionReturn(0); 4022b859378eSBarry Smith } 4023b859378eSBarry Smith 40247da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 40257da65231SMatthew G Knepley 4026a6dfd86eSKarl Rupp PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4027a6dfd86eSKarl Rupp { 40281d47ebbbSSatish Balay PetscInt f; 40291b30c384SMatthew G Knepley 40307da65231SMatthew G Knepley PetscFunctionBegin; 403163a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 40321d47ebbbSSatish Balay for (f = 0; f < len; ++f) { 40339566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 40347da65231SMatthew G Knepley } 40357da65231SMatthew G Knepley PetscFunctionReturn(0); 40367da65231SMatthew G Knepley } 40377da65231SMatthew G Knepley 4038a6dfd86eSKarl Rupp PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4039a6dfd86eSKarl Rupp { 40401b30c384SMatthew G Knepley PetscInt f, g; 40417da65231SMatthew G Knepley 40427da65231SMatthew G Knepley PetscFunctionBegin; 404363a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 40441d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 40459566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 40461d47ebbbSSatish Balay for (g = 0; g < cols; ++g) { 404763a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f*cols+g]))); 40487da65231SMatthew G Knepley } 40499566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 40507da65231SMatthew G Knepley } 40517da65231SMatthew G Knepley PetscFunctionReturn(0); 40527da65231SMatthew G Knepley } 4053e7c4fc90SDmitry Karpeev 40546113b454SMatthew G. Knepley PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4055e759306cSMatthew G. Knepley { 40560c5b8624SToby Isaac PetscInt localSize, bs; 40570c5b8624SToby Isaac PetscMPIInt size; 40580c5b8624SToby Isaac Vec x, xglob; 40590c5b8624SToby Isaac const PetscScalar *xarray; 4060e759306cSMatthew G. Knepley 4061e759306cSMatthew G. Knepley PetscFunctionBegin; 40629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject) dm),&size)); 40639566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 40649566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 40659566063dSJacob Faibussowitsch PetscCall(VecChop(x, tol)); 40669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject) dm),"%s:\n",name)); 40670c5b8624SToby Isaac if (size > 1) { 40689566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x,&localSize)); 40699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xarray)); 40709566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x,&bs)); 40719566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject) dm),bs,localSize,PETSC_DETERMINE,xarray,&xglob)); 40720c5b8624SToby Isaac } else { 40730c5b8624SToby Isaac xglob = x; 40740c5b8624SToby Isaac } 40759566063dSJacob Faibussowitsch PetscCall(VecView(xglob,PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject) dm)))); 40760c5b8624SToby Isaac if (size > 1) { 40779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 40789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xarray)); 40790c5b8624SToby Isaac } 40809566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 4081e759306cSMatthew G. Knepley PetscFunctionReturn(0); 4082e759306cSMatthew G. Knepley } 4083e759306cSMatthew G. Knepley 408488ed4aceSMatthew G Knepley /*@ 40851bb6d2a8SBarry Smith DMGetSection - Get the PetscSection encoding the local data layout for the DM. This is equivalent to DMGetLocalSection(). Deprecated in v3.12 4086061576a5SJed Brown 4087061576a5SJed Brown Input Parameter: 4088061576a5SJed Brown . dm - The DM 4089061576a5SJed Brown 4090061576a5SJed Brown Output Parameter: 4091061576a5SJed Brown . section - The PetscSection 4092061576a5SJed Brown 4093061576a5SJed Brown Options Database Keys: 4094061576a5SJed Brown . -dm_petscsection_view - View the Section created by the DM 4095061576a5SJed Brown 4096061576a5SJed Brown Level: advanced 4097061576a5SJed Brown 4098061576a5SJed Brown Notes: 4099061576a5SJed Brown Use DMGetLocalSection() in new code. 4100061576a5SJed Brown 4101061576a5SJed Brown This gets a borrowed reference, so the user should not destroy this PetscSection. 4102061576a5SJed Brown 4103db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4104061576a5SJed Brown @*/ 4105061576a5SJed Brown PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4106061576a5SJed Brown { 4107061576a5SJed Brown PetscFunctionBegin; 41089566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm,section)); 4109061576a5SJed Brown PetscFunctionReturn(0); 4110061576a5SJed Brown } 4111061576a5SJed Brown 4112061576a5SJed Brown /*@ 4113061576a5SJed Brown DMGetLocalSection - Get the PetscSection encoding the local data layout for the DM. 411488ed4aceSMatthew G Knepley 411588ed4aceSMatthew G Knepley Input Parameter: 411688ed4aceSMatthew G Knepley . dm - The DM 411788ed4aceSMatthew G Knepley 411888ed4aceSMatthew G Knepley Output Parameter: 411988ed4aceSMatthew G Knepley . section - The PetscSection 412088ed4aceSMatthew G Knepley 4121e5893cccSMatthew G. Knepley Options Database Keys: 4122e5893cccSMatthew G. Knepley . -dm_petscsection_view - View the Section created by the DM 4123e5893cccSMatthew G. Knepley 412488ed4aceSMatthew G Knepley Level: intermediate 412588ed4aceSMatthew G Knepley 412688ed4aceSMatthew G Knepley Note: This gets a borrowed reference, so the user should not destroy this PetscSection. 412788ed4aceSMatthew G Knepley 4128db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetGlobalSection()` 412988ed4aceSMatthew G Knepley @*/ 4130061576a5SJed Brown PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 41310adebc6cSBarry Smith { 413288ed4aceSMatthew G Knepley PetscFunctionBegin; 413388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 413488ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 41351bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4136e5e52638SMatthew G. Knepley PetscInt d; 4137e5e52638SMatthew G. Knepley 413845480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 413945480ffeSMatthew G. Knepley PetscObject obj = (PetscObject) dm; 414045480ffeSMatthew G. Knepley PetscViewer viewer; 414145480ffeSMatthew G. Knepley PetscViewerFormat format; 414245480ffeSMatthew G. Knepley PetscBool flg; 414345480ffeSMatthew G. Knepley 41449566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 41459566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 414645480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 41479566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 41489566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 414945480ffeSMatthew G. Knepley } 415045480ffeSMatthew G. Knepley if (flg) { 41519566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 41529566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 41539566063dSJacob Faibussowitsch PetscCall(PetscViewerDestroy(&viewer)); 415445480ffeSMatthew G. Knepley } 415545480ffeSMatthew G. Knepley } 41569566063dSJacob Faibussowitsch PetscCall((*dm->ops->createlocalsection)(dm)); 41579566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject) dm->localSection, NULL, "-dm_petscsection_view")); 41582f0f8703SMatthew G. Knepley } 41591bb6d2a8SBarry Smith *section = dm->localSection; 416088ed4aceSMatthew G Knepley PetscFunctionReturn(0); 416188ed4aceSMatthew G Knepley } 416288ed4aceSMatthew G Knepley 416388ed4aceSMatthew G Knepley /*@ 41641bb6d2a8SBarry Smith DMSetSection - Set the PetscSection encoding the local data layout for the DM. This is equivalent to DMSetLocalSection(). Deprecated in v3.12 4165061576a5SJed Brown 4166061576a5SJed Brown Input Parameters: 4167061576a5SJed Brown + dm - The DM 4168061576a5SJed Brown - section - The PetscSection 4169061576a5SJed Brown 4170061576a5SJed Brown Level: advanced 4171061576a5SJed Brown 4172061576a5SJed Brown Notes: 4173061576a5SJed Brown Use DMSetLocalSection() in new code. 4174061576a5SJed Brown 4175061576a5SJed Brown Any existing Section will be destroyed 4176061576a5SJed Brown 4177db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4178061576a5SJed Brown @*/ 4179061576a5SJed Brown PetscErrorCode DMSetSection(DM dm, PetscSection section) 4180061576a5SJed Brown { 4181061576a5SJed Brown PetscFunctionBegin; 41829566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm,section)); 4183061576a5SJed Brown PetscFunctionReturn(0); 4184061576a5SJed Brown } 4185061576a5SJed Brown 4186061576a5SJed Brown /*@ 4187061576a5SJed Brown DMSetLocalSection - Set the PetscSection encoding the local data layout for the DM. 418888ed4aceSMatthew G Knepley 418988ed4aceSMatthew G Knepley Input Parameters: 419088ed4aceSMatthew G Knepley + dm - The DM 419188ed4aceSMatthew G Knepley - section - The PetscSection 419288ed4aceSMatthew G Knepley 419388ed4aceSMatthew G Knepley Level: intermediate 419488ed4aceSMatthew G Knepley 419588ed4aceSMatthew G Knepley Note: Any existing Section will be destroyed 419688ed4aceSMatthew G Knepley 4197db781477SPatrick Sanan .seealso: `DMGetLocalSection()`, `DMSetGlobalSection()` 419888ed4aceSMatthew G Knepley @*/ 4199061576a5SJed Brown PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 42000adebc6cSBarry Smith { 4201c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4202af122d2aSMatthew G Knepley PetscInt f; 420388ed4aceSMatthew G Knepley 420488ed4aceSMatthew G Knepley PetscFunctionBegin; 420588ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4206b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section,PETSC_SECTION_CLASSID,2); 42079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 42089566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 42091bb6d2a8SBarry Smith dm->localSection = section; 42109566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4211af122d2aSMatthew G Knepley if (numFields) { 42129566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4213af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 42140f21e855SMatthew G. Knepley PetscObject disc; 4215af122d2aSMatthew G Knepley const char *name; 4216af122d2aSMatthew G Knepley 42179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 42189566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 42199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4220af122d2aSMatthew G Knepley } 4221af122d2aSMatthew G Knepley } 4222e87a4003SBarry Smith /* The global section will be rebuilt in the next call to DMGetGlobalSection(). */ 42239566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 422488ed4aceSMatthew G Knepley PetscFunctionReturn(0); 422588ed4aceSMatthew G Knepley } 422688ed4aceSMatthew G Knepley 42279435951eSToby Isaac /*@ 4228b7385021SStefano Zampini DMGetDefaultConstraints - Get the PetscSection and Mat that specify the local constraint interpolation. See DMSetDefaultConstraints() for a description of the purpose of constraint interpolation. 42299435951eSToby Isaac 4230e228b242SToby Isaac not collective 4231e228b242SToby Isaac 42329435951eSToby Isaac Input Parameter: 42339435951eSToby Isaac . dm - The DM 42349435951eSToby Isaac 4235d8d19677SJose E. Roman Output Parameters: 42369435951eSToby Isaac + section - The PetscSection describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns NULL if there are no local constraints. 423779769bd5SJed Brown . mat - The Mat that interpolates local constraints: its width should be the layout size of the default section. Returns NULL if there are no local constraints. 423879769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 42399435951eSToby Isaac 42409435951eSToby Isaac Level: advanced 42419435951eSToby Isaac 424279769bd5SJed Brown Note: This gets borrowed references, so the user should not destroy the PetscSection, Mat, or Vec. 42439435951eSToby Isaac 4244db781477SPatrick Sanan .seealso: `DMSetDefaultConstraints()` 42459435951eSToby Isaac @*/ 424679769bd5SJed Brown PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 42479435951eSToby Isaac { 42489435951eSToby Isaac PetscFunctionBegin; 42499435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42509566063dSJacob Faibussowitsch if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscCall((*dm->ops->createdefaultconstraints)(dm)); 42513b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 42523b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 425379769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 42549435951eSToby Isaac PetscFunctionReturn(0); 42559435951eSToby Isaac } 42569435951eSToby Isaac 42579435951eSToby Isaac /*@ 4258b7385021SStefano Zampini DMSetDefaultConstraints - Set the PetscSection and Mat that specify the local constraint interpolation. 42599435951eSToby Isaac 426079769bd5SJed Brown If a constraint matrix is specified, then it is applied during DMGlobalToLocalEnd() when mode is INSERT_VALUES, INSERT_BC_VALUES, or INSERT_ALL_VALUES. Without a constraint matrix, the local vector l returned by DMGlobalToLocalEnd() contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the PetscSection returned by DMGetDefaultConstraints(). 42619435951eSToby Isaac 426279769bd5SJed Brown If a constraint matrix is specified, then its adjoint is applied during DMLocalToGlobalBegin() when mode is ADD_VALUES, ADD_BC_VALUES, or ADD_ALL_VALUES. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 42639435951eSToby Isaac 4264e228b242SToby Isaac collective on dm 4265e228b242SToby Isaac 42669435951eSToby Isaac Input Parameters: 42679435951eSToby Isaac + dm - The DM 426879769bd5SJed Brown . section - The PetscSection describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (PETSC_COMM_SELF or derivative). 426979769bd5SJed Brown . mat - The Mat that interpolates local constraints: its width should be the layout size of the default section: NULL indicates no constraints. Must have a local communicator (PETSC_COMM_SELF or derivative). 427079769bd5SJed Brown - bias - A bias vector to be added to constrained values in the local vector. NULL indicates no bias. Must have a local communicator (PETSC_COMM_SELF or derivative). 42719435951eSToby Isaac 42729435951eSToby Isaac Level: advanced 42739435951eSToby Isaac 427479769bd5SJed Brown Note: This increments the references of the PetscSection, Mat, and Vec, so they user can destroy them. 42759435951eSToby Isaac 4276db781477SPatrick Sanan .seealso: `DMGetDefaultConstraints()` 42779435951eSToby Isaac @*/ 427879769bd5SJed Brown PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 42799435951eSToby Isaac { 4280e228b242SToby Isaac PetscMPIInt result; 42819435951eSToby Isaac 42829435951eSToby Isaac PetscFunctionBegin; 42839435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4284e228b242SToby Isaac if (section) { 4285e228b242SToby Isaac PetscValidHeaderSpecific(section,PETSC_SECTION_CLASSID,2); 42869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)section),&result)); 42877a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"constraint section must have local communicator"); 4288e228b242SToby Isaac } 4289e228b242SToby Isaac if (mat) { 4290e228b242SToby Isaac PetscValidHeaderSpecific(mat,MAT_CLASSID,3); 42919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)mat),&result)); 42927a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"constraint matrix must have local communicator"); 4293e228b242SToby Isaac } 429479769bd5SJed Brown if (bias) { 429579769bd5SJed Brown PetscValidHeaderSpecific(bias,VEC_CLASSID,4); 42969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF,PetscObjectComm((PetscObject)bias),&result)); 429779769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"constraint bias must have local communicator"); 429879769bd5SJed Brown } 42999566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43009566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 43013b8ba7d1SJed Brown dm->defaultConstraint.section = section; 43029566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 43039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 43043b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 43059566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 43069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 430779769bd5SJed Brown dm->defaultConstraint.bias = bias; 43089435951eSToby Isaac PetscFunctionReturn(0); 43099435951eSToby Isaac } 43109435951eSToby Isaac 4311497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4312507e4973SMatthew G. Knepley /* 4313507e4973SMatthew G. Knepley DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. 4314507e4973SMatthew G. Knepley 4315507e4973SMatthew G. Knepley Input Parameters: 4316507e4973SMatthew G. Knepley + dm - The DM 4317507e4973SMatthew G. Knepley . localSection - PetscSection describing the local data layout 4318507e4973SMatthew G. Knepley - globalSection - PetscSection describing the global data layout 4319507e4973SMatthew G. Knepley 4320507e4973SMatthew G. Knepley Level: intermediate 4321507e4973SMatthew G. Knepley 4322db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()` 4323507e4973SMatthew G. Knepley */ 4324f741bcd2SMatthew G. Knepley static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4325507e4973SMatthew G. Knepley { 4326507e4973SMatthew G. Knepley MPI_Comm comm; 4327507e4973SMatthew G. Knepley PetscLayout layout; 4328507e4973SMatthew G. Knepley const PetscInt *ranges; 4329507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4330507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4331507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4332507e4973SMatthew G. Knepley 4333507e4973SMatthew G. Knepley PetscFunctionBegin; 43349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm,&comm)); 4335507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 43369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 43379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 43389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 43399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 43409566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 43419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 43429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 43439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 43449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4345507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4346f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4347507e4973SMatthew G. Knepley 43489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 43499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 43509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 43519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 43529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 43539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4354507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 435563a3b9bcSJacob Faibussowitsch if ((gdof < 0 ? -(gdof+1) : gdof) != dof) {PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); valid = PETSC_FALSE;} 435663a3b9bcSJacob Faibussowitsch if (gcdof && (gcdof != cdof)) {PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); valid = PETSC_FALSE;} 4357507e4973SMatthew G. Knepley if (gdof < 0) { 4358507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof+1)-gcdof : gdof-gcdof; 4359507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4360507e4973SMatthew G. Knepley PetscInt offset = -(goff+1) + d, r; 4361507e4973SMatthew G. Knepley 43629566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset,size+1,ranges,&r)); 4363507e4973SMatthew G. Knepley if (r < 0) r = -(r+2); 436463a3b9bcSJacob Faibussowitsch if ((r < 0) || (r >= size)) {PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); valid = PETSC_FALSE;break;} 4365507e4973SMatthew G. Knepley } 4366507e4973SMatthew G. Knepley } 4367507e4973SMatthew G. Knepley } 43689566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 43699566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 43701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4371507e4973SMatthew G. Knepley if (!gvalid) { 43729566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4373507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4374507e4973SMatthew G. Knepley } 4375507e4973SMatthew G. Knepley PetscFunctionReturn(0); 4376507e4973SMatthew G. Knepley } 4377f741bcd2SMatthew G. Knepley #endif 4378507e4973SMatthew G. Knepley 437988ed4aceSMatthew G Knepley /*@ 4380e87a4003SBarry Smith DMGetGlobalSection - Get the PetscSection encoding the global data layout for the DM. 438188ed4aceSMatthew G Knepley 4382d083f849SBarry Smith Collective on dm 43838b1ab98fSJed Brown 438488ed4aceSMatthew G Knepley Input Parameter: 438588ed4aceSMatthew G Knepley . dm - The DM 438688ed4aceSMatthew G Knepley 438788ed4aceSMatthew G Knepley Output Parameter: 438888ed4aceSMatthew G Knepley . section - The PetscSection 438988ed4aceSMatthew G Knepley 439088ed4aceSMatthew G Knepley Level: intermediate 439188ed4aceSMatthew G Knepley 439288ed4aceSMatthew G Knepley Note: This gets a borrowed reference, so the user should not destroy this PetscSection. 439388ed4aceSMatthew G Knepley 4394db781477SPatrick Sanan .seealso: `DMSetLocalSection()`, `DMGetLocalSection()` 439588ed4aceSMatthew G Knepley @*/ 4396e87a4003SBarry Smith PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 43970adebc6cSBarry Smith { 439888ed4aceSMatthew G Knepley PetscFunctionBegin; 439988ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 440088ed4aceSMatthew G Knepley PetscValidPointer(section, 2); 44011bb6d2a8SBarry Smith if (!dm->globalSection) { 4402fd59a867SMatthew G. Knepley PetscSection s; 4403fd59a867SMatthew G. Knepley 44049566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 44057a8be351SBarry Smith PetscCheck(s,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 44067a8be351SBarry Smith PetscCheck(dm->sf,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 44079566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(s, dm->sf, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 44089566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 44099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 44109566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 441188ed4aceSMatthew G Knepley } 44121bb6d2a8SBarry Smith *section = dm->globalSection; 441388ed4aceSMatthew G Knepley PetscFunctionReturn(0); 441488ed4aceSMatthew G Knepley } 441588ed4aceSMatthew G Knepley 4416b21d0597SMatthew G Knepley /*@ 4417e87a4003SBarry Smith DMSetGlobalSection - Set the PetscSection encoding the global data layout for the DM. 4418b21d0597SMatthew G Knepley 4419b21d0597SMatthew G Knepley Input Parameters: 4420b21d0597SMatthew G Knepley + dm - The DM 44215080bbdbSMatthew G Knepley - section - The PetscSection, or NULL 4422b21d0597SMatthew G Knepley 4423b21d0597SMatthew G Knepley Level: intermediate 4424b21d0597SMatthew G Knepley 4425b21d0597SMatthew G Knepley Note: Any existing Section will be destroyed 4426b21d0597SMatthew G Knepley 4427db781477SPatrick Sanan .seealso: `DMGetGlobalSection()`, `DMSetLocalSection()` 4428b21d0597SMatthew G Knepley @*/ 4429e87a4003SBarry Smith PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 44300adebc6cSBarry Smith { 4431b21d0597SMatthew G Knepley PetscFunctionBegin; 4432b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 44335080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section,PETSC_SECTION_CLASSID,2); 44349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44359566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 44361bb6d2a8SBarry Smith dm->globalSection = section; 4437497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 44389566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4439507e4973SMatthew G. Knepley #endif 4440b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4441b21d0597SMatthew G Knepley } 4442b21d0597SMatthew G Knepley 444388ed4aceSMatthew G Knepley /*@ 44441bb6d2a8SBarry Smith DMGetSectionSF - Get the PetscSF encoding the parallel dof overlap for the DM. If it has not been set, 444588ed4aceSMatthew G Knepley it is created from the default PetscSection layouts in the DM. 444688ed4aceSMatthew G Knepley 444788ed4aceSMatthew G Knepley Input Parameter: 444888ed4aceSMatthew G Knepley . dm - The DM 444988ed4aceSMatthew G Knepley 445088ed4aceSMatthew G Knepley Output Parameter: 445188ed4aceSMatthew G Knepley . sf - The PetscSF 445288ed4aceSMatthew G Knepley 445388ed4aceSMatthew G Knepley Level: intermediate 445488ed4aceSMatthew G Knepley 445588ed4aceSMatthew G Knepley Note: This gets a borrowed reference, so the user should not destroy this PetscSF. 445688ed4aceSMatthew G Knepley 4457db781477SPatrick Sanan .seealso: `DMSetSectionSF()`, `DMCreateSectionSF()` 445888ed4aceSMatthew G Knepley @*/ 44591bb6d2a8SBarry Smith PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 44600adebc6cSBarry Smith { 446188ed4aceSMatthew G Knepley PetscInt nroots; 446288ed4aceSMatthew G Knepley 446388ed4aceSMatthew G Knepley PetscFunctionBegin; 446488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 446588ed4aceSMatthew G Knepley PetscValidPointer(sf, 2); 44661bb6d2a8SBarry Smith if (!dm->sectionSF) { 44679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm),&dm->sectionSF)); 446833907cc2SStefano Zampini } 44699566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 447088ed4aceSMatthew G Knepley if (nroots < 0) { 447188ed4aceSMatthew G Knepley PetscSection section, gSection; 447288ed4aceSMatthew G Knepley 44739566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 447431ea6d37SMatthew G Knepley if (section) { 44759566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 44769566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 447731ea6d37SMatthew G Knepley } else { 44780298fd71SBarry Smith *sf = NULL; 447931ea6d37SMatthew G Knepley PetscFunctionReturn(0); 448031ea6d37SMatthew G Knepley } 448188ed4aceSMatthew G Knepley } 44821bb6d2a8SBarry Smith *sf = dm->sectionSF; 448388ed4aceSMatthew G Knepley PetscFunctionReturn(0); 448488ed4aceSMatthew G Knepley } 448588ed4aceSMatthew G Knepley 448688ed4aceSMatthew G Knepley /*@ 44871bb6d2a8SBarry Smith DMSetSectionSF - Set the PetscSF encoding the parallel dof overlap for the DM 448888ed4aceSMatthew G Knepley 448988ed4aceSMatthew G Knepley Input Parameters: 449088ed4aceSMatthew G Knepley + dm - The DM 449188ed4aceSMatthew G Knepley - sf - The PetscSF 449288ed4aceSMatthew G Knepley 449388ed4aceSMatthew G Knepley Level: intermediate 449488ed4aceSMatthew G Knepley 449588ed4aceSMatthew G Knepley Note: Any previous SF is destroyed 449688ed4aceSMatthew G Knepley 4497db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMCreateSectionSF()` 449888ed4aceSMatthew G Knepley @*/ 44991bb6d2a8SBarry Smith PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 45000adebc6cSBarry Smith { 450188ed4aceSMatthew G Knepley PetscFunctionBegin; 450288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4503b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 45049566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) sf)); 45059566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 45061bb6d2a8SBarry Smith dm->sectionSF = sf; 450788ed4aceSMatthew G Knepley PetscFunctionReturn(0); 450888ed4aceSMatthew G Knepley } 450988ed4aceSMatthew G Knepley 451088ed4aceSMatthew G Knepley /*@C 45111bb6d2a8SBarry Smith DMCreateSectionSF - Create the PetscSF encoding the parallel dof overlap for the DM based upon the PetscSections 451288ed4aceSMatthew G Knepley describing the data layout. 451388ed4aceSMatthew G Knepley 451488ed4aceSMatthew G Knepley Input Parameters: 451588ed4aceSMatthew G Knepley + dm - The DM 451688ed4aceSMatthew G Knepley . localSection - PetscSection describing the local data layout 451788ed4aceSMatthew G Knepley - globalSection - PetscSection describing the global data layout 451888ed4aceSMatthew G Knepley 45191bb6d2a8SBarry Smith Notes: One usually uses DMGetSectionSF() to obtain the PetscSF 452088ed4aceSMatthew G Knepley 45211bb6d2a8SBarry Smith Level: developer 45221bb6d2a8SBarry Smith 45231bb6d2a8SBarry Smith Developer Note: Since this routine has for arguments the two sections from the DM and puts the resulting PetscSF 45241bb6d2a8SBarry Smith directly into the DM, perhaps this function should not take the local and global sections as 45251bb6d2a8SBarry Smith input and should just obtain them from the DM? 45261bb6d2a8SBarry Smith 4527db781477SPatrick Sanan .seealso: `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 452888ed4aceSMatthew G Knepley @*/ 45291bb6d2a8SBarry Smith PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 453088ed4aceSMatthew G Knepley { 453188ed4aceSMatthew G Knepley PetscFunctionBegin; 453288ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45339566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 453488ed4aceSMatthew G Knepley PetscFunctionReturn(0); 453588ed4aceSMatthew G Knepley } 4536af122d2aSMatthew G Knepley 4537b21d0597SMatthew G Knepley /*@ 4538b21d0597SMatthew G Knepley DMGetPointSF - Get the PetscSF encoding the parallel section point overlap for the DM. 4539b21d0597SMatthew G Knepley 4540b21d0597SMatthew G Knepley Input Parameter: 4541b21d0597SMatthew G Knepley . dm - The DM 4542b21d0597SMatthew G Knepley 4543b21d0597SMatthew G Knepley Output Parameter: 4544b21d0597SMatthew G Knepley . sf - The PetscSF 4545b21d0597SMatthew G Knepley 4546b21d0597SMatthew G Knepley Level: intermediate 4547b21d0597SMatthew G Knepley 4548b21d0597SMatthew G Knepley Note: This gets a borrowed reference, so the user should not destroy this PetscSF. 4549b21d0597SMatthew G Knepley 4550db781477SPatrick Sanan .seealso: `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4551b21d0597SMatthew G Knepley @*/ 45520adebc6cSBarry Smith PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 45530adebc6cSBarry Smith { 4554b21d0597SMatthew G Knepley PetscFunctionBegin; 4555b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4556b21d0597SMatthew G Knepley PetscValidPointer(sf, 2); 4557b21d0597SMatthew G Knepley *sf = dm->sf; 4558b21d0597SMatthew G Knepley PetscFunctionReturn(0); 4559b21d0597SMatthew G Knepley } 4560b21d0597SMatthew G Knepley 4561057b4bcdSMatthew G Knepley /*@ 4562057b4bcdSMatthew G Knepley DMSetPointSF - Set the PetscSF encoding the parallel section point overlap for the DM. 4563057b4bcdSMatthew G Knepley 4564057b4bcdSMatthew G Knepley Input Parameters: 4565057b4bcdSMatthew G Knepley + dm - The DM 4566057b4bcdSMatthew G Knepley - sf - The PetscSF 4567057b4bcdSMatthew G Knepley 4568057b4bcdSMatthew G Knepley Level: intermediate 4569057b4bcdSMatthew G Knepley 4570db781477SPatrick Sanan .seealso: `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4571057b4bcdSMatthew G Knepley @*/ 45720adebc6cSBarry Smith PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 45730adebc6cSBarry Smith { 4574057b4bcdSMatthew G Knepley PetscFunctionBegin; 4575057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4576b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 45779566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) sf)); 45789566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4579057b4bcdSMatthew G Knepley dm->sf = sf; 4580057b4bcdSMatthew G Knepley PetscFunctionReturn(0); 4581057b4bcdSMatthew G Knepley } 4582057b4bcdSMatthew G Knepley 45834f37162bSMatthew G. Knepley /*@ 45844f37162bSMatthew G. Knepley DMGetNaturalSF - Get the PetscSF encoding the map back to the original mesh ordering 45854f37162bSMatthew G. Knepley 45864f37162bSMatthew G. Knepley Input Parameter: 45874f37162bSMatthew G. Knepley . dm - The DM 45884f37162bSMatthew G. Knepley 45894f37162bSMatthew G. Knepley Output Parameter: 45904f37162bSMatthew G. Knepley . sf - The PetscSF 45914f37162bSMatthew G. Knepley 45924f37162bSMatthew G. Knepley Level: intermediate 45934f37162bSMatthew G. Knepley 45944f37162bSMatthew G. Knepley Note: This gets a borrowed reference, so the user should not destroy this PetscSF. 