1d0295fc0SJunchao Zhang #include <petscvec.h> 2af0996ceSBarry Smith #include <petsc/private/dmimpl.h> /*I "petscdm.h" I*/ 3c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 4e6f8dbb6SToby Isaac #include <petsc/private/petscdsimpl.h> /*I "petscds.h" I*/ 53e922f36SToby Isaac #include <petscdmplex.h> 6d2b2dc1eSMatthew G. Knepley #include <petscdmceed.h> 7f19dbd58SToby Isaac #include <petscdmfield.h> 80c312b8eSJed Brown #include <petscsf.h> 92764a2aaSMatthew G. Knepley #include <petscds.h> 1047c6ae99SBarry Smith 11f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 12f918ec44SMatthew G. Knepley #include <petscfeceed.h> 13f918ec44SMatthew G. Knepley #endif 14f918ec44SMatthew G. Knepley 15cea3dcb8SSatish Balay #if !defined(PETSC_HAVE_WINDOWS_COMPILERS) 16cea3dcb8SSatish Balay #include <petsc/private/valgrind/memcheck.h> 1700d952a4SJed Brown #endif 1800d952a4SJed Brown 19732e2eb9SMatthew G Knepley PetscClassId DM_CLASSID; 20d67d17b1SMatthew G. Knepley PetscClassId DMLABEL_CLASSID; 21708be2fdSJed Brown PetscLogEvent DM_Convert, DM_GlobalToLocal, DM_LocalToGlobal, DM_LocalToLocal, DM_LocatePoints, DM_Coarsen, DM_Refine, DM_CreateInterpolation, DM_CreateRestriction, DM_CreateInjection, DM_CreateMatrix, DM_CreateMassMatrix, DM_Load, DM_AdaptInterpolator, DM_ProjectFunction; 2267a56275SMatthew G Knepley 23ea78f98cSLisandro Dalcin const char *const DMBoundaryTypes[] = {"NONE", "GHOSTED", "MIRROR", "PERIODIC", "TWIST", "DMBoundaryType", "DM_BOUNDARY_", NULL}; 24d1b3049bSMatthew G. Knepley const char *const DMBoundaryConditionTypes[] = {"INVALID", "ESSENTIAL", "NATURAL", "INVALID", "INVALID", "ESSENTIAL_FIELD", "NATURAL_FIELD", "INVALID", "INVALID", "ESSENTIAL_BD_FIELD", "NATURAL_RIEMANN", "DMBoundaryConditionType", "DM_BC_", NULL}; 250e762ea3SJed Brown const char *const DMBlockingTypes[] = {"TOPOLOGICAL_POINT", "FIELD_NODE", "DMBlockingType", "DM_BLOCKING_", NULL}; 26476787b7SMatthew G. Knepley const char *const DMPolytopeTypes[] = 27476787b7SMatthew G. Knepley {"vertex", "segment", "tensor_segment", "triangle", "quadrilateral", "tensor_quad", "tetrahedron", "hexahedron", "triangular_prism", "tensor_triangular_prism", "tensor_quadrilateral_prism", "pyramid", "FV_ghost_cell", "interior_ghost_cell", 28476787b7SMatthew G. Knepley "unknown", "unknown_cell", "unknown_face", "invalid", "DMPolytopeType", "DM_POLYTOPE_", NULL}; 292cbb9b06SVaclav Hapla const char *const DMCopyLabelsModes[] = {"replace", "keep", "fail", "DMCopyLabelsMode", "DM_COPY_LABELS_", NULL}; 3060c22052SBarry Smith 31a4121054SBarry Smith /*@ 32bb7acecfSBarry Smith DMCreate - Creates an empty `DM` object. `DM`s are the abstract objects in PETSc that mediate between meshes and discretizations and the 33bb7acecfSBarry Smith algebraic solvers, time integrators, and optimization algorithms. 34a4121054SBarry Smith 35d083f849SBarry Smith Collective 36a4121054SBarry Smith 37a4121054SBarry Smith Input Parameter: 38bb7acecfSBarry Smith . comm - The communicator for the `DM` object 39a4121054SBarry Smith 40a4121054SBarry Smith Output Parameter: 41bb7acecfSBarry Smith . dm - The `DM` object 42a4121054SBarry Smith 43a4121054SBarry Smith Level: beginner 44a4121054SBarry Smith 45bb7acecfSBarry Smith Notes: 46bb7acecfSBarry Smith See `DMType` for a brief summary of available `DM`. 47bb7acecfSBarry Smith 48bb7acecfSBarry Smith The type must then be set with `DMSetType()`. If you never call `DMSetType()` it will generate an 49bb7acecfSBarry Smith error when you try to use the dm. 50bb7acecfSBarry Smith 511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMType`, `DMDACreate()`, `DMDA`, `DMSLICED`, `DMCOMPOSITE`, `DMPLEX`, `DMMOAB`, `DMNETWORK` 52a4121054SBarry Smith @*/ 53d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreate(MPI_Comm comm, DM *dm) 54d71ae5a4SJacob Faibussowitsch { 55a4121054SBarry Smith DM v; 56e5e52638SMatthew G. Knepley PetscDS ds; 57a4121054SBarry Smith 58a4121054SBarry Smith PetscFunctionBegin; 594f572ea9SToby Isaac PetscAssertPointer(dm, 2); 600298fd71SBarry Smith *dm = NULL; 619566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 62a4121054SBarry Smith 639566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(v, DM_CLASSID, "DM", "Distribution Manager", "DM", comm, DMDestroy, DMView)); 64e7c4fc90SDmitry Karpeev 6562e5d2d2SJDBetteridge ((PetscObject)v)->non_cyclic_references = &DMCountNonCyclicReferences; 6662e5d2d2SJDBetteridge 6749be4549SMatthew G. Knepley v->setupcalled = PETSC_FALSE; 6849be4549SMatthew G. Knepley v->setfromoptionscalled = PETSC_FALSE; 690298fd71SBarry Smith v->ltogmap = NULL; 70a4ea9b21SRichard Tran Mills v->bind_below = 0; 711411c6eeSJed Brown v->bs = 1; 72171400e9SBarry Smith v->coloringtype = IS_COLORING_GLOBAL; 739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sf)); 749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &v->sectionSF)); 75c58f1c22SToby Isaac v->labels = NULL; 7634aa8a36SMatthew G. Knepley v->adjacency[0] = PETSC_FALSE; 7734aa8a36SMatthew G. Knepley v->adjacency[1] = PETSC_TRUE; 78c58f1c22SToby Isaac v->depthLabel = NULL; 79ba2698f1SMatthew G. Knepley v->celltypeLabel = NULL; 801bb6d2a8SBarry Smith v->localSection = NULL; 811bb6d2a8SBarry Smith v->globalSection = NULL; 823b8ba7d1SJed Brown v->defaultConstraint.section = NULL; 833b8ba7d1SJed Brown v->defaultConstraint.mat = NULL; 8479769bd5SJed Brown v->defaultConstraint.bias = NULL; 856858538eSMatthew G. Knepley v->coordinates[0].dim = PETSC_DEFAULT; 866858538eSMatthew G. Knepley v->coordinates[1].dim = PETSC_DEFAULT; 876858538eSMatthew G. Knepley v->sparseLocalize = PETSC_TRUE; 8896173672SStefano Zampini v->dim = PETSC_DETERMINE; 89435a35e8SMatthew G Knepley { 90435a35e8SMatthew G Knepley PetscInt i; 91435a35e8SMatthew G Knepley for (i = 0; i < 10; ++i) { 920298fd71SBarry Smith v->nullspaceConstructors[i] = NULL; 93f9d4088aSMatthew G. Knepley v->nearnullspaceConstructors[i] = NULL; 94435a35e8SMatthew G Knepley } 95435a35e8SMatthew G Knepley } 969566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 9707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(v, NULL, NULL, ds, NULL)); 989566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 999566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxCreate(&v->auxData)); 10014f150ffSMatthew G. Knepley v->dmBC = NULL; 101a8fb8f29SToby Isaac v->coarseMesh = NULL; 102f4d763aaSMatthew G. Knepley v->outputSequenceNum = -1; 103cdb7a50dSMatthew G. Knepley v->outputSequenceVal = 0.0; 1049566063dSJacob Faibussowitsch PetscCall(DMSetVecType(v, VECSTANDARD)); 1059566063dSJacob Faibussowitsch PetscCall(DMSetMatType(v, MATAIJ)); 1064a7a4c06SLawrence Mitchell 1071411c6eeSJed Brown *dm = v; 1083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109a4121054SBarry Smith } 110a4121054SBarry Smith 11138221697SMatthew G. Knepley /*@ 112bb7acecfSBarry Smith DMClone - Creates a `DM` object with the same topology as the original. 11338221697SMatthew G. Knepley 114d083f849SBarry Smith Collective 11538221697SMatthew G. Knepley 11638221697SMatthew G. Knepley Input Parameter: 117bb7acecfSBarry Smith . dm - The original `DM` object 11838221697SMatthew G. Knepley 11938221697SMatthew G. Knepley Output Parameter: 120bb7acecfSBarry Smith . newdm - The new `DM` object 12138221697SMatthew G. Knepley 12238221697SMatthew G. Knepley Level: beginner 12338221697SMatthew G. Knepley 1241cb8cacdSPatrick Sanan Notes: 125bb7acecfSBarry Smith For some `DM` implementations this is a shallow clone, the result of which may share (reference counted) information with its parent. For example, 126bb7acecfSBarry Smith `DMClone()` applied to a `DMPLEX` object will result in a new `DMPLEX` that shares the topology with the original `DMPLEX`. It does not 127bb7acecfSBarry Smith share the `PetscSection` of the original `DM`. 1281bb6d2a8SBarry Smith 129bb7acecfSBarry Smith The clone is considered set up if the original has been set up. 13089706ed2SPatrick Sanan 131bb7acecfSBarry Smith Use `DMConvert()` for a general way to create new `DM` from a given `DM` 132bb7acecfSBarry Smith 13360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMSetType()`, `DMSetLocalSection()`, `DMSetGlobalSection()`, `DMPLEX`, `DMConvert()` 13438221697SMatthew G. Knepley @*/ 135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClone(DM dm, DM *newdm) 136d71ae5a4SJacob Faibussowitsch { 13738221697SMatthew G. Knepley PetscSF sf; 13838221697SMatthew G. Knepley Vec coords; 13938221697SMatthew G. Knepley void *ctx; 140ec196627SMatthew G. Knepley MatOrderingType otype; 141ec196627SMatthew G. Knepley DMReorderDefaultFlag flg; 1426858538eSMatthew G. Knepley PetscInt dim, cdim, i; 14338221697SMatthew G. Knepley 14438221697SMatthew G. Knepley PetscFunctionBegin; 14538221697SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1464f572ea9SToby Isaac PetscAssertPointer(newdm, 2); 1479566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), newdm)); 1489566063dSJacob Faibussowitsch PetscCall(DMCopyLabels(dm, *newdm, PETSC_COPY_VALUES, PETSC_TRUE, DM_COPY_LABELS_FAIL)); 149ddf8437dSMatthew G. Knepley (*newdm)->leveldown = dm->leveldown; 150ddf8437dSMatthew G. Knepley (*newdm)->levelup = dm->levelup; 151c8a6034eSMark (*newdm)->prealloc_only = dm->prealloc_only; 152fc214432SJed Brown (*newdm)->prealloc_skip = dm->prealloc_skip; 1539566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->vectype)); 1549566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*newdm)->vectype)); 1559566063dSJacob Faibussowitsch PetscCall(PetscFree((*newdm)->mattype)); 1569566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*newdm)->mattype)); 1579566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 1589566063dSJacob Faibussowitsch PetscCall(DMSetDimension(*newdm, dim)); 159dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, clone, newdm); 1603f22bcbcSToby Isaac (*newdm)->setupcalled = dm->setupcalled; 1619566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1629566063dSJacob Faibussowitsch PetscCall(DMSetPointSF(*newdm, sf)); 1639566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(dm, &ctx)); 1649566063dSJacob Faibussowitsch PetscCall(DMSetApplicationContext(*newdm, ctx)); 165ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetDefault(dm, &flg)); 166ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetDefault(*newdm, flg)); 167ec196627SMatthew G. Knepley PetscCall(DMReorderSectionGetType(dm, &otype)); 168ec196627SMatthew G. Knepley PetscCall(DMReorderSectionSetType(*newdm, otype)); 1696858538eSMatthew G. Knepley for (i = 0; i < 2; ++i) { 1706858538eSMatthew G. Knepley if (dm->coordinates[i].dm) { 171be4c1c3eSMatthew G. Knepley DM ncdm; 172be4c1c3eSMatthew G. Knepley PetscSection cs; 1735a0206caSToby Isaac PetscInt pEnd = -1, pEndMax = -1; 174be4c1c3eSMatthew G. Knepley 1756858538eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm->coordinates[i].dm, &cs)); 1769566063dSJacob Faibussowitsch if (cs) PetscCall(PetscSectionGetChart(cs, NULL, &pEnd)); 177712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&pEnd, &pEndMax, 1, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 1785a0206caSToby Isaac if (pEndMax >= 0) { 1796858538eSMatthew G. Knepley PetscCall(DMClone(dm->coordinates[i].dm, &ncdm)); 1806858538eSMatthew G. Knepley PetscCall(DMCopyDisc(dm->coordinates[i].dm, ncdm)); 1819566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(ncdm, cs)); 1826858538eSMatthew G. Knepley if (i) PetscCall(DMSetCellCoordinateDM(*newdm, ncdm)); 1836858538eSMatthew G. Knepley else PetscCall(DMSetCoordinateDM(*newdm, ncdm)); 1849566063dSJacob Faibussowitsch PetscCall(DMDestroy(&ncdm)); 185be4c1c3eSMatthew G. Knepley } 186be4c1c3eSMatthew G. Knepley } 1876858538eSMatthew G. Knepley } 1889566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 1899566063dSJacob Faibussowitsch PetscCall(DMSetCoordinateDim(*newdm, cdim)); 1909566063dSJacob Faibussowitsch PetscCall(DMGetCoordinatesLocal(dm, &coords)); 19138221697SMatthew G. Knepley if (coords) { 1929566063dSJacob Faibussowitsch PetscCall(DMSetCoordinatesLocal(*newdm, coords)); 19338221697SMatthew G. Knepley } else { 1949566063dSJacob Faibussowitsch PetscCall(DMGetCoordinates(dm, &coords)); 1959566063dSJacob Faibussowitsch if (coords) PetscCall(DMSetCoordinates(*newdm, coords)); 19638221697SMatthew G. Knepley } 1976858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinatesLocal(dm, &coords)); 1986858538eSMatthew G. Knepley if (coords) { 1996858538eSMatthew G. Knepley PetscCall(DMSetCellCoordinatesLocal(*newdm, coords)); 2006858538eSMatthew G. Knepley } else { 2016858538eSMatthew G. Knepley PetscCall(DMGetCellCoordinates(dm, &coords)); 2026858538eSMatthew G. Knepley if (coords) PetscCall(DMSetCellCoordinates(*newdm, coords)); 2036858538eSMatthew G. Knepley } 20490b157c4SStefano Zampini { 2054fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 2066858538eSMatthew G. Knepley 2074fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 2084fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*newdm, maxCell, Lstart, L)); 209c6b900c6SMatthew G. Knepley } 21034aa8a36SMatthew G. Knepley { 21134aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 21234aa8a36SMatthew G. Knepley 2139566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, &useCone, &useClosure)); 2149566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(*newdm, PETSC_DEFAULT, useCone, useClosure)); 21534aa8a36SMatthew G. Knepley } 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21738221697SMatthew G. Knepley } 21838221697SMatthew G. Knepley 2199a42bb27SBarry Smith /*@C 220bb7acecfSBarry Smith DMSetVecType - Sets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 2219a42bb27SBarry Smith 22220f4b53cSBarry Smith Logically Collective 2239a42bb27SBarry Smith 224147403d9SBarry Smith Input Parameters: 22532546409SMatthew G. Knepley + dm - initial distributed array 226bb7acecfSBarry Smith - ctype - the vector type, for example `VECSTANDARD`, `VECCUDA`, or `VECVIENNACL` 2279a42bb27SBarry Smith 22820f4b53cSBarry Smith Options Database Key: 229147403d9SBarry Smith . -dm_vec_type ctype - the type of vector to create 2309a42bb27SBarry Smith 2319a42bb27SBarry Smith Level: intermediate 2329a42bb27SBarry Smith 23360225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMGetVecType()`, `DMSetMatType()`, `DMGetMatType()`, 234bb7acecfSBarry Smith `VECSTANDARD`, `VECCUDA`, `VECVIENNACL`, `DMCreateLocalVector()`, `DMCreateGlobalVector()` 2359a42bb27SBarry Smith @*/ 23632546409SMatthew G. Knepley PetscErrorCode DMSetVecType(DM dm, VecType ctype) 237d71ae5a4SJacob Faibussowitsch { 23832546409SMatthew G. Knepley char *tmp; 23932546409SMatthew G. Knepley 2409a42bb27SBarry Smith PetscFunctionBegin; 24132546409SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 24232546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 24332546409SMatthew G. Knepley tmp = (char *)dm->vectype; 24432546409SMatthew G. Knepley PetscCall(PetscStrallocpy(ctype, (char **)&dm->vectype)); 24532546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 2463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2479a42bb27SBarry Smith } 2489a42bb27SBarry Smith 249c0dedaeaSBarry Smith /*@C 250bb7acecfSBarry Smith DMGetVecType - Gets the type of vector created with `DMCreateLocalVector()` and `DMCreateGlobalVector()` 251c0dedaeaSBarry Smith 25220f4b53cSBarry Smith Logically Collective 253c0dedaeaSBarry Smith 254c0dedaeaSBarry Smith Input Parameter: 255c0dedaeaSBarry Smith . da - initial distributed array 256c0dedaeaSBarry Smith 257c0dedaeaSBarry Smith Output Parameter: 258c0dedaeaSBarry Smith . ctype - the vector type 259c0dedaeaSBarry Smith 260c0dedaeaSBarry Smith Level: intermediate 261c0dedaeaSBarry Smith 26260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMDestroy()`, `DMDAInterpolationType`, `VecType`, `DMSetMatType()`, `DMGetMatType()`, `DMSetVecType()` 263c0dedaeaSBarry Smith @*/ 264d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetVecType(DM da, VecType *ctype) 265d71ae5a4SJacob Faibussowitsch { 266c0dedaeaSBarry Smith PetscFunctionBegin; 267c0dedaeaSBarry Smith PetscValidHeaderSpecific(da, DM_CLASSID, 1); 268c0dedaeaSBarry Smith *ctype = da->vectype; 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270c0dedaeaSBarry Smith } 271c0dedaeaSBarry Smith 2725f1ad066SMatthew G Knepley /*@ 273bb7acecfSBarry Smith VecGetDM - Gets the `DM` defining the data layout of the vector 2745f1ad066SMatthew G Knepley 27520f4b53cSBarry Smith Not Collective 2765f1ad066SMatthew G Knepley 2775f1ad066SMatthew G Knepley Input Parameter: 278bb7acecfSBarry Smith . v - The `Vec` 2795f1ad066SMatthew G Knepley 2805f1ad066SMatthew G Knepley Output Parameter: 281bb7acecfSBarry Smith . dm - The `DM` 2825f1ad066SMatthew G Knepley 2835f1ad066SMatthew G Knepley Level: intermediate 2845f1ad066SMatthew G Knepley 285bb7acecfSBarry Smith Note: 286bb7acecfSBarry Smith A `Vec` may not have a `DM` associated with it. 287bb7acecfSBarry Smith 2881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecSetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 2895f1ad066SMatthew G Knepley @*/ 290d71ae5a4SJacob Faibussowitsch PetscErrorCode VecGetDM(Vec v, DM *dm) 291d71ae5a4SJacob Faibussowitsch { 2925f1ad066SMatthew G Knepley PetscFunctionBegin; 2935f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 2944f572ea9SToby Isaac PetscAssertPointer(dm, 2); 2959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)v, "__PETSc_dm", (PetscObject *)dm)); 2963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2975f1ad066SMatthew G Knepley } 2985f1ad066SMatthew G Knepley 2995f1ad066SMatthew G Knepley /*@ 300bb7acecfSBarry Smith VecSetDM - Sets the `DM` defining the data layout of the vector. 3015f1ad066SMatthew G Knepley 30220f4b53cSBarry Smith Not Collective 3035f1ad066SMatthew G Knepley 3045f1ad066SMatthew G Knepley Input Parameters: 305bb7acecfSBarry Smith + v - The `Vec` 306bb7acecfSBarry Smith - dm - The `DM` 3075f1ad066SMatthew G Knepley 30820f4b53cSBarry Smith Level: developer 30920f4b53cSBarry Smith 310*73ff1848SBarry Smith Notes: 311bb7acecfSBarry Smith This is rarely used, generally one uses `DMGetLocalVector()` or `DMGetGlobalVector()` to create a vector associated with a given `DM` 312d9805387SMatthew G. Knepley 313bb7acecfSBarry Smith This is NOT the same as `DMCreateGlobalVector()` since it does not change the view methods or perform other customization, but merely sets the `DM` member. 314bb7acecfSBarry Smith 3151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecGetDM()`, `DMGetLocalVector()`, `DMGetGlobalVector()`, `DMSetVecType()` 3165f1ad066SMatthew G Knepley @*/ 317d71ae5a4SJacob Faibussowitsch PetscErrorCode VecSetDM(Vec v, DM dm) 318d71ae5a4SJacob Faibussowitsch { 3195f1ad066SMatthew G Knepley PetscFunctionBegin; 3205f1ad066SMatthew G Knepley PetscValidHeaderSpecific(v, VEC_CLASSID, 1); 321d7f50e27SLisandro Dalcin if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 3229566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)v, "__PETSc_dm", (PetscObject)dm)); 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3245f1ad066SMatthew G Knepley } 3255f1ad066SMatthew G Knepley 326521d9a4cSLisandro Dalcin /*@C 327bb7acecfSBarry Smith DMSetISColoringType - Sets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 3288f1509bcSBarry Smith 32920f4b53cSBarry Smith Logically Collective 3308f1509bcSBarry Smith 3318f1509bcSBarry Smith Input Parameters: 332bb7acecfSBarry Smith + dm - the `DM` context 3338f1509bcSBarry Smith - ctype - the matrix type 3348f1509bcSBarry Smith 33520f4b53cSBarry Smith Options Database Key: 3368f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3378f1509bcSBarry Smith 3388f1509bcSBarry Smith Level: intermediate 3398f1509bcSBarry Smith 3401cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 341bb7acecfSBarry Smith `DMGetISColoringType()`, `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3428f1509bcSBarry Smith @*/ 343d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetISColoringType(DM dm, ISColoringType ctype) 344d71ae5a4SJacob Faibussowitsch { 3458f1509bcSBarry Smith PetscFunctionBegin; 3468f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3478f1509bcSBarry Smith dm->coloringtype = ctype; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3498f1509bcSBarry Smith } 3508f1509bcSBarry Smith 3518f1509bcSBarry Smith /*@C 352bb7acecfSBarry Smith DMGetISColoringType - Gets the type of coloring, `IS_COLORING_GLOBAL` or `IS_COLORING_LOCAL` that is created by the `DM` 353521d9a4cSLisandro Dalcin 35420f4b53cSBarry Smith Logically Collective 355521d9a4cSLisandro Dalcin 356521d9a4cSLisandro Dalcin Input Parameter: 357bb7acecfSBarry Smith . dm - the `DM` context 3588f1509bcSBarry Smith 3598f1509bcSBarry Smith Output Parameter: 3608f1509bcSBarry Smith . ctype - the matrix type 3618f1509bcSBarry Smith 36220f4b53cSBarry Smith Options Database Key: 3638f1509bcSBarry Smith . -dm_is_coloring_type - global or local 3648f1509bcSBarry Smith 3658f1509bcSBarry Smith Level: intermediate 3668f1509bcSBarry Smith 3671cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMGetMatType()`, 36842747ad1SJacob Faibussowitsch `ISColoringType`, `IS_COLORING_GLOBAL`, `IS_COLORING_LOCAL` 3698f1509bcSBarry Smith @*/ 370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetISColoringType(DM dm, ISColoringType *ctype) 371d71ae5a4SJacob Faibussowitsch { 3728f1509bcSBarry Smith PetscFunctionBegin; 3738f1509bcSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3748f1509bcSBarry Smith *ctype = dm->coloringtype; 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3768f1509bcSBarry Smith } 3778f1509bcSBarry Smith 3788f1509bcSBarry Smith /*@C 379bb7acecfSBarry Smith DMSetMatType - Sets the type of matrix created with `DMCreateMatrix()` 3808f1509bcSBarry Smith 38120f4b53cSBarry Smith Logically Collective 3828f1509bcSBarry Smith 3838f1509bcSBarry Smith Input Parameters: 384bb7acecfSBarry Smith + dm - the `DM` context 385bb7acecfSBarry Smith - ctype - the matrix type, for example `MATMPIAIJ` 386521d9a4cSLisandro Dalcin 38720f4b53cSBarry Smith Options Database Key: 388bb7acecfSBarry Smith . -dm_mat_type ctype - the type of the matrix to create, for example mpiaij 389521d9a4cSLisandro Dalcin 390521d9a4cSLisandro Dalcin Level: intermediate 391521d9a4cSLisandro Dalcin 39242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatType`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMGetMatType()`, `DMCreateGlobalVector()`, `DMCreateLocalVector()` 393521d9a4cSLisandro Dalcin @*/ 394d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatType(DM dm, MatType ctype) 395d71ae5a4SJacob Faibussowitsch { 39632546409SMatthew G. Knepley char *tmp; 39732546409SMatthew G. Knepley 398521d9a4cSLisandro Dalcin PetscFunctionBegin; 399521d9a4cSLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 40032546409SMatthew G. Knepley PetscAssertPointer(ctype, 2); 40132546409SMatthew G. Knepley tmp = (char *)dm->mattype; 4029566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(ctype, (char **)&dm->mattype)); 40332546409SMatthew G. Knepley PetscCall(PetscFree(tmp)); 4043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 405521d9a4cSLisandro Dalcin } 406521d9a4cSLisandro Dalcin 407c0dedaeaSBarry Smith /*@C 40820f4b53cSBarry Smith DMGetMatType - Gets the type of matrix that would be created with `DMCreateMatrix()` 409c0dedaeaSBarry Smith 41020f4b53cSBarry Smith Logically Collective 411c0dedaeaSBarry Smith 412c0dedaeaSBarry Smith Input Parameter: 413bb7acecfSBarry Smith . dm - the `DM` context 414c0dedaeaSBarry Smith 415c0dedaeaSBarry Smith Output Parameter: 416c0dedaeaSBarry Smith . ctype - the matrix type 417c0dedaeaSBarry Smith 418c0dedaeaSBarry Smith Level: intermediate 419c0dedaeaSBarry Smith 42042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMDACreate1d()`, `DMDACreate2d()`, `DMDACreate3d()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixPreallocateOnly()`, `MatType`, `DMSetMatType()` 421c0dedaeaSBarry Smith @*/ 422d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetMatType(DM dm, MatType *ctype) 423d71ae5a4SJacob Faibussowitsch { 424c0dedaeaSBarry Smith PetscFunctionBegin; 425c0dedaeaSBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 426c0dedaeaSBarry Smith *ctype = dm->mattype; 4273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 428c0dedaeaSBarry Smith } 429c0dedaeaSBarry Smith 430c688c046SMatthew G Knepley /*@ 431bb7acecfSBarry Smith MatGetDM - Gets the `DM` defining the data layout of the matrix 432c688c046SMatthew G Knepley 43320f4b53cSBarry Smith Not Collective 434c688c046SMatthew G Knepley 435c688c046SMatthew G Knepley Input Parameter: 436bb7acecfSBarry Smith . A - The `Mat` 437c688c046SMatthew G Knepley 438c688c046SMatthew G Knepley Output Parameter: 439bb7acecfSBarry Smith . dm - The `DM` 440c688c046SMatthew G Knepley 441c688c046SMatthew G Knepley Level: intermediate 442c688c046SMatthew G Knepley 443bb7acecfSBarry Smith Note: 444bb7acecfSBarry Smith A matrix may not have a `DM` associated with it 445bb7acecfSBarry Smith 446*73ff1848SBarry Smith Developer Note: 447bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with the `Mat` through a `PetscObjectCompose()` operation 4488f1509bcSBarry Smith 4491cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatSetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 450c688c046SMatthew G Knepley @*/ 451d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDM(Mat A, DM *dm) 452d71ae5a4SJacob Faibussowitsch { 453c688c046SMatthew G Knepley PetscFunctionBegin; 454c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4554f572ea9SToby Isaac PetscAssertPointer(dm, 2); 4569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_dm", (PetscObject *)dm)); 4573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 458c688c046SMatthew G Knepley } 459c688c046SMatthew G Knepley 460c688c046SMatthew G Knepley /*@ 461bb7acecfSBarry Smith MatSetDM - Sets the `DM` defining the data layout of the matrix 462c688c046SMatthew G Knepley 46320f4b53cSBarry Smith Not Collective 464c688c046SMatthew G Knepley 465c688c046SMatthew G Knepley Input Parameters: 46620f4b53cSBarry Smith + A - The `Mat` 46720f4b53cSBarry Smith - dm - The `DM` 468c688c046SMatthew G Knepley 469bb7acecfSBarry Smith Level: developer 470c688c046SMatthew G Knepley 471bb7acecfSBarry Smith Note: 472bb7acecfSBarry Smith This is rarely used in practice, rather `DMCreateMatrix()` is used to create a matrix associated with a particular `DM` 473bb7acecfSBarry Smith 474*73ff1848SBarry Smith Developer Note: 475bb7acecfSBarry Smith Since the `Mat` class doesn't know about the `DM` class the `DM` object is associated with 476bb7acecfSBarry Smith the `Mat` through a `PetscObjectCompose()` operation 4778f1509bcSBarry Smith 4781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatGetDM()`, `DMCreateMatrix()`, `DMSetMatType()` 479c688c046SMatthew G Knepley @*/ 480d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetDM(Mat A, DM dm) 481d71ae5a4SJacob Faibussowitsch { 482c688c046SMatthew G Knepley PetscFunctionBegin; 483c688c046SMatthew G Knepley PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 4848865f1eaSKarl Rupp if (dm) PetscValidHeaderSpecific(dm, DM_CLASSID, 2); 4859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "__PETSc_dm", (PetscObject)dm)); 4863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487c688c046SMatthew G Knepley } 488c688c046SMatthew G Knepley 4899a42bb27SBarry Smith /*@C 490bb7acecfSBarry Smith DMSetOptionsPrefix - Sets the prefix prepended to all option names when searching through the options database 4919a42bb27SBarry Smith 49220f4b53cSBarry Smith Logically Collective 4939a42bb27SBarry Smith 494d8d19677SJose E. Roman Input Parameters: 49560225df5SJacob Faibussowitsch + dm - the `DM` context 496bb7acecfSBarry Smith - prefix - the prefix to prepend 4979a42bb27SBarry Smith 49820f4b53cSBarry Smith Level: advanced 49920f4b53cSBarry Smith 50020f4b53cSBarry Smith Note: 5019a42bb27SBarry Smith A hyphen (-) must NOT be given at the beginning of the prefix name. 5029a42bb27SBarry Smith The first character of all runtime options is AUTOMATICALLY the hyphen. 5039a42bb27SBarry Smith 5041cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscObjectSetOptionsPrefix()`, `DMSetFromOptions()` 5059a42bb27SBarry Smith @*/ 506d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOptionsPrefix(DM dm, const char prefix[]) 507d71ae5a4SJacob Faibussowitsch { 5089a42bb27SBarry Smith PetscFunctionBegin; 5099a42bb27SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm, prefix)); 5111baa6e33SBarry Smith if (dm->sf) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sf, prefix)); 5121baa6e33SBarry Smith if (dm->sectionSF) PetscCall(PetscObjectSetOptionsPrefix((PetscObject)dm->sectionSF, prefix)); 5133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5149a42bb27SBarry Smith } 5159a42bb27SBarry Smith 51631697293SDave May /*@C 517da81f932SPierre Jolivet DMAppendOptionsPrefix - Appends an additional string to an already existing prefix used for searching for 518bb7acecfSBarry Smith `DM` options in the options database. 51931697293SDave May 52020f4b53cSBarry Smith Logically Collective 52131697293SDave May 52231697293SDave May Input Parameters: 523bb7acecfSBarry Smith + dm - the `DM` context 524bb7acecfSBarry Smith - prefix - the string to append to the current prefix 52531697293SDave May 52620f4b53cSBarry Smith Level: advanced 52720f4b53cSBarry Smith 52820f4b53cSBarry Smith Note: 529bb7acecfSBarry Smith If the `DM` does not currently have an options prefix then this value is used alone as the prefix as if `DMSetOptionsPrefix()` had been called. 53031697293SDave May A hyphen (-) must NOT be given at the beginning of the prefix name. 53131697293SDave May The first character of all runtime options is AUTOMATICALLY the hyphen. 53231697293SDave May 5331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMGetOptionsPrefix()`, `PetscObjectAppendOptionsPrefix()`, `DMSetFromOptions()` 53431697293SDave May @*/ 535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAppendOptionsPrefix(DM dm, const char prefix[]) 536d71ae5a4SJacob Faibussowitsch { 53731697293SDave May PetscFunctionBegin; 53831697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5399566063dSJacob Faibussowitsch PetscCall(PetscObjectAppendOptionsPrefix((PetscObject)dm, prefix)); 5403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54131697293SDave May } 54231697293SDave May 54331697293SDave May /*@C 54431697293SDave May DMGetOptionsPrefix - Gets the prefix used for searching for all 545bb7acecfSBarry Smith DM options in the options database. 54631697293SDave May 54731697293SDave May Not Collective 54831697293SDave May 5492fe279fdSBarry Smith Input Parameter: 550bb7acecfSBarry Smith . dm - the `DM` context 55131697293SDave May 5522fe279fdSBarry Smith Output Parameter: 55331697293SDave May . prefix - pointer to the prefix string used is returned 55431697293SDave May 55531697293SDave May Level: advanced 55631697293SDave May 557*73ff1848SBarry Smith Fortran Note: 55820f4b53cSBarry Smith Pass in a string 'prefix' of 55920f4b53cSBarry Smith sufficient length to hold the prefix. 56020f4b53cSBarry Smith 5611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetOptionsPrefix()`, `DMAppendOptionsPrefix()`, `DMSetFromOptions()` 56231697293SDave May @*/ 563d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOptionsPrefix(DM dm, const char *prefix[]) 564d71ae5a4SJacob Faibussowitsch { 56531697293SDave May PetscFunctionBegin; 56631697293SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)dm, prefix)); 5683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56931697293SDave May } 57031697293SDave May 57162e5d2d2SJDBetteridge static PetscErrorCode DMCountNonCyclicReferences_Internal(DM dm, PetscBool recurseCoarse, PetscBool recurseFine, PetscInt *ncrefct) 572d71ae5a4SJacob Faibussowitsch { 5736eb26441SStefano Zampini PetscInt refct = ((PetscObject)dm)->refct; 57488bdff64SToby Isaac 57588bdff64SToby Isaac PetscFunctionBegin; 576aab5bcd8SJed Brown *ncrefct = 0; 57788bdff64SToby Isaac if (dm->coarseMesh && dm->coarseMesh->fineMesh == dm) { 57888bdff64SToby Isaac refct--; 57988bdff64SToby Isaac if (recurseCoarse) { 58088bdff64SToby Isaac PetscInt coarseCount; 58188bdff64SToby Isaac 58262e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->coarseMesh, PETSC_TRUE, PETSC_FALSE, &coarseCount)); 58388bdff64SToby Isaac refct += coarseCount; 58488bdff64SToby Isaac } 58588bdff64SToby Isaac } 58688bdff64SToby Isaac if (dm->fineMesh && dm->fineMesh->coarseMesh == dm) { 58788bdff64SToby Isaac refct--; 58888bdff64SToby Isaac if (recurseFine) { 58988bdff64SToby Isaac PetscInt fineCount; 59088bdff64SToby Isaac 59162e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(dm->fineMesh, PETSC_FALSE, PETSC_TRUE, &fineCount)); 59288bdff64SToby Isaac refct += fineCount; 59388bdff64SToby Isaac } 59488bdff64SToby Isaac } 59588bdff64SToby Isaac *ncrefct = refct; 5963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59788bdff64SToby Isaac } 59888bdff64SToby Isaac 59962e5d2d2SJDBetteridge /* Generic wrapper for DMCountNonCyclicReferences_Internal() */ 60062e5d2d2SJDBetteridge PetscErrorCode DMCountNonCyclicReferences(PetscObject dm, PetscInt *ncrefct) 60162e5d2d2SJDBetteridge { 60262e5d2d2SJDBetteridge PetscFunctionBegin; 60362e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal((DM)dm, PETSC_TRUE, PETSC_TRUE, ncrefct)); 6043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60562e5d2d2SJDBetteridge } 60662e5d2d2SJDBetteridge 607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroyLabelLinkList_Internal(DM dm) 608d71ae5a4SJacob Faibussowitsch { 6095d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 610354557abSToby Isaac 611354557abSToby Isaac PetscFunctionBegin; 612354557abSToby Isaac /* destroy the labels */ 613354557abSToby Isaac while (next) { 614354557abSToby Isaac DMLabelLink tmp = next->next; 615354557abSToby Isaac 6165d80c0bfSVaclav Hapla if (next->label == dm->depthLabel) dm->depthLabel = NULL; 617ba2698f1SMatthew G. Knepley if (next->label == dm->celltypeLabel) dm->celltypeLabel = NULL; 6189566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 6199566063dSJacob Faibussowitsch PetscCall(PetscFree(next)); 620354557abSToby Isaac next = tmp; 621354557abSToby Isaac } 6225d80c0bfSVaclav Hapla dm->labels = NULL; 6233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 624354557abSToby Isaac } 625354557abSToby Isaac 62666976f2fSJacob Faibussowitsch static PetscErrorCode DMDestroyCoordinates_Private(DMCoordinates *c) 627d71ae5a4SJacob Faibussowitsch { 6286858538eSMatthew G. Knepley PetscFunctionBegin; 6296858538eSMatthew G. Knepley c->dim = PETSC_DEFAULT; 6306858538eSMatthew G. Knepley PetscCall(DMDestroy(&c->dm)); 6316858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->x)); 6326858538eSMatthew G. Knepley PetscCall(VecDestroy(&c->xl)); 6336858538eSMatthew G. Knepley PetscCall(DMFieldDestroy(&c->field)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6356858538eSMatthew G. Knepley } 6366858538eSMatthew G. Knepley 6371fb7b255SJunchao Zhang /*@C 638bb7acecfSBarry Smith DMDestroy - Destroys a `DM`. 63947c6ae99SBarry Smith 64020f4b53cSBarry Smith Collective 64147c6ae99SBarry Smith 64247c6ae99SBarry Smith Input Parameter: 643bb7acecfSBarry Smith . dm - the `DM` object to destroy 64447c6ae99SBarry Smith 64547c6ae99SBarry Smith Level: developer 64647c6ae99SBarry Smith 6471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMType`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 64847c6ae99SBarry Smith @*/ 649d71ae5a4SJacob Faibussowitsch PetscErrorCode DMDestroy(DM *dm) 650d71ae5a4SJacob Faibussowitsch { 6516eb26441SStefano Zampini PetscInt cnt; 65247c6ae99SBarry Smith 65347c6ae99SBarry Smith PetscFunctionBegin; 6543ba16761SJacob Faibussowitsch if (!*dm) PetscFunctionReturn(PETSC_SUCCESS); 655f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*dm, DM_CLASSID, 1); 65687e657c6SBarry Smith 65788bdff64SToby Isaac /* count all non-cyclic references in the doubly-linked list of coarse<->fine meshes */ 65862e5d2d2SJDBetteridge PetscCall(DMCountNonCyclicReferences_Internal(*dm, PETSC_TRUE, PETSC_TRUE, &cnt)); 659f4f49eeaSPierre Jolivet --((PetscObject)*dm)->refct; 6609371c9d4SSatish Balay if (--cnt > 0) { 6619371c9d4SSatish Balay *dm = NULL; 6623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6639371c9d4SSatish Balay } 664f4f49eeaSPierre Jolivet if (((PetscObject)*dm)->refct < 0) PetscFunctionReturn(PETSC_SUCCESS); 665f4f49eeaSPierre Jolivet ((PetscObject)*dm)->refct = 0; 6666eb26441SStefano Zampini 6679566063dSJacob Faibussowitsch PetscCall(DMClearGlobalVectors(*dm)); 6689566063dSJacob Faibussowitsch PetscCall(DMClearLocalVectors(*dm)); 669974ca4ecSStefano Zampini PetscCall(DMClearNamedGlobalVectors(*dm)); 670974ca4ecSStefano Zampini PetscCall(DMClearNamedLocalVectors(*dm)); 6712348bcf4SPeter Brune 672b17ce1afSJed Brown /* Destroy the list of hooks */ 673c833c3b5SJed Brown { 674c833c3b5SJed Brown DMCoarsenHookLink link, next; 675b17ce1afSJed Brown for (link = (*dm)->coarsenhook; link; link = next) { 676b17ce1afSJed Brown next = link->next; 6779566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 678b17ce1afSJed Brown } 6790298fd71SBarry Smith (*dm)->coarsenhook = NULL; 680c833c3b5SJed Brown } 681c833c3b5SJed Brown { 682c833c3b5SJed Brown DMRefineHookLink link, next; 683c833c3b5SJed Brown for (link = (*dm)->refinehook; link; link = next) { 684c833c3b5SJed Brown next = link->next; 6859566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 686c833c3b5SJed Brown } 6870298fd71SBarry Smith (*dm)->refinehook = NULL; 688c833c3b5SJed Brown } 689be081cd6SPeter Brune { 690be081cd6SPeter Brune DMSubDomainHookLink link, next; 691be081cd6SPeter Brune for (link = (*dm)->subdomainhook; link; link = next) { 692be081cd6SPeter Brune next = link->next; 6939566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 694be081cd6SPeter Brune } 6950298fd71SBarry Smith (*dm)->subdomainhook = NULL; 696be081cd6SPeter Brune } 697baf369e7SPeter Brune { 698baf369e7SPeter Brune DMGlobalToLocalHookLink link, next; 699baf369e7SPeter Brune for (link = (*dm)->gtolhook; link; link = next) { 700baf369e7SPeter Brune next = link->next; 7019566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 702baf369e7SPeter Brune } 7030298fd71SBarry Smith (*dm)->gtolhook = NULL; 704baf369e7SPeter Brune } 705d4d07f1eSToby Isaac { 706d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, next; 707d4d07f1eSToby Isaac for (link = (*dm)->ltoghook; link; link = next) { 708d4d07f1eSToby Isaac next = link->next; 7099566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 710d4d07f1eSToby Isaac } 711d4d07f1eSToby Isaac (*dm)->ltoghook = NULL; 712d4d07f1eSToby Isaac } 713aa1993deSMatthew G Knepley /* Destroy the work arrays */ 714aa1993deSMatthew G Knepley { 715aa1993deSMatthew G Knepley DMWorkLink link, next; 716936381afSPierre Jolivet PetscCheck(!(*dm)->workout, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Work array still checked out %p %p", (void *)(*dm)->workout, (void *)(*dm)->workout->mem); 717aa1993deSMatthew G Knepley for (link = (*dm)->workin; link; link = next) { 718aa1993deSMatthew G Knepley next = link->next; 7199566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 7209566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 721aa1993deSMatthew G Knepley } 7220298fd71SBarry Smith (*dm)->workin = NULL; 723aa1993deSMatthew G Knepley } 724c58f1c22SToby Isaac /* destroy the labels */ 7259566063dSJacob Faibussowitsch PetscCall(DMDestroyLabelLinkList_Internal(*dm)); 726f4cdcedcSVaclav Hapla /* destroy the fields */ 7279566063dSJacob Faibussowitsch PetscCall(DMClearFields(*dm)); 728f4cdcedcSVaclav Hapla /* destroy the boundaries */ 729e6f8dbb6SToby Isaac { 730e6f8dbb6SToby Isaac DMBoundary next = (*dm)->boundary; 731e6f8dbb6SToby Isaac while (next) { 732e6f8dbb6SToby Isaac DMBoundary b = next; 733e6f8dbb6SToby Isaac 734e6f8dbb6SToby Isaac next = b->next; 7359566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 736e6f8dbb6SToby Isaac } 737e6f8dbb6SToby Isaac } 738b17ce1afSJed Brown 7399566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmksp)); 7409566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmsnes)); 7419566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&(*dm)->dmts)); 74252536dc3SBarry Smith 74348a46eb9SPierre Jolivet if ((*dm)->ctx && (*dm)->ctxdestroy) PetscCall((*(*dm)->ctxdestroy)(&(*dm)->ctx)); 7449566063dSJacob Faibussowitsch PetscCall(MatFDColoringDestroy(&(*dm)->fd)); 7459566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&(*dm)->ltogmap)); 7469566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->vectype)); 7479566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->mattype)); 74888ed4aceSMatthew G Knepley 7499566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->localSection)); 7509566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->globalSection)); 751adc21957SMatthew G. Knepley PetscCall(PetscFree((*dm)->reorderSectionType)); 7529566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&(*dm)->map)); 7539566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&(*dm)->defaultConstraint.section)); 7549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&(*dm)->defaultConstraint.mat)); 7559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sf)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*dm)->sectionSF)); 75748a46eb9SPierre Jolivet if ((*dm)->sfNatural) PetscCall(PetscSFDestroy(&(*dm)->sfNatural)); 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)(*dm)->sfMigration)); 759e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(*dm)); 7609566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDestroy(&(*dm)->auxData)); 76148a46eb9SPierre Jolivet if ((*dm)->coarseMesh && (*dm)->coarseMesh->fineMesh == *dm) PetscCall(DMSetFineDM((*dm)->coarseMesh, NULL)); 7626eb26441SStefano Zampini 7639566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->coarseMesh)); 76448a46eb9SPierre Jolivet if ((*dm)->fineMesh && (*dm)->fineMesh->coarseMesh == *dm) PetscCall(DMSetCoarseDM((*dm)->fineMesh, NULL)); 7659566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->fineMesh)); 7664fb89dddSMatthew G. Knepley PetscCall(PetscFree((*dm)->Lstart)); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->L)); 7689566063dSJacob Faibussowitsch PetscCall(PetscFree((*dm)->maxCell)); 7696858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[0])); 7706858538eSMatthew G. Knepley PetscCall(DMDestroyCoordinates_Private(&(*dm)->coordinates[1])); 7719566063dSJacob Faibussowitsch if ((*dm)->transformDestroy) PetscCall((*(*dm)->transformDestroy)(*dm, (*dm)->transformCtx)); 7729566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->transformDM)); 7739566063dSJacob Faibussowitsch PetscCall(VecDestroy(&(*dm)->transform)); 7746725e60dSJed Brown PetscCall(VecScatterDestroy(&(*dm)->periodic.affine_to_local)); 7756725e60dSJed Brown PetscCall(VecDestroy(&(*dm)->periodic.affine)); 7766636e97aSMatthew G Knepley 7779566063dSJacob Faibussowitsch PetscCall(DMClearDS(*dm)); 7789566063dSJacob Faibussowitsch PetscCall(DMDestroy(&(*dm)->dmBC)); 779e04113cfSBarry Smith /* if memory was published with SAWs then destroy it */ 7809566063dSJacob Faibussowitsch PetscCall(PetscObjectSAWsViewOff((PetscObject)*dm)); 781732e2eb9SMatthew G Knepley 782213acdd3SPierre Jolivet PetscTryTypeMethod(*dm, destroy); 7839566063dSJacob Faibussowitsch PetscCall(DMMonitorCancel(*dm)); 784d2b2dc1eSMatthew G. Knepley PetscCall(DMCeedDestroy(&(*dm)->dmceed)); 785f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 7869566063dSJacob Faibussowitsch PetscCallCEED(CeedElemRestrictionDestroy(&(*dm)->ceedERestrict)); 7879566063dSJacob Faibussowitsch PetscCallCEED(CeedDestroy(&(*dm)->ceed)); 788f918ec44SMatthew G. Knepley #endif 789435a35e8SMatthew G Knepley /* We do not destroy (*dm)->data here so that we can reference count backend objects */ 7909566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(dm)); 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 79247c6ae99SBarry Smith } 79347c6ae99SBarry Smith 794d7bf68aeSBarry Smith /*@ 795bb7acecfSBarry Smith DMSetUp - sets up the data structures inside a `DM` object 796d7bf68aeSBarry Smith 79720f4b53cSBarry Smith Collective 798d7bf68aeSBarry Smith 799d7bf68aeSBarry Smith Input Parameter: 800bb7acecfSBarry Smith . dm - the `DM` object to setup 801d7bf68aeSBarry Smith 802bb7acecfSBarry Smith Level: intermediate 803d7bf68aeSBarry Smith 804bb7acecfSBarry Smith Note: 805bb7acecfSBarry Smith This is usually called after various parameter setting operations and `DMSetFromOptions()` are called on the `DM` 806bb7acecfSBarry Smith 8071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreate()`, `DMSetType()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 808d7bf68aeSBarry Smith @*/ 809d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUp(DM dm) 810d71ae5a4SJacob Faibussowitsch { 811d7bf68aeSBarry Smith PetscFunctionBegin; 812171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8133ba16761SJacob Faibussowitsch if (dm->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 814dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setup); 8158387afaaSJed Brown dm->setupcalled = PETSC_TRUE; 8163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 817d7bf68aeSBarry Smith } 818d7bf68aeSBarry Smith 819d7bf68aeSBarry Smith /*@ 820bb7acecfSBarry Smith DMSetFromOptions - sets parameters in a `DM` from the options database 821d7bf68aeSBarry Smith 82220f4b53cSBarry Smith Collective 823d7bf68aeSBarry Smith 824d7bf68aeSBarry Smith Input Parameter: 825bb7acecfSBarry Smith . dm - the `DM` object to set options for 826d7bf68aeSBarry Smith 82720f4b53cSBarry Smith Options Database Keys: 828bb7acecfSBarry Smith + -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 829bb7acecfSBarry Smith . -dm_vec_type <type> - type of vector to create inside `DM` 830bb7acecfSBarry Smith . -dm_mat_type <type> - type of matrix to create inside `DM` 831a4ea9b21SRichard Tran Mills . -dm_is_coloring_type - <global or local> 83220f4b53cSBarry Smith . -dm_bind_below <n> - bind (force execution on CPU) for `Vec` and `Mat` objects with local size (number of vector entries or matrix rows) below n; currently only supported for `DMDA` 83320f4b53cSBarry Smith . -dm_plex_filename <str> - File containing a mesh 8349318fe57SMatthew G. Knepley . -dm_plex_boundary_filename <str> - File containing a mesh boundary 835cd7e8a5eSksagiyam . -dm_plex_name <str> - Name of the mesh in the file 8365dca41c3SJed Brown . -dm_plex_shape <shape> - The domain shape, such as `BOX`, `SPHERE`, etc. 8379318fe57SMatthew G. Knepley . -dm_plex_cell <ct> - Cell shape 8389318fe57SMatthew G. Knepley . -dm_plex_reference_cell_domain <bool> - Use a reference cell domain 8399318fe57SMatthew G. Knepley . -dm_plex_dim <dim> - Set the topological dimension 840bb7acecfSBarry Smith . -dm_plex_simplex <bool> - `PETSC_TRUE` for simplex elements, `PETSC_FALSE` for tensor elements 841bb7acecfSBarry Smith . -dm_plex_interpolate <bool> - `PETSC_TRUE` turns on topological interpolation (creating edges and faces) 8429318fe57SMatthew G. Knepley . -dm_plex_scale <sc> - Scale factor for mesh coordinates 843be664eb1SMatthew G. Knepley . -dm_coord_remap <bool> - Map coordinates using a function 844be664eb1SMatthew G. Knepley . -dm_coord_map <mapname> - Select a builtin coordinate map 845be664eb1SMatthew G. Knepley . -dm_coord_map_params <p0,p1,p2,...> - Set coordinate mapping parameters 8469318fe57SMatthew G. Knepley . -dm_plex_box_faces <m,n,p> - Number of faces along each dimension 8479318fe57SMatthew G. Knepley . -dm_plex_box_lower <x,y,z> - Specify lower-left-bottom coordinates for the box 8489318fe57SMatthew G. Knepley . -dm_plex_box_upper <x,y,z> - Specify upper-right-top coordinates for the box 849bb7acecfSBarry Smith . -dm_plex_box_bd <bx,by,bz> - Specify the `DMBoundaryType` for each direction 8509318fe57SMatthew G. Knepley . -dm_plex_sphere_radius <r> - The sphere radius 8519318fe57SMatthew G. Knepley . -dm_plex_ball_radius <r> - Radius of the ball 8529318fe57SMatthew G. Knepley . -dm_plex_cylinder_bd <bz> - Boundary type in the z direction 8539318fe57SMatthew G. Knepley . -dm_plex_cylinder_num_wedges <n> - Number of wedges around the cylinder 854bdf63967SMatthew G. Knepley . -dm_plex_reorder <order> - Reorder the mesh using the specified algorithm 8559318fe57SMatthew G. Knepley . -dm_refine_pre <n> - The number of refinements before distribution 8569318fe57SMatthew G. Knepley . -dm_refine_uniform_pre <bool> - Flag for uniform refinement before distribution 8579318fe57SMatthew G. Knepley . -dm_refine_volume_limit_pre <v> - The maximum cell volume after refinement before distribution 8589318fe57SMatthew G. Knepley . -dm_refine <n> - The number of refinements after distribution 859bdf63967SMatthew G. Knepley . -dm_extrude <l> - Activate extrusion and specify the number of layers to extrude 860d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thickness <t> - The total thickness of extruded layers 861d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_use_tensor <bool> - Use tensor cells when extruding 862d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_symmetric <bool> - Extrude layers symmetrically about the surface 863d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_normal <n0,...,nd> - Specify the extrusion direction 864d410b0cfSMatthew G. Knepley . -dm_plex_transform_extrude_thicknesses <t0,...,tl> - Specify thickness of each layer 865909dfd52SMatthew G. Knepley . -dm_plex_create_fv_ghost_cells - Flag to create finite volume ghost cells on the boundary 866909dfd52SMatthew G. Knepley . -dm_plex_fv_ghost_cells_label <name> - Label name for ghost cells boundary 8679318fe57SMatthew G. Knepley . -dm_distribute <bool> - Flag to redistribute a mesh among processes 8689318fe57SMatthew G. Knepley . -dm_distribute_overlap <n> - The size of the overlap halo 8699318fe57SMatthew G. Knepley . -dm_plex_adj_cone <bool> - Set adjacency direction 87020f4b53cSBarry Smith . -dm_plex_adj_closure <bool> - Set adjacency size 871d2b2dc1eSMatthew G. Knepley . -dm_plex_use_ceed <bool> - Use LibCEED as the FEM backend 87220f4b53cSBarry Smith . -dm_plex_check_symmetry - Check that the adjacency information in the mesh is symmetric - `DMPlexCheckSymmetry()` 873bb7acecfSBarry Smith . -dm_plex_check_skeleton - Check that each cell has the correct number of vertices (only for homogeneous simplex or tensor meshes) - `DMPlexCheckSkeleton()` 874bb7acecfSBarry Smith . -dm_plex_check_faces - Check that the faces of each cell give a vertex order this is consistent with what we expect from the cell type - `DMPlexCheckFaces()` 875bb7acecfSBarry Smith . -dm_plex_check_geometry - Check that cells have positive volume - `DMPlexCheckGeometry()` 876bb7acecfSBarry Smith . -dm_plex_check_pointsf - Check some necessary conditions for `PointSF` - `DMPlexCheckPointSF()` 877bb7acecfSBarry Smith . -dm_plex_check_interface_cones - Check points on inter-partition interfaces have conforming order of cone points - `DMPlexCheckInterfaceCones()` 878384a6580SVaclav Hapla - -dm_plex_check_all - Perform all the checks above 879d7bf68aeSBarry Smith 88095eb5ee5SVaclav Hapla Level: intermediate 88195eb5ee5SVaclav Hapla 8821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 883bb7acecfSBarry Smith `DMPlexCheckSymmetry()`, `DMPlexCheckSkeleton()`, `DMPlexCheckFaces()`, `DMPlexCheckGeometry()`, `DMPlexCheckPointSF()`, `DMPlexCheckInterfaceCones()`, 88460225df5SJacob Faibussowitsch `DMSetOptionsPrefix()`, `DMType`, `DMPLEX`, `DMDA` 885d7bf68aeSBarry Smith @*/ 886d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFromOptions(DM dm) 887d71ae5a4SJacob Faibussowitsch { 8887781c08eSBarry Smith char typeName[256]; 889ca266f36SBarry Smith PetscBool flg; 890d7bf68aeSBarry Smith 891d7bf68aeSBarry Smith PetscFunctionBegin; 892171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89349be4549SMatthew G. Knepley dm->setfromoptionscalled = PETSC_TRUE; 8949566063dSJacob Faibussowitsch if (dm->sf) PetscCall(PetscSFSetFromOptions(dm->sf)); 8959566063dSJacob Faibussowitsch if (dm->sectionSF) PetscCall(PetscSFSetFromOptions(dm->sectionSF)); 896dd4c3f67SMatthew G. Knepley if (dm->coordinates[0].dm) PetscCall(DMSetFromOptions(dm->coordinates[0].dm)); 897d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)dm); 8989566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-dm_preallocate_only", "only preallocate matrix, but do not set column indices", "DMSetMatrixPreallocateOnly", dm->prealloc_only, &dm->prealloc_only, NULL)); 8999566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_vec_type", "Vector type used for created vectors", "DMSetVecType", VecList, dm->vectype, typeName, 256, &flg)); 9001baa6e33SBarry Smith if (flg) PetscCall(DMSetVecType(dm, typeName)); 9019566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-dm_mat_type", "Matrix type used for created matrices", "DMSetMatType", MatList, dm->mattype ? dm->mattype : typeName, typeName, sizeof(typeName), &flg)); 9021baa6e33SBarry Smith if (flg) PetscCall(DMSetMatType(dm, typeName)); 903863027abSJed Brown PetscCall(PetscOptionsEnum("-dm_blocking_type", "Topological point or field node blocking", "DMSetBlockingType", DMBlockingTypes, (PetscEnum)dm->blocking_type, (PetscEnum *)&dm->blocking_type, NULL)); 9049566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-dm_is_coloring_type", "Global or local coloring of Jacobian", "DMSetISColoringType", ISColoringTypes, (PetscEnum)dm->coloringtype, (PetscEnum *)&dm->coloringtype, NULL)); 9059566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-dm_bind_below", "Set the size threshold (in entries) below which the Vec is bound to the CPU", "VecBindToCPU", dm->bind_below, &dm->bind_below, &flg)); 906eb9d3e4dSMatthew G. Knepley PetscCall(PetscOptionsBool("-dm_ignore_perm_output", "Ignore the local section permutation on output", "DMGetOutputDM", dm->ignorePermOutput, &dm->ignorePermOutput, NULL)); 907dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, setfromoptions, PetscOptionsObject); 908f9ba7244SBarry Smith /* process any options handlers added with PetscObjectAddOptionsHandler() */ 909dbbe0bcdSBarry Smith PetscCall(PetscObjectProcessOptionsHandlers((PetscObject)dm, PetscOptionsObject)); 910d0609cedSBarry Smith PetscOptionsEnd(); 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 912d7bf68aeSBarry Smith } 913d7bf68aeSBarry Smith 914fc9bc008SSatish Balay /*@C 915bb7acecfSBarry Smith DMViewFromOptions - View a `DM` in a particular way based on a request in the options database 916fe2efc57SMark 91720f4b53cSBarry Smith Collective 918fe2efc57SMark 919fe2efc57SMark Input Parameters: 920bb7acecfSBarry Smith + dm - the `DM` object 92120f4b53cSBarry Smith . obj - optional object that provides the prefix for the options database (if `NULL` then the prefix in obj is used) 92260225df5SJacob Faibussowitsch - name - option string that is used to activate viewing 923fe2efc57SMark 924fe2efc57SMark Level: intermediate 925bb7acecfSBarry Smith 926bb7acecfSBarry Smith Note: 927bb7acecfSBarry Smith See `PetscObjectViewFromOptions()` for a list of values that can be provided in the options database to determine how the `DM` is viewed 928bb7acecfSBarry Smith 92960225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `PetscObjectViewFromOptions()`, `DMCreate()` 930fe2efc57SMark @*/ 931d71ae5a4SJacob Faibussowitsch PetscErrorCode DMViewFromOptions(DM dm, PetscObject obj, const char name[]) 932d71ae5a4SJacob Faibussowitsch { 933fe2efc57SMark PetscFunctionBegin; 934fe2efc57SMark PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9359566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)dm, obj, name)); 9363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 937fe2efc57SMark } 938fe2efc57SMark 939fe2efc57SMark /*@C 940bb7acecfSBarry Smith DMView - Views a `DM`. Depending on the `PetscViewer` and its `PetscViewerFormat` it may print some ASCII information about the `DM` to the screen or a file or 941bb7acecfSBarry Smith save the `DM` in a binary file to be loaded later or create a visualization of the `DM` 94247c6ae99SBarry Smith 94320f4b53cSBarry Smith Collective 94447c6ae99SBarry Smith 945d8d19677SJose E. Roman Input Parameters: 946bb7acecfSBarry Smith + dm - the `DM` object to view 94747c6ae99SBarry Smith - v - the viewer 94847c6ae99SBarry Smith 94920f4b53cSBarry Smith Level: beginner 95020f4b53cSBarry Smith 951*73ff1848SBarry Smith Note: 952bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` as the `PetscViewerFormat` one can save multiple `DMPLEX` 953bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 954bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 955cd7e8a5eSksagiyam 9561cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewer`, `PetscViewerFormat`, `PetscViewerSetFormat()`, `DMDestroy()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMLoad()`, `PetscObjectSetName()` 95747c6ae99SBarry Smith @*/ 958d71ae5a4SJacob Faibussowitsch PetscErrorCode DMView(DM dm, PetscViewer v) 959d71ae5a4SJacob Faibussowitsch { 96032c0f0efSBarry Smith PetscBool isbinary; 96176a8abe0SBarry Smith PetscMPIInt size; 96276a8abe0SBarry Smith PetscViewerFormat format; 96347c6ae99SBarry Smith 96447c6ae99SBarry Smith PetscFunctionBegin; 965171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 96648a46eb9SPierre Jolivet if (!v) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)dm), &v)); 967b1b135c8SBarry Smith PetscValidHeaderSpecific(v, PETSC_VIEWER_CLASSID, 2); 96874903a4fSStefano Zampini /* Ideally, we would like to have this test on. 96974903a4fSStefano Zampini However, it currently breaks socket viz via GLVis. 97074903a4fSStefano Zampini During DMView(parallel_mesh,glvis_viewer), each 97174903a4fSStefano Zampini process opens a sequential ASCII socket to visualize 97274903a4fSStefano Zampini the local mesh, and PetscObjectView(dm,local_socket) 97374903a4fSStefano Zampini is internally called inside VecView_GLVis, incurring 97474903a4fSStefano Zampini in an error here */ 97574903a4fSStefano Zampini /* PetscCheckSameComm(dm,1,v,2); */ 9769566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckWritable(v)); 977b1b135c8SBarry Smith 9789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(v, &format)); 9799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 9803ba16761SJacob Faibussowitsch if (size == 1 && format == PETSC_VIEWER_LOAD_BALANCE) PetscFunctionReturn(PETSC_SUCCESS); 9819566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)dm, v)); 9829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)v, PETSCVIEWERBINARY, &isbinary)); 98332c0f0efSBarry Smith if (isbinary) { 98455849f57SBarry Smith PetscInt classid = DM_FILE_CLASSID; 98532c0f0efSBarry Smith char type[256]; 98632c0f0efSBarry Smith 9879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, &classid, 1, PETSC_INT)); 988c6a7a370SJeremy L Thompson PetscCall(PetscStrncpy(type, ((PetscObject)dm)->type_name, sizeof(type))); 9899566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(v, type, 256, PETSC_CHAR)); 99032c0f0efSBarry Smith } 991dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, view, v); 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 99347c6ae99SBarry Smith } 99447c6ae99SBarry Smith 99547c6ae99SBarry Smith /*@ 996bb7acecfSBarry Smith DMCreateGlobalVector - Creates a global vector from a `DM` object. A global vector is a parallel vector that has no duplicate values shared between MPI ranks, 997bb7acecfSBarry Smith that is it has no ghost locations. 99847c6ae99SBarry Smith 99920f4b53cSBarry Smith Collective 100047c6ae99SBarry Smith 100147c6ae99SBarry Smith Input Parameter: 1002bb7acecfSBarry Smith . dm - the `DM` object 100347c6ae99SBarry Smith 100447c6ae99SBarry Smith Output Parameter: 100547c6ae99SBarry Smith . vec - the global vector 100647c6ae99SBarry Smith 1007073dac72SJed Brown Level: beginner 100847c6ae99SBarry Smith 10091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateLocalVector()`, `DMGetGlobalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1010bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 101147c6ae99SBarry Smith @*/ 1012d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateGlobalVector(DM dm, Vec *vec) 1013d71ae5a4SJacob Faibussowitsch { 101447c6ae99SBarry Smith PetscFunctionBegin; 1015171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10164f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1017dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createglobalvector, vec); 101876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1019c6b011d8SStefano Zampini DM vdm; 1020c6b011d8SStefano Zampini 10219566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10227a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1023c6b011d8SStefano Zampini } 10243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102547c6ae99SBarry Smith } 102647c6ae99SBarry Smith 102747c6ae99SBarry Smith /*@ 1028bb7acecfSBarry Smith DMCreateLocalVector - Creates a local vector from a `DM` object. 102947c6ae99SBarry Smith 103047c6ae99SBarry Smith Not Collective 103147c6ae99SBarry Smith 103247c6ae99SBarry Smith Input Parameter: 1033bb7acecfSBarry Smith . dm - the `DM` object 103447c6ae99SBarry Smith 103547c6ae99SBarry Smith Output Parameter: 103647c6ae99SBarry Smith . vec - the local vector 103747c6ae99SBarry Smith 1038073dac72SJed Brown Level: beginner 103947c6ae99SBarry Smith 104020f4b53cSBarry Smith Note: 1041bb7acecfSBarry Smith A local vector usually has ghost locations that contain values that are owned by different MPI ranks. A global vector has no ghost locations. 1042bb7acecfSBarry Smith 10431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `Vec`, `DMCreateGlobalVector()`, `DMGetLocalVector()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()` 1044bb7acecfSBarry Smith `DMGlobalToLocalBegin()`, `DMGlobalToLocalEnd()` 104547c6ae99SBarry Smith @*/ 1046d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLocalVector(DM dm, Vec *vec) 1047d71ae5a4SJacob Faibussowitsch { 104847c6ae99SBarry Smith PetscFunctionBegin; 1049171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10504f572ea9SToby Isaac PetscAssertPointer(vec, 2); 1051dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalvector, vec); 105276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1053c6b011d8SStefano Zampini DM vdm; 1054c6b011d8SStefano Zampini 10559566063dSJacob Faibussowitsch PetscCall(VecGetDM(*vec, &vdm)); 10567a8be351SBarry Smith PetscCheck(vdm, PETSC_COMM_SELF, PETSC_ERR_LIB, "DM type '%s' did not attach the DM to the vector", ((PetscObject)dm)->type_name); 1057c6b011d8SStefano Zampini } 10583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105947c6ae99SBarry Smith } 106047c6ae99SBarry Smith 10611411c6eeSJed Brown /*@ 1062bb7acecfSBarry Smith DMGetLocalToGlobalMapping - Accesses the local-to-global mapping in a `DM`. 10631411c6eeSJed Brown 106420f4b53cSBarry Smith Collective 10651411c6eeSJed Brown 10661411c6eeSJed Brown Input Parameter: 1067bb7acecfSBarry Smith . dm - the `DM` that provides the mapping 10681411c6eeSJed Brown 10691411c6eeSJed Brown Output Parameter: 10701411c6eeSJed Brown . ltog - the mapping 10711411c6eeSJed Brown 1072bb7acecfSBarry Smith Level: advanced 10731411c6eeSJed Brown 10741411c6eeSJed Brown Notes: 1075bb7acecfSBarry Smith The global to local mapping allows one to set values into the global vector or matrix using `VecSetValuesLocal()` and `MatSetValuesLocal()` 10761411c6eeSJed Brown 1077bb7acecfSBarry Smith Vectors obtained with `DMCreateGlobalVector()` and matrices obtained with `DMCreateMatrix()` already contain the global mapping so you do 1078bb7acecfSBarry Smith need to use this function with those objects. 1079bb7acecfSBarry Smith 1080bb7acecfSBarry Smith This mapping can then be used by `VecSetLocalToGlobalMapping()` or `MatSetLocalToGlobalMapping()`. 