45954f37162bSMatthew G. Knepley 4596db781477SPatrick Sanan .seealso: `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 45974f37162bSMatthew G. Knepley @*/ 45984f37162bSMatthew G. Knepley PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 45994f37162bSMatthew G. Knepley { 46004f37162bSMatthew G. Knepley PetscFunctionBegin; 46014f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46024f37162bSMatthew G. Knepley PetscValidPointer(sf, 2); 46034f37162bSMatthew G. Knepley *sf = dm->sfNatural; 46044f37162bSMatthew G. Knepley PetscFunctionReturn(0); 46054f37162bSMatthew G. Knepley } 46064f37162bSMatthew G. Knepley 46074f37162bSMatthew G. Knepley /*@ 46084f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 46094f37162bSMatthew G. Knepley 46104f37162bSMatthew G. Knepley Input Parameters: 46114f37162bSMatthew G. Knepley + dm - The DM 46124f37162bSMatthew G. Knepley - sf - The PetscSF 46134f37162bSMatthew G. Knepley 46144f37162bSMatthew G. Knepley Level: intermediate 46154f37162bSMatthew G. Knepley 4616db781477SPatrick Sanan .seealso: `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 46174f37162bSMatthew G. Knepley @*/ 46184f37162bSMatthew G. Knepley PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 46194f37162bSMatthew G. Knepley { 46204f37162bSMatthew G. Knepley PetscFunctionBegin; 46214f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46224f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 46239566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) sf)); 46249566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 46254f37162bSMatthew G. Knepley dm->sfNatural = sf; 46264f37162bSMatthew G. Knepley PetscFunctionReturn(0); 46274f37162bSMatthew G. Knepley } 46284f37162bSMatthew G. Knepley 462934aa8a36SMatthew G. Knepley static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 463034aa8a36SMatthew G. Knepley { 463134aa8a36SMatthew G. Knepley PetscClassId id; 463234aa8a36SMatthew G. Knepley 463334aa8a36SMatthew G. Knepley PetscFunctionBegin; 46349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 463534aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 46369566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 463734aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 46389566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 463917c1d62eSMatthew G. Knepley } else { 46409566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 464134aa8a36SMatthew G. Knepley } 464234aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 464334aa8a36SMatthew G. Knepley } 464434aa8a36SMatthew G. Knepley 464544a7f3ddSMatthew G. Knepley static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 464644a7f3ddSMatthew G. Knepley { 464744a7f3ddSMatthew G. Knepley RegionField *tmpr; 464844a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 464944a7f3ddSMatthew G. Knepley 465044a7f3ddSMatthew G. Knepley PetscFunctionBegin; 465144a7f3ddSMatthew G. Knepley if (Nf >= NfNew) PetscFunctionReturn(0); 46529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 465344a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 4654e0b68406SMatthew Knepley for (f = Nf; f < NfNew; ++f) {tmpr[f].disc = NULL; tmpr[f].label = NULL; tmpr[f].avoidTensor = PETSC_FALSE;} 46559566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 465644a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 465744a7f3ddSMatthew G. Knepley dm->fields = tmpr; 465844a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 465944a7f3ddSMatthew G. Knepley } 466044a7f3ddSMatthew G. Knepley 466144a7f3ddSMatthew G. Knepley /*@ 466244a7f3ddSMatthew G. Knepley DMClearFields - Remove all fields from the DM 466344a7f3ddSMatthew G. Knepley 4664d083f849SBarry Smith Logically collective on dm 466544a7f3ddSMatthew G. Knepley 466644a7f3ddSMatthew G. Knepley Input Parameter: 466744a7f3ddSMatthew G. Knepley . dm - The DM 466844a7f3ddSMatthew G. Knepley 466944a7f3ddSMatthew G. Knepley Level: intermediate 467044a7f3ddSMatthew G. Knepley 4671db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 467244a7f3ddSMatthew G. Knepley @*/ 467344a7f3ddSMatthew G. Knepley PetscErrorCode DMClearFields(DM dm) 467444a7f3ddSMatthew G. Knepley { 467544a7f3ddSMatthew G. Knepley PetscInt f; 467644a7f3ddSMatthew G. Knepley 467744a7f3ddSMatthew G. Knepley PetscFunctionBegin; 467844a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 467944a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 46809566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 46819566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 468244a7f3ddSMatthew G. Knepley } 46839566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 468444a7f3ddSMatthew G. Knepley dm->fields = NULL; 468544a7f3ddSMatthew G. Knepley dm->Nf = 0; 468644a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 468744a7f3ddSMatthew G. Knepley } 468844a7f3ddSMatthew G. Knepley 4689689b5837SMatthew G. Knepley /*@ 4690689b5837SMatthew G. Knepley DMGetNumFields - Get the number of fields in the DM 4691689b5837SMatthew G. Knepley 4692689b5837SMatthew G. Knepley Not collective 4693689b5837SMatthew G. Knepley 4694689b5837SMatthew G. Knepley Input Parameter: 4695689b5837SMatthew G. Knepley . dm - The DM 4696689b5837SMatthew G. Knepley 4697689b5837SMatthew G. Knepley Output Parameter: 4698689b5837SMatthew G. Knepley . Nf - The number of fields 4699689b5837SMatthew G. Knepley 4700689b5837SMatthew G. Knepley Level: intermediate 4701689b5837SMatthew G. Knepley 4702db781477SPatrick Sanan .seealso: `DMSetNumFields()`, `DMSetField()` 4703689b5837SMatthew G. Knepley @*/ 47040f21e855SMatthew G. Knepley PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 47050f21e855SMatthew G. Knepley { 47060f21e855SMatthew G. Knepley PetscFunctionBegin; 47070f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4708534a8f05SLisandro Dalcin PetscValidIntPointer(numFields, 2); 470944a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 4710af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4711af122d2aSMatthew G Knepley } 4712af122d2aSMatthew G Knepley 4713689b5837SMatthew G. Knepley /*@ 4714689b5837SMatthew G. Knepley DMSetNumFields - Set the number of fields in the DM 4715689b5837SMatthew G. Knepley 4716d083f849SBarry Smith Logically collective on dm 4717689b5837SMatthew G. Knepley 4718689b5837SMatthew G. Knepley Input Parameters: 4719689b5837SMatthew G. Knepley + dm - The DM 4720689b5837SMatthew G. Knepley - Nf - The number of fields 4721689b5837SMatthew G. Knepley 4722689b5837SMatthew G. Knepley Level: intermediate 4723689b5837SMatthew G. Knepley 4724db781477SPatrick Sanan .seealso: `DMGetNumFields()`, `DMSetField()` 4725689b5837SMatthew G. Knepley @*/ 4726af122d2aSMatthew G Knepley PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4727af122d2aSMatthew G Knepley { 47280f21e855SMatthew G. Knepley PetscInt Nf, f; 4729af122d2aSMatthew G Knepley 4730af122d2aSMatthew G Knepley PetscFunctionBegin; 4731af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47329566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 47330f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 47340f21e855SMatthew G. Knepley PetscContainer obj; 47350f21e855SMatthew G. Knepley 47369566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject) dm), &obj)); 47379566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject) obj)); 47389566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4739af122d2aSMatthew G Knepley } 4740af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4741af122d2aSMatthew G Knepley } 4742af122d2aSMatthew G Knepley 4743c1929be8SMatthew G. Knepley /*@ 4744c1929be8SMatthew G. Knepley DMGetField - Return the discretization object for a given DM field 4745c1929be8SMatthew G. Knepley 4746c1929be8SMatthew G. Knepley Not collective 4747c1929be8SMatthew G. Knepley 4748c1929be8SMatthew G. Knepley Input Parameters: 4749c1929be8SMatthew G. Knepley + dm - The DM 4750c1929be8SMatthew G. Knepley - f - The field number 4751c1929be8SMatthew G. Knepley 475244a7f3ddSMatthew G. Knepley Output Parameters: 475344a7f3ddSMatthew G. Knepley + label - The label indicating the support of the field, or NULL for the entire mesh 475444a7f3ddSMatthew G. Knepley - field - The discretization object 4755c1929be8SMatthew G. Knepley 475644a7f3ddSMatthew G. Knepley Level: intermediate 4757c1929be8SMatthew G. Knepley 4758db781477SPatrick Sanan .seealso: `DMAddField()`, `DMSetField()` 4759c1929be8SMatthew G. Knepley @*/ 476044a7f3ddSMatthew G. Knepley PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *field) 4761af122d2aSMatthew G Knepley { 4762af122d2aSMatthew G Knepley PetscFunctionBegin; 4763af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4764064a246eSJacob Faibussowitsch PetscValidPointer(field, 4); 47657a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 476644a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 476744a7f3ddSMatthew G. Knepley if (field) *field = dm->fields[f].disc; 4768decb47aaSMatthew G. Knepley PetscFunctionReturn(0); 4769decb47aaSMatthew G. Knepley } 4770decb47aaSMatthew G. Knepley 4771083401c6SMatthew G. Knepley /* Does not clear the DS */ 4772083401c6SMatthew G. Knepley PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject field) 4773083401c6SMatthew G. Knepley { 4774083401c6SMatthew G. Knepley PetscFunctionBegin; 47759566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f+1)); 47769566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 47779566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 4778083401c6SMatthew G. Knepley dm->fields[f].label = label; 4779083401c6SMatthew G. Knepley dm->fields[f].disc = field; 47809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) label)); 47819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) field)); 4782083401c6SMatthew G. Knepley PetscFunctionReturn(0); 4783083401c6SMatthew G. Knepley } 4784083401c6SMatthew G. Knepley 4785c1929be8SMatthew G. Knepley /*@ 4786c1929be8SMatthew G. Knepley DMSetField - Set the discretization object for a given DM field 4787c1929be8SMatthew G. Knepley 4788d083f849SBarry Smith Logically collective on dm 4789c1929be8SMatthew G. Knepley 4790c1929be8SMatthew G. Knepley Input Parameters: 4791c1929be8SMatthew G. Knepley + dm - The DM 4792c1929be8SMatthew G. Knepley . f - The field number 479344a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 4794c1929be8SMatthew G. Knepley - field - The discretization object 4795c1929be8SMatthew G. Knepley 479644a7f3ddSMatthew G. Knepley Level: intermediate 4797c1929be8SMatthew G. Knepley 4798db781477SPatrick Sanan .seealso: `DMAddField()`, `DMGetField()` 4799c1929be8SMatthew G. Knepley @*/ 480044a7f3ddSMatthew G. Knepley PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject field) 4801decb47aaSMatthew G. Knepley { 4802decb47aaSMatthew G. Knepley PetscFunctionBegin; 4803decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4804e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 480544a7f3ddSMatthew G. Knepley PetscValidHeader(field, 4); 48067a8be351SBarry Smith PetscCheck(f >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 48079566063dSJacob Faibussowitsch PetscCall(DMSetField_Internal(dm, f, label, field)); 48089566063dSJacob Faibussowitsch PetscCall(DMSetDefaultAdjacency_Private(dm, f, field)); 48099566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 481044a7f3ddSMatthew G. Knepley PetscFunctionReturn(0); 481144a7f3ddSMatthew G. Knepley } 481244a7f3ddSMatthew G. Knepley 481344a7f3ddSMatthew G. Knepley /*@ 481444a7f3ddSMatthew G. Knepley DMAddField - Add the discretization object for the given DM field 481544a7f3ddSMatthew G. Knepley 4816d083f849SBarry Smith Logically collective on dm 481744a7f3ddSMatthew G. Knepley 481844a7f3ddSMatthew G. Knepley Input Parameters: 481944a7f3ddSMatthew G. Knepley + dm - The DM 482044a7f3ddSMatthew G. Knepley . label - The label indicating the support of the field, or NULL for the entire mesh 482144a7f3ddSMatthew G. Knepley - field - The discretization object 482244a7f3ddSMatthew G. Knepley 482344a7f3ddSMatthew G. Knepley Level: intermediate 482444a7f3ddSMatthew G. Knepley 4825db781477SPatrick Sanan .seealso: `DMSetField()`, `DMGetField()` 482644a7f3ddSMatthew G. Knepley @*/ 482744a7f3ddSMatthew G. Knepley PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject field) 482844a7f3ddSMatthew G. Knepley { 482944a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 483044a7f3ddSMatthew G. Knepley 483144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 483244a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4833064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 483444a7f3ddSMatthew G. Knepley PetscValidHeader(field, 3); 48359566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf+1)); 483644a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 483744a7f3ddSMatthew G. Knepley dm->fields[Nf].disc = field; 48389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) label)); 48399566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) field)); 48409566063dSJacob Faibussowitsch PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, field)); 48419566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 4842af122d2aSMatthew G Knepley PetscFunctionReturn(0); 4843af122d2aSMatthew G Knepley } 48446636e97aSMatthew G Knepley 4845e5e52638SMatthew G. Knepley /*@ 4846e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 4847e0b68406SMatthew Knepley 4848e0b68406SMatthew Knepley Logically collective on dm 4849e0b68406SMatthew Knepley 4850e0b68406SMatthew Knepley Input Parameters: 4851e0b68406SMatthew Knepley + dm - The DM 4852e0b68406SMatthew Knepley . f - The field index 4853e0b68406SMatthew Knepley - avoidTensor - The flag to avoid defining the field on tensor cells 4854e0b68406SMatthew Knepley 4855e0b68406SMatthew Knepley Level: intermediate 4856e0b68406SMatthew Knepley 4857db781477SPatrick Sanan .seealso: `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 4858e0b68406SMatthew Knepley @*/ 4859e0b68406SMatthew Knepley PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 4860e0b68406SMatthew Knepley { 4861e0b68406SMatthew Knepley PetscFunctionBegin; 486263a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 4863e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 4864e0b68406SMatthew Knepley PetscFunctionReturn(0); 4865e0b68406SMatthew Knepley } 4866e0b68406SMatthew Knepley 4867e0b68406SMatthew Knepley /*@ 4868e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 4869e0b68406SMatthew Knepley 4870e0b68406SMatthew Knepley Logically collective on dm 4871e0b68406SMatthew Knepley 4872e0b68406SMatthew Knepley Input Parameters: 4873e0b68406SMatthew Knepley + dm - The DM 4874e0b68406SMatthew Knepley - f - The field index 4875e0b68406SMatthew Knepley 4876e0b68406SMatthew Knepley Output Parameter: 4877e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 4878e0b68406SMatthew Knepley 4879e0b68406SMatthew Knepley Level: intermediate 4880e0b68406SMatthew Knepley 4881db781477SPatrick Sanan .seealso: `DMSetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 4882e0b68406SMatthew Knepley @*/ 4883e0b68406SMatthew Knepley PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 4884e0b68406SMatthew Knepley { 4885e0b68406SMatthew Knepley PetscFunctionBegin; 488663a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 4887e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 4888e0b68406SMatthew Knepley PetscFunctionReturn(0); 4889e0b68406SMatthew Knepley } 4890e0b68406SMatthew Knepley 4891e0b68406SMatthew Knepley /*@ 4892e5e52638SMatthew G. Knepley DMCopyFields - Copy the discretizations for the DM into another DM 4893e5e52638SMatthew G. Knepley 4894d083f849SBarry Smith Collective on dm 4895e5e52638SMatthew G. Knepley 4896e5e52638SMatthew G. Knepley Input Parameter: 4897e5e52638SMatthew G. Knepley . dm - The DM 4898e5e52638SMatthew G. Knepley 4899e5e52638SMatthew G. Knepley Output Parameter: 4900e5e52638SMatthew G. Knepley . newdm - The DM 4901e5e52638SMatthew G. Knepley 4902e5e52638SMatthew G. Knepley Level: advanced 4903e5e52638SMatthew G. Knepley 4904db781477SPatrick Sanan .seealso: `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 4905e5e52638SMatthew G. Knepley @*/ 4906e5e52638SMatthew G. Knepley PetscErrorCode DMCopyFields(DM dm, DM newdm) 4907e5e52638SMatthew G. Knepley { 4908e5e52638SMatthew G. Knepley PetscInt Nf, f; 4909e5e52638SMatthew G. Knepley 4910e5e52638SMatthew G. Knepley PetscFunctionBegin; 4911e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 49129566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49139566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 4914e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 4915e5e52638SMatthew G. Knepley DMLabel label; 4916e5e52638SMatthew G. Knepley PetscObject field; 491734aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 4918e5e52638SMatthew G. Knepley 49199566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 49209566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 49219566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 49229566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 492334aa8a36SMatthew G. Knepley } 492434aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 492534aa8a36SMatthew G. Knepley } 492634aa8a36SMatthew G. Knepley 492734aa8a36SMatthew G. Knepley /*@ 492834aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 492934aa8a36SMatthew G. Knepley 493034aa8a36SMatthew G. Knepley Not collective 493134aa8a36SMatthew G. Knepley 493234aa8a36SMatthew G. Knepley Input Parameters: 493334aa8a36SMatthew G. Knepley + dm - The DM object 493434aa8a36SMatthew G. Knepley - f - The field number, or PETSC_DEFAULT for the default adjacency 493534aa8a36SMatthew G. Knepley 4936d8d19677SJose E. Roman Output Parameters: 493734aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 493834aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 493934aa8a36SMatthew G. Knepley 494034aa8a36SMatthew G. Knepley Notes: 494134aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 494234aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 494334aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 4944979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 494534aa8a36SMatthew G. Knepley 494634aa8a36SMatthew G. Knepley Level: developer 494734aa8a36SMatthew G. Knepley 4948db781477SPatrick Sanan .seealso: `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 494934aa8a36SMatthew G. Knepley @*/ 495034aa8a36SMatthew G. Knepley PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 495134aa8a36SMatthew G. Knepley { 495234aa8a36SMatthew G. Knepley PetscFunctionBegin; 495334aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4954534a8f05SLisandro Dalcin if (useCone) PetscValidBoolPointer(useCone, 3); 4955534a8f05SLisandro Dalcin if (useClosure) PetscValidBoolPointer(useClosure, 4); 495634aa8a36SMatthew G. Knepley if (f < 0) { 495734aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 495834aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 495934aa8a36SMatthew G. Knepley } else { 496034aa8a36SMatthew G. Knepley PetscInt Nf; 496134aa8a36SMatthew G. Knepley 49629566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49637a8be351SBarry Smith PetscCheck(f < Nf,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 496434aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 496534aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 496634aa8a36SMatthew G. Knepley } 496734aa8a36SMatthew G. Knepley PetscFunctionReturn(0); 496834aa8a36SMatthew G. Knepley } 496934aa8a36SMatthew G. Knepley 497034aa8a36SMatthew G. Knepley /*@ 497134aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 497234aa8a36SMatthew G. Knepley 497334aa8a36SMatthew G. Knepley Not collective 497434aa8a36SMatthew G. Knepley 497534aa8a36SMatthew G. Knepley Input Parameters: 497634aa8a36SMatthew G. Knepley + dm - The DM object 497734aa8a36SMatthew G. Knepley . f - The field number 497834aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 497934aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 498034aa8a36SMatthew G. Knepley 498134aa8a36SMatthew G. Knepley Notes: 498234aa8a36SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 498334aa8a36SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 498434aa8a36SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 4985979e053dSMatthew G. Knepley Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 498634aa8a36SMatthew G. Knepley 498734aa8a36SMatthew G. Knepley Level: developer 498834aa8a36SMatthew G. Knepley 4989db781477SPatrick Sanan .seealso: `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 499034aa8a36SMatthew G. Knepley @*/ 499134aa8a36SMatthew G. Knepley PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 499234aa8a36SMatthew G. Knepley { 499334aa8a36SMatthew G. Knepley PetscFunctionBegin; 499434aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 499534aa8a36SMatthew G. Knepley if (f < 0) { 499634aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 499734aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 499834aa8a36SMatthew G. Knepley } else { 499934aa8a36SMatthew G. Knepley PetscInt Nf; 500034aa8a36SMatthew G. Knepley 50019566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 50027a8be351SBarry Smith PetscCheck(f < Nf,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 500334aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 500434aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5005e5e52638SMatthew G. Knepley } 5006e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5007e5e52638SMatthew G. Knepley } 5008e5e52638SMatthew G. Knepley 5009b0441da4SMatthew G. Knepley /*@ 5010b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5011b0441da4SMatthew G. Knepley 5012b0441da4SMatthew G. Knepley Not collective 5013b0441da4SMatthew G. Knepley 5014f899ff85SJose E. Roman Input Parameter: 5015b0441da4SMatthew G. Knepley . dm - The DM object 5016b0441da4SMatthew G. Knepley 5017d8d19677SJose E. Roman Output Parameters: 5018b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5019b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5020b0441da4SMatthew G. Knepley 5021b0441da4SMatthew G. Knepley Notes: 5022b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5023b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5024b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5025b0441da4SMatthew G. Knepley 5026b0441da4SMatthew G. Knepley Level: developer 5027b0441da4SMatthew G. Knepley 5028db781477SPatrick Sanan .seealso: `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5029b0441da4SMatthew G. Knepley @*/ 5030b0441da4SMatthew G. Knepley PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5031b0441da4SMatthew G. Knepley { 5032b0441da4SMatthew G. Knepley PetscInt Nf; 5033b0441da4SMatthew G. Knepley 5034b0441da4SMatthew G. Knepley PetscFunctionBegin; 5035b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5036064a246eSJacob Faibussowitsch if (useCone) PetscValidBoolPointer(useCone, 2); 5037064a246eSJacob Faibussowitsch if (useClosure) PetscValidBoolPointer(useClosure, 3); 50389566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5039b0441da4SMatthew G. Knepley if (!Nf) { 50409566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5041b0441da4SMatthew G. Knepley } else { 50429566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5043b0441da4SMatthew G. Knepley } 5044b0441da4SMatthew G. Knepley PetscFunctionReturn(0); 5045b0441da4SMatthew G. Knepley } 5046b0441da4SMatthew G. Knepley 5047b0441da4SMatthew G. Knepley /*@ 5048b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5049b0441da4SMatthew G. Knepley 5050b0441da4SMatthew G. Knepley Not collective 5051b0441da4SMatthew G. Knepley 5052b0441da4SMatthew G. Knepley Input Parameters: 5053b0441da4SMatthew G. Knepley + dm - The DM object 5054b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5055b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5056b0441da4SMatthew G. Knepley 5057b0441da4SMatthew G. Knepley Notes: 5058b0441da4SMatthew G. Knepley $ FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 5059b0441da4SMatthew G. Knepley $ FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 5060b0441da4SMatthew G. Knepley $ FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 5061b0441da4SMatthew G. Knepley 5062b0441da4SMatthew G. Knepley Level: developer 5063b0441da4SMatthew G. Knepley 5064db781477SPatrick Sanan .seealso: `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5065b0441da4SMatthew G. Knepley @*/ 5066b0441da4SMatthew G. Knepley PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5067b0441da4SMatthew G. Knepley { 5068b0441da4SMatthew G. Knepley PetscInt Nf; 5069b0441da4SMatthew G. Knepley 5070b0441da4SMatthew G. Knepley PetscFunctionBegin; 5071b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 50729566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5073b0441da4SMatthew G. Knepley if (!Nf) { 50749566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5075b0441da4SMatthew G. Knepley } else { 50769566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5077e5e52638SMatthew G. Knepley } 5078e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5079e5e52638SMatthew G. Knepley } 5080e5e52638SMatthew G. Knepley 5081799db056SMatthew G. Knepley PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5082783e2ec8SMatthew G. Knepley { 5083799db056SMatthew G. Knepley DM plex; 5084799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5085799db056SMatthew G. Knepley const char **names; 5086799db056SMatthew G. Knepley char *sendNames, *recvNames; 5087799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5088799db056SMatthew G. Knepley size_t len; 5089799db056SMatthew G. Knepley MPI_Comm comm; 5090799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5091783e2ec8SMatthew G. Knepley 5092783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5093799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 5094799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5095799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5096799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5097799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5098799db056SMatthew G. Knepley PetscDS dsBC; 5099799db056SMatthew G. Knepley PetscInt numBd; 5100799db056SMatthew G. Knepley 5101799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5102799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5103799db056SMatthew G. Knepley maxLabels += numBd; 5104799db056SMatthew G. Knepley } 5105799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5106799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5107799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5108799db056SMatthew G. Knepley PetscDS dsBC; 5109799db056SMatthew G. Knepley PetscInt numBd, bd; 5110799db056SMatthew G. Knepley 5111799db056SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC)); 5112799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5113799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5114799db056SMatthew G. Knepley DMLabel label; 5115799db056SMatthew G. Knepley PetscInt field; 5116799db056SMatthew G. Knepley PetscObject obj; 5117799db056SMatthew G. Knepley PetscClassId id; 5118799db056SMatthew G. Knepley 5119799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 51209566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 51219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5122799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 5123799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) if (labels[l] == label) break; 5124799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5125783e2ec8SMatthew G. Knepley } 5126799db056SMatthew G. Knepley } 5127799db056SMatthew G. Knepley /* Get label names */ 5128799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5129799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject) labels[l], &names[l])); 5130799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) {PetscCall(PetscStrlen(names[l], &len)); maxLen = PetscMax(maxLen, (PetscInt) len+2);} 5131799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5132799db056SMatthew G. Knepley PetscCallMPI(MPI_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5133799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5134799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscStrcpy(&sendNames[gmaxLen*l], names[l])); 5135799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5136799db056SMatthew G. Knepley /* Put all names on all processes */ 5137799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size+1, &displs)); 5138799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5139799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p+1] = displs[p] + counts[p]; 5140799db056SMatthew G. Knepley gNl = displs[size]; 5141799db056SMatthew G. Knepley for (p = 0; p < size; ++p) {counts[p] *= gmaxLen; displs[p] *= gmaxLen;} 5142799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5143799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5144799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5145799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5146799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5147799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l*gmaxLen], &glabels[gl])); 5148799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l*gmaxLen], rank); 5149799db056SMatthew G. Knepley for (m = 0; m < gl; ++m) if (glabels[m] == glabels[gl]) continue; 51509566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5151799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 51529566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5153799db056SMatthew G. Knepley ++gl; 5154783e2ec8SMatthew G. Knepley } 5155799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 5156783e2ec8SMatthew G. Knepley PetscFunctionReturn(0); 5157783e2ec8SMatthew G. Knepley } 5158783e2ec8SMatthew G. Knepley 5159e5e52638SMatthew G. Knepley static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5160e5e52638SMatthew G. Knepley { 5161e5e52638SMatthew G. Knepley DMSpace *tmpd; 5162e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5163e5e52638SMatthew G. Knepley 5164e5e52638SMatthew G. Knepley PetscFunctionBegin; 5165e5e52638SMatthew G. Knepley if (Nds >= NdsNew) PetscFunctionReturn(0); 51669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5167e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 5168b3cf3223SMatthew G. Knepley for (s = Nds; s < NdsNew; ++s) {tmpd[s].ds = NULL; tmpd[s].label = NULL; tmpd[s].fields = NULL;} 51699566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5170e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5171e5e52638SMatthew G. Knepley dm->probs = tmpd; 5172e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5173e5e52638SMatthew G. Knepley } 5174e5e52638SMatthew G. Knepley 5175e5e52638SMatthew G. Knepley /*@ 5176e5e52638SMatthew G. Knepley DMGetNumDS - Get the number of discrete systems in the DM 5177e5e52638SMatthew G. Knepley 5178e5e52638SMatthew G. Knepley Not collective 5179e5e52638SMatthew G. Knepley 5180e5e52638SMatthew G. Knepley Input Parameter: 5181e5e52638SMatthew G. Knepley . dm - The DM 5182e5e52638SMatthew G. Knepley 5183e5e52638SMatthew G. Knepley Output Parameter: 5184e5e52638SMatthew G. Knepley . Nds - The number of PetscDS objects 5185e5e52638SMatthew G. Knepley 5186e5e52638SMatthew G. Knepley Level: intermediate 5187e5e52638SMatthew G. Knepley 5188db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMGetCellDS()` 5189e5e52638SMatthew G. Knepley @*/ 5190e5e52638SMatthew G. Knepley PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5191e5e52638SMatthew G. Knepley { 5192e5e52638SMatthew G. Knepley PetscFunctionBegin; 5193e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5194534a8f05SLisandro Dalcin PetscValidIntPointer(Nds, 2); 5195e5e52638SMatthew G. Knepley *Nds = dm->Nds; 5196e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5197e5e52638SMatthew G. Knepley } 5198e5e52638SMatthew G. Knepley 5199e5e52638SMatthew G. Knepley /*@ 5200e5e52638SMatthew G. Knepley DMClearDS - Remove all discrete systems from the DM 5201e5e52638SMatthew G. Knepley 5202d083f849SBarry Smith Logically collective on dm 5203e5e52638SMatthew G. Knepley 5204e5e52638SMatthew G. Knepley Input Parameter: 5205e5e52638SMatthew G. Knepley . dm - The DM 5206e5e52638SMatthew G. Knepley 5207e5e52638SMatthew G. Knepley Level: intermediate 5208e5e52638SMatthew G. Knepley 5209db781477SPatrick Sanan .seealso: `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5210e5e52638SMatthew G. Knepley @*/ 5211e5e52638SMatthew G. Knepley PetscErrorCode DMClearDS(DM dm) 5212e5e52638SMatthew G. Knepley { 5213e5e52638SMatthew G. Knepley PetscInt s; 5214e5e52638SMatthew G. Knepley 5215e5e52638SMatthew G. Knepley PetscFunctionBegin; 5216e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5217e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 52189566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 52199566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 52209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5221e5e52638SMatthew G. Knepley } 52229566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5223e5e52638SMatthew G. Knepley dm->probs = NULL; 5224e5e52638SMatthew G. Knepley dm->Nds = 0; 5225e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5226e5e52638SMatthew G. Knepley } 5227e5e52638SMatthew G. Knepley 5228e5e52638SMatthew G. Knepley /*@ 5229e5e52638SMatthew G. Knepley DMGetDS - Get the default PetscDS 5230e5e52638SMatthew G. Knepley 5231e5e52638SMatthew G. Knepley Not collective 5232e5e52638SMatthew G. Knepley 5233e5e52638SMatthew G. Knepley Input Parameter: 5234e5e52638SMatthew G. Knepley . dm - The DM 5235e5e52638SMatthew G. Knepley 5236e5e52638SMatthew G. Knepley Output Parameter: 5237e5e52638SMatthew G. Knepley . prob - The default PetscDS 5238e5e52638SMatthew G. Knepley 5239e5e52638SMatthew G. Knepley Level: intermediate 5240e5e52638SMatthew G. Knepley 5241db781477SPatrick Sanan .seealso: `DMGetCellDS()`, `DMGetRegionDS()` 5242e5e52638SMatthew G. Knepley @*/ 5243e5e52638SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *prob) 5244e5e52638SMatthew G. Knepley { 5245e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5246e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5247e5e52638SMatthew G. Knepley PetscValidPointer(prob, 2); 5248b0143b4dSMatthew G. Knepley if (dm->Nds <= 0) { 5249b0143b4dSMatthew G. Knepley PetscDS ds; 5250b0143b4dSMatthew G. Knepley 52519566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 52529566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, NULL, ds)); 52539566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5254b0143b4dSMatthew G. Knepley } 5255b0143b4dSMatthew G. Knepley *prob = dm->probs[0].ds; 5256e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5257e5e52638SMatthew G. Knepley } 5258e5e52638SMatthew G. Knepley 5259e5e52638SMatthew G. Knepley /*@ 5260e5e52638SMatthew G. Knepley DMGetCellDS - Get the PetscDS defined on a given cell 5261e5e52638SMatthew G. Knepley 5262e5e52638SMatthew G. Knepley Not collective 5263e5e52638SMatthew G. Knepley 5264e5e52638SMatthew G. Knepley Input Parameters: 5265e5e52638SMatthew G. Knepley + dm - The DM 5266e5e52638SMatthew G. Knepley - point - Cell for the DS 5267e5e52638SMatthew G. Knepley 5268e5e52638SMatthew G. Knepley Output Parameter: 5269e5e52638SMatthew G. Knepley . prob - The PetscDS defined on the given cell 5270e5e52638SMatthew G. Knepley 5271e5e52638SMatthew G. Knepley Level: developer 5272e5e52638SMatthew G. Knepley 5273db781477SPatrick Sanan .seealso: `DMGetDS()`, `DMSetRegionDS()` 5274e5e52638SMatthew G. Knepley @*/ 5275e5e52638SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *prob) 5276e5e52638SMatthew G. Knepley { 5277e5e52638SMatthew G. Knepley PetscDS probDef = NULL; 5278e5e52638SMatthew G. Knepley PetscInt s; 5279e5e52638SMatthew G. Knepley 5280e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5281e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5282e5e52638SMatthew G. Knepley PetscValidPointer(prob, 3); 528363a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 5284e5e52638SMatthew G. Knepley *prob = NULL; 5285e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5286e5e52638SMatthew G. Knepley PetscInt val; 5287e5e52638SMatthew G. Knepley 5288e5e52638SMatthew G. Knepley if (!dm->probs[s].label) {probDef = dm->probs[s].ds;} 5289e5e52638SMatthew G. Knepley else { 52909566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 5291e5e52638SMatthew G. Knepley if (val >= 0) {*prob = dm->probs[s].ds; break;} 5292e5e52638SMatthew G. Knepley } 5293e5e52638SMatthew G. Knepley } 5294e5e52638SMatthew G. Knepley if (!*prob) *prob = probDef; 5295e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5296e5e52638SMatthew G. Knepley } 5297e5e52638SMatthew G. Knepley 5298e5e52638SMatthew G. Knepley /*@ 5299e5e52638SMatthew G. Knepley DMGetRegionDS - Get the PetscDS for a given mesh region, defined by a DMLabel 5300e5e52638SMatthew G. Knepley 5301e5e52638SMatthew G. Knepley Not collective 5302e5e52638SMatthew G. Knepley 5303e5e52638SMatthew G. Knepley Input Parameters: 5304e5e52638SMatthew G. Knepley + dm - The DM 5305e5e52638SMatthew G. Knepley - label - The DMLabel defining the mesh region, or NULL for the entire mesh 5306e5e52638SMatthew G. Knepley 5307b3cf3223SMatthew G. Knepley Output Parameters: 5308b3cf3223SMatthew G. Knepley + fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5309b3cf3223SMatthew G. Knepley - prob - The PetscDS defined on the given region, or NULL 5310e5e52638SMatthew G. Knepley 5311154ca461SJed Brown Note: 5312154ca461SJed Brown If a non-NULL label is given, but there is no PetscDS on that specific label, 5313154ca461SJed Brown the PetscDS for the full domain (if present) is returned. Returns with 5314154ca461SJed Brown fields=NULL and prob=NULL if there is no PetscDS for the full domain. 5315e5e52638SMatthew G. Knepley 5316e5e52638SMatthew G. Knepley Level: advanced 5317e5e52638SMatthew G. Knepley 5318db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5319e5e52638SMatthew G. Knepley @*/ 5320b3cf3223SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds) 5321e5e52638SMatthew G. Knepley { 5322e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5323e5e52638SMatthew G. Knepley 5324e5e52638SMatthew G. Knepley PetscFunctionBegin; 5325e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5326e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5327b3cf3223SMatthew G. Knepley if (fields) {PetscValidPointer(fields, 3); *fields = NULL;} 5328b3cf3223SMatthew G. Knepley if (ds) {PetscValidPointer(ds, 4); *ds = NULL;} 5329e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5330154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5331b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5332b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 5333154ca461SJed Brown if (dm->probs[s].label) PetscFunctionReturn(0); 5334b3cf3223SMatthew G. Knepley } 5335e5e52638SMatthew G. Knepley } 53362df9ee95SMatthew G. Knepley PetscFunctionReturn(0); 5337e5e52638SMatthew G. Knepley } 5338e5e52638SMatthew G. Knepley 5339e5e52638SMatthew G. Knepley /*@ 5340083401c6SMatthew G. Knepley DMSetRegionDS - Set the PetscDS for a given mesh region, defined by a DMLabel 5341083401c6SMatthew G. Knepley 5342083401c6SMatthew G. Knepley Collective on dm 5343083401c6SMatthew G. Knepley 5344083401c6SMatthew G. Knepley Input Parameters: 5345083401c6SMatthew G. Knepley + dm - The DM 5346083401c6SMatthew G. Knepley . label - The DMLabel defining the mesh region, or NULL for the entire mesh 5347083401c6SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL for all fields 5348083401c6SMatthew G. Knepley - prob - The PetscDS defined on the given cell 5349083401c6SMatthew G. Knepley 5350083401c6SMatthew G. Knepley Note: If the label has a DS defined, it will be replaced. Otherwise, it will be added to the DM. If DS is replaced, 5351083401c6SMatthew G. Knepley the fields argument is ignored. 5352083401c6SMatthew G. Knepley 5353083401c6SMatthew G. Knepley Level: advanced 5354083401c6SMatthew G. Knepley 5355db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5356083401c6SMatthew G. Knepley @*/ 5357083401c6SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds) 5358083401c6SMatthew G. Knepley { 5359083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5360083401c6SMatthew G. Knepley 5361083401c6SMatthew G. Knepley PetscFunctionBegin; 5362083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5363083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5364064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 5365083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5366083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 53679566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 5368083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 5369083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5370083401c6SMatthew G. Knepley } 5371083401c6SMatthew G. Knepley } 53729566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds+1)); 53739566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) label)); 53749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) fields)); 53759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) ds)); 5376083401c6SMatthew G. Knepley if (!label) { 5377083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5378083401c6SMatthew G. Knepley for (s = Nds-1; s >=0; --s) dm->probs[s+1] = dm->probs[s]; 5379083401c6SMatthew G. Knepley Nds = 0; 5380083401c6SMatthew G. Knepley } 5381083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5382083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5383083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 5384083401c6SMatthew G. Knepley PetscFunctionReturn(0); 5385083401c6SMatthew G. Knepley } 5386083401c6SMatthew G. Knepley 5387083401c6SMatthew G. Knepley /*@ 5388e5e52638SMatthew G. Knepley DMGetRegionNumDS - Get the PetscDS for a given mesh region, defined by the region number 5389e5e52638SMatthew G. Knepley 5390e5e52638SMatthew G. Knepley Not collective 5391e5e52638SMatthew G. Knepley 5392e5e52638SMatthew G. Knepley Input Parameters: 5393e5e52638SMatthew G. Knepley + dm - The DM 5394e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5395e5e52638SMatthew G. Knepley 5396e5e52638SMatthew G. Knepley Output Parameters: 5397b3cf3223SMatthew G. Knepley + label - The region label, or NULL 5398b3cf3223SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL 5399083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL 5400e5e52638SMatthew G. Knepley 5401e5e52638SMatthew G. Knepley Level: advanced 5402e5e52638SMatthew G. Knepley 5403db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5404e5e52638SMatthew G. Knepley @*/ 5405b3cf3223SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds) 5406e5e52638SMatthew G. Knepley { 5407e5e52638SMatthew G. Knepley PetscInt Nds; 5408e5e52638SMatthew G. Knepley 5409e5e52638SMatthew G. Knepley PetscFunctionBegin; 5410e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54119566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 541263a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5413e5e52638SMatthew G. Knepley if (label) { 5414e5e52638SMatthew G. Knepley PetscValidPointer(label, 3); 5415e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5416e5e52638SMatthew G. Knepley } 5417b3cf3223SMatthew G. Knepley if (fields) { 5418b3cf3223SMatthew G. Knepley PetscValidPointer(fields, 4); 5419b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5420b3cf3223SMatthew G. Knepley } 5421e5e52638SMatthew G. Knepley if (ds) { 5422b3cf3223SMatthew G. Knepley PetscValidPointer(ds, 5); 5423e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5424e5e52638SMatthew G. Knepley } 5425e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5426e5e52638SMatthew G. Knepley } 5427e5e52638SMatthew G. Knepley 5428e5e52638SMatthew G. Knepley /*@ 5429083401c6SMatthew G. Knepley DMSetRegionNumDS - Set the PetscDS for a given mesh region, defined by the region number 5430e5e52638SMatthew G. Knepley 5431083401c6SMatthew G. Knepley Not collective 5432e5e52638SMatthew G. Knepley 5433e5e52638SMatthew G. Knepley Input Parameters: 5434e5e52638SMatthew G. Knepley + dm - The DM 5435083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 5436083401c6SMatthew G. Knepley . label - The region label, or NULL 5437083401c6SMatthew G. Knepley . fields - The IS containing the DM field numbers for the fields in this DS, or NULL to prevent setting 5438083401c6SMatthew G. Knepley - ds - The PetscDS defined on the given region, or NULL to prevent setting 5439e5e52638SMatthew G. Knepley 5440e5e52638SMatthew G. Knepley Level: advanced 5441e5e52638SMatthew G. Knepley 5442db781477SPatrick Sanan .seealso: `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5443e5e52638SMatthew G. Knepley @*/ 5444083401c6SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds) 5445e5e52638SMatthew G. Knepley { 5446083401c6SMatthew G. Knepley PetscInt Nds; 5447e5e52638SMatthew G. Knepley 5448e5e52638SMatthew G. Knepley PetscFunctionBegin; 5449e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5450083401c6SMatthew G. Knepley if (label) {PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3);} 54519566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 545263a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds),PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 54539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) label)); 54549566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5455083401c6SMatthew G. Knepley dm->probs[num].label = label; 5456083401c6SMatthew G. Knepley if (fields) { 5457083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 54589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) fields)); 54599566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5460083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5461e5e52638SMatthew G. Knepley } 5462083401c6SMatthew G. Knepley if (ds) { 5463083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 54649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) ds)); 54659566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5466083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5467083401c6SMatthew G. Knepley } 5468e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5469e5e52638SMatthew G. Knepley } 5470e5e52638SMatthew G. Knepley 5471e5e52638SMatthew G. Knepley /*@ 54721d3af9e0SMatthew G. Knepley DMFindRegionNum - Find the region number for a given PetscDS, or -1 if it is not found. 54731d3af9e0SMatthew G. Knepley 54741d3af9e0SMatthew G. Knepley Not collective 54751d3af9e0SMatthew G. Knepley 54761d3af9e0SMatthew G. Knepley Input Parameters: 54771d3af9e0SMatthew G. Knepley + dm - The DM 54781d3af9e0SMatthew G. Knepley - ds - The PetscDS defined on the given region 54791d3af9e0SMatthew G. Knepley 54801d3af9e0SMatthew G. Knepley Output Parameter: 54811d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 54821d3af9e0SMatthew G. Knepley 54831d3af9e0SMatthew G. Knepley Level: advanced 54841d3af9e0SMatthew G. Knepley 5485db781477SPatrick Sanan .seealso: `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 54861d3af9e0SMatthew G. Knepley @*/ 54871d3af9e0SMatthew G. Knepley PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 54881d3af9e0SMatthew G. Knepley { 54891d3af9e0SMatthew G. Knepley PetscInt Nds, n; 54901d3af9e0SMatthew G. Knepley 54911d3af9e0SMatthew G. Knepley PetscFunctionBegin; 54921d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54931d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 5494dadcf809SJacob Faibussowitsch PetscValidIntPointer(num, 3); 54959566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 54961d3af9e0SMatthew G. Knepley for (n = 0; n < Nds; ++n) if (ds == dm->probs[n].ds) break; 54971d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 54981d3af9e0SMatthew G. Knepley else *num = n; 54991d3af9e0SMatthew G. Knepley PetscFunctionReturn(0); 55001d3af9e0SMatthew G. Knepley } 55011d3af9e0SMatthew G. Knepley 55022df84da0SMatthew G. Knepley /*@C 55032df84da0SMatthew G. Knepley DMCreateFEDefault - Create a PetscFE based on the celltype for the mesh 55042df84da0SMatthew G. Knepley 55052df84da0SMatthew G. Knepley Not collective 55062df84da0SMatthew G. Knepley 5507f1a722f8SMatthew G. Knepley Input Parameters: 55082df84da0SMatthew G. Knepley + dm - The DM 55092df84da0SMatthew G. Knepley . Nc - The number of components for the field 55102df84da0SMatthew G. Knepley . prefix - The options prefix for the output PetscFE, or NULL 55112df84da0SMatthew G. Knepley - qorder - The quadrature order or PETSC_DETERMINE to use PetscSpace polynomial degree 55122df84da0SMatthew G. Knepley 55132df84da0SMatthew G. Knepley Output Parameter: 55142df84da0SMatthew G. Knepley . fem - The PetscFE 55152df84da0SMatthew G. Knepley 55162df84da0SMatthew G. Knepley Note: This is a convenience method that just calls PetscFECreateByCell() underneath. 55172df84da0SMatthew G. Knepley 55182df84da0SMatthew G. Knepley Level: intermediate 55192df84da0SMatthew G. Knepley 5520db781477SPatrick Sanan .seealso: `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 55212df84da0SMatthew G. Knepley @*/ 55222df84da0SMatthew G. Knepley PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 55232df84da0SMatthew G. Knepley { 55242df84da0SMatthew G. Knepley DMPolytopeType ct; 55252df84da0SMatthew G. Knepley PetscInt dim, cStart; 55262df84da0SMatthew G. Knepley 55272df84da0SMatthew G. Knepley PetscFunctionBegin; 55282df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55292df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 55302df84da0SMatthew G. Knepley if (prefix) PetscValidCharPointer(prefix, 3); 55312df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 55322df84da0SMatthew G. Knepley PetscValidPointer(fem, 5); 55339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 55349566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 55359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 55369566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 55372df84da0SMatthew G. Knepley PetscFunctionReturn(0); 55382df84da0SMatthew G. Knepley } 55392df84da0SMatthew G. Knepley 55401d3af9e0SMatthew G. Knepley /*@ 5541e5e52638SMatthew G. Knepley DMCreateDS - Create the discrete systems for the DM based upon the fields added to the DM 5542e5e52638SMatthew G. Knepley 5543d083f849SBarry Smith Collective on dm 5544e5e52638SMatthew G. Knepley 5545e5e52638SMatthew G. Knepley Input Parameter: 5546e5e52638SMatthew G. Knepley . dm - The DM 5547e5e52638SMatthew G. Knepley 554845480ffeSMatthew G. Knepley Options Database Keys: 554945480ffeSMatthew G. Knepley . -dm_petscds_view - View all the PetscDS objects in this DM 555045480ffeSMatthew G. Knepley 5551e5e52638SMatthew G. Knepley Note: If the label has a DS defined, it will be replaced. Otherwise, it will be added to the DM. 5552e5e52638SMatthew G. Knepley 5553e5e52638SMatthew G. Knepley Level: intermediate 5554e5e52638SMatthew G. Knepley 5555db781477SPatrick Sanan .seealso: `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5556e5e52638SMatthew G. Knepley @*/ 5557e5e52638SMatthew G. Knepley PetscErrorCode DMCreateDS(DM dm) 5558e5e52638SMatthew G. Knepley { 5559e5e52638SMatthew G. Knepley MPI_Comm comm; 5560083401c6SMatthew G. Knepley PetscDS dsDef; 5561083401c6SMatthew G. Knepley DMLabel *labelSet; 5562f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5563f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5564e5e52638SMatthew G. Knepley 5565e5e52638SMatthew G. Knepley PetscFunctionBegin; 5566e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5567e5e52638SMatthew G. Knepley if (!dm->fields) PetscFunctionReturn(0); 55689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject) dm, &comm)); 55699566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5570083401c6SMatthew G. Knepley /* Determine how many regions we have */ 55719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5572083401c6SMatthew G. Knepley Nl = 0; 5573083401c6SMatthew G. Knepley Ndef = 0; 5574083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5575083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5576083401c6SMatthew G. Knepley PetscInt l; 5577083401c6SMatthew G. Knepley 5578f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5579f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5580f918ec44SMatthew G. Knepley { 5581f918ec44SMatthew G. Knepley PetscClassId id; 5582f918ec44SMatthew G. Knepley 55839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5584f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5585f918ec44SMatthew G. Knepley Ceed ceed; 5586f918ec44SMatthew G. Knepley 55879566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 55889566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE) dm->fields[f].disc, ceed)); 5589f918ec44SMatthew G. Knepley } 5590f918ec44SMatthew G. Knepley } 5591f918ec44SMatthew G. Knepley #endif 5592083401c6SMatthew G. Knepley if (!label) {++Ndef; continue;} 5593083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) if (label == labelSet[l]) break; 5594083401c6SMatthew G. Knepley if (l < Nl) continue; 5595083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5596083401c6SMatthew G. Knepley } 5597083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 55989566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 5599083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5600b3cf3223SMatthew G. Knepley IS fields; 5601b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5602b3cf3223SMatthew G. Knepley 5603b3cf3223SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) if (!dm->fields[f].label) ++nf; 56047a8be351SBarry Smith PetscCheck(nf,comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 56059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 5606b3cf3223SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) if (!dm->fields[f].label) fld[nf++] = f; 56079566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 56089566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject) fields, "dm_fields_")); 56099566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 56109566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 561188f0c812SMatthew G. Knepley 56129566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 56139566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef)); 56149566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 56159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 56162df9ee95SMatthew G. Knepley } 56179566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef)); 56189566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5619083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5620083401c6SMatthew G. Knepley if (Ndef && Nl) { 56210122748bSMatthew G. Knepley DM plex; 5622083401c6SMatthew G. Knepley DMLabel cellLabel; 5623083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5624083401c6SMatthew G. Knepley PetscInt *fields; 5625083401c6SMatthew G. Knepley const PetscInt *cells; 5626083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 56270122748bSMatthew G. Knepley 56289566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 56299566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 56309566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 56319566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 56325fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5633083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5634083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5635083401c6SMatthew G. Knepley IS pointIS; 5636083401c6SMatthew G. Knepley 56379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 56389566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 56399566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 56409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5641083401c6SMatthew G. Knepley } 56429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5643083401c6SMatthew G. Knepley 56449566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 56459566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 56469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 56479566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 56489566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 56499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 56509566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5651083401c6SMatthew G. Knepley 56529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 5653083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) if (!dm->fields[f].label) fields[nf++] = f; 56549566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 56559566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject) fieldIS, "dm_fields_")); 56569566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 56579566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5658083401c6SMatthew G. Knepley 56599566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 56609566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef)); 56619566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 56629566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 56639566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 56649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 56659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5666083401c6SMatthew G. Knepley } 5667083401c6SMatthew G. Knepley /* Create label DSes 5668083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5669083401c6SMatthew G. Knepley */ 5670083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5671083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5672083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5673083401c6SMatthew G. Knepley PetscDS ds; 5674083401c6SMatthew G. Knepley IS fields; 5675083401c6SMatthew G. Knepley PetscInt *fld, nf; 5676083401c6SMatthew G. Knepley 56779566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 5678083401c6SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 56799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 5680083401c6SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 56819566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 56829566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject) fields, "dm_fields_")); 56839566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 56849566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 56859566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, ds)); 56869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 56879566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5688083401c6SMatthew G. Knepley { 5689083401c6SMatthew G. Knepley DMPolytopeType ct; 5690083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 56915fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 56920122748bSMatthew G. Knepley 56939566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5694665f567fSMatthew G. Knepley if (lStart >= 0) { 56959566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 5696412e9a14SMatthew G. Knepley switch (ct) { 5697412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 5698412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 5699412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 5700412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 57015fedec97SMatthew G. Knepley isCohesiveLocal = PETSC_TRUE;break; 5702083401c6SMatthew G. Knepley default: break; 5703412e9a14SMatthew G. Knepley } 5704665f567fSMatthew G. Knepley } 57059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 57065fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 57075fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 57085fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 57099566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 57109566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 57115fedec97SMatthew G. Knepley } 57125fedec97SMatthew G. Knepley ++nf; 57135fedec97SMatthew G. Knepley } 57145fedec97SMatthew G. Knepley } 5715e5e52638SMatthew G. Knepley } 57169566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 5717e5e52638SMatthew G. Knepley } 57189566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 5719e5e52638SMatthew G. Knepley /* Set fields in DSes */ 5720083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5721083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 5722083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 5723083401c6SMatthew G. Knepley const PetscInt *fld; 57245fedec97SMatthew G. Knepley PetscInt nf, dsnf; 57255fedec97SMatthew G. Knepley PetscBool isCohesive; 5726e5e52638SMatthew G. Knepley 57279566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 57289566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 57299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 57309566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 5731083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 5732083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 57335fedec97SMatthew G. Knepley PetscBool isCohesiveField; 5734e5e52638SMatthew G. Knepley PetscClassId id; 5735e5e52638SMatthew G. Knepley 57365fedec97SMatthew G. Knepley /* Handle DS with no fields */ 57379566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 57385fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 57399566063dSJacob Faibussowitsch if (isCohesive && !isCohesiveField) PetscCall(PetscFEGetHeightSubspace((PetscFE) disc, 1, (PetscFE *) &disc)); 57409566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 5741083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 57429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 5743e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 5744e5e52638SMatthew G. Knepley } 57459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 5746e5e52638SMatthew G. Knepley } 5747f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 57489566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject) dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 5749f9244615SMatthew G. Knepley if (flg) { 57503b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 57513b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 57523b4aee56SMatthew G. Knepley PetscInt Nf, f; 57533b4aee56SMatthew G. Knepley 57549566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 57559566063dSJacob Faibussowitsch for (f = 0; f < Nf; ++f) PetscCall(PetscDSSetJetDegree(ds, f, k)); 57563b4aee56SMatthew G. Knepley } 5757f9244615SMatthew G. Knepley } 5758e5e52638SMatthew G. Knepley /* Setup DSes */ 5759e5e52638SMatthew G. Knepley if (doSetup) { 57609566063dSJacob Faibussowitsch for (s = 0; s < dm->Nds; ++s) PetscCall(PetscDSSetUp(dm->probs[s].ds)); 5761e5e52638SMatthew G. Knepley } 5762e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5763e5e52638SMatthew G. Knepley } 5764e5e52638SMatthew G. Knepley 5765e5e52638SMatthew G. Knepley /*@ 57667f96f943SMatthew G. Knepley DMComputeExactSolution - Compute the exact solution for a given DM, using the PetscDS information. 