1081bb7acecfSBarry Smith 108260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `VecSetLocalToGlobalMapping()`, `MatSetLocalToGlobalMapping()`, 1083bb7acecfSBarry Smith `DMCreateMatrix()` 10841411c6eeSJed Brown @*/ 1085d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalToGlobalMapping(DM dm, ISLocalToGlobalMapping *ltog) 1086d71ae5a4SJacob Faibussowitsch { 10870be3e97aSMatthew G. Knepley PetscInt bs = -1, bsLocal[2], bsMinMax[2]; 10881411c6eeSJed Brown 10891411c6eeSJed Brown PetscFunctionBegin; 10901411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 10914f572ea9SToby Isaac PetscAssertPointer(ltog, 2); 10921411c6eeSJed Brown if (!dm->ltogmap) { 109337d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 109437d0c07bSMatthew G Knepley 10959566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 109637d0c07bSMatthew G Knepley if (section) { 1097a974ec88SMatthew G. Knepley const PetscInt *cdofs; 109837d0c07bSMatthew G Knepley PetscInt *ltog; 1099ccf3bd66SMatthew G. Knepley PetscInt pStart, pEnd, n, p, k, l; 110037d0c07bSMatthew G Knepley 11019566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 11029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(section, &pStart, &pEnd)); 11039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(section, &n)); 11049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, <og)); /* We want the local+overlap size */ 110537d0c07bSMatthew G Knepley for (p = pStart, l = 0; p < pEnd; ++p) { 1106e6befd46SJed Brown PetscInt bdof, cdof, dof, off, c, cind; 110737d0c07bSMatthew G Knepley 110837d0c07bSMatthew G Knepley /* Should probably use constrained dofs */ 11099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(section, p, &dof)); 11109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(section, p, &cdof)); 11119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(section, p, &cdofs)); 11129566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &off)); 11131a7dc684SMatthew G. Knepley /* If you have dofs, and constraints, and they are unequal, we set the blocksize to 1 */ 11141a7dc684SMatthew G. Knepley bdof = cdof && (dof - cdof) ? 1 : dof; 1115ad540459SPierre Jolivet if (dof) bs = bs < 0 ? bdof : PetscGCD(bs, bdof); 11165227eafbSStefano Zampini 1117e6befd46SJed Brown for (c = 0, cind = 0; c < dof; ++c, ++l) { 11185227eafbSStefano Zampini if (cind < cdof && c == cdofs[cind]) { 1119e6befd46SJed Brown ltog[l] = off < 0 ? off - c : -(off + c + 1); 1120e6befd46SJed Brown cind++; 1121e6befd46SJed Brown } else { 11225227eafbSStefano Zampini ltog[l] = (off < 0 ? -(off + 1) : off) + c - cind; 1123e6befd46SJed Brown } 112437d0c07bSMatthew G Knepley } 112537d0c07bSMatthew G Knepley } 1126bff27382SMatthew G. Knepley /* Must have same blocksize on all procs (some might have no points) */ 11279371c9d4SSatish Balay bsLocal[0] = bs < 0 ? PETSC_MAX_INT : bs; 11289371c9d4SSatish Balay bsLocal[1] = bs; 11299566063dSJacob Faibussowitsch PetscCall(PetscGlobalMinMaxInt(PetscObjectComm((PetscObject)dm), bsLocal, bsMinMax)); 11309371c9d4SSatish Balay if (bsMinMax[0] != bsMinMax[1]) { 11319371c9d4SSatish Balay bs = 1; 11329371c9d4SSatish Balay } else { 11339371c9d4SSatish Balay bs = bsMinMax[0]; 11349371c9d4SSatish Balay } 11357591dbb2SMatthew G. Knepley bs = bs < 0 ? 1 : bs; 11367591dbb2SMatthew G. Knepley /* Must reduce indices by blocksize */ 1137ccf3bd66SMatthew G. Knepley if (bs > 1) { 1138ca469d19SJed Brown for (l = 0, k = 0; l < n; l += bs, ++k) { 1139ca469d19SJed Brown // Integer division of negative values truncates toward zero(!), not toward negative infinity 1140ca469d19SJed Brown ltog[k] = ltog[l] >= 0 ? ltog[l] / bs : -(-(ltog[l] + 1) / bs + 1); 1141ca469d19SJed Brown } 1142ccf3bd66SMatthew G. Knepley n /= bs; 1143ccf3bd66SMatthew G. Knepley } 11449566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)dm), bs, n, ltog, PETSC_OWN_POINTER, &dm->ltogmap)); 1145dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, getlocaltoglobalmapping); 114637d0c07bSMatthew G Knepley } 11471411c6eeSJed Brown *ltog = dm->ltogmap; 11483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11491411c6eeSJed Brown } 11501411c6eeSJed Brown 11511411c6eeSJed Brown /*@ 1152bb7acecfSBarry Smith DMGetBlockSize - Gets the inherent block size associated with a `DM` 11531411c6eeSJed Brown 11541411c6eeSJed Brown Not Collective 11551411c6eeSJed Brown 11561411c6eeSJed Brown Input Parameter: 1157bb7acecfSBarry Smith . dm - the `DM` with block structure 11581411c6eeSJed Brown 11591411c6eeSJed Brown Output Parameter: 11601411c6eeSJed Brown . bs - the block size, 1 implies no exploitable block structure 11611411c6eeSJed Brown 11621411c6eeSJed Brown Level: intermediate 11631411c6eeSJed Brown 1164*73ff1848SBarry Smith Notes: 1165bb7acecfSBarry Smith This might be the number of degrees of freedom at each grid point for a structured grid. 1166bb7acecfSBarry Smith 1167bb7acecfSBarry Smith Complex `DM` that represent multiphysics or staggered grids or mixed-methods do not generally have a single inherent block size, but 1168bb7acecfSBarry Smith rather different locations in the vectors may have a different block size. 1169bb7acecfSBarry Smith 11701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISCreateBlock()`, `VecSetBlockSize()`, `MatSetBlockSize()`, `DMGetLocalToGlobalMapping()` 11711411c6eeSJed Brown @*/ 1172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBlockSize(DM dm, PetscInt *bs) 1173d71ae5a4SJacob Faibussowitsch { 11741411c6eeSJed Brown PetscFunctionBegin; 11751411c6eeSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 11764f572ea9SToby Isaac PetscAssertPointer(bs, 2); 11777a8be351SBarry Smith PetscCheck(dm->bs >= 1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "DM does not have enough information to provide a block size yet"); 11781411c6eeSJed Brown *bs = dm->bs; 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11801411c6eeSJed Brown } 11811411c6eeSJed Brown 118248eeb7c8SBarry Smith /*@C 1183bb7acecfSBarry Smith DMCreateInterpolation - Gets the interpolation matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1184bb7acecfSBarry Smith `DMCreateGlobalVector()` on the coarse `DM` to similar vectors on the fine grid `DM`. 118547c6ae99SBarry Smith 118620f4b53cSBarry Smith Collective 118747c6ae99SBarry Smith 1188d8d19677SJose E. Roman Input Parameters: 1189bb7acecfSBarry Smith + dmc - the `DM` object 1190bb7acecfSBarry Smith - dmf - the second, finer `DM` object 119147c6ae99SBarry Smith 1192d8d19677SJose E. Roman Output Parameters: 119347c6ae99SBarry Smith + mat - the interpolation 1194bb7acecfSBarry Smith - vec - the scaling (optional), see `DMCreateInterpolationScale()` 119547c6ae99SBarry Smith 119647c6ae99SBarry Smith Level: developer 119747c6ae99SBarry Smith 119895452b02SPatrick Sanan Notes: 1199bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1200bb7acecfSBarry Smith DMCoarsen(). The coordinates set into the `DMDA` are completely ignored in computing the interpolation. 1201d52bd9f3SBarry Smith 1202bb7acecfSBarry Smith For `DMDA` objects you can use this interpolation (more precisely the interpolation from the `DMGetCoordinateDM()`) to interpolate the mesh coordinate 1203bb7acecfSBarry Smith vectors EXCEPT in the periodic case where it does not make sense since the coordinate vectors are not periodic. 120485afcc9aSBarry Smith 12051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolationScale()` 120647c6ae99SBarry Smith @*/ 1207d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolation(DM dmc, DM dmf, Mat *mat, Vec *vec) 1208d71ae5a4SJacob Faibussowitsch { 120947c6ae99SBarry Smith PetscFunctionBegin; 1210a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1211a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12124f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInterpolation, dmc, dmf, 0, 0)); 1214dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createinterpolation, dmf, mat, vec); 12159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInterpolation, dmc, dmf, 0, 0)); 12163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121747c6ae99SBarry Smith } 121847c6ae99SBarry Smith 12193ad4599aSBarry Smith /*@ 1220a4e35b19SJacob Faibussowitsch DMCreateInterpolationScale - Forms L = 1/(R*1) where 1 is the vector of all ones, and R is 1221a4e35b19SJacob Faibussowitsch the transpose of the interpolation between the `DM`. 12222ed6491fSPatrick Sanan 12232ed6491fSPatrick Sanan Input Parameters: 1224bb7acecfSBarry Smith + dac - `DM` that defines a coarse mesh 1225bb7acecfSBarry Smith . daf - `DM` that defines a fine mesh 12262ed6491fSPatrick Sanan - mat - the restriction (or interpolation operator) from fine to coarse 12272ed6491fSPatrick Sanan 12282ed6491fSPatrick Sanan Output Parameter: 12292ed6491fSPatrick Sanan . scale - the scaled vector 12302ed6491fSPatrick Sanan 1231bb7acecfSBarry Smith Level: advanced 12322ed6491fSPatrick Sanan 1233*73ff1848SBarry Smith Note: 1234a4e35b19SJacob Faibussowitsch xcoarse = diag(L)*R*xfine preserves scale and is thus suitable for state (versus residual) 1235a4e35b19SJacob Faibussowitsch restriction. In other words xcoarse is the coarse representation of xfine. 1236a4e35b19SJacob Faibussowitsch 1237*73ff1848SBarry Smith Developer Note: 1238bb7acecfSBarry Smith If the fine-scale `DMDA` has the -dm_bind_below option set to true, then `DMCreateInterpolationScale()` calls `MatSetBindingPropagates()` 1239e9c74fd6SRichard Tran Mills on the restriction/interpolation operator to set the bindingpropagates flag to true. 1240e9c74fd6SRichard Tran Mills 124160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `MatRestrict()`, `MatInterpolate()`, `DMCreateInterpolation()`, `DMCreateRestriction()`, `DMCreateGlobalVector()` 12422ed6491fSPatrick Sanan @*/ 1243d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInterpolationScale(DM dac, DM daf, Mat mat, Vec *scale) 1244d71ae5a4SJacob Faibussowitsch { 12452ed6491fSPatrick Sanan Vec fine; 12462ed6491fSPatrick Sanan PetscScalar one = 1.0; 12479704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 1248e9c74fd6SRichard Tran Mills PetscBool bindingpropagates, isbound; 12499704db99SRichard Tran Mills #endif 12502ed6491fSPatrick Sanan 12512ed6491fSPatrick Sanan PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(daf, &fine)); 12539566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(dac, scale)); 12549566063dSJacob Faibussowitsch PetscCall(VecSet(fine, one)); 12559704db99SRichard Tran Mills #if defined(PETSC_HAVE_CUDA) 12569704db99SRichard Tran Mills /* If the 'fine' Vec is bound to the CPU, it makes sense to bind 'mat' as well. 12579704db99SRichard Tran Mills * Note that we only do this for the CUDA case, right now, but if we add support for MatMultTranspose() via ViennaCL, 12589704db99SRichard Tran Mills * we'll need to do it for that case, too.*/ 12599566063dSJacob Faibussowitsch PetscCall(VecGetBindingPropagates(fine, &bindingpropagates)); 1260e9c74fd6SRichard Tran Mills if (bindingpropagates) { 12619566063dSJacob Faibussowitsch PetscCall(MatSetBindingPropagates(mat, PETSC_TRUE)); 12629566063dSJacob Faibussowitsch PetscCall(VecBoundToCPU(fine, &isbound)); 12639566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mat, isbound)); 126483aa49f4SRichard Tran Mills } 12659704db99SRichard Tran Mills #endif 12669566063dSJacob Faibussowitsch PetscCall(MatRestrict(mat, fine, *scale)); 12679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&fine)); 12689566063dSJacob Faibussowitsch PetscCall(VecReciprocal(*scale)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12702ed6491fSPatrick Sanan } 12712ed6491fSPatrick Sanan 12722ed6491fSPatrick Sanan /*@ 1273bb7acecfSBarry Smith DMCreateRestriction - Gets restriction matrix between two `DM` objects. The resulting matrix map degrees of freedom in the vector obtained by 1274bb7acecfSBarry Smith `DMCreateGlobalVector()` on the fine `DM` to similar vectors on the coarse grid `DM`. 12753ad4599aSBarry Smith 127620f4b53cSBarry Smith Collective 12773ad4599aSBarry Smith 1278d8d19677SJose E. Roman Input Parameters: 1279bb7acecfSBarry Smith + dmc - the `DM` object 1280bb7acecfSBarry Smith - dmf - the second, finer `DM` object 12813ad4599aSBarry Smith 12823ad4599aSBarry Smith Output Parameter: 12833ad4599aSBarry Smith . mat - the restriction 12843ad4599aSBarry Smith 12853ad4599aSBarry Smith Level: developer 12863ad4599aSBarry Smith 1287bb7acecfSBarry Smith Note: 1288bb7acecfSBarry Smith This only works for `DMSTAG`. For many situations either the transpose of the operator obtained with `DMCreateInterpolation()` or that 1289bb7acecfSBarry Smith matrix multiplied by the vector obtained with `DMCreateInterpolationScale()` provides the desired object. 12903ad4599aSBarry Smith 12911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRestrict()`, `DMInterpolate()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateInterpolation()` 12923ad4599aSBarry Smith @*/ 1293d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateRestriction(DM dmc, DM dmf, Mat *mat) 1294d71ae5a4SJacob Faibussowitsch { 12953ad4599aSBarry Smith PetscFunctionBegin; 1296a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1297a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 12984f572ea9SToby Isaac PetscAssertPointer(mat, 3); 12999566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateRestriction, dmc, dmf, 0, 0)); 1300dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createrestriction, dmf, mat); 13019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateRestriction, dmc, dmf, 0, 0)); 13023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13033ad4599aSBarry Smith } 13043ad4599aSBarry Smith 130547c6ae99SBarry Smith /*@ 1306a4e35b19SJacob Faibussowitsch DMCreateInjection - Gets injection matrix between two `DM` objects. 130747c6ae99SBarry Smith 130820f4b53cSBarry Smith Collective 130947c6ae99SBarry Smith 1310d8d19677SJose E. Roman Input Parameters: 1311bb7acecfSBarry Smith + dac - the `DM` object 1312bb7acecfSBarry Smith - daf - the second, finer `DM` object 131347c6ae99SBarry Smith 131447c6ae99SBarry Smith Output Parameter: 13156dbf9973SLawrence Mitchell . mat - the injection 131647c6ae99SBarry Smith 131747c6ae99SBarry Smith Level: developer 131847c6ae99SBarry Smith 1319a4e35b19SJacob Faibussowitsch Notes: 1320a4e35b19SJacob Faibussowitsch This is an operator that applied to a vector obtained with `DMCreateGlobalVector()` on the 1321a4e35b19SJacob Faibussowitsch fine grid maps the values to a vector on the vector on the coarse `DM` by simply selecting 1322a4e35b19SJacob Faibussowitsch the values on the coarse grid points. This compares to the operator obtained by 1323a4e35b19SJacob Faibussowitsch `DMCreateRestriction()` or the transpose of the operator obtained by 1324a4e35b19SJacob Faibussowitsch `DMCreateInterpolation()` that uses a "local weighted average" of the values around the 1325a4e35b19SJacob Faibussowitsch coarse grid point as the coarse grid value. 1326a4e35b19SJacob Faibussowitsch 1327bb7acecfSBarry Smith For `DMDA` objects this only works for "uniform refinement", that is the refined mesh was obtained `DMRefine()` or the coarse mesh was obtained by 1328bb7acecfSBarry Smith `DMCoarsen()`. The coordinates set into the `DMDA` are completely ignored in computing the injection. 132985afcc9aSBarry Smith 13301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateInterpolation()`, 1331bb7acecfSBarry Smith `DMCreateRestriction()`, `MatRestrict()`, `MatInterpolate()` 133247c6ae99SBarry Smith @*/ 1333d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateInjection(DM dac, DM daf, Mat *mat) 1334d71ae5a4SJacob Faibussowitsch { 133547c6ae99SBarry Smith PetscFunctionBegin; 1336a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dac, DM_CLASSID, 1); 1337a5bc1bf3SBarry Smith PetscValidHeaderSpecific(daf, DM_CLASSID, 2); 13384f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateInjection, dac, daf, 0, 0)); 1340dbbe0bcdSBarry Smith PetscUseTypeMethod(dac, createinjection, daf, mat); 13419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateInjection, dac, daf, 0, 0)); 13423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 134347c6ae99SBarry Smith } 134447c6ae99SBarry Smith 1345b412c318SBarry Smith /*@ 1346bb7acecfSBarry Smith DMCreateMassMatrix - Gets the mass matrix between two `DM` objects, M_ij = \int \phi_i \psi_j where the \phi are Galerkin basis functions for a 1347bb7acecfSBarry Smith a Galerkin finite element model on the `DM` 1348bd041c0cSMatthew G. Knepley 134920f4b53cSBarry Smith Collective 1350bd041c0cSMatthew G. Knepley 1351d8d19677SJose E. Roman Input Parameters: 1352bb7acecfSBarry Smith + dmc - the target `DM` object 1353bb7acecfSBarry Smith - dmf - the source `DM` object 1354bd041c0cSMatthew G. Knepley 1355bd041c0cSMatthew G. Knepley Output Parameter: 1356b4937a87SMatthew G. Knepley . mat - the mass matrix 1357bd041c0cSMatthew G. Knepley 1358bd041c0cSMatthew G. Knepley Level: developer 1359bd041c0cSMatthew G. Knepley 1360bb7acecfSBarry Smith Notes: 1361bb7acecfSBarry Smith For `DMPLEX` the finite element model for the `DM` must have been already provided. 1362bb7acecfSBarry Smith 136320f4b53cSBarry Smith if `dmc` is `dmf` then x^t M x is an approximation to the L2 norm of the vector x which is obtained by `DMCreateGlobalVector()` 1364bb7acecfSBarry Smith 136542747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrixLumped()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1366bd041c0cSMatthew G. Knepley @*/ 1367d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrix(DM dmc, DM dmf, Mat *mat) 1368d71ae5a4SJacob Faibussowitsch { 1369bd041c0cSMatthew G. Knepley PetscFunctionBegin; 1370b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmc, DM_CLASSID, 1); 1371b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dmf, DM_CLASSID, 2); 13724f572ea9SToby Isaac PetscAssertPointer(mat, 3); 13735b8ffe73SMark Adams PetscCall(PetscLogEventBegin(DM_CreateMassMatrix, 0, 0, 0, 0)); 1374dbbe0bcdSBarry Smith PetscUseTypeMethod(dmc, createmassmatrix, dmf, mat); 13755b8ffe73SMark Adams PetscCall(PetscLogEventEnd(DM_CreateMassMatrix, 0, 0, 0, 0)); 13763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1377b4937a87SMatthew G. Knepley } 1378b4937a87SMatthew G. Knepley 1379b4937a87SMatthew G. Knepley /*@ 1380bb7acecfSBarry Smith DMCreateMassMatrixLumped - Gets the lumped mass matrix for a given `DM` 1381b4937a87SMatthew G. Knepley 138220f4b53cSBarry Smith Collective 1383b4937a87SMatthew G. Knepley 1384b4937a87SMatthew G. Knepley Input Parameter: 1385bb7acecfSBarry Smith . dm - the `DM` object 1386b4937a87SMatthew G. Knepley 1387b4937a87SMatthew G. Knepley Output Parameter: 1388bb7acecfSBarry Smith . lm - the lumped mass matrix, which is a diagonal matrix, represented as a vector 1389b4937a87SMatthew G. Knepley 1390b4937a87SMatthew G. Knepley Level: developer 1391b4937a87SMatthew G. Knepley 1392bb7acecfSBarry Smith Note: 1393bb7acecfSBarry Smith See `DMCreateMassMatrix()` for how to create the non-lumped version of the mass matrix. 1394bb7acecfSBarry Smith 139560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateMassMatrix()`, `DMCreateMatrix()`, `DMRefine()`, `DMCoarsen()`, `DMCreateRestriction()`, `DMCreateInterpolation()`, `DMCreateInjection()` 1396b4937a87SMatthew G. Knepley @*/ 1397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMassMatrixLumped(DM dm, Vec *lm) 1398d71ae5a4SJacob Faibussowitsch { 1399b4937a87SMatthew G. Knepley PetscFunctionBegin; 1400b4937a87SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14014f572ea9SToby Isaac PetscAssertPointer(lm, 2); 1402dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createmassmatrixlumped, lm); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1404bd041c0cSMatthew G. Knepley } 1405bd041c0cSMatthew G. Knepley 1406bd041c0cSMatthew G. Knepley /*@ 1407bb7acecfSBarry Smith DMCreateColoring - Gets coloring of a graph associated with the `DM`. Often the graph represents the operator matrix associated with the discretization 1408bb7acecfSBarry Smith of a PDE on the `DM`. 140947c6ae99SBarry Smith 141020f4b53cSBarry Smith Collective 141147c6ae99SBarry Smith 1412d8d19677SJose E. Roman Input Parameters: 1413bb7acecfSBarry Smith + dm - the `DM` object 1414bb7acecfSBarry Smith - ctype - `IS_COLORING_LOCAL` or `IS_COLORING_GLOBAL` 141547c6ae99SBarry Smith 141647c6ae99SBarry Smith Output Parameter: 141747c6ae99SBarry Smith . coloring - the coloring 141847c6ae99SBarry Smith 14191bf8429eSBarry Smith Level: developer 14201bf8429eSBarry Smith 1421ec5066bdSBarry Smith Notes: 1422bb7acecfSBarry Smith Coloring of matrices can also be computed directly from the sparse matrix nonzero structure via the `MatColoring` object or from the mesh from which the 1423bb7acecfSBarry Smith matrix comes from (what this function provides). In general using the mesh produces a more optimal coloring (fewer colors). 1424ec5066bdSBarry Smith 1425bb7acecfSBarry Smith This produces a coloring with the distance of 2, see `MatSetColoringDistance()` which can be used for efficiently computing Jacobians with `MatFDColoringCreate()` 14261bf8429eSBarry Smith For `DMDA` in three dimensions with periodic boundary conditions the number of grid points in each dimension must be divisible by 2*stencil_width + 1, 14271bf8429eSBarry Smith otherwise an error will be generated. 1428ec5066bdSBarry Smith 14291cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `ISColoring`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatType()`, `MatColoring`, `MatFDColoringCreate()` 1430aab9d709SJed Brown @*/ 1431d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateColoring(DM dm, ISColoringType ctype, ISColoring *coloring) 1432d71ae5a4SJacob Faibussowitsch { 143347c6ae99SBarry Smith PetscFunctionBegin; 1434171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14354f572ea9SToby Isaac PetscAssertPointer(coloring, 3); 1436dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getcoloring, ctype, coloring); 14373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 143847c6ae99SBarry Smith } 143947c6ae99SBarry Smith 1440b412c318SBarry Smith /*@ 1441bb7acecfSBarry Smith DMCreateMatrix - Gets an empty matrix for a `DM` that is most commonly used to store the Jacobian of a discrete PDE operator. 144247c6ae99SBarry Smith 144320f4b53cSBarry Smith Collective 144447c6ae99SBarry Smith 144547c6ae99SBarry Smith Input Parameter: 1446bb7acecfSBarry Smith . dm - the `DM` object 144747c6ae99SBarry Smith 144847c6ae99SBarry Smith Output Parameter: 144947c6ae99SBarry Smith . mat - the empty Jacobian 145047c6ae99SBarry Smith 145120f4b53cSBarry Smith Options Database Key: 1452bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()` and `DMCreateMassMatrix()`, but do not fill it with zeros 1453f27dd7c6SMatthew G. Knepley 145420f4b53cSBarry Smith Level: beginner 145520f4b53cSBarry Smith 145695452b02SPatrick Sanan Notes: 145795452b02SPatrick Sanan This properly preallocates the number of nonzeros in the sparse matrix so you 145894013140SBarry Smith do not need to do it yourself. 145994013140SBarry Smith 146094013140SBarry Smith By default it also sets the nonzero structure and puts in the zero entries. To prevent setting 1461bb7acecfSBarry Smith the nonzero pattern call `DMSetMatrixPreallocateOnly()` 146294013140SBarry Smith 1463bb7acecfSBarry Smith For `DMDA`, when you call `MatView()` on this matrix it is displayed using the global natural ordering, NOT in the ordering used 146494013140SBarry Smith internally by PETSc. 146594013140SBarry Smith 1466bb7acecfSBarry Smith For `DMDA`, in general it is easiest to use `MatSetValuesStencil()` or `MatSetValuesLocal()` to put values into the matrix because 1467bb7acecfSBarry Smith `MatSetValues()` requires the indices for the global numbering for the `DMDA` which is complic`ated to compute 146894013140SBarry Smith 14691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMSetMatType()`, `DMCreateMassMatrix()` 1470aab9d709SJed Brown @*/ 1471d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateMatrix(DM dm, Mat *mat) 1472d71ae5a4SJacob Faibussowitsch { 147347c6ae99SBarry Smith PetscFunctionBegin; 1474171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 14754f572ea9SToby Isaac PetscAssertPointer(mat, 2); 14769566063dSJacob Faibussowitsch PetscCall(MatInitializePackage()); 14779566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_CreateMatrix, 0, 0, 0, 0)); 1478dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, creatematrix, mat); 147976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 1480c6b011d8SStefano Zampini DM mdm; 1481c6b011d8SStefano Zampini 14829566063dSJacob Faibussowitsch PetscCall(MatGetDM(*mat, &mdm)); 14837a8be351SBarry Smith PetscCheck(mdm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "DM type '%s' did not attach the DM to the matrix", ((PetscObject)dm)->type_name); 1484c6b011d8SStefano Zampini } 1485e571a35bSMatthew G. Knepley /* Handle nullspace and near nullspace */ 1486e5e52638SMatthew G. Knepley if (dm->Nf) { 1487e571a35bSMatthew G. Knepley MatNullSpace nullSpace; 1488649ef022SMatthew Knepley PetscInt Nf, f; 1489e571a35bSMatthew G. Knepley 14909566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 1491649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1492649ef022SMatthew Knepley if (dm->nullspaceConstructors[f]) { 14939566063dSJacob Faibussowitsch PetscCall((*dm->nullspaceConstructors[f])(dm, f, f, &nullSpace)); 14949566063dSJacob Faibussowitsch PetscCall(MatSetNullSpace(*mat, nullSpace)); 14959566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1496649ef022SMatthew Knepley break; 1497e571a35bSMatthew G. Knepley } 1498649ef022SMatthew Knepley } 1499649ef022SMatthew Knepley for (f = 0; f < Nf; ++f) { 1500649ef022SMatthew Knepley if (dm->nearnullspaceConstructors[f]) { 15019566063dSJacob Faibussowitsch PetscCall((*dm->nearnullspaceConstructors[f])(dm, f, f, &nullSpace)); 15029566063dSJacob Faibussowitsch PetscCall(MatSetNearNullSpace(*mat, nullSpace)); 15039566063dSJacob Faibussowitsch PetscCall(MatNullSpaceDestroy(&nullSpace)); 1504e571a35bSMatthew G. Knepley } 1505e571a35bSMatthew G. Knepley } 1506e571a35bSMatthew G. Knepley } 15079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_CreateMatrix, 0, 0, 0, 0)); 15083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150947c6ae99SBarry Smith } 151047c6ae99SBarry Smith 1511732e2eb9SMatthew G Knepley /*@ 1512a4e35b19SJacob Faibussowitsch DMSetMatrixPreallocateSkip - When `DMCreateMatrix()` is called the matrix sizes and 1513a4e35b19SJacob Faibussowitsch `ISLocalToGlobalMapping` will be properly set, but the data structures to store values in the 1514a4e35b19SJacob Faibussowitsch matrices will not be preallocated. 1515aa0f6e3cSJed Brown 151620f4b53cSBarry Smith Logically Collective 1517aa0f6e3cSJed Brown 1518aa0f6e3cSJed Brown Input Parameters: 1519bb7acecfSBarry Smith + dm - the `DM` 1520bb7acecfSBarry Smith - skip - `PETSC_TRUE` to skip preallocation 1521aa0f6e3cSJed Brown 1522aa0f6e3cSJed Brown Level: developer 1523aa0f6e3cSJed Brown 1524*73ff1848SBarry Smith Note: 1525a4e35b19SJacob Faibussowitsch This is most useful to reduce initialization costs when `MatSetPreallocationCOO()` and 1526a4e35b19SJacob Faibussowitsch `MatSetValuesCOO()` will be used. 1527a4e35b19SJacob Faibussowitsch 15281cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateOnly()` 1529aa0f6e3cSJed Brown @*/ 1530d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateSkip(DM dm, PetscBool skip) 1531d71ae5a4SJacob Faibussowitsch { 1532aa0f6e3cSJed Brown PetscFunctionBegin; 1533aa0f6e3cSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1534aa0f6e3cSJed Brown dm->prealloc_skip = skip; 15353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1536aa0f6e3cSJed Brown } 1537aa0f6e3cSJed Brown 1538aa0f6e3cSJed Brown /*@ 1539bb7acecfSBarry Smith DMSetMatrixPreallocateOnly - When `DMCreateMatrix()` is called the matrix will be properly 1540732e2eb9SMatthew G Knepley preallocated but the nonzero structure and zero values will not be set. 1541732e2eb9SMatthew G Knepley 154220f4b53cSBarry Smith Logically Collective 1543732e2eb9SMatthew G Knepley 1544d8d19677SJose E. Roman Input Parameters: 1545bb7acecfSBarry Smith + dm - the `DM` 1546bb7acecfSBarry Smith - only - `PETSC_TRUE` if only want preallocation 1547732e2eb9SMatthew G Knepley 154820f4b53cSBarry Smith Options Database Key: 1549bb7acecfSBarry Smith . -dm_preallocate_only - Only preallocate the matrix for `DMCreateMatrix()`, `DMCreateMassMatrix()`, but do not fill it with zeros 1550f27dd7c6SMatthew G. Knepley 155120f4b53cSBarry Smith Level: developer 155220f4b53cSBarry Smith 15531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMSetMatrixStructureOnly()`, `DMSetMatrixPreallocateSkip()` 1554732e2eb9SMatthew G Knepley @*/ 1555d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixPreallocateOnly(DM dm, PetscBool only) 1556d71ae5a4SJacob Faibussowitsch { 1557732e2eb9SMatthew G Knepley PetscFunctionBegin; 1558732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1559732e2eb9SMatthew G Knepley dm->prealloc_only = only; 15603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1561732e2eb9SMatthew G Knepley } 1562732e2eb9SMatthew G Knepley 1563b06ff27eSHong Zhang /*@ 1564bb7acecfSBarry Smith DMSetMatrixStructureOnly - When `DMCreateMatrix()` is called, the matrix structure will be created 1565bb7acecfSBarry Smith but the array for numerical values will not be allocated. 1566b06ff27eSHong Zhang 156720f4b53cSBarry Smith Logically Collective 1568b06ff27eSHong Zhang 1569d8d19677SJose E. Roman Input Parameters: 1570bb7acecfSBarry Smith + dm - the `DM` 1571da81f932SPierre Jolivet - only - `PETSC_TRUE` if you only want matrix structure 1572b06ff27eSHong Zhang 1573b06ff27eSHong Zhang Level: developer 1574bb7acecfSBarry Smith 15751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `DMSetMatrixPreallocateOnly()`, `DMSetMatrixPreallocateSkip()` 1576b06ff27eSHong Zhang @*/ 1577d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetMatrixStructureOnly(DM dm, PetscBool only) 1578d71ae5a4SJacob Faibussowitsch { 1579b06ff27eSHong Zhang PetscFunctionBegin; 1580b06ff27eSHong Zhang PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1581b06ff27eSHong Zhang dm->structure_only = only; 15823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1583b06ff27eSHong Zhang } 1584b06ff27eSHong Zhang 1585863027abSJed Brown /*@ 1586863027abSJed Brown DMSetBlockingType - set the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1587863027abSJed Brown 158820f4b53cSBarry Smith Logically Collective 1589863027abSJed Brown 1590863027abSJed Brown Input Parameters: 1591863027abSJed Brown + dm - the `DM` 1592863027abSJed Brown - btype - block by topological point or field node 1593863027abSJed Brown 159420f4b53cSBarry Smith Options Database Key: 15950e762ea3SJed Brown . -dm_blocking_type [topological_point, field_node] - use topological point blocking or field node blocking 1596863027abSJed Brown 159720f4b53cSBarry Smith Level: advanced 159820f4b53cSBarry Smith 15991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1600863027abSJed Brown @*/ 1601863027abSJed Brown PetscErrorCode DMSetBlockingType(DM dm, DMBlockingType btype) 1602863027abSJed Brown { 1603863027abSJed Brown PetscFunctionBegin; 1604863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 1605863027abSJed Brown dm->blocking_type = btype; 16063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1607863027abSJed Brown } 1608863027abSJed Brown 1609863027abSJed Brown /*@ 1610863027abSJed Brown DMGetBlockingType - get the blocking granularity to be used for variable block size `DMCreateMatrix()` is called 1611863027abSJed Brown 1612863027abSJed Brown Not Collective 1613863027abSJed Brown 16142fe279fdSBarry Smith Input Parameter: 1615863027abSJed Brown . dm - the `DM` 1616863027abSJed Brown 16172fe279fdSBarry Smith Output Parameter: 1618863027abSJed Brown . btype - block by topological point or field node 1619863027abSJed Brown 1620863027abSJed Brown Level: advanced 1621863027abSJed Brown 16221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateMatrix()`, `MatSetVariableBlockSizes()` 1623863027abSJed Brown @*/ 1624863027abSJed Brown PetscErrorCode DMGetBlockingType(DM dm, DMBlockingType *btype) 1625863027abSJed Brown { 1626863027abSJed Brown PetscFunctionBegin; 1627863027abSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16284f572ea9SToby Isaac PetscAssertPointer(btype, 2); 1629863027abSJed Brown *btype = dm->blocking_type; 16303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1631863027abSJed Brown } 1632863027abSJed Brown 1633a89ea682SMatthew G Knepley /*@C 1634bb7acecfSBarry Smith DMGetWorkArray - Gets a work array guaranteed to be at least the input size, restore with `DMRestoreWorkArray()` 1635a89ea682SMatthew G Knepley 1636a89ea682SMatthew G Knepley Not Collective 1637a89ea682SMatthew G Knepley 1638a89ea682SMatthew G Knepley Input Parameters: 1639bb7acecfSBarry Smith + dm - the `DM` object 1640a5b23f4aSJose E. Roman . count - The minimum size 164120f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, or `MPIU_INT`) 1642a89ea682SMatthew G Knepley 1643a89ea682SMatthew G Knepley Output Parameter: 164460225df5SJacob Faibussowitsch . mem - the work array 1645a89ea682SMatthew G Knepley 1646a89ea682SMatthew G Knepley Level: developer 1647a89ea682SMatthew G Knepley 1648*73ff1848SBarry Smith Notes: 1649da81f932SPierre Jolivet A `DM` may stash the array between instantiations so using this routine may be more efficient than calling `PetscMalloc()` 1650bb7acecfSBarry Smith 1651bb7acecfSBarry Smith The array may contain nonzero values 1652bb7acecfSBarry Smith 16531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMRestoreWorkArray()`, `PetscMalloc()` 1654a89ea682SMatthew G Knepley @*/ 1655d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1656d71ae5a4SJacob Faibussowitsch { 1657aa1993deSMatthew G Knepley DMWorkLink link; 165869291d52SBarry Smith PetscMPIInt dsize; 1659a89ea682SMatthew G Knepley 1660a89ea682SMatthew G Knepley PetscFunctionBegin; 1661a89ea682SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 16624f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1663442f3b32SStefano Zampini if (!count) { 1664442f3b32SStefano Zampini *(void **)mem = NULL; 1665442f3b32SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 1666442f3b32SStefano Zampini } 1667aa1993deSMatthew G Knepley if (dm->workin) { 1668aa1993deSMatthew G Knepley link = dm->workin; 1669aa1993deSMatthew G Knepley dm->workin = dm->workin->next; 1670aa1993deSMatthew G Knepley } else { 16714dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&link)); 1672a89ea682SMatthew G Knepley } 1673b77fa653SStefano Zampini /* Avoid MPI_Type_size for most used datatypes 1674b77fa653SStefano Zampini Get size directly */ 1675b77fa653SStefano Zampini if (dtype == MPIU_INT) dsize = sizeof(PetscInt); 1676b77fa653SStefano Zampini else if (dtype == MPIU_REAL) dsize = sizeof(PetscReal); 1677b77fa653SStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 1678b77fa653SStefano Zampini else if (dtype == MPI_INT) dsize = sizeof(int); 1679b77fa653SStefano Zampini #endif 1680b77fa653SStefano Zampini #if defined(PETSC_USE_COMPLEX) 1681b77fa653SStefano Zampini else if (dtype == MPIU_SCALAR) dsize = sizeof(PetscScalar); 1682b77fa653SStefano Zampini #endif 1683b77fa653SStefano Zampini else PetscCallMPI(MPI_Type_size(dtype, &dsize)); 1684b77fa653SStefano Zampini 16855056fcd2SBarry Smith if (((size_t)dsize * count) > link->bytes) { 16869566063dSJacob Faibussowitsch PetscCall(PetscFree(link->mem)); 16879566063dSJacob Faibussowitsch PetscCall(PetscMalloc(dsize * count, &link->mem)); 1688854ce69bSBarry Smith link->bytes = dsize * count; 1689aa1993deSMatthew G Knepley } 1690aa1993deSMatthew G Knepley link->next = dm->workout; 1691aa1993deSMatthew G Knepley dm->workout = link; 1692cea3dcb8SSatish Balay #if defined(__MEMCHECK_H) && (defined(PLAT_amd64_linux) || defined(PLAT_x86_linux) || defined(PLAT_amd64_darwin)) 169300d952a4SJed Brown VALGRIND_MAKE_MEM_NOACCESS((char *)link->mem + (size_t)dsize * count, link->bytes - (size_t)dsize * count); 169400d952a4SJed Brown VALGRIND_MAKE_MEM_UNDEFINED(link->mem, (size_t)dsize * count); 169500d952a4SJed Brown #endif 1696aa1993deSMatthew G Knepley *(void **)mem = link->mem; 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1698a89ea682SMatthew G Knepley } 1699a89ea682SMatthew G Knepley 1700aa1993deSMatthew G Knepley /*@C 1701bb7acecfSBarry Smith DMRestoreWorkArray - Restores a work array obtained with `DMCreateWorkArray()` 1702aa1993deSMatthew G Knepley 1703aa1993deSMatthew G Knepley Not Collective 1704aa1993deSMatthew G Knepley 1705aa1993deSMatthew G Knepley Input Parameters: 1706bb7acecfSBarry Smith + dm - the `DM` object 1707a5b23f4aSJose E. Roman . count - The minimum size 170820f4b53cSBarry Smith - dtype - MPI data type, often `MPIU_REAL`, `MPIU_SCALAR`, `MPIU_INT` 1709aa1993deSMatthew G Knepley 1710aa1993deSMatthew G Knepley Output Parameter: 171160225df5SJacob Faibussowitsch . mem - the work array 1712aa1993deSMatthew G Knepley 1713aa1993deSMatthew G Knepley Level: developer 1714aa1993deSMatthew G Knepley 1715*73ff1848SBarry Smith Developer Note: 1716bb7acecfSBarry Smith count and dtype are ignored, they are only needed for `DMGetWorkArray()` 1717147403d9SBarry Smith 17181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDestroy()`, `DMCreate()`, `DMGetWorkArray()` 1719aa1993deSMatthew G Knepley @*/ 1720d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestoreWorkArray(DM dm, PetscInt count, MPI_Datatype dtype, void *mem) 1721d71ae5a4SJacob Faibussowitsch { 1722aa1993deSMatthew G Knepley DMWorkLink *p, link; 1723aa1993deSMatthew G Knepley 1724aa1993deSMatthew G Knepley PetscFunctionBegin; 1725aa1993deSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17264f572ea9SToby Isaac PetscAssertPointer(mem, 4); 1727a4e35b19SJacob Faibussowitsch (void)count; 1728a4e35b19SJacob Faibussowitsch (void)dtype; 1729442f3b32SStefano Zampini if (!*(void **)mem) PetscFunctionReturn(PETSC_SUCCESS); 1730aa1993deSMatthew G Knepley for (p = &dm->workout; (link = *p); p = &link->next) { 1731aa1993deSMatthew G Knepley if (link->mem == *(void **)mem) { 1732aa1993deSMatthew G Knepley *p = link->next; 1733aa1993deSMatthew G Knepley link->next = dm->workin; 1734aa1993deSMatthew G Knepley dm->workin = link; 17350298fd71SBarry Smith *(void **)mem = NULL; 17363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1737aa1993deSMatthew G Knepley } 1738aa1993deSMatthew G Knepley } 1739aa1993deSMatthew G Knepley SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Array was not checked out"); 1740aa1993deSMatthew G Knepley } 1741e7c4fc90SDmitry Karpeev 17428cda7954SMatthew G. Knepley /*@C 1743bb7acecfSBarry Smith DMSetNullSpaceConstructor - Provide a callback function which constructs the nullspace for a given field, defined with `DMAddField()`, when function spaces 1744bb7acecfSBarry Smith are joined or split, such as in `DMCreateSubDM()` 17458cda7954SMatthew G. Knepley 174620f4b53cSBarry Smith Logically Collective; No Fortran Support 17478cda7954SMatthew G. Knepley 17488cda7954SMatthew G. Knepley Input Parameters: 1749bb7acecfSBarry Smith + dm - The `DM` 17508cda7954SMatthew G. Knepley . field - The field number for the nullspace 17518cda7954SMatthew G. Knepley - nullsp - A callback to create the nullspace 17528cda7954SMatthew G. Knepley 175320f4b53cSBarry Smith Calling sequence of `nullsp`: 1754bb7acecfSBarry Smith + dm - The present `DM` 1755bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1756147403d9SBarry Smith . field - The field number in dm 1757147403d9SBarry Smith - nullSpace - The nullspace for the given field 17588cda7954SMatthew G. Knepley 175949762cbcSSatish Balay Level: intermediate 176049762cbcSSatish Balay 17611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1762147403d9SBarry Smith @*/ 1763a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1764d71ae5a4SJacob Faibussowitsch { 1765435a35e8SMatthew G Knepley PetscFunctionBegin; 1766435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17677a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1768435a35e8SMatthew G Knepley dm->nullspaceConstructors[field] = nullsp; 17693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1770435a35e8SMatthew G Knepley } 1771435a35e8SMatthew G Knepley 17728cda7954SMatthew G. Knepley /*@C 1773bb7acecfSBarry Smith DMGetNullSpaceConstructor - Return the callback function which constructs the nullspace for a given field, defined with `DMAddField()` 17748cda7954SMatthew G. Knepley 177520f4b53cSBarry Smith Not Collective; No Fortran Support 17768cda7954SMatthew G. Knepley 17778cda7954SMatthew G. Knepley Input Parameters: 1778bb7acecfSBarry Smith + dm - The `DM` 17798cda7954SMatthew G. Knepley - field - The field number for the nullspace 17808cda7954SMatthew G. Knepley 17818cda7954SMatthew G. Knepley Output Parameter: 17828cda7954SMatthew G. Knepley . nullsp - A callback to create the nullspace 17838cda7954SMatthew G. Knepley 178420f4b53cSBarry Smith Calling sequence of `nullsp`: 1785147403d9SBarry Smith + dm - The present DM 1786147403d9SBarry Smith . origField - The field number given above, in the original DM 1787147403d9SBarry Smith . field - The field number in dm 1788147403d9SBarry Smith - nullSpace - The nullspace for the given field 17898cda7954SMatthew G. Knepley 179049762cbcSSatish Balay Level: intermediate 179149762cbcSSatish Balay 17921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNullSpaceConstructor()`, `DMSetNearNullSpaceConstructor()`, `DMGetNearNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 1793147403d9SBarry Smith @*/ 1794a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1795d71ae5a4SJacob Faibussowitsch { 17960a50eb56SMatthew G. Knepley PetscFunctionBegin; 17970a50eb56SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 17984f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 17997a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 18000a50eb56SMatthew G. Knepley *nullsp = dm->nullspaceConstructors[field]; 18013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18020a50eb56SMatthew G. Knepley } 18030a50eb56SMatthew G. Knepley 18048cda7954SMatthew G. Knepley /*@C 1805bb7acecfSBarry Smith DMSetNearNullSpaceConstructor - Provide a callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18068cda7954SMatthew G. Knepley 180720f4b53cSBarry Smith Logically Collective; No Fortran Support 18088cda7954SMatthew G. Knepley 18098cda7954SMatthew G. Knepley Input Parameters: 1810bb7acecfSBarry Smith + dm - The `DM` 18118cda7954SMatthew G. Knepley . field - The field number for the nullspace 18128cda7954SMatthew G. Knepley - nullsp - A callback to create the near-nullspace 18138cda7954SMatthew G. Knepley 181420f4b53cSBarry Smith Calling sequence of `nullsp`: 1815bb7acecfSBarry Smith + dm - The present `DM` 1816bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1817147403d9SBarry Smith . field - The field number in dm 1818147403d9SBarry Smith - nullSpace - The nullspace for the given field 18198cda7954SMatthew G. Knepley 182049762cbcSSatish Balay Level: intermediate 182149762cbcSSatish Balay 18221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, `DMCreateSuperDM()`, 1823bb7acecfSBarry Smith `MatNullSpace` 1824147403d9SBarry Smith @*/ 1825a4e35b19SJacob Faibussowitsch PetscErrorCode DMSetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (*nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1826d71ae5a4SJacob Faibussowitsch { 1827f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1828f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18297a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1830f9d4088aSMatthew G. Knepley dm->nearnullspaceConstructors[field] = nullsp; 18313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1832f9d4088aSMatthew G. Knepley } 1833f9d4088aSMatthew G. Knepley 18348cda7954SMatthew G. Knepley /*@C 1835bb7acecfSBarry Smith DMGetNearNullSpaceConstructor - Return the callback function which constructs the near-nullspace for a given field, defined with `DMAddField()` 18368cda7954SMatthew G. Knepley 183720f4b53cSBarry Smith Not Collective; No Fortran Support 18388cda7954SMatthew G. Knepley 18398cda7954SMatthew G. Knepley Input Parameters: 1840bb7acecfSBarry Smith + dm - The `DM` 18418cda7954SMatthew G. Knepley - field - The field number for the nullspace 18428cda7954SMatthew G. Knepley 18438cda7954SMatthew G. Knepley Output Parameter: 18448cda7954SMatthew G. Knepley . nullsp - A callback to create the near-nullspace 18458cda7954SMatthew G. Knepley 184620f4b53cSBarry Smith Calling sequence of `nullsp`: 1847bb7acecfSBarry Smith + dm - The present `DM` 1848bb7acecfSBarry Smith . origField - The field number given above, in the original `DM` 1849147403d9SBarry Smith . field - The field number in dm 1850147403d9SBarry Smith - nullSpace - The nullspace for the given field 18518cda7954SMatthew G. Knepley 185249762cbcSSatish Balay Level: intermediate 185349762cbcSSatish Balay 18541cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMSetNearNullSpaceConstructor()`, `DMSetNullSpaceConstructor()`, `DMGetNullSpaceConstructor()`, `DMCreateSubDM()`, 1855bb7acecfSBarry Smith `MatNullSpace`, `DMCreateSuperDM()` 1856147403d9SBarry Smith @*/ 1857a4e35b19SJacob Faibussowitsch PetscErrorCode DMGetNearNullSpaceConstructor(DM dm, PetscInt field, PetscErrorCode (**nullsp)(DM dm, PetscInt origField, PetscInt field, MatNullSpace *nullSpace)) 1858d71ae5a4SJacob Faibussowitsch { 1859f9d4088aSMatthew G. Knepley PetscFunctionBegin; 1860f9d4088aSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 18614f572ea9SToby Isaac PetscAssertPointer(nullsp, 3); 18627a8be351SBarry Smith PetscCheck(field < 10, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot handle %" PetscInt_FMT " >= 10 fields", field); 1863f9d4088aSMatthew G. Knepley *nullsp = dm->nearnullspaceConstructors[field]; 18643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1865f9d4088aSMatthew G. Knepley } 1866f9d4088aSMatthew G. Knepley 18674f3b5142SJed Brown /*@C 1868bb7acecfSBarry Smith DMCreateFieldIS - Creates a set of `IS` objects with the global indices of dofs for each field defined with `DMAddField()` 18694d343eeaSMatthew G Knepley 187020f4b53cSBarry Smith Not Collective; No Fortran Support 18714d343eeaSMatthew G Knepley 18724d343eeaSMatthew G Knepley Input Parameter: 1873bb7acecfSBarry Smith . dm - the `DM` object 18744d343eeaSMatthew G Knepley 18754d343eeaSMatthew G Knepley Output Parameters: 187620f4b53cSBarry Smith + numFields - The number of fields (or `NULL` if not requested) 187720f4b53cSBarry Smith . fieldNames - The number of each field (or `NULL` if not requested) 187820f4b53cSBarry Smith - fields - The global indices for each field (or `NULL` if not requested) 18794d343eeaSMatthew G Knepley 18804d343eeaSMatthew G Knepley Level: intermediate 18814d343eeaSMatthew G Knepley 1882bb7acecfSBarry Smith Note: 1883*73ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `fieldNames` should be freed with 1884*73ff1848SBarry Smith `PetscFree()`, every entry of `fields` should be destroyed with `ISDestroy()`, and both arrays should be freed with 1885bb7acecfSBarry Smith `PetscFree()`. 188621c9b008SJed Brown 1887*73ff1848SBarry Smith Developer Note: 1888bb7acecfSBarry Smith It is not clear why both this function and `DMCreateFieldDecomposition()` exist. Having two seems redundant and confusing. This function should 1889bb7acecfSBarry Smith likely be removed. 1890bb7acecfSBarry Smith 18911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, 1892bb7acecfSBarry Smith `DMCreateFieldDecomposition()` 18934d343eeaSMatthew G Knepley @*/ 1894d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldIS(DM dm, PetscInt *numFields, char ***fieldNames, IS **fields) 1895d71ae5a4SJacob Faibussowitsch { 189637d0c07bSMatthew G Knepley PetscSection section, sectionGlobal; 18974d343eeaSMatthew G Knepley 18984d343eeaSMatthew G Knepley PetscFunctionBegin; 18994d343eeaSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 190069ca1f37SDmitry Karpeev if (numFields) { 19014f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 190269ca1f37SDmitry Karpeev *numFields = 0; 190369ca1f37SDmitry Karpeev } 190437d0c07bSMatthew G Knepley if (fieldNames) { 19054f572ea9SToby Isaac PetscAssertPointer(fieldNames, 3); 19060298fd71SBarry Smith *fieldNames = NULL; 190769ca1f37SDmitry Karpeev } 190869ca1f37SDmitry Karpeev if (fields) { 19094f572ea9SToby Isaac PetscAssertPointer(fields, 4); 19100298fd71SBarry Smith *fields = NULL; 191169ca1f37SDmitry Karpeev } 19129566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 191337d0c07bSMatthew G Knepley if (section) { 19143a544194SStefano Zampini PetscInt *fieldSizes, *fieldNc, **fieldIndices; 191537d0c07bSMatthew G Knepley PetscInt nF, f, pStart, pEnd, p; 191637d0c07bSMatthew G Knepley 19179566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, §ionGlobal)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(section, &nF)); 19199566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nF, &fieldSizes, nF, &fieldNc, nF, &fieldIndices)); 19209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(sectionGlobal, &pStart, &pEnd)); 192137d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 192237d0c07bSMatthew G Knepley fieldSizes[f] = 0; 19239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(section, f, &fieldNc[f])); 192437d0c07bSMatthew G Knepley } 192537d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 192637d0c07bSMatthew G Knepley PetscInt gdof; 192737d0c07bSMatthew G Knepley 19289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 192937d0c07bSMatthew G Knepley if (gdof > 0) { 193037d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19313a544194SStefano Zampini PetscInt fdof, fcdof, fpdof; 193237d0c07bSMatthew G Knepley 19339566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19349566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 19353a544194SStefano Zampini fpdof = fdof - fcdof; 19363a544194SStefano Zampini if (fpdof && fpdof != fieldNc[f]) { 19373a544194SStefano Zampini /* Layout does not admit a pointwise block size */ 19383a544194SStefano Zampini fieldNc[f] = 1; 19393a544194SStefano Zampini } 19403a544194SStefano Zampini fieldSizes[f] += fpdof; 194137d0c07bSMatthew G Knepley } 194237d0c07bSMatthew G Knepley } 194337d0c07bSMatthew G Knepley } 194437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fieldSizes[f], &fieldIndices[f])); 194637d0c07bSMatthew G Knepley fieldSizes[f] = 0; 194737d0c07bSMatthew G Knepley } 194837d0c07bSMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 194937d0c07bSMatthew G Knepley PetscInt gdof, goff; 195037d0c07bSMatthew G Knepley 19519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(sectionGlobal, p, &gdof)); 195237d0c07bSMatthew G Knepley if (gdof > 0) { 19539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(sectionGlobal, p, &goff)); 195437d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 195537d0c07bSMatthew G Knepley PetscInt fdof, fcdof, fc; 195637d0c07bSMatthew G Knepley 19579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(section, p, f, &fdof)); 19589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldConstraintDof(section, p, f, &fcdof)); 1959ad540459SPierre Jolivet for (fc = 0; fc < fdof - fcdof; ++fc, ++fieldSizes[f]) fieldIndices[f][fieldSizes[f]] = goff++; 196037d0c07bSMatthew G Knepley } 196137d0c07bSMatthew G Knepley } 196237d0c07bSMatthew G Knepley } 19638865f1eaSKarl Rupp if (numFields) *numFields = nF; 196437d0c07bSMatthew G Knepley if (fieldNames) { 19659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fieldNames)); 196637d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 196737d0c07bSMatthew G Knepley const char *fieldName; 196837d0c07bSMatthew G Knepley 19699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 19709566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*fieldNames)[f])); 197137d0c07bSMatthew G Knepley } 197237d0c07bSMatthew G Knepley } 197337d0c07bSMatthew G Knepley if (fields) { 19749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nF, fields)); 197537d0c07bSMatthew G Knepley for (f = 0; f < nF; ++f) { 19763a544194SStefano Zampini PetscInt bs, in[2], out[2]; 19773a544194SStefano Zampini 19789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)dm), fieldSizes[f], fieldIndices[f], PETSC_OWN_POINTER, &(*fields)[f])); 19793a544194SStefano Zampini in[0] = -fieldNc[f]; 19803a544194SStefano Zampini in[1] = fieldNc[f]; 19811c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(in, out, 2, MPIU_INT, MPI_MAX, PetscObjectComm((PetscObject)dm))); 19823a544194SStefano Zampini bs = (-out[0] == out[1]) ? out[1] : 1; 19839566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize((*fields)[f], bs)); 198437d0c07bSMatthew G Knepley } 198537d0c07bSMatthew G Knepley } 19869566063dSJacob Faibussowitsch PetscCall(PetscFree3(fieldSizes, fieldNc, fieldIndices)); 1987dbbe0bcdSBarry Smith } else PetscTryTypeMethod(dm, createfieldis, numFields, fieldNames, fields); 19883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19894d343eeaSMatthew G Knepley } 19904d343eeaSMatthew G Knepley 199116621825SDmitry Karpeev /*@C 1992bb7acecfSBarry Smith DMCreateFieldDecomposition - Returns a list of `IS` objects defining a decomposition of a problem into subproblems 1993a4e35b19SJacob Faibussowitsch corresponding to different fields. 1994e7c4fc90SDmitry Karpeev 199520f4b53cSBarry Smith Not Collective; No Fortran Support 1996e7c4fc90SDmitry Karpeev 1997e7c4fc90SDmitry Karpeev Input Parameter: 1998bb7acecfSBarry Smith . dm - the `DM` object 1999e7c4fc90SDmitry Karpeev 2000e7c4fc90SDmitry Karpeev Output Parameters: 200120f4b53cSBarry Smith + len - The number of fields (or `NULL` if not requested) 200220f4b53cSBarry Smith . namelist - The name for each field (or `NULL` if not requested) 200320f4b53cSBarry Smith . islist - The global indices for each field (or `NULL` if not requested) 200420f4b53cSBarry Smith - dmlist - The `DM`s for each field subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 2005e7c4fc90SDmitry Karpeev 2006e7c4fc90SDmitry Karpeev Level: intermediate 2007e7c4fc90SDmitry Karpeev 2008a4e35b19SJacob Faibussowitsch Notes: 2009a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding field, defined by 2010a4e35b19SJacob Faibussowitsch `DMAddField()`. The optional list of `DM`s define the `DM` for each subproblem. 2011a4e35b19SJacob Faibussowitsch 2012a4e35b19SJacob Faibussowitsch The same as `DMCreateFieldIS()` but also returns a `DM` for each field. 2013a4e35b19SJacob Faibussowitsch 2014*73ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 2015*73ff1848SBarry Smith `PetscFree()`, every entry of `islist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2016bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 2017e7c4fc90SDmitry Karpeev 201860225df5SJacob Faibussowitsch Developer Notes: 2019bb7acecfSBarry Smith It is not clear why this function and `DMCreateFieldIS()` exist. Having two seems redundant and confusing. 2020bb7acecfSBarry Smith 2021*73ff1848SBarry Smith Unlike `DMRefine()`, `DMCoarsen()`, and `DMCreateDomainDecomposition()` this provides no mechanism to provide hooks that are called after the 2022*73ff1848SBarry Smith decomposition is computed. 2023*73ff1848SBarry Smith 2024*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMCreateFieldIS()`, `DMCreateSubDM()`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 2025e7c4fc90SDmitry Karpeev @*/ 2026d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFieldDecomposition(DM dm, PetscInt *len, char ***namelist, IS **islist, DM **dmlist) 2027d71ae5a4SJacob Faibussowitsch { 2028e7c4fc90SDmitry Karpeev PetscFunctionBegin; 2029e7c4fc90SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 20308865f1eaSKarl Rupp if (len) { 20314f572ea9SToby Isaac PetscAssertPointer(len, 2); 20328865f1eaSKarl Rupp *len = 0; 20338865f1eaSKarl Rupp } 20348865f1eaSKarl Rupp if (namelist) { 20354f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 2036ea78f98cSLisandro Dalcin *namelist = NULL; 20378865f1eaSKarl Rupp } 20388865f1eaSKarl Rupp if (islist) { 20394f572ea9SToby Isaac PetscAssertPointer(islist, 4); 2040ea78f98cSLisandro Dalcin *islist = NULL; 20418865f1eaSKarl Rupp } 20428865f1eaSKarl Rupp if (dmlist) { 20434f572ea9SToby Isaac PetscAssertPointer(dmlist, 5); 2044ea78f98cSLisandro Dalcin *dmlist = NULL; 20458865f1eaSKarl Rupp } 2046f3f0edfdSDmitry Karpeev /* 2047f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2048f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2049f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2050f3f0edfdSDmitry Karpeev */ 20517a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 205216621825SDmitry Karpeev if (!dm->ops->createfielddecomposition) { 2053435a35e8SMatthew G Knepley PetscSection section; 2054435a35e8SMatthew G Knepley PetscInt numFields, f; 2055435a35e8SMatthew G Knepley 20569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 20579566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(section, &numFields)); 2058435a35e8SMatthew G Knepley if (section && numFields && dm->ops->createsubdm) { 2059f25d98f1SMatthew G. Knepley if (len) *len = numFields; 20609566063dSJacob Faibussowitsch if (namelist) PetscCall(PetscMalloc1(numFields, namelist)); 20619566063dSJacob Faibussowitsch if (islist) PetscCall(PetscMalloc1(numFields, islist)); 20629566063dSJacob Faibussowitsch if (dmlist) PetscCall(PetscMalloc1(numFields, dmlist)); 2063435a35e8SMatthew G Knepley for (f = 0; f < numFields; ++f) { 2064435a35e8SMatthew G Knepley const char *fieldName; 2065435a35e8SMatthew G Knepley 20669566063dSJacob Faibussowitsch PetscCall(DMCreateSubDM(dm, 1, &f, islist ? &(*islist)[f] : NULL, dmlist ? &(*dmlist)[f] : NULL)); 206703dc3394SMatthew G. Knepley if (namelist) { 20689566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(section, f, &fieldName)); 20699566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(fieldName, (char **)&(*namelist)[f])); 2070435a35e8SMatthew G Knepley } 207103dc3394SMatthew G. Knepley } 2072435a35e8SMatthew G Knepley } else { 20739566063dSJacob Faibussowitsch PetscCall(DMCreateFieldIS(dm, len, namelist, islist)); 2074e7c4fc90SDmitry Karpeev /* By default there are no DMs associated with subproblems. */ 20750298fd71SBarry Smith if (dmlist) *dmlist = NULL; 2076e7c4fc90SDmitry Karpeev } 2077dbbe0bcdSBarry Smith } else PetscUseTypeMethod(dm, createfielddecomposition, len, namelist, islist, dmlist); 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207916621825SDmitry Karpeev } 208016621825SDmitry Karpeev 2081412a4547SAlexis Marboeuf /*@C 208220f4b53cSBarry Smith DMCreateSubDM - Returns an `IS` and `DM` encapsulating a subproblem defined by the fields passed in. 208320f4b53cSBarry Smith The fields are defined by `DMCreateFieldIS()`. 2084435a35e8SMatthew G Knepley 2085435a35e8SMatthew G Knepley Not collective 2086435a35e8SMatthew G Knepley 2087435a35e8SMatthew G Knepley Input Parameters: 2088bb7acecfSBarry Smith + dm - The `DM` object 2089bb7acecfSBarry Smith . numFields - The number of fields to select 20902adcc780SMatthew G. Knepley - fields - The field numbers of the selected fields 2091435a35e8SMatthew G Knepley 2092435a35e8SMatthew G Knepley Output Parameters: 2093bb7acecfSBarry Smith + is - The global indices for all the degrees of freedom in the new sub `DM` 2094bb7acecfSBarry Smith - subdm - The `DM` for the subproblem 2095435a35e8SMatthew G Knepley 209620f4b53cSBarry Smith Level: intermediate 209720f4b53cSBarry Smith 2098bb7acecfSBarry Smith Note: 2099bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21005d3b26e6SMatthew G. Knepley 210160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCreateFieldIS()`, `DMCreateFieldDecomposition()`, `DMAddField()`, `DMCreateSuperDM()`, `IS`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 2102435a35e8SMatthew G Knepley @*/ 2103d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSubDM(DM dm, PetscInt numFields, const PetscInt fields[], IS *is, DM *subdm) 2104d71ae5a4SJacob Faibussowitsch { 2105435a35e8SMatthew G Knepley PetscFunctionBegin; 2106435a35e8SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21074f572ea9SToby Isaac PetscAssertPointer(fields, 3); 21084f572ea9SToby Isaac if (is) PetscAssertPointer(is, 4); 21094f572ea9SToby Isaac if (subdm) PetscAssertPointer(subdm, 5); 2110dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createsubdm, numFields, fields, is, subdm); 21113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2112435a35e8SMatthew G Knepley } 2113435a35e8SMatthew G Knepley 21142adcc780SMatthew G. Knepley /*@C 2115bb7acecfSBarry Smith DMCreateSuperDM - Returns an arrays of `IS` and `DM` encapsulating a superproblem defined by multiple `DM`s passed in. 21162adcc780SMatthew G. Knepley 21172adcc780SMatthew G. Knepley Not collective 21182adcc780SMatthew G. Knepley 2119d8d19677SJose E. Roman Input Parameters: 2120bb7acecfSBarry Smith + dms - The `DM` objects 2121bb7acecfSBarry Smith - n - The number of `DM`s 21222adcc780SMatthew G. Knepley 21232adcc780SMatthew G. Knepley Output Parameters: 2124bb7acecfSBarry Smith + is - The global indices for each of subproblem within the super `DM`, or NULL 2125bb7acecfSBarry Smith - superdm - The `DM` for the superproblem 21262adcc780SMatthew G. Knepley 212720f4b53cSBarry Smith Level: intermediate 212820f4b53cSBarry Smith 2129bb7acecfSBarry Smith Note: 2130bb7acecfSBarry Smith You need to call `DMPlexSetMigrationSF()` on the original `DM` if you want the Global-To-Natural map to be automatically constructed 21315d3b26e6SMatthew G. Knepley 2132*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateSubDM()`, `DMPlexSetMigrationSF()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()`, `DMCreateDomainDecomposition()` 21332adcc780SMatthew G. Knepley @*/ 2134d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSuperDM(DM dms[], PetscInt n, IS **is, DM *superdm) 2135d71ae5a4SJacob Faibussowitsch { 21362adcc780SMatthew G. Knepley PetscInt i; 21372adcc780SMatthew G. Knepley 21382adcc780SMatthew G. Knepley PetscFunctionBegin; 21394f572ea9SToby Isaac PetscAssertPointer(dms, 1); 2140ad540459SPierre Jolivet for (i = 0; i < n; ++i) PetscValidHeaderSpecific(dms[i], DM_CLASSID, 1); 21414f572ea9SToby Isaac if (is) PetscAssertPointer(is, 3); 21424f572ea9SToby Isaac PetscAssertPointer(superdm, 4); 2143bb7acecfSBarry Smith PetscCheck(n >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of DMs must be nonnegative: %" PetscInt_FMT, n); 2144bb7acecfSBarry Smith if (n) { 2145b9d85ea2SLisandro Dalcin DM dm = dms[0]; 214600045ab3SPierre Jolivet PetscCheck(dm->ops->createsuperdm, PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No method createsuperdm for DM of type %s", ((PetscObject)dm)->type_name); 2147dbbe0bcdSBarry Smith PetscCall((*dm->ops->createsuperdm)(dms, n, is, superdm)); 21482adcc780SMatthew G. Knepley } 21493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21502adcc780SMatthew G. Knepley } 21512adcc780SMatthew G. Knepley 215216621825SDmitry Karpeev /*@C 2153a4e35b19SJacob Faibussowitsch DMCreateDomainDecomposition - Returns lists of `IS` objects defining a decomposition of a 2154a4e35b19SJacob Faibussowitsch problem into subproblems corresponding to restrictions to pairs of nested subdomains. 215516621825SDmitry Karpeev 215620f4b53cSBarry Smith Not Collective 215716621825SDmitry Karpeev 215816621825SDmitry Karpeev Input Parameter: 2159bb7acecfSBarry Smith . dm - the `DM` object 216016621825SDmitry Karpeev 216116621825SDmitry Karpeev Output Parameters: 216220f4b53cSBarry Smith + n - The number of subproblems in the domain decomposition (or `NULL` if not requested) 216320f4b53cSBarry Smith . namelist - The name for each subdomain (or `NULL` if not requested) 2164*73ff1848SBarry Smith . innerislist - The global indices for each inner subdomain (or `NULL`, if not requested) 2165*73ff1848SBarry Smith . outerislist - The global indices for each outer subdomain (or `NULL`, if not requested) 2166*73ff1848SBarry Smith - dmlist - The `DM`s for each subdomain subproblem (or `NULL`, if not requested; if `NULL` is returned, no `DM`s are defined) 216716621825SDmitry Karpeev 216816621825SDmitry Karpeev Level: intermediate 216916621825SDmitry Karpeev 2170*73ff1848SBarry Smith Notes: 2171a4e35b19SJacob Faibussowitsch Each `IS` contains the global indices of the dofs of the corresponding subdomains with in the 2172a4e35b19SJacob Faibussowitsch dofs of the original `DM`. The inner subdomains conceptually define a nonoverlapping 2173a4e35b19SJacob Faibussowitsch covering, while outer subdomains can overlap. 2174a4e35b19SJacob Faibussowitsch 2175a4e35b19SJacob Faibussowitsch The optional list of `DM`s define a `DM` for each subproblem. 2176a4e35b19SJacob Faibussowitsch 2177*73ff1848SBarry Smith The user is responsible for freeing all requested arrays. In particular, every entry of `namelist` should be freed with 2178*73ff1848SBarry Smith `PetscFree()`, every entry of `innerislist` and `outerislist` should be destroyed with `ISDestroy()`, every entry of `dmlist` should be destroyed with `DMDestroy()`, 2179bb7acecfSBarry Smith and all of the arrays should be freed with `PetscFree()`. 218016621825SDmitry Karpeev 2181a4e35b19SJacob Faibussowitsch Developer Notes: 218220f4b53cSBarry Smith The `dmlist` is for the inner subdomains or the outer subdomains or all subdomains? 