57677f96f943SMatthew G. Knepley 5768f2cacb80SMatthew G. Knepley Collective on DM 5769f2cacb80SMatthew G. Knepley 57707f96f943SMatthew G. Knepley Input Parameters: 57717f96f943SMatthew G. Knepley + dm - The DM 57727f96f943SMatthew G. Knepley - time - The time 57737f96f943SMatthew G. Knepley 57747f96f943SMatthew G. Knepley Output Parameters: 5775f2cacb80SMatthew G. Knepley + u - The vector will be filled with exact solution values, or NULL 5776f2cacb80SMatthew G. Knepley - u_t - The vector will be filled with the time derivative of exact solution values, or NULL 57777f96f943SMatthew G. Knepley 57787f96f943SMatthew G. Knepley Note: The user must call PetscDSSetExactSolution() beforehand 57797f96f943SMatthew G. Knepley 57807f96f943SMatthew G. Knepley Level: developer 57817f96f943SMatthew G. Knepley 5782db781477SPatrick Sanan .seealso: `PetscDSSetExactSolution()` 57837f96f943SMatthew G. Knepley @*/ 5784f2cacb80SMatthew G. Knepley PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 57857f96f943SMatthew G. Knepley { 57867f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 57877f96f943SMatthew G. Knepley void **ectxs; 57887f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 57897f96f943SMatthew G. Knepley 57907f96f943SMatthew G. Knepley PetscFunctionBegin; 5791f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5792f2cacb80SMatthew G. Knepley if (u) PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 5793f2cacb80SMatthew G. Knepley if (u_t) PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 57949566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 57959566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 57969566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57977f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 57987f96f943SMatthew G. Knepley PetscDS ds; 57997f96f943SMatthew G. Knepley DMLabel label; 58007f96f943SMatthew G. Knepley IS fieldIS; 58017f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 58027f96f943SMatthew G. Knepley PetscInt dsNf, f; 58037f96f943SMatthew G. Knepley 58049566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 58059566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 58069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 58079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 58089566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 5809f2cacb80SMatthew G. Knepley if (u) { 58107f96f943SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 58117f96f943SMatthew G. Knepley const PetscInt field = fields[f]; 58129566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exacts[field], &ectxs[field])); 58137f96f943SMatthew G. Knepley } 58149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 58157f96f943SMatthew G. Knepley if (label) { 58169566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u)); 58177f96f943SMatthew G. Knepley } else { 58189566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u)); 58197f96f943SMatthew G. Knepley } 58207f96f943SMatthew G. Knepley } 5821f2cacb80SMatthew G. Knepley if (u_t) { 58229566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 58239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 5824f2cacb80SMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 5825f2cacb80SMatthew G. Knepley const PetscInt field = fields[f]; 58269566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, field, &exacts[field], &ectxs[field])); 5827f2cacb80SMatthew G. Knepley } 58289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 5829f2cacb80SMatthew G. Knepley if (label) { 58309566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabel(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, u_t)); 5831f2cacb80SMatthew G. Knepley } else { 58329566063dSJacob Faibussowitsch PetscCall(DMProjectFunction(dm, time, exacts, ectxs, INSERT_ALL_VALUES, u_t)); 5833f2cacb80SMatthew G. Knepley } 5834f2cacb80SMatthew G. Knepley } 5835f2cacb80SMatthew G. Knepley } 5836f2cacb80SMatthew G. Knepley if (u) { 58379566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) u, "Exact Solution")); 58389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject) u, "exact_")); 5839f2cacb80SMatthew G. Knepley } 5840f2cacb80SMatthew G. Knepley if (u_t) { 58419566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) u, "Exact Solution Time Derivative")); 58429566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject) u_t, "exact_t_")); 5843f2cacb80SMatthew G. Knepley } 58449566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 58457f96f943SMatthew G. Knepley PetscFunctionReturn(0); 58467f96f943SMatthew G. Knepley } 58477f96f943SMatthew G. Knepley 584845480ffeSMatthew G. Knepley PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds) 584945480ffeSMatthew G. Knepley { 585045480ffeSMatthew G. Knepley PetscDS dsNew; 585145480ffeSMatthew G. Knepley DSBoundary b; 58526a02485aSMatthew G. Knepley PetscInt cdim, Nf, f, d; 58535fedec97SMatthew G. Knepley PetscBool isCohesive; 585445480ffeSMatthew G. Knepley void *ctx; 585545480ffeSMatthew G. Knepley 585645480ffeSMatthew G. Knepley PetscFunctionBegin; 58579566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject) ds), &dsNew)); 58589566063dSJacob Faibussowitsch PetscCall(PetscDSCopyConstants(ds, dsNew)); 58599566063dSJacob Faibussowitsch PetscCall(PetscDSCopyExactSolutions(ds, dsNew)); 58609566063dSJacob Faibussowitsch PetscCall(PetscDSSelectDiscretizations(ds, PETSC_DETERMINE, NULL, dsNew)); 58619566063dSJacob Faibussowitsch PetscCall(PetscDSCopyEquations(ds, dsNew)); 58629566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 586345480ffeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 58649566063dSJacob Faibussowitsch PetscCall(PetscDSGetContext(ds, f, &ctx)); 58659566063dSJacob Faibussowitsch PetscCall(PetscDSSetContext(dsNew, f, ctx)); 58669566063dSJacob Faibussowitsch PetscCall(PetscDSGetCohesive(ds, f, &isCohesive)); 58679566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(dsNew, f, isCohesive)); 58686a02485aSMatthew G. Knepley PetscCall(PetscDSGetJetDegree(ds, f, &d)); 58696a02485aSMatthew G. Knepley PetscCall(PetscDSSetJetDegree(dsNew, f, d)); 587045480ffeSMatthew G. Knepley } 587145480ffeSMatthew G. Knepley if (Nf) { 58729566063dSJacob Faibussowitsch PetscCall(PetscDSGetCoordinateDimension(ds, &cdim)); 58739566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsNew, cdim)); 587445480ffeSMatthew G. Knepley } 58759566063dSJacob Faibussowitsch PetscCall(PetscDSCopyBoundary(ds, PETSC_DETERMINE, NULL, dsNew)); 587645480ffeSMatthew G. Knepley for (b = dsNew->boundary; b; b = b->next) { 58779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, b->lname, &b->label)); 587845480ffeSMatthew G. Knepley /* Do not check if label exists here, since p4est calls this for the reference tree which does not have the labels */ 58797a8be351SBarry Smith //PetscCheck(b->label,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Label %s missing in new DM", name); 588045480ffeSMatthew G. Knepley } 588145480ffeSMatthew G. Knepley 58829566063dSJacob Faibussowitsch PetscCall(DMSetRegionDS(dm, label, fields, dsNew)); 58839566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 588445480ffeSMatthew G. Knepley PetscFunctionReturn(0); 588545480ffeSMatthew G. Knepley } 588645480ffeSMatthew G. Knepley 58877f96f943SMatthew G. Knepley /*@ 5888e5e52638SMatthew G. Knepley DMCopyDS - Copy the discrete systems for the DM into another DM 5889e5e52638SMatthew G. Knepley 5890d083f849SBarry Smith Collective on dm 5891e5e52638SMatthew G. Knepley 5892e5e52638SMatthew G. Knepley Input Parameter: 5893e5e52638SMatthew G. Knepley . dm - The DM 5894e5e52638SMatthew G. Knepley 5895e5e52638SMatthew G. Knepley Output Parameter: 5896e5e52638SMatthew G. Knepley . newdm - The DM 5897e5e52638SMatthew G. Knepley 5898e5e52638SMatthew G. Knepley Level: advanced 5899e5e52638SMatthew G. Knepley 5900db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5901e5e52638SMatthew G. Knepley @*/ 5902e5e52638SMatthew G. Knepley PetscErrorCode DMCopyDS(DM dm, DM newdm) 5903e5e52638SMatthew G. Knepley { 5904e5e52638SMatthew G. Knepley PetscInt Nds, s; 5905e5e52638SMatthew G. Knepley 5906e5e52638SMatthew G. Knepley PetscFunctionBegin; 5907e5e52638SMatthew G. Knepley if (dm == newdm) PetscFunctionReturn(0); 59089566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 59099566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 5910e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5911e5e52638SMatthew G. Knepley DMLabel label; 5912b3cf3223SMatthew G. Knepley IS fields; 591345480ffeSMatthew G. Knepley PetscDS ds, newds; 5914783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 5915e5e52638SMatthew G. Knepley 59169566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds)); 5917b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 59189566063dSJacob Faibussowitsch PetscCall(DMTransferDS_Internal(newdm, label, fields, ds)); 591945480ffeSMatthew G. Knepley /* Commplete new labels in the new DS */ 59209566063dSJacob Faibussowitsch PetscCall(DMGetRegionDS(newdm, label, NULL, &newds)); 59219566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 5922783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 5923b8025e53SMatthew G. Knepley PetscWeakForm wf; 592445480ffeSMatthew G. Knepley DMLabel label; 5925783e2ec8SMatthew G. Knepley PetscInt field; 5926783e2ec8SMatthew G. Knepley 59279566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 59289566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 5929783e2ec8SMatthew G. Knepley } 5930e5e52638SMatthew G. Knepley } 5931799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 5932e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5933e5e52638SMatthew G. Knepley } 5934e5e52638SMatthew G. Knepley 5935e5e52638SMatthew G. Knepley /*@ 5936e5e52638SMatthew G. Knepley DMCopyDisc - Copy the fields and discrete systems for the DM into another DM 5937e5e52638SMatthew G. Knepley 5938d083f849SBarry Smith Collective on dm 5939e5e52638SMatthew G. Knepley 5940e5e52638SMatthew G. Knepley Input Parameter: 5941e5e52638SMatthew G. Knepley . dm - The DM 5942e5e52638SMatthew G. Knepley 5943e5e52638SMatthew G. Knepley Output Parameter: 5944e5e52638SMatthew G. Knepley . newdm - The DM 5945e5e52638SMatthew G. Knepley 5946e5e52638SMatthew G. Knepley Level: advanced 5947e5e52638SMatthew G. Knepley 5948db781477SPatrick Sanan .seealso: `DMCopyFields()`, `DMCopyDS()` 5949e5e52638SMatthew G. Knepley @*/ 5950e5e52638SMatthew G. Knepley PetscErrorCode DMCopyDisc(DM dm, DM newdm) 5951e5e52638SMatthew G. Knepley { 5952e5e52638SMatthew G. Knepley PetscFunctionBegin; 59539566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 59549566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 5955e5e52638SMatthew G. Knepley PetscFunctionReturn(0); 5956e5e52638SMatthew G. Knepley } 5957e5e52638SMatthew G. Knepley 5958c73cfb54SMatthew G. Knepley /*@ 5959c73cfb54SMatthew G. Knepley DMGetDimension - Return the topological dimension of the DM 5960c73cfb54SMatthew G. Knepley 5961c73cfb54SMatthew G. Knepley Not collective 5962c73cfb54SMatthew G. Knepley 5963c73cfb54SMatthew G. Knepley Input Parameter: 5964c73cfb54SMatthew G. Knepley . dm - The DM 5965c73cfb54SMatthew G. Knepley 5966c73cfb54SMatthew G. Knepley Output Parameter: 5967c73cfb54SMatthew G. Knepley . dim - The topological dimension 5968c73cfb54SMatthew G. Knepley 5969c73cfb54SMatthew G. Knepley Level: beginner 5970c73cfb54SMatthew G. Knepley 5971db781477SPatrick Sanan .seealso: `DMSetDimension()`, `DMCreate()` 5972c73cfb54SMatthew G. Knepley @*/ 5973c73cfb54SMatthew G. Knepley PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 5974c73cfb54SMatthew G. Knepley { 5975c73cfb54SMatthew G. Knepley PetscFunctionBegin; 5976c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5977534a8f05SLisandro Dalcin PetscValidIntPointer(dim, 2); 5978c73cfb54SMatthew G. Knepley *dim = dm->dim; 5979c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 5980c73cfb54SMatthew G. Knepley } 5981c73cfb54SMatthew G. Knepley 5982c73cfb54SMatthew G. Knepley /*@ 5983c73cfb54SMatthew G. Knepley DMSetDimension - Set the topological dimension of the DM 5984c73cfb54SMatthew G. Knepley 5985c73cfb54SMatthew G. Knepley Collective on dm 5986c73cfb54SMatthew G. Knepley 5987c73cfb54SMatthew G. Knepley Input Parameters: 5988c73cfb54SMatthew G. Knepley + dm - The DM 5989c73cfb54SMatthew G. Knepley - dim - The topological dimension 5990c73cfb54SMatthew G. Knepley 5991c73cfb54SMatthew G. Knepley Level: beginner 5992c73cfb54SMatthew G. Knepley 5993db781477SPatrick Sanan .seealso: `DMGetDimension()`, `DMCreate()` 5994c73cfb54SMatthew G. Knepley @*/ 5995c73cfb54SMatthew G. Knepley PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 5996c73cfb54SMatthew G. Knepley { 5997e5e52638SMatthew G. Knepley PetscDS ds; 599845480ffeSMatthew G. Knepley PetscInt Nds, n; 5999f17e8794SMatthew G. Knepley 6000c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6001c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6002c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6003c73cfb54SMatthew G. Knepley dm->dim = dim; 6004d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 60059566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 600645480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 60079566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds)); 60089566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 600945480ffeSMatthew G. Knepley } 6010d17bd122SMatthew G. Knepley } 6011c73cfb54SMatthew G. Knepley PetscFunctionReturn(0); 6012c73cfb54SMatthew G. Knepley } 6013c73cfb54SMatthew G. Knepley 6014793f3fe5SMatthew G. Knepley /*@ 6015793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6016793f3fe5SMatthew G. Knepley 6017d083f849SBarry Smith Collective on dm 6018793f3fe5SMatthew G. Knepley 6019793f3fe5SMatthew G. Knepley Input Parameters: 6020793f3fe5SMatthew G. Knepley + dm - the DM 6021793f3fe5SMatthew G. Knepley - dim - the dimension 6022793f3fe5SMatthew G. Knepley 6023793f3fe5SMatthew G. Knepley Output Parameters: 6024793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6025aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6026793f3fe5SMatthew G. Knepley 6027793f3fe5SMatthew G. Knepley Note: 6028793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6029a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6030793f3fe5SMatthew G. Knepley then the interval is empty. 6031793f3fe5SMatthew G. Knepley 6032793f3fe5SMatthew G. Knepley Level: intermediate 6033793f3fe5SMatthew G. Knepley 6034db781477SPatrick Sanan .seealso: `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6035793f3fe5SMatthew G. Knepley @*/ 6036793f3fe5SMatthew G. Knepley PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6037793f3fe5SMatthew G. Knepley { 6038793f3fe5SMatthew G. Knepley PetscInt d; 6039793f3fe5SMatthew G. Knepley 6040793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6041793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 60429566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 60437a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d),PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 60447a8be351SBarry Smith PetscCheck(dm->ops->getdimpoints,PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "DM type %s does not implement DMGetDimPoints",((PetscObject)dm)->type_name); 60459566063dSJacob Faibussowitsch PetscCall((*dm->ops->getdimpoints)(dm, dim, pStart, pEnd)); 6046793f3fe5SMatthew G. Knepley PetscFunctionReturn(0); 6047793f3fe5SMatthew G. Knepley } 6048793f3fe5SMatthew G. Knepley 60496636e97aSMatthew G Knepley /*@ 6050f4d763aaSMatthew G. Knepley DMGetOutputDM - Retrieve the DM associated with the layout for output 6051f4d763aaSMatthew G. Knepley 60528f700142SStefano Zampini Collective on dm 60538f700142SStefano Zampini 6054f4d763aaSMatthew G. Knepley Input Parameter: 6055f4d763aaSMatthew G. Knepley . dm - The original DM 6056f4d763aaSMatthew G. Knepley 6057f4d763aaSMatthew G. Knepley Output Parameter: 6058f4d763aaSMatthew G. Knepley . odm - The DM which provides the layout for output 6059f4d763aaSMatthew G. Knepley 6060f4d763aaSMatthew G. Knepley Level: intermediate 6061f4d763aaSMatthew G. Knepley 6062db781477SPatrick Sanan .seealso: `VecView()`, `DMGetGlobalSection()` 6063f4d763aaSMatthew G. Knepley @*/ 606414f150ffSMatthew G. Knepley PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 606514f150ffSMatthew G. Knepley { 6066c26acbdeSMatthew G. Knepley PetscSection section; 60672d4e4a49SMatthew G. Knepley PetscBool hasConstraints, ghasConstraints; 606814f150ffSMatthew G. Knepley 606914f150ffSMatthew G. Knepley PetscFunctionBegin; 607014f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 607114f150ffSMatthew G. Knepley PetscValidPointer(odm,2); 60729566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 60739566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 60749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&hasConstraints, &ghasConstraints, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject) dm))); 60752d4e4a49SMatthew G. Knepley if (!ghasConstraints) { 6076c26acbdeSMatthew G. Knepley *odm = dm; 6077c26acbdeSMatthew G. Knepley PetscFunctionReturn(0); 6078c26acbdeSMatthew G. Knepley } 607914f150ffSMatthew G. Knepley if (!dm->dmBC) { 6080c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 608114f150ffSMatthew G. Knepley PetscSF sf; 608214f150ffSMatthew G. Knepley 60839566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 60849566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 60859566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 60869566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 60879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 60889566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 60899566063dSJacob Faibussowitsch PetscCall(PetscSectionCreateGlobalSection(section, sf, PETSC_TRUE, PETSC_FALSE, &gsection)); 60909566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 60919566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 609214f150ffSMatthew G. Knepley } 609314f150ffSMatthew G. Knepley *odm = dm->dmBC; 609414f150ffSMatthew G. Knepley PetscFunctionReturn(0); 609514f150ffSMatthew G. Knepley } 6096f4d763aaSMatthew G. Knepley 6097f4d763aaSMatthew G. Knepley /*@ 6098cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6099f4d763aaSMatthew G. Knepley 6100f4d763aaSMatthew G. Knepley Input Parameter: 6101f4d763aaSMatthew G. Knepley . dm - The original DM 6102f4d763aaSMatthew G. Knepley 6103cdb7a50dSMatthew G. Knepley Output Parameters: 6104cdb7a50dSMatthew G. Knepley + num - The output sequence number 6105cdb7a50dSMatthew G. Knepley - val - The output sequence value 6106f4d763aaSMatthew G. Knepley 6107f4d763aaSMatthew G. Knepley Level: intermediate 6108f4d763aaSMatthew G. Knepley 6109f4d763aaSMatthew G. Knepley Note: This is intended for output that should appear in sequence, for instance 6110f4d763aaSMatthew G. Knepley a set of timesteps in an HDF5 file, or a set of realizations of a stochastic system. 6111f4d763aaSMatthew G. Knepley 6112db781477SPatrick Sanan .seealso: `VecView()` 6113f4d763aaSMatthew G. Knepley @*/ 6114cdb7a50dSMatthew G. Knepley PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6115f4d763aaSMatthew G. Knepley { 6116f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6117f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 6118534a8f05SLisandro Dalcin if (num) {PetscValidIntPointer(num,2); *num = dm->outputSequenceNum;} 6119534a8f05SLisandro Dalcin if (val) {PetscValidRealPointer(val,3);*val = dm->outputSequenceVal;} 6120f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6121f4d763aaSMatthew G. Knepley } 6122f4d763aaSMatthew G. Knepley 6123f4d763aaSMatthew G. Knepley /*@ 6124cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6125f4d763aaSMatthew G. Knepley 6126f4d763aaSMatthew G. Knepley Input Parameters: 6127f4d763aaSMatthew G. Knepley + dm - The original DM 6128cdb7a50dSMatthew G. Knepley . num - The output sequence number 6129cdb7a50dSMatthew G. Knepley - val - The output sequence value 6130f4d763aaSMatthew G. Knepley 6131f4d763aaSMatthew G. Knepley Level: intermediate 6132f4d763aaSMatthew G. Knepley 6133f4d763aaSMatthew G. Knepley Note: This is intended for output that should appear in sequence, for instance 6134f4d763aaSMatthew G. Knepley a set of timesteps in an HDF5 file, or a set of realizations of a stochastic system. 6135f4d763aaSMatthew G. Knepley 6136db781477SPatrick Sanan .seealso: `VecView()` 6137f4d763aaSMatthew G. Knepley @*/ 6138cdb7a50dSMatthew G. Knepley PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6139f4d763aaSMatthew G. Knepley { 6140f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6141f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 6142f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6143cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 6144cdb7a50dSMatthew G. Knepley PetscFunctionReturn(0); 6145cdb7a50dSMatthew G. Knepley } 6146cdb7a50dSMatthew G. Knepley 6147cdb7a50dSMatthew G. Knepley /*@C 6148cdb7a50dSMatthew G. Knepley DMOutputSequenceLoad - Retrieve the sequence value from a Viewer 6149cdb7a50dSMatthew G. Knepley 6150cdb7a50dSMatthew G. Knepley Input Parameters: 6151cdb7a50dSMatthew G. Knepley + dm - The original DM 6152cdb7a50dSMatthew G. Knepley . name - The sequence name 6153cdb7a50dSMatthew G. Knepley - num - The output sequence number 6154cdb7a50dSMatthew G. Knepley 6155cdb7a50dSMatthew G. Knepley Output Parameter: 6156cdb7a50dSMatthew G. Knepley . val - The output sequence value 6157cdb7a50dSMatthew G. Knepley 6158cdb7a50dSMatthew G. Knepley Level: intermediate 6159cdb7a50dSMatthew G. Knepley 6160cdb7a50dSMatthew G. Knepley Note: This is intended for output that should appear in sequence, for instance 6161cdb7a50dSMatthew G. Knepley a set of timesteps in an HDF5 file, or a set of realizations of a stochastic system. 6162cdb7a50dSMatthew G. Knepley 6163db781477SPatrick Sanan .seealso: `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6164cdb7a50dSMatthew G. Knepley @*/ 6165cdb7a50dSMatthew G. Knepley PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6166cdb7a50dSMatthew G. Knepley { 6167cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6168cdb7a50dSMatthew G. Knepley 6169cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6170cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 6171cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 6172064a246eSJacob Faibussowitsch PetscValidRealPointer(val,5); 61739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERHDF5, &ishdf5)); 6174cdb7a50dSMatthew G. Knepley if (ishdf5) { 6175cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6176cdb7a50dSMatthew G. Knepley PetscScalar value; 6177cdb7a50dSMatthew G. Knepley 61789566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 61794aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6180cdb7a50dSMatthew G. Knepley #endif 6181cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 6182f4d763aaSMatthew G. Knepley PetscFunctionReturn(0); 6183f4d763aaSMatthew G. Knepley } 61848e4ac7eaSMatthew G. Knepley 61858e4ac7eaSMatthew G. Knepley /*@ 61868e4ac7eaSMatthew G. Knepley DMGetUseNatural - Get the flag for creating a mapping to the natural order on distribution 61878e4ac7eaSMatthew G. Knepley 61888e4ac7eaSMatthew G. Knepley Not collective 61898e4ac7eaSMatthew G. Knepley 61908e4ac7eaSMatthew G. Knepley Input Parameter: 61918e4ac7eaSMatthew G. Knepley . dm - The DM 61928e4ac7eaSMatthew G. Knepley 61938e4ac7eaSMatthew G. Knepley Output Parameter: 61948e4ac7eaSMatthew G. Knepley . useNatural - The flag to build the mapping to a natural order during distribution 61958e4ac7eaSMatthew G. Knepley 61968e4ac7eaSMatthew G. Knepley Level: beginner 61978e4ac7eaSMatthew G. Knepley 6198db781477SPatrick Sanan .seealso: `DMSetUseNatural()`, `DMCreate()` 61998e4ac7eaSMatthew G. Knepley @*/ 62008e4ac7eaSMatthew G. Knepley PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 62018e4ac7eaSMatthew G. Knepley { 62028e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 62038e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6204534a8f05SLisandro Dalcin PetscValidBoolPointer(useNatural, 2); 62058e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 62068e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 62078e4ac7eaSMatthew G. Knepley } 62088e4ac7eaSMatthew G. Knepley 62098e4ac7eaSMatthew G. Knepley /*@ 62105d3b26e6SMatthew G. Knepley DMSetUseNatural - Set the flag for creating a mapping to the natural order after distribution 62118e4ac7eaSMatthew G. Knepley 62128e4ac7eaSMatthew G. Knepley Collective on dm 62138e4ac7eaSMatthew G. Knepley 62148e4ac7eaSMatthew G. Knepley Input Parameters: 62158e4ac7eaSMatthew G. Knepley + dm - The DM 62168e4ac7eaSMatthew G. Knepley - useNatural - The flag to build the mapping to a natural order during distribution 62178e4ac7eaSMatthew G. Knepley 62185d3b26e6SMatthew G. Knepley Note: This also causes the map to be build after DMCreateSubDM() and DMCreateSuperDM() 62195d3b26e6SMatthew G. Knepley 62208e4ac7eaSMatthew G. Knepley Level: beginner 62218e4ac7eaSMatthew G. Knepley 6222db781477SPatrick Sanan .seealso: `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 62238e4ac7eaSMatthew G. Knepley @*/ 62248e4ac7eaSMatthew G. Knepley PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 62258e4ac7eaSMatthew G. Knepley { 62268e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 62278e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 62288833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 62298e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 62308e4ac7eaSMatthew G. Knepley PetscFunctionReturn(0); 62318e4ac7eaSMatthew G. Knepley } 6232c58f1c22SToby Isaac 6233c58f1c22SToby Isaac /*@C 6234c58f1c22SToby Isaac DMCreateLabel - Create a label of the given name if it does not already exist 6235c58f1c22SToby Isaac 6236c58f1c22SToby Isaac Not Collective 6237c58f1c22SToby Isaac 6238c58f1c22SToby Isaac Input Parameters: 6239c58f1c22SToby Isaac + dm - The DM object 6240c58f1c22SToby Isaac - name - The label name 6241c58f1c22SToby Isaac 6242c58f1c22SToby Isaac Level: intermediate 6243c58f1c22SToby Isaac 6244db781477SPatrick Sanan .seealso: `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6245c58f1c22SToby Isaac @*/ 6246c58f1c22SToby Isaac PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6247c58f1c22SToby Isaac { 62485d80c0bfSVaclav Hapla PetscBool flg; 62495d80c0bfSVaclav Hapla DMLabel label; 6250c58f1c22SToby Isaac 6251c58f1c22SToby Isaac PetscFunctionBegin; 6252c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6253c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 62549566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6255c58f1c22SToby Isaac if (!flg) { 62569566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 62579566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 62589566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6259c58f1c22SToby Isaac } 6260c58f1c22SToby Isaac PetscFunctionReturn(0); 6261c58f1c22SToby Isaac } 6262c58f1c22SToby Isaac 6263c58f1c22SToby Isaac /*@C 62647cf350d0SPierre Jolivet DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists, move it to this index. 62650fdc7489SMatthew Knepley 62660fdc7489SMatthew Knepley Not Collective 62670fdc7489SMatthew Knepley 62680fdc7489SMatthew Knepley Input Parameters: 62690fdc7489SMatthew Knepley + dm - The DM object 62700fdc7489SMatthew Knepley . l - The index for the label 62710fdc7489SMatthew Knepley - name - The label name 62720fdc7489SMatthew Knepley 62730fdc7489SMatthew Knepley Level: intermediate 62740fdc7489SMatthew Knepley 6275db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 62760fdc7489SMatthew Knepley @*/ 62770fdc7489SMatthew Knepley PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 62780fdc7489SMatthew Knepley { 62790fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 62800fdc7489SMatthew Knepley DMLabel label; 62810fdc7489SMatthew Knepley PetscInt Nl, m; 62820fdc7489SMatthew Knepley PetscBool flg, match; 62830fdc7489SMatthew Knepley const char *lname; 62840fdc7489SMatthew Knepley 62850fdc7489SMatthew Knepley PetscFunctionBegin; 62860fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6287064a246eSJacob Faibussowitsch PetscValidCharPointer(name, 3); 62889566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 62890fdc7489SMatthew Knepley if (!flg) { 62909566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 62919566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 62929566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 62930fdc7489SMatthew Knepley } 62949566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 629563a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 62960fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 62979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) orig->label, &lname)); 62989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 62990fdc7489SMatthew Knepley if (match) break; 63000fdc7489SMatthew Knepley } 63010fdc7489SMatthew Knepley if (m == l) PetscFunctionReturn(0); 63020fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 63030fdc7489SMatthew Knepley else prev->next = orig->next; 63040fdc7489SMatthew Knepley if (!l) { 63050fdc7489SMatthew Knepley orig->next = dm->labels; 63060fdc7489SMatthew Knepley dm->labels = orig; 63070fdc7489SMatthew Knepley } else { 63080fdc7489SMatthew Knepley for (m = 0, prev = dm->labels; m < l-1; ++m, prev = prev->next); 63090fdc7489SMatthew Knepley orig->next = prev->next; 63100fdc7489SMatthew Knepley prev->next = orig; 63110fdc7489SMatthew Knepley } 63120fdc7489SMatthew Knepley PetscFunctionReturn(0); 63130fdc7489SMatthew Knepley } 63140fdc7489SMatthew Knepley 63150fdc7489SMatthew Knepley /*@C 63167cf350d0SPierre Jolivet DMGetLabelValue - Get the value in a DMLabel for the given point, with -1 as the default 6317c58f1c22SToby Isaac 6318c58f1c22SToby Isaac Not Collective 6319c58f1c22SToby Isaac 6320c58f1c22SToby Isaac Input Parameters: 6321c58f1c22SToby Isaac + dm - The DM object 6322c58f1c22SToby Isaac . name - The label name 6323c58f1c22SToby Isaac - point - The mesh point 6324c58f1c22SToby Isaac 6325c58f1c22SToby Isaac Output Parameter: 6326c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6327c58f1c22SToby Isaac 6328c58f1c22SToby Isaac Level: beginner 6329c58f1c22SToby Isaac 6330db781477SPatrick Sanan .seealso: `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6331c58f1c22SToby Isaac @*/ 6332c58f1c22SToby Isaac PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6333c58f1c22SToby Isaac { 6334c58f1c22SToby Isaac DMLabel label; 6335c58f1c22SToby Isaac 6336c58f1c22SToby Isaac PetscFunctionBegin; 6337c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6338c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 63399566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 63407a8be351SBarry Smith PetscCheck(label,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 63419566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 6342c58f1c22SToby Isaac PetscFunctionReturn(0); 6343c58f1c22SToby Isaac } 6344c58f1c22SToby Isaac 6345c58f1c22SToby Isaac /*@C 63467cf350d0SPierre Jolivet DMSetLabelValue - Add a point to a DMLabel with given value 6347c58f1c22SToby Isaac 6348c58f1c22SToby Isaac Not Collective 6349c58f1c22SToby Isaac 6350c58f1c22SToby Isaac Input Parameters: 6351c58f1c22SToby Isaac + dm - The DM object 6352c58f1c22SToby Isaac . name - The label name 6353c58f1c22SToby Isaac . point - The mesh point 6354c58f1c22SToby Isaac - value - The label value for this point 6355c58f1c22SToby Isaac 6356c58f1c22SToby Isaac Output Parameter: 6357c58f1c22SToby Isaac 6358c58f1c22SToby Isaac Level: beginner 6359c58f1c22SToby Isaac 6360db781477SPatrick Sanan .seealso: `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6361c58f1c22SToby Isaac @*/ 6362c58f1c22SToby Isaac PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6363c58f1c22SToby Isaac { 6364c58f1c22SToby Isaac DMLabel label; 6365c58f1c22SToby Isaac 6366c58f1c22SToby Isaac PetscFunctionBegin; 6367c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6368c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 63699566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6370c58f1c22SToby Isaac if (!label) { 63719566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 63729566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6373c58f1c22SToby Isaac } 63749566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 6375c58f1c22SToby Isaac PetscFunctionReturn(0); 6376c58f1c22SToby Isaac } 6377c58f1c22SToby Isaac 6378c58f1c22SToby Isaac /*@C 63797cf350d0SPierre Jolivet DMClearLabelValue - Remove a point from a DMLabel with given value 6380c58f1c22SToby Isaac 6381c58f1c22SToby Isaac Not Collective 6382c58f1c22SToby Isaac 6383c58f1c22SToby Isaac Input Parameters: 6384c58f1c22SToby Isaac + dm - The DM object 6385c58f1c22SToby Isaac . name - The label name 6386c58f1c22SToby Isaac . point - The mesh point 6387c58f1c22SToby Isaac - value - The label value for this point 6388c58f1c22SToby Isaac 6389c58f1c22SToby Isaac Output Parameter: 6390c58f1c22SToby Isaac 6391c58f1c22SToby Isaac Level: beginner 6392c58f1c22SToby Isaac 6393db781477SPatrick Sanan .seealso: `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6394c58f1c22SToby Isaac @*/ 6395c58f1c22SToby Isaac PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6396c58f1c22SToby Isaac { 6397c58f1c22SToby Isaac DMLabel label; 6398c58f1c22SToby Isaac 6399c58f1c22SToby Isaac PetscFunctionBegin; 6400c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6401c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 64029566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6403c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 