2183bb7acecfSBarry Smith 2184*73ff1848SBarry Smith The names are inconsistent, the hooks use `DMSubDomainHook` which is nothing like `DMCreateDomainDecomposition()` while `DMRefineHook` is used for `DMRefine()`. 2185*73ff1848SBarry Smith 2186*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateFieldDecomposition()`, `DMDestroy()`, `DMCreateDomainDecompositionScatters()`, `DMView()`, `DMCreateInterpolation()`, 2187*73ff1848SBarry Smith `DMSubDomainHookAdd()`, `DMSubDomainHookRemove()`,`DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMRefine()`, `DMCoarsen()` 218816621825SDmitry Karpeev @*/ 2189d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecomposition(DM dm, PetscInt *n, char ***namelist, IS **innerislist, IS **outerislist, DM **dmlist) 2190d71ae5a4SJacob Faibussowitsch { 2191be081cd6SPeter Brune DMSubDomainHookLink link; 2192be081cd6SPeter Brune PetscInt i, l; 219316621825SDmitry Karpeev 219416621825SDmitry Karpeev PetscFunctionBegin; 219516621825SDmitry Karpeev PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 21969371c9d4SSatish Balay if (n) { 21974f572ea9SToby Isaac PetscAssertPointer(n, 2); 21989371c9d4SSatish Balay *n = 0; 21999371c9d4SSatish Balay } 22009371c9d4SSatish Balay if (namelist) { 22014f572ea9SToby Isaac PetscAssertPointer(namelist, 3); 22029371c9d4SSatish Balay *namelist = NULL; 22039371c9d4SSatish Balay } 22049371c9d4SSatish Balay if (innerislist) { 22054f572ea9SToby Isaac PetscAssertPointer(innerislist, 4); 22069371c9d4SSatish Balay *innerislist = NULL; 22079371c9d4SSatish Balay } 22089371c9d4SSatish Balay if (outerislist) { 22094f572ea9SToby Isaac PetscAssertPointer(outerislist, 5); 22109371c9d4SSatish Balay *outerislist = NULL; 22119371c9d4SSatish Balay } 22129371c9d4SSatish Balay if (dmlist) { 22134f572ea9SToby Isaac PetscAssertPointer(dmlist, 6); 22149371c9d4SSatish Balay *dmlist = NULL; 22159371c9d4SSatish Balay } 2216f3f0edfdSDmitry Karpeev /* 2217f3f0edfdSDmitry Karpeev Is it a good idea to apply the following check across all impls? 2218f3f0edfdSDmitry Karpeev Perhaps some impls can have a well-defined decomposition before DMSetUp? 2219f3f0edfdSDmitry Karpeev This, however, follows the general principle that accessors are not well-behaved until the object is set up. 2220f3f0edfdSDmitry Karpeev */ 22217a8be351SBarry Smith PetscCheck(dm->setupcalled, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Decomposition defined only after DMSetUp"); 222216621825SDmitry Karpeev if (dm->ops->createdomaindecomposition) { 2223dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createdomaindecomposition, &l, namelist, innerislist, outerislist, dmlist); 222414a18fd3SPeter Brune /* copy subdomain hooks and context over to the subdomain DMs */ 2225f891f5b9SPatrick Sanan if (dmlist && *dmlist) { 2226be081cd6SPeter Brune for (i = 0; i < l; i++) { 2227be081cd6SPeter Brune for (link = dm->subdomainhook; link; link = link->next) { 22289566063dSJacob Faibussowitsch if (link->ddhook) PetscCall((*link->ddhook)(dm, (*dmlist)[i], link->ctx)); 2229be081cd6SPeter Brune } 2230648262bbSPatrick Sanan if (dm->ctx) (*dmlist)[i]->ctx = dm->ctx; 2231e7c4fc90SDmitry Karpeev } 223214a18fd3SPeter Brune } 2233bb7acecfSBarry Smith if (n) *n = l; 223414a18fd3SPeter Brune } 22353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2236e30e807fSPeter Brune } 2237e30e807fSPeter Brune 2238e30e807fSPeter Brune /*@C 2239*73ff1848SBarry Smith DMCreateDomainDecompositionScatters - Returns scatters to the subdomain vectors from the global vector for subdomains created with 2240*73ff1848SBarry Smith `DMCreateDomainDecomposition()` 2241e30e807fSPeter Brune 224220f4b53cSBarry Smith Not Collective 2243e30e807fSPeter Brune 2244e30e807fSPeter Brune Input Parameters: 2245bb7acecfSBarry Smith + dm - the `DM` object 2246*73ff1848SBarry Smith . n - the number of subdomains 2247e30e807fSPeter Brune - subdms - the local subdomains 2248e30e807fSPeter Brune 2249e30e807fSPeter Brune Output Parameters: 22506b867d5aSJose E. Roman + iscat - scatter from global vector to nonoverlapping global vector entries on subdomain 2251e30e807fSPeter Brune . oscat - scatter from global vector to overlapping global vector entries on subdomain 2252e30e807fSPeter Brune - gscat - scatter from global vector to local vector on subdomain (fills in ghosts) 2253e30e807fSPeter Brune 225420f4b53cSBarry Smith Level: developer 225520f4b53cSBarry Smith 2256bb7acecfSBarry Smith Note: 2257bb7acecfSBarry Smith This is an alternative to the iis and ois arguments in `DMCreateDomainDecomposition()` that allow for the solution 2258e30e807fSPeter Brune of general nonlinear problems with overlapping subdomain methods. While merely having index sets that enable subsets 2259e30e807fSPeter Brune of the residual equations to be created is fine for linear problems, nonlinear problems require local assembly of 2260e30e807fSPeter Brune solution and residual data. 2261e30e807fSPeter Brune 2262*73ff1848SBarry Smith Developer Note: 2263a4e35b19SJacob Faibussowitsch Can the subdms input be anything or are they exactly the `DM` obtained from 2264a4e35b19SJacob Faibussowitsch `DMCreateDomainDecomposition()`? 2265bb7acecfSBarry Smith 22661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateDomainDecomposition()`, `DMDestroy()`, `DMView()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMCreateFieldIS()` 2267e30e807fSPeter Brune @*/ 2268d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDomainDecompositionScatters(DM dm, PetscInt n, DM *subdms, VecScatter **iscat, VecScatter **oscat, VecScatter **gscat) 2269d71ae5a4SJacob Faibussowitsch { 2270e30e807fSPeter Brune PetscFunctionBegin; 2271e30e807fSPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 22724f572ea9SToby Isaac PetscAssertPointer(subdms, 3); 2273dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createddscatters, n, subdms, iscat, oscat, gscat); 22743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2275e7c4fc90SDmitry Karpeev } 2276e7c4fc90SDmitry Karpeev 227747c6ae99SBarry Smith /*@ 2278bb7acecfSBarry Smith DMRefine - Refines a `DM` object using a standard nonadaptive refinement of the underlying mesh 227947c6ae99SBarry Smith 228020f4b53cSBarry Smith Collective 228147c6ae99SBarry Smith 2282d8d19677SJose E. Roman Input Parameters: 2283bb7acecfSBarry Smith + dm - the `DM` object 2284bb7acecfSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 228547c6ae99SBarry Smith 228647c6ae99SBarry Smith Output Parameter: 228720f4b53cSBarry Smith . dmf - the refined `DM`, or `NULL` 2288ae0a1c52SMatthew G Knepley 228920f4b53cSBarry Smith Options Database Key: 2290412e9a14SMatthew G. Knepley . -dm_plex_cell_refiner <strategy> - chooses the refinement strategy, e.g. regular, tohex 2291412e9a14SMatthew G. Knepley 229247c6ae99SBarry Smith Level: developer 229347c6ae99SBarry Smith 229420f4b53cSBarry Smith Note: 229520f4b53cSBarry Smith If no refinement was done, the return value is `NULL` 229620f4b53cSBarry Smith 2297*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 2298*73ff1848SBarry Smith `DMRefineHookAdd()`, `DMRefineHookRemove()` 229947c6ae99SBarry Smith @*/ 2300d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefine(DM dm, MPI_Comm comm, DM *dmf) 2301d71ae5a4SJacob Faibussowitsch { 2302c833c3b5SJed Brown DMRefineHookLink link; 230347c6ae99SBarry Smith 230447c6ae99SBarry Smith PetscFunctionBegin; 2305732e2eb9SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 23069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Refine, dm, 0, 0, 0)); 2307dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, refine, comm, dmf); 23084057135bSMatthew G Knepley if (*dmf) { 230943842a1eSJed Brown (*dmf)->ops->creatematrix = dm->ops->creatematrix; 23108865f1eaSKarl Rupp 23119566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmf)); 23128865f1eaSKarl Rupp 2313644e2e5bSBarry Smith (*dmf)->ctx = dm->ctx; 23140598a293SJed Brown (*dmf)->leveldown = dm->leveldown; 2315656b349aSBarry Smith (*dmf)->levelup = dm->levelup + 1; 23168865f1eaSKarl Rupp 23179566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmf, dm->mattype)); 2318c833c3b5SJed Brown for (link = dm->refinehook; link; link = link->next) { 23191baa6e33SBarry Smith if (link->refinehook) PetscCall((*link->refinehook)(dm, *dmf, link->ctx)); 2320c833c3b5SJed Brown } 2321c833c3b5SJed Brown } 23229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Refine, dm, 0, 0, 0)); 23233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2324c833c3b5SJed Brown } 2325c833c3b5SJed Brown 2326bb9467b5SJed Brown /*@C 2327c833c3b5SJed Brown DMRefineHookAdd - adds a callback to be run when interpolating a nonlinear problem to a finer grid 2328c833c3b5SJed Brown 232920f4b53cSBarry Smith Logically Collective; No Fortran Support 2330c833c3b5SJed Brown 23314165533cSJose E. Roman Input Parameters: 2332bb7acecfSBarry Smith + coarse - `DM` on which to run a hook when interpolating to a finer level 2333bb7acecfSBarry Smith . refinehook - function to run when setting up the finer level 2334f826b5fcSPierre Jolivet . interphook - function to run to update data on finer levels (once per `SNESSolve()`) 233520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2336c833c3b5SJed Brown 233720f4b53cSBarry Smith Calling sequence of `refinehook`: 2338bb7acecfSBarry Smith + coarse - coarse level `DM` 2339bb7acecfSBarry Smith . fine - fine level `DM` to interpolate problem to 2340c833c3b5SJed Brown - ctx - optional user-defined function context 2341c833c3b5SJed Brown 234220f4b53cSBarry Smith Calling sequence of `interphook`: 2343bb7acecfSBarry Smith + coarse - coarse level `DM` 2344c833c3b5SJed Brown . interp - matrix interpolating a coarse-level solution to the finer grid 2345bb7acecfSBarry Smith . fine - fine level `DM` to update 2346c833c3b5SJed Brown - ctx - optional user-defined function context 2347c833c3b5SJed Brown 2348c833c3b5SJed Brown Level: advanced 2349c833c3b5SJed Brown 2350c833c3b5SJed Brown Notes: 2351bb7acecfSBarry Smith This function is only needed if auxiliary data that is attached to the `DM`s via, for example, `PetscObjectCompose()`, needs to be 2352bb7acecfSBarry Smith passed to fine grids while grid sequencing. 2353bb7acecfSBarry Smith 2354bb7acecfSBarry Smith The actual interpolation is done when `DMInterpolate()` is called. 2355c833c3b5SJed Brown 2356c833c3b5SJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 2357c833c3b5SJed Brown 23581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2359c833c3b5SJed Brown @*/ 2360a4e35b19SJacob Faibussowitsch PetscErrorCode DMRefineHookAdd(DM coarse, PetscErrorCode (*refinehook)(DM coarse, DM fine, void *ctx), PetscErrorCode (*interphook)(DM coarse, Mat interp, DM fine, void *ctx), void *ctx) 2361d71ae5a4SJacob Faibussowitsch { 2362c833c3b5SJed Brown DMRefineHookLink link, *p; 2363c833c3b5SJed Brown 2364c833c3b5SJed Brown PetscFunctionBegin; 2365c833c3b5SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 23663d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 23673ba16761SJacob Faibussowitsch if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 23683d8e3701SJed Brown } 23699566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2370c833c3b5SJed Brown link->refinehook = refinehook; 2371c833c3b5SJed Brown link->interphook = interphook; 2372c833c3b5SJed Brown link->ctx = ctx; 23730298fd71SBarry Smith link->next = NULL; 2374c833c3b5SJed Brown *p = link; 23753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2376c833c3b5SJed Brown } 2377c833c3b5SJed Brown 23783d8e3701SJed Brown /*@C 2379bb7acecfSBarry Smith DMRefineHookRemove - remove a callback from the list of hooks, that have been set with `DMRefineHookAdd()`, to be run when interpolating 2380bb7acecfSBarry Smith a nonlinear problem to a finer grid 23813d8e3701SJed Brown 238220f4b53cSBarry Smith Logically Collective; No Fortran Support 23833d8e3701SJed Brown 23844165533cSJose E. Roman Input Parameters: 2385bb7acecfSBarry Smith + coarse - the `DM` on which to run a hook when restricting to a coarser level 2386bb7acecfSBarry Smith . refinehook - function to run when setting up a finer level 2387bb7acecfSBarry Smith . interphook - function to run to update data on finer levels 238820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 23893d8e3701SJed Brown 23903d8e3701SJed Brown Level: advanced 23913d8e3701SJed Brown 2392bb7acecfSBarry Smith Note: 23933d8e3701SJed Brown This function does nothing if the hook is not in the list. 23943d8e3701SJed Brown 23951cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `DMCoarsenHookRemove()`, `DMInterpolate()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 23963d8e3701SJed Brown @*/ 2397d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHookRemove(DM coarse, PetscErrorCode (*refinehook)(DM, DM, void *), PetscErrorCode (*interphook)(DM, Mat, DM, void *), void *ctx) 2398d71ae5a4SJacob Faibussowitsch { 23993d8e3701SJed Brown DMRefineHookLink link, *p; 24003d8e3701SJed Brown 24013d8e3701SJed Brown PetscFunctionBegin; 24023d8e3701SJed Brown PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24033d8e3701SJed Brown for (p = &coarse->refinehook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 24043d8e3701SJed Brown if ((*p)->refinehook == refinehook && (*p)->interphook == interphook && (*p)->ctx == ctx) { 24053d8e3701SJed Brown link = *p; 24063d8e3701SJed Brown *p = link->next; 24079566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 24083d8e3701SJed Brown break; 24093d8e3701SJed Brown } 24103d8e3701SJed Brown } 24113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24123d8e3701SJed Brown } 24133d8e3701SJed Brown 2414c833c3b5SJed Brown /*@ 2415bb7acecfSBarry Smith DMInterpolate - interpolates user-defined problem data attached to a `DM` to a finer `DM` by running hooks registered by `DMRefineHookAdd()` 2416c833c3b5SJed Brown 2417c833c3b5SJed Brown Collective if any hooks are 2418c833c3b5SJed Brown 24194165533cSJose E. Roman Input Parameters: 2420bb7acecfSBarry Smith + coarse - coarser `DM` to use as a base 2421bb7acecfSBarry Smith . interp - interpolation matrix, apply using `MatInterpolate()` 2422bb7acecfSBarry Smith - fine - finer `DM` to update 2423c833c3b5SJed Brown 2424c833c3b5SJed Brown Level: developer 2425c833c3b5SJed Brown 2426*73ff1848SBarry Smith Developer Note: 2427bb7acecfSBarry Smith This routine is called `DMInterpolate()` while the hook is called `DMRefineHookAdd()`. It would be better to have an 2428bb7acecfSBarry Smith an API with consistent terminology. 2429bb7acecfSBarry Smith 24301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefineHookAdd()`, `MatInterpolate()` 2431c833c3b5SJed Brown @*/ 2432d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolate(DM coarse, Mat interp, DM fine) 2433d71ae5a4SJacob Faibussowitsch { 2434c833c3b5SJed Brown DMRefineHookLink link; 2435c833c3b5SJed Brown 2436c833c3b5SJed Brown PetscFunctionBegin; 2437c833c3b5SJed Brown for (link = fine->refinehook; link; link = link->next) { 24381baa6e33SBarry Smith if (link->interphook) PetscCall((*link->interphook)(coarse, interp, fine, link->ctx)); 24394057135bSMatthew G Knepley } 24403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244147c6ae99SBarry Smith } 244247c6ae99SBarry Smith 2443eb3f98d2SBarry Smith /*@ 24441f3379b2SToby Isaac DMInterpolateSolution - Interpolates a solution from a coarse mesh to a fine mesh. 24451f3379b2SToby Isaac 244620f4b53cSBarry Smith Collective 24471f3379b2SToby Isaac 24484165533cSJose E. Roman Input Parameters: 2449bb7acecfSBarry Smith + coarse - coarse `DM` 2450bb7acecfSBarry Smith . fine - fine `DM` 2451bb7acecfSBarry Smith . interp - (optional) the matrix computed by `DMCreateInterpolation()`. Implementations may not need this, but if it 2452bb7acecfSBarry Smith is available it can avoid some recomputation. If it is provided, `MatInterpolate()` will be used if 2453bb7acecfSBarry Smith the coarse `DM` does not have a specialized implementation. 24541f3379b2SToby Isaac - coarseSol - solution on the coarse mesh 24551f3379b2SToby Isaac 24564165533cSJose E. Roman Output Parameter: 24571f3379b2SToby Isaac . fineSol - the interpolation of coarseSol to the fine mesh 24581f3379b2SToby Isaac 24591f3379b2SToby Isaac Level: developer 24601f3379b2SToby Isaac 2461bb7acecfSBarry Smith Note: 2462bb7acecfSBarry Smith This function exists because the interpolation of a solution vector between meshes is not always a linear 24631f3379b2SToby Isaac map. For example, if a boundary value problem has an inhomogeneous Dirichlet boundary condition that is compressed 24641f3379b2SToby Isaac out of the solution vector. Or if interpolation is inherently a nonlinear operation, such as a method using 24651f3379b2SToby Isaac slope-limiting reconstruction. 24661f3379b2SToby Isaac 2467*73ff1848SBarry Smith Developer Note: 2468bb7acecfSBarry Smith This doesn't just interpolate "solutions" so its API name is questionable. 2469bb7acecfSBarry Smith 24701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMInterpolate()`, `DMCreateInterpolation()` 24711f3379b2SToby Isaac @*/ 2472d71ae5a4SJacob Faibussowitsch PetscErrorCode DMInterpolateSolution(DM coarse, DM fine, Mat interp, Vec coarseSol, Vec fineSol) 2473d71ae5a4SJacob Faibussowitsch { 24741f3379b2SToby Isaac PetscErrorCode (*interpsol)(DM, DM, Mat, Vec, Vec) = NULL; 24751f3379b2SToby Isaac 24761f3379b2SToby Isaac PetscFunctionBegin; 24771f3379b2SToby Isaac PetscValidHeaderSpecific(coarse, DM_CLASSID, 1); 24781f3379b2SToby Isaac if (interp) PetscValidHeaderSpecific(interp, MAT_CLASSID, 3); 24791f3379b2SToby Isaac PetscValidHeaderSpecific(coarseSol, VEC_CLASSID, 4); 24801f3379b2SToby Isaac PetscValidHeaderSpecific(fineSol, VEC_CLASSID, 5); 24811f3379b2SToby Isaac 24829566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)coarse, "DMInterpolateSolution_C", &interpsol)); 24831f3379b2SToby Isaac if (interpsol) { 24849566063dSJacob Faibussowitsch PetscCall((*interpsol)(coarse, fine, interp, coarseSol, fineSol)); 24851f3379b2SToby Isaac } else if (interp) { 24869566063dSJacob Faibussowitsch PetscCall(MatInterpolate(interp, coarseSol, fineSol)); 248798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)coarse), PETSC_ERR_SUP, "DM %s does not implement DMInterpolateSolution()", ((PetscObject)coarse)->type_name); 24883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24891f3379b2SToby Isaac } 24901f3379b2SToby Isaac 24911f3379b2SToby Isaac /*@ 2492bb7acecfSBarry Smith DMGetRefineLevel - Gets the number of refinements that have generated this `DM` from some initial `DM`. 2493eb3f98d2SBarry Smith 2494eb3f98d2SBarry Smith Not Collective 2495eb3f98d2SBarry Smith 2496eb3f98d2SBarry Smith Input Parameter: 2497bb7acecfSBarry Smith . dm - the `DM` object 2498eb3f98d2SBarry Smith 2499eb3f98d2SBarry Smith Output Parameter: 2500eb3f98d2SBarry Smith . level - number of refinements 2501eb3f98d2SBarry Smith 2502eb3f98d2SBarry Smith Level: developer 2503eb3f98d2SBarry Smith 2504bb7acecfSBarry Smith Note: 2505bb7acecfSBarry Smith This can be used, by example, to set the number of coarser levels associated with this `DM` for a multigrid solver. 2506bb7acecfSBarry Smith 25071cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2508eb3f98d2SBarry Smith @*/ 2509d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetRefineLevel(DM dm, PetscInt *level) 2510d71ae5a4SJacob Faibussowitsch { 2511eb3f98d2SBarry Smith PetscFunctionBegin; 2512eb3f98d2SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2513eb3f98d2SBarry Smith *level = dm->levelup; 25143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2515eb3f98d2SBarry Smith } 2516eb3f98d2SBarry Smith 2517fef3a512SBarry Smith /*@ 2518bb7acecfSBarry Smith DMSetRefineLevel - Sets the number of refinements that have generated this `DM`. 2519fef3a512SBarry Smith 2520fef3a512SBarry Smith Not Collective 2521fef3a512SBarry Smith 2522d8d19677SJose E. Roman Input Parameters: 2523bb7acecfSBarry Smith + dm - the `DM` object 2524fef3a512SBarry Smith - level - number of refinements 2525fef3a512SBarry Smith 2526fef3a512SBarry Smith Level: advanced 2527fef3a512SBarry Smith 252895452b02SPatrick Sanan Notes: 2529bb7acecfSBarry Smith This value is used by `PCMG` to determine how many multigrid levels to use 2530fef3a512SBarry Smith 2531bb7acecfSBarry Smith The values are usually set automatically by the process that is causing the refinements of an initial `DM` by calling this routine. 2532bb7acecfSBarry Smith 25331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRefineLevel()`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 2534fef3a512SBarry Smith @*/ 2535d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetRefineLevel(DM dm, PetscInt level) 2536d71ae5a4SJacob Faibussowitsch { 2537fef3a512SBarry Smith PetscFunctionBegin; 2538fef3a512SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2539fef3a512SBarry Smith dm->levelup = level; 25403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2541fef3a512SBarry Smith } 2542fef3a512SBarry Smith 2543d410b0cfSMatthew G. Knepley /*@ 2544bb7acecfSBarry Smith DMExtrude - Extrude a `DM` object from a surface 2545d410b0cfSMatthew G. Knepley 254620f4b53cSBarry Smith Collective 2547d410b0cfSMatthew G. Knepley 2548f1a722f8SMatthew G. Knepley Input Parameters: 2549bb7acecfSBarry Smith + dm - the `DM` object 2550d410b0cfSMatthew G. Knepley - layers - the number of extruded cell layers 2551d410b0cfSMatthew G. Knepley 2552d410b0cfSMatthew G. Knepley Output Parameter: 255320f4b53cSBarry Smith . dme - the extruded `DM`, or `NULL` 2554d410b0cfSMatthew G. Knepley 2555d410b0cfSMatthew G. Knepley Level: developer 2556d410b0cfSMatthew G. Knepley 255720f4b53cSBarry Smith Note: 255820f4b53cSBarry Smith If no extrusion was done, the return value is `NULL` 255920f4b53cSBarry Smith 25601cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()` 2561d410b0cfSMatthew G. Knepley @*/ 2562d71ae5a4SJacob Faibussowitsch PetscErrorCode DMExtrude(DM dm, PetscInt layers, DM *dme) 2563d71ae5a4SJacob Faibussowitsch { 2564d410b0cfSMatthew G. Knepley PetscFunctionBegin; 2565d410b0cfSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2566dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, extrude, layers, dme); 2567d410b0cfSMatthew G. Knepley if (*dme) { 2568d410b0cfSMatthew G. Knepley (*dme)->ops->creatematrix = dm->ops->creatematrix; 25699566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dme)); 2570d410b0cfSMatthew G. Knepley (*dme)->ctx = dm->ctx; 25719566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dme, dm->mattype)); 2572d410b0cfSMatthew G. Knepley } 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2574d410b0cfSMatthew G. Knepley } 2575d410b0cfSMatthew G. Knepley 2576d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformDM_Internal(DM dm, DM *tdm) 2577d71ae5a4SJacob Faibussowitsch { 2578ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2579ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25804f572ea9SToby Isaac PetscAssertPointer(tdm, 2); 2581ca3d3a14SMatthew G. Knepley *tdm = dm->transformDM; 25823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2583ca3d3a14SMatthew G. Knepley } 2584ca3d3a14SMatthew G. Knepley 2585d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasisTransformVec_Internal(DM dm, Vec *tv) 2586d71ae5a4SJacob Faibussowitsch { 2587ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2588ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 25894f572ea9SToby Isaac PetscAssertPointer(tv, 2); 2590ca3d3a14SMatthew G. Knepley *tv = dm->transform; 25913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2592ca3d3a14SMatthew G. Knepley } 2593ca3d3a14SMatthew G. Knepley 2594ca3d3a14SMatthew G. Knepley /*@ 2595bb7acecfSBarry Smith DMHasBasisTransform - Whether the `DM` employs a basis transformation from functions in global vectors to functions in local vectors 2596ca3d3a14SMatthew G. Knepley 2597ca3d3a14SMatthew G. Knepley Input Parameter: 259820f4b53cSBarry Smith . dm - The `DM` 2599ca3d3a14SMatthew G. Knepley 2600ca3d3a14SMatthew G. Knepley Output Parameter: 260120f4b53cSBarry Smith . flg - `PETSC_TRUE` if a basis transformation should be done 2602ca3d3a14SMatthew G. Knepley 2603ca3d3a14SMatthew G. Knepley Level: developer 2604ca3d3a14SMatthew G. Knepley 26051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPlexGlobalToLocalBasis()`, `DMPlexLocalToGlobalBasis()`, `DMPlexCreateBasisRotation()` 2606ca3d3a14SMatthew G. Knepley @*/ 2607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasBasisTransform(DM dm, PetscBool *flg) 2608d71ae5a4SJacob Faibussowitsch { 2609ca3d3a14SMatthew G. Knepley Vec tv; 2610ca3d3a14SMatthew G. Knepley 2611ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2612ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 26134f572ea9SToby Isaac PetscAssertPointer(flg, 2); 26149566063dSJacob Faibussowitsch PetscCall(DMGetBasisTransformVec_Internal(dm, &tv)); 2615ca3d3a14SMatthew G. Knepley *flg = tv ? PETSC_TRUE : PETSC_FALSE; 26163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2617ca3d3a14SMatthew G. Knepley } 2618ca3d3a14SMatthew G. Knepley 2619d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConstructBasisTransform_Internal(DM dm) 2620d71ae5a4SJacob Faibussowitsch { 2621ca3d3a14SMatthew G. Knepley PetscSection s, ts; 2622ca3d3a14SMatthew G. Knepley PetscScalar *ta; 2623ca3d3a14SMatthew G. Knepley PetscInt cdim, pStart, pEnd, p, Nf, f, Nc, dof; 2624ca3d3a14SMatthew G. Knepley 2625ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 26269566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &cdim)); 26279566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 26289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 26299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 26309566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->transformDM)); 26319566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm->transformDM, &ts)); 26329566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(ts, Nf)); 26339566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(ts, pStart, pEnd)); 2634ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldComponents(s, f, &Nc)); 2636ca3d3a14SMatthew G. Knepley /* We could start to label fields by their transformation properties */ 2637ca3d3a14SMatthew G. Knepley if (Nc != cdim) continue; 2638ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 26399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &dof)); 2640ca3d3a14SMatthew G. Knepley if (!dof) continue; 26419566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(ts, p, f, PetscSqr(cdim))); 26429566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(ts, p, PetscSqr(cdim))); 2643ca3d3a14SMatthew G. Knepley } 2644ca3d3a14SMatthew G. Knepley } 26459566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(ts)); 26469566063dSJacob Faibussowitsch PetscCall(DMCreateLocalVector(dm->transformDM, &dm->transform)); 26479566063dSJacob Faibussowitsch PetscCall(VecGetArray(dm->transform, &ta)); 2648ca3d3a14SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 2649ca3d3a14SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 26509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(ts, p, f, &dof)); 2651ca3d3a14SMatthew G. Knepley if (dof) { 2652ca3d3a14SMatthew G. Knepley PetscReal x[3] = {0.0, 0.0, 0.0}; 2653ca3d3a14SMatthew G. Knepley PetscScalar *tva; 2654ca3d3a14SMatthew G. Knepley const PetscScalar *A; 2655ca3d3a14SMatthew G. Knepley 2656ca3d3a14SMatthew G. Knepley /* TODO Get quadrature point for this dual basis vector for coordinate */ 26579566063dSJacob Faibussowitsch PetscCall((*dm->transformGetMatrix)(dm, x, PETSC_TRUE, &A, dm->transformCtx)); 26589566063dSJacob Faibussowitsch PetscCall(DMPlexPointLocalFieldRef(dm->transformDM, p, f, ta, (void *)&tva)); 26599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tva, A, PetscSqr(cdim))); 2660ca3d3a14SMatthew G. Knepley } 2661ca3d3a14SMatthew G. Knepley } 2662ca3d3a14SMatthew G. Knepley } 26639566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(dm->transform, &ta)); 26643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2665ca3d3a14SMatthew G. Knepley } 2666ca3d3a14SMatthew G. Knepley 2667d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyTransform(DM dm, DM newdm) 2668d71ae5a4SJacob Faibussowitsch { 2669ca3d3a14SMatthew G. Knepley PetscFunctionBegin; 2670ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2671ca3d3a14SMatthew G. Knepley PetscValidHeaderSpecific(newdm, DM_CLASSID, 2); 2672ca3d3a14SMatthew G. Knepley newdm->transformCtx = dm->transformCtx; 2673ca3d3a14SMatthew G. Knepley newdm->transformSetUp = dm->transformSetUp; 2674ca3d3a14SMatthew G. Knepley newdm->transformDestroy = NULL; 2675ca3d3a14SMatthew G. Knepley newdm->transformGetMatrix = dm->transformGetMatrix; 26769566063dSJacob Faibussowitsch if (newdm->transformSetUp) PetscCall(DMConstructBasisTransform_Internal(newdm)); 26773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2678ca3d3a14SMatthew G. Knepley } 2679ca3d3a14SMatthew G. Knepley 2680bb9467b5SJed Brown /*@C 2681bb7acecfSBarry Smith DMGlobalToLocalHookAdd - adds a callback to be run when `DMGlobalToLocal()` is called 2682baf369e7SPeter Brune 268320f4b53cSBarry Smith Logically Collective 2684baf369e7SPeter Brune 26854165533cSJose E. Roman Input Parameters: 2686bb7acecfSBarry Smith + dm - the `DM` 2687bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMGlobalToLocalBegin()` 2688bb7acecfSBarry Smith . endhook - function to run after `DMGlobalToLocalEnd()` has completed 268920f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2690baf369e7SPeter Brune 269120f4b53cSBarry Smith Calling sequence of `beginhook`: 2692a4e35b19SJacob Faibussowitsch + dm - global `DM` 2693baf369e7SPeter Brune . g - global vector 2694baf369e7SPeter Brune . mode - mode 2695baf369e7SPeter Brune . l - local vector 2696baf369e7SPeter Brune - ctx - optional user-defined function context 2697baf369e7SPeter Brune 269820f4b53cSBarry Smith Calling sequence of `endhook`: 2699a4e35b19SJacob Faibussowitsch + dm - global `DM` 2700a4e35b19SJacob Faibussowitsch . g - global vector 2701a4e35b19SJacob Faibussowitsch . mode - mode 2702a4e35b19SJacob Faibussowitsch . l - local vector 2703baf369e7SPeter Brune - ctx - optional user-defined function context 2704baf369e7SPeter Brune 2705baf369e7SPeter Brune Level: advanced 2706baf369e7SPeter Brune 2707bb7acecfSBarry Smith Note: 2708bb7acecfSBarry Smith The hook may be used to provide, for example, values that represent boundary conditions in the local vectors that do not exist on the global vector. 2709bb7acecfSBarry Smith 27101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocal()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2711baf369e7SPeter Brune @*/ 2712a4e35b19SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), PetscErrorCode (*endhook)(DM dm, Vec g, InsertMode mode, Vec l, void *ctx), void *ctx) 2713d71ae5a4SJacob Faibussowitsch { 2714baf369e7SPeter Brune DMGlobalToLocalHookLink link, *p; 2715baf369e7SPeter Brune 2716baf369e7SPeter Brune PetscFunctionBegin; 2717baf369e7SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2718baf369e7SPeter Brune for (p = &dm->gtolhook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 27199566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2720baf369e7SPeter Brune link->beginhook = beginhook; 2721baf369e7SPeter Brune link->endhook = endhook; 2722baf369e7SPeter Brune link->ctx = ctx; 27230298fd71SBarry Smith link->next = NULL; 2724baf369e7SPeter Brune *p = link; 27253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2726baf369e7SPeter Brune } 2727baf369e7SPeter Brune 2728d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMGlobalToLocalHook_Constraints(DM dm, Vec g, InsertMode mode, Vec l, void *ctx) 2729d71ae5a4SJacob Faibussowitsch { 27304c274da1SToby Isaac Mat cMat; 273179769bd5SJed Brown Vec cVec, cBias; 27324c274da1SToby Isaac PetscSection section, cSec; 27334c274da1SToby Isaac PetscInt pStart, pEnd, p, dof; 27344c274da1SToby Isaac 27354c274da1SToby Isaac PetscFunctionBegin; 2736a4e35b19SJacob Faibussowitsch (void)g; 2737a4e35b19SJacob Faibussowitsch (void)ctx; 27384c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 27399566063dSJacob Faibussowitsch PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, &cBias)); 27404c274da1SToby Isaac if (cMat && (mode == INSERT_VALUES || mode == INSERT_ALL_VALUES || mode == INSERT_BC_VALUES)) { 27415db9a05bSToby Isaac PetscInt nRows; 27425db9a05bSToby Isaac 27439566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 27443ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 27459566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 27469566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 27479566063dSJacob Faibussowitsch PetscCall(MatMult(cMat, l, cVec)); 27489566063dSJacob Faibussowitsch if (cBias) PetscCall(VecAXPY(cVec, 1., cBias)); 27499566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 27504c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 27519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 27524c274da1SToby Isaac if (dof) { 27534c274da1SToby Isaac PetscScalar *vals; 27549566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(cVec, cSec, p, &vals)); 27559566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(l, section, p, vals, INSERT_ALL_VALUES)); 27564c274da1SToby Isaac } 27574c274da1SToby Isaac } 27589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 27594c274da1SToby Isaac } 27603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27614c274da1SToby Isaac } 27624c274da1SToby Isaac 276347c6ae99SBarry Smith /*@ 276401729b5cSPatrick Sanan DMGlobalToLocal - update local vectors from global vector 276501729b5cSPatrick Sanan 276620f4b53cSBarry Smith Neighbor-wise Collective 276701729b5cSPatrick Sanan 276801729b5cSPatrick Sanan Input Parameters: 2769bb7acecfSBarry Smith + dm - the `DM` object 277001729b5cSPatrick Sanan . g - the global vector 2771bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 277201729b5cSPatrick Sanan - l - the local vector 277301729b5cSPatrick Sanan 277420f4b53cSBarry Smith Level: beginner 277520f4b53cSBarry Smith 277601729b5cSPatrick Sanan Notes: 2777bb7acecfSBarry Smith The communication involved in this update can be overlapped with computation by instead using 2778bb7acecfSBarry Smith `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()`. 2779bb7acecfSBarry Smith 2780bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 278101729b5cSPatrick Sanan 27821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGlobalToLocalHookAdd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, 278360225df5SJacob Faibussowitsch `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, 2784bb7acecfSBarry Smith `DMGlobalToLocalBegin()` `DMGlobalToLocalEnd()` 278501729b5cSPatrick Sanan @*/ 2786d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocal(DM dm, Vec g, InsertMode mode, Vec l) 2787d71ae5a4SJacob Faibussowitsch { 278801729b5cSPatrick Sanan PetscFunctionBegin; 27899566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, g, mode, l)); 27909566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, g, mode, l)); 27913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279201729b5cSPatrick Sanan } 279301729b5cSPatrick Sanan 279401729b5cSPatrick Sanan /*@ 279547c6ae99SBarry Smith DMGlobalToLocalBegin - Begins updating local vectors from global vector 279647c6ae99SBarry Smith 279720f4b53cSBarry Smith Neighbor-wise Collective 279847c6ae99SBarry Smith 279947c6ae99SBarry Smith Input Parameters: 2800bb7acecfSBarry Smith + dm - the `DM` object 280147c6ae99SBarry Smith . g - the global vector 2802bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 280347c6ae99SBarry Smith - l - the local vector 280447c6ae99SBarry Smith 280501729b5cSPatrick Sanan Level: intermediate 280647c6ae99SBarry Smith 2807bb7acecfSBarry Smith Notes: 2808bb7acecfSBarry Smith The operation is completed with `DMGlobalToLocalEnd()` 2809bb7acecfSBarry Smith 2810bb7acecfSBarry Smith One can perform local computations between the `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` to overlap communication and computation 2811bb7acecfSBarry Smith 2812bb7acecfSBarry Smith `DMGlobalToLocal()` is a short form of `DMGlobalToLocalBegin()` and `DMGlobalToLocalEnd()` 2813bb7acecfSBarry Smith 2814bb7acecfSBarry Smith `DMGlobalToLocalHookAdd()` may be used to provide additional operations that are performed during the update process. 2815bb7acecfSBarry Smith 281660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 281747c6ae99SBarry Smith @*/ 2818d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 2819d71ae5a4SJacob Faibussowitsch { 28207128ae9fSMatthew G Knepley PetscSF sf; 2821baf369e7SPeter Brune DMGlobalToLocalHookLink link; 282247c6ae99SBarry Smith 282347c6ae99SBarry Smith PetscFunctionBegin; 2824171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2825baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28261baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, g, mode, l, link->ctx)); 2827baf369e7SPeter Brune } 28289566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28297128ae9fSMatthew G Knepley if (sf) { 2830ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2831ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2832d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 28337128ae9fSMatthew G Knepley 28347a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28359566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28369566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(sf, MPIU_SCALAR, gmtype, gArray, lmtype, lArray, MPI_REPLACE)); 28389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28407128ae9fSMatthew G Knepley } else { 2841fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28427128ae9fSMatthew G Knepley } 28433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284447c6ae99SBarry Smith } 284547c6ae99SBarry Smith 284647c6ae99SBarry Smith /*@ 284747c6ae99SBarry Smith DMGlobalToLocalEnd - Ends updating local vectors from global vector 284847c6ae99SBarry Smith 284920f4b53cSBarry Smith Neighbor-wise Collective 285047c6ae99SBarry Smith 285147c6ae99SBarry Smith Input Parameters: 2852bb7acecfSBarry Smith + dm - the `DM` object 285347c6ae99SBarry Smith . g - the global vector 2854bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 285547c6ae99SBarry Smith - l - the local vector 285647c6ae99SBarry Smith 285701729b5cSPatrick Sanan Level: intermediate 285847c6ae99SBarry Smith 2859bb7acecfSBarry Smith Note: 2860bb7acecfSBarry Smith See `DMGlobalToLocalBegin()` for details. 2861bb7acecfSBarry Smith 286260225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMLocalToGlobalBegin()`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()` 286347c6ae99SBarry Smith @*/ 2864d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGlobalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 2865d71ae5a4SJacob Faibussowitsch { 28667128ae9fSMatthew G Knepley PetscSF sf; 2867ae5cfb4aSMatthew G. Knepley const PetscScalar *gArray; 2868ae5cfb4aSMatthew G. Knepley PetscScalar *lArray; 2869ca3d3a14SMatthew G. Knepley PetscBool transform; 2870baf369e7SPeter Brune DMGlobalToLocalHookLink link; 2871d0295fc0SJunchao Zhang PetscMemType lmtype, gmtype; 287247c6ae99SBarry Smith 287347c6ae99SBarry Smith PetscFunctionBegin; 2874171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 28759566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 28769566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 28777128ae9fSMatthew G Knepley if (sf) { 28787a8be351SBarry Smith PetscCheck(mode != ADD_VALUES, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", (int)mode); 28797128ae9fSMatthew G Knepley 28809566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(l, &lArray, &lmtype)); 28819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(g, &gArray, &gmtype)); 28829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, gArray, lArray, MPI_REPLACE)); 28839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(l, &lArray)); 28849566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(g, &gArray)); 28859566063dSJacob Faibussowitsch if (transform) PetscCall(DMPlexGlobalToLocalBasis(dm, l)); 28867128ae9fSMatthew G Knepley } else { 2887fa1e479aSStefano Zampini PetscUseTypeMethod(dm, globaltolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 28887128ae9fSMatthew G Knepley } 28899566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalHook_Constraints(dm, g, mode, l, NULL)); 2890baf369e7SPeter Brune for (link = dm->gtolhook; link; link = link->next) { 28919566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 2892baf369e7SPeter Brune } 28933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 289447c6ae99SBarry Smith } 289547c6ae99SBarry Smith 2896d4d07f1eSToby Isaac /*@C 2897d4d07f1eSToby Isaac DMLocalToGlobalHookAdd - adds a callback to be run when a local to global is called 2898d4d07f1eSToby Isaac 289920f4b53cSBarry Smith Logically Collective 2900d4d07f1eSToby Isaac 29014165533cSJose E. Roman Input Parameters: 2902bb7acecfSBarry Smith + dm - the `DM` 2903bb7acecfSBarry Smith . beginhook - function to run at the beginning of `DMLocalToGlobalBegin()` 2904bb7acecfSBarry Smith . endhook - function to run after `DMLocalToGlobalEnd()` has completed 290520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 2906d4d07f1eSToby Isaac 290720f4b53cSBarry Smith Calling sequence of `beginhook`: 2908a4e35b19SJacob Faibussowitsch + global - global `DM` 2909d4d07f1eSToby Isaac . l - local vector 2910d4d07f1eSToby Isaac . mode - mode 2911d4d07f1eSToby Isaac . g - global vector 2912d4d07f1eSToby Isaac - ctx - optional user-defined function context 2913d4d07f1eSToby Isaac 291420f4b53cSBarry Smith Calling sequence of `endhook`: 2915bb7acecfSBarry Smith + global - global `DM` 2916d4d07f1eSToby Isaac . l - local vector 2917d4d07f1eSToby Isaac . mode - mode 2918d4d07f1eSToby Isaac . g - global vector 2919d4d07f1eSToby Isaac - ctx - optional user-defined function context 2920d4d07f1eSToby Isaac 2921d4d07f1eSToby Isaac Level: advanced 2922d4d07f1eSToby Isaac 29231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMRefineHookAdd()`, `DMGlobalToLocalHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 2924d4d07f1eSToby Isaac @*/ 2925a4e35b19SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalHookAdd(DM dm, PetscErrorCode (*beginhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), PetscErrorCode (*endhook)(DM global, Vec l, InsertMode mode, Vec g, void *ctx), void *ctx) 2926d71ae5a4SJacob Faibussowitsch { 2927d4d07f1eSToby Isaac DMLocalToGlobalHookLink link, *p; 2928d4d07f1eSToby Isaac 2929d4d07f1eSToby Isaac PetscFunctionBegin; 2930d4d07f1eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2931d4d07f1eSToby Isaac for (p = &dm->ltoghook; *p; p = &(*p)->next) { } /* Scan to the end of the current list of hooks */ 29329566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 2933d4d07f1eSToby Isaac link->beginhook = beginhook; 2934d4d07f1eSToby Isaac link->endhook = endhook; 2935d4d07f1eSToby Isaac link->ctx = ctx; 2936d4d07f1eSToby Isaac link->next = NULL; 2937d4d07f1eSToby Isaac *p = link; 29383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2939d4d07f1eSToby Isaac } 2940d4d07f1eSToby Isaac 2941d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMLocalToGlobalHook_Constraints(DM dm, Vec l, InsertMode mode, Vec g, void *ctx) 2942d71ae5a4SJacob Faibussowitsch { 29434c274da1SToby Isaac PetscFunctionBegin; 2944a4e35b19SJacob Faibussowitsch (void)g; 2945a4e35b19SJacob Faibussowitsch (void)ctx; 29464c274da1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 29472b6b7d09SToby Isaac if (mode == ADD_VALUES || mode == ADD_ALL_VALUES || mode == ADD_BC_VALUES) { 29482b6b7d09SToby Isaac Mat cMat; 29492b6b7d09SToby Isaac Vec cVec; 29505db9a05bSToby Isaac PetscInt nRows; 29512b6b7d09SToby Isaac PetscSection section, cSec; 29522b6b7d09SToby Isaac PetscInt pStart, pEnd, p, dof; 29532b6b7d09SToby Isaac 29542b6b7d09SToby Isaac PetscCall(DMGetDefaultConstraints(dm, &cSec, &cMat, NULL)); 29552b6b7d09SToby Isaac if (!cMat) PetscFunctionReturn(PETSC_SUCCESS); 29565db9a05bSToby Isaac 29579566063dSJacob Faibussowitsch PetscCall(MatGetSize(cMat, &nRows, NULL)); 29583ba16761SJacob Faibussowitsch if (nRows <= 0) PetscFunctionReturn(PETSC_SUCCESS); 29599566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 29609566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(cMat, NULL, &cVec)); 29619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cSec, &pStart, &pEnd)); 29624c274da1SToby Isaac for (p = pStart; p < pEnd; p++) { 29639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cSec, p, &dof)); 29644c274da1SToby Isaac if (dof) { 29654c274da1SToby Isaac PetscInt d; 29664c274da1SToby Isaac PetscScalar *vals; 29679566063dSJacob Faibussowitsch PetscCall(VecGetValuesSection(l, section, p, &vals)); 29689566063dSJacob Faibussowitsch PetscCall(VecSetValuesSection(cVec, cSec, p, vals, mode)); 29694c274da1SToby Isaac /* for this to be the true transpose, we have to zero the values that 29704c274da1SToby Isaac * we just extracted */ 2971ad540459SPierre Jolivet for (d = 0; d < dof; d++) vals[d] = 0.; 29724c274da1SToby Isaac } 29734c274da1SToby Isaac } 29749566063dSJacob Faibussowitsch PetscCall(MatMultTransposeAdd(cMat, cVec, l, l)); 29759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cVec)); 29764c274da1SToby Isaac } 29773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29784c274da1SToby Isaac } 297901729b5cSPatrick Sanan /*@ 298001729b5cSPatrick Sanan DMLocalToGlobal - updates global vectors from local vectors 298101729b5cSPatrick Sanan 298220f4b53cSBarry Smith Neighbor-wise Collective 298301729b5cSPatrick Sanan 298401729b5cSPatrick Sanan Input Parameters: 2985bb7acecfSBarry Smith + dm - the `DM` object 298601729b5cSPatrick Sanan . l - the local vector 2987bb7acecfSBarry Smith . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 298801729b5cSPatrick Sanan - g - the global vector 298901729b5cSPatrick Sanan 299020f4b53cSBarry Smith Level: beginner 299120f4b53cSBarry Smith 299201729b5cSPatrick Sanan Notes: 299301729b5cSPatrick Sanan The communication involved in this update can be overlapped with computation by using 2994bb7acecfSBarry Smith `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()`. 299501729b5cSPatrick Sanan 2996bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 2997bb7acecfSBarry Smith 2998bb7acecfSBarry Smith `INSERT_VALUES` is not supported for `DMDA`; in that case simply compute the values directly into a global vector instead of a local one. 2999bb7acecfSBarry Smith 3000bb7acecfSBarry Smith Use `DMLocalToGlobalHookAdd()` to add additional operations that are performed on the data during the update process 300101729b5cSPatrick Sanan 30021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()`, `DMLocalToGlobalHookAdd()`, `DMGlobaToLocallHookAdd()` 300301729b5cSPatrick Sanan @*/ 3004d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobal(DM dm, Vec l, InsertMode mode, Vec g) 3005d71ae5a4SJacob Faibussowitsch { 300601729b5cSPatrick Sanan PetscFunctionBegin; 30079566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, l, mode, g)); 30089566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, l, mode, g)); 30093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 301001729b5cSPatrick Sanan } 30114c274da1SToby Isaac 301247c6ae99SBarry Smith /*@ 301301729b5cSPatrick Sanan DMLocalToGlobalBegin - begins updating global vectors from local vectors 30149a42bb27SBarry Smith 301520f4b53cSBarry Smith Neighbor-wise Collective 30169a42bb27SBarry Smith 30179a42bb27SBarry Smith Input Parameters: 3018bb7acecfSBarry Smith + dm - the `DM` object 3019f6813fd5SJed Brown . l - the local vector 3020aa624791SPierre Jolivet . mode - if `INSERT_VALUES` then no parallel communication is used, if `ADD_VALUES` then all ghost points from the same base point accumulate into that base point. 30211eb28f2eSBarry Smith - g - the global vector 30229a42bb27SBarry Smith 302320f4b53cSBarry Smith Level: intermediate 302420f4b53cSBarry Smith 302595452b02SPatrick Sanan Notes: 3026bb7acecfSBarry Smith In the `ADD_VALUES` case you normally would zero the receiving vector before beginning this operation. 3027bb7acecfSBarry Smith 3028bb7acecfSBarry Smith `INSERT_VALUES is` not supported for `DMDA`, in that case simply compute the values directly into a global vector instead of a local one. 3029bb7acecfSBarry Smith 3030bb7acecfSBarry Smith Use `DMLocalToGlobalEnd()` to complete the communication process. 3031bb7acecfSBarry Smith 3032bb7acecfSBarry Smith `DMLocalToGlobal()` is a short form of `DMLocalToGlobalBegin()` and `DMLocalToGlobalEnd()` 3033bb7acecfSBarry Smith 3034bb7acecfSBarry Smith `DMLocalToGlobalHookAdd()` may be used to provide additional operations that are performed during the update process. 30359a42bb27SBarry Smith 30361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobal()`, `DMLocalToGlobalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocal()`, `DMGlobalToLocalEnd()`, `DMGlobalToLocalBegin()` 30379a42bb27SBarry Smith @*/ 3038d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalBegin(DM dm, Vec l, InsertMode mode, Vec g) 3039d71ae5a4SJacob Faibussowitsch { 30407128ae9fSMatthew G Knepley PetscSF sf; 304184330215SMatthew G. Knepley PetscSection s, gs; 3042d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3043ca3d3a14SMatthew G. Knepley Vec tmpl; 3044ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3045ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3046fa88e482SJed Brown PetscBool isInsert, transform, l_inplace = PETSC_FALSE, g_inplace = PETSC_FALSE; 3047d0295fc0SJunchao Zhang PetscMemType lmtype = PETSC_MEMTYPE_HOST, gmtype = PETSC_MEMTYPE_HOST; 30489a42bb27SBarry Smith 30499a42bb27SBarry Smith PetscFunctionBegin; 3050171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3051d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 30521baa6e33SBarry Smith if (link->beginhook) PetscCall((*link->beginhook)(dm, l, mode, g, link->ctx)); 3053d4d07f1eSToby Isaac } 30549566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalHook_Constraints(dm, l, mode, g, NULL)); 30559566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 30569566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 30577128ae9fSMatthew G Knepley switch (mode) { 30587128ae9fSMatthew G Knepley case INSERT_VALUES: 30597128ae9fSMatthew G Knepley case INSERT_ALL_VALUES: 3060d71ae5a4SJacob Faibussowitsch case INSERT_BC_VALUES: 3061d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3062d71ae5a4SJacob Faibussowitsch break; 30637128ae9fSMatthew G Knepley case ADD_VALUES: 30647128ae9fSMatthew G Knepley case ADD_ALL_VALUES: 3065d71ae5a4SJacob Faibussowitsch case ADD_BC_VALUES: 3066d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3067d71ae5a4SJacob Faibussowitsch break; 3068d71ae5a4SJacob Faibussowitsch default: 3069d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 30707128ae9fSMatthew G Knepley } 3071ca3d3a14SMatthew G. Knepley if ((sf && !isInsert) || (s && isInsert)) { 30729566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3073ca3d3a14SMatthew G. Knepley if (transform) { 30749566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 30759566063dSJacob Faibussowitsch PetscCall(VecCopy(l, tmpl)); 30769566063dSJacob Faibussowitsch PetscCall(DMPlexLocalToGlobalBasis(dm, tmpl)); 30779566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3078fa88e482SJed Brown } else if (isInsert) { 30799566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l, &lArray)); 3080fa88e482SJed Brown } else { 30819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, &lmtype)); 3082fa88e482SJed Brown l_inplace = PETSC_TRUE; 3083ca3d3a14SMatthew G. Knepley } 3084fa88e482SJed Brown if (s && isInsert) { 30859566063dSJacob Faibussowitsch PetscCall(VecGetArray(g, &gArray)); 3086fa88e482SJed Brown } else { 30879566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, &gmtype)); 3088fa88e482SJed Brown g_inplace = PETSC_TRUE; 3089fa88e482SJed Brown } 3090ca3d3a14SMatthew G. Knepley if (sf && !isInsert) { 30919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(sf, MPIU_SCALAR, lmtype, lArray, gmtype, gArray, MPIU_SUM)); 309284330215SMatthew G. Knepley } else if (s && isInsert) { 309384330215SMatthew G. Knepley PetscInt gStart, pStart, pEnd, p; 309484330215SMatthew G. Knepley 30959566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gs)); 30969566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 30979566063dSJacob Faibussowitsch PetscCall(VecGetOwnershipRange(g, &gStart, NULL)); 309884330215SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 3099b3b16f48SMatthew G. Knepley PetscInt dof, gdof, cdof, gcdof, off, goff, d, e; 310084330215SMatthew G. Knepley 31019566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(s, p, &dof)); 31029566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(gs, p, &gdof)); 31039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 31049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(gs, p, &gcdof)); 31059566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 31069566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gs, p, &goff)); 3107b3b16f48SMatthew G. Knepley /* Ignore off-process data and points with no global data */ 310803442857SMatthew G. Knepley if (!gdof || goff < 0) continue; 31097a8be351SBarry Smith PetscCheck(dof == gdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 3110b3b16f48SMatthew G. Knepley /* If no constraints are enforced in the global vector */ 3111b3b16f48SMatthew G. Knepley if (!gcdof) { 311284330215SMatthew G. Knepley for (d = 0; d < dof; ++d) gArray[goff - gStart + d] = lArray[off + d]; 3113b3b16f48SMatthew G. Knepley /* If constraints are enforced in the global vector */ 3114b3b16f48SMatthew G. Knepley } else if (cdof == gcdof) { 311584330215SMatthew G. Knepley const PetscInt *cdofs; 311684330215SMatthew G. Knepley PetscInt cind = 0; 311784330215SMatthew G. Knepley 31189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &cdofs)); 3119b3b16f48SMatthew G. Knepley for (d = 0, e = 0; d < dof; ++d) { 31209371c9d4SSatish Balay if ((cind < cdof) && (d == cdofs[cind])) { 31219371c9d4SSatish Balay ++cind; 31229371c9d4SSatish Balay continue; 31239371c9d4SSatish Balay } 3124b3b16f48SMatthew G. Knepley gArray[goff - gStart + e++] = lArray[off + d]; 312584330215SMatthew G. Knepley } 31267a8be351SBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Inconsistent sizes, p: %" PetscInt_FMT " dof: %" PetscInt_FMT " gdof: %" PetscInt_FMT " cdof: %" PetscInt_FMT " gcdof: %" PetscInt_FMT, p, dof, gdof, cdof, gcdof); 312784330215SMatthew G. Knepley } 3128ca3d3a14SMatthew G. Knepley } 3129fa88e482SJed Brown if (g_inplace) { 31309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 3131fa88e482SJed Brown } else { 31329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(g, &gArray)); 3133fa88e482SJed Brown } 3134ca3d3a14SMatthew G. Knepley if (transform) { 31359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 31369566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3137fa88e482SJed Brown } else if (l_inplace) { 31389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3139ca3d3a14SMatthew G. Knepley } else { 31409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l, &lArray)); 3141ca3d3a14SMatthew G. Knepley } 31427128ae9fSMatthew G Knepley } else { 3143fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalbegin, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 31447128ae9fSMatthew G Knepley } 31453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31469a42bb27SBarry Smith } 31479a42bb27SBarry Smith 31489a42bb27SBarry Smith /*@ 31499a42bb27SBarry Smith DMLocalToGlobalEnd - updates global vectors from local vectors 315047c6ae99SBarry Smith 315120f4b53cSBarry Smith Neighbor-wise Collective 315247c6ae99SBarry Smith 315347c6ae99SBarry Smith Input Parameters: 3154bb7acecfSBarry Smith + dm - the `DM` object 3155f6813fd5SJed Brown . l - the local vector 3156bb7acecfSBarry Smith . mode - `INSERT_VALUES` or `ADD_VALUES` 3157f6813fd5SJed Brown - g - the global vector 315847c6ae99SBarry Smith 315901729b5cSPatrick Sanan Level: intermediate 316047c6ae99SBarry Smith 3161bb7acecfSBarry Smith Note: 3162bb7acecfSBarry Smith See `DMLocalToGlobalBegin()` for full details 3163bb7acecfSBarry Smith 316460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToGlobalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()` 316547c6ae99SBarry Smith @*/ 3166d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToGlobalEnd(DM dm, Vec l, InsertMode mode, Vec g) 3167d71ae5a4SJacob Faibussowitsch { 31687128ae9fSMatthew G Knepley PetscSF sf; 316984330215SMatthew G. Knepley PetscSection s; 3170d4d07f1eSToby Isaac DMLocalToGlobalHookLink link; 3171ca3d3a14SMatthew G. Knepley PetscBool isInsert, transform; 317247c6ae99SBarry Smith 317347c6ae99SBarry Smith PetscFunctionBegin; 3174171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 31759566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &sf)); 31769566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 31777128ae9fSMatthew G Knepley switch (mode) { 31787128ae9fSMatthew G Knepley case INSERT_VALUES: 3179d71ae5a4SJacob Faibussowitsch case INSERT_ALL_VALUES: 3180d71ae5a4SJacob Faibussowitsch isInsert = PETSC_TRUE; 3181d71ae5a4SJacob Faibussowitsch break; 31827128ae9fSMatthew G Knepley case ADD_VALUES: 3183d71ae5a4SJacob Faibussowitsch case ADD_ALL_VALUES: 3184d71ae5a4SJacob Faibussowitsch isInsert = PETSC_FALSE; 3185d71ae5a4SJacob Faibussowitsch break; 3186d71ae5a4SJacob Faibussowitsch default: 3187d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid insertion mode %d", mode); 31887128ae9fSMatthew G Knepley } 318984330215SMatthew G. Knepley if (sf && !isInsert) { 3190ae5cfb4aSMatthew G. Knepley const PetscScalar *lArray; 3191ae5cfb4aSMatthew G. Knepley PetscScalar *gArray; 3192ca3d3a14SMatthew G. Knepley Vec tmpl; 319384330215SMatthew G. Knepley 31949566063dSJacob Faibussowitsch PetscCall(DMHasBasisTransform(dm, &transform)); 3195ca3d3a14SMatthew G. Knepley if (transform) { 31969566063dSJacob Faibussowitsch PetscCall(DMGetNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 31979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(tmpl, &lArray)); 3198ca3d3a14SMatthew G. Knepley } else { 31999566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(l, &lArray, NULL)); 3200ca3d3a14SMatthew G. Knepley } 32019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(g, &gArray, NULL)); 32029566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_SCALAR, lArray, gArray, MPIU_SUM)); 3203ca3d3a14SMatthew G. Knepley if (transform) { 32049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(tmpl, &lArray)); 32059566063dSJacob Faibussowitsch PetscCall(DMRestoreNamedLocalVector(dm, "__petsc_dm_transform_local_copy", &tmpl)); 3206ca3d3a14SMatthew G. Knepley } else { 32079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(l, &lArray)); 3208ca3d3a14SMatthew G. Knepley } 32099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(g, &gArray)); 321084330215SMatthew G. Knepley } else if (s && isInsert) { 32117128ae9fSMatthew G Knepley } else { 3212fa1e479aSStefano Zampini PetscUseTypeMethod(dm, localtoglobalend, l, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), g); 32137128ae9fSMatthew G Knepley } 3214d4d07f1eSToby Isaac for (link = dm->ltoghook; link; link = link->next) { 32159566063dSJacob Faibussowitsch if (link->endhook) PetscCall((*link->endhook)(dm, g, mode, l, link->ctx)); 3216d4d07f1eSToby Isaac } 32173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 321847c6ae99SBarry Smith } 321947c6ae99SBarry Smith 3220f089877aSRichard Tran Mills /*@ 3221a4e35b19SJacob Faibussowitsch DMLocalToLocalBegin - Begins the process of mapping values from a local vector (that include 3222a4e35b19SJacob Faibussowitsch ghost points that contain irrelevant values) to another local vector where the ghost points 3223a4e35b19SJacob Faibussowitsch in the second are set correctly from values on other MPI ranks. 3224f089877aSRichard Tran Mills 322520f4b53cSBarry Smith Neighbor-wise Collective 3226f089877aSRichard Tran Mills 3227f089877aSRichard Tran Mills Input Parameters: 3228bb7acecfSBarry Smith + dm - the `DM` object 3229bc0a1609SRichard Tran Mills . g - the original local vector 3230bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3231f089877aSRichard Tran Mills 3232bc0a1609SRichard Tran Mills Output Parameter: 3233bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3234f089877aSRichard Tran Mills 3235f089877aSRichard Tran Mills Level: intermediate 3236f089877aSRichard Tran Mills 3237*73ff1848SBarry Smith Note: 3238a4e35b19SJacob Faibussowitsch Must be followed by `DMLocalToLocalEnd()`. 3239a4e35b19SJacob Faibussowitsch 324060225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalEnd()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3241f089877aSRichard Tran Mills @*/ 3242d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalBegin(DM dm, Vec g, InsertMode mode, Vec l) 3243d71ae5a4SJacob Faibussowitsch { 3244f089877aSRichard Tran Mills PetscFunctionBegin; 3245f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32469f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32479f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32489f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalbegin, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250f089877aSRichard Tran Mills } 3251f089877aSRichard Tran Mills 3252f089877aSRichard Tran Mills /*@ 3253bb7acecfSBarry Smith DMLocalToLocalEnd - Maps from a local vector to another local vector where the ghost 3254bb7acecfSBarry Smith points in the second are set correctly. Must be preceded by `DMLocalToLocalBegin()`. 3255f089877aSRichard Tran Mills 325620f4b53cSBarry Smith Neighbor-wise Collective 3257f089877aSRichard Tran Mills 3258f089877aSRichard Tran Mills Input Parameters: 325960225df5SJacob Faibussowitsch + dm - the `DM` object 3260bc0a1609SRichard Tran Mills . g - the original local vector 3261bb7acecfSBarry Smith - mode - one of `INSERT_VALUES` or `ADD_VALUES` 3262f089877aSRichard Tran Mills 3263bc0a1609SRichard Tran Mills Output Parameter: 3264bc0a1609SRichard Tran Mills . l - the local vector with correct ghost values 3265f089877aSRichard Tran Mills 3266f089877aSRichard Tran Mills Level: intermediate 3267f089877aSRichard Tran Mills 326860225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLocalToLocalBegin()`, `DMCoarsen()`, `DMDestroy()`, `DMView()`, `DMCreateLocalVector()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMGlobalToLocalEnd()`, `DMLocalToGlobalBegin()` 3269f089877aSRichard Tran Mills @*/ 3270d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLocalToLocalEnd(DM dm, Vec g, InsertMode mode, Vec l) 3271d71ae5a4SJacob Faibussowitsch { 3272f089877aSRichard Tran Mills PetscFunctionBegin; 3273f089877aSRichard Tran Mills PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 32749f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(g, VEC_CLASSID, 2); 32759f4ada15SMatthew G. Knepley PetscValidHeaderSpecific(l, VEC_CLASSID, 4); 32769f4ada15SMatthew G. Knepley PetscUseTypeMethod(dm, localtolocalend, g, mode == INSERT_ALL_VALUES ? INSERT_VALUES : (mode == ADD_ALL_VALUES ? ADD_VALUES : mode), l); 32773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3278f089877aSRichard Tran Mills } 3279f089877aSRichard Tran Mills 328047c6ae99SBarry Smith /*@ 3281bb7acecfSBarry Smith DMCoarsen - Coarsens a `DM` object using a standard, non-adaptive coarsening of the underlying mesh 328247c6ae99SBarry Smith 328320f4b53cSBarry Smith Collective 328447c6ae99SBarry Smith 3285d8d19677SJose E. Roman Input Parameters: 3286bb7acecfSBarry Smith + dm - the `DM` object 328720f4b53cSBarry Smith - comm - the communicator to contain the new `DM` object (or `MPI_COMM_NULL`) 328847c6ae99SBarry Smith 328947c6ae99SBarry Smith Output Parameter: 3290bb7acecfSBarry Smith . dmc - the coarsened `DM` 329147c6ae99SBarry Smith 329247c6ae99SBarry Smith Level: developer 329347c6ae99SBarry Smith 3294*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMRefine()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateDomainDecomposition()`, 3295*73ff1848SBarry Smith `DMCoarsenHookAdd()`, `DMCoarsenHookRemove()` 329647c6ae99SBarry Smith @*/ 3297d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsen(DM dm, MPI_Comm comm, DM *dmc) 3298d71ae5a4SJacob Faibussowitsch { 3299b17ce1afSJed Brown DMCoarsenHookLink link; 330047c6ae99SBarry Smith 330147c6ae99SBarry Smith PetscFunctionBegin; 3302171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 33039566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Coarsen, dm, 0, 0, 0)); 3304dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, coarsen, comm, dmc); 3305b9d85ea2SLisandro Dalcin if (*dmc) { 3306a3574896SRichard Tran Mills (*dmc)->bind_below = dm->bind_below; /* Propagate this from parent DM; otherwise -dm_bind_below will be useless for multigrid cases. */ 33079566063dSJacob Faibussowitsch PetscCall(DMSetCoarseDM(dm, *dmc)); 330843842a1eSJed Brown (*dmc)->ops->creatematrix = dm->ops->creatematrix; 33099566063dSJacob Faibussowitsch PetscCall(PetscObjectCopyFortranFunctionPointers((PetscObject)dm, (PetscObject)*dmc)); 3310644e2e5bSBarry Smith (*dmc)->ctx = dm->ctx; 33110598a293SJed Brown (*dmc)->levelup = dm->levelup; 3312656b349aSBarry Smith (*dmc)->leveldown = dm->leveldown + 1; 33139566063dSJacob Faibussowitsch PetscCall(DMSetMatType(*dmc, dm->mattype)); 3314b17ce1afSJed Brown for (link = dm->coarsenhook; link; link = link->next) { 33159566063dSJacob Faibussowitsch if (link->coarsenhook) PetscCall((*link->coarsenhook)(dm, *dmc, link->ctx)); 3316b17ce1afSJed Brown } 3317b9d85ea2SLisandro Dalcin } 33189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Coarsen, dm, 0, 0, 0)); 33197a8be351SBarry Smith PetscCheck(*dmc, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "NULL coarse mesh produced"); 33203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3321b17ce1afSJed Brown } 3322b17ce1afSJed Brown 3323bb9467b5SJed Brown /*@C 3324b17ce1afSJed Brown DMCoarsenHookAdd - adds a callback to be run when restricting a nonlinear problem to the coarse grid 3325b17ce1afSJed Brown 332620f4b53cSBarry Smith Logically Collective; No Fortran Support 3327b17ce1afSJed Brown 33284165533cSJose E. Roman Input Parameters: 3329bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3330b17ce1afSJed Brown . coarsenhook - function to run when setting up a coarser level 3331bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels (called once per `SNESSolve()`) 333220f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3333b17ce1afSJed Brown 333420f4b53cSBarry Smith Calling sequence of `coarsenhook`: 3335bb7acecfSBarry Smith + fine - fine level `DM` 3336bb7acecfSBarry Smith . coarse - coarse level `DM` to restrict problem to 3337b17ce1afSJed Brown - ctx - optional user-defined function context 3338b17ce1afSJed Brown 333920f4b53cSBarry Smith Calling sequence of `restricthook`: 3340bb7acecfSBarry Smith + fine - fine level `DM` 3341bb7acecfSBarry Smith . mrestrict - matrix restricting a fine-level solution to the coarse grid, usually the transpose of the interpolation 3342c833c3b5SJed Brown . rscale - scaling vector for restriction 3343c833c3b5SJed Brown . inject - matrix restricting by injection 3344b17ce1afSJed Brown . coarse - coarse level DM to update 3345b17ce1afSJed Brown - ctx - optional user-defined function context 3346b17ce1afSJed Brown 3347b17ce1afSJed Brown Level: advanced 3348b17ce1afSJed Brown 3349b17ce1afSJed Brown Notes: 3350bb7acecfSBarry Smith This function is only needed if auxiliary data, attached to the `DM` with `PetscObjectCompose()`, needs to be set up or passed from the fine `DM` to the coarse `DM`. 3351b17ce1afSJed Brown 3352b17ce1afSJed Brown If this function is called multiple times, the hooks will be run in the order they are added. 3353b17ce1afSJed Brown 3354b17ce1afSJed Brown In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3355bb7acecfSBarry Smith extract the finest level information from its context (instead of from the `SNES`). 3356b17ce1afSJed Brown 3357bb7acecfSBarry Smith The hooks are automatically called by `DMRestrict()` 3358bb7acecfSBarry Smith 33591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3360b17ce1afSJed Brown @*/ 3361a4e35b19SJacob Faibussowitsch PetscErrorCode DMCoarsenHookAdd(DM fine, PetscErrorCode (*coarsenhook)(DM fine, DM coarse, void *ctx), PetscErrorCode (*restricthook)(DM fine, Mat mrestrict, Vec rscale, Mat inject, DM coarse, void *ctx), void *ctx) 3362d71ae5a4SJacob Faibussowitsch { 3363b17ce1afSJed Brown DMCoarsenHookLink link, *p; 3364b17ce1afSJed Brown 3365b17ce1afSJed Brown PetscFunctionBegin; 3366b17ce1afSJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 33671e3d8eccSJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 33683ba16761SJacob Faibussowitsch if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 33691e3d8eccSJed Brown } 33709566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 3371b17ce1afSJed Brown link->coarsenhook = coarsenhook; 3372b17ce1afSJed Brown link->restricthook = restricthook; 3373b17ce1afSJed Brown link->ctx = ctx; 33740298fd71SBarry Smith link->next = NULL; 3375b17ce1afSJed Brown *p = link; 33763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3377b17ce1afSJed Brown } 3378b17ce1afSJed Brown 3379dc822a44SJed Brown /*@C 3380bb7acecfSBarry Smith DMCoarsenHookRemove - remove a callback set with `DMCoarsenHookAdd()` 3381dc822a44SJed Brown 338220f4b53cSBarry Smith Logically Collective; No Fortran Support 3383dc822a44SJed Brown 33844165533cSJose E. Roman Input Parameters: 3385bb7acecfSBarry Smith + fine - `DM` on which to run a hook when restricting to a coarser level 3386dc822a44SJed Brown . coarsenhook - function to run when setting up a coarser level 3387bb7acecfSBarry Smith . restricthook - function to run to update data on coarser levels 338820f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3389dc822a44SJed Brown 3390dc822a44SJed Brown Level: advanced 3391dc822a44SJed Brown 3392*73ff1848SBarry Smith Notes: 3393*73ff1848SBarry Smith This function does nothing if the `coarsenhook` is not in the list. 3394*73ff1848SBarry Smith 3395*73ff1848SBarry Smith See `DMCoarsenHookAdd()` for the calling sequence of `coarsenhook` and `restricthook` 3396dc822a44SJed Brown 33971cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()` 3398dc822a44SJed Brown @*/ 3399d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHookRemove(DM fine, PetscErrorCode (*coarsenhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, Mat, Vec, Mat, DM, void *), void *ctx) 3400d71ae5a4SJacob Faibussowitsch { 3401dc822a44SJed Brown DMCoarsenHookLink link, *p; 3402dc822a44SJed Brown 3403dc822a44SJed Brown PetscFunctionBegin; 3404dc822a44SJed Brown PetscValidHeaderSpecific(fine, DM_CLASSID, 1); 3405dc822a44SJed Brown for (p = &fine->coarsenhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3406dc822a44SJed Brown if ((*p)->coarsenhook == coarsenhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3407dc822a44SJed Brown link = *p; 3408dc822a44SJed Brown *p = link->next; 34099566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3410dc822a44SJed Brown break; 3411dc822a44SJed Brown } 3412dc822a44SJed Brown } 34133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3414dc822a44SJed Brown } 3415dc822a44SJed Brown 3416b17ce1afSJed Brown /*@ 3417bb7acecfSBarry Smith DMRestrict - restricts user-defined problem data to a coarser `DM` by running hooks registered by `DMCoarsenHookAdd()` 3418b17ce1afSJed Brown 3419b17ce1afSJed Brown Collective if any hooks are 3420b17ce1afSJed Brown 34214165533cSJose E. Roman Input Parameters: 3422bb7acecfSBarry Smith + fine - finer `DM` from which the data is obtained 3423bb7acecfSBarry Smith . restrct - restriction matrix, apply using `MatRestrict()`, usually the transpose of the interpolation 3424e91eccc2SStefano Zampini . rscale - scaling vector for restriction 3425bb7acecfSBarry Smith . inject - injection matrix, also use `MatRestrict()` 342620f4b53cSBarry Smith - coarse - coarser `DM` to update 3427b17ce1afSJed Brown 3428b17ce1afSJed Brown Level: developer 3429b17ce1afSJed Brown 3430*73ff1848SBarry Smith Developer Note: 3431bb7acecfSBarry Smith Though this routine is called `DMRestrict()` the hooks are added with `DMCoarsenHookAdd()`, a consistent terminology would be better 3432bb7acecfSBarry Smith 34331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMInterpolate()`, `DMRefineHookAdd()` 3434b17ce1afSJed Brown @*/ 3435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRestrict(DM fine, Mat restrct, Vec rscale, Mat inject, DM coarse) 3436d71ae5a4SJacob Faibussowitsch { 3437b17ce1afSJed Brown DMCoarsenHookLink link; 3438b17ce1afSJed Brown 3439b17ce1afSJed Brown PetscFunctionBegin; 3440b17ce1afSJed Brown for (link = fine->coarsenhook; link; link = link->next) { 34411baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(fine, restrct, rscale, inject, coarse, link->ctx)); 3442b17ce1afSJed Brown } 34433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 344447c6ae99SBarry Smith } 344547c6ae99SBarry Smith 3446bb9467b5SJed Brown /*@C 3447*73ff1848SBarry Smith DMSubDomainHookAdd - adds a callback to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 34485dbd56e3SPeter Brune 344920f4b53cSBarry Smith Logically Collective; No Fortran Support 34505dbd56e3SPeter Brune 34514165533cSJose E. Roman Input Parameters: 3452bb7acecfSBarry Smith + global - global `DM` 3453bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 34545dbd56e3SPeter Brune . restricthook - function to run to update data on block solve (at the beginning of the block solve) 345520f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 34565dbd56e3SPeter Brune 345720f4b53cSBarry Smith Calling sequence of `ddhook`: 3458bb7acecfSBarry Smith + global - global `DM` 3459*73ff1848SBarry Smith . block - subdomain `DM` 3460ec4806b8SPeter Brune - ctx - optional user-defined function context 3461ec4806b8SPeter Brune 346220f4b53cSBarry Smith Calling sequence of `restricthook`: 3463bb7acecfSBarry Smith + global - global `DM` 3464*73ff1848SBarry Smith . out - scatter to the outer (with ghost and overlap points) sub vector 3465*73ff1848SBarry Smith . in - scatter to sub vector values only owned locally 3466*73ff1848SBarry Smith . block - subdomain `DM` 34675dbd56e3SPeter Brune - ctx - optional user-defined function context 34685dbd56e3SPeter Brune 34695dbd56e3SPeter Brune Level: advanced 34705dbd56e3SPeter Brune 34715dbd56e3SPeter Brune Notes: 3472*73ff1848SBarry Smith This function can be used if auxiliary data needs to be set up on subdomain `DM`s. 34735dbd56e3SPeter Brune 34745dbd56e3SPeter Brune If this function is called multiple times, the hooks will be run in the order they are added. 34755dbd56e3SPeter Brune 34765dbd56e3SPeter Brune In order to compose with nonlinear preconditioning without duplicating storage, the hook should be implemented to 3477bb7acecfSBarry Smith extract the global information from its context (instead of from the `SNES`). 34785dbd56e3SPeter Brune 3479*73ff1848SBarry Smith Developer Note: 3480*73ff1848SBarry Smith It is unclear what "block solve" means within the definition of `restricthook` 3481*73ff1848SBarry Smith 3482*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookRemove()`, `DMRefineHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, `DMCreateDomainDecomposition()` 34835dbd56e3SPeter Brune @*/ 3484a4e35b19SJacob Faibussowitsch PetscErrorCode DMSubDomainHookAdd(DM global, PetscErrorCode (*ddhook)(DM global, DM block, void *ctx), PetscErrorCode (*restricthook)(DM global, VecScatter out, VecScatter in, DM block, void *ctx), void *ctx) 3485d71ae5a4SJacob Faibussowitsch { 3486be081cd6SPeter Brune DMSubDomainHookLink link, *p; 34875dbd56e3SPeter Brune 34885dbd56e3SPeter Brune PetscFunctionBegin; 34895dbd56e3SPeter Brune PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3490b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Scan to the end of the current list of hooks */ 34913ba16761SJacob Faibussowitsch if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) PetscFunctionReturn(PETSC_SUCCESS); 3492b3a6b972SJed Brown } 34939566063dSJacob Faibussowitsch PetscCall(PetscNew(&link)); 34945dbd56e3SPeter Brune link->restricthook = restricthook; 3495be081cd6SPeter Brune link->ddhook = ddhook; 34965dbd56e3SPeter Brune link->ctx = ctx; 34970298fd71SBarry Smith link->next = NULL; 34985dbd56e3SPeter Brune *p = link; 34993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35005dbd56e3SPeter Brune } 35015dbd56e3SPeter Brune 3502b3a6b972SJed Brown /*@C 3503*73ff1848SBarry Smith DMSubDomainHookRemove - remove a callback from the list to be run when restricting a problem to subdomain `DM`s with `DMCreateDomainDecomposition()` 3504b3a6b972SJed Brown 350520f4b53cSBarry Smith Logically Collective; No Fortran Support 3506b3a6b972SJed Brown 35074165533cSJose E. Roman Input Parameters: 3508bb7acecfSBarry Smith + global - global `DM` 3509bb7acecfSBarry Smith . ddhook - function to run to pass data to the decomposition `DM` upon its creation 3510b3a6b972SJed Brown . restricthook - function to run to update data on block solve (at the beginning of the block solve) 351120f4b53cSBarry Smith - ctx - [optional] user-defined context for provide data for the hooks (may be `NULL`) 3512b3a6b972SJed Brown 3513b3a6b972SJed Brown Level: advanced 3514b3a6b972SJed Brown 3515*73ff1848SBarry Smith Note: 3516*73ff1848SBarry Smith See `DMSubDomainHookAdd()` for the calling sequences of `ddhook` and `restricthook` 3517*73ff1848SBarry Smith 3518*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSubDomainHookAdd()`, `SNESFASGetInterpolation()`, `SNESFASGetInjection()`, `PetscObjectCompose()`, `PetscContainerCreate()`, 3519*73ff1848SBarry Smith `DMCreateDomainDecomposition()` 3520b3a6b972SJed Brown @*/ 3521d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainHookRemove(DM global, PetscErrorCode (*ddhook)(DM, DM, void *), PetscErrorCode (*restricthook)(DM, VecScatter, VecScatter, DM, void *), void *ctx) 3522d71ae5a4SJacob Faibussowitsch { 3523b3a6b972SJed Brown DMSubDomainHookLink link, *p; 3524b3a6b972SJed Brown 3525b3a6b972SJed Brown PetscFunctionBegin; 3526b3a6b972SJed Brown PetscValidHeaderSpecific(global, DM_CLASSID, 1); 3527b3a6b972SJed Brown for (p = &global->subdomainhook; *p; p = &(*p)->next) { /* Search the list of current hooks */ 3528b3a6b972SJed Brown if ((*p)->ddhook == ddhook && (*p)->restricthook == restricthook && (*p)->ctx == ctx) { 3529b3a6b972SJed Brown link = *p; 3530b3a6b972SJed Brown *p = link->next; 35319566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 3532b3a6b972SJed Brown break; 3533b3a6b972SJed Brown } 3534b3a6b972SJed Brown } 35353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3536b3a6b972SJed Brown } 3537b3a6b972SJed Brown 35385dbd56e3SPeter Brune /*@ 3539*73ff1848SBarry Smith DMSubDomainRestrict - restricts user-defined problem data to a subdomain `DM` by running hooks registered by `DMSubDomainHookAdd()` 35405dbd56e3SPeter Brune 35415dbd56e3SPeter Brune Collective if any hooks are 35425dbd56e3SPeter Brune 35434165533cSJose E. Roman Input Parameters: 3544a4e35b19SJacob Faibussowitsch + global - The global `DM` to use as a base 3545a4e35b19SJacob Faibussowitsch . oscatter - The scatter from domain global vector filling subdomain global vector with overlap 3546a4e35b19SJacob Faibussowitsch . gscatter - The scatter from domain global vector filling subdomain local vector with ghosts 3547a4e35b19SJacob Faibussowitsch - subdm - The subdomain `DM` to update 35485dbd56e3SPeter Brune 35495dbd56e3SPeter Brune Level: developer 35505dbd56e3SPeter Brune 3551*73ff1848SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsenHookAdd()`, `MatRestrict()`, `DMCreateDomainDecomposition()` 35525dbd56e3SPeter Brune @*/ 3553d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSubDomainRestrict(DM global, VecScatter oscatter, VecScatter gscatter, DM subdm) 3554d71ae5a4SJacob Faibussowitsch { 3555be081cd6SPeter Brune DMSubDomainHookLink link; 35565dbd56e3SPeter Brune 35575dbd56e3SPeter Brune PetscFunctionBegin; 3558be081cd6SPeter Brune for (link = global->subdomainhook; link; link = link->next) { 35591baa6e33SBarry Smith if (link->restricthook) PetscCall((*link->restricthook)(global, oscatter, gscatter, subdm, link->ctx)); 35605dbd56e3SPeter Brune } 35613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35625dbd56e3SPeter Brune } 35635dbd56e3SPeter Brune 35645fe1f584SPeter Brune /*@ 3565bb7acecfSBarry Smith DMGetCoarsenLevel - Gets the number of coarsenings that have generated this `DM`. 35665fe1f584SPeter Brune 35675fe1f584SPeter Brune Not Collective 35685fe1f584SPeter Brune 35695fe1f584SPeter Brune Input Parameter: 3570bb7acecfSBarry Smith . dm - the `DM` object 35715fe1f584SPeter Brune 35725fe1f584SPeter Brune Output Parameter: 35736a7d9d85SPeter Brune . level - number of coarsenings 35745fe1f584SPeter Brune 35755fe1f584SPeter Brune Level: developer 35765fe1f584SPeter Brune 35771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMSetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 35785fe1f584SPeter Brune @*/ 3579d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarsenLevel(DM dm, PetscInt *level) 3580d71ae5a4SJacob Faibussowitsch { 35815fe1f584SPeter Brune PetscFunctionBegin; 35825fe1f584SPeter Brune PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 35834f572ea9SToby Isaac PetscAssertPointer(level, 2); 35845fe1f584SPeter Brune *level = dm->leveldown; 35853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 35865fe1f584SPeter Brune } 35875fe1f584SPeter Brune 35889a64c4a8SMatthew G. Knepley /*@ 3589bb7acecfSBarry Smith DMSetCoarsenLevel - Sets the number of coarsenings that have generated this `DM`. 35909a64c4a8SMatthew G. Knepley 359120f4b53cSBarry Smith Collective 35929a64c4a8SMatthew G. Knepley 35939a64c4a8SMatthew G. Knepley Input Parameters: 3594bb7acecfSBarry Smith + dm - the `DM` object 35959a64c4a8SMatthew G. Knepley - level - number of coarsenings 35969a64c4a8SMatthew G. Knepley 35979a64c4a8SMatthew G. Knepley Level: developer 35989a64c4a8SMatthew G. Knepley 3599bb7acecfSBarry Smith Note: 3600bb7acecfSBarry Smith This is rarely used directly, the information is automatically set when a `DM` is created with `DMCoarsen()` 3601bb7acecfSBarry Smith 360242747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMGetCoarsenLevel()`, `DMGetRefineLevel()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 36039a64c4a8SMatthew G. Knepley @*/ 3604d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarsenLevel(DM dm, PetscInt level) 3605d71ae5a4SJacob Faibussowitsch { 36069a64c4a8SMatthew G. Knepley PetscFunctionBegin; 36079a64c4a8SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36089a64c4a8SMatthew G. Knepley dm->leveldown = level; 36093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36109a64c4a8SMatthew G. Knepley } 36119a64c4a8SMatthew G. Knepley 361247c6ae99SBarry Smith /*@C 3613bb7acecfSBarry Smith DMRefineHierarchy - Refines a `DM` object, all levels at once 361447c6ae99SBarry Smith 361520f4b53cSBarry Smith Collective 361647c6ae99SBarry Smith 3617d8d19677SJose E. Roman Input Parameters: 3618bb7acecfSBarry Smith + dm - the `DM` object 361947c6ae99SBarry Smith - nlevels - the number of levels of refinement 362047c6ae99SBarry Smith 362147c6ae99SBarry Smith Output Parameter: 3622bb7acecfSBarry Smith . dmf - the refined `DM` hierarchy 362347c6ae99SBarry Smith 362447c6ae99SBarry Smith Level: developer 362547c6ae99SBarry Smith 36261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMCoarsenHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 362747c6ae99SBarry Smith @*/ 3628d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRefineHierarchy(DM dm, PetscInt nlevels, DM dmf[]) 3629d71ae5a4SJacob Faibussowitsch { 363047c6ae99SBarry Smith PetscFunctionBegin; 3631171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36327a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36333ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36344f572ea9SToby Isaac PetscAssertPointer(dmf, 3); 3635213acdd3SPierre Jolivet if (dm->ops->refine && !dm->ops->refinehierarchy) { 363647c6ae99SBarry Smith PetscInt i; 363747c6ae99SBarry Smith 36389566063dSJacob Faibussowitsch PetscCall(DMRefine(dm, PetscObjectComm((PetscObject)dm), &dmf[0])); 363948a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMRefine(dmf[i - 1], PetscObjectComm((PetscObject)dm), &dmf[i])); 3640213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, refinehierarchy, nlevels, dmf); 36413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 364247c6ae99SBarry Smith } 364347c6ae99SBarry Smith 364447c6ae99SBarry Smith /*@C 3645bb7acecfSBarry Smith DMCoarsenHierarchy - Coarsens a `DM` object, all levels at once 364647c6ae99SBarry Smith 364720f4b53cSBarry Smith Collective 364847c6ae99SBarry Smith 3649d8d19677SJose E. Roman Input Parameters: 3650bb7acecfSBarry Smith + dm - the `DM` object 365147c6ae99SBarry Smith - nlevels - the number of levels of coarsening 365247c6ae99SBarry Smith 365347c6ae99SBarry Smith Output Parameter: 3654bb7acecfSBarry Smith . dmc - the coarsened `DM` hierarchy 365547c6ae99SBarry Smith 365647c6ae99SBarry Smith Level: developer 365747c6ae99SBarry Smith 36581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCoarsen()`, `DMRefineHierarchy()`, `DMDestroy()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()` 365947c6ae99SBarry Smith @*/ 3660d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCoarsenHierarchy(DM dm, PetscInt nlevels, DM dmc[]) 3661d71ae5a4SJacob Faibussowitsch { 366247c6ae99SBarry Smith PetscFunctionBegin; 3663171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36647a8be351SBarry Smith PetscCheck(nlevels >= 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "nlevels cannot be negative"); 36653ba16761SJacob Faibussowitsch if (nlevels == 0) PetscFunctionReturn(PETSC_SUCCESS); 36664f572ea9SToby Isaac PetscAssertPointer(dmc, 3); 3667213acdd3SPierre Jolivet if (dm->ops->coarsen && !dm->ops->coarsenhierarchy) { 366847c6ae99SBarry Smith PetscInt i; 366947c6ae99SBarry Smith 36709566063dSJacob Faibussowitsch PetscCall(DMCoarsen(dm, PetscObjectComm((PetscObject)dm), &dmc[0])); 367148a46eb9SPierre Jolivet for (i = 1; i < nlevels; i++) PetscCall(DMCoarsen(dmc[i - 1], PetscObjectComm((PetscObject)dm), &dmc[i])); 3672213acdd3SPierre Jolivet } else PetscUseTypeMethod(dm, coarsenhierarchy, nlevels, dmc); 36733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 367447c6ae99SBarry Smith } 367547c6ae99SBarry Smith 36761a266240SBarry Smith /*@C 3677bb7acecfSBarry Smith DMSetApplicationContextDestroy - Sets a user function that will be called to destroy the application context when the `DM` is destroyed 36781a266240SBarry Smith 3679bb7acecfSBarry Smith Logically Collective if the function is collective 36801a266240SBarry Smith 36811a266240SBarry Smith Input Parameters: 3682bb7acecfSBarry Smith + dm - the `DM` object 36831a266240SBarry Smith - destroy - the destroy function 36841a266240SBarry Smith 36851a266240SBarry Smith Level: intermediate 36861a266240SBarry Smith 36871cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 3688f07f9ceaSJed Brown @*/ 3689d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContextDestroy(DM dm, PetscErrorCode (*destroy)(void **)) 3690d71ae5a4SJacob Faibussowitsch { 36911a266240SBarry Smith PetscFunctionBegin; 3692171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 36931a266240SBarry Smith dm->ctxdestroy = destroy; 36943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 36951a266240SBarry Smith } 36961a266240SBarry Smith 3697b07ff414SBarry Smith /*@ 3698bb7acecfSBarry Smith DMSetApplicationContext - Set a user context into a `DM` object 369947c6ae99SBarry Smith 370047c6ae99SBarry Smith Not Collective 370147c6ae99SBarry Smith 370247c6ae99SBarry Smith Input Parameters: 3703bb7acecfSBarry Smith + dm - the `DM` object 370447c6ae99SBarry Smith - ctx - the user context 370547c6ae99SBarry Smith 370647c6ae99SBarry Smith Level: intermediate 370747c6ae99SBarry Smith 3708bb7acecfSBarry Smith Note: 370935cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3710bb7acecfSBarry Smith 371160225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMGetApplicationContext()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 371247c6ae99SBarry Smith @*/ 3713d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetApplicationContext(DM dm, void *ctx) 3714d71ae5a4SJacob Faibussowitsch { 371547c6ae99SBarry Smith PetscFunctionBegin; 3716171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 371747c6ae99SBarry Smith dm->ctx = ctx; 37183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 371947c6ae99SBarry Smith } 372047c6ae99SBarry Smith 372147c6ae99SBarry Smith /*@ 3722bb7acecfSBarry Smith DMGetApplicationContext - Gets a user context from a `DM` object 372347c6ae99SBarry Smith 372447c6ae99SBarry Smith Not Collective 372547c6ae99SBarry Smith 372647c6ae99SBarry Smith Input Parameter: 3727bb7acecfSBarry Smith . dm - the `DM` object 372847c6ae99SBarry Smith 372947c6ae99SBarry Smith Output Parameter: 373047c6ae99SBarry Smith . ctx - the user context 373147c6ae99SBarry Smith 373247c6ae99SBarry Smith Level: intermediate 373347c6ae99SBarry Smith 3734bb7acecfSBarry Smith Note: 373535cb6cd3SPierre Jolivet A user context is a way to pass problem specific information that is accessible whenever the `DM` is available 3736bb7acecfSBarry Smith 373742747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()` 373847c6ae99SBarry Smith @*/ 3739d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetApplicationContext(DM dm, void *ctx) 3740d71ae5a4SJacob Faibussowitsch { 374147c6ae99SBarry Smith PetscFunctionBegin; 3742171400e9SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37431b2093e4SBarry Smith *(void **)ctx = dm->ctx; 37443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 374547c6ae99SBarry Smith } 374647c6ae99SBarry Smith 374708da532bSDmitry Karpeev /*@C 3748bb7acecfSBarry Smith DMSetVariableBounds - sets a function to compute the lower and upper bound vectors for `SNESVI`. 374908da532bSDmitry Karpeev 375020f4b53cSBarry Smith Logically Collective 375108da532bSDmitry Karpeev 3752d8d19677SJose E. Roman Input Parameters: 375308da532bSDmitry Karpeev + dm - the DM object 375420f4b53cSBarry Smith - f - the function that computes variable bounds used by SNESVI (use `NULL` to cancel a previous function that was set) 375508da532bSDmitry Karpeev 375608da532bSDmitry Karpeev Level: intermediate 375708da532bSDmitry Karpeev 37581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()`, 3759db781477SPatrick Sanan `DMSetJacobian()` 376008da532bSDmitry Karpeev @*/ 3761d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetVariableBounds(DM dm, PetscErrorCode (*f)(DM, Vec, Vec)) 3762d71ae5a4SJacob Faibussowitsch { 376308da532bSDmitry Karpeev PetscFunctionBegin; 37645a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 376508da532bSDmitry Karpeev dm->ops->computevariablebounds = f; 37663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376708da532bSDmitry Karpeev } 376808da532bSDmitry Karpeev 376908da532bSDmitry Karpeev /*@ 3770bb7acecfSBarry Smith DMHasVariableBounds - does the `DM` object have a variable bounds function? 377108da532bSDmitry Karpeev 377208da532bSDmitry Karpeev Not Collective 377308da532bSDmitry Karpeev 377408da532bSDmitry Karpeev Input Parameter: 3775bb7acecfSBarry Smith . dm - the `DM` object to destroy 377608da532bSDmitry Karpeev 377708da532bSDmitry Karpeev Output Parameter: 3778bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the variable bounds function exists 377908da532bSDmitry Karpeev 378008da532bSDmitry Karpeev Level: developer 378108da532bSDmitry Karpeev 37821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMComputeVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 378308da532bSDmitry Karpeev @*/ 3784d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasVariableBounds(DM dm, PetscBool *flg) 3785d71ae5a4SJacob Faibussowitsch { 378608da532bSDmitry Karpeev PetscFunctionBegin; 37875a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 37884f572ea9SToby Isaac PetscAssertPointer(flg, 2); 378908da532bSDmitry Karpeev *flg = (dm->ops->computevariablebounds) ? PETSC_TRUE : PETSC_FALSE; 37903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379108da532bSDmitry Karpeev } 379208da532bSDmitry Karpeev 379308da532bSDmitry Karpeev /*@C 3794bb7acecfSBarry Smith DMComputeVariableBounds - compute variable bounds used by `SNESVI`. 379508da532bSDmitry Karpeev 379620f4b53cSBarry Smith Logically Collective 379708da532bSDmitry Karpeev 3798f899ff85SJose E. Roman Input Parameter: 3799bb7acecfSBarry Smith . dm - the `DM` object 380008da532bSDmitry Karpeev 380160225df5SJacob Faibussowitsch Output Parameters: 380208da532bSDmitry Karpeev + xl - lower bound 380308da532bSDmitry Karpeev - xu - upper bound 380408da532bSDmitry Karpeev 3805907376e6SBarry Smith Level: advanced 3806907376e6SBarry Smith 380720f4b53cSBarry Smith Note: 380895452b02SPatrick Sanan This is generally not called by users. It calls the function provided by the user with DMSetVariableBounds() 380908da532bSDmitry Karpeev 38101cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMHasVariableBounds()`, `DMView()`, `DMCreateGlobalVector()`, `DMCreateInterpolation()`, `DMCreateColoring()`, `DMCreateMatrix()`, `DMCreateMassMatrix()`, `DMGetApplicationContext()` 381108da532bSDmitry Karpeev @*/ 3812d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeVariableBounds(DM dm, Vec xl, Vec xu) 3813d71ae5a4SJacob Faibussowitsch { 381408da532bSDmitry Karpeev PetscFunctionBegin; 38155a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 381608da532bSDmitry Karpeev PetscValidHeaderSpecific(xl, VEC_CLASSID, 2); 38175a84ad33SLisandro Dalcin PetscValidHeaderSpecific(xu, VEC_CLASSID, 3); 3818dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, computevariablebounds, xl, xu); 38193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 382008da532bSDmitry Karpeev } 382108da532bSDmitry Karpeev 3822b0ae01b7SPeter Brune /*@ 3823bb7acecfSBarry Smith DMHasColoring - does the `DM` object have a method of providing a coloring? 3824b0ae01b7SPeter Brune 3825b0ae01b7SPeter Brune Not Collective 3826b0ae01b7SPeter Brune 3827b0ae01b7SPeter Brune Input Parameter: 3828b0ae01b7SPeter Brune . dm - the DM object 3829b0ae01b7SPeter Brune 3830b0ae01b7SPeter Brune Output Parameter: 3831bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateColoring()`. 3832b0ae01b7SPeter Brune 3833b0ae01b7SPeter Brune Level: developer 3834b0ae01b7SPeter Brune 38351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateColoring()` 3836b0ae01b7SPeter Brune @*/ 3837d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasColoring(DM dm, PetscBool *flg) 3838d71ae5a4SJacob Faibussowitsch { 3839b0ae01b7SPeter Brune PetscFunctionBegin; 38405a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38414f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3842b0ae01b7SPeter Brune *flg = (dm->ops->getcoloring) ? PETSC_TRUE : PETSC_FALSE; 38433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3844b0ae01b7SPeter Brune } 3845b0ae01b7SPeter Brune 38463ad4599aSBarry Smith /*@ 3847bb7acecfSBarry Smith DMHasCreateRestriction - does the `DM` object have a method of providing a restriction? 38483ad4599aSBarry Smith 38493ad4599aSBarry Smith Not Collective 38503ad4599aSBarry Smith 38513ad4599aSBarry Smith Input Parameter: 3852bb7acecfSBarry Smith . dm - the `DM` object 38533ad4599aSBarry Smith 38543ad4599aSBarry Smith Output Parameter: 3855bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateRestriction()`. 38563ad4599aSBarry Smith 38573ad4599aSBarry Smith Level: developer 38583ad4599aSBarry Smith 38591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateRestriction()`, `DMHasCreateInterpolation()`, `DMHasCreateInjection()` 38603ad4599aSBarry Smith @*/ 3861d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateRestriction(DM dm, PetscBool *flg) 3862d71ae5a4SJacob Faibussowitsch { 38633ad4599aSBarry Smith PetscFunctionBegin; 38645a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38654f572ea9SToby Isaac PetscAssertPointer(flg, 2); 38663ad4599aSBarry Smith *flg = (dm->ops->createrestriction) ? PETSC_TRUE : PETSC_FALSE; 38673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 38683ad4599aSBarry Smith } 38693ad4599aSBarry Smith 3870a7058e45SLawrence Mitchell /*@ 3871bb7acecfSBarry Smith DMHasCreateInjection - does the `DM` object have a method of providing an injection? 3872a7058e45SLawrence Mitchell 3873a7058e45SLawrence Mitchell Not Collective 3874a7058e45SLawrence Mitchell 3875a7058e45SLawrence Mitchell Input Parameter: 3876bb7acecfSBarry Smith . dm - the `DM` object 3877a7058e45SLawrence Mitchell 3878a7058e45SLawrence Mitchell Output Parameter: 3879bb7acecfSBarry Smith . flg - `PETSC_TRUE` if the `DM` has facilities for `DMCreateInjection()`. 3880a7058e45SLawrence Mitchell 3881a7058e45SLawrence Mitchell Level: developer 3882a7058e45SLawrence Mitchell 38831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateInjection()`, `DMHasCreateRestriction()`, `DMHasCreateInterpolation()` 3884a7058e45SLawrence Mitchell @*/ 3885d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasCreateInjection(DM dm, PetscBool *flg) 3886d71ae5a4SJacob Faibussowitsch { 3887a7058e45SLawrence Mitchell PetscFunctionBegin; 38885a84ad33SLisandro Dalcin PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 38894f572ea9SToby Isaac PetscAssertPointer(flg, 2); 3890dbbe0bcdSBarry Smith if (dm->ops->hascreateinjection) PetscUseTypeMethod(dm, hascreateinjection, flg); 3891ad540459SPierre Jolivet else *flg = (dm->ops->createinjection) ? PETSC_TRUE : PETSC_FALSE; 38923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3893a7058e45SLawrence Mitchell } 3894a7058e45SLawrence Mitchell 38950298fd71SBarry Smith PetscFunctionList DMList = NULL; 3896264ace61SBarry Smith PetscBool DMRegisterAllCalled = PETSC_FALSE; 3897264ace61SBarry Smith 3898264ace61SBarry Smith /*@C 3899bb7acecfSBarry Smith DMSetType - Builds a `DM`, for a particular `DM` implementation. 3900264ace61SBarry Smith 390120f4b53cSBarry Smith Collective 3902264ace61SBarry Smith 3903264ace61SBarry Smith Input Parameters: 3904bb7acecfSBarry Smith + dm - The `DM` object 3905bb7acecfSBarry Smith - method - The name of the `DMType`, for example `DMDA`, `DMPLEX` 3906264ace61SBarry Smith 3907264ace61SBarry Smith Options Database Key: 3908bb7acecfSBarry Smith . -dm_type <type> - Sets the `DM` type; use -help for a list of available types 3909264ace61SBarry Smith 3910264ace61SBarry Smith Level: intermediate 3911264ace61SBarry Smith 3912bb7acecfSBarry Smith Note: 39130462cc06SPierre Jolivet Of the `DM` is constructed by directly calling a function to construct a particular `DM`, for example, `DMDACreate2d()` or `DMPlexCreateBoxMesh()` 3914bb7acecfSBarry Smith 39151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMGetType()`, `DMCreate()`, `DMDACreate2d()` 3916264ace61SBarry Smith @*/ 3917d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetType(DM dm, DMType method) 3918d71ae5a4SJacob Faibussowitsch { 3919264ace61SBarry Smith PetscErrorCode (*r)(DM); 3920264ace61SBarry Smith PetscBool match; 3921264ace61SBarry Smith 3922264ace61SBarry Smith PetscFunctionBegin; 3923264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, method, &match)); 39253ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 3926264ace61SBarry Smith 39279566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 39289566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(DMList, method, &r)); 39297a8be351SBarry Smith PetscCheck(r, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown DM type: %s", method); 3930264ace61SBarry Smith 3931dbbe0bcdSBarry Smith PetscTryTypeMethod(dm, destroy); 39329566063dSJacob Faibussowitsch PetscCall(PetscMemzero(dm->ops, sizeof(*dm->ops))); 39339566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)dm, method)); 39349566063dSJacob Faibussowitsch PetscCall((*r)(dm)); 39353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3936264ace61SBarry Smith } 3937264ace61SBarry Smith 3938264ace61SBarry Smith /*@C 3939bb7acecfSBarry Smith DMGetType - Gets the `DM` type name (as a string) from the `DM`. 3940264ace61SBarry Smith 3941264ace61SBarry Smith Not Collective 3942264ace61SBarry Smith 3943264ace61SBarry Smith Input Parameter: 3944bb7acecfSBarry Smith . dm - The `DM` 3945264ace61SBarry Smith 3946264ace61SBarry Smith Output Parameter: 3947bb7acecfSBarry Smith . type - The `DMType` name 3948264ace61SBarry Smith 3949264ace61SBarry Smith Level: intermediate 3950264ace61SBarry Smith 39511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMDA`, `DMPLEX`, `DMSetType()`, `DMCreate()` 3952264ace61SBarry Smith @*/ 3953d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetType(DM dm, DMType *type) 3954d71ae5a4SJacob Faibussowitsch { 3955264ace61SBarry Smith PetscFunctionBegin; 3956264ace61SBarry Smith PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 39574f572ea9SToby Isaac PetscAssertPointer(type, 2); 39589566063dSJacob Faibussowitsch PetscCall(DMRegisterAll()); 3959264ace61SBarry Smith *type = ((PetscObject)dm)->type_name; 39603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3961264ace61SBarry Smith } 3962264ace61SBarry Smith 396367a56275SMatthew G Knepley /*@C 3964bb7acecfSBarry Smith DMConvert - Converts a `DM` to another `DM`, either of the same or different type. 396567a56275SMatthew G Knepley 396620f4b53cSBarry Smith Collective 396767a56275SMatthew G Knepley 396867a56275SMatthew G Knepley Input Parameters: 3969bb7acecfSBarry Smith + dm - the `DM` 3970bb7acecfSBarry Smith - newtype - new `DM` type (use "same" for the same type) 397167a56275SMatthew G Knepley 397267a56275SMatthew G Knepley Output Parameter: 3973bb7acecfSBarry Smith . M - pointer to new `DM` 397467a56275SMatthew G Knepley 397520f4b53cSBarry Smith Level: intermediate 397620f4b53cSBarry Smith 3977*73ff1848SBarry Smith Note: 3978bb7acecfSBarry Smith Cannot be used to convert a sequential `DM` to a parallel or a parallel to sequential, 3979bb7acecfSBarry Smith the MPI communicator of the generated `DM` is always the same as the communicator 3980bb7acecfSBarry Smith of the input `DM`. 398167a56275SMatthew G Knepley 39821cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetType()`, `DMCreate()`, `DMClone()` 398367a56275SMatthew G Knepley @*/ 3984d71ae5a4SJacob Faibussowitsch PetscErrorCode DMConvert(DM dm, DMType newtype, DM *M) 3985d71ae5a4SJacob Faibussowitsch { 398667a56275SMatthew G Knepley DM B; 398767a56275SMatthew G Knepley char convname[256]; 3988c067b6caSMatthew G. Knepley PetscBool sametype /*, issame */; 398967a56275SMatthew G Knepley 399067a56275SMatthew G Knepley PetscFunctionBegin; 399167a56275SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 399267a56275SMatthew G Knepley PetscValidType(dm, 1); 39934f572ea9SToby Isaac PetscAssertPointer(M, 3); 39949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)dm, newtype, &sametype)); 39959566063dSJacob Faibussowitsch /* PetscCall(PetscStrcmp(newtype, "same", &issame)); */ 3996c067b6caSMatthew G. Knepley if (sametype) { 3997c067b6caSMatthew G. Knepley *M = dm; 39989566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)dm)); 39993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4000c067b6caSMatthew G. Knepley } else { 40010298fd71SBarry Smith PetscErrorCode (*conv)(DM, DMType, DM *) = NULL; 400267a56275SMatthew G Knepley 400367a56275SMatthew G Knepley /* 400467a56275SMatthew G Knepley Order of precedence: 400567a56275SMatthew G Knepley 1) See if a specialized converter is known to the current DM. 400667a56275SMatthew G Knepley 2) See if a specialized converter is known to the desired DM class. 400767a56275SMatthew G Knepley 3) See if a good general converter is registered for the desired class 400867a56275SMatthew G Knepley 4) See if a good general converter is known for the current matrix. 400967a56275SMatthew G Knepley 5) Use a really basic converter. 401067a56275SMatthew G Knepley */ 401167a56275SMatthew G Knepley 401267a56275SMatthew G Knepley /* 1) See if a specialized converter is known to the current DM and the desired class */ 40139566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40149566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40159566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40169566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40179566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40189566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)dm, convname, &conv)); 401967a56275SMatthew G Knepley if (conv) goto foundconv; 402067a56275SMatthew G Knepley 402167a56275SMatthew G Knepley /* 2) See if a specialized converter is known to the desired DM class. */ 40229566063dSJacob Faibussowitsch PetscCall(DMCreate(PetscObjectComm((PetscObject)dm), &B)); 40239566063dSJacob Faibussowitsch PetscCall(DMSetType(B, newtype)); 40249566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(convname, "DMConvert_", sizeof(convname))); 40259566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, ((PetscObject)dm)->type_name, sizeof(convname))); 40269566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_", sizeof(convname))); 40279566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, newtype, sizeof(convname))); 40289566063dSJacob Faibussowitsch PetscCall(PetscStrlcat(convname, "_C", sizeof(convname))); 40299566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)B, convname, &conv)); 403067a56275SMatthew G Knepley if (conv) { 40319566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 403267a56275SMatthew G Knepley goto foundconv; 403367a56275SMatthew G Knepley } 403467a56275SMatthew G Knepley 403567a56275SMatthew G Knepley #if 0 403667a56275SMatthew G Knepley /* 3) See if a good general converter is registered for the desired class */ 403767a56275SMatthew G Knepley conv = B->ops->convertfrom; 40389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&B)); 403967a56275SMatthew G Knepley if (conv) goto foundconv; 404067a56275SMatthew G Knepley 404167a56275SMatthew G Knepley /* 4) See if a good general converter is known for the current matrix */ 404267a56275SMatthew G Knepley if (dm->ops->convert) { 404367a56275SMatthew G Knepley conv = dm->ops->convert; 404467a56275SMatthew G Knepley } 404567a56275SMatthew G Knepley if (conv) goto foundconv; 404667a56275SMatthew G Knepley #endif 404767a56275SMatthew G Knepley 404867a56275SMatthew G Knepley /* 5) Use a really basic converter. */ 404998921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_SUP, "No conversion possible between DM types %s and %s", ((PetscObject)dm)->type_name, newtype); 405067a56275SMatthew G Knepley 405167a56275SMatthew G Knepley foundconv: 40529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Convert, dm, 0, 0, 0)); 40539566063dSJacob Faibussowitsch PetscCall((*conv)(dm, newtype, M)); 405412fa691eSMatthew G. Knepley /* Things that are independent of DM type: We should consult DMClone() here */ 405590b157c4SStefano Zampini { 40564fb89dddSMatthew G. Knepley const PetscReal *maxCell, *Lstart, *L; 40576858538eSMatthew G. Knepley 40584fb89dddSMatthew G. Knepley PetscCall(DMGetPeriodicity(dm, &maxCell, &Lstart, &L)); 40594fb89dddSMatthew G. Knepley PetscCall(DMSetPeriodicity(*M, maxCell, Lstart, L)); 4060c8a6034eSMark (*M)->prealloc_only = dm->prealloc_only; 40619566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->vectype)); 40629566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->vectype, (char **)&(*M)->vectype)); 40639566063dSJacob Faibussowitsch PetscCall(PetscFree((*M)->mattype)); 40649566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(dm->mattype, (char **)&(*M)->mattype)); 406512fa691eSMatthew G. Knepley } 40669566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Convert, dm, 0, 0, 0)); 406767a56275SMatthew G Knepley } 40689566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)*M)); 40693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 407067a56275SMatthew G Knepley } 4071264ace61SBarry Smith 4072264ace61SBarry Smith /*--------------------------------------------------------------------------------------------------------------------*/ 4073264ace61SBarry Smith 4074264ace61SBarry Smith /*@C 4075bb7acecfSBarry Smith DMRegister - Adds a new `DM` type implementation 40761c84c290SBarry Smith 40771c84c290SBarry Smith Not Collective 40781c84c290SBarry Smith 40791c84c290SBarry Smith Input Parameters: 408020f4b53cSBarry Smith + sname - The name of a new user-defined creation routine 408120f4b53cSBarry Smith - function - The creation routine itself 408220f4b53cSBarry Smith 408320f4b53cSBarry Smith Level: advanced 40841c84c290SBarry Smith 4085*73ff1848SBarry Smith Note: 408620f4b53cSBarry Smith `DMRegister()` may be called multiple times to add several user-defined `DM`s 40871c84c290SBarry Smith 408860225df5SJacob Faibussowitsch Example Usage: 40891c84c290SBarry Smith .vb 4090bdf89e91SBarry Smith DMRegister("my_da", MyDMCreate); 40911c84c290SBarry Smith .ve 40921c84c290SBarry Smith 409320f4b53cSBarry Smith Then, your `DM` type can be chosen with the procedural interface via 40941c84c290SBarry Smith .vb 40951c84c290SBarry Smith DMCreate(MPI_Comm, DM *); 40961c84c290SBarry Smith DMSetType(DM,"my_da"); 40971c84c290SBarry Smith .ve 40981c84c290SBarry Smith or at runtime via the option 40991c84c290SBarry Smith .vb 41001c84c290SBarry Smith -da_type my_da 41011c84c290SBarry Smith .ve 4102264ace61SBarry Smith 41031cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMType`, `DMSetType()`, `DMRegisterAll()`, `DMRegisterDestroy()` 4104264ace61SBarry Smith @*/ 4105d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRegister(const char sname[], PetscErrorCode (*function)(DM)) 4106d71ae5a4SJacob Faibussowitsch { 4107264ace61SBarry Smith PetscFunctionBegin; 41089566063dSJacob Faibussowitsch PetscCall(DMInitializePackage()); 41099566063dSJacob Faibussowitsch PetscCall(PetscFunctionListAdd(&DMList, sname, function)); 41103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4111264ace61SBarry Smith } 4112264ace61SBarry Smith 4113b859378eSBarry Smith /*@C 4114bb7acecfSBarry Smith DMLoad - Loads a DM that has been stored in binary with `DMView()`. 4115b859378eSBarry Smith 411620f4b53cSBarry Smith Collective 4117b859378eSBarry Smith 4118b859378eSBarry Smith Input Parameters: 4119bb7acecfSBarry Smith + newdm - the newly loaded `DM`, this needs to have been created with `DMCreate()` or 4120bb7acecfSBarry Smith some related function before a call to `DMLoad()`. 4121bb7acecfSBarry Smith - viewer - binary file viewer, obtained from `PetscViewerBinaryOpen()` or 4122bb7acecfSBarry Smith `PETSCVIEWERHDF5` file viewer, obtained from `PetscViewerHDF5Open()` 4123b859378eSBarry Smith 4124b859378eSBarry Smith Level: intermediate 4125b859378eSBarry Smith 4126b859378eSBarry Smith Notes: 412755849f57SBarry Smith The type is determined by the data in the file, any type set into the DM before this call is ignored. 4128b859378eSBarry Smith 4129bb7acecfSBarry Smith Using `PETSCVIEWERHDF5` type with `PETSC_VIEWER_HDF5_PETSC` format, one can save multiple `DMPLEX` 4130bb7acecfSBarry Smith meshes in a single HDF5 file. This in turn requires one to name the `DMPLEX` object with `PetscObjectSetName()` 4131bb7acecfSBarry Smith before saving it with `DMView()` and before loading it with `DMLoad()` for identification of the mesh object. 4132cd7e8a5eSksagiyam 41331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscViewerBinaryOpen()`, `DMView()`, `MatLoad()`, `VecLoad()` 4134b859378eSBarry Smith @*/ 4135d71ae5a4SJacob Faibussowitsch PetscErrorCode DMLoad(DM newdm, PetscViewer viewer) 4136d71ae5a4SJacob Faibussowitsch { 41379331c7a4SMatthew G. Knepley PetscBool isbinary, ishdf5; 4138b859378eSBarry Smith 4139b859378eSBarry Smith PetscFunctionBegin; 4140b859378eSBarry Smith PetscValidHeaderSpecific(newdm, DM_CLASSID, 1); 4141b859378eSBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 41429566063dSJacob Faibussowitsch PetscCall(PetscViewerCheckReadable(viewer)); 41439566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 41449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 41459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(DM_Load, viewer, 0, 0, 0)); 41469331c7a4SMatthew G. Knepley if (isbinary) { 41479331c7a4SMatthew G. Knepley PetscInt classid; 41489331c7a4SMatthew G. Knepley char type[256]; 4149b859378eSBarry Smith 41509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, &classid, 1, NULL, PETSC_INT)); 41517a8be351SBarry Smith PetscCheck(classid == DM_FILE_CLASSID, PetscObjectComm((PetscObject)newdm), PETSC_ERR_ARG_WRONG, "Not DM next in file, classid found %d", (int)classid); 41529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, type, 256, NULL, PETSC_CHAR)); 41539566063dSJacob Faibussowitsch PetscCall(DMSetType(newdm, type)); 4154dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41559331c7a4SMatthew G. Knepley } else if (ishdf5) { 4156dbbe0bcdSBarry Smith PetscTryTypeMethod(newdm, load, viewer); 41579331c7a4SMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerBinaryOpen() or PetscViewerHDF5Open()"); 41589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(DM_Load, viewer, 0, 0, 0)); 41593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4160b859378eSBarry Smith } 4161b859378eSBarry Smith 41627da65231SMatthew G Knepley /******************************** FEM Support **********************************/ 41637da65231SMatthew G Knepley 41642ecf6ec3SMatthew G. Knepley PetscErrorCode DMPrintCellIndices(PetscInt c, const char name[], PetscInt len, const PetscInt x[]) 41652ecf6ec3SMatthew G. Knepley { 41662ecf6ec3SMatthew G. Knepley PetscInt f; 41672ecf6ec3SMatthew G. Knepley 41682ecf6ec3SMatthew G. Knepley PetscFunctionBegin; 41692ecf6ec3SMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41702ecf6ec3SMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %" PetscInt_FMT " |\n", x[f])); 41712ecf6ec3SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41722ecf6ec3SMatthew G. Knepley } 41732ecf6ec3SMatthew G. Knepley 4174d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellVector(PetscInt c, const char name[], PetscInt len, const PetscScalar x[]) 4175d71ae5a4SJacob Faibussowitsch { 41761d47ebbbSSatish Balay PetscInt f; 41771b30c384SMatthew G Knepley 41787da65231SMatthew G Knepley PetscFunctionBegin; 417963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 418048a46eb9SPierre Jolivet for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)PetscRealPart(x[f]))); 41813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41827da65231SMatthew G Knepley } 41837da65231SMatthew G Knepley 41845962854dSMatthew G. Knepley PetscErrorCode DMPrintCellVectorReal(PetscInt c, const char name[], PetscInt len, const PetscReal x[]) 41855962854dSMatthew G. Knepley { 41865962854dSMatthew G. Knepley PetscInt f; 41875962854dSMatthew G. Knepley 41885962854dSMatthew G. Knepley PetscFunctionBegin; 41895962854dSMatthew G. Knepley PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 41905962854dSMatthew G. Knepley for (f = 0; f < len; ++f) PetscCall(PetscPrintf(PETSC_COMM_SELF, " | %g |\n", (double)x[f])); 41915962854dSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 41925962854dSMatthew G. Knepley } 41935962854dSMatthew G. Knepley 4194d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintCellMatrix(PetscInt c, const char name[], PetscInt rows, PetscInt cols, const PetscScalar A[]) 4195d71ae5a4SJacob Faibussowitsch { 41961b30c384SMatthew G Knepley PetscInt f, g; 41977da65231SMatthew G Knepley 41987da65231SMatthew G Knepley PetscFunctionBegin; 419963a3b9bcSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Cell %" PetscInt_FMT " Element %s\n", c, name)); 42001d47ebbbSSatish Balay for (f = 0; f < rows; ++f) { 42019566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |")); 420248a46eb9SPierre Jolivet for (g = 0; g < cols; ++g) PetscCall(PetscPrintf(PETSC_COMM_SELF, " % 9.5g", (double)PetscRealPart(A[f * cols + g]))); 42039566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, " |\n")); 42047da65231SMatthew G Knepley } 42053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42067da65231SMatthew G Knepley } 4207e7c4fc90SDmitry Karpeev 4208d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPrintLocalVec(DM dm, const char name[], PetscReal tol, Vec X) 4209d71ae5a4SJacob Faibussowitsch { 42100c5b8624SToby Isaac PetscInt localSize, bs; 42110c5b8624SToby Isaac PetscMPIInt size; 42120c5b8624SToby Isaac Vec x, xglob; 42130c5b8624SToby Isaac const PetscScalar *xarray; 4214e759306cSMatthew G. Knepley 4215e759306cSMatthew G. Knepley PetscFunctionBegin; 42169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)dm), &size)); 42179566063dSJacob Faibussowitsch PetscCall(VecDuplicate(X, &x)); 42189566063dSJacob Faibussowitsch PetscCall(VecCopy(X, x)); 421993ec0da9SPierre Jolivet PetscCall(VecFilter(x, tol)); 42209566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PetscObjectComm((PetscObject)dm), "%s:\n", name)); 42210c5b8624SToby Isaac if (size > 1) { 42229566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &localSize)); 42239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xarray)); 42249566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(x, &bs)); 42259566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)dm), bs, localSize, PETSC_DETERMINE, xarray, &xglob)); 42260c5b8624SToby Isaac } else { 42270c5b8624SToby Isaac xglob = x; 42280c5b8624SToby Isaac } 42299566063dSJacob Faibussowitsch PetscCall(VecView(xglob, PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)dm)))); 42300c5b8624SToby Isaac if (size > 1) { 42319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xglob)); 42329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xarray)); 42330c5b8624SToby Isaac } 42349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 42353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4236e759306cSMatthew G. Knepley } 4237e759306cSMatthew G. Knepley 423888ed4aceSMatthew G Knepley /*@ 4239bb7acecfSBarry Smith DMGetSection - Get the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMGetLocalSection()`. Deprecated in v3.12 4240061576a5SJed Brown 4241061576a5SJed Brown Input Parameter: 4242bb7acecfSBarry Smith . dm - The `DM` 4243061576a5SJed Brown 4244061576a5SJed Brown Output Parameter: 4245bb7acecfSBarry Smith . section - The `PetscSection` 4246061576a5SJed Brown 424720f4b53cSBarry Smith Options Database Key: 4248bb7acecfSBarry Smith . -dm_petscsection_view - View the `PetscSection` created by the `DM` 4249061576a5SJed Brown 4250061576a5SJed Brown Level: advanced 4251061576a5SJed Brown 4252061576a5SJed Brown Notes: 4253bb7acecfSBarry Smith Use `DMGetLocalSection()` in new code. 4254061576a5SJed Brown 4255bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 4256061576a5SJed Brown 42571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetLocalSection()`, `DMSetLocalSection()`, `DMGetGlobalSection()` 4258061576a5SJed Brown @*/ 4259d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSection(DM dm, PetscSection *section) 4260d71ae5a4SJacob Faibussowitsch { 4261061576a5SJed Brown PetscFunctionBegin; 42629566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, section)); 42633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4264061576a5SJed Brown } 4265061576a5SJed Brown 4266061576a5SJed Brown /*@ 4267bb7acecfSBarry Smith DMGetLocalSection - Get the `PetscSection` encoding the local data layout for the `DM`. 426888ed4aceSMatthew G Knepley 426988ed4aceSMatthew G Knepley Input Parameter: 4270bb7acecfSBarry Smith . dm - The `DM` 427188ed4aceSMatthew G Knepley 427288ed4aceSMatthew G Knepley Output Parameter: 4273bb7acecfSBarry Smith . section - The `PetscSection` 427488ed4aceSMatthew G Knepley 427520f4b53cSBarry Smith Options Database Key: 4276bb7acecfSBarry Smith . -dm_petscsection_view - View the section created by the `DM` 4277e5893cccSMatthew G. Knepley 427888ed4aceSMatthew G Knepley Level: intermediate 427988ed4aceSMatthew G Knepley 4280bb7acecfSBarry Smith Note: 4281bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 428288ed4aceSMatthew G Knepley 42831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetGlobalSection()` 428488ed4aceSMatthew G Knepley @*/ 4285d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLocalSection(DM dm, PetscSection *section) 4286d71ae5a4SJacob Faibussowitsch { 428788ed4aceSMatthew G Knepley PetscFunctionBegin; 428888ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 42894f572ea9SToby Isaac PetscAssertPointer(section, 2); 42901bb6d2a8SBarry Smith if (!dm->localSection && dm->ops->createlocalsection) { 4291e5e52638SMatthew G. Knepley PetscInt d; 4292e5e52638SMatthew G. Knepley 429345480ffeSMatthew G. Knepley if (dm->setfromoptionscalled) { 429445480ffeSMatthew G. Knepley PetscObject obj = (PetscObject)dm; 429545480ffeSMatthew G. Knepley PetscViewer viewer; 429645480ffeSMatthew G. Knepley PetscViewerFormat format; 429745480ffeSMatthew G. Knepley PetscBool flg; 429845480ffeSMatthew G. Knepley 42999566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm(obj), obj->options, obj->prefix, "-dm_petscds_view", &viewer, &format, &flg)); 43009566063dSJacob Faibussowitsch if (flg) PetscCall(PetscViewerPushFormat(viewer, format)); 430145480ffeSMatthew G. Knepley for (d = 0; d < dm->Nds; ++d) { 43029566063dSJacob Faibussowitsch PetscCall(PetscDSSetFromOptions(dm->probs[d].ds)); 43039566063dSJacob Faibussowitsch if (flg) PetscCall(PetscDSView(dm->probs[d].ds, viewer)); 430445480ffeSMatthew G. Knepley } 430545480ffeSMatthew G. Knepley if (flg) { 43069566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 43079566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 4308cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 430945480ffeSMatthew G. Knepley } 431045480ffeSMatthew G. Knepley } 4311dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, createlocalsection); 43129566063dSJacob Faibussowitsch if (dm->localSection) PetscCall(PetscObjectViewFromOptions((PetscObject)dm->localSection, NULL, "-dm_petscsection_view")); 43132f0f8703SMatthew G. Knepley } 43141bb6d2a8SBarry Smith *section = dm->localSection; 43153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 431688ed4aceSMatthew G Knepley } 431788ed4aceSMatthew G Knepley 431888ed4aceSMatthew G Knepley /*@ 4319bb7acecfSBarry Smith DMSetSection - Set the `PetscSection` encoding the local data layout for the `DM`. This is equivalent to `DMSetLocalSection()`. Deprecated in v3.12 4320061576a5SJed Brown 4321061576a5SJed Brown Input Parameters: 4322bb7acecfSBarry Smith + dm - The `DM` 4323bb7acecfSBarry Smith - section - The `PetscSection` 4324061576a5SJed Brown 4325061576a5SJed Brown Level: advanced 4326061576a5SJed Brown 4327061576a5SJed Brown Notes: 4328bb7acecfSBarry Smith Use `DMSetLocalSection()` in new code. 4329061576a5SJed Brown 4330bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4331061576a5SJed Brown 43321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()`, `DMSetGlobalSection()` 4333061576a5SJed Brown @*/ 4334d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSection(DM dm, PetscSection section) 4335d71ae5a4SJacob Faibussowitsch { 4336061576a5SJed Brown PetscFunctionBegin; 43379566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm, section)); 43383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4339061576a5SJed Brown } 4340061576a5SJed Brown 4341061576a5SJed Brown /*@ 4342bb7acecfSBarry Smith DMSetLocalSection - Set the `PetscSection` encoding the local data layout for the `DM`. 434388ed4aceSMatthew G Knepley 434488ed4aceSMatthew G Knepley Input Parameters: 4345bb7acecfSBarry Smith + dm - The `DM` 4346bb7acecfSBarry Smith - section - The `PetscSection` 434788ed4aceSMatthew G Knepley 434888ed4aceSMatthew G Knepley Level: intermediate 434988ed4aceSMatthew G Knepley 4350bb7acecfSBarry Smith Note: 4351bb7acecfSBarry Smith Any existing Section will be destroyed 435288ed4aceSMatthew G Knepley 43531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMSetGlobalSection()` 435488ed4aceSMatthew G Knepley @*/ 4355d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLocalSection(DM dm, PetscSection section) 4356d71ae5a4SJacob Faibussowitsch { 4357c473ab19SMatthew G. Knepley PetscInt numFields = 0; 4358af122d2aSMatthew G Knepley PetscInt f; 435988ed4aceSMatthew G Knepley 436088ed4aceSMatthew G Knepley PetscFunctionBegin; 436188ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4362b9d85ea2SLisandro Dalcin if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 43639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 43649566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->localSection)); 43651bb6d2a8SBarry Smith dm->localSection = section; 43669566063dSJacob Faibussowitsch if (section) PetscCall(PetscSectionGetNumFields(dm->localSection, &numFields)); 4367af122d2aSMatthew G Knepley if (numFields) { 43689566063dSJacob Faibussowitsch PetscCall(DMSetNumFields(dm, numFields)); 4369af122d2aSMatthew G Knepley for (f = 0; f < numFields; ++f) { 43700f21e855SMatthew G. Knepley PetscObject disc; 4371af122d2aSMatthew G Knepley const char *name; 4372af122d2aSMatthew G Knepley 43739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldName(dm->localSection, f, &name)); 43749566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, &disc)); 43759566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName(disc, name)); 4376af122d2aSMatthew G Knepley } 4377af122d2aSMatthew G Knepley } 437850350c8eSStefano Zampini /* The global section and the SectionSF will be rebuilt 437950350c8eSStefano Zampini in the next call to DMGetGlobalSection() and DMGetSectionSF(). */ 43809566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 438150350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 438252947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 438350350c8eSStefano Zampini 438450350c8eSStefano Zampini /* Clear scratch vectors */ 438550350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 438650350c8eSStefano Zampini PetscCall(DMClearLocalVectors(dm)); 438750350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 438850350c8eSStefano Zampini PetscCall(DMClearNamedLocalVectors(dm)); 43893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 439088ed4aceSMatthew G Knepley } 439188ed4aceSMatthew G Knepley 4392adc21957SMatthew G. Knepley /*@C 4393adc21957SMatthew G. Knepley DMCreateSectionPermutation - Create a permutation of the `PetscSection` chart and optionally a blokc structure. 4394adc21957SMatthew G. Knepley 4395adc21957SMatthew G. Knepley Input Parameter: 4396adc21957SMatthew G. Knepley . dm - The `DM` 4397adc21957SMatthew G. Knepley 4398adc21957SMatthew G. Knepley Output Parameter: 4399adc21957SMatthew G. Knepley + perm - A permutation of the mesh points in the chart 4400adc21957SMatthew G. Knepley - blockStarts - A high bit is set for the point that begins every block, or NULL for default blocking 4401adc21957SMatthew G. Knepley 4402adc21957SMatthew G. Knepley Level: developer 4403adc21957SMatthew G. Knepley 4404adc21957SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `PetscSection`, `DMGetLocalSection()`, `DMGetGlobalSection()` 4405adc21957SMatthew G. Knepley @*/ 4406adc21957SMatthew G. Knepley PetscErrorCode DMCreateSectionPermutation(DM dm, IS *perm, PetscBT *blockStarts) 4407adc21957SMatthew G. Knepley { 4408adc21957SMatthew G. Knepley PetscFunctionBegin; 4409adc21957SMatthew G. Knepley *perm = NULL; 4410adc21957SMatthew G. Knepley *blockStarts = NULL; 4411adc21957SMatthew G. Knepley PetscTryTypeMethod(dm, createsectionpermutation, perm, blockStarts); 4412adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 4413adc21957SMatthew G. Knepley } 4414adc21957SMatthew G. Knepley 44159435951eSToby Isaac /*@ 4416bb7acecfSBarry Smith DMGetDefaultConstraints - Get the `PetscSection` and `Mat` that specify the local constraint interpolation. See `DMSetDefaultConstraints()` for a description of the purpose of constraint interpolation. 44179435951eSToby Isaac 441820f4b53cSBarry Smith not Collective 4419e228b242SToby Isaac 44209435951eSToby Isaac Input Parameter: 4421bb7acecfSBarry Smith . dm - The `DM` 44229435951eSToby Isaac 4423d8d19677SJose E. Roman Output Parameters: 442420f4b53cSBarry Smith + section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Returns `NULL` if there are no local constraints. 442520f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section. Returns `NULL` if there are no local constraints. 442679769bd5SJed Brown - bias - Vector containing bias to be added to constrained dofs 44279435951eSToby Isaac 44289435951eSToby Isaac Level: advanced 44299435951eSToby Isaac 4430bb7acecfSBarry Smith Note: 4431bb7acecfSBarry Smith This gets borrowed references, so the user should not destroy the `PetscSection`, `Mat`, or `Vec`. 