64049566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 6405c58f1c22SToby Isaac PetscFunctionReturn(0); 6406c58f1c22SToby Isaac } 6407c58f1c22SToby Isaac 6408c58f1c22SToby Isaac /*@C 6409c58f1c22SToby Isaac DMGetLabelSize - Get the number of different integer ids in a Label 6410c58f1c22SToby Isaac 6411c58f1c22SToby Isaac Not Collective 6412c58f1c22SToby Isaac 6413c58f1c22SToby Isaac Input Parameters: 6414c58f1c22SToby Isaac + dm - The DM object 6415c58f1c22SToby Isaac - name - The label name 6416c58f1c22SToby Isaac 6417c58f1c22SToby Isaac Output Parameter: 6418c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6419c58f1c22SToby Isaac 6420c58f1c22SToby Isaac Level: beginner 6421c58f1c22SToby Isaac 6422db781477SPatrick Sanan .seealso: `DMLabelGetNumValues()`, `DMSetLabelValue()` 6423c58f1c22SToby Isaac @*/ 6424c58f1c22SToby Isaac PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6425c58f1c22SToby Isaac { 6426c58f1c22SToby Isaac DMLabel label; 6427c58f1c22SToby Isaac 6428c58f1c22SToby Isaac PetscFunctionBegin; 6429c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6430c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6431534a8f05SLisandro Dalcin PetscValidIntPointer(size, 3); 64329566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6433c58f1c22SToby Isaac *size = 0; 6434c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 64359566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 6436c58f1c22SToby Isaac PetscFunctionReturn(0); 6437c58f1c22SToby Isaac } 6438c58f1c22SToby Isaac 6439c58f1c22SToby Isaac /*@C 6440c58f1c22SToby Isaac DMGetLabelIdIS - Get the integer ids in a label 6441c58f1c22SToby Isaac 6442c58f1c22SToby Isaac Not Collective 6443c58f1c22SToby Isaac 6444c58f1c22SToby Isaac Input Parameters: 6445c58f1c22SToby Isaac + mesh - The DM object 6446c58f1c22SToby Isaac - name - The label name 6447c58f1c22SToby Isaac 6448c58f1c22SToby Isaac Output Parameter: 6449c58f1c22SToby Isaac . ids - The integer ids, or NULL if the label does not exist 6450c58f1c22SToby Isaac 6451c58f1c22SToby Isaac Level: beginner 6452c58f1c22SToby Isaac 6453db781477SPatrick Sanan .seealso: `DMLabelGetValueIS()`, `DMGetLabelSize()` 6454c58f1c22SToby Isaac @*/ 6455c58f1c22SToby Isaac PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6456c58f1c22SToby Isaac { 6457c58f1c22SToby Isaac DMLabel label; 6458c58f1c22SToby Isaac 6459c58f1c22SToby Isaac PetscFunctionBegin; 6460c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6461c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6462c58f1c22SToby Isaac PetscValidPointer(ids, 3); 64639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6464c58f1c22SToby Isaac *ids = NULL; 6465dab2e251SBlaise Bourdin if (label) { 64669566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6467dab2e251SBlaise Bourdin } else { 6468dab2e251SBlaise Bourdin /* returning an empty IS */ 64699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF,0,NULL,PETSC_USE_POINTER,ids)); 6470dab2e251SBlaise Bourdin } 6471c58f1c22SToby Isaac PetscFunctionReturn(0); 6472c58f1c22SToby Isaac } 6473c58f1c22SToby Isaac 6474c58f1c22SToby Isaac /*@C 6475c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6476c58f1c22SToby Isaac 6477c58f1c22SToby Isaac Not Collective 6478c58f1c22SToby Isaac 6479c58f1c22SToby Isaac Input Parameters: 6480c58f1c22SToby Isaac + dm - The DM object 6481c58f1c22SToby Isaac . name - The label name 6482c58f1c22SToby Isaac - value - The stratum value 6483c58f1c22SToby Isaac 6484c58f1c22SToby Isaac Output Parameter: 6485c58f1c22SToby Isaac . size - The stratum size 6486c58f1c22SToby Isaac 6487c58f1c22SToby Isaac Level: beginner 6488c58f1c22SToby Isaac 6489db781477SPatrick Sanan .seealso: `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6490c58f1c22SToby Isaac @*/ 6491c58f1c22SToby Isaac PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6492c58f1c22SToby Isaac { 6493c58f1c22SToby Isaac DMLabel label; 6494c58f1c22SToby Isaac 6495c58f1c22SToby Isaac PetscFunctionBegin; 6496c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6497c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6498534a8f05SLisandro Dalcin PetscValidIntPointer(size, 4); 64999566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6500c58f1c22SToby Isaac *size = 0; 6501c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 65029566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 6503c58f1c22SToby Isaac PetscFunctionReturn(0); 6504c58f1c22SToby Isaac } 6505c58f1c22SToby Isaac 6506c58f1c22SToby Isaac /*@C 6507c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6508c58f1c22SToby Isaac 6509c58f1c22SToby Isaac Not Collective 6510c58f1c22SToby Isaac 6511c58f1c22SToby Isaac Input Parameters: 6512c58f1c22SToby Isaac + dm - The DM object 6513c58f1c22SToby Isaac . name - The label name 6514c58f1c22SToby Isaac - value - The stratum value 6515c58f1c22SToby Isaac 6516c58f1c22SToby Isaac Output Parameter: 6517c58f1c22SToby Isaac . points - The stratum points, or NULL if the label does not exist or does not have that value 6518c58f1c22SToby Isaac 6519c58f1c22SToby Isaac Level: beginner 6520c58f1c22SToby Isaac 6521db781477SPatrick Sanan .seealso: `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6522c58f1c22SToby Isaac @*/ 6523c58f1c22SToby Isaac PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6524c58f1c22SToby Isaac { 6525c58f1c22SToby Isaac DMLabel label; 6526c58f1c22SToby Isaac 6527c58f1c22SToby Isaac PetscFunctionBegin; 6528c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6529c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6530c58f1c22SToby Isaac PetscValidPointer(points, 4); 65319566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6532c58f1c22SToby Isaac *points = NULL; 6533c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 65349566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 6535c58f1c22SToby Isaac PetscFunctionReturn(0); 6536c58f1c22SToby Isaac } 6537c58f1c22SToby Isaac 65384de306b1SToby Isaac /*@C 65399044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 65404de306b1SToby Isaac 65414de306b1SToby Isaac Not Collective 65424de306b1SToby Isaac 65434de306b1SToby Isaac Input Parameters: 65444de306b1SToby Isaac + dm - The DM object 65454de306b1SToby Isaac . name - The label name 65464de306b1SToby Isaac . value - The stratum value 65474de306b1SToby Isaac - points - The stratum points 65484de306b1SToby Isaac 65494de306b1SToby Isaac Level: beginner 65504de306b1SToby Isaac 6551db781477SPatrick Sanan .seealso: `DMLabelSetStratumIS()`, `DMGetStratumSize()` 65524de306b1SToby Isaac @*/ 65534de306b1SToby Isaac PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 65544de306b1SToby Isaac { 65554de306b1SToby Isaac DMLabel label; 65564de306b1SToby Isaac 65574de306b1SToby Isaac PetscFunctionBegin; 65584de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65594de306b1SToby Isaac PetscValidCharPointer(name, 2); 65604de306b1SToby Isaac PetscValidPointer(points, 4); 65619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 65624de306b1SToby Isaac if (!label) PetscFunctionReturn(0); 65639566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 65644de306b1SToby Isaac PetscFunctionReturn(0); 65654de306b1SToby Isaac } 65664de306b1SToby Isaac 6567c58f1c22SToby Isaac /*@C 65687cf350d0SPierre Jolivet DMClearLabelStratum - Remove all points from a stratum from a DMLabel 6569c58f1c22SToby Isaac 6570c58f1c22SToby Isaac Not Collective 6571c58f1c22SToby Isaac 6572c58f1c22SToby Isaac Input Parameters: 6573c58f1c22SToby Isaac + dm - The DM object 6574c58f1c22SToby Isaac . name - The label name 6575c58f1c22SToby Isaac - value - The label value for this point 6576c58f1c22SToby Isaac 6577c58f1c22SToby Isaac Output Parameter: 6578c58f1c22SToby Isaac 6579c58f1c22SToby Isaac Level: beginner 6580c58f1c22SToby Isaac 6581db781477SPatrick Sanan .seealso: `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6582c58f1c22SToby Isaac @*/ 6583c58f1c22SToby Isaac PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6584c58f1c22SToby Isaac { 6585c58f1c22SToby Isaac DMLabel label; 6586c58f1c22SToby Isaac 6587c58f1c22SToby Isaac PetscFunctionBegin; 6588c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6589c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 65909566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6591c58f1c22SToby Isaac if (!label) PetscFunctionReturn(0); 65929566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 6593c58f1c22SToby Isaac PetscFunctionReturn(0); 6594c58f1c22SToby Isaac } 6595c58f1c22SToby Isaac 6596c58f1c22SToby Isaac /*@ 6597c58f1c22SToby Isaac DMGetNumLabels - Return the number of labels defined by the mesh 6598c58f1c22SToby Isaac 6599c58f1c22SToby Isaac Not Collective 6600c58f1c22SToby Isaac 6601c58f1c22SToby Isaac Input Parameter: 6602c58f1c22SToby Isaac . dm - The DM object 6603c58f1c22SToby Isaac 6604c58f1c22SToby Isaac Output Parameter: 6605c58f1c22SToby Isaac . numLabels - the number of Labels 6606c58f1c22SToby Isaac 6607c58f1c22SToby Isaac Level: intermediate 6608c58f1c22SToby Isaac 6609db781477SPatrick Sanan .seealso: `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6610c58f1c22SToby Isaac @*/ 6611c58f1c22SToby Isaac PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 6612c58f1c22SToby Isaac { 66135d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6614c58f1c22SToby Isaac PetscInt n = 0; 6615c58f1c22SToby Isaac 6616c58f1c22SToby Isaac PetscFunctionBegin; 6617c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6618534a8f05SLisandro Dalcin PetscValidIntPointer(numLabels, 2); 6619c58f1c22SToby Isaac while (next) {++n; next = next->next;} 6620c58f1c22SToby Isaac *numLabels = n; 6621c58f1c22SToby Isaac PetscFunctionReturn(0); 6622c58f1c22SToby Isaac } 6623c58f1c22SToby Isaac 6624c58f1c22SToby Isaac /*@C 6625c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 6626c58f1c22SToby Isaac 6627c58f1c22SToby Isaac Not Collective 6628c58f1c22SToby Isaac 6629c58f1c22SToby Isaac Input Parameters: 6630c58f1c22SToby Isaac + dm - The DM object 6631c58f1c22SToby Isaac - n - the label number 6632c58f1c22SToby Isaac 6633c58f1c22SToby Isaac Output Parameter: 6634c58f1c22SToby Isaac . name - the label name 6635c58f1c22SToby Isaac 6636c58f1c22SToby Isaac Level: intermediate 6637c58f1c22SToby Isaac 6638db781477SPatrick Sanan .seealso: `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6639c58f1c22SToby Isaac @*/ 6640c58f1c22SToby Isaac PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 6641c58f1c22SToby Isaac { 66425d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6643c58f1c22SToby Isaac PetscInt l = 0; 6644c58f1c22SToby Isaac 6645c58f1c22SToby Isaac PetscFunctionBegin; 6646c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6647c58f1c22SToby Isaac PetscValidPointer(name, 3); 6648c58f1c22SToby Isaac while (next) { 6649c58f1c22SToby Isaac if (l == n) { 66509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, name)); 6651c58f1c22SToby Isaac PetscFunctionReturn(0); 6652c58f1c22SToby Isaac } 6653c58f1c22SToby Isaac ++l; 6654c58f1c22SToby Isaac next = next->next; 6655c58f1c22SToby Isaac } 665663a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 6657c58f1c22SToby Isaac } 6658c58f1c22SToby Isaac 6659c58f1c22SToby Isaac /*@C 6660c58f1c22SToby Isaac DMHasLabel - Determine whether the mesh has a label of a given name 6661c58f1c22SToby Isaac 6662c58f1c22SToby Isaac Not Collective 6663c58f1c22SToby Isaac 6664c58f1c22SToby Isaac Input Parameters: 6665c58f1c22SToby Isaac + dm - The DM object 6666c58f1c22SToby Isaac - name - The label name 6667c58f1c22SToby Isaac 6668c58f1c22SToby Isaac Output Parameter: 6669c58f1c22SToby Isaac . hasLabel - PETSC_TRUE if the label is present 6670c58f1c22SToby Isaac 6671c58f1c22SToby Isaac Level: intermediate 6672c58f1c22SToby Isaac 6673db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6674c58f1c22SToby Isaac @*/ 6675c58f1c22SToby Isaac PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 6676c58f1c22SToby Isaac { 66775d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6678d67d17b1SMatthew G. Knepley const char *lname; 6679c58f1c22SToby Isaac 6680c58f1c22SToby Isaac PetscFunctionBegin; 6681c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6682c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6683534a8f05SLisandro Dalcin PetscValidBoolPointer(hasLabel, 3); 6684c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 6685c58f1c22SToby Isaac while (next) { 66869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, &lname)); 66879566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 6688c58f1c22SToby Isaac if (*hasLabel) break; 6689c58f1c22SToby Isaac next = next->next; 6690c58f1c22SToby Isaac } 6691c58f1c22SToby Isaac PetscFunctionReturn(0); 6692c58f1c22SToby Isaac } 6693c58f1c22SToby Isaac 6694c58f1c22SToby Isaac /*@C 6695c58f1c22SToby Isaac DMGetLabel - Return the label of a given name, or NULL 6696c58f1c22SToby Isaac 6697c58f1c22SToby Isaac Not Collective 6698c58f1c22SToby Isaac 6699c58f1c22SToby Isaac Input Parameters: 6700c58f1c22SToby Isaac + dm - The DM object 6701c58f1c22SToby Isaac - name - The label name 6702c58f1c22SToby Isaac 6703c58f1c22SToby Isaac Output Parameter: 6704c58f1c22SToby Isaac . label - The DMLabel, or NULL if the label is absent 6705c58f1c22SToby Isaac 67066d7c9049SMatthew G. Knepley Note: Some of the default labels in a DMPlex will be 67076d7c9049SMatthew G. Knepley $ "depth" - Holds the depth (co-dimension) of each mesh point 67086d7c9049SMatthew G. Knepley $ "celltype" - Holds the topological type of each cell 67096d7c9049SMatthew G. Knepley $ "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 67106d7c9049SMatthew G. Knepley $ "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 67116d7c9049SMatthew G. Knepley $ "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 67126d7c9049SMatthew G. Knepley $ "Vertex Sets" - Mirrors the vertex sets defined by GMsh 67136d7c9049SMatthew G. Knepley 6714c58f1c22SToby Isaac Level: intermediate 6715c58f1c22SToby Isaac 6716db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 6717c58f1c22SToby Isaac @*/ 6718c58f1c22SToby Isaac PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 6719c58f1c22SToby Isaac { 67205d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6721c58f1c22SToby Isaac PetscBool hasLabel; 6722d67d17b1SMatthew G. Knepley const char *lname; 6723c58f1c22SToby Isaac 6724c58f1c22SToby Isaac PetscFunctionBegin; 6725c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6726c58f1c22SToby Isaac PetscValidCharPointer(name, 2); 6727c58f1c22SToby Isaac PetscValidPointer(label, 3); 6728c58f1c22SToby Isaac *label = NULL; 6729c58f1c22SToby Isaac while (next) { 67309566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, &lname)); 67319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 6732c58f1c22SToby Isaac if (hasLabel) { 6733c58f1c22SToby Isaac *label = next->label; 6734c58f1c22SToby Isaac break; 6735c58f1c22SToby Isaac } 6736c58f1c22SToby Isaac next = next->next; 6737c58f1c22SToby Isaac } 6738c58f1c22SToby Isaac PetscFunctionReturn(0); 6739c58f1c22SToby Isaac } 6740c58f1c22SToby Isaac 6741c58f1c22SToby Isaac /*@C 6742c58f1c22SToby Isaac DMGetLabelByNum - Return the nth label 6743c58f1c22SToby Isaac 6744c58f1c22SToby Isaac Not Collective 6745c58f1c22SToby Isaac 6746c58f1c22SToby Isaac Input Parameters: 6747c58f1c22SToby Isaac + dm - The DM object 6748c58f1c22SToby Isaac - n - the label number 6749c58f1c22SToby Isaac 6750c58f1c22SToby Isaac Output Parameter: 6751c58f1c22SToby Isaac . label - the label 6752c58f1c22SToby Isaac 6753c58f1c22SToby Isaac Level: intermediate 6754c58f1c22SToby Isaac 6755db781477SPatrick Sanan .seealso: `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6756c58f1c22SToby Isaac @*/ 6757c58f1c22SToby Isaac PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 6758c58f1c22SToby Isaac { 67595d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6760c58f1c22SToby Isaac PetscInt l = 0; 6761c58f1c22SToby Isaac 6762c58f1c22SToby Isaac PetscFunctionBegin; 6763c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6764c58f1c22SToby Isaac PetscValidPointer(label, 3); 6765c58f1c22SToby Isaac while (next) { 6766c58f1c22SToby Isaac if (l == n) { 6767c58f1c22SToby Isaac *label = next->label; 6768c58f1c22SToby Isaac PetscFunctionReturn(0); 6769c58f1c22SToby Isaac } 6770c58f1c22SToby Isaac ++l; 6771c58f1c22SToby Isaac next = next->next; 6772c58f1c22SToby Isaac } 677363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 6774c58f1c22SToby Isaac } 6775c58f1c22SToby Isaac 6776c58f1c22SToby Isaac /*@C 6777c58f1c22SToby Isaac DMAddLabel - Add the label to this mesh 6778c58f1c22SToby Isaac 6779c58f1c22SToby Isaac Not Collective 6780c58f1c22SToby Isaac 6781c58f1c22SToby Isaac Input Parameters: 6782c58f1c22SToby Isaac + dm - The DM object 6783c58f1c22SToby Isaac - label - The DMLabel 6784c58f1c22SToby Isaac 6785c58f1c22SToby Isaac Level: developer 6786c58f1c22SToby Isaac 6787db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6788c58f1c22SToby Isaac @*/ 6789c58f1c22SToby Isaac PetscErrorCode DMAddLabel(DM dm, DMLabel label) 6790c58f1c22SToby Isaac { 67915d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 6792c58f1c22SToby Isaac PetscBool hasLabel; 6793d67d17b1SMatthew G. Knepley const char *lname; 67945d80c0bfSVaclav Hapla PetscBool flg; 6795c58f1c22SToby Isaac 6796c58f1c22SToby Isaac PetscFunctionBegin; 6797c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &lname)); 67999566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 68007a8be351SBarry Smith PetscCheck(!hasLabel,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 68019566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 6802c58f1c22SToby Isaac tmpLabel->label = label; 6803c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 68045d80c0bfSVaclav Hapla for (p=&dm->labels; (l=*p); p=&l->next) {} 68055d80c0bfSVaclav Hapla *p = tmpLabel; 68069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 68079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 68085d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 68099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 6810ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 6811c58f1c22SToby Isaac PetscFunctionReturn(0); 6812c58f1c22SToby Isaac } 6813c58f1c22SToby Isaac 6814c58f1c22SToby Isaac /*@C 68154a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 68164a7ee7d0SMatthew G. Knepley 68174a7ee7d0SMatthew G. Knepley Not Collective 68184a7ee7d0SMatthew G. Knepley 68194a7ee7d0SMatthew G. Knepley Input Parameters: 68204a7ee7d0SMatthew G. Knepley + dm - The DM object 68214a7ee7d0SMatthew G. Knepley - label - The DMLabel, having the same name, to substitute 68224a7ee7d0SMatthew G. Knepley 68234a7ee7d0SMatthew G. Knepley Note: Some of the default labels in a DMPlex will be 68244a7ee7d0SMatthew G. Knepley $ "depth" - Holds the depth (co-dimension) of each mesh point 68254a7ee7d0SMatthew G. Knepley $ "celltype" - Holds the topological type of each cell 68264a7ee7d0SMatthew G. Knepley $ "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 68274a7ee7d0SMatthew G. Knepley $ "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 68284a7ee7d0SMatthew G. Knepley $ "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 68294a7ee7d0SMatthew G. Knepley $ "Vertex Sets" - Mirrors the vertex sets defined by GMsh 68304a7ee7d0SMatthew G. Knepley 68314a7ee7d0SMatthew G. Knepley Level: intermediate 68324a7ee7d0SMatthew G. Knepley 6833db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 68344a7ee7d0SMatthew G. Knepley @*/ 68354a7ee7d0SMatthew G. Knepley PetscErrorCode DMSetLabel(DM dm, DMLabel label) 68364a7ee7d0SMatthew G. Knepley { 68374a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 68384a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 68394a7ee7d0SMatthew G. Knepley const char *name, *lname; 68404a7ee7d0SMatthew G. Knepley 68414a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 68424a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68434a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) label, &name)); 68454a7ee7d0SMatthew G. Knepley while (next) { 68469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, &lname)); 68479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 68484a7ee7d0SMatthew G. Knepley if (hasLabel) { 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) label)); 68509566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 68514a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 68529566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 68534a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 68549566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 68554a7ee7d0SMatthew G. Knepley next->label = label; 68564a7ee7d0SMatthew G. Knepley break; 68574a7ee7d0SMatthew G. Knepley } 68584a7ee7d0SMatthew G. Knepley next = next->next; 68594a7ee7d0SMatthew G. Knepley } 68604a7ee7d0SMatthew G. Knepley PetscFunctionReturn(0); 68614a7ee7d0SMatthew G. Knepley } 68624a7ee7d0SMatthew G. Knepley 68634a7ee7d0SMatthew G. Knepley /*@C 6864e5472504SVaclav Hapla DMRemoveLabel - Remove the label given by name from this mesh 6865c58f1c22SToby Isaac 6866c58f1c22SToby Isaac Not Collective 6867c58f1c22SToby Isaac 6868c58f1c22SToby Isaac Input Parameters: 6869c58f1c22SToby Isaac + dm - The DM object 6870c58f1c22SToby Isaac - name - The label name 6871c58f1c22SToby Isaac 6872c58f1c22SToby Isaac Output Parameter: 6873c58f1c22SToby Isaac . label - The DMLabel, or NULL if the label is absent 6874c58f1c22SToby Isaac 6875c58f1c22SToby Isaac Level: developer 6876c58f1c22SToby Isaac 6877e5472504SVaclav Hapla Notes: 6878e5472504SVaclav Hapla DMRemoveLabel(dm,name,NULL) removes the label from dm and calls 6879e5472504SVaclav Hapla DMLabelDestroy() on the label. 6880e5472504SVaclav Hapla 6881e5472504SVaclav Hapla DMRemoveLabel(dm,name,&label) removes the label from dm, but it DOES NOT 6882e5472504SVaclav Hapla call DMLabelDestroy(). Instead, the label is returned and the user is 6883e5472504SVaclav Hapla responsible of calling DMLabelDestroy() at some point. 6884e5472504SVaclav Hapla 6885db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 6886c58f1c22SToby Isaac @*/ 6887c58f1c22SToby Isaac PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 6888c58f1c22SToby Isaac { 688995d578d6SVaclav Hapla DMLabelLink link, *pnext; 6890c58f1c22SToby Isaac PetscBool hasLabel; 6891d67d17b1SMatthew G. Knepley const char *lname; 6892c58f1c22SToby Isaac 6893c58f1c22SToby Isaac PetscFunctionBegin; 6894c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6895e5472504SVaclav Hapla PetscValidCharPointer(name, 2); 6896e5472504SVaclav Hapla if (label) { 6897e5472504SVaclav Hapla PetscValidPointer(label, 3); 6898c58f1c22SToby Isaac *label = NULL; 6899e5472504SVaclav Hapla } 69005d80c0bfSVaclav Hapla for (pnext=&dm->labels; (link=*pnext); pnext=&link->next) { 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) link->label, &lname)); 69029566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 6903c58f1c22SToby Isaac if (hasLabel) { 690495d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 69059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 690695d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 69079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 6908ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 690995d578d6SVaclav Hapla if (label) *label = link->label; 69109566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 69119566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 6912c58f1c22SToby Isaac break; 6913c58f1c22SToby Isaac } 6914c58f1c22SToby Isaac } 6915c58f1c22SToby Isaac PetscFunctionReturn(0); 6916c58f1c22SToby Isaac } 6917c58f1c22SToby Isaac 6918306894acSVaclav Hapla /*@ 6919306894acSVaclav Hapla DMRemoveLabelBySelf - Remove the label from this mesh 6920306894acSVaclav Hapla 6921306894acSVaclav Hapla Not Collective 6922306894acSVaclav Hapla 6923306894acSVaclav Hapla Input Parameters: 6924306894acSVaclav Hapla + dm - The DM object 6925876aa926SVaclav Hapla . label - The DMLabel to be removed from the DM 6926306894acSVaclav Hapla - failNotFound - Should it fail if the label is not found in the DM? 6927306894acSVaclav Hapla 6928306894acSVaclav Hapla Level: developer 6929306894acSVaclav Hapla 6930306894acSVaclav Hapla Notes: 6931306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 6932306894acSVaclav Hapla If the DM has an exclusive reference to the label, it gets destroyed and 6933306894acSVaclav Hapla *label nullified. 6934306894acSVaclav Hapla 6935db781477SPatrick Sanan .seealso: `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 6936306894acSVaclav Hapla @*/ 6937306894acSVaclav Hapla PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 6938306894acSVaclav Hapla { 693943e45a93SVaclav Hapla DMLabelLink link, *pnext; 6940306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 6941306894acSVaclav Hapla 6942306894acSVaclav Hapla PetscFunctionBegin; 6943306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6944306894acSVaclav Hapla PetscValidPointer(label, 2); 6945f39a9ae0SVaclav Hapla if (!*label && !failNotFound) PetscFunctionReturn(0); 6946306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 6947306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm,failNotFound,3); 69485d80c0bfSVaclav Hapla for (pnext=&dm->labels; (link=*pnext); pnext=&link->next) { 694943e45a93SVaclav Hapla if (*label == link->label) { 6950306894acSVaclav Hapla hasLabel = PETSC_TRUE; 695143e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 6952306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 6953ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 695443e45a93SVaclav Hapla if (((PetscObject) link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 69559566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 69569566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 6957306894acSVaclav Hapla break; 6958306894acSVaclav Hapla } 6959306894acSVaclav Hapla } 69607a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound,PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 6961306894acSVaclav Hapla PetscFunctionReturn(0); 6962306894acSVaclav Hapla } 6963306894acSVaclav Hapla 6964c58f1c22SToby Isaac /*@C 6965c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 6966c58f1c22SToby Isaac 6967c58f1c22SToby Isaac Not Collective 6968c58f1c22SToby Isaac 6969c58f1c22SToby Isaac Input Parameters: 6970c58f1c22SToby Isaac + dm - The DM object 6971c58f1c22SToby Isaac - name - The label name 6972c58f1c22SToby Isaac 6973c58f1c22SToby Isaac Output Parameter: 6974c58f1c22SToby Isaac . output - The flag for output 6975c58f1c22SToby Isaac 6976c58f1c22SToby Isaac Level: developer 6977c58f1c22SToby Isaac 6978db781477SPatrick Sanan .seealso: `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6979c58f1c22SToby Isaac @*/ 6980c58f1c22SToby Isaac PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 6981c58f1c22SToby Isaac { 69825d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 6983d67d17b1SMatthew G. Knepley const char *lname; 6984c58f1c22SToby Isaac 6985c58f1c22SToby Isaac PetscFunctionBegin; 6986c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6987dadcf809SJacob Faibussowitsch PetscValidCharPointer(name, 2); 6988dadcf809SJacob Faibussowitsch PetscValidBoolPointer(output, 3); 6989c58f1c22SToby Isaac while (next) { 6990c58f1c22SToby Isaac PetscBool flg; 6991c58f1c22SToby Isaac 69929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, &lname)); 69939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 6994c58f1c22SToby Isaac if (flg) {*output = next->output; PetscFunctionReturn(0);} 6995c58f1c22SToby Isaac next = next->next; 6996c58f1c22SToby Isaac } 699798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 6998c58f1c22SToby Isaac } 6999c58f1c22SToby Isaac 7000c58f1c22SToby Isaac /*@C 7001c58f1c22SToby Isaac DMSetLabelOutput - Set the output flag for a given label 7002c58f1c22SToby Isaac 7003c58f1c22SToby Isaac Not Collective 7004c58f1c22SToby Isaac 7005c58f1c22SToby Isaac Input Parameters: 7006c58f1c22SToby Isaac + dm - The DM object 7007c58f1c22SToby Isaac . name - The label name 7008c58f1c22SToby Isaac - output - The flag for output 7009c58f1c22SToby Isaac 7010c58f1c22SToby Isaac Level: developer 7011c58f1c22SToby Isaac 7012db781477SPatrick Sanan .seealso: `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7013c58f1c22SToby Isaac @*/ 7014c58f1c22SToby Isaac PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7015c58f1c22SToby Isaac { 70165d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7017d67d17b1SMatthew G. Knepley const char *lname; 7018c58f1c22SToby Isaac 7019c58f1c22SToby Isaac PetscFunctionBegin; 7020c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7021534a8f05SLisandro Dalcin PetscValidCharPointer(name, 2); 7022c58f1c22SToby Isaac while (next) { 7023c58f1c22SToby Isaac PetscBool flg; 7024c58f1c22SToby Isaac 70259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) next->label, &lname)); 70269566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 7027c58f1c22SToby Isaac if (flg) {next->output = output; PetscFunctionReturn(0);} 7028c58f1c22SToby Isaac next = next->next; 7029c58f1c22SToby Isaac } 703098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7031c58f1c22SToby Isaac } 7032c58f1c22SToby Isaac 7033c58f1c22SToby Isaac /*@ 7034c58f1c22SToby Isaac DMCopyLabels - Copy labels from one mesh to another with a superset of the points 7035c58f1c22SToby Isaac 7036d083f849SBarry Smith Collective on dmA 7037c58f1c22SToby Isaac 7038d8d19677SJose E. Roman Input Parameters: 70395d80c0bfSVaclav Hapla + dmA - The DM object with initial labels 70402cbb9b06SVaclav Hapla . dmB - The DM object to which labels are copied 70415d80c0bfSVaclav Hapla . mode - Copy labels by pointers (PETSC_OWN_POINTER) or duplicate them (PETSC_COPY_VALUES) 70422cbb9b06SVaclav Hapla . all - Copy all labels including "depth", "dim", and "celltype" (PETSC_TRUE) which are otherwise ignored (PETSC_FALSE) 70432cbb9b06SVaclav Hapla - emode - How to behave when a DMLabel in the source and destination DMs with the same name is encountered (see DMCopyLabelsMode) 7044c58f1c22SToby Isaac 7045c58f1c22SToby Isaac Level: intermediate 7046c58f1c22SToby Isaac 70472cbb9b06SVaclav Hapla Notes: 70482cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7049c58f1c22SToby Isaac 7050db781477SPatrick Sanan .seealso: `DMAddLabel()`, `DMCopyLabelsMode` 7051c58f1c22SToby Isaac @*/ 70522cbb9b06SVaclav Hapla PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7053c58f1c22SToby Isaac { 70542cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7055c58f1c22SToby Isaac const char *name; 7056c58f1c22SToby Isaac PetscBool flg; 70575d80c0bfSVaclav Hapla DMLabelLink link; 7058c58f1c22SToby Isaac 70595d80c0bfSVaclav Hapla PetscFunctionBegin; 70605d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 70615d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 70625d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode,3); 70635d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 70647a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER,PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 70655d80c0bfSVaclav Hapla if (dmA == dmB) PetscFunctionReturn(0); 70665d80c0bfSVaclav Hapla for (link=dmA->labels; link; link=link->next) { 70675d80c0bfSVaclav Hapla label=link->label; 70689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 70695d80c0bfSVaclav Hapla if (!all) { 70709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7071c58f1c22SToby Isaac if (flg) continue; 70729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 70737d5acc75SStefano Zampini if (flg) continue; 70749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7075ba2698f1SMatthew G. Knepley if (flg) continue; 70765d80c0bfSVaclav Hapla } 70779566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 70782cbb9b06SVaclav Hapla if (labelOld) { 70792cbb9b06SVaclav Hapla switch (emode) { 70802cbb9b06SVaclav Hapla case DM_COPY_LABELS_KEEP: 70812cbb9b06SVaclav Hapla continue; 70822cbb9b06SVaclav Hapla case DM_COPY_LABELS_REPLACE: 70839566063dSJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 70842cbb9b06SVaclav Hapla break; 70852cbb9b06SVaclav Hapla case DM_COPY_LABELS_FAIL: 708698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 70872cbb9b06SVaclav Hapla default: 70887a8be351SBarry Smith SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 70892cbb9b06SVaclav Hapla } 70902cbb9b06SVaclav Hapla } 70915d80c0bfSVaclav Hapla if (mode==PETSC_COPY_VALUES) { 70929566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 70935d80c0bfSVaclav Hapla } else { 70945d80c0bfSVaclav Hapla labelNew = label; 70955d80c0bfSVaclav Hapla } 70969566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 70979566063dSJacob Faibussowitsch if (mode==PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7098c58f1c22SToby Isaac } 7099c58f1c22SToby Isaac PetscFunctionReturn(0); 7100c58f1c22SToby Isaac } 7101461a15a0SLisandro Dalcin 7102609dae6eSVaclav Hapla /*@C 7103609dae6eSVaclav Hapla DMCompareLabels - Compare labels of two DMPlex meshes 7104609dae6eSVaclav Hapla 71055efe38ccSVaclav Hapla Collective 7106609dae6eSVaclav Hapla 7107609dae6eSVaclav Hapla Input Parameters: 7108609dae6eSVaclav Hapla + dm0 - First DM object 7109609dae6eSVaclav Hapla - dm1 - Second DM object 7110609dae6eSVaclav Hapla 7111609dae6eSVaclav Hapla Output Parameters 71125efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 7113609dae6eSVaclav Hapla - message - (Optional) Message describing the difference, or NULL if there is no difference 7114609dae6eSVaclav Hapla 7115609dae6eSVaclav Hapla Level: intermediate 7116609dae6eSVaclav Hapla 7117609dae6eSVaclav Hapla Notes: 71185efe38ccSVaclav Hapla The output flag equal is the same on all processes. 