44329435951eSToby Isaac 44331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDefaultConstraints()` 44349435951eSToby Isaac @*/ 4435d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDefaultConstraints(DM dm, PetscSection *section, Mat *mat, Vec *bias) 4436d71ae5a4SJacob Faibussowitsch { 44379435951eSToby Isaac PetscFunctionBegin; 44389435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4439dbbe0bcdSBarry Smith if (!dm->defaultConstraint.section && !dm->defaultConstraint.mat && dm->ops->createdefaultconstraints) PetscUseTypeMethod(dm, createdefaultconstraints); 44403b8ba7d1SJed Brown if (section) *section = dm->defaultConstraint.section; 44413b8ba7d1SJed Brown if (mat) *mat = dm->defaultConstraint.mat; 444279769bd5SJed Brown if (bias) *bias = dm->defaultConstraint.bias; 44433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44449435951eSToby Isaac } 44459435951eSToby Isaac 44469435951eSToby Isaac /*@ 4447bb7acecfSBarry Smith DMSetDefaultConstraints - Set the `PetscSection` and `Mat` that specify the local constraint interpolation. 44489435951eSToby Isaac 444920f4b53cSBarry Smith Collective 4450e228b242SToby Isaac 44519435951eSToby Isaac Input Parameters: 4452bb7acecfSBarry Smith + dm - The `DM` 4453bb7acecfSBarry Smith . section - The `PetscSection` describing the range of the constraint matrix: relates rows of the constraint matrix to dofs of the default section. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 445420f4b53cSBarry Smith . mat - The `Mat` that interpolates local constraints: its width should be the layout size of the default section: `NULL` indicates no constraints. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 445520f4b53cSBarry Smith - bias - A bias vector to be added to constrained values in the local vector. `NULL` indicates no bias. Must have a local communicator (`PETSC_COMM_SELF` or derivative). 44569435951eSToby Isaac 44579435951eSToby Isaac Level: advanced 44589435951eSToby Isaac 445920f4b53cSBarry Smith Notes: 446020f4b53cSBarry Smith If a constraint matrix is specified, then it is applied during `DMGlobalToLocalEnd()` when mode is `INSERT_VALUES`, `INSERT_BC_VALUES`, or `INSERT_ALL_VALUES`. Without a constraint matrix, the local vector l returned by `DMGlobalToLocalEnd()` contains values that have been scattered from a global vector without modification; with a constraint matrix A, l is modified by computing c = A * l + bias, l[s[i]] = c[i], where the scatter s is defined by the `PetscSection` returned by `DMGetDefaultConstraints()`. 446120f4b53cSBarry Smith 446220f4b53cSBarry Smith If a constraint matrix is specified, then its adjoint is applied during `DMLocalToGlobalBegin()` when mode is `ADD_VALUES`, `ADD_BC_VALUES`, or `ADD_ALL_VALUES`. Without a constraint matrix, the local vector l is accumulated into a global vector without modification; with a constraint matrix A, l is first modified by computing c[i] = l[s[i]], l[s[i]] = 0, l = l + A'*c, which is the adjoint of the operation described above. Any bias, if specified, is ignored when accumulating. 446320f4b53cSBarry Smith 4464bb7acecfSBarry Smith This increments the references of the `PetscSection`, `Mat`, and `Vec`, so they user can destroy them. 44659435951eSToby Isaac 44661cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDefaultConstraints()` 44679435951eSToby Isaac @*/ 4468d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDefaultConstraints(DM dm, PetscSection section, Mat mat, Vec bias) 4469d71ae5a4SJacob Faibussowitsch { 4470e228b242SToby Isaac PetscMPIInt result; 44719435951eSToby Isaac 44729435951eSToby Isaac PetscFunctionBegin; 44739435951eSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4474e228b242SToby Isaac if (section) { 4475e228b242SToby Isaac PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 44769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)section), &result)); 44777a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint section must have local communicator"); 4478e228b242SToby Isaac } 4479e228b242SToby Isaac if (mat) { 4480e228b242SToby Isaac PetscValidHeaderSpecific(mat, MAT_CLASSID, 3); 44819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)mat), &result)); 44827a8be351SBarry Smith PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint matrix must have local communicator"); 4483e228b242SToby Isaac } 448479769bd5SJed Brown if (bias) { 448579769bd5SJed Brown PetscValidHeaderSpecific(bias, VEC_CLASSID, 4); 44869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PETSC_COMM_SELF, PetscObjectComm((PetscObject)bias), &result)); 448779769bd5SJed Brown PetscCheck(result == MPI_CONGRUENT || result == MPI_IDENT, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "constraint bias must have local communicator"); 448879769bd5SJed Brown } 44899566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 44909566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->defaultConstraint.section)); 44913b8ba7d1SJed Brown dm->defaultConstraint.section = section; 44929566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mat)); 44939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&dm->defaultConstraint.mat)); 44943b8ba7d1SJed Brown dm->defaultConstraint.mat = mat; 44959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)bias)); 44969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&dm->defaultConstraint.bias)); 449779769bd5SJed Brown dm->defaultConstraint.bias = bias; 44983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 44999435951eSToby Isaac } 45009435951eSToby Isaac 4501497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 4502507e4973SMatthew G. Knepley /* 4503bb7acecfSBarry Smith DMDefaultSectionCheckConsistency - Check the consistentcy of the global and local sections. Generates and error if they are not consistent. 4504507e4973SMatthew G. Knepley 4505507e4973SMatthew G. Knepley Input Parameters: 4506bb7acecfSBarry Smith + dm - The `DM` 4507bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4508bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 4509507e4973SMatthew G. Knepley 4510507e4973SMatthew G. Knepley Level: intermediate 4511507e4973SMatthew G. Knepley 45121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()` 4513507e4973SMatthew G. Knepley */ 4514d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDefaultSectionCheckConsistency_Internal(DM dm, PetscSection localSection, PetscSection globalSection) 4515d71ae5a4SJacob Faibussowitsch { 4516507e4973SMatthew G. Knepley MPI_Comm comm; 4517507e4973SMatthew G. Knepley PetscLayout layout; 4518507e4973SMatthew G. Knepley const PetscInt *ranges; 4519507e4973SMatthew G. Knepley PetscInt pStart, pEnd, p, nroots; 4520507e4973SMatthew G. Knepley PetscMPIInt size, rank; 4521507e4973SMatthew G. Knepley PetscBool valid = PETSC_TRUE, gvalid; 4522507e4973SMatthew G. Knepley 4523507e4973SMatthew G. Knepley PetscFunctionBegin; 45249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 4525507e4973SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 45279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 45289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(globalSection, &pStart, &pEnd)); 45299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstrainedStorageSize(globalSection, &nroots)); 45309566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &layout)); 45319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(layout, 1)); 45329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(layout, nroots)); 45339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(layout)); 45349566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(layout, &ranges)); 4535507e4973SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 4536f741bcd2SMatthew G. Knepley PetscInt dof, cdof, off, gdof, gcdof, goff, gsize, d; 4537507e4973SMatthew G. Knepley 45389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(localSection, p, &dof)); 45399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(localSection, p, &off)); 45409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(localSection, p, &cdof)); 45419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(globalSection, p, &gdof)); 45429566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(globalSection, p, &gcdof)); 45439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(globalSection, p, &goff)); 4544507e4973SMatthew G. Knepley if (!gdof) continue; /* Censored point */ 45459371c9d4SSatish Balay if ((gdof < 0 ? -(gdof + 1) : gdof) != dof) { 45469371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global dof %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local dof %" PetscInt_FMT "\n", rank, gdof, p, dof)); 45479371c9d4SSatish Balay valid = PETSC_FALSE; 45489371c9d4SSatish Balay } 45499371c9d4SSatish Balay if (gcdof && (gcdof != cdof)) { 45509371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Global constraints %" PetscInt_FMT " for point %" PetscInt_FMT " not equal to local constraints %" PetscInt_FMT "\n", rank, gcdof, p, cdof)); 45519371c9d4SSatish Balay valid = PETSC_FALSE; 45529371c9d4SSatish Balay } 4553507e4973SMatthew G. Knepley if (gdof < 0) { 4554507e4973SMatthew G. Knepley gsize = gdof < 0 ? -(gdof + 1) - gcdof : gdof - gcdof; 4555507e4973SMatthew G. Knepley for (d = 0; d < gsize; ++d) { 4556507e4973SMatthew G. Knepley PetscInt offset = -(goff + 1) + d, r; 4557507e4973SMatthew G. Knepley 45589566063dSJacob Faibussowitsch PetscCall(PetscFindInt(offset, size + 1, ranges, &r)); 4559507e4973SMatthew G. Knepley if (r < 0) r = -(r + 2); 45609371c9d4SSatish Balay if ((r < 0) || (r >= size)) { 45619371c9d4SSatish Balay PetscCall(PetscSynchronizedPrintf(comm, "[%d]Point %" PetscInt_FMT " mapped to invalid process %" PetscInt_FMT " (%" PetscInt_FMT ", %" PetscInt_FMT ")\n", rank, p, r, gdof, goff)); 45629371c9d4SSatish Balay valid = PETSC_FALSE; 45639371c9d4SSatish Balay break; 45649371c9d4SSatish Balay } 4565507e4973SMatthew G. Knepley } 4566507e4973SMatthew G. Knepley } 4567507e4973SMatthew G. Knepley } 45689566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&layout)); 45699566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, NULL)); 45701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&valid, &gvalid, 1, MPIU_BOOL, MPI_LAND, comm)); 4571507e4973SMatthew G. Knepley if (!gvalid) { 45729566063dSJacob Faibussowitsch PetscCall(DMView(dm, NULL)); 4573507e4973SMatthew G. Knepley SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Inconsistent local and global sections"); 4574507e4973SMatthew G. Knepley } 45753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4576507e4973SMatthew G. Knepley } 4577f741bcd2SMatthew G. Knepley #endif 4578507e4973SMatthew G. Knepley 45795f06a3ddSJed Brown static PetscErrorCode DMGetIsoperiodicPointSF_Internal(DM dm, PetscSF *sf) 45806725e60dSJed Brown { 45816725e60dSJed Brown PetscErrorCode (*f)(DM, PetscSF *); 45824d86920dSPierre Jolivet 45836725e60dSJed Brown PetscFunctionBegin; 45846725e60dSJed Brown PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 45854f572ea9SToby Isaac PetscAssertPointer(sf, 2); 45865f06a3ddSJed Brown PetscCall(PetscObjectQueryFunction((PetscObject)dm, "DMGetIsoperiodicPointSF_C", &f)); 45876725e60dSJed Brown if (f) PetscCall(f(dm, sf)); 45886725e60dSJed Brown else *sf = dm->sf; 45893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 45906725e60dSJed Brown } 45916725e60dSJed Brown 459288ed4aceSMatthew G Knepley /*@ 4593bb7acecfSBarry Smith DMGetGlobalSection - Get the `PetscSection` encoding the global data layout for the `DM`. 459488ed4aceSMatthew G Knepley 459520f4b53cSBarry Smith Collective 45968b1ab98fSJed Brown 459788ed4aceSMatthew G Knepley Input Parameter: 4598bb7acecfSBarry Smith . dm - The `DM` 459988ed4aceSMatthew G Knepley 460088ed4aceSMatthew G Knepley Output Parameter: 4601bb7acecfSBarry Smith . section - The `PetscSection` 460288ed4aceSMatthew G Knepley 460388ed4aceSMatthew G Knepley Level: intermediate 460488ed4aceSMatthew G Knepley 4605bb7acecfSBarry Smith Note: 4606bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSection`. 460788ed4aceSMatthew G Knepley 46081cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLocalSection()`, `DMGetLocalSection()` 460988ed4aceSMatthew G Knepley @*/ 4610d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetGlobalSection(DM dm, PetscSection *section) 4611d71ae5a4SJacob Faibussowitsch { 461288ed4aceSMatthew G Knepley PetscFunctionBegin; 461388ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46144f572ea9SToby Isaac PetscAssertPointer(section, 2); 46151bb6d2a8SBarry Smith if (!dm->globalSection) { 4616fd59a867SMatthew G. Knepley PetscSection s; 46176725e60dSJed Brown PetscSF sf; 4618fd59a867SMatthew G. Knepley 46199566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 46207a8be351SBarry Smith PetscCheck(s, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a default PetscSection in order to create a global PetscSection"); 46217a8be351SBarry Smith PetscCheck(dm->sf, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "DM must have a point PetscSF in order to create a global PetscSection"); 46225f06a3ddSJed Brown PetscCall(DMGetIsoperiodicPointSF_Internal(dm, &sf)); 4623eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(s, sf, PETSC_TRUE, PETSC_FALSE, PETSC_FALSE, &dm->globalSection)); 46249566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&dm->map)); 46259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetValueLayout(PetscObjectComm((PetscObject)dm), dm->globalSection, &dm->map)); 46269566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(dm->globalSection, NULL, "-global_section_view")); 462788ed4aceSMatthew G Knepley } 46281bb6d2a8SBarry Smith *section = dm->globalSection; 46293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 463088ed4aceSMatthew G Knepley } 463188ed4aceSMatthew G Knepley 4632b21d0597SMatthew G Knepley /*@ 4633bb7acecfSBarry Smith DMSetGlobalSection - Set the `PetscSection` encoding the global data layout for the `DM`. 4634b21d0597SMatthew G Knepley 4635b21d0597SMatthew G Knepley Input Parameters: 4636bb7acecfSBarry Smith + dm - The `DM` 46372fe279fdSBarry Smith - section - The PetscSection, or `NULL` 4638b21d0597SMatthew G Knepley 4639b21d0597SMatthew G Knepley Level: intermediate 4640b21d0597SMatthew G Knepley 4641bb7acecfSBarry Smith Note: 4642bb7acecfSBarry Smith Any existing `PetscSection` will be destroyed 4643b21d0597SMatthew G Knepley 46441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetGlobalSection()`, `DMSetLocalSection()` 4645b21d0597SMatthew G Knepley @*/ 4646d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetGlobalSection(DM dm, PetscSection section) 4647d71ae5a4SJacob Faibussowitsch { 4648b21d0597SMatthew G Knepley PetscFunctionBegin; 4649b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46505080bbdbSMatthew G Knepley if (section) PetscValidHeaderSpecific(section, PETSC_SECTION_CLASSID, 2); 46519566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)section)); 46529566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&dm->globalSection)); 46531bb6d2a8SBarry Smith dm->globalSection = section; 4654497880caSRichard Tran Mills #if defined(PETSC_USE_DEBUG) 46559566063dSJacob Faibussowitsch if (section) PetscCall(DMDefaultSectionCheckConsistency_Internal(dm, dm->localSection, section)); 4656507e4973SMatthew G. Knepley #endif 465750350c8eSStefano Zampini /* Clear global scratch vectors and sectionSF */ 465850350c8eSStefano Zampini PetscCall(PetscSFDestroy(&dm->sectionSF)); 465952947b74SStefano Zampini PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 466050350c8eSStefano Zampini PetscCall(DMClearGlobalVectors(dm)); 466150350c8eSStefano Zampini PetscCall(DMClearNamedGlobalVectors(dm)); 46623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4663b21d0597SMatthew G Knepley } 4664b21d0597SMatthew G Knepley 466588ed4aceSMatthew G Knepley /*@ 4666bb7acecfSBarry Smith DMGetSectionSF - Get the `PetscSF` encoding the parallel dof overlap for the `DM`. If it has not been set, 4667bb7acecfSBarry Smith it is created from the default `PetscSection` layouts in the `DM`. 466888ed4aceSMatthew G Knepley 466988ed4aceSMatthew G Knepley Input Parameter: 4670bb7acecfSBarry Smith . dm - The `DM` 467188ed4aceSMatthew G Knepley 467288ed4aceSMatthew G Knepley Output Parameter: 4673bb7acecfSBarry Smith . sf - The `PetscSF` 467488ed4aceSMatthew G Knepley 467588ed4aceSMatthew G Knepley Level: intermediate 467688ed4aceSMatthew G Knepley 4677bb7acecfSBarry Smith Note: 4678bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 467988ed4aceSMatthew G Knepley 46801cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetSectionSF()`, `DMCreateSectionSF()` 468188ed4aceSMatthew G Knepley @*/ 4682d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetSectionSF(DM dm, PetscSF *sf) 4683d71ae5a4SJacob Faibussowitsch { 468488ed4aceSMatthew G Knepley PetscInt nroots; 468588ed4aceSMatthew G Knepley 468688ed4aceSMatthew G Knepley PetscFunctionBegin; 468788ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 46884f572ea9SToby Isaac PetscAssertPointer(sf, 2); 468948a46eb9SPierre Jolivet if (!dm->sectionSF) PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)dm), &dm->sectionSF)); 46909566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(dm->sectionSF, &nroots, NULL, NULL, NULL)); 469188ed4aceSMatthew G Knepley if (nroots < 0) { 469288ed4aceSMatthew G Knepley PetscSection section, gSection; 469388ed4aceSMatthew G Knepley 46949566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 469531ea6d37SMatthew G Knepley if (section) { 46969566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(dm, &gSection)); 46979566063dSJacob Faibussowitsch PetscCall(DMCreateSectionSF(dm, section, gSection)); 469831ea6d37SMatthew G Knepley } else { 46990298fd71SBarry Smith *sf = NULL; 47003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470131ea6d37SMatthew G Knepley } 470288ed4aceSMatthew G Knepley } 47031bb6d2a8SBarry Smith *sf = dm->sectionSF; 47043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470588ed4aceSMatthew G Knepley } 470688ed4aceSMatthew G Knepley 470788ed4aceSMatthew G Knepley /*@ 4708bb7acecfSBarry Smith DMSetSectionSF - Set the `PetscSF` encoding the parallel dof overlap for the `DM` 470988ed4aceSMatthew G Knepley 471088ed4aceSMatthew G Knepley Input Parameters: 4711bb7acecfSBarry Smith + dm - The `DM` 4712bb7acecfSBarry Smith - sf - The `PetscSF` 471388ed4aceSMatthew G Knepley 471488ed4aceSMatthew G Knepley Level: intermediate 471588ed4aceSMatthew G Knepley 4716bb7acecfSBarry Smith Note: 4717bb7acecfSBarry Smith Any previous `PetscSF` is destroyed 471888ed4aceSMatthew G Knepley 47191cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMCreateSectionSF()` 472088ed4aceSMatthew G Knepley @*/ 4721d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetSectionSF(DM dm, PetscSF sf) 4722d71ae5a4SJacob Faibussowitsch { 472388ed4aceSMatthew G Knepley PetscFunctionBegin; 472488ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4725b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 47269566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 47279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sectionSF)); 47281bb6d2a8SBarry Smith dm->sectionSF = sf; 47293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 473088ed4aceSMatthew G Knepley } 473188ed4aceSMatthew G Knepley 473288ed4aceSMatthew G Knepley /*@C 4733bb7acecfSBarry Smith DMCreateSectionSF - Create the `PetscSF` encoding the parallel dof overlap for the `DM` based upon the `PetscSection`s 473488ed4aceSMatthew G Knepley describing the data layout. 473588ed4aceSMatthew G Knepley 473688ed4aceSMatthew G Knepley Input Parameters: 4737bb7acecfSBarry Smith + dm - The `DM` 4738bb7acecfSBarry Smith . localSection - `PetscSection` describing the local data layout 4739bb7acecfSBarry Smith - globalSection - `PetscSection` describing the global data layout 474088ed4aceSMatthew G Knepley 47411bb6d2a8SBarry Smith Level: developer 47421bb6d2a8SBarry Smith 4743bb7acecfSBarry Smith Note: 4744bb7acecfSBarry Smith One usually uses `DMGetSectionSF()` to obtain the `PetscSF` 4745bb7acecfSBarry Smith 4746*73ff1848SBarry Smith Developer Note: 4747bb7acecfSBarry Smith Since this routine has for arguments the two sections from the `DM` and puts the resulting `PetscSF` 4748bb7acecfSBarry Smith directly into the `DM`, perhaps this function should not take the local and global sections as 4749bb7acecfSBarry Smith input and should just obtain them from the `DM`? 47501bb6d2a8SBarry Smith 47511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMGetLocalSection()`, `DMGetGlobalSection()` 475288ed4aceSMatthew G Knepley @*/ 4753d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateSectionSF(DM dm, PetscSection localSection, PetscSection globalSection) 4754d71ae5a4SJacob Faibussowitsch { 475588ed4aceSMatthew G Knepley PetscFunctionBegin; 475688ed4aceSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphSection(dm->sectionSF, localSection, globalSection)); 47583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 475988ed4aceSMatthew G Knepley } 4760af122d2aSMatthew G Knepley 4761b21d0597SMatthew G Knepley /*@ 4762bb7acecfSBarry Smith DMGetPointSF - Get the `PetscSF` encoding the parallel section point overlap for the `DM`. 4763bb7acecfSBarry Smith 4764bb7acecfSBarry Smith Not collective but the resulting `PetscSF` is collective 4765b21d0597SMatthew G Knepley 4766b21d0597SMatthew G Knepley Input Parameter: 4767bb7acecfSBarry Smith . dm - The `DM` 4768b21d0597SMatthew G Knepley 4769b21d0597SMatthew G Knepley Output Parameter: 4770bb7acecfSBarry Smith . sf - The `PetscSF` 4771b21d0597SMatthew G Knepley 4772b21d0597SMatthew G Knepley Level: intermediate 4773b21d0597SMatthew G Knepley 4774bb7acecfSBarry Smith Note: 4775bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 4776b21d0597SMatthew G Knepley 47771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4778b21d0597SMatthew G Knepley @*/ 4779d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetPointSF(DM dm, PetscSF *sf) 4780d71ae5a4SJacob Faibussowitsch { 4781b21d0597SMatthew G Knepley PetscFunctionBegin; 4782b21d0597SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 47834f572ea9SToby Isaac PetscAssertPointer(sf, 2); 4784b21d0597SMatthew G Knepley *sf = dm->sf; 47853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4786b21d0597SMatthew G Knepley } 4787b21d0597SMatthew G Knepley 4788057b4bcdSMatthew G Knepley /*@ 4789bb7acecfSBarry Smith DMSetPointSF - Set the `PetscSF` encoding the parallel section point overlap for the `DM`. 4790bb7acecfSBarry Smith 479120f4b53cSBarry Smith Collective 4792057b4bcdSMatthew G Knepley 4793057b4bcdSMatthew G Knepley Input Parameters: 4794bb7acecfSBarry Smith + dm - The `DM` 4795bb7acecfSBarry Smith - sf - The `PetscSF` 4796057b4bcdSMatthew G Knepley 4797057b4bcdSMatthew G Knepley Level: intermediate 4798057b4bcdSMatthew G Knepley 47991cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetPointSF()`, `DMGetSectionSF()`, `DMSetSectionSF()`, `DMCreateSectionSF()` 4800057b4bcdSMatthew G Knepley @*/ 4801d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetPointSF(DM dm, PetscSF sf) 4802d71ae5a4SJacob Faibussowitsch { 4803057b4bcdSMatthew G Knepley PetscFunctionBegin; 4804057b4bcdSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 4805b9d85ea2SLisandro Dalcin if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48069566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48079566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sf)); 4808057b4bcdSMatthew G Knepley dm->sf = sf; 48093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4810057b4bcdSMatthew G Knepley } 4811057b4bcdSMatthew G Knepley 48124f37162bSMatthew G. Knepley /*@ 4813bb7acecfSBarry Smith DMGetNaturalSF - Get the `PetscSF` encoding the map back to the original mesh ordering 48144f37162bSMatthew G. Knepley 48154f37162bSMatthew G. Knepley Input Parameter: 4816bb7acecfSBarry Smith . dm - The `DM` 48174f37162bSMatthew G. Knepley 48184f37162bSMatthew G. Knepley Output Parameter: 4819bb7acecfSBarry Smith . sf - The `PetscSF` 48204f37162bSMatthew G. Knepley 48214f37162bSMatthew G. Knepley Level: intermediate 48224f37162bSMatthew G. Knepley 4823bb7acecfSBarry Smith Note: 4824bb7acecfSBarry Smith This gets a borrowed reference, so the user should not destroy this `PetscSF`. 48254f37162bSMatthew G. Knepley 48261cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48274f37162bSMatthew G. Knepley @*/ 4828d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNaturalSF(DM dm, PetscSF *sf) 4829d71ae5a4SJacob Faibussowitsch { 48304f37162bSMatthew G. Knepley PetscFunctionBegin; 48314f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48324f572ea9SToby Isaac PetscAssertPointer(sf, 2); 48334f37162bSMatthew G. Knepley *sf = dm->sfNatural; 48343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48354f37162bSMatthew G. Knepley } 48364f37162bSMatthew G. Knepley 48374f37162bSMatthew G. Knepley /*@ 48384f37162bSMatthew G. Knepley DMSetNaturalSF - Set the PetscSF encoding the map back to the original mesh ordering 48394f37162bSMatthew G. Knepley 48404f37162bSMatthew G. Knepley Input Parameters: 48414f37162bSMatthew G. Knepley + dm - The DM 48424f37162bSMatthew G. Knepley - sf - The PetscSF 48434f37162bSMatthew G. Knepley 48444f37162bSMatthew G. Knepley Level: intermediate 48454f37162bSMatthew G. Knepley 48461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNaturalSF()`, `DMSetUseNatural()`, `DMGetUseNatural()`, `DMPlexCreateGlobalToNaturalSF()`, `DMPlexDistribute()` 48474f37162bSMatthew G. Knepley @*/ 4848d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNaturalSF(DM dm, PetscSF sf) 4849d71ae5a4SJacob Faibussowitsch { 48504f37162bSMatthew G. Knepley PetscFunctionBegin; 48514f37162bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 48524f37162bSMatthew G. Knepley if (sf) PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 2); 48539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)sf)); 48549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dm->sfNatural)); 48554f37162bSMatthew G. Knepley dm->sfNatural = sf; 48563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48574f37162bSMatthew G. Knepley } 48584f37162bSMatthew G. Knepley 4859d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMSetDefaultAdjacency_Private(DM dm, PetscInt f, PetscObject disc) 4860d71ae5a4SJacob Faibussowitsch { 486134aa8a36SMatthew G. Knepley PetscClassId id; 486234aa8a36SMatthew G. Knepley 486334aa8a36SMatthew G. Knepley PetscFunctionBegin; 48649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 486534aa8a36SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 48669566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 486734aa8a36SMatthew G. Knepley } else if (id == PETSCFV_CLASSID) { 48689566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_TRUE, PETSC_FALSE)); 486917c1d62eSMatthew G. Knepley } else { 48709566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, f, PETSC_FALSE, PETSC_TRUE)); 487134aa8a36SMatthew G. Knepley } 48723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 487334aa8a36SMatthew G. Knepley } 487434aa8a36SMatthew G. Knepley 4875d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMFieldEnlarge_Static(DM dm, PetscInt NfNew) 4876d71ae5a4SJacob Faibussowitsch { 487744a7f3ddSMatthew G. Knepley RegionField *tmpr; 487844a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf, f; 487944a7f3ddSMatthew G. Knepley 488044a7f3ddSMatthew G. Knepley PetscFunctionBegin; 48813ba16761SJacob Faibussowitsch if (Nf >= NfNew) PetscFunctionReturn(PETSC_SUCCESS); 48829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NfNew, &tmpr)); 488344a7f3ddSMatthew G. Knepley for (f = 0; f < Nf; ++f) tmpr[f] = dm->fields[f]; 48849371c9d4SSatish Balay for (f = Nf; f < NfNew; ++f) { 48859371c9d4SSatish Balay tmpr[f].disc = NULL; 48869371c9d4SSatish Balay tmpr[f].label = NULL; 48879371c9d4SSatish Balay tmpr[f].avoidTensor = PETSC_FALSE; 48889371c9d4SSatish Balay } 48899566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 489044a7f3ddSMatthew G. Knepley dm->Nf = NfNew; 489144a7f3ddSMatthew G. Knepley dm->fields = tmpr; 48923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 489344a7f3ddSMatthew G. Knepley } 489444a7f3ddSMatthew G. Knepley 489544a7f3ddSMatthew G. Knepley /*@ 489620f4b53cSBarry Smith DMClearFields - Remove all fields from the `DM` 489744a7f3ddSMatthew G. Knepley 489820f4b53cSBarry Smith Logically Collective 489944a7f3ddSMatthew G. Knepley 490044a7f3ddSMatthew G. Knepley Input Parameter: 490120f4b53cSBarry Smith . dm - The `DM` 490244a7f3ddSMatthew G. Knepley 490344a7f3ddSMatthew G. Knepley Level: intermediate 490444a7f3ddSMatthew G. Knepley 49051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetNumFields()`, `DMSetField()` 490644a7f3ddSMatthew G. Knepley @*/ 4907d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearFields(DM dm) 4908d71ae5a4SJacob Faibussowitsch { 490944a7f3ddSMatthew G. Knepley PetscInt f; 491044a7f3ddSMatthew G. Knepley 491144a7f3ddSMatthew G. Knepley PetscFunctionBegin; 491244a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 491344a7f3ddSMatthew G. Knepley for (f = 0; f < dm->Nf; ++f) { 49149566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 49159566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 491644a7f3ddSMatthew G. Knepley } 49179566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->fields)); 491844a7f3ddSMatthew G. Knepley dm->fields = NULL; 491944a7f3ddSMatthew G. Knepley dm->Nf = 0; 49203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 492144a7f3ddSMatthew G. Knepley } 492244a7f3ddSMatthew G. Knepley 4923689b5837SMatthew G. Knepley /*@ 492420f4b53cSBarry Smith DMGetNumFields - Get the number of fields in the `DM` 4925689b5837SMatthew G. Knepley 492620f4b53cSBarry Smith Not Collective 4927689b5837SMatthew G. Knepley 4928689b5837SMatthew G. Knepley Input Parameter: 492920f4b53cSBarry Smith . dm - The `DM` 4930689b5837SMatthew G. Knepley 4931689b5837SMatthew G. Knepley Output Parameter: 493260225df5SJacob Faibussowitsch . numFields - The number of fields 4933689b5837SMatthew G. Knepley 4934689b5837SMatthew G. Knepley Level: intermediate 4935689b5837SMatthew G. Knepley 49361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetNumFields()`, `DMSetField()` 4937689b5837SMatthew G. Knepley @*/ 4938d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumFields(DM dm, PetscInt *numFields) 4939d71ae5a4SJacob Faibussowitsch { 49400f21e855SMatthew G. Knepley PetscFunctionBegin; 49410f21e855SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49424f572ea9SToby Isaac PetscAssertPointer(numFields, 2); 494344a7f3ddSMatthew G. Knepley *numFields = dm->Nf; 49443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4945af122d2aSMatthew G Knepley } 4946af122d2aSMatthew G Knepley 4947689b5837SMatthew G. Knepley /*@ 494820f4b53cSBarry Smith DMSetNumFields - Set the number of fields in the `DM` 4949689b5837SMatthew G. Knepley 495020f4b53cSBarry Smith Logically Collective 4951689b5837SMatthew G. Knepley 4952689b5837SMatthew G. Knepley Input Parameters: 495320f4b53cSBarry Smith + dm - The `DM` 495460225df5SJacob Faibussowitsch - numFields - The number of fields 4955689b5837SMatthew G. Knepley 4956689b5837SMatthew G. Knepley Level: intermediate 4957689b5837SMatthew G. Knepley 49581cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumFields()`, `DMSetField()` 4959689b5837SMatthew G. Knepley @*/ 4960d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetNumFields(DM dm, PetscInt numFields) 4961d71ae5a4SJacob Faibussowitsch { 49620f21e855SMatthew G. Knepley PetscInt Nf, f; 4963af122d2aSMatthew G Knepley 4964af122d2aSMatthew G Knepley PetscFunctionBegin; 4965af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49669566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 49670f21e855SMatthew G. Knepley for (f = Nf; f < numFields; ++f) { 49680f21e855SMatthew G. Knepley PetscContainer obj; 49690f21e855SMatthew G. Knepley 49709566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PetscObjectComm((PetscObject)dm), &obj)); 49719566063dSJacob Faibussowitsch PetscCall(DMAddField(dm, NULL, (PetscObject)obj)); 49729566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&obj)); 4973af122d2aSMatthew G Knepley } 49743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4975af122d2aSMatthew G Knepley } 4976af122d2aSMatthew G Knepley 4977c1929be8SMatthew G. Knepley /*@ 4978bb7acecfSBarry Smith DMGetField - Return the `DMLabel` and discretization object for a given `DM` field 4979c1929be8SMatthew G. Knepley 498020f4b53cSBarry Smith Not Collective 4981c1929be8SMatthew G. Knepley 4982c1929be8SMatthew G. Knepley Input Parameters: 4983bb7acecfSBarry Smith + dm - The `DM` 4984c1929be8SMatthew G. Knepley - f - The field number 4985c1929be8SMatthew G. Knepley 498644a7f3ddSMatthew G. Knepley Output Parameters: 498720f4b53cSBarry Smith + label - The label indicating the support of the field, or `NULL` for the entire mesh (pass in `NULL` if not needed) 498820f4b53cSBarry Smith - disc - The discretization object (pass in `NULL` if not needed) 4989c1929be8SMatthew G. Knepley 499044a7f3ddSMatthew G. Knepley Level: intermediate 4991c1929be8SMatthew G. Knepley 49921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()` 4993c1929be8SMatthew G. Knepley @*/ 4994d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetField(DM dm, PetscInt f, DMLabel *label, PetscObject *disc) 4995d71ae5a4SJacob Faibussowitsch { 4996af122d2aSMatthew G Knepley PetscFunctionBegin; 4997af122d2aSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 49984f572ea9SToby Isaac PetscAssertPointer(disc, 4); 49997a8be351SBarry Smith PetscCheck((f >= 0) && (f < dm->Nf), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, dm->Nf); 500044a7f3ddSMatthew G. Knepley if (label) *label = dm->fields[f].label; 5001bb7acecfSBarry Smith if (disc) *disc = dm->fields[f].disc; 50023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5003decb47aaSMatthew G. Knepley } 5004decb47aaSMatthew G. Knepley 5005083401c6SMatthew G. Knepley /* Does not clear the DS */ 5006d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField_Internal(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5007d71ae5a4SJacob Faibussowitsch { 5008083401c6SMatthew G. Knepley PetscFunctionBegin; 50099566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, f + 1)); 50109566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->fields[f].label)); 50119566063dSJacob Faibussowitsch PetscCall(PetscObjectDestroy(&dm->fields[f].disc)); 5012083401c6SMatthew G. Knepley dm->fields[f].label = label; 5013bb7acecfSBarry Smith dm->fields[f].disc = disc; 50149566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5015bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 50163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5017083401c6SMatthew G. Knepley } 5018083401c6SMatthew G. Knepley 501946560f82SMatthew G. Knepley /*@C 5020bb7acecfSBarry Smith DMSetField - Set the discretization object for a given `DM` field. Usually one would call `DMAddField()` which automatically handles 5021bb7acecfSBarry Smith the field numbering. 5022c1929be8SMatthew G. Knepley 502320f4b53cSBarry Smith Logically Collective 5024c1929be8SMatthew G. Knepley 5025c1929be8SMatthew G. Knepley Input Parameters: 5026bb7acecfSBarry Smith + dm - The `DM` 5027c1929be8SMatthew G. Knepley . f - The field number 502820f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5029bb7acecfSBarry Smith - disc - The discretization object 5030c1929be8SMatthew G. Knepley 503144a7f3ddSMatthew G. Knepley Level: intermediate 5032c1929be8SMatthew G. Knepley 50331cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMGetField()` 5034c1929be8SMatthew G. Knepley @*/ 5035d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetField(DM dm, PetscInt f, DMLabel label, PetscObject disc) 5036d71ae5a4SJacob Faibussowitsch { 5037decb47aaSMatthew G. Knepley PetscFunctionBegin; 5038decb47aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5039e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 5040bb7acecfSBarry Smith PetscValidHeader(disc, 4); 50417a8be351SBarry Smith PetscCheck(f >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be non-negative", f); 5042bb7acecfSBarry Smith PetscCall(DMSetField_Internal(dm, f, label, disc)); 5043bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, f, disc)); 50449566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504644a7f3ddSMatthew G. Knepley } 504744a7f3ddSMatthew G. Knepley 504846560f82SMatthew G. Knepley /*@C 5049bb7acecfSBarry Smith DMAddField - Add a field to a `DM` object. A field is a function space defined by of a set of discretization points (geometric entities) 5050bb7acecfSBarry Smith and a discretization object that defines the function space associated with those points. 505144a7f3ddSMatthew G. Knepley 505220f4b53cSBarry Smith Logically Collective 505344a7f3ddSMatthew G. Knepley 505444a7f3ddSMatthew G. Knepley Input Parameters: 5055bb7acecfSBarry Smith + dm - The `DM` 505620f4b53cSBarry Smith . label - The label indicating the support of the field, or `NULL` for the entire mesh 5057bb7acecfSBarry Smith - disc - The discretization object 505844a7f3ddSMatthew G. Knepley 505944a7f3ddSMatthew G. Knepley Level: intermediate 506044a7f3ddSMatthew G. Knepley 5061bb7acecfSBarry Smith Notes: 5062bb7acecfSBarry Smith The label already exists or will be added to the `DM` with `DMSetLabel()`. 5063bb7acecfSBarry Smith 5064da81f932SPierre Jolivet For example, a piecewise continuous pressure field can be defined by coefficients at the cell centers of a mesh and piecewise constant functions 5065bb7acecfSBarry Smith within each cell. Thus a specific function in the space is defined by the combination of a `Vec` containing the coefficients, a `DM` defining the 5066bb7acecfSBarry Smith geometry entities, a `DMLabel` indicating a subset of those geometric entities, and a discretization object, such as a `PetscFE`. 5067bb7acecfSBarry Smith 50681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetLabel()`, `DMSetField()`, `DMGetField()`, `PetscFE` 506944a7f3ddSMatthew G. Knepley @*/ 5070d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddField(DM dm, DMLabel label, PetscObject disc) 5071d71ae5a4SJacob Faibussowitsch { 507244a7f3ddSMatthew G. Knepley PetscInt Nf = dm->Nf; 507344a7f3ddSMatthew G. Knepley 507444a7f3ddSMatthew G. Knepley PetscFunctionBegin; 507544a7f3ddSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5076064a246eSJacob Faibussowitsch if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 5077bb7acecfSBarry Smith PetscValidHeader(disc, 3); 50789566063dSJacob Faibussowitsch PetscCall(DMFieldEnlarge_Static(dm, Nf + 1)); 507944a7f3ddSMatthew G. Knepley dm->fields[Nf].label = label; 5080bb7acecfSBarry Smith dm->fields[Nf].disc = disc; 50819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 5082bb7acecfSBarry Smith PetscCall(PetscObjectReference((PetscObject)disc)); 5083bb7acecfSBarry Smith PetscCall(DMSetDefaultAdjacency_Private(dm, Nf, disc)); 50849566063dSJacob Faibussowitsch PetscCall(DMClearDS(dm)); 50853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5086af122d2aSMatthew G Knepley } 50876636e97aSMatthew G Knepley 5088e5e52638SMatthew G. Knepley /*@ 5089e0b68406SMatthew Knepley DMSetFieldAvoidTensor - Set flag to avoid defining the field on tensor cells 5090e0b68406SMatthew Knepley 509120f4b53cSBarry Smith Logically Collective 5092e0b68406SMatthew Knepley 5093e0b68406SMatthew Knepley Input Parameters: 5094bb7acecfSBarry Smith + dm - The `DM` 5095e0b68406SMatthew Knepley . f - The field index 5096bb7acecfSBarry Smith - avoidTensor - `PETSC_TRUE` to skip defining the field on tensor cells 5097e0b68406SMatthew Knepley 5098e0b68406SMatthew Knepley Level: intermediate 5099e0b68406SMatthew Knepley 51001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFieldAvoidTensor()`, `DMSetField()`, `DMGetField()` 5101e0b68406SMatthew Knepley @*/ 5102d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFieldAvoidTensor(DM dm, PetscInt f, PetscBool avoidTensor) 5103d71ae5a4SJacob Faibussowitsch { 5104e0b68406SMatthew Knepley PetscFunctionBegin; 510563a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5106e0b68406SMatthew Knepley dm->fields[f].avoidTensor = avoidTensor; 51073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5108e0b68406SMatthew Knepley } 5109e0b68406SMatthew Knepley 5110e0b68406SMatthew Knepley /*@ 5111e0b68406SMatthew Knepley DMGetFieldAvoidTensor - Get flag to avoid defining the field on tensor cells 5112e0b68406SMatthew Knepley 511320f4b53cSBarry Smith Not Collective 5114e0b68406SMatthew Knepley 5115e0b68406SMatthew Knepley Input Parameters: 5116bb7acecfSBarry Smith + dm - The `DM` 5117e0b68406SMatthew Knepley - f - The field index 5118e0b68406SMatthew Knepley 5119e0b68406SMatthew Knepley Output Parameter: 5120e0b68406SMatthew Knepley . avoidTensor - The flag to avoid defining the field on tensor cells 5121e0b68406SMatthew Knepley 5122e0b68406SMatthew Knepley Level: intermediate 5123e0b68406SMatthew Knepley 512460225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMAddField()`, `DMSetField()`, `DMGetField()`, `DMSetFieldAvoidTensor()` 5125e0b68406SMatthew Knepley @*/ 5126d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFieldAvoidTensor(DM dm, PetscInt f, PetscBool *avoidTensor) 5127d71ae5a4SJacob Faibussowitsch { 5128e0b68406SMatthew Knepley PetscFunctionBegin; 512963a3b9bcSJacob Faibussowitsch PetscCheck((f >= 0) && (f < dm->Nf), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Field %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", f, dm->Nf); 5130e0b68406SMatthew Knepley *avoidTensor = dm->fields[f].avoidTensor; 51313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5132e0b68406SMatthew Knepley } 5133e0b68406SMatthew Knepley 5134e0b68406SMatthew Knepley /*@ 5135bb7acecfSBarry Smith DMCopyFields - Copy the discretizations for the `DM` into another `DM` 5136e5e52638SMatthew G. Knepley 513720f4b53cSBarry Smith Collective 5138e5e52638SMatthew G. Knepley 5139e5e52638SMatthew G. Knepley Input Parameter: 5140bb7acecfSBarry Smith . dm - The `DM` 5141e5e52638SMatthew G. Knepley 5142e5e52638SMatthew G. Knepley Output Parameter: 5143bb7acecfSBarry Smith . newdm - The `DM` 5144e5e52638SMatthew G. Knepley 5145e5e52638SMatthew G. Knepley Level: advanced 5146e5e52638SMatthew G. Knepley 51471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetField()`, `DMSetField()`, `DMAddField()`, `DMCopyDS()`, `DMGetDS()`, `DMGetCellDS()` 5148e5e52638SMatthew G. Knepley @*/ 5149d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyFields(DM dm, DM newdm) 5150d71ae5a4SJacob Faibussowitsch { 5151e5e52638SMatthew G. Knepley PetscInt Nf, f; 5152e5e52638SMatthew G. Knepley 5153e5e52638SMatthew G. Knepley PetscFunctionBegin; 51543ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 51559566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 51569566063dSJacob Faibussowitsch PetscCall(DMClearFields(newdm)); 5157e5e52638SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5158e5e52638SMatthew G. Knepley DMLabel label; 5159e5e52638SMatthew G. Knepley PetscObject field; 516034aa8a36SMatthew G. Knepley PetscBool useCone, useClosure; 5161e5e52638SMatthew G. Knepley 51629566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, &label, &field)); 51639566063dSJacob Faibussowitsch PetscCall(DMSetField(newdm, f, label, field)); 51649566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, f, &useCone, &useClosure)); 51659566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(newdm, f, useCone, useClosure)); 516634aa8a36SMatthew G. Knepley } 51673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 516834aa8a36SMatthew G. Knepley } 516934aa8a36SMatthew G. Knepley 517034aa8a36SMatthew G. Knepley /*@ 517134aa8a36SMatthew G. Knepley DMGetAdjacency - Returns the flags for determining variable influence 517234aa8a36SMatthew G. Knepley 517320f4b53cSBarry Smith Not Collective 517434aa8a36SMatthew G. Knepley 517534aa8a36SMatthew G. Knepley Input Parameters: 517620f4b53cSBarry Smith + dm - The `DM` object 517720f4b53cSBarry Smith - f - The field number, or `PETSC_DEFAULT` for the default adjacency 517834aa8a36SMatthew G. Knepley 5179d8d19677SJose E. Roman Output Parameters: 518034aa8a36SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 518134aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 518234aa8a36SMatthew G. Knepley 518334aa8a36SMatthew G. Knepley Level: developer 518434aa8a36SMatthew G. Knepley 518520f4b53cSBarry Smith Notes: 518620f4b53cSBarry Smith .vb 518720f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 518820f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 518920f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 519020f4b53cSBarry Smith .ve 519120f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 519220f4b53cSBarry Smith 51931cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetAdjacency()`, `DMGetField()`, `DMSetField()` 519434aa8a36SMatthew G. Knepley @*/ 5195d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAdjacency(DM dm, PetscInt f, PetscBool *useCone, PetscBool *useClosure) 5196d71ae5a4SJacob Faibussowitsch { 519734aa8a36SMatthew G. Knepley PetscFunctionBegin; 519834aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 51994f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 3); 52004f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 4); 520134aa8a36SMatthew G. Knepley if (f < 0) { 520234aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->adjacency[0]; 520334aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->adjacency[1]; 520434aa8a36SMatthew G. Knepley } else { 520534aa8a36SMatthew G. Knepley PetscInt Nf; 520634aa8a36SMatthew G. Knepley 52079566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52087a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 520934aa8a36SMatthew G. Knepley if (useCone) *useCone = dm->fields[f].adjacency[0]; 521034aa8a36SMatthew G. Knepley if (useClosure) *useClosure = dm->fields[f].adjacency[1]; 521134aa8a36SMatthew G. Knepley } 52123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521334aa8a36SMatthew G. Knepley } 521434aa8a36SMatthew G. Knepley 521534aa8a36SMatthew G. Knepley /*@ 521634aa8a36SMatthew G. Knepley DMSetAdjacency - Set the flags for determining variable influence 521734aa8a36SMatthew G. Knepley 521820f4b53cSBarry Smith Not Collective 521934aa8a36SMatthew G. Knepley 522034aa8a36SMatthew G. Knepley Input Parameters: 522120f4b53cSBarry Smith + dm - The `DM` object 522234aa8a36SMatthew G. Knepley . f - The field number 522334aa8a36SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 522434aa8a36SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 522534aa8a36SMatthew G. Knepley 522634aa8a36SMatthew G. Knepley Level: developer 522734aa8a36SMatthew G. Knepley 522820f4b53cSBarry Smith Notes: 522920f4b53cSBarry Smith .vb 523020f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 523120f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 523220f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 523320f4b53cSBarry Smith .ve 523420f4b53cSBarry Smith Further explanation can be found in the User's Manual Section on the Influence of Variables on One Another. 523520f4b53cSBarry Smith 52361cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetAdjacency()`, `DMGetField()`, `DMSetField()` 523734aa8a36SMatthew G. Knepley @*/ 5238d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAdjacency(DM dm, PetscInt f, PetscBool useCone, PetscBool useClosure) 5239d71ae5a4SJacob Faibussowitsch { 524034aa8a36SMatthew G. Knepley PetscFunctionBegin; 524134aa8a36SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 524234aa8a36SMatthew G. Knepley if (f < 0) { 524334aa8a36SMatthew G. Knepley dm->adjacency[0] = useCone; 524434aa8a36SMatthew G. Knepley dm->adjacency[1] = useClosure; 524534aa8a36SMatthew G. Knepley } else { 524634aa8a36SMatthew G. Knepley PetscInt Nf; 524734aa8a36SMatthew G. Knepley 52489566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 52497a8be351SBarry Smith PetscCheck(f < Nf, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Field number %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", f, Nf); 525034aa8a36SMatthew G. Knepley dm->fields[f].adjacency[0] = useCone; 525134aa8a36SMatthew G. Knepley dm->fields[f].adjacency[1] = useClosure; 5252e5e52638SMatthew G. Knepley } 52533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5254e5e52638SMatthew G. Knepley } 5255e5e52638SMatthew G. Knepley 5256b0441da4SMatthew G. Knepley /*@ 5257b0441da4SMatthew G. Knepley DMGetBasicAdjacency - Returns the flags for determining variable influence, using either the default or field 0 if it is defined 5258b0441da4SMatthew G. Knepley 5259b0441da4SMatthew G. Knepley Not collective 5260b0441da4SMatthew G. Knepley 5261f899ff85SJose E. Roman Input Parameter: 526220f4b53cSBarry Smith . dm - The `DM` object 5263b0441da4SMatthew G. Knepley 5264d8d19677SJose E. Roman Output Parameters: 5265b0441da4SMatthew G. Knepley + useCone - Flag for variable influence starting with the cone operation 5266b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5267b0441da4SMatthew G. Knepley 5268b0441da4SMatthew G. Knepley Level: developer 5269b0441da4SMatthew G. Knepley 527020f4b53cSBarry Smith Notes: 527120f4b53cSBarry Smith .vb 527220f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 527320f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 527420f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 527520f4b53cSBarry Smith .ve 527620f4b53cSBarry Smith 52771cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5278b0441da4SMatthew G. Knepley @*/ 5279d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetBasicAdjacency(DM dm, PetscBool *useCone, PetscBool *useClosure) 5280d71ae5a4SJacob Faibussowitsch { 5281b0441da4SMatthew G. Knepley PetscInt Nf; 5282b0441da4SMatthew G. Knepley 5283b0441da4SMatthew G. Knepley PetscFunctionBegin; 5284b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 52854f572ea9SToby Isaac if (useCone) PetscAssertPointer(useCone, 2); 52864f572ea9SToby Isaac if (useClosure) PetscAssertPointer(useClosure, 3); 52879566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5288b0441da4SMatthew G. Knepley if (!Nf) { 52899566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5290b0441da4SMatthew G. Knepley } else { 52919566063dSJacob Faibussowitsch PetscCall(DMGetAdjacency(dm, 0, useCone, useClosure)); 5292b0441da4SMatthew G. Knepley } 52933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5294b0441da4SMatthew G. Knepley } 5295b0441da4SMatthew G. Knepley 5296b0441da4SMatthew G. Knepley /*@ 5297b0441da4SMatthew G. Knepley DMSetBasicAdjacency - Set the flags for determining variable influence, using either the default or field 0 if it is defined 5298b0441da4SMatthew G. Knepley 529920f4b53cSBarry Smith Not Collective 5300b0441da4SMatthew G. Knepley 5301b0441da4SMatthew G. Knepley Input Parameters: 530220f4b53cSBarry Smith + dm - The `DM` object 5303b0441da4SMatthew G. Knepley . useCone - Flag for variable influence starting with the cone operation 5304b0441da4SMatthew G. Knepley - useClosure - Flag for variable influence using transitive closure 5305b0441da4SMatthew G. Knepley 5306b0441da4SMatthew G. Knepley Level: developer 5307b0441da4SMatthew G. Knepley 530820f4b53cSBarry Smith Notes: 530920f4b53cSBarry Smith .vb 531020f4b53cSBarry Smith FEM: Two points p and q are adjacent if q \in closure(star(p)), useCone = PETSC_FALSE, useClosure = PETSC_TRUE 531120f4b53cSBarry Smith FVM: Two points p and q are adjacent if q \in support(p+cone(p)), useCone = PETSC_TRUE, useClosure = PETSC_FALSE 531220f4b53cSBarry Smith FVM++: Two points p and q are adjacent if q \in star(closure(p)), useCone = PETSC_TRUE, useClosure = PETSC_TRUE 531320f4b53cSBarry Smith .ve 531420f4b53cSBarry Smith 53151cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetBasicAdjacency()`, `DMGetField()`, `DMSetField()` 5316b0441da4SMatthew G. Knepley @*/ 5317d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetBasicAdjacency(DM dm, PetscBool useCone, PetscBool useClosure) 5318d71ae5a4SJacob Faibussowitsch { 5319b0441da4SMatthew G. Knepley PetscInt Nf; 5320b0441da4SMatthew G. Knepley 5321b0441da4SMatthew G. Knepley PetscFunctionBegin; 5322b0441da4SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 53239566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 5324b0441da4SMatthew G. Knepley if (!Nf) { 53259566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, PETSC_DEFAULT, useCone, useClosure)); 5326b0441da4SMatthew G. Knepley } else { 53279566063dSJacob Faibussowitsch PetscCall(DMSetAdjacency(dm, 0, useCone, useClosure)); 5328e5e52638SMatthew G. Knepley } 53293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5330e5e52638SMatthew G. Knepley } 5331e5e52638SMatthew G. Knepley 5332d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompleteBCLabels_Internal(DM dm) 5333d71ae5a4SJacob Faibussowitsch { 5334799db056SMatthew G. Knepley DM plex; 5335799db056SMatthew G. Knepley DMLabel *labels, *glabels; 5336799db056SMatthew G. Knepley const char **names; 5337799db056SMatthew G. Knepley char *sendNames, *recvNames; 5338799db056SMatthew G. Knepley PetscInt Nds, s, maxLabels = 0, maxLen = 0, gmaxLen, Nl = 0, gNl, l, gl, m; 5339799db056SMatthew G. Knepley size_t len; 5340799db056SMatthew G. Knepley MPI_Comm comm; 5341799db056SMatthew G. Knepley PetscMPIInt rank, size, p, *counts, *displs; 5342783e2ec8SMatthew G. Knepley 5343783e2ec8SMatthew G. Knepley PetscFunctionBegin; 5344799db056SMatthew G. Knepley PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 5345799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_size(comm, &size)); 5346799db056SMatthew G. Knepley PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5347799db056SMatthew G. Knepley PetscCall(DMGetNumDS(dm, &Nds)); 5348799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5349799db056SMatthew G. Knepley PetscDS dsBC; 5350799db056SMatthew G. Knepley PetscInt numBd; 5351799db056SMatthew G. Knepley 535207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5353799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5354799db056SMatthew G. Knepley maxLabels += numBd; 5355799db056SMatthew G. Knepley } 5356799db056SMatthew G. Knepley PetscCall(PetscCalloc1(maxLabels, &labels)); 5357799db056SMatthew G. Knepley /* Get list of labels to be completed */ 5358799db056SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5359799db056SMatthew G. Knepley PetscDS dsBC; 5360799db056SMatthew G. Knepley PetscInt numBd, bd; 5361799db056SMatthew G. Knepley 536207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, NULL, NULL, &dsBC, NULL)); 5363799db056SMatthew G. Knepley PetscCall(PetscDSGetNumBoundary(dsBC, &numBd)); 5364799db056SMatthew G. Knepley for (bd = 0; bd < numBd; ++bd) { 5365799db056SMatthew G. Knepley DMLabel label; 5366799db056SMatthew G. Knepley PetscInt field; 5367799db056SMatthew G. Knepley PetscObject obj; 5368799db056SMatthew G. Knepley PetscClassId id; 5369799db056SMatthew G. Knepley 5370799db056SMatthew G. Knepley PetscCall(PetscDSGetBoundary(dsBC, bd, NULL, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 53719566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, field, NULL, &obj)); 53729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(obj, &id)); 5373799db056SMatthew G. Knepley if (!(id == PETSCFE_CLASSID) || !label) continue; 53749371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 53759371c9d4SSatish Balay if (labels[l] == label) break; 5376799db056SMatthew G. Knepley if (l == Nl) labels[Nl++] = label; 5377783e2ec8SMatthew G. Knepley } 5378799db056SMatthew G. Knepley } 5379799db056SMatthew G. Knepley /* Get label names */ 5380799db056SMatthew G. Knepley PetscCall(PetscMalloc1(Nl, &names)); 5381799db056SMatthew G. Knepley for (l = 0; l < Nl; ++l) PetscCall(PetscObjectGetName((PetscObject)labels[l], &names[l])); 53829371c9d4SSatish Balay for (l = 0; l < Nl; ++l) { 53839371c9d4SSatish Balay PetscCall(PetscStrlen(names[l], &len)); 53849371c9d4SSatish Balay maxLen = PetscMax(maxLen, (PetscInt)len + 2); 53859371c9d4SSatish Balay } 5386799db056SMatthew G. Knepley PetscCall(PetscFree(labels)); 5387712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&maxLen, &gmaxLen, 1, MPIU_INT, MPI_MAX, comm)); 5388799db056SMatthew G. Knepley PetscCall(PetscCalloc1(Nl * gmaxLen, &sendNames)); 5389c6a7a370SJeremy L Thompson for (l = 0; l < Nl; ++l) PetscCall(PetscStrncpy(&sendNames[gmaxLen * l], names[l], gmaxLen)); 5390799db056SMatthew G. Knepley PetscCall(PetscFree(names)); 5391799db056SMatthew G. Knepley /* Put all names on all processes */ 5392799db056SMatthew G. Knepley PetscCall(PetscCalloc2(size, &counts, size + 1, &displs)); 5393799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgather(&Nl, 1, MPI_INT, counts, 1, MPI_INT, comm)); 5394799db056SMatthew G. Knepley for (p = 0; p < size; ++p) displs[p + 1] = displs[p] + counts[p]; 5395799db056SMatthew G. Knepley gNl = displs[size]; 53969371c9d4SSatish Balay for (p = 0; p < size; ++p) { 53979371c9d4SSatish Balay counts[p] *= gmaxLen; 53989371c9d4SSatish Balay displs[p] *= gmaxLen; 53999371c9d4SSatish Balay } 5400799db056SMatthew G. Knepley PetscCall(PetscCalloc2(gNl * gmaxLen, &recvNames, gNl, &glabels)); 5401799db056SMatthew G. Knepley PetscCallMPI(MPI_Allgatherv(sendNames, counts[rank], MPI_CHAR, recvNames, counts, displs, MPI_CHAR, comm)); 5402799db056SMatthew G. Knepley PetscCall(PetscFree2(counts, displs)); 5403799db056SMatthew G. Knepley PetscCall(PetscFree(sendNames)); 5404799db056SMatthew G. Knepley for (l = 0, gl = 0; l < gNl; ++l) { 5405799db056SMatthew G. Knepley PetscCall(DMGetLabel(dm, &recvNames[l * gmaxLen], &glabels[gl])); 5406799db056SMatthew G. Knepley PetscCheck(glabels[gl], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Label %s missing on rank %d", &recvNames[l * gmaxLen], rank); 54079371c9d4SSatish Balay for (m = 0; m < gl; ++m) 54089371c9d4SSatish Balay if (glabels[m] == glabels[gl]) continue; 54099566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 5410799db056SMatthew G. Knepley PetscCall(DMPlexLabelComplete(plex, glabels[gl])); 54119566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5412799db056SMatthew G. Knepley ++gl; 5413783e2ec8SMatthew G. Knepley } 5414799db056SMatthew G. Knepley PetscCall(PetscFree2(recvNames, glabels)); 54153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5416783e2ec8SMatthew G. Knepley } 5417783e2ec8SMatthew G. Knepley 5418d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMDSEnlarge_Static(DM dm, PetscInt NdsNew) 5419d71ae5a4SJacob Faibussowitsch { 5420e5e52638SMatthew G. Knepley DMSpace *tmpd; 5421e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5422e5e52638SMatthew G. Knepley 5423e5e52638SMatthew G. Knepley PetscFunctionBegin; 54243ba16761SJacob Faibussowitsch if (Nds >= NdsNew) PetscFunctionReturn(PETSC_SUCCESS); 54259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(NdsNew, &tmpd)); 5426e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) tmpd[s] = dm->probs[s]; 54279371c9d4SSatish Balay for (s = Nds; s < NdsNew; ++s) { 54289371c9d4SSatish Balay tmpd[s].ds = NULL; 54299371c9d4SSatish Balay tmpd[s].label = NULL; 54309371c9d4SSatish Balay tmpd[s].fields = NULL; 54319371c9d4SSatish Balay } 54329566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5433e5e52638SMatthew G. Knepley dm->Nds = NdsNew; 5434e5e52638SMatthew G. Knepley dm->probs = tmpd; 54353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5436e5e52638SMatthew G. Knepley } 5437e5e52638SMatthew G. Knepley 5438e5e52638SMatthew G. Knepley /*@ 543920f4b53cSBarry Smith DMGetNumDS - Get the number of discrete systems in the `DM` 5440e5e52638SMatthew G. Knepley 544120f4b53cSBarry Smith Not Collective 5442e5e52638SMatthew G. Knepley 5443e5e52638SMatthew G. Knepley Input Parameter: 544420f4b53cSBarry Smith . dm - The `DM` 5445e5e52638SMatthew G. Knepley 5446e5e52638SMatthew G. Knepley Output Parameter: 544720f4b53cSBarry Smith . Nds - The number of `PetscDS` objects 5448e5e52638SMatthew G. Knepley 5449e5e52638SMatthew G. Knepley Level: intermediate 5450e5e52638SMatthew G. Knepley 54511cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMGetCellDS()` 5452e5e52638SMatthew G. Knepley @*/ 5453d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumDS(DM dm, PetscInt *Nds) 5454d71ae5a4SJacob Faibussowitsch { 5455e5e52638SMatthew G. Knepley PetscFunctionBegin; 5456e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 54574f572ea9SToby Isaac PetscAssertPointer(Nds, 2); 5458e5e52638SMatthew G. Knepley *Nds = dm->Nds; 54593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5460e5e52638SMatthew G. Knepley } 5461e5e52638SMatthew G. Knepley 5462e5e52638SMatthew G. Knepley /*@ 546320f4b53cSBarry Smith DMClearDS - Remove all discrete systems from the `DM` 5464e5e52638SMatthew G. Knepley 546520f4b53cSBarry Smith Logically Collective 5466e5e52638SMatthew G. Knepley 5467e5e52638SMatthew G. Knepley Input Parameter: 546820f4b53cSBarry Smith . dm - The `DM` 5469e5e52638SMatthew G. Knepley 5470e5e52638SMatthew G. Knepley Level: intermediate 5471e5e52638SMatthew G. Knepley 54721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetNumDS()`, `DMGetDS()`, `DMSetField()` 5473e5e52638SMatthew G. Knepley @*/ 5474d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearDS(DM dm) 5475d71ae5a4SJacob Faibussowitsch { 5476e5e52638SMatthew G. Knepley PetscInt s; 5477e5e52638SMatthew G. Knepley 5478e5e52638SMatthew G. Knepley PetscFunctionBegin; 5479e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5480e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 54819566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 548207218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 54839566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[s].label)); 54849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[s].fields)); 5485e5e52638SMatthew G. Knepley } 54869566063dSJacob Faibussowitsch PetscCall(PetscFree(dm->probs)); 5487e5e52638SMatthew G. Knepley dm->probs = NULL; 5488e5e52638SMatthew G. Knepley dm->Nds = 0; 54893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5490e5e52638SMatthew G. Knepley } 5491e5e52638SMatthew G. Knepley 5492e5e52638SMatthew G. Knepley /*@ 549320f4b53cSBarry Smith DMGetDS - Get the default `PetscDS` 5494e5e52638SMatthew G. Knepley 549520f4b53cSBarry Smith Not Collective 5496e5e52638SMatthew G. Knepley 5497e5e52638SMatthew G. Knepley Input Parameter: 549820f4b53cSBarry Smith . dm - The `DM` 5499e5e52638SMatthew G. Knepley 5500e5e52638SMatthew G. Knepley Output Parameter: 550107218a29SMatthew G. Knepley . ds - The default `PetscDS` 5502e5e52638SMatthew G. Knepley 5503e5e52638SMatthew G. Knepley Level: intermediate 5504e5e52638SMatthew G. Knepley 55051cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCellDS()`, `DMGetRegionDS()` 5506e5e52638SMatthew G. Knepley @*/ 550707218a29SMatthew G. Knepley PetscErrorCode DMGetDS(DM dm, PetscDS *ds) 5508d71ae5a4SJacob Faibussowitsch { 5509e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5510e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55114f572ea9SToby Isaac PetscAssertPointer(ds, 2); 551207218a29SMatthew G. Knepley PetscCheck(dm->Nds > 0, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Need to call DMCreateDS() before calling DMGetDS()"); 551307218a29SMatthew G. Knepley *ds = dm->probs[0].ds; 55143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5515e5e52638SMatthew G. Knepley } 5516e5e52638SMatthew G. Knepley 5517e5e52638SMatthew G. Knepley /*@ 551820f4b53cSBarry Smith DMGetCellDS - Get the `PetscDS` defined on a given cell 5519e5e52638SMatthew G. Knepley 552020f4b53cSBarry Smith Not Collective 5521e5e52638SMatthew G. Knepley 5522e5e52638SMatthew G. Knepley Input Parameters: 552320f4b53cSBarry Smith + dm - The `DM` 552420f4b53cSBarry Smith - point - Cell for the `PetscDS` 5525e5e52638SMatthew G. Knepley 552607218a29SMatthew G. Knepley Output Parameters: 552707218a29SMatthew G. Knepley + ds - The `PetscDS` defined on the given cell 552807218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or NULL if the same ds 5529e5e52638SMatthew G. Knepley 5530e5e52638SMatthew G. Knepley Level: developer 5531e5e52638SMatthew G. Knepley 55321cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDS()`, `DMSetRegionDS()` 5533e5e52638SMatthew G. Knepley @*/ 553407218a29SMatthew G. Knepley PetscErrorCode DMGetCellDS(DM dm, PetscInt point, PetscDS *ds, PetscDS *dsIn) 5535d71ae5a4SJacob Faibussowitsch { 553607218a29SMatthew G. Knepley PetscDS dsDef = NULL; 5537e5e52638SMatthew G. Knepley PetscInt s; 5538e5e52638SMatthew G. Knepley 5539e5e52638SMatthew G. Knepley PetscFunctionBeginHot; 5540e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 55414f572ea9SToby Isaac if (ds) PetscAssertPointer(ds, 3); 55424f572ea9SToby Isaac if (dsIn) PetscAssertPointer(dsIn, 4); 554363a3b9bcSJacob Faibussowitsch PetscCheck(point >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Mesh point cannot be negative: %" PetscInt_FMT, point); 554407218a29SMatthew G. Knepley if (ds) *ds = NULL; 554507218a29SMatthew G. Knepley if (dsIn) *dsIn = NULL; 5546e5e52638SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 5547e5e52638SMatthew G. Knepley PetscInt val; 5548e5e52638SMatthew G. Knepley 55499371c9d4SSatish Balay if (!dm->probs[s].label) { 555007218a29SMatthew G. Knepley dsDef = dm->probs[s].ds; 55519371c9d4SSatish Balay } else { 55529566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(dm->probs[s].label, point, &val)); 55539371c9d4SSatish Balay if (val >= 0) { 555407218a29SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 555507218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 55569371c9d4SSatish Balay break; 55579371c9d4SSatish Balay } 5558e5e52638SMatthew G. Knepley } 5559e5e52638SMatthew G. Knepley } 556007218a29SMatthew G. Knepley if (ds && !*ds) *ds = dsDef; 55613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5562e5e52638SMatthew G. Knepley } 5563e5e52638SMatthew G. Knepley 5564e5e52638SMatthew G. Knepley /*@ 556520f4b53cSBarry Smith DMGetRegionDS - Get the `PetscDS` for a given mesh region, defined by a `DMLabel` 5566e5e52638SMatthew G. Knepley 556720f4b53cSBarry Smith Not Collective 5568e5e52638SMatthew G. Knepley 5569e5e52638SMatthew G. Knepley Input Parameters: 557020f4b53cSBarry Smith + dm - The `DM` 557120f4b53cSBarry Smith - label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 5572e5e52638SMatthew G. Knepley 5573b3cf3223SMatthew G. Knepley Output Parameters: 557420f4b53cSBarry Smith + fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 557507218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 557607218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5577e5e52638SMatthew G. Knepley 5578e5e52638SMatthew G. Knepley Level: advanced 5579e5e52638SMatthew G. Knepley 558020f4b53cSBarry Smith Note: 558120f4b53cSBarry Smith If a non-`NULL` label is given, but there is no `PetscDS` on that specific label, 558220f4b53cSBarry Smith the `PetscDS` for the full domain (if present) is returned. Returns with 558307218a29SMatthew G. Knepley fields = `NULL` and ds = `NULL` if there is no `PetscDS` for the full domain. 558420f4b53cSBarry Smith 55851cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5586e5e52638SMatthew G. Knepley @*/ 558707218a29SMatthew G. Knepley PetscErrorCode DMGetRegionDS(DM dm, DMLabel label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5588d71ae5a4SJacob Faibussowitsch { 5589e5e52638SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5590e5e52638SMatthew G. Knepley 5591e5e52638SMatthew G. Knepley PetscFunctionBegin; 5592e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5593e5e52638SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 55949371c9d4SSatish Balay if (fields) { 55954f572ea9SToby Isaac PetscAssertPointer(fields, 3); 55969371c9d4SSatish Balay *fields = NULL; 55979371c9d4SSatish Balay } 55989371c9d4SSatish Balay if (ds) { 55994f572ea9SToby Isaac PetscAssertPointer(ds, 4); 56009371c9d4SSatish Balay *ds = NULL; 56019371c9d4SSatish Balay } 560207218a29SMatthew G. Knepley if (dsIn) { 56034f572ea9SToby Isaac PetscAssertPointer(dsIn, 5); 560407218a29SMatthew G. Knepley *dsIn = NULL; 560507218a29SMatthew G. Knepley } 5606e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5607154ca461SJed Brown if (dm->probs[s].label == label || !dm->probs[s].label) { 5608b3cf3223SMatthew G. Knepley if (fields) *fields = dm->probs[s].fields; 5609b3cf3223SMatthew G. Knepley if (ds) *ds = dm->probs[s].ds; 561007218a29SMatthew G. Knepley if (dsIn) *dsIn = dm->probs[s].dsIn; 56113ba16761SJacob Faibussowitsch if (dm->probs[s].label) PetscFunctionReturn(PETSC_SUCCESS); 5612b3cf3223SMatthew G. Knepley } 5613e5e52638SMatthew G. Knepley } 56143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5615e5e52638SMatthew G. Knepley } 5616e5e52638SMatthew G. Knepley 5617e5e52638SMatthew G. Knepley /*@ 5618bb7acecfSBarry Smith DMSetRegionDS - Set the `PetscDS` for a given mesh region, defined by a `DMLabel` 5619083401c6SMatthew G. Knepley 562020f4b53cSBarry Smith Collective 5621083401c6SMatthew G. Knepley 5622083401c6SMatthew G. Knepley Input Parameters: 5623bb7acecfSBarry Smith + dm - The `DM` 562420f4b53cSBarry Smith . label - The `DMLabel` defining the mesh region, or `NULL` for the entire mesh 562507218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` for all fields 562607218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region 562707218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5628083401c6SMatthew G. Knepley 562920f4b53cSBarry Smith Level: advanced 563020f4b53cSBarry Smith 5631bb7acecfSBarry Smith Note: 5632bb7acecfSBarry Smith If the label has a `PetscDS` defined, it will be replaced. Otherwise, it will be added to the `DM`. If the `PetscDS` is replaced, 5633083401c6SMatthew G. Knepley the fields argument is ignored. 5634083401c6SMatthew G. Knepley 56351cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionNumDS()`, `DMGetDS()`, `DMGetCellDS()` 5636083401c6SMatthew G. Knepley @*/ 563707218a29SMatthew G. Knepley PetscErrorCode DMSetRegionDS(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5638d71ae5a4SJacob Faibussowitsch { 5639083401c6SMatthew G. Knepley PetscInt Nds = dm->Nds, s; 5640083401c6SMatthew G. Knepley 5641083401c6SMatthew G. Knepley PetscFunctionBegin; 5642083401c6SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5643083401c6SMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 564407218a29SMatthew G. Knepley if (fields) PetscValidHeaderSpecific(fields, IS_CLASSID, 3); 5645064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 4); 564607218a29SMatthew G. Knepley if (dsIn) PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 5); 5647083401c6SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 5648083401c6SMatthew G. Knepley if (dm->probs[s].label == label) { 56499566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[s].ds)); 565007218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[s].dsIn)); 5651083401c6SMatthew G. Knepley dm->probs[s].ds = ds; 565207218a29SMatthew G. Knepley dm->probs[s].dsIn = dsIn; 56533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5654083401c6SMatthew G. Knepley } 5655083401c6SMatthew G. Knepley } 56569566063dSJacob Faibussowitsch PetscCall(DMDSEnlarge_Static(dm, Nds + 1)); 56579566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 56589566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 56599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 566007218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 5661083401c6SMatthew G. Knepley if (!label) { 5662083401c6SMatthew G. Knepley /* Put the NULL label at the front, so it is returned as the default */ 5663083401c6SMatthew G. Knepley for (s = Nds - 1; s >= 0; --s) dm->probs[s + 1] = dm->probs[s]; 5664083401c6SMatthew G. Knepley Nds = 0; 5665083401c6SMatthew G. Knepley } 5666083401c6SMatthew G. Knepley dm->probs[Nds].label = label; 5667083401c6SMatthew G. Knepley dm->probs[Nds].fields = fields; 5668083401c6SMatthew G. Knepley dm->probs[Nds].ds = ds; 566907218a29SMatthew G. Knepley dm->probs[Nds].dsIn = dsIn; 56703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5671083401c6SMatthew G. Knepley } 5672083401c6SMatthew G. Knepley 5673083401c6SMatthew G. Knepley /*@ 567420f4b53cSBarry Smith DMGetRegionNumDS - Get the `PetscDS` for a given mesh region, defined by the region number 5675e5e52638SMatthew G. Knepley 567620f4b53cSBarry Smith Not Collective 5677e5e52638SMatthew G. Knepley 5678e5e52638SMatthew G. Knepley Input Parameters: 567920f4b53cSBarry Smith + dm - The `DM` 5680e5e52638SMatthew G. Knepley - num - The region number, in [0, Nds) 5681e5e52638SMatthew G. Knepley 5682e5e52638SMatthew G. Knepley Output Parameters: 568320f4b53cSBarry Smith + label - The region label, or `NULL` 568420f4b53cSBarry Smith . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` 568507218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` 568607218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input in the given region, or `NULL` 5687e5e52638SMatthew G. Knepley 5688e5e52638SMatthew G. Knepley Level: advanced 5689e5e52638SMatthew G. Knepley 56901cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5691e5e52638SMatthew G. Knepley @*/ 569207218a29SMatthew G. Knepley PetscErrorCode DMGetRegionNumDS(DM dm, PetscInt num, DMLabel *label, IS *fields, PetscDS *ds, PetscDS *dsIn) 5693d71ae5a4SJacob Faibussowitsch { 5694e5e52638SMatthew G. Knepley PetscInt Nds; 5695e5e52638SMatthew G. Knepley 5696e5e52638SMatthew G. Knepley PetscFunctionBegin; 5697e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 56989566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 569963a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 5700e5e52638SMatthew G. Knepley if (label) { 57014f572ea9SToby Isaac PetscAssertPointer(label, 3); 5702e5e52638SMatthew G. Knepley *label = dm->probs[num].label; 5703e5e52638SMatthew G. Knepley } 5704b3cf3223SMatthew G. Knepley if (fields) { 57054f572ea9SToby Isaac PetscAssertPointer(fields, 4); 5706b3cf3223SMatthew G. Knepley *fields = dm->probs[num].fields; 5707b3cf3223SMatthew G. Knepley } 5708e5e52638SMatthew G. Knepley if (ds) { 57094f572ea9SToby Isaac PetscAssertPointer(ds, 5); 5710e5e52638SMatthew G. Knepley *ds = dm->probs[num].ds; 5711e5e52638SMatthew G. Knepley } 571207218a29SMatthew G. Knepley if (dsIn) { 57134f572ea9SToby Isaac PetscAssertPointer(dsIn, 6); 571407218a29SMatthew G. Knepley *dsIn = dm->probs[num].dsIn; 571507218a29SMatthew G. Knepley } 57163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5717e5e52638SMatthew G. Knepley } 5718e5e52638SMatthew G. Knepley 5719e5e52638SMatthew G. Knepley /*@ 572020f4b53cSBarry Smith DMSetRegionNumDS - Set the `PetscDS` for a given mesh region, defined by the region number 5721e5e52638SMatthew G. Knepley 572220f4b53cSBarry Smith Not Collective 5723e5e52638SMatthew G. Knepley 5724e5e52638SMatthew G. Knepley Input Parameters: 572520f4b53cSBarry Smith + dm - The `DM` 5726083401c6SMatthew G. Knepley . num - The region number, in [0, Nds) 572720f4b53cSBarry Smith . label - The region label, or `NULL` 572807218a29SMatthew G. Knepley . fields - The `IS` containing the `DM` field numbers for the fields in this `PetscDS`, or `NULL` to prevent setting 572907218a29SMatthew G. Knepley . ds - The `PetscDS` defined on the given region, or `NULL` to prevent setting 573007218a29SMatthew G. Knepley - dsIn - The `PetscDS` for input on the given cell, or `NULL` if it is the same `PetscDS` 5731e5e52638SMatthew G. Knepley 5732e5e52638SMatthew G. Knepley Level: advanced 5733e5e52638SMatthew G. Knepley 57341cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 5735e5e52638SMatthew G. Knepley @*/ 573607218a29SMatthew G. Knepley PetscErrorCode DMSetRegionNumDS(DM dm, PetscInt num, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 5737d71ae5a4SJacob Faibussowitsch { 5738083401c6SMatthew G. Knepley PetscInt Nds; 5739e5e52638SMatthew G. Knepley 5740e5e52638SMatthew G. Knepley PetscFunctionBegin; 5741e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 5742ad540459SPierre Jolivet if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 3); 57439566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 574463a3b9bcSJacob Faibussowitsch PetscCheck((num >= 0) && (num < Nds), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Region number %" PetscInt_FMT " is not in [0, %" PetscInt_FMT ")", num, Nds); 57459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 57469566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&dm->probs[num].label)); 5747083401c6SMatthew G. Knepley dm->probs[num].label = label; 5748083401c6SMatthew G. Knepley if (fields) { 5749083401c6SMatthew G. Knepley PetscValidHeaderSpecific(fields, IS_CLASSID, 4); 57509566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fields)); 57519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dm->probs[num].fields)); 5752083401c6SMatthew G. Knepley dm->probs[num].fields = fields; 5753e5e52638SMatthew G. Knepley } 5754083401c6SMatthew G. Knepley if (ds) { 5755083401c6SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 5); 57569566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)ds)); 57579566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dm->probs[num].ds)); 5758083401c6SMatthew G. Knepley dm->probs[num].ds = ds; 5759083401c6SMatthew G. Knepley } 576007218a29SMatthew G. Knepley if (dsIn) { 576107218a29SMatthew G. Knepley PetscValidHeaderSpecific(dsIn, PETSCDS_CLASSID, 6); 576207218a29SMatthew G. Knepley PetscCall(PetscObjectReference((PetscObject)dsIn)); 576307218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dm->probs[num].dsIn)); 576407218a29SMatthew G. Knepley dm->probs[num].dsIn = dsIn; 576507218a29SMatthew G. Knepley } 57663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5767e5e52638SMatthew G. Knepley } 5768e5e52638SMatthew G. Knepley 5769e5e52638SMatthew G. Knepley /*@ 577020f4b53cSBarry Smith DMFindRegionNum - Find the region number for a given `PetscDS`, or -1 if it is not found. 57711d3af9e0SMatthew G. Knepley 577220f4b53cSBarry Smith Not Collective 57731d3af9e0SMatthew G. Knepley 57741d3af9e0SMatthew G. Knepley Input Parameters: 577520f4b53cSBarry Smith + dm - The `DM` 577620f4b53cSBarry Smith - ds - The `PetscDS` defined on the given region 57771d3af9e0SMatthew G. Knepley 57781d3af9e0SMatthew G. Knepley Output Parameter: 57791d3af9e0SMatthew G. Knepley . num - The region number, in [0, Nds), or -1 if not found 57801d3af9e0SMatthew G. Knepley 57811d3af9e0SMatthew G. Knepley Level: advanced 57821d3af9e0SMatthew G. Knepley 57831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetRegionNumDS()`, `DMGetRegionDS()`, `DMSetRegionDS()`, `DMGetDS()`, `DMGetCellDS()` 57841d3af9e0SMatthew G. Knepley @*/ 5785d71ae5a4SJacob Faibussowitsch PetscErrorCode DMFindRegionNum(DM dm, PetscDS ds, PetscInt *num) 5786d71ae5a4SJacob Faibussowitsch { 57871d3af9e0SMatthew G. Knepley PetscInt Nds, n; 57881d3af9e0SMatthew G. Knepley 57891d3af9e0SMatthew G. Knepley PetscFunctionBegin; 57901d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 57911d3af9e0SMatthew G. Knepley PetscValidHeaderSpecific(ds, PETSCDS_CLASSID, 2); 57924f572ea9SToby Isaac PetscAssertPointer(num, 3); 57939566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 57949371c9d4SSatish Balay for (n = 0; n < Nds; ++n) 57959371c9d4SSatish Balay if (ds == dm->probs[n].ds) break; 57961d3af9e0SMatthew G. Knepley if (n >= Nds) *num = -1; 57971d3af9e0SMatthew G. Knepley else *num = n; 57983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57991d3af9e0SMatthew G. Knepley } 58001d3af9e0SMatthew G. Knepley 58012df84da0SMatthew G. Knepley /*@C 5802bb7acecfSBarry Smith DMCreateFEDefault - Create a `PetscFE` based on the celltype for the mesh 58032df84da0SMatthew G. Knepley 580420f4b53cSBarry Smith Not Collective 58052df84da0SMatthew G. Knepley 5806f1a722f8SMatthew G. Knepley Input Parameters: 5807bb7acecfSBarry Smith + dm - The `DM` 58082df84da0SMatthew G. Knepley . Nc - The number of components for the field 580920f4b53cSBarry Smith . prefix - The options prefix for the output `PetscFE`, or `NULL` 5810bb7acecfSBarry Smith - qorder - The quadrature order or `PETSC_DETERMINE` to use `PetscSpace` polynomial degree 58112df84da0SMatthew G. Knepley 58122df84da0SMatthew G. Knepley Output Parameter: 5813bb7acecfSBarry Smith . fem - The `PetscFE` 58142df84da0SMatthew G. Knepley 581520f4b53cSBarry Smith Level: intermediate 581620f4b53cSBarry Smith 5817bb7acecfSBarry Smith Note: 5818bb7acecfSBarry Smith This is a convenience method that just calls `PetscFECreateByCell()` underneath. 58192df84da0SMatthew G. Knepley 58201cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscFECreateByCell()`, `DMAddField()`, `DMCreateDS()`, `DMGetCellDS()`, `DMGetRegionDS()` 58212df84da0SMatthew G. Knepley @*/ 5822d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateFEDefault(DM dm, PetscInt Nc, const char prefix[], PetscInt qorder, PetscFE *fem) 5823d71ae5a4SJacob Faibussowitsch { 58242df84da0SMatthew G. Knepley DMPolytopeType ct; 58252df84da0SMatthew G. Knepley PetscInt dim, cStart; 58262df84da0SMatthew G. Knepley 58272df84da0SMatthew G. Knepley PetscFunctionBegin; 58282df84da0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58292df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 2); 58304f572ea9SToby Isaac if (prefix) PetscAssertPointer(prefix, 3); 58312df84da0SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, qorder, 4); 58324f572ea9SToby Isaac PetscAssertPointer(fem, 5); 58339566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &dim)); 58349566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 58359566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 58369566063dSJacob Faibussowitsch PetscCall(PetscFECreateByCell(PETSC_COMM_SELF, dim, Nc, ct, prefix, qorder, fem)); 58373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58382df84da0SMatthew G. Knepley } 58392df84da0SMatthew G. Knepley 58401d3af9e0SMatthew G. Knepley /*@ 5841bb7acecfSBarry Smith DMCreateDS - Create the discrete systems for the `DM` based upon the fields added to the `DM` 5842e5e52638SMatthew G. Knepley 584320f4b53cSBarry Smith Collective 5844e5e52638SMatthew G. Knepley 5845e5e52638SMatthew G. Knepley Input Parameter: 5846bb7acecfSBarry Smith . dm - The `DM` 5847e5e52638SMatthew G. Knepley 584820f4b53cSBarry Smith Options Database Key: 5849bb7acecfSBarry Smith . -dm_petscds_view - View all the `PetscDS` objects in this `DM` 585045480ffeSMatthew G. Knepley 585120f4b53cSBarry Smith Level: intermediate 585220f4b53cSBarry Smith 58531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetField`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 5854e5e52638SMatthew G. Knepley @*/ 5855d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateDS(DM dm) 5856d71ae5a4SJacob Faibussowitsch { 5857e5e52638SMatthew G. Knepley MPI_Comm comm; 5858083401c6SMatthew G. Knepley PetscDS dsDef; 5859083401c6SMatthew G. Knepley DMLabel *labelSet; 5860f9244615SMatthew G. Knepley PetscInt dE, Nf = dm->Nf, f, s, Nl, l, Ndef, k; 5861f9244615SMatthew G. Knepley PetscBool doSetup = PETSC_TRUE, flg; 5862e5e52638SMatthew G. Knepley 5863e5e52638SMatthew G. Knepley PetscFunctionBegin; 5864e5e52638SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 58653ba16761SJacob Faibussowitsch if (!dm->fields) PetscFunctionReturn(PETSC_SUCCESS); 58669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm, &comm)); 58679566063dSJacob Faibussowitsch PetscCall(DMGetCoordinateDim(dm, &dE)); 5868083401c6SMatthew G. Knepley /* Determine how many regions we have */ 58699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nf, &labelSet)); 5870083401c6SMatthew G. Knepley Nl = 0; 5871083401c6SMatthew G. Knepley Ndef = 0; 5872083401c6SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 5873083401c6SMatthew G. Knepley DMLabel label = dm->fields[f].label; 5874083401c6SMatthew G. Knepley PetscInt l; 5875083401c6SMatthew G. Knepley 5876f918ec44SMatthew G. Knepley #ifdef PETSC_HAVE_LIBCEED 5877f918ec44SMatthew G. Knepley /* Move CEED context to discretizations */ 5878f918ec44SMatthew G. Knepley { 5879f918ec44SMatthew G. Knepley PetscClassId id; 5880f918ec44SMatthew G. Knepley 58819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(dm->fields[f].disc, &id)); 5882f918ec44SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 5883f918ec44SMatthew G. Knepley Ceed ceed; 5884f918ec44SMatthew G. Knepley 58859566063dSJacob Faibussowitsch PetscCall(DMGetCeed(dm, &ceed)); 58869566063dSJacob Faibussowitsch PetscCall(PetscFESetCeed((PetscFE)dm->fields[f].disc, ceed)); 5887f918ec44SMatthew G. Knepley } 5888f918ec44SMatthew G. Knepley } 5889f918ec44SMatthew G. Knepley #endif 58909371c9d4SSatish Balay if (!label) { 58919371c9d4SSatish Balay ++Ndef; 58929371c9d4SSatish Balay continue; 58939371c9d4SSatish Balay } 58949371c9d4SSatish Balay for (l = 0; l < Nl; ++l) 58959371c9d4SSatish Balay if (label == labelSet[l]) break; 5896083401c6SMatthew G. Knepley if (l < Nl) continue; 5897083401c6SMatthew G. Knepley labelSet[Nl++] = label; 5898083401c6SMatthew G. Knepley } 5899083401c6SMatthew G. Knepley /* Create default DS if there are no labels to intersect with */ 590007218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 5901083401c6SMatthew G. Knepley if (!dsDef && Ndef && !Nl) { 5902b3cf3223SMatthew G. Knepley IS fields; 5903b3cf3223SMatthew G. Knepley PetscInt *fld, nf; 5904b3cf3223SMatthew G. Knepley 59059371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59069371c9d4SSatish Balay if (!dm->fields[f].label) ++nf; 59077a8be351SBarry Smith PetscCheck(nf, comm, PETSC_ERR_PLIB, "All fields have labels, but we are trying to create a default DS"); 59089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59099371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59109371c9d4SSatish Balay if (!dm->fields[f].label) fld[nf++] = f; 59119566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59139566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59149566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 591588f0c812SMatthew G. Knepley 59169566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 591707218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, NULL, fields, dsDef, NULL)); 59189566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fields)); 59202df9ee95SMatthew G. Knepley } 592107218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(dm, NULL, NULL, &dsDef, NULL)); 59229566063dSJacob Faibussowitsch if (dsDef) PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 5923083401c6SMatthew G. Knepley /* Intersect labels with default fields */ 5924083401c6SMatthew G. Knepley if (Ndef && Nl) { 59250122748bSMatthew G. Knepley DM plex; 5926083401c6SMatthew G. Knepley DMLabel cellLabel; 5927083401c6SMatthew G. Knepley IS fieldIS, allcellIS, defcellIS = NULL; 5928083401c6SMatthew G. Knepley PetscInt *fields; 5929083401c6SMatthew G. Knepley const PetscInt *cells; 5930083401c6SMatthew G. Knepley PetscInt depth, nf = 0, n, c; 59310122748bSMatthew G. Knepley 59329566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 59339566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepth(plex, &depth)); 59349566063dSJacob Faibussowitsch PetscCall(DMGetStratumIS(plex, "dim", depth, &allcellIS)); 59359566063dSJacob Faibussowitsch if (!allcellIS) PetscCall(DMGetStratumIS(plex, "depth", depth, &allcellIS)); 59365fedec97SMatthew G. Knepley /* TODO This looks like it only works for one label */ 5937083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5938083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 5939083401c6SMatthew G. Knepley IS pointIS; 5940083401c6SMatthew G. Knepley 59419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59429566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, 1, &pointIS)); 59439566063dSJacob Faibussowitsch PetscCall(ISDifference(allcellIS, pointIS, &defcellIS)); 59449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&pointIS)); 5945083401c6SMatthew G. Knepley } 59469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&allcellIS)); 5947083401c6SMatthew G. Knepley 59489566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "defaultCells", &cellLabel)); 59499566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(defcellIS, &n)); 59509566063dSJacob Faibussowitsch PetscCall(ISGetIndices(defcellIS, &cells)); 59519566063dSJacob Faibussowitsch for (c = 0; c < n; ++c) PetscCall(DMLabelSetValue(cellLabel, cells[c], 1)); 59529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(defcellIS, &cells)); 59539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&defcellIS)); 59549566063dSJacob Faibussowitsch PetscCall(DMPlexLabelComplete(plex, cellLabel)); 5955083401c6SMatthew G. Knepley 59569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ndef, &fields)); 59579371c9d4SSatish Balay for (f = 0; f < Nf; ++f) 59589371c9d4SSatish Balay if (!dm->fields[f].label) fields[nf++] = f; 59599566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fieldIS)); 59609566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fieldIS, "dm_fields_")); 59619566063dSJacob Faibussowitsch PetscCall(ISSetType(fieldIS, ISGENERAL)); 59629566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fieldIS, nf, fields, PETSC_OWN_POINTER)); 5963083401c6SMatthew G. Knepley 59649566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsDef)); 596507218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, cellLabel, fieldIS, dsDef, NULL)); 59669566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(dsDef, dE)); 59679566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&cellLabel)); 59689566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsDef)); 59699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&fieldIS)); 59709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&plex)); 5971083401c6SMatthew G. Knepley } 5972083401c6SMatthew G. Knepley /* Create label DSes 5973083401c6SMatthew G. Knepley - WE ONLY SUPPORT IDENTICAL OR DISJOINT LABELS 5974083401c6SMatthew G. Knepley */ 5975083401c6SMatthew G. Knepley /* TODO Should check that labels are disjoint */ 5976083401c6SMatthew G. Knepley for (l = 0; l < Nl; ++l) { 5977083401c6SMatthew G. Knepley DMLabel label = labelSet[l]; 597807218a29SMatthew G. Knepley PetscDS ds, dsIn = NULL; 5979083401c6SMatthew G. Knepley IS fields; 5980083401c6SMatthew G. Knepley PetscInt *fld, nf; 5981083401c6SMatthew G. Knepley 59829566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PETSC_COMM_SELF, &ds)); 59839371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59849371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) ++nf; 59859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nf, &fld)); 59869371c9d4SSatish Balay for (f = 0, nf = 0; f < Nf; ++f) 59879371c9d4SSatish Balay if (label == dm->fields[f].label || !dm->fields[f].label) fld[nf++] = f; 59889566063dSJacob Faibussowitsch PetscCall(ISCreate(PETSC_COMM_SELF, &fields)); 59899566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)fields, "dm_fields_")); 59909566063dSJacob Faibussowitsch PetscCall(ISSetType(fields, ISGENERAL)); 59919566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(fields, nf, fld, PETSC_OWN_POINTER)); 59929566063dSJacob Faibussowitsch PetscCall(PetscDSSetCoordinateDimension(ds, dE)); 5993083401c6SMatthew G. Knepley { 5994083401c6SMatthew G. Knepley DMPolytopeType ct; 5995083401c6SMatthew G. Knepley PetscInt lStart, lEnd; 59965fedec97SMatthew G. Knepley PetscBool isCohesiveLocal = PETSC_FALSE, isCohesive; 59970122748bSMatthew G. Knepley 59989566063dSJacob Faibussowitsch PetscCall(DMLabelGetBounds(label, &lStart, &lEnd)); 5999665f567fSMatthew G. Knepley if (lStart >= 0) { 60009566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, lStart, &ct)); 6001412e9a14SMatthew G. Knepley switch (ct) { 6002412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 6003412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 6004412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 6005d71ae5a4SJacob Faibussowitsch case DM_POLYTOPE_QUAD_PRISM_TENSOR: 6006d71ae5a4SJacob Faibussowitsch isCohesiveLocal = PETSC_TRUE; 6007d71ae5a4SJacob Faibussowitsch break; 6008d71ae5a4SJacob Faibussowitsch default: 6009d71ae5a4SJacob Faibussowitsch break; 6010412e9a14SMatthew G. Knepley } 6011665f567fSMatthew G. Knepley } 6012712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&isCohesiveLocal, &isCohesive, 1, MPIU_BOOL, MPI_LOR, comm)); 601307218a29SMatthew G. Knepley if (isCohesive) { 601407218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PETSC_COMM_SELF, &dsIn)); 601507218a29SMatthew G. Knepley PetscCall(PetscDSSetCoordinateDimension(dsIn, dE)); 601607218a29SMatthew G. Knepley } 60175fedec97SMatthew G. Knepley for (f = 0, nf = 0; f < Nf; ++f) { 60185fedec97SMatthew G. Knepley if (label == dm->fields[f].label || !dm->fields[f].label) { 60195fedec97SMatthew G. Knepley if (label == dm->fields[f].label) { 60209566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, nf, NULL)); 60219566063dSJacob Faibussowitsch PetscCall(PetscDSSetCohesive(ds, nf, isCohesive)); 602207218a29SMatthew G. Knepley if (dsIn) { 602307218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, nf, NULL)); 602407218a29SMatthew G. Knepley PetscCall(PetscDSSetCohesive(dsIn, nf, isCohesive)); 602507218a29SMatthew G. Knepley } 60265fedec97SMatthew G. Knepley } 60275fedec97SMatthew G. Knepley ++nf; 60285fedec97SMatthew G. Knepley } 60295fedec97SMatthew G. Knepley } 6030e5e52638SMatthew G. Knepley } 603107218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, ds, dsIn)); 603207218a29SMatthew G. Knepley PetscCall(ISDestroy(&fields)); 60339566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&ds)); 603407218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsIn)); 6035e5e52638SMatthew G. Knepley } 60369566063dSJacob Faibussowitsch PetscCall(PetscFree(labelSet)); 6037e5e52638SMatthew G. Knepley /* Set fields in DSes */ 6038083401c6SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6039083401c6SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 604007218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 6041083401c6SMatthew G. Knepley IS fields = dm->probs[s].fields; 6042083401c6SMatthew G. Knepley const PetscInt *fld; 60435fedec97SMatthew G. Knepley PetscInt nf, dsnf; 60445fedec97SMatthew G. Knepley PetscBool isCohesive; 6045e5e52638SMatthew G. Knepley 60469566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsnf)); 60479566063dSJacob Faibussowitsch PetscCall(PetscDSIsCohesive(ds, &isCohesive)); 60489566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(fields, &nf)); 60499566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fields, &fld)); 6050083401c6SMatthew G. Knepley for (f = 0; f < nf; ++f) { 6051083401c6SMatthew G. Knepley PetscObject disc = dm->fields[fld[f]].disc; 60525fedec97SMatthew G. Knepley PetscBool isCohesiveField; 6053e5e52638SMatthew G. Knepley PetscClassId id; 6054e5e52638SMatthew G. Knepley 60555fedec97SMatthew G. Knepley /* Handle DS with no fields */ 60569566063dSJacob Faibussowitsch if (dsnf) PetscCall(PetscDSGetCohesive(ds, f, &isCohesiveField)); 60575fedec97SMatthew G. Knepley /* If this is a cohesive cell, then regular fields need the lower dimensional discretization */ 605807218a29SMatthew G. Knepley if (isCohesive) { 605907218a29SMatthew G. Knepley if (!isCohesiveField) { 606007218a29SMatthew G. Knepley PetscObject bdDisc; 606107218a29SMatthew G. Knepley 606207218a29SMatthew G. Knepley PetscCall(PetscFEGetHeightSubspace((PetscFE)disc, 1, (PetscFE *)&bdDisc)); 606307218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, bdDisc)); 606407218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 606507218a29SMatthew G. Knepley } else { 60669566063dSJacob Faibussowitsch PetscCall(PetscDSSetDiscretization(ds, f, disc)); 606707218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(dsIn, f, disc)); 606807218a29SMatthew G. Knepley } 606907218a29SMatthew G. Knepley } else { 607007218a29SMatthew G. Knepley PetscCall(PetscDSSetDiscretization(ds, f, disc)); 607107218a29SMatthew G. Knepley } 6072083401c6SMatthew G. Knepley /* We allow people to have placeholder fields and construct the Section by hand */ 60739566063dSJacob Faibussowitsch PetscCall(PetscObjectGetClassId(disc, &id)); 6074e5e52638SMatthew G. Knepley if ((id != PETSCFE_CLASSID) && (id != PETSCFV_CLASSID)) doSetup = PETSC_FALSE; 6075e5e52638SMatthew G. Knepley } 60769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fields, &fld)); 6077e5e52638SMatthew G. Knepley } 6078f9244615SMatthew G. Knepley /* Allow k-jet tabulation */ 60799566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, ((PetscObject)dm)->prefix, "-dm_ds_jet_degree", &k, &flg)); 6080f9244615SMatthew G. Knepley if (flg) { 60813b4aee56SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 60823b4aee56SMatthew G. Knepley PetscDS ds = dm->probs[s].ds; 608307218a29SMatthew G. Knepley PetscDS dsIn = dm->probs[s].dsIn; 60843b4aee56SMatthew G. Knepley PetscInt Nf, f; 60853b4aee56SMatthew G. Knepley 60869566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &Nf)); 608707218a29SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 608807218a29SMatthew G. Knepley PetscCall(PetscDSSetJetDegree(ds, f, k)); 608907218a29SMatthew G. Knepley if (dsIn) PetscCall(PetscDSSetJetDegree(dsIn, f, k)); 609007218a29SMatthew G. Knepley } 60913b4aee56SMatthew G. Knepley } 6092f9244615SMatthew G. Knepley } 6093e5e52638SMatthew G. Knepley /* Setup DSes */ 6094e5e52638SMatthew G. Knepley if (doSetup) { 609507218a29SMatthew G. Knepley for (s = 0; s < dm->Nds; ++s) { 6096cf1363e4SMatthew G. Knepley if (dm->setfromoptionscalled) { 6097cf1363e4SMatthew G. Knepley PetscCall(PetscDSSetFromOptions(dm->probs[s].ds)); 6098cf1363e4SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetFromOptions(dm->probs[s].dsIn)); 6099cf1363e4SMatthew G. Knepley } 610007218a29SMatthew G. Knepley PetscCall(PetscDSSetUp(dm->probs[s].ds)); 610107218a29SMatthew G. Knepley if (dm->probs[s].dsIn) PetscCall(PetscDSSetUp(dm->probs[s].dsIn)); 610207218a29SMatthew G. Knepley } 6103e5e52638SMatthew G. Knepley } 61043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6105e5e52638SMatthew G. Knepley } 6106e5e52638SMatthew G. Knepley 6107e5e52638SMatthew G. Knepley /*@ 6108d2b2dc1eSMatthew G. Knepley DMUseTensorOrder - Use a tensor product closure ordering for the default section 6109d2b2dc1eSMatthew G. Knepley 6110d2b2dc1eSMatthew G. Knepley Input Parameters: 6111d2b2dc1eSMatthew G. Knepley + dm - The DM 6112d2b2dc1eSMatthew G. Knepley - tensor - Flag for tensor order 6113d2b2dc1eSMatthew G. Knepley 6114d2b2dc1eSMatthew G. Knepley Level: developer 6115d2b2dc1eSMatthew G. Knepley 6116d2b2dc1eSMatthew G. Knepley .seealso: `DMPlexSetClosurePermutationTensor()`, `PetscSectionResetClosurePermutation()` 6117d2b2dc1eSMatthew G. Knepley @*/ 6118d2b2dc1eSMatthew G. Knepley PetscErrorCode DMUseTensorOrder(DM dm, PetscBool tensor) 6119d2b2dc1eSMatthew G. Knepley { 6120d2b2dc1eSMatthew G. Knepley PetscInt Nf; 6121d2b2dc1eSMatthew G. Knepley PetscBool reorder = PETSC_TRUE, isPlex; 6122d2b2dc1eSMatthew G. Knepley 6123d2b2dc1eSMatthew G. Knepley PetscFunctionBegin; 6124d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectTypeCompare((PetscObject)dm, DMPLEX, &isPlex)); 6125d2b2dc1eSMatthew G. Knepley PetscCall(DMGetNumFields(dm, &Nf)); 6126d2b2dc1eSMatthew G. Knepley for (PetscInt f = 0; f < Nf; ++f) { 6127d2b2dc1eSMatthew G. Knepley PetscObject obj; 6128d2b2dc1eSMatthew G. Knepley PetscClassId id; 6129d2b2dc1eSMatthew G. Knepley 6130d2b2dc1eSMatthew G. Knepley PetscCall(DMGetField(dm, f, NULL, &obj)); 6131d2b2dc1eSMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 6132d2b2dc1eSMatthew G. Knepley if (id == PETSCFE_CLASSID) { 6133d2b2dc1eSMatthew G. Knepley PetscSpace sp; 6134d2b2dc1eSMatthew G. Knepley PetscBool tensor; 6135d2b2dc1eSMatthew G. Knepley 6136d2b2dc1eSMatthew G. Knepley PetscCall(PetscFEGetBasisSpace((PetscFE)obj, &sp)); 6137d2b2dc1eSMatthew G. Knepley PetscCall(PetscSpacePolynomialGetTensor(sp, &tensor)); 6138d2b2dc1eSMatthew G. Knepley reorder = reorder && tensor ? PETSC_TRUE : PETSC_FALSE; 6139d2b2dc1eSMatthew G. Knepley } else reorder = PETSC_FALSE; 6140d2b2dc1eSMatthew G. Knepley } 6141d2b2dc1eSMatthew G. Knepley if (tensor) { 6142d2b2dc1eSMatthew G. Knepley if (reorder && isPlex) PetscCall(DMPlexSetClosurePermutationTensor(dm, PETSC_DETERMINE, NULL)); 6143d2b2dc1eSMatthew G. Knepley } else { 6144d2b2dc1eSMatthew G. Knepley PetscSection s; 6145d2b2dc1eSMatthew G. Knepley 6146d2b2dc1eSMatthew G. Knepley PetscCall(DMGetLocalSection(dm, &s)); 6147d2b2dc1eSMatthew G. Knepley if (s) PetscCall(PetscSectionResetClosurePermutation(s)); 6148d2b2dc1eSMatthew G. Knepley } 6149d2b2dc1eSMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 6150d2b2dc1eSMatthew G. Knepley } 6151d2b2dc1eSMatthew G. Knepley 6152d2b2dc1eSMatthew G. Knepley /*@ 6153bb7acecfSBarry Smith DMComputeExactSolution - Compute the exact solution for a given `DM`, using the `PetscDS` information. 61547f96f943SMatthew G. Knepley 615520f4b53cSBarry Smith Collective 6156f2cacb80SMatthew G. Knepley 61577f96f943SMatthew G. Knepley Input Parameters: 6158bb7acecfSBarry Smith + dm - The `DM` 61597f96f943SMatthew G. Knepley - time - The time 61607f96f943SMatthew G. Knepley 61617f96f943SMatthew G. Knepley Output Parameters: 616220f4b53cSBarry Smith + u - The vector will be filled with exact solution values, or `NULL` 616320f4b53cSBarry Smith - u_t - The vector will be filled with the time derivative of exact solution values, or `NULL` 616420f4b53cSBarry Smith 616520f4b53cSBarry Smith Level: developer 61667f96f943SMatthew G. Knepley 6167bb7acecfSBarry Smith Note: 6168bb7acecfSBarry Smith The user must call `PetscDSSetExactSolution()` before using this routine 61697f96f943SMatthew G. Knepley 61701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscDSSetExactSolution()` 61717f96f943SMatthew G. Knepley @*/ 6172d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeExactSolution(DM dm, PetscReal time, Vec u, Vec u_t) 6173d71ae5a4SJacob Faibussowitsch { 61747f96f943SMatthew G. Knepley PetscErrorCode (**exacts)(PetscInt, PetscReal, const PetscReal x[], PetscInt, PetscScalar *u, void *ctx); 61757f96f943SMatthew G. Knepley void **ectxs; 6176f60fa741SMatthew G. Knepley Vec locu, locu_t; 61777f96f943SMatthew G. Knepley PetscInt Nf, Nds, s; 61787f96f943SMatthew G. Knepley 61797f96f943SMatthew G. Knepley PetscFunctionBegin; 6180f2cacb80SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6181f60fa741SMatthew G. Knepley if (u) { 6182f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u, VEC_CLASSID, 3); 6183f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu)); 6184f60fa741SMatthew G. Knepley PetscCall(VecSet(locu, 0.)); 6185f60fa741SMatthew G. Knepley } 6186f60fa741SMatthew G. Knepley if (u_t) { 6187f60fa741SMatthew G. Knepley PetscValidHeaderSpecific(u_t, VEC_CLASSID, 4); 6188f60fa741SMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &locu_t)); 6189f60fa741SMatthew G. Knepley PetscCall(VecSet(locu_t, 0.)); 6190f60fa741SMatthew G. Knepley } 61919566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 61929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(Nf, &exacts, Nf, &ectxs)); 61939566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 61947f96f943SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 61957f96f943SMatthew G. Knepley PetscDS ds; 61967f96f943SMatthew G. Knepley DMLabel label; 61977f96f943SMatthew G. Knepley IS fieldIS; 61987f96f943SMatthew G. Knepley const PetscInt *fields, id = 1; 61997f96f943SMatthew G. Knepley PetscInt dsNf, f; 62007f96f943SMatthew G. Knepley 620107218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 62029566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 62039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(fieldIS, &fields)); 62049566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6206f2cacb80SMatthew G. Knepley if (u) { 6207f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolution(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6208f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu)); 6209f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu)); 62107f96f943SMatthew G. Knepley } 6211f2cacb80SMatthew G. Knepley if (u_t) { 62129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(exacts, Nf)); 62139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ectxs, Nf)); 6214f60fa741SMatthew G. Knepley for (f = 0; f < dsNf; ++f) PetscCall(PetscDSGetExactSolutionTimeDerivative(ds, fields[f], &exacts[fields[f]], &ectxs[fields[f]])); 6215f60fa741SMatthew G. Knepley if (label) PetscCall(DMProjectFunctionLabelLocal(dm, time, label, 1, &id, 0, NULL, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6216f60fa741SMatthew G. Knepley else PetscCall(DMProjectFunctionLocal(dm, time, exacts, ectxs, INSERT_ALL_VALUES, locu_t)); 6217f2cacb80SMatthew G. Knepley } 62189566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(fieldIS, &fields)); 6219f2cacb80SMatthew G. Knepley } 6220f2cacb80SMatthew G. Knepley if (u) { 62219566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution")); 62229566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u, "exact_")); 6223f2cacb80SMatthew G. Knepley } 6224f2cacb80SMatthew G. Knepley if (u_t) { 62259566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)u, "Exact Solution Time Derivative")); 62269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetOptionsPrefix((PetscObject)u_t, "exact_t_")); 6227f2cacb80SMatthew G. Knepley } 62289566063dSJacob Faibussowitsch PetscCall(PetscFree2(exacts, ectxs)); 6229f60fa741SMatthew G. Knepley if (u) { 6230f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu, INSERT_ALL_VALUES, u)); 6231f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu, INSERT_ALL_VALUES, u)); 6232f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu)); 6233f60fa741SMatthew G. Knepley } 6234f60fa741SMatthew G. Knepley if (u_t) { 6235f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6236f60fa741SMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, locu_t, INSERT_ALL_VALUES, u_t)); 6237f60fa741SMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &locu_t)); 6238f60fa741SMatthew G. Knepley } 62393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 62407f96f943SMatthew G. Knepley } 62417f96f943SMatthew G. Knepley 624207218a29SMatthew G. Knepley static PetscErrorCode DMTransferDS_Internal(DM dm, DMLabel label, IS fields, PetscDS ds, PetscDS dsIn) 6243d71ae5a4SJacob Faibussowitsch { 624407218a29SMatthew G. Knepley PetscDS dsNew, dsInNew = NULL; 624545480ffeSMatthew G. Knepley 624645480ffeSMatthew G. Knepley PetscFunctionBegin; 62479566063dSJacob Faibussowitsch PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)ds), &dsNew)); 624807218a29SMatthew G. Knepley PetscCall(PetscDSCopy(ds, dm, dsNew)); 624907218a29SMatthew G. Knepley if (dsIn) { 625007218a29SMatthew G. Knepley PetscCall(PetscDSCreate(PetscObjectComm((PetscObject)dsIn), &dsInNew)); 625107218a29SMatthew G. Knepley PetscCall(PetscDSCopy(dsIn, dm, dsInNew)); 625245480ffeSMatthew G. Knepley } 625307218a29SMatthew G. Knepley PetscCall(DMSetRegionDS(dm, label, fields, dsNew, dsInNew)); 62549566063dSJacob Faibussowitsch PetscCall(PetscDSDestroy(&dsNew)); 625507218a29SMatthew G. Knepley PetscCall(PetscDSDestroy(&dsInNew)); 62563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 625745480ffeSMatthew G. Knepley } 625845480ffeSMatthew G. Knepley 62597f96f943SMatthew G. Knepley /*@ 6260bb7acecfSBarry Smith DMCopyDS - Copy the discrete systems for the `DM` into another `DM` 6261e5e52638SMatthew G. Knepley 626220f4b53cSBarry Smith Collective 6263e5e52638SMatthew G. Knepley 6264e5e52638SMatthew G. Knepley Input Parameter: 6265bb7acecfSBarry Smith . dm - The `DM` 6266e5e52638SMatthew G. Knepley 6267e5e52638SMatthew G. Knepley Output Parameter: 6268bb7acecfSBarry Smith . newdm - The `DM` 6269e5e52638SMatthew G. Knepley 6270e5e52638SMatthew G. Knepley Level: advanced 6271e5e52638SMatthew G. Knepley 62721cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMAddField()`, `DMGetDS()`, `DMGetCellDS()`, `DMGetRegionDS()`, `DMSetRegionDS()` 6273e5e52638SMatthew G. Knepley @*/ 6274d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDS(DM dm, DM newdm) 6275d71ae5a4SJacob Faibussowitsch { 6276e5e52638SMatthew G. Knepley PetscInt Nds, s; 6277e5e52638SMatthew G. Knepley 6278e5e52638SMatthew G. Knepley PetscFunctionBegin; 62793ba16761SJacob Faibussowitsch if (dm == newdm) PetscFunctionReturn(PETSC_SUCCESS); 62809566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 62819566063dSJacob Faibussowitsch PetscCall(DMClearDS(newdm)); 6282e5e52638SMatthew G. Knepley for (s = 0; s < Nds; ++s) { 6283e5e52638SMatthew G. Knepley DMLabel label; 6284b3cf3223SMatthew G. Knepley IS fields; 628507218a29SMatthew G. Knepley PetscDS ds, dsIn, newds; 6286783e2ec8SMatthew G. Knepley PetscInt Nbd, bd; 6287e5e52638SMatthew G. Knepley 628807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fields, &ds, &dsIn)); 6289b8025e53SMatthew G. Knepley /* TODO: We need to change all keys from labels in the old DM to labels in the new DM */ 629007218a29SMatthew G. Knepley PetscCall(DMTransferDS_Internal(newdm, label, fields, ds, dsIn)); 6291d5b43468SJose E. Roman /* Complete new labels in the new DS */ 629207218a29SMatthew G. Knepley PetscCall(DMGetRegionDS(newdm, label, NULL, &newds, NULL)); 62939566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumBoundary(newds, &Nbd)); 6294783e2ec8SMatthew G. Knepley for (bd = 0; bd < Nbd; ++bd) { 6295b8025e53SMatthew G. Knepley PetscWeakForm wf; 629645480ffeSMatthew G. Knepley DMLabel label; 6297783e2ec8SMatthew G. Knepley PetscInt field; 6298783e2ec8SMatthew G. Knepley 62999566063dSJacob Faibussowitsch PetscCall(PetscDSGetBoundary(newds, bd, &wf, NULL, NULL, &label, NULL, NULL, &field, NULL, NULL, NULL, NULL, NULL)); 63009566063dSJacob Faibussowitsch PetscCall(PetscWeakFormReplaceLabel(wf, label)); 6301783e2ec8SMatthew G. Knepley } 6302e5e52638SMatthew G. Knepley } 6303799db056SMatthew G. Knepley PetscCall(DMCompleteBCLabels_Internal(newdm)); 63043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6305e5e52638SMatthew G. Knepley } 6306e5e52638SMatthew G. Knepley 6307e5e52638SMatthew G. Knepley /*@ 6308bb7acecfSBarry Smith DMCopyDisc - Copy the fields and discrete systems for the `DM` into another `DM` 6309e5e52638SMatthew G. Knepley 631020f4b53cSBarry Smith Collective 6311e5e52638SMatthew G. Knepley 6312e5e52638SMatthew G. Knepley Input Parameter: 6313bb7acecfSBarry Smith . dm - The `DM` 6314e5e52638SMatthew G. Knepley 6315e5e52638SMatthew G. Knepley Output Parameter: 6316bb7acecfSBarry Smith . newdm - The `DM` 6317e5e52638SMatthew G. Knepley 6318e5e52638SMatthew G. Knepley Level: advanced 6319e5e52638SMatthew G. Knepley 6320*73ff1848SBarry Smith Developer Note: 6321bb7acecfSBarry Smith Really ugly name, nothing in PETSc is called a `Disc` plus it is an ugly abbreviation 6322bb7acecfSBarry Smith 63231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCopyFields()`, `DMCopyDS()` 6324e5e52638SMatthew G. Knepley @*/ 6325d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyDisc(DM dm, DM newdm) 6326d71ae5a4SJacob Faibussowitsch { 6327e5e52638SMatthew G. Knepley PetscFunctionBegin; 63289566063dSJacob Faibussowitsch PetscCall(DMCopyFields(dm, newdm)); 63299566063dSJacob Faibussowitsch PetscCall(DMCopyDS(dm, newdm)); 63303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6331e5e52638SMatthew G. Knepley } 6332e5e52638SMatthew G. Knepley 6333c73cfb54SMatthew G. Knepley /*@ 6334bb7acecfSBarry Smith DMGetDimension - Return the topological dimension of the `DM` 6335c73cfb54SMatthew G. Knepley 633620f4b53cSBarry Smith Not Collective 6337c73cfb54SMatthew G. Knepley 6338c73cfb54SMatthew G. Knepley Input Parameter: 6339bb7acecfSBarry Smith . dm - The `DM` 6340c73cfb54SMatthew G. Knepley 6341c73cfb54SMatthew G. Knepley Output Parameter: 6342c73cfb54SMatthew G. Knepley . dim - The topological dimension 6343c73cfb54SMatthew G. Knepley 6344c73cfb54SMatthew G. Knepley Level: beginner 6345c73cfb54SMatthew G. Knepley 63461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetDimension()`, `DMCreate()` 6347c73cfb54SMatthew G. Knepley @*/ 6348d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimension(DM dm, PetscInt *dim) 6349d71ae5a4SJacob Faibussowitsch { 6350c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6351c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 63524f572ea9SToby Isaac PetscAssertPointer(dim, 2); 6353c73cfb54SMatthew G. Knepley *dim = dm->dim; 63543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6355c73cfb54SMatthew G. Knepley } 6356c73cfb54SMatthew G. Knepley 6357c73cfb54SMatthew G. Knepley /*@ 6358bb7acecfSBarry Smith DMSetDimension - Set the topological dimension of the `DM` 6359c73cfb54SMatthew G. Knepley 636020f4b53cSBarry Smith Collective 6361c73cfb54SMatthew G. Knepley 6362c73cfb54SMatthew G. Knepley Input Parameters: 6363bb7acecfSBarry Smith + dm - The `DM` 6364c73cfb54SMatthew G. Knepley - dim - The topological dimension 6365c73cfb54SMatthew G. Knepley 6366c73cfb54SMatthew G. Knepley Level: beginner 6367c73cfb54SMatthew G. Knepley 63681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetDimension()`, `DMCreate()` 6369c73cfb54SMatthew G. Knepley @*/ 6370d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetDimension(DM dm, PetscInt dim) 6371d71ae5a4SJacob Faibussowitsch { 6372e5e52638SMatthew G. Knepley PetscDS ds; 637345480ffeSMatthew G. Knepley PetscInt Nds, n; 6374f17e8794SMatthew G. Knepley 6375c73cfb54SMatthew G. Knepley PetscFunctionBegin; 6376c73cfb54SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6377c73cfb54SMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, dim, 2); 6378c73cfb54SMatthew G. Knepley dm->dim = dim; 6379d17bd122SMatthew G. Knepley if (dm->dim >= 0) { 63809566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 638145480ffeSMatthew G. Knepley for (n = 0; n < Nds; ++n) { 638207218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, n, NULL, NULL, &ds, NULL)); 63839566063dSJacob Faibussowitsch if (ds->dimEmbed < 0) PetscCall(PetscDSSetCoordinateDimension(ds, dim)); 638445480ffeSMatthew G. Knepley } 6385d17bd122SMatthew G. Knepley } 63863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6387c73cfb54SMatthew G. Knepley } 6388c73cfb54SMatthew G. Knepley 6389793f3fe5SMatthew G. Knepley /*@ 6390793f3fe5SMatthew G. Knepley DMGetDimPoints - Get the half-open interval for all points of a given dimension 6391793f3fe5SMatthew G. Knepley 639220f4b53cSBarry Smith Collective 6393793f3fe5SMatthew G. Knepley 6394793f3fe5SMatthew G. Knepley Input Parameters: 6395bb7acecfSBarry Smith + dm - the `DM` 6396793f3fe5SMatthew G. Knepley - dim - the dimension 6397793f3fe5SMatthew G. Knepley 6398793f3fe5SMatthew G. Knepley Output Parameters: 6399793f3fe5SMatthew G. Knepley + pStart - The first point of the given dimension 6400aa049354SPatrick Sanan - pEnd - The first point following points of the given dimension 6401793f3fe5SMatthew G. Knepley 640220f4b53cSBarry Smith Level: intermediate 640320f4b53cSBarry Smith 6404793f3fe5SMatthew G. Knepley Note: 6405793f3fe5SMatthew G. Knepley The points are vertices in the Hasse diagram encoding the topology. This is explained in 6406a8d69d7bSBarry Smith https://arxiv.org/abs/0908.4427. If no points exist of this dimension in the storage scheme, 6407793f3fe5SMatthew G. Knepley then the interval is empty. 6408793f3fe5SMatthew G. Knepley 64091cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPLEX`, `DMPlexGetDepthStratum()`, `DMPlexGetHeightStratum()` 6410793f3fe5SMatthew G. Knepley @*/ 6411d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetDimPoints(DM dm, PetscInt dim, PetscInt *pStart, PetscInt *pEnd) 6412d71ae5a4SJacob Faibussowitsch { 6413793f3fe5SMatthew G. Knepley PetscInt d; 6414793f3fe5SMatthew G. Knepley 6415793f3fe5SMatthew G. Knepley PetscFunctionBegin; 6416793f3fe5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64179566063dSJacob Faibussowitsch PetscCall(DMGetDimension(dm, &d)); 64187a8be351SBarry Smith PetscCheck((dim >= 0) && (dim <= d), PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Invalid dimension %" PetscInt_FMT, dim); 6419dbbe0bcdSBarry Smith PetscUseTypeMethod(dm, getdimpoints, dim, pStart, pEnd); 64203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6421793f3fe5SMatthew G. Knepley } 6422793f3fe5SMatthew G. Knepley 64236636e97aSMatthew G Knepley /*@ 6424bb7acecfSBarry Smith DMGetOutputDM - Retrieve the `DM` associated with the layout for output 6425f4d763aaSMatthew G. Knepley 642620f4b53cSBarry Smith Collective 64278f700142SStefano Zampini 6428f4d763aaSMatthew G. Knepley Input Parameter: 6429bb7acecfSBarry Smith . dm - The original `DM` 6430f4d763aaSMatthew G. Knepley 6431f4d763aaSMatthew G. Knepley Output Parameter: 6432bb7acecfSBarry Smith . odm - The `DM` which provides the layout for output 6433f4d763aaSMatthew G. Knepley 6434f4d763aaSMatthew G. Knepley Level: intermediate 6435f4d763aaSMatthew G. Knepley 6436bb7acecfSBarry Smith Note: 6437bb7acecfSBarry Smith In some situations the vector obtained with `DMCreateGlobalVector()` excludes points for degrees of freedom that are associated with fixed (Dirichelet) boundary 6438bb7acecfSBarry Smith conditions since the algebraic solver does not solve for those variables. The output `DM` includes these excluded points and its global vector contains the 6439bb7acecfSBarry Smith locations for those dof so that they can be output to a file or other viewer along with the unconstrained dof. 6440bb7acecfSBarry Smith 64411cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()`, `DMGetGlobalSection()`, `DMCreateGlobalVector()`, `PetscSectionHasConstraints()`, `DMSetGlobalSection()` 6442f4d763aaSMatthew G. Knepley @*/ 6443d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputDM(DM dm, DM *odm) 6444d71ae5a4SJacob Faibussowitsch { 6445c26acbdeSMatthew G. Knepley PetscSection section; 6446eb9d3e4dSMatthew G. Knepley IS perm; 6447eb9d3e4dSMatthew G. Knepley PetscBool hasConstraints, newDM, gnewDM; 644814f150ffSMatthew G. Knepley 644914f150ffSMatthew G. Knepley PetscFunctionBegin; 645014f150ffSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 64514f572ea9SToby Isaac PetscAssertPointer(odm, 2); 64529566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, §ion)); 64539566063dSJacob Faibussowitsch PetscCall(PetscSectionHasConstraints(section, &hasConstraints)); 6454eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionGetPermutation(section, &perm)); 6455eb9d3e4dSMatthew G. Knepley newDM = hasConstraints || perm ? PETSC_TRUE : PETSC_FALSE; 6456eb9d3e4dSMatthew G. Knepley PetscCall(MPIU_Allreduce(&newDM, &gnewDM, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)dm))); 6457eb9d3e4dSMatthew G. Knepley if (!gnewDM) { 6458c26acbdeSMatthew G. Knepley *odm = dm; 64593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6460c26acbdeSMatthew G. Knepley } 646114f150ffSMatthew G. Knepley if (!dm->dmBC) { 6462c26acbdeSMatthew G. Knepley PetscSection newSection, gsection; 646314f150ffSMatthew G. Knepley PetscSF sf; 6464eb9d3e4dSMatthew G. Knepley PetscBool usePerm = dm->ignorePermOutput ? PETSC_FALSE : PETSC_TRUE; 646514f150ffSMatthew G. Knepley 64669566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &dm->dmBC)); 64679566063dSJacob Faibussowitsch PetscCall(DMCopyDisc(dm, dm->dmBC)); 64689566063dSJacob Faibussowitsch PetscCall(PetscSectionClone(section, &newSection)); 64699566063dSJacob Faibussowitsch PetscCall(DMSetLocalSection(dm->dmBC, newSection)); 64709566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&newSection)); 64719566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm->dmBC, &sf)); 6472eb9d3e4dSMatthew G. Knepley PetscCall(PetscSectionCreateGlobalSection(section, sf, usePerm, PETSC_TRUE, PETSC_FALSE, &gsection)); 64739566063dSJacob Faibussowitsch PetscCall(DMSetGlobalSection(dm->dmBC, gsection)); 64749566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&gsection)); 647514f150ffSMatthew G. Knepley } 647614f150ffSMatthew G. Knepley *odm = dm->dmBC; 64773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 647814f150ffSMatthew G. Knepley } 6479f4d763aaSMatthew G. Knepley 6480f4d763aaSMatthew G. Knepley /*@ 6481cdb7a50dSMatthew G. Knepley DMGetOutputSequenceNumber - Retrieve the sequence number/value for output 6482f4d763aaSMatthew G. Knepley 6483f4d763aaSMatthew G. Knepley Input Parameter: 6484bb7acecfSBarry Smith . dm - The original `DM` 6485f4d763aaSMatthew G. Knepley 6486cdb7a50dSMatthew G. Knepley Output Parameters: 6487cdb7a50dSMatthew G. Knepley + num - The output sequence number 6488cdb7a50dSMatthew G. Knepley - val - The output sequence value 6489f4d763aaSMatthew G. Knepley 6490f4d763aaSMatthew G. Knepley Level: intermediate 6491f4d763aaSMatthew G. Knepley 6492bb7acecfSBarry Smith Note: 6493bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6494bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6495bb7acecfSBarry Smith 6496*73ff1848SBarry Smith Developer Note: 6497bb7acecfSBarry Smith The `DM` serves as a convenient place to store the current iteration value. The iteration is not 6498bb7acecfSBarry Smith not directly related to the `DM`. 6499f4d763aaSMatthew G. Knepley 65001cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6501f4d763aaSMatthew G. Knepley @*/ 6502d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetOutputSequenceNumber(DM dm, PetscInt *num, PetscReal *val) 6503d71ae5a4SJacob Faibussowitsch { 6504f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6505f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 65069371c9d4SSatish Balay if (num) { 65074f572ea9SToby Isaac PetscAssertPointer(num, 2); 65089371c9d4SSatish Balay *num = dm->outputSequenceNum; 65099371c9d4SSatish Balay } 65109371c9d4SSatish Balay if (val) { 65114f572ea9SToby Isaac PetscAssertPointer(val, 3); 65129371c9d4SSatish Balay *val = dm->outputSequenceVal; 65139371c9d4SSatish Balay } 65143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6515f4d763aaSMatthew G. Knepley } 6516f4d763aaSMatthew G. Knepley 6517f4d763aaSMatthew G. Knepley /*@ 6518cdb7a50dSMatthew G. Knepley DMSetOutputSequenceNumber - Set the sequence number/value for output 6519f4d763aaSMatthew G. Knepley 6520f4d763aaSMatthew G. Knepley Input Parameters: 6521bb7acecfSBarry Smith + dm - The original `DM` 6522cdb7a50dSMatthew G. Knepley . num - The output sequence number 6523cdb7a50dSMatthew G. Knepley - val - The output sequence value 6524f4d763aaSMatthew G. Knepley 6525f4d763aaSMatthew G. Knepley Level: intermediate 6526f4d763aaSMatthew G. Knepley 6527bb7acecfSBarry Smith Note: 6528bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6529bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6530f4d763aaSMatthew G. Knepley 65311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `VecView()` 6532f4d763aaSMatthew G. Knepley @*/ 6533d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetOutputSequenceNumber(DM dm, PetscInt num, PetscReal val) 6534d71ae5a4SJacob Faibussowitsch { 6535f4d763aaSMatthew G. Knepley PetscFunctionBegin; 6536f4d763aaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6537f4d763aaSMatthew G. Knepley dm->outputSequenceNum = num; 6538cdb7a50dSMatthew G. Knepley dm->outputSequenceVal = val; 65393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6540cdb7a50dSMatthew G. Knepley } 6541cdb7a50dSMatthew G. Knepley 6542cdb7a50dSMatthew G. Knepley /*@C 6543bb7acecfSBarry Smith DMOutputSequenceLoad - Retrieve the sequence value from a `PetscViewer` 6544cdb7a50dSMatthew G. Knepley 6545cdb7a50dSMatthew G. Knepley Input Parameters: 6546bb7acecfSBarry Smith + dm - The original `DM` 6547a4e35b19SJacob Faibussowitsch . viewer - The viewer to get it from 6548cdb7a50dSMatthew G. Knepley . name - The sequence name 6549cdb7a50dSMatthew G. Knepley - num - The output sequence number 6550cdb7a50dSMatthew G. Knepley 6551cdb7a50dSMatthew G. Knepley Output Parameter: 6552cdb7a50dSMatthew G. Knepley . val - The output sequence value 6553cdb7a50dSMatthew G. Knepley 6554cdb7a50dSMatthew G. Knepley Level: intermediate 6555cdb7a50dSMatthew G. Knepley 6556bb7acecfSBarry Smith Note: 6557bb7acecfSBarry Smith This is intended for output that should appear in sequence, for instance 6558bb7acecfSBarry Smith a set of timesteps in an `PETSCVIEWERHDF5` file, or a set of realizations of a stochastic system. 6559bb7acecfSBarry Smith 6560*73ff1848SBarry Smith Developer Note: 6561bb7acecfSBarry Smith It is unclear at the user API level why a `DM` is needed as input 6562cdb7a50dSMatthew G. Knepley 65631cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetOutputSequenceNumber()`, `DMSetOutputSequenceNumber()`, `VecView()` 6564cdb7a50dSMatthew G. Knepley @*/ 6565d71ae5a4SJacob Faibussowitsch PetscErrorCode DMOutputSequenceLoad(DM dm, PetscViewer viewer, const char *name, PetscInt num, PetscReal *val) 6566d71ae5a4SJacob Faibussowitsch { 6567cdb7a50dSMatthew G. Knepley PetscBool ishdf5; 6568cdb7a50dSMatthew G. Knepley 6569cdb7a50dSMatthew G. Knepley PetscFunctionBegin; 6570cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 6571cdb7a50dSMatthew G. Knepley PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 65724f572ea9SToby Isaac PetscAssertPointer(val, 5); 65739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 6574cdb7a50dSMatthew G. Knepley if (ishdf5) { 6575cdb7a50dSMatthew G. Knepley #if defined(PETSC_HAVE_HDF5) 6576cdb7a50dSMatthew G. Knepley PetscScalar value; 6577cdb7a50dSMatthew G. Knepley 65789566063dSJacob Faibussowitsch PetscCall(DMSequenceLoad_HDF5_Internal(dm, name, num, &value, viewer)); 65794aeb217fSMatthew G. Knepley *val = PetscRealPart(value); 6580cdb7a50dSMatthew G. Knepley #endif 6581cdb7a50dSMatthew G. Knepley } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid viewer; open viewer with PetscViewerHDF5Open()"); 65823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6583f4d763aaSMatthew G. Knepley } 65848e4ac7eaSMatthew G. Knepley 65858e4ac7eaSMatthew G. Knepley /*@ 6586bb7acecfSBarry Smith DMGetUseNatural - Get the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 65878e4ac7eaSMatthew G. Knepley 658820f4b53cSBarry Smith Not Collective 65898e4ac7eaSMatthew G. Knepley 65908e4ac7eaSMatthew G. Knepley Input Parameter: 6591bb7acecfSBarry Smith . dm - The `DM` 65928e4ac7eaSMatthew G. Knepley 65938e4ac7eaSMatthew G. Knepley Output Parameter: 6594bb7acecfSBarry Smith . useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 65958e4ac7eaSMatthew G. Knepley 65968e4ac7eaSMatthew G. Knepley Level: beginner 65978e4ac7eaSMatthew G. Knepley 65981cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetUseNatural()`, `DMCreate()` 65998e4ac7eaSMatthew G. Knepley @*/ 6600d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetUseNatural(DM dm, PetscBool *useNatural) 6601d71ae5a4SJacob Faibussowitsch { 66028e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66038e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66044f572ea9SToby Isaac PetscAssertPointer(useNatural, 2); 66058e4ac7eaSMatthew G. Knepley *useNatural = dm->useNatural; 66063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66078e4ac7eaSMatthew G. Knepley } 66088e4ac7eaSMatthew G. Knepley 66098e4ac7eaSMatthew G. Knepley /*@ 6610bb7acecfSBarry Smith DMSetUseNatural - Set the flag for creating a mapping to the natural order when a `DM` is (re)distributed in parallel 66118e4ac7eaSMatthew G. Knepley 661220f4b53cSBarry Smith Collective 66138e4ac7eaSMatthew G. Knepley 66148e4ac7eaSMatthew G. Knepley Input Parameters: 6615bb7acecfSBarry Smith + dm - The `DM` 6616bb7acecfSBarry Smith - useNatural - `PETSC_TRUE` to build the mapping to a natural order during distribution 66178e4ac7eaSMatthew G. Knepley 6618*73ff1848SBarry Smith Level: beginner 6619*73ff1848SBarry Smith 6620bb7acecfSBarry Smith Note: 6621bb7acecfSBarry Smith This also causes the map to be build after `DMCreateSubDM()` and `DMCreateSuperDM()` 66225d3b26e6SMatthew G. Knepley 66231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetUseNatural()`, `DMCreate()`, `DMPlexDistribute()`, `DMCreateSubDM()`, `DMCreateSuperDM()` 66248e4ac7eaSMatthew G. Knepley @*/ 6625d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetUseNatural(DM dm, PetscBool useNatural) 6626d71ae5a4SJacob Faibussowitsch { 66278e4ac7eaSMatthew G. Knepley PetscFunctionBegin; 66288e4ac7eaSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66298833efb5SBlaise Bourdin PetscValidLogicalCollectiveBool(dm, useNatural, 2); 66308e4ac7eaSMatthew G. Knepley dm->useNatural = useNatural; 66313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 66328e4ac7eaSMatthew G. Knepley } 6633c58f1c22SToby Isaac 6634c58f1c22SToby Isaac /*@C 6635bb7acecfSBarry Smith DMCreateLabel - Create a label of the given name if it does not already exist in the `DM` 6636c58f1c22SToby Isaac 6637c58f1c22SToby Isaac Not Collective 6638c58f1c22SToby Isaac 6639c58f1c22SToby Isaac Input Parameters: 6640bb7acecfSBarry Smith + dm - The `DM` object 6641c58f1c22SToby Isaac - name - The label name 6642c58f1c22SToby Isaac 6643c58f1c22SToby Isaac Level: intermediate 6644c58f1c22SToby Isaac 66451cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6646c58f1c22SToby Isaac @*/ 6647d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabel(DM dm, const char name[]) 6648d71ae5a4SJacob Faibussowitsch { 66495d80c0bfSVaclav Hapla PetscBool flg; 66505d80c0bfSVaclav Hapla DMLabel label; 6651c58f1c22SToby Isaac 6652c58f1c22SToby Isaac PetscFunctionBegin; 6653c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66544f572ea9SToby Isaac PetscAssertPointer(name, 2); 66559566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 6656c58f1c22SToby Isaac if (!flg) { 66579566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66589566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66599566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 6660c58f1c22SToby Isaac } 66613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6662c58f1c22SToby Isaac } 6663c58f1c22SToby Isaac 6664c58f1c22SToby Isaac /*@C 6665bb7acecfSBarry Smith DMCreateLabelAtIndex - Create a label of the given name at the given index. If it already exists in the `DM`, move it to this index. 