71195efe38ccSVaclav Hapla If it is passed as NULL and difference is found, an error is thrown on all processes. 71205efe38ccSVaclav Hapla Make sure to pass NULL on all processes. 7121609dae6eSVaclav Hapla 71225efe38ccSVaclav Hapla The output message is set independently on each rank. 71235efe38ccSVaclav Hapla It is set to NULL if no difference was found on the current rank. It must be freed by user. 71245efe38ccSVaclav Hapla If message is passed as NULL and difference is found, the difference description is printed to stderr in synchronized manner. 71255efe38ccSVaclav Hapla Make sure to pass NULL on all processes. 7126609dae6eSVaclav Hapla 7127609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7128609dae6eSVaclav Hapla DMLabelCompare() is used to compare each pair of labels with the same name. 7129609dae6eSVaclav Hapla 7130609dae6eSVaclav Hapla Fortran Notes: 7131609dae6eSVaclav Hapla This function is currently not available from Fortran. 7132609dae6eSVaclav Hapla 7133db781477SPatrick Sanan .seealso: `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7134609dae6eSVaclav Hapla @*/ 71355efe38ccSVaclav Hapla PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7136609dae6eSVaclav Hapla { 71375efe38ccSVaclav Hapla PetscInt n, i; 7138609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 71395efe38ccSVaclav Hapla PetscBool eq; 7140609dae6eSVaclav Hapla MPI_Comm comm; 71415efe38ccSVaclav Hapla PetscMPIInt rank; 7142609dae6eSVaclav Hapla 7143609dae6eSVaclav Hapla PetscFunctionBegin; 7144609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0,DM_CLASSID,1); 7145609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1,DM_CLASSID,2); 7146609dae6eSVaclav Hapla PetscCheckSameComm(dm0,1,dm1,2); 71475efe38ccSVaclav Hapla if (equal) PetscValidBoolPointer(equal,3); 7148609dae6eSVaclav Hapla if (message) PetscValidPointer(message, 4); 71499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 71509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 71515efe38ccSVaclav Hapla { 71525efe38ccSVaclav Hapla PetscInt n1; 71535efe38ccSVaclav Hapla 71549566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 71559566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 71565efe38ccSVaclav Hapla eq = (PetscBool) (n == n1); 71575efe38ccSVaclav Hapla if (!eq) { 715863a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7159609dae6eSVaclav Hapla } 71609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 71615efe38ccSVaclav Hapla if (!eq) goto finish; 71625efe38ccSVaclav Hapla } 71635efe38ccSVaclav Hapla for (i=0; i<n; i++) { 7164609dae6eSVaclav Hapla DMLabel l0, l1; 7165609dae6eSVaclav Hapla const char *name; 7166609dae6eSVaclav Hapla char *msgInner; 7167609dae6eSVaclav Hapla 7168609dae6eSVaclav Hapla /* Ignore label order */ 71699566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 71709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 71719566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7172609dae6eSVaclav Hapla if (!l1) { 717363a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 71745efe38ccSVaclav Hapla eq = PETSC_FALSE; 71755efe38ccSVaclav Hapla break; 7176609dae6eSVaclav Hapla } 71779566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 71789566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 71799566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 71805efe38ccSVaclav Hapla if (!eq) break; 7181609dae6eSVaclav Hapla } 71829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7183609dae6eSVaclav Hapla finish: 71845efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7185609dae6eSVaclav Hapla if (message) { 7186609dae6eSVaclav Hapla *message = NULL; 7187609dae6eSVaclav Hapla if (msg[0]) { 71889566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(msg, message)); 7189609dae6eSVaclav Hapla } 71905efe38ccSVaclav Hapla } else { 71915efe38ccSVaclav Hapla if (msg[0]) { 71929566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 7193609dae6eSVaclav Hapla } 71949566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 71955efe38ccSVaclav Hapla } 71965efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 71975efe38ccSVaclav Hapla if (equal) *equal = eq; 71987a8be351SBarry Smith else PetscCheck(eq,comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 7199609dae6eSVaclav Hapla PetscFunctionReturn(0); 7200609dae6eSVaclav Hapla } 7201609dae6eSVaclav Hapla 7202461a15a0SLisandro Dalcin PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7203461a15a0SLisandro Dalcin { 7204461a15a0SLisandro Dalcin PetscFunctionBegin; 7205461a15a0SLisandro Dalcin PetscValidPointer(label,2); 7206461a15a0SLisandro Dalcin if (!*label) { 72079566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 72089566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7209461a15a0SLisandro Dalcin } 72109566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 7211461a15a0SLisandro Dalcin PetscFunctionReturn(0); 7212461a15a0SLisandro Dalcin } 7213461a15a0SLisandro Dalcin 72140fdc7489SMatthew Knepley /* 72150fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 72160fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 72170fdc7489SMatthew Knepley (label, id) pair in the DM. 72180fdc7489SMatthew Knepley 72190fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 72200fdc7489SMatthew Knepley each label. 72210fdc7489SMatthew Knepley */ 72220fdc7489SMatthew Knepley PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 72230fdc7489SMatthew Knepley { 72240fdc7489SMatthew Knepley DMUniversalLabel ul; 72250fdc7489SMatthew Knepley PetscBool *active; 72260fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 72270fdc7489SMatthew Knepley 72280fdc7489SMatthew Knepley PetscFunctionBegin; 72299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 72309566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 72319566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 72329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 72330fdc7489SMatthew Knepley ul->Nl = 0; 72340fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 72350fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 72360fdc7489SMatthew Knepley const char *name; 72370fdc7489SMatthew Knepley 72389566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 72399566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 72409566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 72410fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 72420fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 72430fdc7489SMatthew Knepley } 72449566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl+1, &ul->offsets, ul->Nl+1, &ul->bits, ul->Nl, &ul->masks)); 72450fdc7489SMatthew Knepley ul->Nv = 0; 72460fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 72470fdc7489SMatthew Knepley DMLabel label; 72480fdc7489SMatthew Knepley PetscInt nv; 72490fdc7489SMatthew Knepley const char *name; 72500fdc7489SMatthew Knepley 72510fdc7489SMatthew Knepley if (!active[l]) continue; 72529566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 72539566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 72549566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 72559566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 72560fdc7489SMatthew Knepley ul->indices[m] = l; 72570fdc7489SMatthew Knepley ul->Nv += nv; 72580fdc7489SMatthew Knepley ul->offsets[m+1] = nv; 72590fdc7489SMatthew Knepley ul->bits[m+1] = PetscCeilReal(PetscLog2Real(nv+1)); 72600fdc7489SMatthew Knepley ++m; 72610fdc7489SMatthew Knepley } 72620fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 72630fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l-1] + ul->offsets[l]; 72640fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l-1] + ul->bits[l]; 72650fdc7489SMatthew Knepley } 72660fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 72670fdc7489SMatthew Knepley PetscInt b; 72680fdc7489SMatthew Knepley 72690fdc7489SMatthew Knepley ul->masks[l] = 0; 72700fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l+1]; ++b) ul->masks[l] |= 1 << b; 72710fdc7489SMatthew Knepley } 72729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 72730fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 72740fdc7489SMatthew Knepley DMLabel label; 72750fdc7489SMatthew Knepley IS valueIS; 72760fdc7489SMatthew Knepley const PetscInt *varr; 72770fdc7489SMatthew Knepley PetscInt nv, v; 72780fdc7489SMatthew Knepley 72790fdc7489SMatthew Knepley if (!active[l]) continue; 72809566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 72819566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 72829566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 72839566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 72840fdc7489SMatthew Knepley for (v = 0; v < nv; ++v) { 72850fdc7489SMatthew Knepley ul->values[ul->offsets[m]+v] = varr[v]; 72860fdc7489SMatthew Knepley } 72879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 72889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 72900fdc7489SMatthew Knepley ++m; 72910fdc7489SMatthew Knepley } 72929566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 72930fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 72940fdc7489SMatthew Knepley PetscInt uval = 0; 72950fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 72960fdc7489SMatthew Knepley 72970fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 72980fdc7489SMatthew Knepley DMLabel label; 72990649b39aSStefano Zampini PetscInt val, defval, loc, nv; 73000fdc7489SMatthew Knepley 73010fdc7489SMatthew Knepley if (!active[l]) continue; 73029566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 73039566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 73049566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 73050fdc7489SMatthew Knepley if (val == defval) {++m; continue;} 73060649b39aSStefano Zampini nv = ul->offsets[m+1]-ul->offsets[m]; 73070fdc7489SMatthew Knepley marked = PETSC_TRUE; 73089566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 730963a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0,PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 73100fdc7489SMatthew Knepley uval += (loc+1) << ul->bits[m]; 73110fdc7489SMatthew Knepley ++m; 73120fdc7489SMatthew Knepley } 73139566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 73140fdc7489SMatthew Knepley } 73159566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 73160fdc7489SMatthew Knepley *universal = ul; 73170fdc7489SMatthew Knepley PetscFunctionReturn(0); 73180fdc7489SMatthew Knepley } 73190fdc7489SMatthew Knepley 73200fdc7489SMatthew Knepley PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 73210fdc7489SMatthew Knepley { 73220fdc7489SMatthew Knepley PetscInt l; 73230fdc7489SMatthew Knepley 73240fdc7489SMatthew Knepley PetscFunctionBegin; 73259566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 73269566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 73279566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 73289566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 73299566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 73300fdc7489SMatthew Knepley *universal = NULL; 73310fdc7489SMatthew Knepley PetscFunctionReturn(0); 73320fdc7489SMatthew Knepley } 73330fdc7489SMatthew Knepley 73340fdc7489SMatthew Knepley PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 73350fdc7489SMatthew Knepley { 73360fdc7489SMatthew Knepley PetscFunctionBegin; 73370fdc7489SMatthew Knepley PetscValidPointer(ulabel, 2); 73380fdc7489SMatthew Knepley *ulabel = ul->label; 73390fdc7489SMatthew Knepley PetscFunctionReturn(0); 73400fdc7489SMatthew Knepley } 73410fdc7489SMatthew Knepley 73420fdc7489SMatthew Knepley PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 73430fdc7489SMatthew Knepley { 73440fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 73450fdc7489SMatthew Knepley 73460fdc7489SMatthew Knepley PetscFunctionBegin; 7347064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 73480fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 73499566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 73509566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 73510fdc7489SMatthew Knepley } 73520fdc7489SMatthew Knepley if (preserveOrder) { 73530fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 73540fdc7489SMatthew Knepley const char *name; 73550fdc7489SMatthew Knepley PetscBool match; 73560fdc7489SMatthew Knepley 73579566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 73589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 735963a3b9bcSJacob Faibussowitsch PetscCheck(match,PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 73600fdc7489SMatthew Knepley } 73610fdc7489SMatthew Knepley } 73620fdc7489SMatthew Knepley PetscFunctionReturn(0); 73630fdc7489SMatthew Knepley } 73640fdc7489SMatthew Knepley 73650fdc7489SMatthew Knepley PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 73660fdc7489SMatthew Knepley { 73670fdc7489SMatthew Knepley PetscInt l; 73680fdc7489SMatthew Knepley 73690fdc7489SMatthew Knepley PetscFunctionBegin; 73700fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 73710fdc7489SMatthew Knepley DMLabel label; 73720fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 73730fdc7489SMatthew Knepley 73740fdc7489SMatthew Knepley if (lval) { 73759566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 73769566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 73779566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l]+lval-1])); 73780fdc7489SMatthew Knepley } 73790fdc7489SMatthew Knepley } 73800fdc7489SMatthew Knepley PetscFunctionReturn(0); 73810fdc7489SMatthew Knepley } 7382a8fb8f29SToby Isaac 7383a8fb8f29SToby Isaac /*@ 7384a8fb8f29SToby Isaac DMGetCoarseDM - Get the coarse mesh from which this was obtained by refinement 7385a8fb8f29SToby Isaac 7386a8fb8f29SToby Isaac Input Parameter: 7387a8fb8f29SToby Isaac . dm - The DM object 7388a8fb8f29SToby Isaac 7389a8fb8f29SToby Isaac Output Parameter: 7390a8fb8f29SToby Isaac . cdm - The coarse DM 7391a8fb8f29SToby Isaac 7392a8fb8f29SToby Isaac Level: intermediate 7393a8fb8f29SToby Isaac 7394db781477SPatrick Sanan .seealso: `DMSetCoarseDM()` 7395a8fb8f29SToby Isaac @*/ 7396a8fb8f29SToby Isaac PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7397a8fb8f29SToby Isaac { 7398a8fb8f29SToby Isaac PetscFunctionBegin; 7399a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7400a8fb8f29SToby Isaac PetscValidPointer(cdm, 2); 7401a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 7402a8fb8f29SToby Isaac PetscFunctionReturn(0); 7403a8fb8f29SToby Isaac } 7404a8fb8f29SToby Isaac 7405a8fb8f29SToby Isaac /*@ 7406a8fb8f29SToby Isaac DMSetCoarseDM - Set the coarse mesh from which this was obtained by refinement 7407a8fb8f29SToby Isaac 7408a8fb8f29SToby Isaac Input Parameters: 7409a8fb8f29SToby Isaac + dm - The DM object 7410a8fb8f29SToby Isaac - cdm - The coarse DM 7411a8fb8f29SToby Isaac 7412a8fb8f29SToby Isaac Level: intermediate 7413a8fb8f29SToby Isaac 7414db781477SPatrick Sanan .seealso: `DMGetCoarseDM()` 7415a8fb8f29SToby Isaac @*/ 7416a8fb8f29SToby Isaac PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7417a8fb8f29SToby Isaac { 7418a8fb8f29SToby Isaac PetscFunctionBegin; 7419a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7420a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 74219566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 74229566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7423a8fb8f29SToby Isaac dm->coarseMesh = cdm; 7424a8fb8f29SToby Isaac PetscFunctionReturn(0); 7425a8fb8f29SToby Isaac } 7426a8fb8f29SToby Isaac 742788bdff64SToby Isaac /*@ 742888bdff64SToby Isaac DMGetFineDM - Get the fine mesh from which this was obtained by refinement 742988bdff64SToby Isaac 743088bdff64SToby Isaac Input Parameter: 743188bdff64SToby Isaac . dm - The DM object 743288bdff64SToby Isaac 743388bdff64SToby Isaac Output Parameter: 743488bdff64SToby Isaac . fdm - The fine DM 743588bdff64SToby Isaac 743688bdff64SToby Isaac Level: intermediate 743788bdff64SToby Isaac 7438db781477SPatrick Sanan .seealso: `DMSetFineDM()` 743988bdff64SToby Isaac @*/ 744088bdff64SToby Isaac PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 744188bdff64SToby Isaac { 744288bdff64SToby Isaac PetscFunctionBegin; 744388bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 744488bdff64SToby Isaac PetscValidPointer(fdm, 2); 744588bdff64SToby Isaac *fdm = dm->fineMesh; 744688bdff64SToby Isaac PetscFunctionReturn(0); 744788bdff64SToby Isaac } 744888bdff64SToby Isaac 744988bdff64SToby Isaac /*@ 745088bdff64SToby Isaac DMSetFineDM - Set the fine mesh from which this was obtained by refinement 745188bdff64SToby Isaac 745288bdff64SToby Isaac Input Parameters: 745388bdff64SToby Isaac + dm - The DM object 745488bdff64SToby Isaac - fdm - The fine DM 745588bdff64SToby Isaac 745688bdff64SToby Isaac Level: intermediate 745788bdff64SToby Isaac 7458db781477SPatrick Sanan .seealso: `DMGetFineDM()` 745988bdff64SToby Isaac @*/ 746088bdff64SToby Isaac PetscErrorCode DMSetFineDM(DM dm, DM fdm) 746188bdff64SToby Isaac { 746288bdff64SToby Isaac PetscFunctionBegin; 746388bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 746488bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 74659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 74669566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 746788bdff64SToby Isaac dm->fineMesh = fdm; 746888bdff64SToby Isaac PetscFunctionReturn(0); 746988bdff64SToby Isaac } 747088bdff64SToby Isaac 7471a6ba4734SToby Isaac /*=== DMBoundary code ===*/ 7472a6ba4734SToby Isaac 7473a6ba4734SToby Isaac /*@C 7474a6ba4734SToby Isaac DMAddBoundary - Add a boundary condition to the model 7475a6ba4734SToby Isaac 7476783e2ec8SMatthew G. Knepley Collective on dm 7477783e2ec8SMatthew G. Knepley 7478a6ba4734SToby Isaac Input Parameters: 74794c258f51SMatthew G. Knepley + dm - The DM, with a PetscDS that matches the problem being constrained 7480f971fd6bSMatthew G. Knepley . type - The type of condition, e.g. DM_BC_ESSENTIAL_ANALYTIC/DM_BC_ESSENTIAL_FIELD (Dirichlet), or DM_BC_NATURAL (Neumann) 7481a6ba4734SToby Isaac . name - The BC name 748245480ffeSMatthew G. Knepley . label - The label defining constrained points 748345480ffeSMatthew G. Knepley . Nv - The number of DMLabel values for constrained points 748445480ffeSMatthew G. Knepley . values - An array of values for constrained points 7485a6ba4734SToby Isaac . field - The field to constrain 748645480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7487a6ba4734SToby Isaac . comps - An array of constrained component numbers 7488a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 748956cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7490a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7491a6ba4734SToby Isaac 749245480ffeSMatthew G. Knepley Output Parameter: 749345480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 749445480ffeSMatthew G. Knepley 7495a6ba4734SToby Isaac Options Database Keys: 7496a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7497a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7498a6ba4734SToby Isaac 749956cf3b9cSMatthew G. Knepley Note: 750056cf3b9cSMatthew G. Knepley Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if DM_BC_ESSENTIAL, Then the calling sequence is: 750156cf3b9cSMatthew G. Knepley 750256cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 750356cf3b9cSMatthew G. Knepley 750456cf3b9cSMatthew G. Knepley If the type is DM_BC_ESSENTIAL_FIELD or other _FIELD value, then the calling sequence is: 750556cf3b9cSMatthew G. Knepley 750656cf3b9cSMatthew G. Knepley $ bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 750756cf3b9cSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 750856cf3b9cSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 750956cf3b9cSMatthew G. Knepley $ PetscReal time, const PetscReal x[], PetscScalar bcval[]) 751056cf3b9cSMatthew G. Knepley 751156cf3b9cSMatthew G. Knepley + dim - the spatial dimension 751256cf3b9cSMatthew G. Knepley . Nf - the number of fields 751356cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 751456cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 751556cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 751656cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 751756cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 751856cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 751956cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 752056cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 752156cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 752256cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 752356cf3b9cSMatthew G. Knepley . t - current time 752456cf3b9cSMatthew G. Knepley . x - coordinates of the current point 752556cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 752656cf3b9cSMatthew G. Knepley . constants - constant parameters 752756cf3b9cSMatthew G. Knepley - bcval - output values at the current point 752856cf3b9cSMatthew G. Knepley 7529ed808b8fSJed Brown Level: intermediate 7530a6ba4734SToby Isaac 7531db781477SPatrick Sanan .seealso: `DSGetBoundary()`, `PetscDSAddBoundary()` 7532a6ba4734SToby Isaac @*/ 753345480ffeSMatthew G. Knepley PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7534a6ba4734SToby Isaac { 7535e5e52638SMatthew G. Knepley PetscDS ds; 7536a6ba4734SToby Isaac 7537a6ba4734SToby Isaac PetscFunctionBegin; 7538a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7539783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 754045480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 754145480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 754245480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 754345480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 754401a5d20dSJed Brown PetscCheck(!dm->localSection,PetscObjectComm((PetscObject)dm),PETSC_ERR_ARG_WRONGSTATE,"Cannot add boundary to DM after creating local section"); 75459566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7546799db056SMatthew G. Knepley /* Complete label */ 7547799db056SMatthew G. Knepley if (label) { 7548799db056SMatthew G. Knepley PetscObject obj; 7549799db056SMatthew G. Knepley PetscClassId id; 7550799db056SMatthew G. Knepley 7551799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7552799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7553799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7554799db056SMatthew G. Knepley DM plex; 7555799db056SMatthew G. Knepley 7556799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7557799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7558799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7559799db056SMatthew G. Knepley } 7560799db056SMatthew G. Knepley } 75619566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 7562a6ba4734SToby Isaac PetscFunctionReturn(0); 7563a6ba4734SToby Isaac } 7564a6ba4734SToby Isaac 756545480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7566e6f8dbb6SToby Isaac static PetscErrorCode DMPopulateBoundary(DM dm) 7567e6f8dbb6SToby Isaac { 7568e5e52638SMatthew G. Knepley PetscDS ds; 7569dff059c6SToby Isaac DMBoundary *lastnext; 7570e6f8dbb6SToby Isaac DSBoundary dsbound; 7571e6f8dbb6SToby Isaac 7572e6f8dbb6SToby Isaac PetscFunctionBegin; 75739566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7574e5e52638SMatthew G. Knepley dsbound = ds->boundary; 757547a1f5adSToby Isaac if (dm->boundary) { 757647a1f5adSToby Isaac DMBoundary next = dm->boundary; 757747a1f5adSToby Isaac 757847a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 757947a1f5adSToby Isaac if (next->dsboundary == dsbound) PetscFunctionReturn(0); 758047a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 758147a1f5adSToby Isaac while (next) { 758247a1f5adSToby Isaac DMBoundary b = next; 758347a1f5adSToby Isaac 758447a1f5adSToby Isaac next = b->next; 75859566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 7586a6ba4734SToby Isaac } 758747a1f5adSToby Isaac dm->boundary = NULL; 7588a6ba4734SToby Isaac } 758947a1f5adSToby Isaac 7590dff059c6SToby Isaac lastnext = &(dm->boundary); 7591e6f8dbb6SToby Isaac while (dsbound) { 7592e6f8dbb6SToby Isaac DMBoundary dmbound; 7593e6f8dbb6SToby Isaac 75949566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 7595e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 759645480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 759747a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 7598dff059c6SToby Isaac *lastnext = dmbound; 7599dff059c6SToby Isaac lastnext = &(dmbound->next); 7600dff059c6SToby Isaac dsbound = dsbound->next; 7601a6ba4734SToby Isaac } 7602a6ba4734SToby Isaac PetscFunctionReturn(0); 7603a6ba4734SToby Isaac } 7604a6ba4734SToby Isaac 7605a6ba4734SToby Isaac PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 7606a6ba4734SToby Isaac { 7607b95f2879SToby Isaac DMBoundary b; 7608a6ba4734SToby Isaac 7609a6ba4734SToby Isaac PetscFunctionBegin; 7610a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7611534a8f05SLisandro Dalcin PetscValidBoolPointer(isBd, 3); 7612a6ba4734SToby Isaac *isBd = PETSC_FALSE; 76139566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 7614b95f2879SToby Isaac b = dm->boundary; 7615a6ba4734SToby Isaac while (b && !(*isBd)) { 7616e6f8dbb6SToby Isaac DMLabel label = b->label; 7617e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 7618a6ba4734SToby Isaac PetscInt i; 7619a6ba4734SToby Isaac 762045480ffeSMatthew G. Knepley if (label) { 76219566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 7622a6ba4734SToby Isaac } 7623a6ba4734SToby Isaac b = b->next; 7624a6ba4734SToby Isaac } 7625a6ba4734SToby Isaac PetscFunctionReturn(0); 7626a6ba4734SToby Isaac } 76274d6f44ffSToby Isaac 76284d6f44ffSToby Isaac /*@C 7629a6e0b375SMatthew G. Knepley DMProjectFunction - This projects the given function into the function space provided, putting the coefficients in a global vector. 7630a6e0b375SMatthew G. Knepley 7631a6e0b375SMatthew G. Knepley Collective on DM 76324d6f44ffSToby Isaac 76334d6f44ffSToby Isaac Input Parameters: 76344d6f44ffSToby Isaac + dm - The DM 76350709b2feSToby Isaac . time - The time 76364d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 76374d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 76384d6f44ffSToby Isaac - mode - The insertion mode for values 76394d6f44ffSToby Isaac 76404d6f44ffSToby Isaac Output Parameter: 76414d6f44ffSToby Isaac . X - vector 76424d6f44ffSToby Isaac 76434d6f44ffSToby Isaac Calling sequence of func: 764477b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 76454d6f44ffSToby Isaac 76464d6f44ffSToby Isaac + dim - The spatial dimension 76478ec8862eSJed Brown . time - The time at which to sample 76484d6f44ffSToby Isaac . x - The coordinates 764977b739a6SMatthew Knepley . Nc - The number of components 76504d6f44ffSToby Isaac . u - The output field values 76514d6f44ffSToby Isaac - ctx - optional user-defined function context 76524d6f44ffSToby Isaac 76534d6f44ffSToby Isaac Level: developer 76544d6f44ffSToby Isaac 7655db781477SPatrick Sanan .seealso: `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 76564d6f44ffSToby Isaac @*/ 76570709b2feSToby Isaac PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 76584d6f44ffSToby Isaac { 76594d6f44ffSToby Isaac Vec localX; 76604d6f44ffSToby Isaac 76614d6f44ffSToby Isaac PetscFunctionBegin; 76624d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 76639566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 76649566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 76659566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 76669566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 76679566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 76684d6f44ffSToby Isaac PetscFunctionReturn(0); 76694d6f44ffSToby Isaac } 76704d6f44ffSToby Isaac 7671a6e0b375SMatthew G. Knepley /*@C 7672a6e0b375SMatthew G. Knepley DMProjectFunctionLocal - This projects the given function into the function space provided, putting the coefficients in a local vector. 7673a6e0b375SMatthew G. Knepley 7674a6e0b375SMatthew G. Knepley Not collective 7675a6e0b375SMatthew G. Knepley 7676a6e0b375SMatthew G. Knepley Input Parameters: 7677a6e0b375SMatthew G. Knepley + dm - The DM 7678a6e0b375SMatthew G. Knepley . time - The time 7679a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7680a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7681a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7682a6e0b375SMatthew G. Knepley 7683a6e0b375SMatthew G. Knepley Output Parameter: 7684a6e0b375SMatthew G. Knepley . localX - vector 7685a6e0b375SMatthew G. Knepley 7686a6e0b375SMatthew G. Knepley Calling sequence of func: 768777b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7688a6e0b375SMatthew G. Knepley 7689a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7690a6e0b375SMatthew G. Knepley . x - The coordinates 769177b739a6SMatthew Knepley . Nc - The number of components 7692a6e0b375SMatthew G. Knepley . u - The output field values 7693a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7694a6e0b375SMatthew G. Knepley 7695a6e0b375SMatthew G. Knepley Level: developer 7696a6e0b375SMatthew G. Knepley 7697db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 7698a6e0b375SMatthew G. Knepley @*/ 76990709b2feSToby Isaac PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 77004d6f44ffSToby Isaac { 77014d6f44ffSToby Isaac PetscFunctionBegin; 77024d6f44ffSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7703064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX,VEC_CLASSID,6); 77047a8be351SBarry Smith PetscCheck(dm->ops->projectfunctionlocal,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMProjectFunctionLocal",((PetscObject)dm)->type_name); 77059566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlocal) (dm, time, funcs, ctxs, mode, localX)); 77064d6f44ffSToby Isaac PetscFunctionReturn(0); 77074d6f44ffSToby Isaac } 77084d6f44ffSToby Isaac 7709a6e0b375SMatthew G. Knepley /*@C 7710a6e0b375SMatthew G. Knepley DMProjectFunctionLabel - This projects the given function into the function space provided, putting the coefficients in a global vector, setting values only for points in the given label. 