66660fdc7489SMatthew Knepley 66670fdc7489SMatthew Knepley Not Collective 66680fdc7489SMatthew Knepley 66690fdc7489SMatthew Knepley Input Parameters: 6670bb7acecfSBarry Smith + dm - The `DM` object 66710fdc7489SMatthew Knepley . l - The index for the label 66720fdc7489SMatthew Knepley - name - The label name 66730fdc7489SMatthew Knepley 66740fdc7489SMatthew Knepley Level: intermediate 66750fdc7489SMatthew Knepley 66761cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMCreateLabel()`, `DMLabelCreate()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 66770fdc7489SMatthew Knepley @*/ 6678d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCreateLabelAtIndex(DM dm, PetscInt l, const char name[]) 6679d71ae5a4SJacob Faibussowitsch { 66800fdc7489SMatthew Knepley DMLabelLink orig, prev = NULL; 66810fdc7489SMatthew Knepley DMLabel label; 66820fdc7489SMatthew Knepley PetscInt Nl, m; 66830fdc7489SMatthew Knepley PetscBool flg, match; 66840fdc7489SMatthew Knepley const char *lname; 66850fdc7489SMatthew Knepley 66860fdc7489SMatthew Knepley PetscFunctionBegin; 66870fdc7489SMatthew Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 66884f572ea9SToby Isaac PetscAssertPointer(name, 3); 66899566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, name, &flg)); 66900fdc7489SMatthew Knepley if (!flg) { 66919566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, name, &label)); 66929566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dm, label)); 66939566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&label)); 66940fdc7489SMatthew Knepley } 66959566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 669663a3b9bcSJacob Faibussowitsch PetscCheck(l < Nl, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label index %" PetscInt_FMT " must be in [0, %" PetscInt_FMT ")", l, Nl); 66970fdc7489SMatthew Knepley for (m = 0, orig = dm->labels; m < Nl; ++m, prev = orig, orig = orig->next) { 66989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)orig->label, &lname)); 66999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &match)); 67000fdc7489SMatthew Knepley if (match) break; 67010fdc7489SMatthew Knepley } 67023ba16761SJacob Faibussowitsch if (m == l) PetscFunctionReturn(PETSC_SUCCESS); 67030fdc7489SMatthew Knepley if (!m) dm->labels = orig->next; 67040fdc7489SMatthew Knepley else prev->next = orig->next; 67050fdc7489SMatthew Knepley if (!l) { 67060fdc7489SMatthew Knepley orig->next = dm->labels; 67070fdc7489SMatthew Knepley dm->labels = orig; 67080fdc7489SMatthew Knepley } else { 6709fbccb6d4SPierre Jolivet for (m = 0, prev = dm->labels; m < l - 1; ++m, prev = prev->next); 67100fdc7489SMatthew Knepley orig->next = prev->next; 67110fdc7489SMatthew Knepley prev->next = orig; 67120fdc7489SMatthew Knepley } 67133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 67140fdc7489SMatthew Knepley } 67150fdc7489SMatthew Knepley 67160fdc7489SMatthew Knepley /*@C 6717bb7acecfSBarry Smith DMGetLabelValue - Get the value in a `DMLabel` for the given point, with -1 as the default 6718c58f1c22SToby Isaac 6719c58f1c22SToby Isaac Not Collective 6720c58f1c22SToby Isaac 6721c58f1c22SToby Isaac Input Parameters: 6722bb7acecfSBarry Smith + dm - The `DM` object 6723c58f1c22SToby Isaac . name - The label name 6724c58f1c22SToby Isaac - point - The mesh point 6725c58f1c22SToby Isaac 6726c58f1c22SToby Isaac Output Parameter: 6727c58f1c22SToby Isaac . value - The label value for this point, or -1 if the point is not in the label 6728c58f1c22SToby Isaac 6729c58f1c22SToby Isaac Level: beginner 6730c58f1c22SToby Isaac 67311cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6732c58f1c22SToby Isaac @*/ 6733d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelValue(DM dm, const char name[], PetscInt point, PetscInt *value) 6734d71ae5a4SJacob Faibussowitsch { 6735c58f1c22SToby Isaac DMLabel label; 6736c58f1c22SToby Isaac 6737c58f1c22SToby Isaac PetscFunctionBegin; 6738c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67394f572ea9SToby Isaac PetscAssertPointer(name, 2); 67409566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 67417a8be351SBarry Smith PetscCheck(label, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "No label named %s was found", name); 67429566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, point, value)); 67433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6744c58f1c22SToby Isaac } 6745c58f1c22SToby Isaac 6746c58f1c22SToby Isaac /*@C 6747bb7acecfSBarry Smith DMSetLabelValue - Add a point to a `DMLabel` with given value 6748c58f1c22SToby Isaac 6749c58f1c22SToby Isaac Not Collective 6750c58f1c22SToby Isaac 6751c58f1c22SToby Isaac Input Parameters: 6752bb7acecfSBarry Smith + dm - The `DM` object 6753c58f1c22SToby Isaac . name - The label name 6754c58f1c22SToby Isaac . point - The mesh point 6755c58f1c22SToby Isaac - value - The label value for this point 6756c58f1c22SToby Isaac 6757c58f1c22SToby Isaac Output Parameter: 6758c58f1c22SToby Isaac 6759c58f1c22SToby Isaac Level: beginner 6760c58f1c22SToby Isaac 67611cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelSetValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6762c58f1c22SToby Isaac @*/ 6763d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6764d71ae5a4SJacob Faibussowitsch { 6765c58f1c22SToby Isaac DMLabel label; 6766c58f1c22SToby Isaac 6767c58f1c22SToby Isaac PetscFunctionBegin; 6768c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 67694f572ea9SToby Isaac PetscAssertPointer(name, 2); 67709566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6771c58f1c22SToby Isaac if (!label) { 67729566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 67739566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6774c58f1c22SToby Isaac } 67759566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, point, value)); 67763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6777c58f1c22SToby Isaac } 6778c58f1c22SToby Isaac 6779c58f1c22SToby Isaac /*@C 6780bb7acecfSBarry Smith DMClearLabelValue - Remove a point from a `DMLabel` with given value 6781c58f1c22SToby Isaac 6782c58f1c22SToby Isaac Not Collective 6783c58f1c22SToby Isaac 6784c58f1c22SToby Isaac Input Parameters: 6785bb7acecfSBarry Smith + dm - The `DM` object 6786c58f1c22SToby Isaac . name - The label name 6787c58f1c22SToby Isaac . point - The mesh point 6788c58f1c22SToby Isaac - value - The label value for this point 6789c58f1c22SToby Isaac 6790c58f1c22SToby Isaac Level: beginner 6791c58f1c22SToby Isaac 67921cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelClearValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 6793c58f1c22SToby Isaac @*/ 6794d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelValue(DM dm, const char name[], PetscInt point, PetscInt value) 6795d71ae5a4SJacob Faibussowitsch { 6796c58f1c22SToby Isaac DMLabel label; 6797c58f1c22SToby Isaac 6798c58f1c22SToby Isaac PetscFunctionBegin; 6799c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68004f572ea9SToby Isaac PetscAssertPointer(name, 2); 68019566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 68023ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68039566063dSJacob Faibussowitsch PetscCall(DMLabelClearValue(label, point, value)); 68043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6805c58f1c22SToby Isaac } 6806c58f1c22SToby Isaac 6807c58f1c22SToby Isaac /*@C 6808bb7acecfSBarry Smith DMGetLabelSize - Get the value of `DMLabelGetNumValues()` of a `DMLabel` in the `DM` 6809c58f1c22SToby Isaac 6810c58f1c22SToby Isaac Not Collective 6811c58f1c22SToby Isaac 6812c58f1c22SToby Isaac Input Parameters: 6813bb7acecfSBarry Smith + dm - The `DM` object 6814c58f1c22SToby Isaac - name - The label name 6815c58f1c22SToby Isaac 6816c58f1c22SToby Isaac Output Parameter: 6817c58f1c22SToby Isaac . size - The number of different integer ids, or 0 if the label does not exist 6818c58f1c22SToby Isaac 6819c58f1c22SToby Isaac Level: beginner 6820c58f1c22SToby Isaac 6821*73ff1848SBarry Smith Developer Note: 6822bb7acecfSBarry Smith This should be renamed to something like `DMGetLabelNumValues()` or removed. 6823bb7acecfSBarry Smith 68241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetNumValues()`, `DMSetLabelValue()`, `DMGetLabel()` 6825c58f1c22SToby Isaac @*/ 6826d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelSize(DM dm, const char name[], PetscInt *size) 6827d71ae5a4SJacob Faibussowitsch { 6828c58f1c22SToby Isaac DMLabel label; 6829c58f1c22SToby Isaac 6830c58f1c22SToby Isaac PetscFunctionBegin; 6831c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68324f572ea9SToby Isaac PetscAssertPointer(name, 2); 68334f572ea9SToby Isaac PetscAssertPointer(size, 3); 68349566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6835c58f1c22SToby Isaac *size = 0; 68363ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 68379566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, size)); 68383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6839c58f1c22SToby Isaac } 6840c58f1c22SToby Isaac 6841c58f1c22SToby Isaac /*@C 6842bb7acecfSBarry Smith DMGetLabelIdIS - Get the `DMLabelGetValueIS()` from a `DMLabel` in the `DM` 6843c58f1c22SToby Isaac 6844c58f1c22SToby Isaac Not Collective 6845c58f1c22SToby Isaac 6846c58f1c22SToby Isaac Input Parameters: 684760225df5SJacob Faibussowitsch + dm - The `DM` object 6848c58f1c22SToby Isaac - name - The label name 6849c58f1c22SToby Isaac 6850c58f1c22SToby Isaac Output Parameter: 685120f4b53cSBarry Smith . ids - The integer ids, or `NULL` if the label does not exist 6852c58f1c22SToby Isaac 6853c58f1c22SToby Isaac Level: beginner 6854c58f1c22SToby Isaac 68551cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetValueIS()`, `DMGetLabelSize()` 6856c58f1c22SToby Isaac @*/ 6857d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelIdIS(DM dm, const char name[], IS *ids) 6858d71ae5a4SJacob Faibussowitsch { 6859c58f1c22SToby Isaac DMLabel label; 6860c58f1c22SToby Isaac 6861c58f1c22SToby Isaac PetscFunctionBegin; 6862c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68634f572ea9SToby Isaac PetscAssertPointer(name, 2); 68644f572ea9SToby Isaac PetscAssertPointer(ids, 3); 68659566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6866c58f1c22SToby Isaac *ids = NULL; 6867dab2e251SBlaise Bourdin if (label) { 68689566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, ids)); 6869dab2e251SBlaise Bourdin } else { 6870dab2e251SBlaise Bourdin /* returning an empty IS */ 68719566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 0, NULL, PETSC_USE_POINTER, ids)); 6872dab2e251SBlaise Bourdin } 68733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6874c58f1c22SToby Isaac } 6875c58f1c22SToby Isaac 6876c58f1c22SToby Isaac /*@C 6877c58f1c22SToby Isaac DMGetStratumSize - Get the number of points in a label stratum 6878c58f1c22SToby Isaac 6879c58f1c22SToby Isaac Not Collective 6880c58f1c22SToby Isaac 6881c58f1c22SToby Isaac Input Parameters: 6882bb7acecfSBarry Smith + dm - The `DM` object 6883c58f1c22SToby Isaac . name - The label name 6884c58f1c22SToby Isaac - value - The stratum value 6885c58f1c22SToby Isaac 6886c58f1c22SToby Isaac Output Parameter: 6887bb7acecfSBarry Smith . size - The number of points, also called the stratum size 6888c58f1c22SToby Isaac 6889c58f1c22SToby Isaac Level: beginner 6890c58f1c22SToby Isaac 68911cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumSize()`, `DMGetLabelSize()`, `DMGetLabelIds()` 6892c58f1c22SToby Isaac @*/ 6893d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumSize(DM dm, const char name[], PetscInt value, PetscInt *size) 6894d71ae5a4SJacob Faibussowitsch { 6895c58f1c22SToby Isaac DMLabel label; 6896c58f1c22SToby Isaac 6897c58f1c22SToby Isaac PetscFunctionBegin; 6898c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 68994f572ea9SToby Isaac PetscAssertPointer(name, 2); 69004f572ea9SToby Isaac PetscAssertPointer(size, 4); 69019566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6902c58f1c22SToby Isaac *size = 0; 69033ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69049566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumSize(label, value, size)); 69053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6906c58f1c22SToby Isaac } 6907c58f1c22SToby Isaac 6908c58f1c22SToby Isaac /*@C 6909c58f1c22SToby Isaac DMGetStratumIS - Get the points in a label stratum 6910c58f1c22SToby Isaac 6911c58f1c22SToby Isaac Not Collective 6912c58f1c22SToby Isaac 6913c58f1c22SToby Isaac Input Parameters: 6914bb7acecfSBarry Smith + dm - The `DM` object 6915c58f1c22SToby Isaac . name - The label name 6916c58f1c22SToby Isaac - value - The stratum value 6917c58f1c22SToby Isaac 6918c58f1c22SToby Isaac Output Parameter: 691920f4b53cSBarry Smith . points - The stratum points, or `NULL` if the label does not exist or does not have that value 6920c58f1c22SToby Isaac 6921c58f1c22SToby Isaac Level: beginner 6922c58f1c22SToby Isaac 69231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabelGetStratumIS()`, `DMGetStratumSize()` 6924c58f1c22SToby Isaac @*/ 6925d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetStratumIS(DM dm, const char name[], PetscInt value, IS *points) 6926d71ae5a4SJacob Faibussowitsch { 6927c58f1c22SToby Isaac DMLabel label; 6928c58f1c22SToby Isaac 6929c58f1c22SToby Isaac PetscFunctionBegin; 6930c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69314f572ea9SToby Isaac PetscAssertPointer(name, 2); 69324f572ea9SToby Isaac PetscAssertPointer(points, 4); 69339566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 6934c58f1c22SToby Isaac *points = NULL; 69353ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69369566063dSJacob Faibussowitsch PetscCall(DMLabelGetStratumIS(label, value, points)); 69373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6938c58f1c22SToby Isaac } 6939c58f1c22SToby Isaac 69404de306b1SToby Isaac /*@C 69419044fa66SMatthew G. Knepley DMSetStratumIS - Set the points in a label stratum 69424de306b1SToby Isaac 69434de306b1SToby Isaac Not Collective 69444de306b1SToby Isaac 69454de306b1SToby Isaac Input Parameters: 6946bb7acecfSBarry Smith + dm - The `DM` object 69474de306b1SToby Isaac . name - The label name 69484de306b1SToby Isaac . value - The stratum value 69494de306b1SToby Isaac - points - The stratum points 69504de306b1SToby Isaac 69514de306b1SToby Isaac Level: beginner 69524de306b1SToby Isaac 69531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMClearLabelStratum()`, `DMLabelClearStratum()`, `DMLabelSetStratumIS()`, `DMGetStratumSize()` 69544de306b1SToby Isaac @*/ 6955d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetStratumIS(DM dm, const char name[], PetscInt value, IS points) 6956d71ae5a4SJacob Faibussowitsch { 69574de306b1SToby Isaac DMLabel label; 69584de306b1SToby Isaac 69594de306b1SToby Isaac PetscFunctionBegin; 69604de306b1SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69614f572ea9SToby Isaac PetscAssertPointer(name, 2); 6962292bffcbSToby Isaac PetscValidHeaderSpecific(points, IS_CLASSID, 4); 69639566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69643ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69659566063dSJacob Faibussowitsch PetscCall(DMLabelSetStratumIS(label, value, points)); 69663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69674de306b1SToby Isaac } 69684de306b1SToby Isaac 6969c58f1c22SToby Isaac /*@C 6970bb7acecfSBarry Smith DMClearLabelStratum - Remove all points from a stratum from a `DMLabel` 6971c58f1c22SToby Isaac 6972c58f1c22SToby Isaac Not Collective 6973c58f1c22SToby Isaac 6974c58f1c22SToby Isaac Input Parameters: 6975bb7acecfSBarry Smith + dm - The `DM` object 6976c58f1c22SToby Isaac . name - The label name 6977c58f1c22SToby Isaac - value - The label value for this point 6978c58f1c22SToby Isaac 6979c58f1c22SToby Isaac Output Parameter: 6980c58f1c22SToby Isaac 6981c58f1c22SToby Isaac Level: beginner 6982c58f1c22SToby Isaac 69831cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMLabelClearStratum()`, `DMSetLabelValue()`, `DMGetStratumIS()`, `DMClearLabelValue()` 6984c58f1c22SToby Isaac @*/ 6985d71ae5a4SJacob Faibussowitsch PetscErrorCode DMClearLabelStratum(DM dm, const char name[], PetscInt value) 6986d71ae5a4SJacob Faibussowitsch { 6987c58f1c22SToby Isaac DMLabel label; 6988c58f1c22SToby Isaac 6989c58f1c22SToby Isaac PetscFunctionBegin; 6990c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 69914f572ea9SToby Isaac PetscAssertPointer(name, 2); 69929566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, &label)); 69933ba16761SJacob Faibussowitsch if (!label) PetscFunctionReturn(PETSC_SUCCESS); 69949566063dSJacob Faibussowitsch PetscCall(DMLabelClearStratum(label, value)); 69953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6996c58f1c22SToby Isaac } 6997c58f1c22SToby Isaac 6998c58f1c22SToby Isaac /*@ 6999bb7acecfSBarry Smith DMGetNumLabels - Return the number of labels defined by on the `DM` 7000c58f1c22SToby Isaac 7001c58f1c22SToby Isaac Not Collective 7002c58f1c22SToby Isaac 7003c58f1c22SToby Isaac Input Parameter: 7004bb7acecfSBarry Smith . dm - The `DM` object 7005c58f1c22SToby Isaac 7006c58f1c22SToby Isaac Output Parameter: 7007c58f1c22SToby Isaac . numLabels - the number of Labels 7008c58f1c22SToby Isaac 7009c58f1c22SToby Isaac Level: intermediate 7010c58f1c22SToby Isaac 70111cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabelName()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7012c58f1c22SToby Isaac @*/ 7013d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumLabels(DM dm, PetscInt *numLabels) 7014d71ae5a4SJacob Faibussowitsch { 70155d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7016c58f1c22SToby Isaac PetscInt n = 0; 7017c58f1c22SToby Isaac 7018c58f1c22SToby Isaac PetscFunctionBegin; 7019c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70204f572ea9SToby Isaac PetscAssertPointer(numLabels, 2); 70219371c9d4SSatish Balay while (next) { 70229371c9d4SSatish Balay ++n; 70239371c9d4SSatish Balay next = next->next; 70249371c9d4SSatish Balay } 7025c58f1c22SToby Isaac *numLabels = n; 70263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7027c58f1c22SToby Isaac } 7028c58f1c22SToby Isaac 7029c58f1c22SToby Isaac /*@C 7030c58f1c22SToby Isaac DMGetLabelName - Return the name of nth label 7031c58f1c22SToby Isaac 7032c58f1c22SToby Isaac Not Collective 7033c58f1c22SToby Isaac 7034c58f1c22SToby Isaac Input Parameters: 7035bb7acecfSBarry Smith + dm - The `DM` object 7036c58f1c22SToby Isaac - n - the label number 7037c58f1c22SToby Isaac 7038c58f1c22SToby Isaac Output Parameter: 7039c58f1c22SToby Isaac . name - the label name 7040c58f1c22SToby Isaac 7041c58f1c22SToby Isaac Level: intermediate 7042c58f1c22SToby Isaac 7043*73ff1848SBarry Smith Developer Note: 7044bb7acecfSBarry Smith Some of the functions that appropriate on labels using their number have the suffix ByNum, others do not. 7045bb7acecfSBarry Smith 70461cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabelByNum()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7047c58f1c22SToby Isaac @*/ 7048d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelName(DM dm, PetscInt n, const char **name) 7049d71ae5a4SJacob Faibussowitsch { 70505d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7051c58f1c22SToby Isaac PetscInt l = 0; 7052c58f1c22SToby Isaac 7053c58f1c22SToby Isaac PetscFunctionBegin; 7054c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70554f572ea9SToby Isaac PetscAssertPointer(name, 3); 7056c58f1c22SToby Isaac while (next) { 7057c58f1c22SToby Isaac if (l == n) { 70589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, name)); 70593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7060c58f1c22SToby Isaac } 7061c58f1c22SToby Isaac ++l; 7062c58f1c22SToby Isaac next = next->next; 7063c58f1c22SToby Isaac } 706463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7065c58f1c22SToby Isaac } 7066c58f1c22SToby Isaac 7067c58f1c22SToby Isaac /*@C 7068bb7acecfSBarry Smith DMHasLabel - Determine whether the `DM` has a label of a given name 7069c58f1c22SToby Isaac 7070c58f1c22SToby Isaac Not Collective 7071c58f1c22SToby Isaac 7072c58f1c22SToby Isaac Input Parameters: 7073bb7acecfSBarry Smith + dm - The `DM` object 7074c58f1c22SToby Isaac - name - The label name 7075c58f1c22SToby Isaac 7076c58f1c22SToby Isaac Output Parameter: 7077bb7acecfSBarry Smith . hasLabel - `PETSC_TRUE` if the label is present 7078c58f1c22SToby Isaac 7079c58f1c22SToby Isaac Level: intermediate 7080c58f1c22SToby Isaac 70811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetLabel()`, `DMGetLabelByNum()`, `DMCreateLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7082c58f1c22SToby Isaac @*/ 7083d71ae5a4SJacob Faibussowitsch PetscErrorCode DMHasLabel(DM dm, const char name[], PetscBool *hasLabel) 7084d71ae5a4SJacob Faibussowitsch { 70855d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7086d67d17b1SMatthew G. Knepley const char *lname; 7087c58f1c22SToby Isaac 7088c58f1c22SToby Isaac PetscFunctionBegin; 7089c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 70904f572ea9SToby Isaac PetscAssertPointer(name, 2); 70914f572ea9SToby Isaac PetscAssertPointer(hasLabel, 3); 7092c58f1c22SToby Isaac *hasLabel = PETSC_FALSE; 7093c58f1c22SToby Isaac while (next) { 70949566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 70959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, hasLabel)); 7096c58f1c22SToby Isaac if (*hasLabel) break; 7097c58f1c22SToby Isaac next = next->next; 7098c58f1c22SToby Isaac } 70993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7100c58f1c22SToby Isaac } 7101c58f1c22SToby Isaac 7102a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7103c58f1c22SToby Isaac /*@C 710420f4b53cSBarry Smith DMGetLabel - Return the label of a given name, or `NULL`, from a `DM` 7105c58f1c22SToby Isaac 7106c58f1c22SToby Isaac Not Collective 7107c58f1c22SToby Isaac 7108c58f1c22SToby Isaac Input Parameters: 7109bb7acecfSBarry Smith + dm - The `DM` object 7110c58f1c22SToby Isaac - name - The label name 7111c58f1c22SToby Isaac 7112c58f1c22SToby Isaac Output Parameter: 711320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent 7114c58f1c22SToby Isaac 7115bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7116bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7117bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7118bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7119bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7120bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7121bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 71226d7c9049SMatthew G. Knepley 7123c58f1c22SToby Isaac Level: intermediate 7124c58f1c22SToby Isaac 712560225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMHasLabel()`, `DMGetLabelByNum()`, `DMAddLabel()`, `DMCreateLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 7126c58f1c22SToby Isaac @*/ 7127d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabel(DM dm, const char name[], DMLabel *label) 7128d71ae5a4SJacob Faibussowitsch { 71295d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7130c58f1c22SToby Isaac PetscBool hasLabel; 7131d67d17b1SMatthew G. Knepley const char *lname; 7132c58f1c22SToby Isaac 7133c58f1c22SToby Isaac PetscFunctionBegin; 7134c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71354f572ea9SToby Isaac PetscAssertPointer(name, 2); 71364f572ea9SToby Isaac PetscAssertPointer(label, 3); 7137c58f1c22SToby Isaac *label = NULL; 7138c58f1c22SToby Isaac while (next) { 71399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 71409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7141c58f1c22SToby Isaac if (hasLabel) { 7142c58f1c22SToby Isaac *label = next->label; 7143c58f1c22SToby Isaac break; 7144c58f1c22SToby Isaac } 7145c58f1c22SToby Isaac next = next->next; 7146c58f1c22SToby Isaac } 71473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7148c58f1c22SToby Isaac } 7149c58f1c22SToby Isaac 7150c58f1c22SToby Isaac /*@C 7151bb7acecfSBarry Smith DMGetLabelByNum - Return the nth label on a `DM` 7152c58f1c22SToby Isaac 7153c58f1c22SToby Isaac Not Collective 7154c58f1c22SToby Isaac 7155c58f1c22SToby Isaac Input Parameters: 7156bb7acecfSBarry Smith + dm - The `DM` object 7157c58f1c22SToby Isaac - n - the label number 7158c58f1c22SToby Isaac 7159c58f1c22SToby Isaac Output Parameter: 7160c58f1c22SToby Isaac . label - the label 7161c58f1c22SToby Isaac 7162c58f1c22SToby Isaac Level: intermediate 7163c58f1c22SToby Isaac 71641cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7165c58f1c22SToby Isaac @*/ 7166d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelByNum(DM dm, PetscInt n, DMLabel *label) 7167d71ae5a4SJacob Faibussowitsch { 71685d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7169c58f1c22SToby Isaac PetscInt l = 0; 7170c58f1c22SToby Isaac 7171c58f1c22SToby Isaac PetscFunctionBegin; 7172c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 71734f572ea9SToby Isaac PetscAssertPointer(label, 3); 7174c58f1c22SToby Isaac while (next) { 7175c58f1c22SToby Isaac if (l == n) { 7176c58f1c22SToby Isaac *label = next->label; 71773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7178c58f1c22SToby Isaac } 7179c58f1c22SToby Isaac ++l; 7180c58f1c22SToby Isaac next = next->next; 7181c58f1c22SToby Isaac } 718263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %" PetscInt_FMT " does not exist in this DM", n); 7183c58f1c22SToby Isaac } 7184c58f1c22SToby Isaac 7185c58f1c22SToby Isaac /*@C 7186bb7acecfSBarry Smith DMAddLabel - Add the label to this `DM` 7187c58f1c22SToby Isaac 7188c58f1c22SToby Isaac Not Collective 7189c58f1c22SToby Isaac 7190c58f1c22SToby Isaac Input Parameters: 7191bb7acecfSBarry Smith + dm - The `DM` object 7192bb7acecfSBarry Smith - label - The `DMLabel` 7193c58f1c22SToby Isaac 7194c58f1c22SToby Isaac Level: developer 7195c58f1c22SToby Isaac 719660225df5SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7197c58f1c22SToby Isaac @*/ 7198d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddLabel(DM dm, DMLabel label) 7199d71ae5a4SJacob Faibussowitsch { 72005d80c0bfSVaclav Hapla DMLabelLink l, *p, tmpLabel; 7201c58f1c22SToby Isaac PetscBool hasLabel; 7202d67d17b1SMatthew G. Knepley const char *lname; 72035d80c0bfSVaclav Hapla PetscBool flg; 7204c58f1c22SToby Isaac 7205c58f1c22SToby Isaac PetscFunctionBegin; 7206c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72079566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &lname)); 72089566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, lname, &hasLabel)); 72097a8be351SBarry Smith PetscCheck(!hasLabel, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in this DM", lname); 72109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1, &tmpLabel)); 7211c58f1c22SToby Isaac tmpLabel->label = label; 7212c58f1c22SToby Isaac tmpLabel->output = PETSC_TRUE; 72135d80c0bfSVaclav Hapla for (p = &dm->labels; (l = *p); p = &l->next) { } 72145d80c0bfSVaclav Hapla *p = tmpLabel; 72159566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72169566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72175d80c0bfSVaclav Hapla if (flg) dm->depthLabel = label; 72189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 7219ba2698f1SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7221c58f1c22SToby Isaac } 7222c58f1c22SToby Isaac 7223a4e35b19SJacob Faibussowitsch // PetscClangLinter pragma ignore: -fdoc-section-header-unknown 7224c58f1c22SToby Isaac /*@C 72254a7ee7d0SMatthew G. Knepley DMSetLabel - Replaces the label of a given name, or ignores it if the name is not present 72264a7ee7d0SMatthew G. Knepley 72274a7ee7d0SMatthew G. Knepley Not Collective 72284a7ee7d0SMatthew G. Knepley 72294a7ee7d0SMatthew G. Knepley Input Parameters: 7230bb7acecfSBarry Smith + dm - The `DM` object 7231bb7acecfSBarry Smith - label - The `DMLabel`, having the same name, to substitute 72324a7ee7d0SMatthew G. Knepley 7233bb7acecfSBarry Smith Default labels in a `DMPLEX`: 7234bb7acecfSBarry Smith + "depth" - Holds the depth (co-dimension) of each mesh point 7235bb7acecfSBarry Smith . "celltype" - Holds the topological type of each cell 7236bb7acecfSBarry Smith . "ghost" - If the DM is distributed with overlap, this marks the cells and faces in the overlap 7237bb7acecfSBarry Smith . "Cell Sets" - Mirrors the cell sets defined by GMsh and ExodusII 7238bb7acecfSBarry Smith . "Face Sets" - Mirrors the face sets defined by GMsh and ExodusII 7239bb7acecfSBarry Smith - "Vertex Sets" - Mirrors the vertex sets defined by GMsh 72404a7ee7d0SMatthew G. Knepley 72414a7ee7d0SMatthew G. Knepley Level: intermediate 72424a7ee7d0SMatthew G. Knepley 72431cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMPlexGetDepthLabel()`, `DMPlexGetCellType()` 72444a7ee7d0SMatthew G. Knepley @*/ 7245d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabel(DM dm, DMLabel label) 7246d71ae5a4SJacob Faibussowitsch { 72474a7ee7d0SMatthew G. Knepley DMLabelLink next = dm->labels; 72484a7ee7d0SMatthew G. Knepley PetscBool hasLabel, flg; 72494a7ee7d0SMatthew G. Knepley const char *name, *lname; 72504a7ee7d0SMatthew G. Knepley 72514a7ee7d0SMatthew G. Knepley PetscFunctionBegin; 72524a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72534a7ee7d0SMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 72549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 72554a7ee7d0SMatthew G. Knepley while (next) { 72569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 72579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 72584a7ee7d0SMatthew G. Knepley if (hasLabel) { 72599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)label)); 72609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "depth", &flg)); 72614a7ee7d0SMatthew G. Knepley if (flg) dm->depthLabel = label; 72629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(lname, "celltype", &flg)); 72634a7ee7d0SMatthew G. Knepley if (flg) dm->celltypeLabel = label; 72649566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&next->label)); 72654a7ee7d0SMatthew G. Knepley next->label = label; 72664a7ee7d0SMatthew G. Knepley break; 72674a7ee7d0SMatthew G. Knepley } 72684a7ee7d0SMatthew G. Knepley next = next->next; 72694a7ee7d0SMatthew G. Knepley } 72703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72714a7ee7d0SMatthew G. Knepley } 72724a7ee7d0SMatthew G. Knepley 72734a7ee7d0SMatthew G. Knepley /*@C 7274bb7acecfSBarry Smith DMRemoveLabel - Remove the label given by name from this `DM` 7275c58f1c22SToby Isaac 7276c58f1c22SToby Isaac Not Collective 7277c58f1c22SToby Isaac 7278c58f1c22SToby Isaac Input Parameters: 7279bb7acecfSBarry Smith + dm - The `DM` object 7280c58f1c22SToby Isaac - name - The label name 7281c58f1c22SToby Isaac 7282c58f1c22SToby Isaac Output Parameter: 728320f4b53cSBarry Smith . label - The `DMLabel`, or `NULL` if the label is absent. Pass in `NULL` to call `DMLabelDestroy()` on the label, otherwise the 7284bb7acecfSBarry Smith caller is responsible for calling `DMLabelDestroy()`. 7285c58f1c22SToby Isaac 7286c58f1c22SToby Isaac Level: developer 7287c58f1c22SToby Isaac 72881cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabelBySelf()` 7289c58f1c22SToby Isaac @*/ 7290d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabel(DM dm, const char name[], DMLabel *label) 7291d71ae5a4SJacob Faibussowitsch { 729295d578d6SVaclav Hapla DMLabelLink link, *pnext; 7293c58f1c22SToby Isaac PetscBool hasLabel; 7294d67d17b1SMatthew G. Knepley const char *lname; 7295c58f1c22SToby Isaac 7296c58f1c22SToby Isaac PetscFunctionBegin; 7297c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 72984f572ea9SToby Isaac PetscAssertPointer(name, 2); 7299e5472504SVaclav Hapla if (label) { 73004f572ea9SToby Isaac PetscAssertPointer(label, 3); 7301c58f1c22SToby Isaac *label = NULL; 7302e5472504SVaclav Hapla } 73035d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 73049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)link->label, &lname)); 73059566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &hasLabel)); 7306c58f1c22SToby Isaac if (hasLabel) { 730795d578d6SVaclav Hapla *pnext = link->next; /* Remove from list */ 73089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &hasLabel)); 730995d578d6SVaclav Hapla if (hasLabel) dm->depthLabel = NULL; 73109566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &hasLabel)); 7311ba2698f1SMatthew G. Knepley if (hasLabel) dm->celltypeLabel = NULL; 731295d578d6SVaclav Hapla if (label) *label = link->label; 73139566063dSJacob Faibussowitsch else PetscCall(DMLabelDestroy(&link->label)); 73149566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7315c58f1c22SToby Isaac break; 7316c58f1c22SToby Isaac } 7317c58f1c22SToby Isaac } 73183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7319c58f1c22SToby Isaac } 7320c58f1c22SToby Isaac 7321306894acSVaclav Hapla /*@ 7322bb7acecfSBarry Smith DMRemoveLabelBySelf - Remove the label from this `DM` 7323306894acSVaclav Hapla 7324306894acSVaclav Hapla Not Collective 7325306894acSVaclav Hapla 7326306894acSVaclav Hapla Input Parameters: 7327bb7acecfSBarry Smith + dm - The `DM` object 7328bb7acecfSBarry Smith . label - The `DMLabel` to be removed from the `DM` 732920f4b53cSBarry Smith - failNotFound - Should it fail if the label is not found in the `DM`? 7330306894acSVaclav Hapla 7331306894acSVaclav Hapla Level: developer 7332306894acSVaclav Hapla 7333bb7acecfSBarry Smith Note: 7334306894acSVaclav Hapla Only exactly the same instance is removed if found, name match is ignored. 7335bb7acecfSBarry Smith If the `DM` has an exclusive reference to the label, the label gets destroyed and 7336306894acSVaclav Hapla *label nullified. 7337306894acSVaclav Hapla 73381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabel()` `DMGetLabelValue()`, `DMSetLabelValue()`, `DMLabelDestroy()`, `DMRemoveLabel()` 7339306894acSVaclav Hapla @*/ 7340d71ae5a4SJacob Faibussowitsch PetscErrorCode DMRemoveLabelBySelf(DM dm, DMLabel *label, PetscBool failNotFound) 7341d71ae5a4SJacob Faibussowitsch { 734243e45a93SVaclav Hapla DMLabelLink link, *pnext; 7343306894acSVaclav Hapla PetscBool hasLabel = PETSC_FALSE; 7344306894acSVaclav Hapla 7345306894acSVaclav Hapla PetscFunctionBegin; 7346306894acSVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73474f572ea9SToby Isaac PetscAssertPointer(label, 2); 73483ba16761SJacob Faibussowitsch if (!*label && !failNotFound) PetscFunctionReturn(PETSC_SUCCESS); 7349306894acSVaclav Hapla PetscValidHeaderSpecific(*label, DMLABEL_CLASSID, 2); 7350306894acSVaclav Hapla PetscValidLogicalCollectiveBool(dm, failNotFound, 3); 73515d80c0bfSVaclav Hapla for (pnext = &dm->labels; (link = *pnext); pnext = &link->next) { 735243e45a93SVaclav Hapla if (*label == link->label) { 7353306894acSVaclav Hapla hasLabel = PETSC_TRUE; 735443e45a93SVaclav Hapla *pnext = link->next; /* Remove from list */ 7355306894acSVaclav Hapla if (*label == dm->depthLabel) dm->depthLabel = NULL; 7356ba2698f1SMatthew G. Knepley if (*label == dm->celltypeLabel) dm->celltypeLabel = NULL; 735743e45a93SVaclav Hapla if (((PetscObject)link->label)->refct < 2) *label = NULL; /* nullify if exclusive reference */ 73589566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&link->label)); 73599566063dSJacob Faibussowitsch PetscCall(PetscFree(link)); 7360306894acSVaclav Hapla break; 7361306894acSVaclav Hapla } 7362306894acSVaclav Hapla } 73637a8be351SBarry Smith PetscCheck(hasLabel || !failNotFound, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Given label not found in DM"); 73643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7365306894acSVaclav Hapla } 7366306894acSVaclav Hapla 7367c58f1c22SToby Isaac /*@C 7368c58f1c22SToby Isaac DMGetLabelOutput - Get the output flag for a given label 7369c58f1c22SToby Isaac 7370c58f1c22SToby Isaac Not Collective 7371c58f1c22SToby Isaac 7372c58f1c22SToby Isaac Input Parameters: 7373bb7acecfSBarry Smith + dm - The `DM` object 7374c58f1c22SToby Isaac - name - The label name 7375c58f1c22SToby Isaac 7376c58f1c22SToby Isaac Output Parameter: 7377c58f1c22SToby Isaac . output - The flag for output 7378c58f1c22SToby Isaac 7379c58f1c22SToby Isaac Level: developer 7380c58f1c22SToby Isaac 73811cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMSetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7382c58f1c22SToby Isaac @*/ 7383d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetLabelOutput(DM dm, const char name[], PetscBool *output) 7384d71ae5a4SJacob Faibussowitsch { 73855d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7386d67d17b1SMatthew G. Knepley const char *lname; 7387c58f1c22SToby Isaac 7388c58f1c22SToby Isaac PetscFunctionBegin; 7389c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 73904f572ea9SToby Isaac PetscAssertPointer(name, 2); 73914f572ea9SToby Isaac PetscAssertPointer(output, 3); 7392c58f1c22SToby Isaac while (next) { 7393c58f1c22SToby Isaac PetscBool flg; 7394c58f1c22SToby Isaac 73959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 73969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 73979371c9d4SSatish Balay if (flg) { 73989371c9d4SSatish Balay *output = next->output; 73993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74009371c9d4SSatish Balay } 7401c58f1c22SToby Isaac next = next->next; 7402c58f1c22SToby Isaac } 740398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7404c58f1c22SToby Isaac } 7405c58f1c22SToby Isaac 7406c58f1c22SToby Isaac /*@C 7407bb7acecfSBarry Smith DMSetLabelOutput - Set if a given label should be saved to a `PetscViewer` in calls to `DMView()` 7408c58f1c22SToby Isaac 7409c58f1c22SToby Isaac Not Collective 7410c58f1c22SToby Isaac 7411c58f1c22SToby Isaac Input Parameters: 7412bb7acecfSBarry Smith + dm - The `DM` object 7413c58f1c22SToby Isaac . name - The label name 7414bb7acecfSBarry Smith - output - `PETSC_TRUE` to save the label to the viewer 7415c58f1c22SToby Isaac 7416c58f1c22SToby Isaac Level: developer 7417c58f1c22SToby Isaac 74181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMGetOutputFlag()`, `DMGetLabelOutput()`, `DMCreateLabel()`, `DMHasLabel()`, `DMGetLabelValue()`, `DMSetLabelValue()`, `DMGetStratumIS()` 7419c58f1c22SToby Isaac @*/ 7420d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelOutput(DM dm, const char name[], PetscBool output) 7421d71ae5a4SJacob Faibussowitsch { 74225d80c0bfSVaclav Hapla DMLabelLink next = dm->labels; 7423d67d17b1SMatthew G. Knepley const char *lname; 7424c58f1c22SToby Isaac 7425c58f1c22SToby Isaac PetscFunctionBegin; 7426c58f1c22SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 74274f572ea9SToby Isaac PetscAssertPointer(name, 2); 7428c58f1c22SToby Isaac while (next) { 7429c58f1c22SToby Isaac PetscBool flg; 7430c58f1c22SToby Isaac 74319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)next->label, &lname)); 74329566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, lname, &flg)); 74339371c9d4SSatish Balay if (flg) { 74349371c9d4SSatish Balay next->output = output; 74353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 74369371c9d4SSatish Balay } 7437c58f1c22SToby Isaac next = next->next; 7438c58f1c22SToby Isaac } 743998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "No label named %s was present in this dm", name); 7440c58f1c22SToby Isaac } 7441c58f1c22SToby Isaac 7442c58f1c22SToby Isaac /*@ 7443bb7acecfSBarry Smith DMCopyLabels - Copy labels from one `DM` mesh to another `DM` with a superset of the points 7444c58f1c22SToby Isaac 744520f4b53cSBarry Smith Collective 7446c58f1c22SToby Isaac 7447d8d19677SJose E. Roman Input Parameters: 7448bb7acecfSBarry Smith + dmA - The `DM` object with initial labels 7449bb7acecfSBarry Smith . dmB - The `DM` object to which labels are copied 7450bb7acecfSBarry Smith . mode - Copy labels by pointers (`PETSC_OWN_POINTER`) or duplicate them (`PETSC_COPY_VALUES`) 7451bb7acecfSBarry Smith . all - Copy all labels including "depth", "dim", and "celltype" (`PETSC_TRUE`) which are otherwise ignored (`PETSC_FALSE`) 7452bb7acecfSBarry Smith - emode - How to behave when a `DMLabel` in the source and destination `DM`s with the same name is encountered (see `DMCopyLabelsMode`) 7453c58f1c22SToby Isaac 7454c58f1c22SToby Isaac Level: intermediate 7455c58f1c22SToby Isaac 7456bb7acecfSBarry Smith Note: 74572cbb9b06SVaclav Hapla This is typically used when interpolating or otherwise adding to a mesh, or testing. 7458c58f1c22SToby Isaac 74591cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode` 7460c58f1c22SToby Isaac @*/ 7461d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyLabels(DM dmA, DM dmB, PetscCopyMode mode, PetscBool all, DMCopyLabelsMode emode) 7462d71ae5a4SJacob Faibussowitsch { 74632cbb9b06SVaclav Hapla DMLabel label, labelNew, labelOld; 7464c58f1c22SToby Isaac const char *name; 7465c58f1c22SToby Isaac PetscBool flg; 74665d80c0bfSVaclav Hapla DMLabelLink link; 7467c58f1c22SToby Isaac 74685d80c0bfSVaclav Hapla PetscFunctionBegin; 74695d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 74705d80c0bfSVaclav Hapla PetscValidHeaderSpecific(dmB, DM_CLASSID, 2); 74715d80c0bfSVaclav Hapla PetscValidLogicalCollectiveEnum(dmA, mode, 3); 74725d80c0bfSVaclav Hapla PetscValidLogicalCollectiveBool(dmA, all, 4); 74737a8be351SBarry Smith PetscCheck(mode != PETSC_USE_POINTER, PetscObjectComm((PetscObject)dmA), PETSC_ERR_SUP, "PETSC_USE_POINTER not supported for objects"); 74743ba16761SJacob Faibussowitsch if (dmA == dmB) PetscFunctionReturn(PETSC_SUCCESS); 74755d80c0bfSVaclav Hapla for (link = dmA->labels; link; link = link->next) { 74765d80c0bfSVaclav Hapla label = link->label; 74779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)label, &name)); 74785d80c0bfSVaclav Hapla if (!all) { 74799566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "depth", &flg)); 7480c58f1c22SToby Isaac if (flg) continue; 74819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "dim", &flg)); 74827d5acc75SStefano Zampini if (flg) continue; 74839566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, "celltype", &flg)); 7484ba2698f1SMatthew G. Knepley if (flg) continue; 74855d80c0bfSVaclav Hapla } 74869566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dmB, name, &labelOld)); 74872cbb9b06SVaclav Hapla if (labelOld) { 74882cbb9b06SVaclav Hapla switch (emode) { 7489d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_KEEP: 7490d71ae5a4SJacob Faibussowitsch continue; 7491d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_REPLACE: 7492d71ae5a4SJacob Faibussowitsch PetscCall(DMRemoveLabelBySelf(dmB, &labelOld, PETSC_TRUE)); 7493d71ae5a4SJacob Faibussowitsch break; 7494d71ae5a4SJacob Faibussowitsch case DM_COPY_LABELS_FAIL: 7495d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Label %s already exists in destination DM", name); 7496d71ae5a4SJacob Faibussowitsch default: 7497d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)dmA), PETSC_ERR_ARG_OUTOFRANGE, "Unhandled DMCopyLabelsMode %d", (int)emode); 74982cbb9b06SVaclav Hapla } 74992cbb9b06SVaclav Hapla } 75005d80c0bfSVaclav Hapla if (mode == PETSC_COPY_VALUES) { 75019566063dSJacob Faibussowitsch PetscCall(DMLabelDuplicate(label, &labelNew)); 75025d80c0bfSVaclav Hapla } else { 75035d80c0bfSVaclav Hapla labelNew = label; 75045d80c0bfSVaclav Hapla } 75059566063dSJacob Faibussowitsch PetscCall(DMAddLabel(dmB, labelNew)); 75069566063dSJacob Faibussowitsch if (mode == PETSC_COPY_VALUES) PetscCall(DMLabelDestroy(&labelNew)); 7507c58f1c22SToby Isaac } 75083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7509c58f1c22SToby Isaac } 7510461a15a0SLisandro Dalcin 7511609dae6eSVaclav Hapla /*@C 7512b4028c23SStefano Zampini DMCompareLabels - Compare labels between two `DM` objects 7513609dae6eSVaclav Hapla 751420f4b53cSBarry Smith Collective; No Fortran Support 7515609dae6eSVaclav Hapla 7516609dae6eSVaclav Hapla Input Parameters: 7517bb7acecfSBarry Smith + dm0 - First `DM` object 7518bb7acecfSBarry Smith - dm1 - Second `DM` object 7519609dae6eSVaclav Hapla 7520a4e35b19SJacob Faibussowitsch Output Parameters: 75215efe38ccSVaclav Hapla + equal - (Optional) Flag whether labels of dm0 and dm1 are the same 752220f4b53cSBarry Smith - message - (Optional) Message describing the difference, or `NULL` if there is no difference 7523609dae6eSVaclav Hapla 7524609dae6eSVaclav Hapla Level: intermediate 7525609dae6eSVaclav Hapla 7526609dae6eSVaclav Hapla Notes: 7527bb7acecfSBarry Smith The output flag equal will be the same on all processes. 7528bb7acecfSBarry Smith 752920f4b53cSBarry Smith If equal is passed as `NULL` and difference is found, an error is thrown on all processes. 7530bb7acecfSBarry Smith 753120f4b53cSBarry Smith Make sure to pass equal is `NULL` on all processes or none of them. 7532609dae6eSVaclav Hapla 75335efe38ccSVaclav Hapla The output message is set independently on each rank. 7534bb7acecfSBarry Smith 7535bb7acecfSBarry Smith message must be freed with `PetscFree()` 7536bb7acecfSBarry Smith 753720f4b53cSBarry Smith If message is passed as `NULL` and a difference is found, the difference description is printed to stderr in synchronized manner. 7538bb7acecfSBarry Smith 753920f4b53cSBarry Smith Make sure to pass message as `NULL` on all processes or no processes. 7540609dae6eSVaclav Hapla 7541609dae6eSVaclav Hapla Labels are matched by name. If the number of labels and their names are equal, 7542bb7acecfSBarry Smith `DMLabelCompare()` is used to compare each pair of labels with the same name. 7543609dae6eSVaclav Hapla 75441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMLabel`, `DMAddLabel()`, `DMCopyLabelsMode`, `DMLabelCompare()` 7545609dae6eSVaclav Hapla @*/ 7546d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCompareLabels(DM dm0, DM dm1, PetscBool *equal, char **message) 7547d71ae5a4SJacob Faibussowitsch { 75485efe38ccSVaclav Hapla PetscInt n, i; 7549609dae6eSVaclav Hapla char msg[PETSC_MAX_PATH_LEN] = ""; 75505efe38ccSVaclav Hapla PetscBool eq; 7551609dae6eSVaclav Hapla MPI_Comm comm; 75525efe38ccSVaclav Hapla PetscMPIInt rank; 7553609dae6eSVaclav Hapla 7554609dae6eSVaclav Hapla PetscFunctionBegin; 7555609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm0, DM_CLASSID, 1); 7556609dae6eSVaclav Hapla PetscValidHeaderSpecific(dm1, DM_CLASSID, 2); 7557609dae6eSVaclav Hapla PetscCheckSameComm(dm0, 1, dm1, 2); 75584f572ea9SToby Isaac if (equal) PetscAssertPointer(equal, 3); 75594f572ea9SToby Isaac if (message) PetscAssertPointer(message, 4); 75609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)dm0, &comm)); 75619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 75625efe38ccSVaclav Hapla { 75635efe38ccSVaclav Hapla PetscInt n1; 75645efe38ccSVaclav Hapla 75659566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm0, &n)); 75669566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm1, &n1)); 75675efe38ccSVaclav Hapla eq = (PetscBool)(n == n1); 756848a46eb9SPierre Jolivet if (!eq) PetscCall(PetscSNPrintf(msg, sizeof(msg), "Number of labels in dm0 = %" PetscInt_FMT " != %" PetscInt_FMT " = Number of labels in dm1", n, n1)); 7569712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 75705efe38ccSVaclav Hapla if (!eq) goto finish; 75715efe38ccSVaclav Hapla } 75725efe38ccSVaclav Hapla for (i = 0; i < n; i++) { 7573609dae6eSVaclav Hapla DMLabel l0, l1; 7574609dae6eSVaclav Hapla const char *name; 7575609dae6eSVaclav Hapla char *msgInner; 7576609dae6eSVaclav Hapla 7577609dae6eSVaclav Hapla /* Ignore label order */ 75789566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm0, i, &l0)); 75799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)l0, &name)); 75809566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm1, name, &l1)); 7581609dae6eSVaclav Hapla if (!l1) { 758263a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(msg, sizeof(msg), "Label \"%s\" (#%" PetscInt_FMT " in dm0) not found in dm1", name, i)); 75835efe38ccSVaclav Hapla eq = PETSC_FALSE; 75845efe38ccSVaclav Hapla break; 7585609dae6eSVaclav Hapla } 75869566063dSJacob Faibussowitsch PetscCall(DMLabelCompare(comm, l0, l1, &eq, &msgInner)); 75879566063dSJacob Faibussowitsch PetscCall(PetscStrncpy(msg, msgInner, sizeof(msg))); 75889566063dSJacob Faibussowitsch PetscCall(PetscFree(msgInner)); 75895efe38ccSVaclav Hapla if (!eq) break; 7590609dae6eSVaclav Hapla } 7591712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &eq, 1, MPIU_BOOL, MPI_LAND, comm)); 7592609dae6eSVaclav Hapla finish: 75935efe38ccSVaclav Hapla /* If message output arg not set, print to stderr */ 7594609dae6eSVaclav Hapla if (message) { 7595609dae6eSVaclav Hapla *message = NULL; 759648a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscStrallocpy(msg, message)); 75975efe38ccSVaclav Hapla } else { 759848a46eb9SPierre Jolivet if (msg[0]) PetscCall(PetscSynchronizedFPrintf(comm, PETSC_STDERR, "[%d] %s\n", rank, msg)); 75999566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedFlush(comm, PETSC_STDERR)); 76005efe38ccSVaclav Hapla } 76015efe38ccSVaclav Hapla /* If same output arg not ser and labels are not equal, throw error */ 76025efe38ccSVaclav Hapla if (equal) *equal = eq; 76037a8be351SBarry Smith else PetscCheck(eq, comm, PETSC_ERR_ARG_INCOMP, "DMLabels are not the same in dm0 and dm1"); 76043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7605609dae6eSVaclav Hapla } 7606609dae6eSVaclav Hapla 7607d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetLabelValue_Fast(DM dm, DMLabel *label, const char name[], PetscInt point, PetscInt value) 7608d71ae5a4SJacob Faibussowitsch { 7609461a15a0SLisandro Dalcin PetscFunctionBegin; 76104f572ea9SToby Isaac PetscAssertPointer(label, 2); 7611461a15a0SLisandro Dalcin if (!*label) { 76129566063dSJacob Faibussowitsch PetscCall(DMCreateLabel(dm, name)); 76139566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, name, label)); 7614461a15a0SLisandro Dalcin } 76159566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(*label, point, value)); 76163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7617461a15a0SLisandro Dalcin } 7618461a15a0SLisandro Dalcin 76190fdc7489SMatthew Knepley /* 76200fdc7489SMatthew Knepley Many mesh programs, such as Triangle and TetGen, allow only a single label for each mesh point. Therefore, we would 76210fdc7489SMatthew Knepley like to encode all label IDs using a single, universal label. We can do this by assigning an integer to every 76220fdc7489SMatthew Knepley (label, id) pair in the DM. 76230fdc7489SMatthew Knepley 76240fdc7489SMatthew Knepley However, a mesh point can have multiple labels, so we must separate all these values. We will assign a bit range to 76250fdc7489SMatthew Knepley each label. 76260fdc7489SMatthew Knepley */ 7627d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreate(DM dm, DMUniversalLabel *universal) 7628d71ae5a4SJacob Faibussowitsch { 76290fdc7489SMatthew Knepley DMUniversalLabel ul; 76300fdc7489SMatthew Knepley PetscBool *active; 76310fdc7489SMatthew Knepley PetscInt pStart, pEnd, p, Nl, l, m; 76320fdc7489SMatthew Knepley 76330fdc7489SMatthew Knepley PetscFunctionBegin; 76349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &ul)); 76359566063dSJacob Faibussowitsch PetscCall(DMLabelCreate(PETSC_COMM_SELF, "universal", &ul->label)); 76369566063dSJacob Faibussowitsch PetscCall(DMGetNumLabels(dm, &Nl)); 76379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Nl, &active)); 76380fdc7489SMatthew Knepley ul->Nl = 0; 76390fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 76400fdc7489SMatthew Knepley PetscBool isdepth, iscelltype; 76410fdc7489SMatthew Knepley const char *name; 76420fdc7489SMatthew Knepley 76439566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76449566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "depth", 6, &isdepth)); 76459566063dSJacob Faibussowitsch PetscCall(PetscStrncmp(name, "celltype", 9, &iscelltype)); 76460fdc7489SMatthew Knepley active[l] = !(isdepth || iscelltype) ? PETSC_TRUE : PETSC_FALSE; 76470fdc7489SMatthew Knepley if (active[l]) ++ul->Nl; 76480fdc7489SMatthew Knepley } 76499566063dSJacob Faibussowitsch PetscCall(PetscCalloc5(ul->Nl, &ul->names, ul->Nl, &ul->indices, ul->Nl + 1, &ul->offsets, ul->Nl + 1, &ul->bits, ul->Nl, &ul->masks)); 76500fdc7489SMatthew Knepley ul->Nv = 0; 76510fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76520fdc7489SMatthew Knepley DMLabel label; 76530fdc7489SMatthew Knepley PetscInt nv; 76540fdc7489SMatthew Knepley const char *name; 76550fdc7489SMatthew Knepley 76560fdc7489SMatthew Knepley if (!active[l]) continue; 76579566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, l, &name)); 76589566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76599566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76609566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(name, &ul->names[m])); 76610fdc7489SMatthew Knepley ul->indices[m] = l; 76620fdc7489SMatthew Knepley ul->Nv += nv; 76630fdc7489SMatthew Knepley ul->offsets[m + 1] = nv; 76640fdc7489SMatthew Knepley ul->bits[m + 1] = PetscCeilReal(PetscLog2Real(nv + 1)); 76650fdc7489SMatthew Knepley ++m; 76660fdc7489SMatthew Knepley } 76670fdc7489SMatthew Knepley for (l = 1; l <= ul->Nl; ++l) { 76680fdc7489SMatthew Knepley ul->offsets[l] = ul->offsets[l - 1] + ul->offsets[l]; 76690fdc7489SMatthew Knepley ul->bits[l] = ul->bits[l - 1] + ul->bits[l]; 76700fdc7489SMatthew Knepley } 76710fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 76720fdc7489SMatthew Knepley PetscInt b; 76730fdc7489SMatthew Knepley 76740fdc7489SMatthew Knepley ul->masks[l] = 0; 76750fdc7489SMatthew Knepley for (b = ul->bits[l]; b < ul->bits[l + 1]; ++b) ul->masks[l] |= 1 << b; 76760fdc7489SMatthew Knepley } 76779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ul->Nv, &ul->values)); 76780fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 76790fdc7489SMatthew Knepley DMLabel label; 76800fdc7489SMatthew Knepley IS valueIS; 76810fdc7489SMatthew Knepley const PetscInt *varr; 76820fdc7489SMatthew Knepley PetscInt nv, v; 76830fdc7489SMatthew Knepley 76840fdc7489SMatthew Knepley if (!active[l]) continue; 76859566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 76869566063dSJacob Faibussowitsch PetscCall(DMLabelGetNumValues(label, &nv)); 76879566063dSJacob Faibussowitsch PetscCall(DMLabelGetValueIS(label, &valueIS)); 76889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(valueIS, &varr)); 7689ad540459SPierre Jolivet for (v = 0; v < nv; ++v) ul->values[ul->offsets[m] + v] = varr[v]; 76909566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(valueIS, &varr)); 76919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&valueIS)); 76929566063dSJacob Faibussowitsch PetscCall(PetscSortInt(nv, &ul->values[ul->offsets[m]])); 76930fdc7489SMatthew Knepley ++m; 76940fdc7489SMatthew Knepley } 76959566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 76960fdc7489SMatthew Knepley for (p = pStart; p < pEnd; ++p) { 76970fdc7489SMatthew Knepley PetscInt uval = 0; 76980fdc7489SMatthew Knepley PetscBool marked = PETSC_FALSE; 76990fdc7489SMatthew Knepley 77000fdc7489SMatthew Knepley for (l = 0, m = 0; l < Nl; ++l) { 77010fdc7489SMatthew Knepley DMLabel label; 77020649b39aSStefano Zampini PetscInt val, defval, loc, nv; 77030fdc7489SMatthew Knepley 77040fdc7489SMatthew Knepley if (!active[l]) continue; 77059566063dSJacob Faibussowitsch PetscCall(DMGetLabelByNum(dm, l, &label)); 77069566063dSJacob Faibussowitsch PetscCall(DMLabelGetValue(label, p, &val)); 77079566063dSJacob Faibussowitsch PetscCall(DMLabelGetDefaultValue(label, &defval)); 77089371c9d4SSatish Balay if (val == defval) { 77099371c9d4SSatish Balay ++m; 77109371c9d4SSatish Balay continue; 77119371c9d4SSatish Balay } 77120649b39aSStefano Zampini nv = ul->offsets[m + 1] - ul->offsets[m]; 77130fdc7489SMatthew Knepley marked = PETSC_TRUE; 77149566063dSJacob Faibussowitsch PetscCall(PetscFindInt(val, nv, &ul->values[ul->offsets[m]], &loc)); 771563a3b9bcSJacob Faibussowitsch PetscCheck(loc >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Label value %" PetscInt_FMT " not found in compression array", val); 77160fdc7489SMatthew Knepley uval += (loc + 1) << ul->bits[m]; 77170fdc7489SMatthew Knepley ++m; 77180fdc7489SMatthew Knepley } 77199566063dSJacob Faibussowitsch if (marked) PetscCall(DMLabelSetValue(ul->label, p, uval)); 77200fdc7489SMatthew Knepley } 77219566063dSJacob Faibussowitsch PetscCall(PetscFree(active)); 77220fdc7489SMatthew Knepley *universal = ul; 77233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77240fdc7489SMatthew Knepley } 77250fdc7489SMatthew Knepley 7726d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelDestroy(DMUniversalLabel *universal) 7727d71ae5a4SJacob Faibussowitsch { 77280fdc7489SMatthew Knepley PetscInt l; 77290fdc7489SMatthew Knepley 77300fdc7489SMatthew Knepley PetscFunctionBegin; 77319566063dSJacob Faibussowitsch for (l = 0; l < (*universal)->Nl; ++l) PetscCall(PetscFree((*universal)->names[l])); 77329566063dSJacob Faibussowitsch PetscCall(DMLabelDestroy(&(*universal)->label)); 77339566063dSJacob Faibussowitsch PetscCall(PetscFree5((*universal)->names, (*universal)->indices, (*universal)->offsets, (*universal)->bits, (*universal)->masks)); 77349566063dSJacob Faibussowitsch PetscCall(PetscFree((*universal)->values)); 77359566063dSJacob Faibussowitsch PetscCall(PetscFree(*universal)); 77360fdc7489SMatthew Knepley *universal = NULL; 77373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77380fdc7489SMatthew Knepley } 77390fdc7489SMatthew Knepley 7740d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelGetLabel(DMUniversalLabel ul, DMLabel *ulabel) 7741d71ae5a4SJacob Faibussowitsch { 77420fdc7489SMatthew Knepley PetscFunctionBegin; 77434f572ea9SToby Isaac PetscAssertPointer(ulabel, 2); 77440fdc7489SMatthew Knepley *ulabel = ul->label; 77453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77460fdc7489SMatthew Knepley } 77470fdc7489SMatthew Knepley 7748d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelCreateLabels(DMUniversalLabel ul, PetscBool preserveOrder, DM dm) 7749d71ae5a4SJacob Faibussowitsch { 77500fdc7489SMatthew Knepley PetscInt Nl = ul->Nl, l; 77510fdc7489SMatthew Knepley 77520fdc7489SMatthew Knepley PetscFunctionBegin; 7753064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(dm, DM_CLASSID, 3); 77540fdc7489SMatthew Knepley for (l = 0; l < Nl; ++l) { 77559566063dSJacob Faibussowitsch if (preserveOrder) PetscCall(DMCreateLabelAtIndex(dm, ul->indices[l], ul->names[l])); 77569566063dSJacob Faibussowitsch else PetscCall(DMCreateLabel(dm, ul->names[l])); 77570fdc7489SMatthew Knepley } 77580fdc7489SMatthew Knepley if (preserveOrder) { 77590fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77600fdc7489SMatthew Knepley const char *name; 77610fdc7489SMatthew Knepley PetscBool match; 77620fdc7489SMatthew Knepley 77639566063dSJacob Faibussowitsch PetscCall(DMGetLabelName(dm, ul->indices[l], &name)); 77649566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(name, ul->names[l], &match)); 776563a3b9bcSJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Label %" PetscInt_FMT " name %s does not match new name %s", l, name, ul->names[l]); 77660fdc7489SMatthew Knepley } 77670fdc7489SMatthew Knepley } 77683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77690fdc7489SMatthew Knepley } 77700fdc7489SMatthew Knepley 7771d71ae5a4SJacob Faibussowitsch PetscErrorCode DMUniversalLabelSetLabelValue(DMUniversalLabel ul, DM dm, PetscBool useIndex, PetscInt p, PetscInt value) 7772d71ae5a4SJacob Faibussowitsch { 77730fdc7489SMatthew Knepley PetscInt l; 77740fdc7489SMatthew Knepley 77750fdc7489SMatthew Knepley PetscFunctionBegin; 77760fdc7489SMatthew Knepley for (l = 0; l < ul->Nl; ++l) { 77770fdc7489SMatthew Knepley DMLabel label; 77780fdc7489SMatthew Knepley PetscInt lval = (value & ul->masks[l]) >> ul->bits[l]; 77790fdc7489SMatthew Knepley 77800fdc7489SMatthew Knepley if (lval) { 77819566063dSJacob Faibussowitsch if (useIndex) PetscCall(DMGetLabelByNum(dm, ul->indices[l], &label)); 77829566063dSJacob Faibussowitsch else PetscCall(DMGetLabel(dm, ul->names[l], &label)); 77839566063dSJacob Faibussowitsch PetscCall(DMLabelSetValue(label, p, ul->values[ul->offsets[l] + lval - 1])); 77840fdc7489SMatthew Knepley } 77850fdc7489SMatthew Knepley } 77863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77870fdc7489SMatthew Knepley } 7788a8fb8f29SToby Isaac 7789a8fb8f29SToby Isaac /*@ 7790bb7acecfSBarry Smith DMGetCoarseDM - Get the coarse `DM`from which this `DM` was obtained by refinement 7791bb7acecfSBarry Smith 779220f4b53cSBarry Smith Not Collective 7793a8fb8f29SToby Isaac 7794a8fb8f29SToby Isaac Input Parameter: 7795bb7acecfSBarry Smith . dm - The `DM` object 7796a8fb8f29SToby Isaac 7797a8fb8f29SToby Isaac Output Parameter: 7798bb7acecfSBarry Smith . cdm - The coarse `DM` 7799a8fb8f29SToby Isaac 7800a8fb8f29SToby Isaac Level: intermediate 7801a8fb8f29SToby Isaac 78021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetCoarseDM()`, `DMCoarsen()` 7803a8fb8f29SToby Isaac @*/ 7804d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCoarseDM(DM dm, DM *cdm) 7805d71ae5a4SJacob Faibussowitsch { 7806a8fb8f29SToby Isaac PetscFunctionBegin; 7807a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78084f572ea9SToby Isaac PetscAssertPointer(cdm, 2); 7809a8fb8f29SToby Isaac *cdm = dm->coarseMesh; 78103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7811a8fb8f29SToby Isaac } 7812a8fb8f29SToby Isaac 7813a8fb8f29SToby Isaac /*@ 7814bb7acecfSBarry Smith DMSetCoarseDM - Set the coarse `DM` from which this `DM` was obtained by refinement 7815a8fb8f29SToby Isaac 7816a8fb8f29SToby Isaac Input Parameters: 7817bb7acecfSBarry Smith + dm - The `DM` object 7818bb7acecfSBarry Smith - cdm - The coarse `DM` 7819a8fb8f29SToby Isaac 7820a8fb8f29SToby Isaac Level: intermediate 7821a8fb8f29SToby Isaac 7822bb7acecfSBarry Smith Note: 7823bb7acecfSBarry Smith Normally this is set automatically by `DMRefine()` 7824bb7acecfSBarry Smith 78251cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetCoarseDM()`, `DMCoarsen()`, `DMSetRefine()`, `DMSetFineDM()` 7826a8fb8f29SToby Isaac @*/ 7827d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetCoarseDM(DM dm, DM cdm) 7828d71ae5a4SJacob Faibussowitsch { 7829a8fb8f29SToby Isaac PetscFunctionBegin; 7830a8fb8f29SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7831a8fb8f29SToby Isaac if (cdm) PetscValidHeaderSpecific(cdm, DM_CLASSID, 2); 783289d734beSBarry Smith if (dm == cdm) cdm = NULL; 78339566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cdm)); 78349566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->coarseMesh)); 7835a8fb8f29SToby Isaac dm->coarseMesh = cdm; 78363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7837a8fb8f29SToby Isaac } 7838a8fb8f29SToby Isaac 783988bdff64SToby Isaac /*@ 7840bb7acecfSBarry Smith DMGetFineDM - Get the fine mesh from which this `DM` was obtained by coarsening 784188bdff64SToby Isaac 784288bdff64SToby Isaac Input Parameter: 7843bb7acecfSBarry Smith . dm - The `DM` object 784488bdff64SToby Isaac 784588bdff64SToby Isaac Output Parameter: 7846bb7acecfSBarry Smith . fdm - The fine `DM` 784788bdff64SToby Isaac 784888bdff64SToby Isaac Level: intermediate 784988bdff64SToby Isaac 78501cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMSetFineDM()`, `DMCoarsen()`, `DMRefine()` 785188bdff64SToby Isaac @*/ 7852d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetFineDM(DM dm, DM *fdm) 7853d71ae5a4SJacob Faibussowitsch { 785488bdff64SToby Isaac PetscFunctionBegin; 785588bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 78564f572ea9SToby Isaac PetscAssertPointer(fdm, 2); 785788bdff64SToby Isaac *fdm = dm->fineMesh; 78583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 785988bdff64SToby Isaac } 786088bdff64SToby Isaac 786188bdff64SToby Isaac /*@ 7862bb7acecfSBarry Smith DMSetFineDM - Set the fine mesh from which this was obtained by coarsening 786388bdff64SToby Isaac 