7711a6e0b375SMatthew G. Knepley 7712a6e0b375SMatthew G. Knepley Collective on DM 7713a6e0b375SMatthew G. Knepley 7714a6e0b375SMatthew G. Knepley Input Parameters: 7715a6e0b375SMatthew G. Knepley + dm - The DM 7716a6e0b375SMatthew G. Knepley . time - The time 7717a6e0b375SMatthew G. Knepley . label - The DMLabel selecting the portion of the mesh for projection 7718a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7719a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7720a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7721a6e0b375SMatthew G. Knepley 7722a6e0b375SMatthew G. Knepley Output Parameter: 7723a6e0b375SMatthew G. Knepley . X - vector 7724a6e0b375SMatthew G. Knepley 7725a6e0b375SMatthew G. Knepley Calling sequence of func: 772677b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7727a6e0b375SMatthew G. Knepley 7728a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7729a6e0b375SMatthew G. Knepley . x - The coordinates 773077b739a6SMatthew Knepley . Nc - The number of components 7731a6e0b375SMatthew G. Knepley . u - The output field values 7732a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7733a6e0b375SMatthew G. Knepley 7734a6e0b375SMatthew G. Knepley Level: developer 7735a6e0b375SMatthew G. Knepley 7736db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 7737a6e0b375SMatthew G. Knepley @*/ 77382c53366bSMatthew G. Knepley PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec X) 77392c53366bSMatthew G. Knepley { 77402c53366bSMatthew G. Knepley Vec localX; 77412c53366bSMatthew G. Knepley 77422c53366bSMatthew G. Knepley PetscFunctionBegin; 77432c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 77449566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 77459566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 77469566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 77479566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 77489566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 77492c53366bSMatthew G. Knepley PetscFunctionReturn(0); 77502c53366bSMatthew G. Knepley } 77512c53366bSMatthew G. Knepley 7752a6e0b375SMatthew G. Knepley /*@C 7753a6e0b375SMatthew G. Knepley DMProjectFunctionLabelLocal - This projects the given function into the function space provided, putting the coefficients in a local vector, setting values only for points in the given label. 7754a6e0b375SMatthew G. Knepley 7755a6e0b375SMatthew G. Knepley Not collective 7756a6e0b375SMatthew G. Knepley 7757a6e0b375SMatthew G. Knepley Input Parameters: 7758a6e0b375SMatthew G. Knepley + dm - The DM 7759a6e0b375SMatthew G. Knepley . time - The time 7760a6e0b375SMatthew G. Knepley . label - The DMLabel selecting the portion of the mesh for projection 7761a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 7762a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 7763a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7764a6e0b375SMatthew G. Knepley 7765a6e0b375SMatthew G. Knepley Output Parameter: 7766a6e0b375SMatthew G. Knepley . localX - vector 7767a6e0b375SMatthew G. Knepley 7768a6e0b375SMatthew G. Knepley Calling sequence of func: 776977b739a6SMatthew Knepley $ func(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar u[], void *ctx); 7770a6e0b375SMatthew G. Knepley 7771a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7772a6e0b375SMatthew G. Knepley . x - The coordinates 777377b739a6SMatthew Knepley . Nc - The number of components 7774a6e0b375SMatthew G. Knepley . u - The output field values 7775a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 7776a6e0b375SMatthew G. Knepley 7777a6e0b375SMatthew G. Knepley Level: developer 7778a6e0b375SMatthew G. Knepley 7779db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 7780a6e0b375SMatthew G. Knepley @*/ 77811c531cf8SMatthew G. Knepley PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, InsertMode mode, Vec localX) 77824d6f44ffSToby Isaac { 77834d6f44ffSToby Isaac PetscFunctionBegin; 77844d6f44ffSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7785064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX,VEC_CLASSID,11); 77867a8be351SBarry Smith PetscCheck(dm->ops->projectfunctionlabellocal,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMProjectFunctionLabelLocal",((PetscObject)dm)->type_name); 77879566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfunctionlabellocal) (dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 77884d6f44ffSToby Isaac PetscFunctionReturn(0); 77894d6f44ffSToby Isaac } 77902716604bSToby Isaac 7791a6e0b375SMatthew G. Knepley /*@C 7792a6e0b375SMatthew G. Knepley DMProjectFieldLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector. 7793a6e0b375SMatthew G. Knepley 7794a6e0b375SMatthew G. Knepley Not collective 7795a6e0b375SMatthew G. Knepley 7796a6e0b375SMatthew G. Knepley Input Parameters: 7797a6e0b375SMatthew G. Knepley + dm - The DM 7798a6e0b375SMatthew G. Knepley . time - The time 7799a6e0b375SMatthew G. Knepley . localU - The input field vector 7800a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 7801a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7802a6e0b375SMatthew G. Knepley 7803a6e0b375SMatthew G. Knepley Output Parameter: 7804a6e0b375SMatthew G. Knepley . localX - The output vector 7805a6e0b375SMatthew G. Knepley 7806a6e0b375SMatthew G. Knepley Calling sequence of func: 7807a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 7808a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 7809a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 7810a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 7811a6e0b375SMatthew G. Knepley 7812a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7813a6e0b375SMatthew G. Knepley . Nf - The number of input fields 7814a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 7815a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 7816a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 7817a6e0b375SMatthew G. Knepley . u - The field values at this point in space 7818a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 7819a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 7820a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 7821a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 7822a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 7823a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 7824a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 7825a6e0b375SMatthew G. Knepley . t - The current time 7826a6e0b375SMatthew G. Knepley . x - The coordinates of this point 7827a6e0b375SMatthew G. Knepley . numConstants - The number of constants 7828a6e0b375SMatthew G. Knepley . constants - The value of each constant 7829a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 7830a6e0b375SMatthew G. Knepley 7831a6e0b375SMatthew G. Knepley Note: There are three different DMs that potentially interact in this function. The output DM, dm, specifies the layout of the values calculates by funcs. 7832a6e0b375SMatthew G. Knepley The input DM, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 7833a6e0b375SMatthew G. Knepley a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary DM, attached to the 7834a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 7835a6e0b375SMatthew G. Knepley 7836a6e0b375SMatthew G. Knepley Level: intermediate 7837a6e0b375SMatthew G. Knepley 7838db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 7839a6e0b375SMatthew G. Knepley @*/ 78408c6c5593SMatthew G. Knepley PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, 78418c6c5593SMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 78428c6c5593SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 78438c6c5593SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 7844191494d9SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 78458c6c5593SMatthew G. Knepley InsertMode mode, Vec localX) 78468c6c5593SMatthew G. Knepley { 78478c6c5593SMatthew G. Knepley PetscFunctionBegin; 78488c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 78498c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localU,VEC_CLASSID,3); 78508c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX,VEC_CLASSID,6); 78517a8be351SBarry Smith PetscCheck(dm->ops->projectfieldlocal,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMProjectFieldLocal",((PetscObject)dm)->type_name); 78529566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlocal) (dm, time, localU, funcs, mode, localX)); 78538c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 78548c6c5593SMatthew G. Knepley } 78558c6c5593SMatthew G. Knepley 7856a6e0b375SMatthew G. Knepley /*@C 7857a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 7858a6e0b375SMatthew G. Knepley 7859a6e0b375SMatthew G. Knepley Not collective 7860a6e0b375SMatthew G. Knepley 7861a6e0b375SMatthew G. Knepley Input Parameters: 7862a6e0b375SMatthew G. Knepley + dm - The DM 7863a6e0b375SMatthew G. Knepley . time - The time 7864a6e0b375SMatthew G. Knepley . label - The DMLabel marking the portion of the domain to output 7865a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 7866a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 7867a6e0b375SMatthew G. Knepley . Nc - The number of components to set in the output, or PETSC_DETERMINE for all components 7868a6e0b375SMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 7869a6e0b375SMatthew G. Knepley . localU - The input field vector 7870a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 7871a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 7872a6e0b375SMatthew G. Knepley 7873a6e0b375SMatthew G. Knepley Output Parameter: 7874a6e0b375SMatthew G. Knepley . localX - The output vector 7875a6e0b375SMatthew G. Knepley 7876a6e0b375SMatthew G. Knepley Calling sequence of func: 7877a6e0b375SMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 7878a6e0b375SMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 7879a6e0b375SMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 7880a6e0b375SMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 7881a6e0b375SMatthew G. Knepley 7882a6e0b375SMatthew G. Knepley + dim - The spatial dimension 7883a6e0b375SMatthew G. Knepley . Nf - The number of input fields 7884a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 7885a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 7886a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 7887a6e0b375SMatthew G. Knepley . u - The field values at this point in space 7888a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 7889a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 7890a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 7891a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 7892a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 7893a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 7894a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 7895a6e0b375SMatthew G. Knepley . t - The current time 7896a6e0b375SMatthew G. Knepley . x - The coordinates of this point 7897a6e0b375SMatthew G. Knepley . numConstants - The number of constants 7898a6e0b375SMatthew G. Knepley . constants - The value of each constant 7899a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 7900a6e0b375SMatthew G. Knepley 7901a6e0b375SMatthew G. Knepley Note: There are three different DMs that potentially interact in this function. The output DM, dm, specifies the layout of the values calculates by funcs. 7902a6e0b375SMatthew G. Knepley The input DM, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 7903a6e0b375SMatthew G. Knepley a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary DM, attached to the 7904a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 7905a6e0b375SMatthew G. Knepley 7906a6e0b375SMatthew G. Knepley Level: intermediate 7907a6e0b375SMatthew G. Knepley 7908db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 7909a6e0b375SMatthew G. Knepley @*/ 79101c531cf8SMatthew G. Knepley PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, 79118c6c5593SMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 79128c6c5593SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 79138c6c5593SMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 7914191494d9SMatthew G. Knepley PetscReal, const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 79158c6c5593SMatthew G. Knepley InsertMode mode, Vec localX) 79168c6c5593SMatthew G. Knepley { 79178c6c5593SMatthew G. Knepley PetscFunctionBegin; 79188c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7919064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU,VEC_CLASSID,8); 7920064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX,VEC_CLASSID,11); 79217a8be351SBarry Smith PetscCheck(dm->ops->projectfieldlabellocal,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMProjectFieldLabelLocal",((PetscObject)dm)->type_name); 79229566063dSJacob Faibussowitsch PetscCall((dm->ops->projectfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 79238c6c5593SMatthew G. Knepley PetscFunctionReturn(0); 79248c6c5593SMatthew G. Knepley } 79258c6c5593SMatthew G. Knepley 79262716604bSToby Isaac /*@C 7927ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 7928ece3a9fcSMatthew G. Knepley 7929ece3a9fcSMatthew G. Knepley Not collective 7930ece3a9fcSMatthew G. Knepley 7931ece3a9fcSMatthew G. Knepley Input Parameters: 7932ece3a9fcSMatthew G. Knepley + dm - The DM 7933ece3a9fcSMatthew G. Knepley . time - The time 7934ece3a9fcSMatthew G. Knepley . label - The DMLabel marking the portion of the domain boundary to output 7935ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 7936ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 7937ece3a9fcSMatthew G. Knepley . Nc - The number of components to set in the output, or PETSC_DETERMINE for all components 7938ece3a9fcSMatthew G. Knepley . comps - The components to set in the output, or NULL for all components 7939ece3a9fcSMatthew G. Knepley . localU - The input field vector 7940ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 7941ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 7942ece3a9fcSMatthew G. Knepley 7943ece3a9fcSMatthew G. Knepley Output Parameter: 7944ece3a9fcSMatthew G. Knepley . localX - The output vector 7945ece3a9fcSMatthew G. Knepley 7946ece3a9fcSMatthew G. Knepley Calling sequence of func: 7947ece3a9fcSMatthew G. Knepley $ func(PetscInt dim, PetscInt Nf, PetscInt NfAux, 7948ece3a9fcSMatthew G. Knepley $ const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 7949ece3a9fcSMatthew G. Knepley $ const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 7950ece3a9fcSMatthew G. Knepley $ PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]); 7951ece3a9fcSMatthew G. Knepley 7952ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 7953ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 7954ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 7955ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 7956ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 7957ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 7958ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 7959ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 7960ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 7961ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 7962ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 7963ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 7964ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 7965ece3a9fcSMatthew G. Knepley . t - The current time 7966ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 7967ece3a9fcSMatthew G. Knepley . n - The face normal 7968ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 7969ece3a9fcSMatthew G. Knepley . constants - The value of each constant 7970ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 7971ece3a9fcSMatthew G. Knepley 7972ece3a9fcSMatthew G. Knepley Note: 7973ece3a9fcSMatthew G. Knepley There are three different DMs that potentially interact in this function. The output DM, dm, specifies the layout of the values calculates by funcs. 7974ece3a9fcSMatthew G. Knepley The input DM, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 7975ece3a9fcSMatthew G. Knepley a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary DM, attached to the 7976ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 7977ece3a9fcSMatthew G. Knepley 7978ece3a9fcSMatthew G. Knepley Level: intermediate 7979ece3a9fcSMatthew G. Knepley 7980db781477SPatrick Sanan .seealso: `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 7981ece3a9fcSMatthew G. Knepley @*/ 7982ece3a9fcSMatthew G. Knepley PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, 7983ece3a9fcSMatthew G. Knepley void (**funcs)(PetscInt, PetscInt, PetscInt, 7984ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 7985ece3a9fcSMatthew G. Knepley const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 7986ece3a9fcSMatthew G. Knepley PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]), 7987ece3a9fcSMatthew G. Knepley InsertMode mode, Vec localX) 7988ece3a9fcSMatthew G. Knepley { 7989ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 7990ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm,DM_CLASSID,1); 7991064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU,VEC_CLASSID,8); 7992064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX,VEC_CLASSID,11); 79937a8be351SBarry Smith PetscCheck(dm->ops->projectbdfieldlabellocal,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMProjectBdFieldLabelLocal",((PetscObject)dm)->type_name); 79949566063dSJacob Faibussowitsch PetscCall((dm->ops->projectbdfieldlabellocal)(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 7995ece3a9fcSMatthew G. Knepley PetscFunctionReturn(0); 7996ece3a9fcSMatthew G. Knepley } 7997ece3a9fcSMatthew G. Knepley 7998ece3a9fcSMatthew G. Knepley /*@C 79992716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 80002716604bSToby Isaac 80012716604bSToby Isaac Input Parameters: 80022716604bSToby Isaac + dm - The DM 80030709b2feSToby Isaac . time - The time 80042716604bSToby Isaac . funcs - The functions to evaluate for each field component 80052716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8006574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 80072716604bSToby Isaac 80082716604bSToby Isaac Output Parameter: 80092716604bSToby Isaac . diff - The diff ||u - u_h||_2 80102716604bSToby Isaac 80112716604bSToby Isaac Level: developer 80122716604bSToby Isaac 8013db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 80142716604bSToby Isaac @*/ 80150709b2feSToby Isaac PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 80162716604bSToby Isaac { 80172716604bSToby Isaac PetscFunctionBegin; 80182716604bSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 8019b698f381SToby Isaac PetscValidHeaderSpecific(X,VEC_CLASSID,5); 80207a8be351SBarry Smith PetscCheck(dm->ops->computel2diff,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMComputeL2Diff",((PetscObject)dm)->type_name); 80219566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2diff)(dm,time,funcs,ctxs,X,diff)); 80222716604bSToby Isaac PetscFunctionReturn(0); 80232716604bSToby Isaac } 8024b698f381SToby Isaac 8025b698f381SToby Isaac /*@C 8026b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8027b698f381SToby Isaac 8028d083f849SBarry Smith Collective on dm 8029d083f849SBarry Smith 8030b698f381SToby Isaac Input Parameters: 8031b698f381SToby Isaac + dm - The DM 8032b698f381SToby Isaac , time - The time 8033b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8034b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8035574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8036b698f381SToby Isaac - n - The vector to project along 8037b698f381SToby Isaac 8038b698f381SToby Isaac Output Parameter: 8039b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8040b698f381SToby Isaac 8041b698f381SToby Isaac Level: developer 8042b698f381SToby Isaac 8043db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2Diff()` 8044b698f381SToby Isaac @*/ 8045b698f381SToby Isaac PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8046b698f381SToby Isaac { 8047b698f381SToby Isaac PetscFunctionBegin; 8048b698f381SToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 8049b698f381SToby Isaac PetscValidHeaderSpecific(X,VEC_CLASSID,5); 80507a8be351SBarry Smith PetscCheck(dm->ops->computel2gradientdiff,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMComputeL2GradientDiff",((PetscObject)dm)->type_name); 80519566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2gradientdiff)(dm,time,funcs,ctxs,X,n,diff)); 8052b698f381SToby Isaac PetscFunctionReturn(0); 8053b698f381SToby Isaac } 8054b698f381SToby Isaac 80552a16baeaSToby Isaac /*@C 80562a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 80572a16baeaSToby Isaac 8058d083f849SBarry Smith Collective on dm 8059d083f849SBarry Smith 80602a16baeaSToby Isaac Input Parameters: 80612a16baeaSToby Isaac + dm - The DM 80622a16baeaSToby Isaac . time - The time 80632a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 80642a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8065574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 80662a16baeaSToby Isaac 80672a16baeaSToby Isaac Output Parameter: 80682a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 80692a16baeaSToby Isaac 80702a16baeaSToby Isaac Level: developer 80712a16baeaSToby Isaac 8072db781477SPatrick Sanan .seealso: `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 80732a16baeaSToby Isaac @*/ 80741189c1efSToby Isaac PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 80752a16baeaSToby Isaac { 80762a16baeaSToby Isaac PetscFunctionBegin; 80772a16baeaSToby Isaac PetscValidHeaderSpecific(dm,DM_CLASSID,1); 80782a16baeaSToby Isaac PetscValidHeaderSpecific(X,VEC_CLASSID,5); 80797a8be351SBarry Smith PetscCheck(dm->ops->computel2fielddiff,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMComputeL2FieldDiff",((PetscObject)dm)->type_name); 80809566063dSJacob Faibussowitsch PetscCall((dm->ops->computel2fielddiff)(dm,time,funcs,ctxs,X,diff)); 80812a16baeaSToby Isaac PetscFunctionReturn(0); 80822a16baeaSToby Isaac } 80832a16baeaSToby Isaac 8084df0b854cSToby Isaac /*@C 8085502a2867SDave May DMGetNeighbors - Gets an array containing the MPI rank of all the processes neighbors 8086502a2867SDave May 8087502a2867SDave May Not Collective 8088502a2867SDave May 8089502a2867SDave May Input Parameter: 8090502a2867SDave May . dm - The DM 8091502a2867SDave May 80920a19bb7dSprj- Output Parameters: 80930a19bb7dSprj- + nranks - the number of neighbours 80940a19bb7dSprj- - ranks - the neighbors ranks 8095502a2867SDave May 8096502a2867SDave May Notes: 8097502a2867SDave May Do not free the array, it is freed when the DM is destroyed. 8098502a2867SDave May 8099502a2867SDave May Level: beginner 8100502a2867SDave May 8101db781477SPatrick Sanan .seealso: `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8102502a2867SDave May @*/ 8103502a2867SDave May PetscErrorCode DMGetNeighbors(DM dm,PetscInt *nranks,const PetscMPIInt *ranks[]) 8104502a2867SDave May { 8105502a2867SDave May PetscFunctionBegin; 8106502a2867SDave May PetscValidHeaderSpecific(dm,DM_CLASSID,1); 81077a8be351SBarry Smith PetscCheck(dm->ops->getneighbors,PetscObjectComm((PetscObject)dm),PETSC_ERR_SUP,"DM type %s does not implement DMGetNeighbors",((PetscObject)dm)->type_name); 81089566063dSJacob Faibussowitsch PetscCall((dm->ops->getneighbors)(dm,nranks,ranks)); 8109502a2867SDave May PetscFunctionReturn(0); 8110502a2867SDave May } 8111502a2867SDave May 8112531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8113531c7667SBarry Smith 8114531c7667SBarry Smith /* 8115531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 8116531c7667SBarry Smith This has be a different function because it requires DM which is not defined in the Mat library 8117531c7667SBarry Smith */ 8118531c7667SBarry Smith PetscErrorCode MatFDColoringApply_AIJDM(Mat J,MatFDColoring coloring,Vec x1,void *sctx) 8119531c7667SBarry Smith { 8120531c7667SBarry Smith PetscFunctionBegin; 8121531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8122531c7667SBarry Smith Vec x1local; 8123531c7667SBarry Smith DM dm; 81249566063dSJacob Faibussowitsch PetscCall(MatGetDM(J,&dm)); 81257a8be351SBarry Smith PetscCheck(dm,PetscObjectComm((PetscObject)J),PETSC_ERR_ARG_INCOMP,"IS_COLORING_LOCAL requires a DM"); 81269566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm,&x1local)); 81279566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm,x1,INSERT_VALUES,x1local)); 81289566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm,x1,INSERT_VALUES,x1local)); 8129531c7667SBarry Smith x1 = x1local; 8130531c7667SBarry Smith } 81319566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J,coloring,x1,sctx)); 8132531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8133531c7667SBarry Smith DM dm; 81349566063dSJacob Faibussowitsch PetscCall(MatGetDM(J,&dm)); 81359566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm,&x1)); 8136531c7667SBarry Smith } 8137531c7667SBarry Smith PetscFunctionReturn(0); 8138531c7667SBarry Smith } 8139531c7667SBarry Smith 8140531c7667SBarry Smith /*@ 8141531c7667SBarry Smith MatFDColoringUseDM - allows a MatFDColoring object to use the DM associated with the matrix to use a IS_COLORING_LOCAL coloring 8142531c7667SBarry Smith 8143531c7667SBarry Smith Input Parameter: 8144531c7667SBarry Smith . coloring - the MatFDColoring object 8145531c7667SBarry Smith 814695452b02SPatrick Sanan Developer Notes: 814795452b02SPatrick Sanan this routine exists because the PETSc Mat library does not know about the DM objects 8148531c7667SBarry Smith 81491b266c99SBarry Smith Level: advanced 81501b266c99SBarry Smith 8151db781477SPatrick Sanan .seealso: `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8152531c7667SBarry Smith @*/ 8153531c7667SBarry Smith PetscErrorCode MatFDColoringUseDM(Mat coloring,MatFDColoring fdcoloring) 8154531c7667SBarry Smith { 8155531c7667SBarry Smith PetscFunctionBegin; 8156531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 8157531c7667SBarry Smith PetscFunctionReturn(0); 8158531c7667SBarry Smith } 81598320bc6fSPatrick Sanan 81608320bc6fSPatrick Sanan /*@ 81618320bc6fSPatrick Sanan DMGetCompatibility - determine if two DMs are compatible 81628320bc6fSPatrick Sanan 81638320bc6fSPatrick Sanan Collective 81648320bc6fSPatrick Sanan 81658320bc6fSPatrick Sanan Input Parameters: 8166a5bc1bf3SBarry Smith + dm1 - the first DM 81678320bc6fSPatrick Sanan - dm2 - the second DM 81688320bc6fSPatrick Sanan 81698320bc6fSPatrick Sanan Output Parameters: 81708320bc6fSPatrick Sanan + compatible - whether or not the two DMs are compatible 81718320bc6fSPatrick Sanan - set - whether or not the compatible value was set 81728320bc6fSPatrick Sanan 81738320bc6fSPatrick Sanan Notes: 81748320bc6fSPatrick Sanan Two DMs are deemed compatible if they represent the same parallel decomposition 81753d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 81768320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 81773d862458SPatrick Sanan Loosely speaking, compatible DMs represent the same domain and parallel 81783d862458SPatrick Sanan decomposition, but hold different data. 81798320bc6fSPatrick Sanan 81808320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 81818320bc6fSPatrick Sanan over a pair of vectors obtained from different DMs. 81828320bc6fSPatrick Sanan 81838320bc6fSPatrick Sanan For example, two DMDA objects are compatible if they have the same local 81848320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 81858320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 81868320bc6fSPatrick Sanan either DM in bounds for a loop over vectors derived from either DM. 81878320bc6fSPatrick Sanan 81888320bc6fSPatrick Sanan Consider the operation of summing data living on a 2-dof DMDA to data living 81898320bc6fSPatrick Sanan on a 1-dof DMDA, which should be compatible, as in the following snippet. 81908320bc6fSPatrick Sanan .vb 81918320bc6fSPatrick Sanan ... 81929566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 81938320bc6fSPatrick Sanan if (set && compatible) { 81949566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 81959566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 81969566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 81978320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 81988320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 81998320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 82008320bc6fSPatrick Sanan } 82018320bc6fSPatrick Sanan } 82029566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 82039566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 82048320bc6fSPatrick Sanan } else { 82058320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 82068320bc6fSPatrick Sanan } 82078320bc6fSPatrick Sanan ... 82088320bc6fSPatrick Sanan .ve 82098320bc6fSPatrick Sanan 82108320bc6fSPatrick Sanan Checking compatibility might be expensive for a given implementation of DM, 82118320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 82128320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 82138320bc6fSPatrick Sanan always check the "set" output parameter. 82148320bc6fSPatrick Sanan 82158320bc6fSPatrick Sanan A DM is always compatible with itself. 82168320bc6fSPatrick Sanan 82178320bc6fSPatrick Sanan In the current implementation, DMs which live on "unequal" communicators 82188320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 82198320bc6fSPatrick Sanan incompatible. 82208320bc6fSPatrick Sanan 82218320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 82228320bc6fSPatrick Sanan is required on each rank. However, in DM implementations which store all this 82238320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 82248320bc6fSPatrick Sanan 82258320bc6fSPatrick Sanan Developer Notes: 82263d862458SPatrick Sanan Compatibility is assumed to be a symmetric concept; DM A is compatible with DM B 82273d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8228a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 82298320bc6fSPatrick Sanan compatibility. It is left to DM implementers to ensure that symmetry is 82308320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 82313d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 82323d862458SPatrick Sanan of other DM types and let *set = PETSC_FALSE if found. 82338320bc6fSPatrick Sanan 82348320bc6fSPatrick Sanan Level: advanced 82358320bc6fSPatrick Sanan 8236db781477SPatrick Sanan .seealso: `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 82378320bc6fSPatrick Sanan @*/ 82388320bc6fSPatrick Sanan 8239a5bc1bf3SBarry Smith PetscErrorCode DMGetCompatibility(DM dm1,DM dm2,PetscBool *compatible,PetscBool *set) 82408320bc6fSPatrick Sanan { 82418320bc6fSPatrick Sanan PetscMPIInt compareResult; 82428320bc6fSPatrick Sanan DMType type,type2; 82438320bc6fSPatrick Sanan PetscBool sameType; 82448320bc6fSPatrick Sanan 82458320bc6fSPatrick Sanan PetscFunctionBegin; 8246a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1,DM_CLASSID,1); 82478320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2,DM_CLASSID,2); 82488320bc6fSPatrick Sanan 82498320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8250a5bc1bf3SBarry Smith if (dm1 == dm2) { 82518320bc6fSPatrick Sanan *set = PETSC_TRUE; 82528320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 82538320bc6fSPatrick Sanan PetscFunctionReturn(0); 82548320bc6fSPatrick Sanan } 82558320bc6fSPatrick Sanan 82568320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 82578320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 82588320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 82598320bc6fSPatrick Sanan determined by the implementation-specific logic */ 82609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1),PetscObjectComm((PetscObject)dm2),&compareResult)); 82618320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 82628320bc6fSPatrick Sanan *set = PETSC_TRUE; 82638320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 82648320bc6fSPatrick Sanan PetscFunctionReturn(0); 82658320bc6fSPatrick Sanan } 82668320bc6fSPatrick Sanan 82678320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8268a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 82699566063dSJacob Faibussowitsch PetscCall((*dm1->ops->getcompatibility)(dm1,dm2,compatible,set)); 8270b9d85ea2SLisandro Dalcin if (*set) PetscFunctionReturn(0); 82718320bc6fSPatrick Sanan } 82728320bc6fSPatrick Sanan 8273a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 82748320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 82759566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1,&type)); 82769566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2,&type2)); 82779566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type,type2,&sameType)); 82788320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 82799566063dSJacob Faibussowitsch PetscCall((*dm2->ops->getcompatibility)(dm2,dm1,compatible,set)); /* Note argument order */ 82808320bc6fSPatrick Sanan } else { 82818320bc6fSPatrick Sanan *set = PETSC_FALSE; 82828320bc6fSPatrick Sanan } 82838320bc6fSPatrick Sanan PetscFunctionReturn(0); 82848320bc6fSPatrick Sanan } 8285c0f0dcc3SMatthew G. Knepley 8286c0f0dcc3SMatthew G. Knepley /*@C 8287c0f0dcc3SMatthew G. Knepley DMMonitorSet - Sets an ADDITIONAL function that is to be used after a solve to monitor discretization performance. 8288c0f0dcc3SMatthew G. Knepley 8289c0f0dcc3SMatthew G. Knepley Logically Collective on DM 8290c0f0dcc3SMatthew G. Knepley 8291c0f0dcc3SMatthew G. Knepley Input Parameters: 8292c0f0dcc3SMatthew G. Knepley + DM - the DM 8293c0f0dcc3SMatthew G. Knepley . f - the monitor function 8294c0f0dcc3SMatthew G. Knepley . mctx - [optional] user-defined context for private data for the monitor routine (use NULL if no context is desired) 8295c0f0dcc3SMatthew G. Knepley - monitordestroy - [optional] routine that frees monitor context (may be NULL) 8296c0f0dcc3SMatthew G. Knepley 8297c0f0dcc3SMatthew G. Knepley Options Database Keys: 8298c0f0dcc3SMatthew G. Knepley - -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to DMMonitorSet(), but 8299c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8300c0f0dcc3SMatthew G. Knepley 8301c0f0dcc3SMatthew G. Knepley Notes: 8302c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8303c0f0dcc3SMatthew G. Knepley DMMonitorSet() multiple times; all will be called in the 8304c0f0dcc3SMatthew G. Knepley order in which they were set. 8305c0f0dcc3SMatthew G. Knepley 8306c0f0dcc3SMatthew G. Knepley Fortran Notes: 8307c0f0dcc3SMatthew G. Knepley Only a single monitor function can be set for each DM object 8308c0f0dcc3SMatthew G. Knepley 8309c0f0dcc3SMatthew G. Knepley Level: intermediate 8310c0f0dcc3SMatthew G. Knepley 8311db781477SPatrick Sanan .seealso: `DMMonitorCancel()` 8312c0f0dcc3SMatthew G. Knepley @*/ 8313c0f0dcc3SMatthew G. Knepley PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void**)) 8314c0f0dcc3SMatthew G. Knepley { 8315c0f0dcc3SMatthew G. Knepley PetscInt m; 8316c0f0dcc3SMatthew G. Knepley 8317c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8318c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8319c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8320c0f0dcc3SMatthew G. Knepley PetscBool identical; 8321c0f0dcc3SMatthew G. Knepley 83229566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode (*)(void)) f, mctx, monitordestroy, (PetscErrorCode (*)(void)) dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 8323c0f0dcc3SMatthew G. Knepley if (identical) PetscFunctionReturn(0); 8324c0f0dcc3SMatthew G. Knepley } 83257a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS,PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8326c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8327c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8328c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *) mctx; 8329c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8330c0f0dcc3SMatthew G. Knepley } 8331c0f0dcc3SMatthew G. Knepley 8332c0f0dcc3SMatthew G. Knepley /*@ 8333c0f0dcc3SMatthew G. Knepley DMMonitorCancel - Clears all the monitor functions for a DM object. 8334c0f0dcc3SMatthew G. Knepley 8335c0f0dcc3SMatthew G. Knepley Logically Collective on DM 8336c0f0dcc3SMatthew G. Knepley 8337c0f0dcc3SMatthew G. Knepley Input Parameter: 8338c0f0dcc3SMatthew G. Knepley . dm - the DM 8339c0f0dcc3SMatthew G. Knepley 8340c0f0dcc3SMatthew G. Knepley Options Database Key: 8341c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8342c0f0dcc3SMatthew G. Knepley into a code by calls to DMonitorSet(), but does not cancel those 8343c0f0dcc3SMatthew G. Knepley set via the options database 8344c0f0dcc3SMatthew G. Knepley 8345c0f0dcc3SMatthew G. Knepley Notes: 8346c0f0dcc3SMatthew G. Knepley There is no way to clear one specific monitor from a DM object. 8347c0f0dcc3SMatthew G. Knepley 8348c0f0dcc3SMatthew G. Knepley Level: intermediate 8349c0f0dcc3SMatthew G. Knepley 8350db781477SPatrick Sanan .seealso: `DMMonitorSet()` 8351c0f0dcc3SMatthew G. Knepley @*/ 8352c0f0dcc3SMatthew G. Knepley PetscErrorCode DMMonitorCancel(DM dm) 8353c0f0dcc3SMatthew G. Knepley { 8354c0f0dcc3SMatthew G. Knepley PetscInt m; 8355c0f0dcc3SMatthew G. Knepley 8356c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8357c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8358c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 83599566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8360c0f0dcc3SMatthew G. Knepley } 8361c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 8362c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8363c0f0dcc3SMatthew G. Knepley } 8364c0f0dcc3SMatthew G. Knepley 8365c0f0dcc3SMatthew G. Knepley /*@C 8366c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8367c0f0dcc3SMatthew G. Knepley 8368c0f0dcc3SMatthew G. Knepley Collective on DM 8369c0f0dcc3SMatthew G. Knepley 8370c0f0dcc3SMatthew G. Knepley Input Parameters: 8371c0f0dcc3SMatthew G. Knepley + dm - DM object you wish to monitor 8372c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8373c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8374c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8375c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8376c0f0dcc3SMatthew G. Knepley - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the DM or PetscViewer objects 8377c0f0dcc3SMatthew G. Knepley 8378c0f0dcc3SMatthew G. Knepley Output Parameter: 8379c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8380c0f0dcc3SMatthew G. Knepley 8381c0f0dcc3SMatthew G. Knepley Level: developer 8382c0f0dcc3SMatthew G. Knepley 8383db781477SPatrick Sanan .seealso: `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8384db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 8385db781477SPatrick Sanan `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, `PetscOptionsBool()`, 8386db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8387c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8388db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8389db781477SPatrick Sanan `PetscOptionsFList()`, `PetscOptionsEList()` 8390c0f0dcc3SMatthew G. Knepley @*/ 8391c0f0dcc3SMatthew G. Knepley PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8392c0f0dcc3SMatthew G. Knepley { 8393c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8394c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8395c0f0dcc3SMatthew G. Knepley 8396c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8397c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 83989566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject) dm), ((PetscObject) dm)->options, ((PetscObject) dm)->prefix, name, &viewer, &format, flg)); 8399c0f0dcc3SMatthew G. Knepley if (*flg) { 8400c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8401c0f0dcc3SMatthew G. Knepley 84029566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 84039566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject) viewer)); 84049566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 84059566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm,(PetscErrorCode (*)(DM, void *)) monitor, vf, (PetscErrorCode (*)(void **)) PetscViewerAndFormatDestroy)); 8406c0f0dcc3SMatthew G. Knepley } 8407c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8408c0f0dcc3SMatthew G. Knepley } 8409c0f0dcc3SMatthew G. Knepley 8410c0f0dcc3SMatthew G. Knepley /*@ 8411c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8412c0f0dcc3SMatthew G. Knepley 8413c0f0dcc3SMatthew G. Knepley Collective on DM 8414c0f0dcc3SMatthew G. Knepley 8415c0f0dcc3SMatthew G. Knepley Input Parameters: 8416c0f0dcc3SMatthew G. Knepley . dm - The DM 8417c0f0dcc3SMatthew G. Knepley 8418c0f0dcc3SMatthew G. Knepley Level: developer 8419c0f0dcc3SMatthew G. Knepley 8420db781477SPatrick Sanan .seealso: `DMMonitorSet()` 8421c0f0dcc3SMatthew G. Knepley @*/ 8422c0f0dcc3SMatthew G. Knepley PetscErrorCode DMMonitor(DM dm) 8423c0f0dcc3SMatthew G. Knepley { 8424c0f0dcc3SMatthew G. Knepley PetscInt m; 8425c0f0dcc3SMatthew G. Knepley 8426c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8427c0f0dcc3SMatthew G. Knepley if (!dm) PetscFunctionReturn(0); 8428c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8429c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 84309566063dSJacob Faibussowitsch PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 8431c0f0dcc3SMatthew G. Knepley } 8432c0f0dcc3SMatthew G. Knepley PetscFunctionReturn(0); 8433c0f0dcc3SMatthew G. Knepley } 84342e4af2aeSMatthew G. Knepley 84352e4af2aeSMatthew G. Knepley /*@ 84362e4af2aeSMatthew G. Knepley DMComputeError - Computes the error assuming the user has given exact solution functions 84372e4af2aeSMatthew G. Knepley 84382e4af2aeSMatthew G. Knepley Collective on DM 84392e4af2aeSMatthew G. Knepley 84402e4af2aeSMatthew G. Knepley Input Parameters: 84412e4af2aeSMatthew G. Knepley + dm - The DM 84426b867d5aSJose E. Roman - sol - The solution vector 84432e4af2aeSMatthew G. Knepley 84446b867d5aSJose E. Roman Input/Output Parameter: 84456b867d5aSJose E. Roman . errors - An array of length Nf, the number of fields, or NULL for no output; on output 84466b867d5aSJose E. Roman contains the error in each field 84476b867d5aSJose E. Roman 84486b867d5aSJose E. Roman Output Parameter: 84496b867d5aSJose E. Roman . errorVec - A vector to hold the cellwise error (may be NULL) 84502e4af2aeSMatthew G. Knepley 84512e4af2aeSMatthew G. Knepley Note: The exact solutions come from the PetscDS object, and the time comes from DMGetOutputSequenceNumber(). 84522e4af2aeSMatthew G. Knepley 84532e4af2aeSMatthew G. Knepley Level: developer 84542e4af2aeSMatthew G. Knepley 8455db781477SPatrick Sanan .seealso: `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 84562e4af2aeSMatthew G. Knepley @*/ 84572e4af2aeSMatthew G. Knepley PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 84582e4af2aeSMatthew G. Knepley { 84592e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 84602e4af2aeSMatthew G. Knepley void **ctxs; 84612e4af2aeSMatthew G. Knepley PetscReal time; 84622e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 84632e4af2aeSMatthew G. Knepley 84642e4af2aeSMatthew G. Knepley PetscFunctionBegin; 84659566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 84669566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 84679566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 84682e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 84692e4af2aeSMatthew G. Knepley PetscDS ds; 84702e4af2aeSMatthew G. Knepley DMLabel label; 84712e4af2aeSMatthew G. Knepley IS fieldIS; 84722e4af2aeSMatthew G. Knepley const PetscInt *fields; 84732e4af2aeSMatthew G. Knepley PetscInt dsNf; 84742e4af2aeSMatthew G. Knepley 84759566063dSJacob Faibussowitsch PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds)); 84769566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 84779566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 84782e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 84792e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 84809566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 84812e4af2aeSMatthew G. Knepley } 84829566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 84832e4af2aeSMatthew G. Knepley } 84842e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 848563a3b9bcSJacob Faibussowitsch PetscCheck(exactSol[f],PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 84862e4af2aeSMatthew G. Knepley } 84879566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 84889566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 84892e4af2aeSMatthew G. Knepley if (errorVec) { 84902e4af2aeSMatthew G. Knepley DM edm; 84912e4af2aeSMatthew G. Knepley DMPolytopeType ct; 84922e4af2aeSMatthew G. Knepley PetscBool simplex; 84932e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 84942e4af2aeSMatthew G. Knepley 84959566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 84969566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 84979566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 84989566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 84992e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct)+1 ? PETSC_TRUE : PETSC_FALSE; 85009566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 85012e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 85022e4af2aeSMatthew G. Knepley PetscFE fe, efe; 85032e4af2aeSMatthew G. Knepley PetscQuadrature q; 85042e4af2aeSMatthew G. Knepley const char *name; 85052e4af2aeSMatthew G. Knepley 85069566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *) &fe)); 85079566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 85089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject) fe, &name)); 85099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) efe, name)); 85109566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 85119566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 85129566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject) efe)); 85139566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 85142e4af2aeSMatthew G. Knepley } 85159566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 85162e4af2aeSMatthew G. Knepley 85179566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 85189566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject) *errorVec, "Error")); 85199566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 85209566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 85212e4af2aeSMatthew G. Knepley } 85229566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 85232e4af2aeSMatthew G. Knepley PetscFunctionReturn(0); 85242e4af2aeSMatthew G. Knepley } 85259a2a23afSMatthew G. Knepley 85269a2a23afSMatthew G. Knepley /*@ 85279a2a23afSMatthew G. Knepley DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this DM 85289a2a23afSMatthew G. Knepley 85299a2a23afSMatthew G. Knepley Not collective 85309a2a23afSMatthew G. Knepley 85319a2a23afSMatthew G. Knepley Input Parameter: 85329a2a23afSMatthew G. Knepley . dm - The DM 85339a2a23afSMatthew G. Knepley 85349a2a23afSMatthew G. Knepley Output Parameter: 8535a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 85369a2a23afSMatthew G. Knepley 85379a2a23afSMatthew G. Knepley Level: advanced 85389a2a23afSMatthew G. Knepley 8539db781477SPatrick Sanan .seealso: `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 85409a2a23afSMatthew G. Knepley @*/ 85419a2a23afSMatthew G. Knepley PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 85429a2a23afSMatthew G. Knepley { 85439a2a23afSMatthew G. Knepley PetscFunctionBegin; 85449a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85459566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 85469a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 85479a2a23afSMatthew G. Knepley } 85489a2a23afSMatthew G. Knepley 85499a2a23afSMatthew G. Knepley /*@ 8550ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 85519a2a23afSMatthew G. Knepley 85529a2a23afSMatthew G. Knepley Not collective 85539a2a23afSMatthew G. Knepley 85549a2a23afSMatthew G. Knepley Input Parameters: 85559a2a23afSMatthew G. Knepley + dm - The DM 85569a2a23afSMatthew G. Knepley . label - The DMLabel 8557ac17215fSMatthew G. Knepley . value - The label value indicating the region 8558ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 85599a2a23afSMatthew G. Knepley 85609a2a23afSMatthew G. Knepley Output Parameter: 85619a2a23afSMatthew G. Knepley . aux - The Vec holding auxiliary field data 85629a2a23afSMatthew G. Knepley 8563ac17215fSMatthew G. Knepley Note: If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 856404c51a94SMatthew G. Knepley 85659a2a23afSMatthew G. Knepley Level: advanced 85669a2a23afSMatthew G. Knepley 8567db781477SPatrick Sanan .seealso: `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()` 85689a2a23afSMatthew G. Knepley @*/ 8569ac17215fSMatthew G. Knepley PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 85709a2a23afSMatthew G. Knepley { 8571ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 857204c51a94SMatthew G. Knepley PetscBool has; 85739a2a23afSMatthew G. Knepley 85749a2a23afSMatthew G. Knepley PetscFunctionBegin; 85759a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85769a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 85779a2a23afSMatthew G. Knepley key.label = label; 85789a2a23afSMatthew G. Knepley key.value = value; 8579ac17215fSMatthew G. Knepley key.part = part; 85809566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 85819566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 85829566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 85839a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 85849a2a23afSMatthew G. Knepley } 85859a2a23afSMatthew G. Knepley 85869a2a23afSMatthew G. Knepley /*@ 8587ac17215fSMatthew G. Knepley DMSetAuxiliaryVec - Set the auxiliary vector for region specified by the given label and value, and equation part 85889a2a23afSMatthew G. Knepley 85899a2a23afSMatthew G. Knepley Not collective 85909a2a23afSMatthew G. Knepley 85919a2a23afSMatthew G. Knepley Input Parameters: 85929a2a23afSMatthew G. Knepley + dm - The DM 85939a2a23afSMatthew G. Knepley . label - The DMLabel 85949a2a23afSMatthew G. Knepley . value - The label value indicating the region 8595ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 85969a2a23afSMatthew G. Knepley - aux - The Vec holding auxiliary field data 85979a2a23afSMatthew G. Knepley 85989a2a23afSMatthew G. Knepley Level: advanced 85999a2a23afSMatthew G. Knepley 8600db781477SPatrick Sanan .seealso: `DMGetAuxiliaryVec()` 86019a2a23afSMatthew G. Knepley @*/ 8602ac17215fSMatthew G. Knepley PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 86039a2a23afSMatthew G. Knepley { 86049a2a23afSMatthew G. Knepley Vec old; 86059a2a23afSMatthew G. Knepley PetscHashAuxKey key; 86069a2a23afSMatthew G. Knepley 86079a2a23afSMatthew G. Knepley PetscFunctionBegin; 86089a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86099a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 86109a2a23afSMatthew G. Knepley key.label = label; 86119a2a23afSMatthew G. Knepley key.value = value; 8612ac17215fSMatthew G. Knepley key.part = part; 86139566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 86149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject) aux)); 86159566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject) old)); 86169566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 86179566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 86189a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 86199a2a23afSMatthew G. Knepley } 86209a2a23afSMatthew G. Knepley 86219a2a23afSMatthew G. Knepley /*@C 8622ac17215fSMatthew G. Knepley DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this DM 86239a2a23afSMatthew G. Knepley 86249a2a23afSMatthew G. Knepley Not collective 86259a2a23afSMatthew G. Knepley 86269a2a23afSMatthew G. Knepley Input Parameter: 86279a2a23afSMatthew G. Knepley . dm - The DM 86289a2a23afSMatthew G. Knepley 86299a2a23afSMatthew G. Knepley Output Parameters: 86309a2a23afSMatthew G. Knepley + labels - The DMLabels for each Vec 8631ac17215fSMatthew G. Knepley . values - The label values for each Vec 8632ac17215fSMatthew G. Knepley - parts - The equation parts for each Vec 86339a2a23afSMatthew G. Knepley 86349a2a23afSMatthew G. Knepley Note: The arrays passed in must be at least as large as DMGetNumAuxiliaryVec(). 86359a2a23afSMatthew G. Knepley 86369a2a23afSMatthew G. Knepley Level: advanced 86379a2a23afSMatthew G. Knepley 8638db781477SPatrick Sanan .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 86399a2a23afSMatthew G. Knepley @*/ 8640ac17215fSMatthew G. Knepley PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 86419a2a23afSMatthew G. Knepley { 86429a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 86439a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 86449a2a23afSMatthew G. Knepley 86459a2a23afSMatthew G. Knepley PetscFunctionBegin; 86469a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86479a2a23afSMatthew G. Knepley PetscValidPointer(labels, 2); 8648dadcf809SJacob Faibussowitsch PetscValidIntPointer(values, 3); 8649dadcf809SJacob Faibussowitsch PetscValidIntPointer(parts, 4); 86509566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 86519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 86529566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 8653ac17215fSMatthew G. Knepley for (i = 0; i < n; ++i) {labels[i] = keys[i].label; values[i] = keys[i].value; parts[i] = keys[i].part;} 86549566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 86559a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 86569a2a23afSMatthew G. Knepley } 86579a2a23afSMatthew G. Knepley 86589a2a23afSMatthew G. Knepley /*@ 86599a2a23afSMatthew G. Knepley DMCopyAuxiliaryVec - Copy the auxiliary data to a new DM 86609a2a23afSMatthew G. Knepley 86619a2a23afSMatthew G. Knepley Not collective 86629a2a23afSMatthew G. Knepley 86639a2a23afSMatthew G. Knepley Input Parameter: 86649a2a23afSMatthew G. Knepley . dm - The DM 86659a2a23afSMatthew G. Knepley 86669a2a23afSMatthew G. Knepley Output Parameter: 86679a2a23afSMatthew G. Knepley . dmNew - The new DM, now with the same auxiliary data 86689a2a23afSMatthew G. Knepley 86699a2a23afSMatthew G. Knepley Level: advanced 86709a2a23afSMatthew G. Knepley 8671db781477SPatrick Sanan .seealso: `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 86729a2a23afSMatthew G. Knepley @*/ 86739a2a23afSMatthew G. Knepley PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 86749a2a23afSMatthew G. Knepley { 86759a2a23afSMatthew G. Knepley PetscFunctionBegin; 86769a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 86779566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 86789566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 86799a2a23afSMatthew G. Knepley PetscFunctionReturn(0); 86809a2a23afSMatthew G. Knepley } 8681b5a892a1SMatthew G. Knepley 8682b5a892a1SMatthew G. Knepley /*@C 8683b5a892a1SMatthew G. Knepley DMPolytopeMatchOrientation - Determine an orientation that takes the source face arrangement to the target face arrangement 8684b5a892a1SMatthew G. Knepley 8685b5a892a1SMatthew G. Knepley Not collective 8686b5a892a1SMatthew G. Knepley 8687b5a892a1SMatthew G. Knepley Input Parameters: 8688b5a892a1SMatthew G. Knepley + ct - The DMPolytopeType 8689b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 8690b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 8691b5a892a1SMatthew G. Knepley 8692b5a892a1SMatthew G. Knepley Output Parameters: 8693b5a892a1SMatthew G. Knepley + ornt - The orientation which will take the source arrangement to the target arrangement 8694b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 8695b5a892a1SMatthew G. Knepley 8696b5a892a1SMatthew G. Knepley Level: advanced 8697b5a892a1SMatthew G. Knepley 8698db781477SPatrick Sanan .seealso: `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()` 8699b5a892a1SMatthew G. Knepley @*/ 8700b5a892a1SMatthew G. Knepley PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 8701b5a892a1SMatthew G. Knepley { 8702b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 8703b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct)/2; 8704b5a892a1SMatthew G. Knepley PetscInt o, c; 8705b5a892a1SMatthew G. Knepley 8706b5a892a1SMatthew G. Knepley PetscFunctionBegin; 8707b5a892a1SMatthew G. Knepley if (!nO) {*ornt = 0; *found = PETSC_TRUE; PetscFunctionReturn(0);} 8708b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 8709b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangment(ct, o); 8710b5a892a1SMatthew G. Knepley 8711b5a892a1SMatthew G. Knepley for (c = 0; c < cS; ++c) if (sourceCone[arr[c*2]] != targetCone[c]) break; 8712b5a892a1SMatthew G. Knepley if (c == cS) {*ornt = o; break;} 8713b5a892a1SMatthew G. Knepley } 8714b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 8715b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8716b5a892a1SMatthew G. Knepley } 8717b5a892a1SMatthew G. Knepley 8718b5a892a1SMatthew G. Knepley /*@C 8719b5a892a1SMatthew G. Knepley DMPolytopeGetOrientation - Determine an orientation that takes the source face arrangement to the target face arrangement 8720b5a892a1SMatthew G. Knepley 8721b5a892a1SMatthew G. Knepley Not collective 8722b5a892a1SMatthew G. Knepley 8723b5a892a1SMatthew G. Knepley Input Parameters: 8724b5a892a1SMatthew G. Knepley + ct - The DMPolytopeType 8725b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 8726b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 8727b5a892a1SMatthew G. Knepley 8728b5a892a1SMatthew G. Knepley Output Parameters: 8729b5a892a1SMatthew G. Knepley . ornt - The orientation which will take the source arrangement to the target arrangement 8730b5a892a1SMatthew G. Knepley 8731b5a892a1SMatthew G. Knepley Note: This function will fail if no suitable orientation can be found. 8732b5a892a1SMatthew G. Knepley 8733b5a892a1SMatthew G. Knepley Level: advanced 8734b5a892a1SMatthew G. Knepley 8735db781477SPatrick Sanan .seealso: `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()` 8736b5a892a1SMatthew G. Knepley @*/ 8737b5a892a1SMatthew G. Knepley PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 8738b5a892a1SMatthew G. Knepley { 8739b5a892a1SMatthew G. Knepley PetscBool found; 8740b5a892a1SMatthew G. Knepley 8741b5a892a1SMatthew G. Knepley PetscFunctionBegin; 87429566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 87437a8be351SBarry Smith PetscCheck(found,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 8744b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8745b5a892a1SMatthew G. Knepley } 8746b5a892a1SMatthew G. Knepley 8747b5a892a1SMatthew G. Knepley /*@C 8748b5a892a1SMatthew G. Knepley DMPolytopeMatchVertexOrientation - Determine an orientation that takes the source vertex arrangement to the target vertex arrangement 8749b5a892a1SMatthew G. Knepley 8750b5a892a1SMatthew G. Knepley Not collective 8751b5a892a1SMatthew G. Knepley 8752b5a892a1SMatthew G. Knepley Input Parameters: 8753b5a892a1SMatthew G. Knepley + ct - The DMPolytopeType 8754b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 8755b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 8756b5a892a1SMatthew G. Knepley 8757b5a892a1SMatthew G. Knepley Output Parameters: 8758b5a892a1SMatthew G. Knepley + ornt - The orientation which will take the source arrangement to the target arrangement 8759b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 8760b5a892a1SMatthew G. Knepley 8761b5a892a1SMatthew G. Knepley Level: advanced 8762b5a892a1SMatthew G. Knepley 8763db781477SPatrick Sanan .seealso: `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()` 8764b5a892a1SMatthew G. Knepley @*/ 8765b5a892a1SMatthew G. Knepley PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 8766b5a892a1SMatthew G. Knepley { 8767b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 8768b5a892a1SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangments(ct)/2; 8769b5a892a1SMatthew G. Knepley PetscInt o, c; 8770b5a892a1SMatthew G. Knepley 8771b5a892a1SMatthew G. Knepley PetscFunctionBegin; 8772b5a892a1SMatthew G. Knepley if (!nO) {*ornt = 0; *found = PETSC_TRUE; PetscFunctionReturn(0);} 8773b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 8774b5a892a1SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangment(ct, o); 8775b5a892a1SMatthew G. Knepley 8776b5a892a1SMatthew G. Knepley for (c = 0; c < cS; ++c) if (sourceVert[arr[c]] != targetVert[c]) break; 8777b5a892a1SMatthew G. Knepley if (c == cS) {*ornt = o; break;} 8778b5a892a1SMatthew G. Knepley } 8779b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 8780b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8781b5a892a1SMatthew G. Knepley } 8782b5a892a1SMatthew G. Knepley 8783b5a892a1SMatthew G. Knepley /*@C 8784b5a892a1SMatthew G. Knepley DMPolytopeGetVertexOrientation - Determine an orientation that takes the source vertex arrangement to the target vertex arrangement 8785b5a892a1SMatthew G. Knepley 8786b5a892a1SMatthew G. Knepley Not collective 8787b5a892a1SMatthew G. Knepley 8788b5a892a1SMatthew G. Knepley Input Parameters: 8789b5a892a1SMatthew G. Knepley + ct - The DMPolytopeType 8790b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 8791b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 8792b5a892a1SMatthew G. Knepley 8793b5a892a1SMatthew G. Knepley Output Parameters: 8794b5a892a1SMatthew G. Knepley . ornt - The orientation which will take the source arrangement to the target arrangement 8795b5a892a1SMatthew G. Knepley 8796b5a892a1SMatthew G. Knepley Note: This function will fail if no suitable orientation can be found. 8797b5a892a1SMatthew G. Knepley 8798b5a892a1SMatthew G. Knepley Level: advanced 8799b5a892a1SMatthew G. Knepley 8800db781477SPatrick Sanan .seealso: `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 8801b5a892a1SMatthew G. Knepley @*/ 8802b5a892a1SMatthew G. Knepley PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 8803b5a892a1SMatthew G. Knepley { 8804b5a892a1SMatthew G. Knepley PetscBool found; 8805b5a892a1SMatthew G. Knepley 8806b5a892a1SMatthew G. Knepley PetscFunctionBegin; 88079566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 88087a8be351SBarry Smith PetscCheck(found,PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 8809b5a892a1SMatthew G. Knepley PetscFunctionReturn(0); 8810b5a892a1SMatthew G. Knepley } 8811012bc364SMatthew G. Knepley 8812012bc364SMatthew G. Knepley /*@C 8813012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 8814012bc364SMatthew G. Knepley 8815012bc364SMatthew G. Knepley Not collective 8816012bc364SMatthew G. Knepley 8817012bc364SMatthew G. Knepley Input Parameters: 8818012bc364SMatthew G. Knepley + ct - The DMPolytopeType 8819012bc364SMatthew G. Knepley - point - Coordinates of the point 8820012bc364SMatthew G. Knepley 8821012bc364SMatthew G. Knepley Output Parameters: 8822012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 8823012bc364SMatthew G. Knepley 8824012bc364SMatthew G. Knepley Level: advanced 8825012bc364SMatthew G. Knepley 8826db781477SPatrick Sanan .seealso: `DMLocatePoints()` 8827012bc364SMatthew G. Knepley @*/ 8828012bc364SMatthew G. Knepley PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 8829012bc364SMatthew G. Knepley { 8830012bc364SMatthew G. Knepley PetscReal sum = 0.0; 8831012bc364SMatthew G. Knepley PetscInt d; 8832012bc364SMatthew G. Knepley 8833012bc364SMatthew G. Knepley PetscFunctionBegin; 8834012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 8835012bc364SMatthew G. Knepley switch (ct) { 8836012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 8837012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 8838012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 8839012bc364SMatthew G. Knepley if (point[d] < -1.0) {*inside = PETSC_FALSE; break;} 8840012bc364SMatthew G. Knepley sum += point[d]; 8841012bc364SMatthew G. Knepley } 8842012bc364SMatthew G. Knepley if (sum > PETSC_SMALL) {*inside = PETSC_FALSE; break;} 8843012bc364SMatthew G. Knepley break; 8844012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 8845012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 8846012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 8847012bc364SMatthew G. Knepley if (PetscAbsReal(point[d]) > 1.+PETSC_SMALL) {*inside = PETSC_FALSE; break;} 8848012bc364SMatthew G. Knepley break; 8849012bc364SMatthew G. Knepley default: 885098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 8851012bc364SMatthew G. Knepley } 8852012bc364SMatthew G. Knepley PetscFunctionReturn(0); 8853012bc364SMatthew G. Knepley } 8854