786488bdff64SToby Isaac Input Parameters: 7865bb7acecfSBarry Smith + dm - The `DM` object 7866bb7acecfSBarry Smith - fdm - The fine `DM` 786788bdff64SToby Isaac 7868bb7acecfSBarry Smith Level: developer 786988bdff64SToby Isaac 7870bb7acecfSBarry Smith Note: 7871bb7acecfSBarry Smith Normally this is set automatically by `DMCoarsen()` 7872bb7acecfSBarry Smith 78731cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMGetFineDM()`, `DMCoarsen()`, `DMRefine()` 787488bdff64SToby Isaac @*/ 7875d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetFineDM(DM dm, DM fdm) 7876d71ae5a4SJacob Faibussowitsch { 787788bdff64SToby Isaac PetscFunctionBegin; 787888bdff64SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 787988bdff64SToby Isaac if (fdm) PetscValidHeaderSpecific(fdm, DM_CLASSID, 2); 788089d734beSBarry Smith if (dm == fdm) fdm = NULL; 78819566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)fdm)); 78829566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm->fineMesh)); 788388bdff64SToby Isaac dm->fineMesh = fdm; 78843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 788588bdff64SToby Isaac } 788688bdff64SToby Isaac 7887a6ba4734SToby Isaac /*@C 7888bb7acecfSBarry Smith DMAddBoundary - Add a boundary condition to a model represented by a `DM` 7889a6ba4734SToby Isaac 789020f4b53cSBarry Smith Collective 7891783e2ec8SMatthew G. Knepley 7892a6ba4734SToby Isaac Input Parameters: 7893bb7acecfSBarry Smith + dm - The `DM`, with a `PetscDS` that matches the problem being constrained 7894bb7acecfSBarry Smith . type - The type of condition, e.g. `DM_BC_ESSENTIAL_ANALYTIC`, `DM_BC_ESSENTIAL_FIELD` (Dirichlet), or `DM_BC_NATURAL` (Neumann) 7895a6ba4734SToby Isaac . name - The BC name 789645480ffeSMatthew G. Knepley . label - The label defining constrained points 7897bb7acecfSBarry Smith . Nv - The number of `DMLabel` values for constrained points 789845480ffeSMatthew G. Knepley . values - An array of values for constrained points 7899a6ba4734SToby Isaac . field - The field to constrain 790045480ffeSMatthew G. Knepley . Nc - The number of constrained field components (0 will constrain all fields) 7901a6ba4734SToby Isaac . comps - An array of constrained component numbers 7902a6ba4734SToby Isaac . bcFunc - A pointwise function giving boundary values 790356cf3b9cSMatthew G. Knepley . bcFunc_t - A pointwise function giving the time deriative of the boundary values, or NULL 7904a6ba4734SToby Isaac - ctx - An optional user context for bcFunc 7905a6ba4734SToby Isaac 790645480ffeSMatthew G. Knepley Output Parameter: 790745480ffeSMatthew G. Knepley . bd - (Optional) Boundary number 790845480ffeSMatthew G. Knepley 7909a6ba4734SToby Isaac Options Database Keys: 7910a6ba4734SToby Isaac + -bc_<boundary name> <num> - Overrides the boundary ids 7911a6ba4734SToby Isaac - -bc_<boundary name>_comp <num> - Overrides the boundary components 7912a6ba4734SToby Isaac 791320f4b53cSBarry Smith Level: intermediate 791420f4b53cSBarry Smith 7915bb7acecfSBarry Smith Notes: 791637fdd005SBarry Smith Both bcFunc abd bcFunc_t will depend on the boundary condition type. If the type if `DM_BC_ESSENTIAL`, then the calling sequence is\: 7917*73ff1848SBarry Smith .vb 7918*73ff1848SBarry Smith void bcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[]) 7919*73ff1848SBarry Smith .ve 792056cf3b9cSMatthew G. Knepley 7921a4e35b19SJacob Faibussowitsch If the type is `DM_BC_ESSENTIAL_FIELD` or other _FIELD value, then the calling sequence is\: 792256cf3b9cSMatthew G. Knepley 792320f4b53cSBarry Smith .vb 792420f4b53cSBarry Smith void bcFunc(PetscInt dim, PetscInt Nf, PetscInt NfAux, 792520f4b53cSBarry Smith const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], 792620f4b53cSBarry Smith const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], 792720f4b53cSBarry Smith PetscReal time, const PetscReal x[], PetscScalar bcval[]) 792820f4b53cSBarry Smith .ve 792956cf3b9cSMatthew G. Knepley + dim - the spatial dimension 793056cf3b9cSMatthew G. Knepley . Nf - the number of fields 793156cf3b9cSMatthew G. Knepley . uOff - the offset into u[] and u_t[] for each field 793256cf3b9cSMatthew G. Knepley . uOff_x - the offset into u_x[] for each field 793356cf3b9cSMatthew G. Knepley . u - each field evaluated at the current point 793456cf3b9cSMatthew G. Knepley . u_t - the time derivative of each field evaluated at the current point 793556cf3b9cSMatthew G. Knepley . u_x - the gradient of each field evaluated at the current point 793656cf3b9cSMatthew G. Knepley . aOff - the offset into a[] and a_t[] for each auxiliary field 793756cf3b9cSMatthew G. Knepley . aOff_x - the offset into a_x[] for each auxiliary field 793856cf3b9cSMatthew G. Knepley . a - each auxiliary field evaluated at the current point 793956cf3b9cSMatthew G. Knepley . a_t - the time derivative of each auxiliary field evaluated at the current point 794056cf3b9cSMatthew G. Knepley . a_x - the gradient of auxiliary each field evaluated at the current point 794156cf3b9cSMatthew G. Knepley . t - current time 794256cf3b9cSMatthew G. Knepley . x - coordinates of the current point 794356cf3b9cSMatthew G. Knepley . numConstants - number of constant parameters 794456cf3b9cSMatthew G. Knepley . constants - constant parameters 794556cf3b9cSMatthew G. Knepley - bcval - output values at the current point 794656cf3b9cSMatthew G. Knepley 79471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DSGetBoundary()`, `PetscDSAddBoundary()` 7948a6ba4734SToby Isaac @*/ 7949d71ae5a4SJacob Faibussowitsch PetscErrorCode DMAddBoundary(DM dm, DMBoundaryConditionType type, const char name[], DMLabel label, PetscInt Nv, const PetscInt values[], PetscInt field, PetscInt Nc, const PetscInt comps[], void (*bcFunc)(void), void (*bcFunc_t)(void), void *ctx, PetscInt *bd) 7950d71ae5a4SJacob Faibussowitsch { 7951e5e52638SMatthew G. Knepley PetscDS ds; 7952a6ba4734SToby Isaac 7953a6ba4734SToby Isaac PetscFunctionBegin; 7954a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 7955783e2ec8SMatthew G. Knepley PetscValidLogicalCollectiveEnum(dm, type, 2); 795645480ffeSMatthew G. Knepley PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 4); 795745480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nv, 5); 795845480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, field, 7); 795945480ffeSMatthew G. Knepley PetscValidLogicalCollectiveInt(dm, Nc, 8); 796001a5d20dSJed Brown PetscCheck(!dm->localSection, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONGSTATE, "Cannot add boundary to DM after creating local section"); 79619566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7962799db056SMatthew G. Knepley /* Complete label */ 7963799db056SMatthew G. Knepley if (label) { 7964799db056SMatthew G. Knepley PetscObject obj; 7965799db056SMatthew G. Knepley PetscClassId id; 7966799db056SMatthew G. Knepley 7967799db056SMatthew G. Knepley PetscCall(DMGetField(dm, field, NULL, &obj)); 7968799db056SMatthew G. Knepley PetscCall(PetscObjectGetClassId(obj, &id)); 7969799db056SMatthew G. Knepley if (id == PETSCFE_CLASSID) { 7970799db056SMatthew G. Knepley DM plex; 7971799db056SMatthew G. Knepley 7972799db056SMatthew G. Knepley PetscCall(DMConvert(dm, DMPLEX, &plex)); 7973799db056SMatthew G. Knepley if (plex) PetscCall(DMPlexLabelComplete(plex, label)); 7974799db056SMatthew G. Knepley PetscCall(DMDestroy(&plex)); 7975799db056SMatthew G. Knepley } 7976799db056SMatthew G. Knepley } 79779566063dSJacob Faibussowitsch PetscCall(PetscDSAddBoundary(ds, type, name, label, Nv, values, field, Nc, comps, bcFunc, bcFunc_t, ctx, bd)); 79783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7979a6ba4734SToby Isaac } 7980a6ba4734SToby Isaac 798145480ffeSMatthew G. Knepley /* TODO Remove this since now the structures are the same */ 7982d71ae5a4SJacob Faibussowitsch static PetscErrorCode DMPopulateBoundary(DM dm) 7983d71ae5a4SJacob Faibussowitsch { 7984e5e52638SMatthew G. Knepley PetscDS ds; 7985dff059c6SToby Isaac DMBoundary *lastnext; 7986e6f8dbb6SToby Isaac DSBoundary dsbound; 7987e6f8dbb6SToby Isaac 7988e6f8dbb6SToby Isaac PetscFunctionBegin; 79899566063dSJacob Faibussowitsch PetscCall(DMGetDS(dm, &ds)); 7990e5e52638SMatthew G. Knepley dsbound = ds->boundary; 799147a1f5adSToby Isaac if (dm->boundary) { 799247a1f5adSToby Isaac DMBoundary next = dm->boundary; 799347a1f5adSToby Isaac 799447a1f5adSToby Isaac /* quick check to see if the PetscDS has changed */ 79953ba16761SJacob Faibussowitsch if (next->dsboundary == dsbound) PetscFunctionReturn(PETSC_SUCCESS); 799647a1f5adSToby Isaac /* the PetscDS has changed: tear down and rebuild */ 799747a1f5adSToby Isaac while (next) { 799847a1f5adSToby Isaac DMBoundary b = next; 799947a1f5adSToby Isaac 800047a1f5adSToby Isaac next = b->next; 80019566063dSJacob Faibussowitsch PetscCall(PetscFree(b)); 8002a6ba4734SToby Isaac } 800347a1f5adSToby Isaac dm->boundary = NULL; 8004a6ba4734SToby Isaac } 800547a1f5adSToby Isaac 8006f4f49eeaSPierre Jolivet lastnext = &dm->boundary; 8007e6f8dbb6SToby Isaac while (dsbound) { 8008e6f8dbb6SToby Isaac DMBoundary dmbound; 8009e6f8dbb6SToby Isaac 80109566063dSJacob Faibussowitsch PetscCall(PetscNew(&dmbound)); 8011e6f8dbb6SToby Isaac dmbound->dsboundary = dsbound; 801245480ffeSMatthew G. Knepley dmbound->label = dsbound->label; 801347a1f5adSToby Isaac /* push on the back instead of the front so that it is in the same order as in the PetscDS */ 8014dff059c6SToby Isaac *lastnext = dmbound; 8015f4f49eeaSPierre Jolivet lastnext = &dmbound->next; 8016dff059c6SToby Isaac dsbound = dsbound->next; 8017a6ba4734SToby Isaac } 80183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8019a6ba4734SToby Isaac } 8020a6ba4734SToby Isaac 8021bb7acecfSBarry Smith /* TODO: missing manual page */ 8022d71ae5a4SJacob Faibussowitsch PetscErrorCode DMIsBoundaryPoint(DM dm, PetscInt point, PetscBool *isBd) 8023d71ae5a4SJacob Faibussowitsch { 8024b95f2879SToby Isaac DMBoundary b; 8025a6ba4734SToby Isaac 8026a6ba4734SToby Isaac PetscFunctionBegin; 8027a6ba4734SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 80284f572ea9SToby Isaac PetscAssertPointer(isBd, 3); 8029a6ba4734SToby Isaac *isBd = PETSC_FALSE; 80309566063dSJacob Faibussowitsch PetscCall(DMPopulateBoundary(dm)); 8031b95f2879SToby Isaac b = dm->boundary; 8032a6ba4734SToby Isaac while (b && !(*isBd)) { 8033e6f8dbb6SToby Isaac DMLabel label = b->label; 8034e6f8dbb6SToby Isaac DSBoundary dsb = b->dsboundary; 8035a6ba4734SToby Isaac PetscInt i; 8036a6ba4734SToby Isaac 803745480ffeSMatthew G. Knepley if (label) { 80389566063dSJacob Faibussowitsch for (i = 0; i < dsb->Nv && !(*isBd); ++i) PetscCall(DMLabelStratumHasPoint(label, dsb->values[i], point, isBd)); 8039a6ba4734SToby Isaac } 8040a6ba4734SToby Isaac b = b->next; 8041a6ba4734SToby Isaac } 80423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8043a6ba4734SToby Isaac } 80444d6f44ffSToby Isaac 80454d6f44ffSToby Isaac /*@C 8046bb7acecfSBarry Smith DMProjectFunction - This projects the given function into the function space provided by a `DM`, putting the coefficients in a global vector. 8047a6e0b375SMatthew G. Knepley 804820f4b53cSBarry Smith Collective 80494d6f44ffSToby Isaac 80504d6f44ffSToby Isaac Input Parameters: 8051bb7acecfSBarry Smith + dm - The `DM` 80520709b2feSToby Isaac . time - The time 80534d6f44ffSToby Isaac . funcs - The coordinate functions to evaluate, one per field 80544d6f44ffSToby Isaac . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 80554d6f44ffSToby Isaac - mode - The insertion mode for values 80564d6f44ffSToby Isaac 80574d6f44ffSToby Isaac Output Parameter: 80584d6f44ffSToby Isaac . X - vector 80594d6f44ffSToby Isaac 806020f4b53cSBarry Smith Calling sequence of `funcs`: 80614d6f44ffSToby Isaac + dim - The spatial dimension 80628ec8862eSJed Brown . time - The time at which to sample 80634d6f44ffSToby Isaac . x - The coordinates 806477b739a6SMatthew Knepley . Nc - The number of components 80654d6f44ffSToby Isaac . u - The output field values 80664d6f44ffSToby Isaac - ctx - optional user-defined function context 80674d6f44ffSToby Isaac 80684d6f44ffSToby Isaac Level: developer 80694d6f44ffSToby Isaac 8070bb7acecfSBarry Smith Developer Notes: 8071bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8072bb7acecfSBarry Smith 8073bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8074bb7acecfSBarry Smith 80751cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 80764d6f44ffSToby Isaac @*/ 8077a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunction(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8078d71ae5a4SJacob Faibussowitsch { 80794d6f44ffSToby Isaac Vec localX; 80804d6f44ffSToby Isaac 80814d6f44ffSToby Isaac PetscFunctionBegin; 80824d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8083708be2fdSJed Brown PetscCall(PetscLogEventBegin(DM_ProjectFunction, dm, X, 0, 0)); 80849566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8085f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 80869566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLocal(dm, time, funcs, ctxs, mode, localX)); 80879566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 80889566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 80899566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 8090708be2fdSJed Brown PetscCall(PetscLogEventEnd(DM_ProjectFunction, dm, X, 0, 0)); 80913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 80924d6f44ffSToby Isaac } 80934d6f44ffSToby Isaac 8094a6e0b375SMatthew G. Knepley /*@C 8095bb7acecfSBarry Smith DMProjectFunctionLocal - This projects the given function into the function space provided by a `DM`, putting the coefficients in a local vector. 8096a6e0b375SMatthew G. Knepley 809720f4b53cSBarry Smith Not Collective 8098a6e0b375SMatthew G. Knepley 8099a6e0b375SMatthew G. Knepley Input Parameters: 8100bb7acecfSBarry Smith + dm - The `DM` 8101a6e0b375SMatthew G. Knepley . time - The time 8102a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8103a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8104a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8105a6e0b375SMatthew G. Knepley 8106a6e0b375SMatthew G. Knepley Output Parameter: 8107a6e0b375SMatthew G. Knepley . localX - vector 8108a6e0b375SMatthew G. Knepley 810920f4b53cSBarry Smith Calling sequence of `funcs`: 8110a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8111a4e35b19SJacob Faibussowitsch . time - The current timestep 8112a6e0b375SMatthew G. Knepley . x - The coordinates 811377b739a6SMatthew Knepley . Nc - The number of components 8114a6e0b375SMatthew G. Knepley . u - The output field values 8115a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8116a6e0b375SMatthew G. Knepley 8117a6e0b375SMatthew G. Knepley Level: developer 8118a6e0b375SMatthew G. Knepley 8119bb7acecfSBarry Smith Developer Notes: 8120bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8121bb7acecfSBarry Smith 8122bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8123bb7acecfSBarry Smith 81241cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8125a6e0b375SMatthew G. Knepley @*/ 8126a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLocal(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8127d71ae5a4SJacob Faibussowitsch { 81284d6f44ffSToby Isaac PetscFunctionBegin; 81294d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8130064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8131fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlocal, time, funcs, ctxs, mode, localX); 81323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81334d6f44ffSToby Isaac } 81344d6f44ffSToby Isaac 8135a6e0b375SMatthew G. Knepley /*@C 8136bb7acecfSBarry Smith DMProjectFunctionLabel - This projects the given function into the function space provided by the `DM`, putting the coefficients in a global vector, setting values only for points in the given label. 8137a6e0b375SMatthew G. Knepley 813820f4b53cSBarry Smith Collective 8139a6e0b375SMatthew G. Knepley 8140a6e0b375SMatthew G. Knepley Input Parameters: 8141bb7acecfSBarry Smith + dm - The `DM` 8142a6e0b375SMatthew G. Knepley . time - The time 8143a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8144a4e35b19SJacob Faibussowitsch . ids - The ids 8145a4e35b19SJacob Faibussowitsch . Nc - The number of components 8146a4e35b19SJacob Faibussowitsch . comps - The components 8147bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8148a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8149bb7acecfSBarry Smith . ctxs - Optional array of contexts to pass to each coordinate function. ctxs may be null. 8150a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8151a6e0b375SMatthew G. Knepley 8152a6e0b375SMatthew G. Knepley Output Parameter: 8153a6e0b375SMatthew G. Knepley . X - vector 8154a6e0b375SMatthew G. Knepley 815520f4b53cSBarry Smith Calling sequence of `funcs`: 8156a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8157a4e35b19SJacob Faibussowitsch . time - The current timestep 8158a6e0b375SMatthew G. Knepley . x - The coordinates 815977b739a6SMatthew Knepley . Nc - The number of components 8160a6e0b375SMatthew G. Knepley . u - The output field values 8161a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8162a6e0b375SMatthew G. Knepley 8163a6e0b375SMatthew G. Knepley Level: developer 8164a6e0b375SMatthew G. Knepley 8165bb7acecfSBarry Smith Developer Notes: 8166bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8167bb7acecfSBarry Smith 8168bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8169bb7acecfSBarry Smith 81701cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabelLocal()`, `DMComputeL2Diff()` 8171a6e0b375SMatthew G. Knepley @*/ 8172a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec X) 8173d71ae5a4SJacob Faibussowitsch { 81742c53366bSMatthew G. Knepley Vec localX; 81752c53366bSMatthew G. Knepley 81762c53366bSMatthew G. Knepley PetscFunctionBegin; 81772c53366bSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 81789566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &localX)); 8179f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 81809566063dSJacob Faibussowitsch PetscCall(DMProjectFunctionLabelLocal(dm, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX)); 81819566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 81829566063dSJacob Faibussowitsch PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 81839566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &localX)); 81843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81852c53366bSMatthew G. Knepley } 81862c53366bSMatthew G. Knepley 8187a6e0b375SMatthew G. Knepley /*@C 8188bb7acecfSBarry Smith DMProjectFunctionLabelLocal - This projects the given function into the function space provided by the `DM`, putting the coefficients in a local vector, setting values only for points in the given label. 8189a6e0b375SMatthew G. Knepley 819020f4b53cSBarry Smith Not Collective 8191a6e0b375SMatthew G. Knepley 8192a6e0b375SMatthew G. Knepley Input Parameters: 8193bb7acecfSBarry Smith + dm - The `DM` 8194a6e0b375SMatthew G. Knepley . time - The time 8195bb7acecfSBarry Smith . label - The `DMLabel` selecting the portion of the mesh for projection 8196a4e35b19SJacob Faibussowitsch . numIds - The number of ids 8197a4e35b19SJacob Faibussowitsch . ids - The ids 8198a4e35b19SJacob Faibussowitsch . Nc - The number of components 8199a4e35b19SJacob Faibussowitsch . comps - The components 8200a6e0b375SMatthew G. Knepley . funcs - The coordinate functions to evaluate, one per field 8201a6e0b375SMatthew G. Knepley . ctxs - Optional array of contexts to pass to each coordinate function. ctxs itself may be null. 8202a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8203a6e0b375SMatthew G. Knepley 8204a6e0b375SMatthew G. Knepley Output Parameter: 8205a6e0b375SMatthew G. Knepley . localX - vector 8206a6e0b375SMatthew G. Knepley 820720f4b53cSBarry Smith Calling sequence of `funcs`: 8208a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8209a4e35b19SJacob Faibussowitsch . time - The current time 8210a6e0b375SMatthew G. Knepley . x - The coordinates 821177b739a6SMatthew Knepley . Nc - The number of components 8212a6e0b375SMatthew G. Knepley . u - The output field values 8213a6e0b375SMatthew G. Knepley - ctx - optional user-defined function context 8214a6e0b375SMatthew G. Knepley 8215a6e0b375SMatthew G. Knepley Level: developer 8216a6e0b375SMatthew G. Knepley 8217bb7acecfSBarry Smith Developer Notes: 8218bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8219bb7acecfSBarry Smith 8220bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8221bb7acecfSBarry Smith 82221cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMProjectFunctionLocal()`, `DMProjectFunctionLabel()`, `DMComputeL2Diff()` 8223a6e0b375SMatthew G. Knepley @*/ 8224a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFunctionLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], PetscErrorCode (**funcs)(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar *u, void *ctx), void **ctxs, InsertMode mode, Vec localX) 8225d71ae5a4SJacob Faibussowitsch { 82264d6f44ffSToby Isaac PetscFunctionBegin; 82274d6f44ffSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8228064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8229fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfunctionlabellocal, time, label, numIds, ids, Nc, comps, funcs, ctxs, mode, localX); 82303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82314d6f44ffSToby Isaac } 82322716604bSToby Isaac 8233a6e0b375SMatthew G. Knepley /*@C 8234bb7acecfSBarry Smith DMProjectFieldLocal - This projects the given function of the input fields into the function space provided by the `DM`, putting the coefficients in a local vector. 8235a6e0b375SMatthew G. Knepley 823620f4b53cSBarry Smith Not Collective 8237a6e0b375SMatthew G. Knepley 8238a6e0b375SMatthew G. Knepley Input Parameters: 8239bb7acecfSBarry Smith + dm - The `DM` 8240a6e0b375SMatthew G. Knepley . time - The time 824120f4b53cSBarry Smith . localU - The input field vector; may be `NULL` if projection is defined purely by coordinates 8242a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8243a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8244a6e0b375SMatthew G. Knepley 8245a6e0b375SMatthew G. Knepley Output Parameter: 8246a6e0b375SMatthew G. Knepley . localX - The output vector 8247a6e0b375SMatthew G. Knepley 824820f4b53cSBarry Smith Calling sequence of `funcs`: 8249a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8250a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8251a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8252a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8253a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8254a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8255a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8256a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8257a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8258a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8259a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8260a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8261a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8262a6e0b375SMatthew G. Knepley . t - The current time 8263a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8264a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8265a6e0b375SMatthew G. Knepley . constants - The value of each constant 8266a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8267a6e0b375SMatthew G. Knepley 8268*73ff1848SBarry Smith Level: intermediate 8269*73ff1848SBarry Smith 8270bb7acecfSBarry Smith Note: 8271bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8272bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8273bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8274a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8275a6e0b375SMatthew G. Knepley 8276bb7acecfSBarry Smith Developer Notes: 8277bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8278bb7acecfSBarry Smith 8279bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8280bb7acecfSBarry Smith 8281a4e35b19SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, 8282a4e35b19SJacob Faibussowitsch `DMProjectFunction()`, `DMComputeL2Diff()` 8283a6e0b375SMatthew G. Knepley @*/ 8284a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLocal(DM dm, PetscReal time, Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8285d71ae5a4SJacob Faibussowitsch { 82868c6c5593SMatthew G. Knepley PetscFunctionBegin; 82878c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8288eb8f539aSJed Brown if (localU) PetscValidHeaderSpecific(localU, VEC_CLASSID, 3); 82898c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(localX, VEC_CLASSID, 6); 8290fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlocal, time, localU, funcs, mode, localX); 82913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82928c6c5593SMatthew G. Knepley } 82938c6c5593SMatthew G. Knepley 8294a6e0b375SMatthew G. Knepley /*@C 8295a6e0b375SMatthew G. Knepley DMProjectFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain specified by the label. 8296a6e0b375SMatthew G. Knepley 829720f4b53cSBarry Smith Not Collective 8298a6e0b375SMatthew G. Knepley 8299a6e0b375SMatthew G. Knepley Input Parameters: 8300bb7acecfSBarry Smith + dm - The `DM` 8301a6e0b375SMatthew G. Knepley . time - The time 8302bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8303a6e0b375SMatthew G. Knepley . numIds - The number of label ids to use 8304a6e0b375SMatthew G. Knepley . ids - The label ids to use for marking 8305bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 830620f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8307a6e0b375SMatthew G. Knepley . localU - The input field vector 8308a6e0b375SMatthew G. Knepley . funcs - The functions to evaluate, one per field 8309a6e0b375SMatthew G. Knepley - mode - The insertion mode for values 8310a6e0b375SMatthew G. Knepley 8311a6e0b375SMatthew G. Knepley Output Parameter: 8312a6e0b375SMatthew G. Knepley . localX - The output vector 8313a6e0b375SMatthew G. Knepley 831420f4b53cSBarry Smith Calling sequence of `funcs`: 8315a6e0b375SMatthew G. Knepley + dim - The spatial dimension 8316a6e0b375SMatthew G. Knepley . Nf - The number of input fields 8317a6e0b375SMatthew G. Knepley . NfAux - The number of input auxiliary fields 8318a6e0b375SMatthew G. Knepley . uOff - The offset of each field in u[] 8319a6e0b375SMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8320a6e0b375SMatthew G. Knepley . u - The field values at this point in space 8321a6e0b375SMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8322a6e0b375SMatthew G. Knepley . u_x - The field derivatives at this point in space 8323a6e0b375SMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8324a6e0b375SMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8325a6e0b375SMatthew G. Knepley . a - The auxiliary field values at this point in space 8326a6e0b375SMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8327a6e0b375SMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8328a6e0b375SMatthew G. Knepley . t - The current time 8329a6e0b375SMatthew G. Knepley . x - The coordinates of this point 8330a6e0b375SMatthew G. Knepley . numConstants - The number of constants 8331a6e0b375SMatthew G. Knepley . constants - The value of each constant 8332a6e0b375SMatthew G. Knepley - f - The value of the function at this point in space 8333a6e0b375SMatthew G. Knepley 8334*73ff1848SBarry Smith Level: intermediate 8335*73ff1848SBarry Smith 8336bb7acecfSBarry Smith Note: 8337bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8338bb7acecfSBarry Smith The input `DM`, attached to localU, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8339bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8340a6e0b375SMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8341a6e0b375SMatthew G. Knepley 8342bb7acecfSBarry Smith Developer Notes: 8343bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8344bb7acecfSBarry Smith 8345bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8346bb7acecfSBarry Smith 83471cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabel()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8348a6e0b375SMatthew G. Knepley @*/ 8349a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8350d71ae5a4SJacob Faibussowitsch { 83518c6c5593SMatthew G. Knepley PetscFunctionBegin; 83528c6c5593SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8353064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8354064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8355fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 83563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 83578c6c5593SMatthew G. Knepley } 83588c6c5593SMatthew G. Knepley 83592716604bSToby Isaac /*@C 8360d29d7c6eSMatthew G. Knepley DMProjectFieldLabel - This projects the given function of the input fields into the function space provided, putting the coefficients in a global vector, calculating only over the portion of the domain specified by the label. 8361d29d7c6eSMatthew G. Knepley 836220f4b53cSBarry Smith Not Collective 8363d29d7c6eSMatthew G. Knepley 8364d29d7c6eSMatthew G. Knepley Input Parameters: 8365bb7acecfSBarry Smith + dm - The `DM` 8366d29d7c6eSMatthew G. Knepley . time - The time 8367bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain to output 8368d29d7c6eSMatthew G. Knepley . numIds - The number of label ids to use 8369d29d7c6eSMatthew G. Knepley . ids - The label ids to use for marking 8370bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 837120f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8372d29d7c6eSMatthew G. Knepley . U - The input field vector 8373d29d7c6eSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8374d29d7c6eSMatthew G. Knepley - mode - The insertion mode for values 8375d29d7c6eSMatthew G. Knepley 8376d29d7c6eSMatthew G. Knepley Output Parameter: 8377d29d7c6eSMatthew G. Knepley . X - The output vector 8378d29d7c6eSMatthew G. Knepley 837920f4b53cSBarry Smith Calling sequence of `funcs`: 8380d29d7c6eSMatthew G. Knepley + dim - The spatial dimension 8381d29d7c6eSMatthew G. Knepley . Nf - The number of input fields 8382d29d7c6eSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8383d29d7c6eSMatthew G. Knepley . uOff - The offset of each field in u[] 8384d29d7c6eSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8385d29d7c6eSMatthew G. Knepley . u - The field values at this point in space 8386d29d7c6eSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8387d29d7c6eSMatthew G. Knepley . u_x - The field derivatives at this point in space 8388d29d7c6eSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8389d29d7c6eSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8390d29d7c6eSMatthew G. Knepley . a - The auxiliary field values at this point in space 8391d29d7c6eSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8392d29d7c6eSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8393d29d7c6eSMatthew G. Knepley . t - The current time 8394d29d7c6eSMatthew G. Knepley . x - The coordinates of this point 8395d29d7c6eSMatthew G. Knepley . numConstants - The number of constants 8396d29d7c6eSMatthew G. Knepley . constants - The value of each constant 8397d29d7c6eSMatthew G. Knepley - f - The value of the function at this point in space 8398d29d7c6eSMatthew G. Knepley 8399*73ff1848SBarry Smith Level: intermediate 8400*73ff1848SBarry Smith 8401bb7acecfSBarry Smith Note: 8402bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8403bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8404bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8405d29d7c6eSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8406d29d7c6eSMatthew G. Knepley 8407bb7acecfSBarry Smith Developer Notes: 8408bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8409bb7acecfSBarry Smith 8410bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8411bb7acecfSBarry Smith 84121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8413d29d7c6eSMatthew G. Knepley @*/ 8414a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectFieldLabel(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec U, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec X) 8415d71ae5a4SJacob Faibussowitsch { 8416d29d7c6eSMatthew G. Knepley DM dmIn; 8417d29d7c6eSMatthew G. Knepley Vec localU, localX; 8418d29d7c6eSMatthew G. Knepley 8419d29d7c6eSMatthew G. Knepley PetscFunctionBegin; 8420d29d7c6eSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8421d29d7c6eSMatthew G. Knepley PetscCall(VecGetDM(U, &dmIn)); 8422d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dmIn, &localU)); 8423d29d7c6eSMatthew G. Knepley PetscCall(DMGetLocalVector(dm, &localX)); 8424f60fa741SMatthew G. Knepley PetscCall(VecSet(localX, 0.)); 842572fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalBegin(dmIn, U, mode, localU)); 842672fc1ce5SMatthew G. Knepley PetscCall(DMGlobalToLocalEnd(dmIn, U, mode, localU)); 8427d29d7c6eSMatthew G. Knepley PetscCall(DMProjectFieldLabelLocal(dm, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX)); 8428d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalBegin(dm, localX, mode, X)); 8429d29d7c6eSMatthew G. Knepley PetscCall(DMLocalToGlobalEnd(dm, localX, mode, X)); 8430d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dm, &localX)); 8431d29d7c6eSMatthew G. Knepley PetscCall(DMRestoreLocalVector(dmIn, &localU)); 84323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8433d29d7c6eSMatthew G. Knepley } 8434d29d7c6eSMatthew G. Knepley 8435d29d7c6eSMatthew G. Knepley /*@C 8436ece3a9fcSMatthew G. Knepley DMProjectBdFieldLabelLocal - This projects the given function of the input fields into the function space provided, putting the coefficients in a local vector, calculating only over the portion of the domain boundary specified by the label. 8437ece3a9fcSMatthew G. Knepley 843820f4b53cSBarry Smith Not Collective 8439ece3a9fcSMatthew G. Knepley 8440ece3a9fcSMatthew G. Knepley Input Parameters: 8441bb7acecfSBarry Smith + dm - The `DM` 8442ece3a9fcSMatthew G. Knepley . time - The time 8443bb7acecfSBarry Smith . label - The `DMLabel` marking the portion of the domain boundary to output 8444ece3a9fcSMatthew G. Knepley . numIds - The number of label ids to use 8445ece3a9fcSMatthew G. Knepley . ids - The label ids to use for marking 8446bb7acecfSBarry Smith . Nc - The number of components to set in the output, or `PETSC_DETERMINE` for all components 844720f4b53cSBarry Smith . comps - The components to set in the output, or `NULL` for all components 8448ece3a9fcSMatthew G. Knepley . localU - The input field vector 8449ece3a9fcSMatthew G. Knepley . funcs - The functions to evaluate, one per field 8450ece3a9fcSMatthew G. Knepley - mode - The insertion mode for values 8451ece3a9fcSMatthew G. Knepley 8452ece3a9fcSMatthew G. Knepley Output Parameter: 8453ece3a9fcSMatthew G. Knepley . localX - The output vector 8454ece3a9fcSMatthew G. Knepley 845520f4b53cSBarry Smith Calling sequence of `funcs`: 8456ece3a9fcSMatthew G. Knepley + dim - The spatial dimension 8457ece3a9fcSMatthew G. Knepley . Nf - The number of input fields 8458ece3a9fcSMatthew G. Knepley . NfAux - The number of input auxiliary fields 8459ece3a9fcSMatthew G. Knepley . uOff - The offset of each field in u[] 8460ece3a9fcSMatthew G. Knepley . uOff_x - The offset of each field in u_x[] 8461ece3a9fcSMatthew G. Knepley . u - The field values at this point in space 8462ece3a9fcSMatthew G. Knepley . u_t - The field time derivative at this point in space (or NULL) 8463ece3a9fcSMatthew G. Knepley . u_x - The field derivatives at this point in space 8464ece3a9fcSMatthew G. Knepley . aOff - The offset of each auxiliary field in u[] 8465ece3a9fcSMatthew G. Knepley . aOff_x - The offset of each auxiliary field in u_x[] 8466ece3a9fcSMatthew G. Knepley . a - The auxiliary field values at this point in space 8467ece3a9fcSMatthew G. Knepley . a_t - The auxiliary field time derivative at this point in space (or NULL) 8468ece3a9fcSMatthew G. Knepley . a_x - The auxiliary field derivatives at this point in space 8469ece3a9fcSMatthew G. Knepley . t - The current time 8470ece3a9fcSMatthew G. Knepley . x - The coordinates of this point 8471ece3a9fcSMatthew G. Knepley . n - The face normal 8472ece3a9fcSMatthew G. Knepley . numConstants - The number of constants 8473ece3a9fcSMatthew G. Knepley . constants - The value of each constant 8474ece3a9fcSMatthew G. Knepley - f - The value of the function at this point in space 8475ece3a9fcSMatthew G. Knepley 8476*73ff1848SBarry Smith Level: intermediate 8477*73ff1848SBarry Smith 8478ece3a9fcSMatthew G. Knepley Note: 8479bb7acecfSBarry Smith There are three different `DM`s that potentially interact in this function. The output `DM`, dm, specifies the layout of the values calculates by funcs. 8480bb7acecfSBarry Smith The input `DM`, attached to U, may be different. For example, you can input the solution over the full domain, but output over a piece of the boundary, or 8481bb7acecfSBarry Smith a subdomain. You can also output a different number of fields than the input, with different discretizations. Last the auxiliary `DM`, attached to the 8482ece3a9fcSMatthew G. Knepley auxiliary field vector, which is attached to dm, can also be different. It can have a different topology, number of fields, and discretizations. 8483ece3a9fcSMatthew G. Knepley 8484bb7acecfSBarry Smith Developer Notes: 8485bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8486bb7acecfSBarry Smith 8487bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8488bb7acecfSBarry Smith 84891cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectField()`, `DMProjectFieldLabelLocal()`, `DMProjectFunction()`, `DMComputeL2Diff()` 8490ece3a9fcSMatthew G. Knepley @*/ 8491a4e35b19SJacob Faibussowitsch PetscErrorCode DMProjectBdFieldLabelLocal(DM dm, PetscReal time, DMLabel label, PetscInt numIds, const PetscInt ids[], PetscInt Nc, const PetscInt comps[], Vec localU, void (**funcs)(PetscInt dim, PetscInt Nf, PetscInt NfAux, const PetscInt uOff[], const PetscInt uOff_x[], const PetscScalar u[], const PetscScalar u_t[], const PetscScalar u_x[], const PetscInt aOff[], const PetscInt aOff_x[], const PetscScalar a[], const PetscScalar a_t[], const PetscScalar a_x[], PetscReal t, const PetscReal x[], const PetscReal n[], PetscInt numConstants, const PetscScalar constants[], PetscScalar f[]), InsertMode mode, Vec localX) 8492d71ae5a4SJacob Faibussowitsch { 8493ece3a9fcSMatthew G. Knepley PetscFunctionBegin; 8494ece3a9fcSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8495064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localU, VEC_CLASSID, 8); 8496064a246eSJacob Faibussowitsch PetscValidHeaderSpecific(localX, VEC_CLASSID, 11); 8497fa1e479aSStefano Zampini PetscUseTypeMethod(dm, projectbdfieldlabellocal, time, label, numIds, ids, Nc, comps, localU, funcs, mode, localX); 84983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8499ece3a9fcSMatthew G. Knepley } 8500ece3a9fcSMatthew G. Knepley 8501ece3a9fcSMatthew G. Knepley /*@C 85022716604bSToby Isaac DMComputeL2Diff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h. 85032716604bSToby Isaac 850420f4b53cSBarry Smith Collective 8505bb7acecfSBarry Smith 85062716604bSToby Isaac Input Parameters: 8507bb7acecfSBarry Smith + dm - The `DM` 85080709b2feSToby Isaac . time - The time 85092716604bSToby Isaac . funcs - The functions to evaluate for each field component 85102716604bSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8511574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85122716604bSToby Isaac 85132716604bSToby Isaac Output Parameter: 85142716604bSToby Isaac . diff - The diff ||u - u_h||_2 85152716604bSToby Isaac 85162716604bSToby Isaac Level: developer 85172716604bSToby Isaac 8518bb7acecfSBarry Smith Developer Notes: 8519bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8520bb7acecfSBarry Smith 8521bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8522bb7acecfSBarry Smith 85231cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2FieldDiff()`, `DMComputeL2GradientDiff()` 85242716604bSToby Isaac @*/ 8525d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2Diff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal *diff) 8526d71ae5a4SJacob Faibussowitsch { 85272716604bSToby Isaac PetscFunctionBegin; 85282716604bSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8529b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8530fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2diff, time, funcs, ctxs, X, diff); 85313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85322716604bSToby Isaac } 8533b698f381SToby Isaac 8534b698f381SToby Isaac /*@C 8535b698f381SToby Isaac DMComputeL2GradientDiff - This function computes the L_2 difference between the gradient of a function u and an FEM interpolant solution grad u_h. 8536b698f381SToby Isaac 853720f4b53cSBarry Smith Collective 8538d083f849SBarry Smith 8539b698f381SToby Isaac Input Parameters: 8540bb7acecfSBarry Smith + dm - The `DM` 8541a4e35b19SJacob Faibussowitsch . time - The time 8542b698f381SToby Isaac . funcs - The gradient functions to evaluate for each field component 8543b698f381SToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8544574a98acSMatthew G. Knepley . X - The coefficient vector u_h, a global vector 8545b698f381SToby Isaac - n - The vector to project along 8546b698f381SToby Isaac 8547b698f381SToby Isaac Output Parameter: 8548b698f381SToby Isaac . diff - The diff ||(grad u - grad u_h) . n||_2 8549b698f381SToby Isaac 8550b698f381SToby Isaac Level: developer 8551b698f381SToby Isaac 8552bb7acecfSBarry Smith Developer Notes: 8553bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8554bb7acecfSBarry Smith 8555bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8556bb7acecfSBarry Smith 85571cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2Diff()`, `DMComputeL2FieldDiff()` 8558b698f381SToby Isaac @*/ 8559d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2GradientDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, const PetscReal n[], PetscReal *diff) 8560d71ae5a4SJacob Faibussowitsch { 8561b698f381SToby Isaac PetscFunctionBegin; 8562b698f381SToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8563b698f381SToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8564fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2gradientdiff, time, funcs, ctxs, X, n, diff); 85653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8566b698f381SToby Isaac } 8567b698f381SToby Isaac 85682a16baeaSToby Isaac /*@C 85692a16baeaSToby Isaac DMComputeL2FieldDiff - This function computes the L_2 difference between a function u and an FEM interpolant solution u_h, separated into field components. 85702a16baeaSToby Isaac 857120f4b53cSBarry Smith Collective 8572d083f849SBarry Smith 85732a16baeaSToby Isaac Input Parameters: 8574bb7acecfSBarry Smith + dm - The `DM` 85752a16baeaSToby Isaac . time - The time 85762a16baeaSToby Isaac . funcs - The functions to evaluate for each field component 85772a16baeaSToby Isaac . ctxs - Optional array of contexts to pass to each function, or NULL. 8578574a98acSMatthew G. Knepley - X - The coefficient vector u_h, a global vector 85792a16baeaSToby Isaac 85802a16baeaSToby Isaac Output Parameter: 85812a16baeaSToby Isaac . diff - The array of differences, ||u^f - u^f_h||_2 85822a16baeaSToby Isaac 85832a16baeaSToby Isaac Level: developer 85842a16baeaSToby Isaac 8585bb7acecfSBarry Smith Developer Notes: 8586bb7acecfSBarry Smith This API is specific to only particular usage of `DM` 8587bb7acecfSBarry Smith 8588bb7acecfSBarry Smith The notes need to provide some information about what has to be provided to the `DM` to be able to perform the computation. 8589bb7acecfSBarry Smith 859042747ad1SJacob Faibussowitsch .seealso: [](ch_dmbase), `DM`, `DMProjectFunction()`, `DMComputeL2GradientDiff()` 85912a16baeaSToby Isaac @*/ 8592d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeL2FieldDiff(DM dm, PetscReal time, PetscErrorCode (**funcs)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void **ctxs, Vec X, PetscReal diff[]) 8593d71ae5a4SJacob Faibussowitsch { 85942a16baeaSToby Isaac PetscFunctionBegin; 85952a16baeaSToby Isaac PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 85962a16baeaSToby Isaac PetscValidHeaderSpecific(X, VEC_CLASSID, 5); 8597fa1e479aSStefano Zampini PetscUseTypeMethod(dm, computel2fielddiff, time, funcs, ctxs, X, diff); 85983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 85992a16baeaSToby Isaac } 86002a16baeaSToby Isaac 8601df0b854cSToby Isaac /*@C 8602bb7acecfSBarry Smith DMGetNeighbors - Gets an array containing the MPI ranks of all the processes neighbors 8603502a2867SDave May 8604502a2867SDave May Not Collective 8605502a2867SDave May 8606502a2867SDave May Input Parameter: 8607bb7acecfSBarry Smith . dm - The `DM` 8608502a2867SDave May 86090a19bb7dSprj- Output Parameters: 86100a19bb7dSprj- + nranks - the number of neighbours 86110a19bb7dSprj- - ranks - the neighbors ranks 8612502a2867SDave May 86139bdbcad8SBarry Smith Level: beginner 86149bdbcad8SBarry Smith 8615bb7acecfSBarry Smith Note: 8616bb7acecfSBarry Smith Do not free the array, it is freed when the `DM` is destroyed. 8617502a2867SDave May 86181cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDAGetNeighbors()`, `PetscSFGetRootRanks()` 8619502a2867SDave May @*/ 8620d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNeighbors(DM dm, PetscInt *nranks, const PetscMPIInt *ranks[]) 8621d71ae5a4SJacob Faibussowitsch { 8622502a2867SDave May PetscFunctionBegin; 8623502a2867SDave May PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8624fa1e479aSStefano Zampini PetscUseTypeMethod(dm, getneighbors, nranks, ranks); 86253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8626502a2867SDave May } 8627502a2867SDave May 8628531c7667SBarry Smith #include <petsc/private/matimpl.h> /* Needed because of coloring->ctype below */ 8629531c7667SBarry Smith 8630531c7667SBarry Smith /* 8631531c7667SBarry Smith Converts the input vector to a ghosted vector and then calls the standard coloring code. 86322b6f951bSStefano Zampini This must be a different function because it requires DM which is not defined in the Mat library 8633531c7667SBarry Smith */ 863466976f2fSJacob Faibussowitsch static PetscErrorCode MatFDColoringApply_AIJDM(Mat J, MatFDColoring coloring, Vec x1, void *sctx) 8635d71ae5a4SJacob Faibussowitsch { 8636531c7667SBarry Smith PetscFunctionBegin; 8637531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8638531c7667SBarry Smith Vec x1local; 8639531c7667SBarry Smith DM dm; 86409566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86417a8be351SBarry Smith PetscCheck(dm, PetscObjectComm((PetscObject)J), PETSC_ERR_ARG_INCOMP, "IS_COLORING_LOCAL requires a DM"); 86429566063dSJacob Faibussowitsch PetscCall(DMGetLocalVector(dm, &x1local)); 86439566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalBegin(dm, x1, INSERT_VALUES, x1local)); 86449566063dSJacob Faibussowitsch PetscCall(DMGlobalToLocalEnd(dm, x1, INSERT_VALUES, x1local)); 8645531c7667SBarry Smith x1 = x1local; 8646531c7667SBarry Smith } 86479566063dSJacob Faibussowitsch PetscCall(MatFDColoringApply_AIJ(J, coloring, x1, sctx)); 8648531c7667SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 8649531c7667SBarry Smith DM dm; 86509566063dSJacob Faibussowitsch PetscCall(MatGetDM(J, &dm)); 86519566063dSJacob Faibussowitsch PetscCall(DMRestoreLocalVector(dm, &x1)); 8652531c7667SBarry Smith } 86533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8654531c7667SBarry Smith } 8655531c7667SBarry Smith 8656531c7667SBarry Smith /*@ 8657bb7acecfSBarry Smith MatFDColoringUseDM - allows a `MatFDColoring` object to use the `DM` associated with the matrix to compute a `IS_COLORING_LOCAL` coloring 8658531c7667SBarry Smith 8659a4e35b19SJacob Faibussowitsch Input Parameters: 8660a4e35b19SJacob Faibussowitsch + coloring - The matrix to get the `DM` from 8661a4e35b19SJacob Faibussowitsch - fdcoloring - the `MatFDColoring` object 8662531c7667SBarry Smith 86639bdbcad8SBarry Smith Level: advanced 86649bdbcad8SBarry Smith 8665*73ff1848SBarry Smith Developer Note: 8666*73ff1848SBarry Smith This routine exists because the PETSc `Mat` library does not know about the `DM` objects 8667531c7667SBarry Smith 86681cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `MatFDColoring`, `MatFDColoringCreate()`, `ISColoringType` 8669531c7667SBarry Smith @*/ 8670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatFDColoringUseDM(Mat coloring, MatFDColoring fdcoloring) 8671d71ae5a4SJacob Faibussowitsch { 8672531c7667SBarry Smith PetscFunctionBegin; 8673531c7667SBarry Smith coloring->ops->fdcoloringapply = MatFDColoringApply_AIJDM; 86743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8675531c7667SBarry Smith } 86768320bc6fSPatrick Sanan 86778320bc6fSPatrick Sanan /*@ 8678bb7acecfSBarry Smith DMGetCompatibility - determine if two `DM`s are compatible 86798320bc6fSPatrick Sanan 86808320bc6fSPatrick Sanan Collective 86818320bc6fSPatrick Sanan 86828320bc6fSPatrick Sanan Input Parameters: 8683bb7acecfSBarry Smith + dm1 - the first `DM` 8684bb7acecfSBarry Smith - dm2 - the second `DM` 86858320bc6fSPatrick Sanan 86868320bc6fSPatrick Sanan Output Parameters: 8687bb7acecfSBarry Smith + compatible - whether or not the two `DM`s are compatible 8688bb7acecfSBarry Smith - set - whether or not the compatible value was actually determined and set 86898320bc6fSPatrick Sanan 869020f4b53cSBarry Smith Level: advanced 869120f4b53cSBarry Smith 86928320bc6fSPatrick Sanan Notes: 8693bb7acecfSBarry Smith Two `DM`s are deemed compatible if they represent the same parallel decomposition 86943d862458SPatrick Sanan of the same topology. This implies that the section (field data) on one 86958320bc6fSPatrick Sanan "makes sense" with respect to the topology and parallel decomposition of the other. 8696bb7acecfSBarry Smith Loosely speaking, compatible `DM`s represent the same domain and parallel 86973d862458SPatrick Sanan decomposition, but hold different data. 86988320bc6fSPatrick Sanan 86998320bc6fSPatrick Sanan Typically, one would confirm compatibility if intending to simultaneously iterate 8700bb7acecfSBarry Smith over a pair of vectors obtained from different `DM`s. 87018320bc6fSPatrick Sanan 8702bb7acecfSBarry Smith For example, two `DMDA` objects are compatible if they have the same local 87038320bc6fSPatrick Sanan and global sizes and the same stencil width. They can have different numbers 87048320bc6fSPatrick Sanan of degrees of freedom per node. Thus, one could use the node numbering from 8705bb7acecfSBarry Smith either `DM` in bounds for a loop over vectors derived from either `DM`. 87068320bc6fSPatrick Sanan 8707bb7acecfSBarry Smith Consider the operation of summing data living on a 2-dof `DMDA` to data living 8708bb7acecfSBarry Smith on a 1-dof `DMDA`, which should be compatible, as in the following snippet. 87098320bc6fSPatrick Sanan .vb 87108320bc6fSPatrick Sanan ... 87119566063dSJacob Faibussowitsch PetscCall(DMGetCompatibility(da1,da2,&compatible,&set)); 87128320bc6fSPatrick Sanan if (set && compatible) { 87139566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da1,vec1,&arr1)); 87149566063dSJacob Faibussowitsch PetscCall(DMDAVecGetArrayDOF(da2,vec2,&arr2)); 87159566063dSJacob Faibussowitsch PetscCall(DMDAGetCorners(da1,&x,&y,NULL,&m,&n,NULL)); 87168320bc6fSPatrick Sanan for (j=y; j<y+n; ++j) { 87178320bc6fSPatrick Sanan for (i=x; i<x+m, ++i) { 87188320bc6fSPatrick Sanan arr1[j][i][0] = arr2[j][i][0] + arr2[j][i][1]; 87198320bc6fSPatrick Sanan } 87208320bc6fSPatrick Sanan } 87219566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da1,vec1,&arr1)); 87229566063dSJacob Faibussowitsch PetscCall(DMDAVecRestoreArrayDOF(da2,vec2,&arr2)); 87238320bc6fSPatrick Sanan } else { 87248320bc6fSPatrick Sanan SETERRQ(PetscObjectComm((PetscObject)da1,PETSC_ERR_ARG_INCOMP,"DMDA objects incompatible"); 87258320bc6fSPatrick Sanan } 87268320bc6fSPatrick Sanan ... 87278320bc6fSPatrick Sanan .ve 87288320bc6fSPatrick Sanan 8729bb7acecfSBarry Smith Checking compatibility might be expensive for a given implementation of `DM`, 87308320bc6fSPatrick Sanan or might be impossible to unambiguously confirm or deny. For this reason, 87318320bc6fSPatrick Sanan this function may decline to determine compatibility, and hence users should 87328320bc6fSPatrick Sanan always check the "set" output parameter. 87338320bc6fSPatrick Sanan 8734bb7acecfSBarry Smith A `DM` is always compatible with itself. 87358320bc6fSPatrick Sanan 8736bb7acecfSBarry Smith In the current implementation, `DM`s which live on "unequal" communicators 87378320bc6fSPatrick Sanan (MPI_UNEQUAL in the terminology of MPI_Comm_compare()) are always deemed 87388320bc6fSPatrick Sanan incompatible. 87398320bc6fSPatrick Sanan 87408320bc6fSPatrick Sanan This function is labeled "Collective," as information about all subdomains 8741bb7acecfSBarry Smith is required on each rank. However, in `DM` implementations which store all this 87428320bc6fSPatrick Sanan information locally, this function may be merely "Logically Collective". 87438320bc6fSPatrick Sanan 8744*73ff1848SBarry Smith Developer Note: 8745bb7acecfSBarry Smith Compatibility is assumed to be a symmetric concept; `DM` A is compatible with `DM` B 87463d862458SPatrick Sanan iff B is compatible with A. Thus, this function checks the implementations 8747a5bc1bf3SBarry Smith of both dm and dmc (if they are of different types), attempting to determine 8748bb7acecfSBarry Smith compatibility. It is left to `DM` implementers to ensure that symmetry is 87498320bc6fSPatrick Sanan preserved. The simplest way to do this is, when implementing type-specific 87503d862458SPatrick Sanan logic for this function, is to check for existing logic in the implementation 8751bb7acecfSBarry Smith of other `DM` types and let *set = PETSC_FALSE if found. 87528320bc6fSPatrick Sanan 87531cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMDACreateCompatibleDMDA()`, `DMStagCreateCompatibleDMStag()` 87548320bc6fSPatrick Sanan @*/ 8755d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetCompatibility(DM dm1, DM dm2, PetscBool *compatible, PetscBool *set) 8756d71ae5a4SJacob Faibussowitsch { 87578320bc6fSPatrick Sanan PetscMPIInt compareResult; 87588320bc6fSPatrick Sanan DMType type, type2; 87598320bc6fSPatrick Sanan PetscBool sameType; 87608320bc6fSPatrick Sanan 87618320bc6fSPatrick Sanan PetscFunctionBegin; 8762a5bc1bf3SBarry Smith PetscValidHeaderSpecific(dm1, DM_CLASSID, 1); 87638320bc6fSPatrick Sanan PetscValidHeaderSpecific(dm2, DM_CLASSID, 2); 87648320bc6fSPatrick Sanan 87658320bc6fSPatrick Sanan /* Declare a DM compatible with itself */ 8766a5bc1bf3SBarry Smith if (dm1 == dm2) { 87678320bc6fSPatrick Sanan *set = PETSC_TRUE; 87688320bc6fSPatrick Sanan *compatible = PETSC_TRUE; 87693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87708320bc6fSPatrick Sanan } 87718320bc6fSPatrick Sanan 87728320bc6fSPatrick Sanan /* Declare a DM incompatible with a DM that lives on an "unequal" 87738320bc6fSPatrick Sanan communicator. Note that this does not preclude compatibility with 87748320bc6fSPatrick Sanan DMs living on "congruent" or "similar" communicators, but this must be 87758320bc6fSPatrick Sanan determined by the implementation-specific logic */ 87769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_compare(PetscObjectComm((PetscObject)dm1), PetscObjectComm((PetscObject)dm2), &compareResult)); 87778320bc6fSPatrick Sanan if (compareResult == MPI_UNEQUAL) { 87788320bc6fSPatrick Sanan *set = PETSC_TRUE; 87798320bc6fSPatrick Sanan *compatible = PETSC_FALSE; 87803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 87818320bc6fSPatrick Sanan } 87828320bc6fSPatrick Sanan 87838320bc6fSPatrick Sanan /* Pass to the implementation-specific routine, if one exists. */ 8784a5bc1bf3SBarry Smith if (dm1->ops->getcompatibility) { 8785dbbe0bcdSBarry Smith PetscUseTypeMethod(dm1, getcompatibility, dm2, compatible, set); 87863ba16761SJacob Faibussowitsch if (*set) PetscFunctionReturn(PETSC_SUCCESS); 87878320bc6fSPatrick Sanan } 87888320bc6fSPatrick Sanan 8789a5bc1bf3SBarry Smith /* If dm1 and dm2 are of different types, then attempt to check compatibility 87908320bc6fSPatrick Sanan with an implementation of this function from dm2 */ 87919566063dSJacob Faibussowitsch PetscCall(DMGetType(dm1, &type)); 87929566063dSJacob Faibussowitsch PetscCall(DMGetType(dm2, &type2)); 87939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(type, type2, &sameType)); 87948320bc6fSPatrick Sanan if (!sameType && dm2->ops->getcompatibility) { 8795dbbe0bcdSBarry Smith PetscUseTypeMethod(dm2, getcompatibility, dm1, compatible, set); /* Note argument order */ 87968320bc6fSPatrick Sanan } else { 87978320bc6fSPatrick Sanan *set = PETSC_FALSE; 87988320bc6fSPatrick Sanan } 87993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88008320bc6fSPatrick Sanan } 8801c0f0dcc3SMatthew G. Knepley 8802c0f0dcc3SMatthew G. Knepley /*@C 8803bb7acecfSBarry Smith DMMonitorSet - Sets an additional monitor function that is to be used after a solve to monitor discretization performance. 8804c0f0dcc3SMatthew G. Knepley 880520f4b53cSBarry Smith Logically Collective 8806c0f0dcc3SMatthew G. Knepley 8807c0f0dcc3SMatthew G. Knepley Input Parameters: 880860225df5SJacob Faibussowitsch + dm - the `DM` 8809c0f0dcc3SMatthew G. Knepley . f - the monitor function 881020f4b53cSBarry Smith . mctx - [optional] user-defined context for private data for the monitor routine (use `NULL` if no context is desired) 881120f4b53cSBarry Smith - monitordestroy - [optional] routine that frees monitor context (may be `NULL`) 8812c0f0dcc3SMatthew G. Knepley 881320f4b53cSBarry Smith Options Database Key: 881460225df5SJacob Faibussowitsch . -dm_monitor_cancel - cancels all monitors that have been hardwired into a code by calls to `DMMonitorSet()`, but 8815c0f0dcc3SMatthew G. Knepley does not cancel those set via the options database. 8816c0f0dcc3SMatthew G. Knepley 88179bdbcad8SBarry Smith Level: intermediate 88189bdbcad8SBarry Smith 8819bb7acecfSBarry Smith Note: 8820c0f0dcc3SMatthew G. Knepley Several different monitoring routines may be set by calling 8821bb7acecfSBarry Smith `DMMonitorSet()` multiple times or with `DMMonitorSetFromOptions()`; all will be called in the 8822c0f0dcc3SMatthew G. Knepley order in which they were set. 8823c0f0dcc3SMatthew G. Knepley 8824*73ff1848SBarry Smith Fortran Note: 8825bb7acecfSBarry Smith Only a single monitor function can be set for each `DM` object 8826bb7acecfSBarry Smith 8827*73ff1848SBarry Smith Developer Note: 8828bb7acecfSBarry Smith This API has a generic name but seems specific to a very particular aspect of the use of `DM` 8829c0f0dcc3SMatthew G. Knepley 88301cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorCancel()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8831c0f0dcc3SMatthew G. Knepley @*/ 8832d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSet(DM dm, PetscErrorCode (*f)(DM, void *), void *mctx, PetscErrorCode (*monitordestroy)(void **)) 8833d71ae5a4SJacob Faibussowitsch { 8834c0f0dcc3SMatthew G. Knepley PetscInt m; 8835c0f0dcc3SMatthew G. Knepley 8836c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8837c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8838c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 8839c0f0dcc3SMatthew G. Knepley PetscBool identical; 8840c0f0dcc3SMatthew G. Knepley 88419566063dSJacob Faibussowitsch PetscCall(PetscMonitorCompare((PetscErrorCode(*)(void))f, mctx, monitordestroy, (PetscErrorCode(*)(void))dm->monitor[m], dm->monitorcontext[m], dm->monitordestroy[m], &identical)); 88423ba16761SJacob Faibussowitsch if (identical) PetscFunctionReturn(PETSC_SUCCESS); 8843c0f0dcc3SMatthew G. Knepley } 88447a8be351SBarry Smith PetscCheck(dm->numbermonitors < MAXDMMONITORS, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Too many monitors set"); 8845c0f0dcc3SMatthew G. Knepley dm->monitor[dm->numbermonitors] = f; 8846c0f0dcc3SMatthew G. Knepley dm->monitordestroy[dm->numbermonitors] = monitordestroy; 8847c0f0dcc3SMatthew G. Knepley dm->monitorcontext[dm->numbermonitors++] = (void *)mctx; 88483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8849c0f0dcc3SMatthew G. Knepley } 8850c0f0dcc3SMatthew G. Knepley 8851c0f0dcc3SMatthew G. Knepley /*@ 8852bb7acecfSBarry Smith DMMonitorCancel - Clears all the monitor functions for a `DM` object. 8853c0f0dcc3SMatthew G. Knepley 885420f4b53cSBarry Smith Logically Collective 8855c0f0dcc3SMatthew G. Knepley 8856c0f0dcc3SMatthew G. Knepley Input Parameter: 8857c0f0dcc3SMatthew G. Knepley . dm - the DM 8858c0f0dcc3SMatthew G. Knepley 8859c0f0dcc3SMatthew G. Knepley Options Database Key: 8860c0f0dcc3SMatthew G. Knepley . -dm_monitor_cancel - cancels all monitors that have been hardwired 8861bb7acecfSBarry Smith into a code by calls to `DMonitorSet()`, but does not cancel those 8862c0f0dcc3SMatthew G. Knepley set via the options database 8863c0f0dcc3SMatthew G. Knepley 88649bdbcad8SBarry Smith Level: intermediate 88659bdbcad8SBarry Smith 8866bb7acecfSBarry Smith Note: 8867bb7acecfSBarry Smith There is no way to clear one specific monitor from a `DM` object. 8868c0f0dcc3SMatthew G. Knepley 88691cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()`, `DMMonitor()` 8870c0f0dcc3SMatthew G. Knepley @*/ 8871d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorCancel(DM dm) 8872d71ae5a4SJacob Faibussowitsch { 8873c0f0dcc3SMatthew G. Knepley PetscInt m; 8874c0f0dcc3SMatthew G. Knepley 8875c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8876c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 8877c0f0dcc3SMatthew G. Knepley for (m = 0; m < dm->numbermonitors; ++m) { 88789566063dSJacob Faibussowitsch if (dm->monitordestroy[m]) PetscCall((*dm->monitordestroy[m])(&dm->monitorcontext[m])); 8879c0f0dcc3SMatthew G. Knepley } 8880c0f0dcc3SMatthew G. Knepley dm->numbermonitors = 0; 88813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8882c0f0dcc3SMatthew G. Knepley } 8883c0f0dcc3SMatthew G. Knepley 8884c0f0dcc3SMatthew G. Knepley /*@C 8885c0f0dcc3SMatthew G. Knepley DMMonitorSetFromOptions - Sets a monitor function and viewer appropriate for the type indicated by the user 8886c0f0dcc3SMatthew G. Knepley 888720f4b53cSBarry Smith Collective 8888c0f0dcc3SMatthew G. Knepley 8889c0f0dcc3SMatthew G. Knepley Input Parameters: 8890bb7acecfSBarry Smith + dm - `DM` object you wish to monitor 8891c0f0dcc3SMatthew G. Knepley . name - the monitor type one is seeking 8892c0f0dcc3SMatthew G. Knepley . help - message indicating what monitoring is done 8893c0f0dcc3SMatthew G. Knepley . manual - manual page for the monitor 8894c0f0dcc3SMatthew G. Knepley . monitor - the monitor function 8895bb7acecfSBarry Smith - monitorsetup - a function that is called once ONLY if the user selected this monitor that may set additional features of the `DM` or `PetscViewer` objects 8896c0f0dcc3SMatthew G. Knepley 8897c0f0dcc3SMatthew G. Knepley Output Parameter: 8898c0f0dcc3SMatthew G. Knepley . flg - Flag set if the monitor was created 8899c0f0dcc3SMatthew G. Knepley 8900c0f0dcc3SMatthew G. Knepley Level: developer 8901c0f0dcc3SMatthew G. Knepley 89021cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `PetscOptionsGetViewer()`, `PetscOptionsGetReal()`, `PetscOptionsHasName()`, `PetscOptionsGetString()`, 8903db781477SPatrick Sanan `PetscOptionsGetIntArray()`, `PetscOptionsGetRealArray()`, `PetscOptionsBool()` 890460225df5SJacob Faibussowitsch `PetscOptionsInt()`, `PetscOptionsString()`, `PetscOptionsReal()`, 8905db781477SPatrick Sanan `PetscOptionsName()`, `PetscOptionsBegin()`, `PetscOptionsEnd()`, `PetscOptionsHeadBegin()`, 8906c2e3fba1SPatrick Sanan `PetscOptionsStringArray()`, `PetscOptionsRealArray()`, `PetscOptionsScalar()`, 8907db781477SPatrick Sanan `PetscOptionsBoolGroupBegin()`, `PetscOptionsBoolGroup()`, `PetscOptionsBoolGroupEnd()`, 8908bb7acecfSBarry Smith `PetscOptionsFList()`, `PetscOptionsEList()`, `DMMonitor()`, `DMMonitorSet()` 8909c0f0dcc3SMatthew G. Knepley @*/ 8910d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitorSetFromOptions(DM dm, const char name[], const char help[], const char manual[], PetscErrorCode (*monitor)(DM, void *), PetscErrorCode (*monitorsetup)(DM, PetscViewerAndFormat *), PetscBool *flg) 8911d71ae5a4SJacob Faibussowitsch { 8912c0f0dcc3SMatthew G. Knepley PetscViewer viewer; 8913c0f0dcc3SMatthew G. Knepley PetscViewerFormat format; 8914c0f0dcc3SMatthew G. Knepley 8915c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 8916c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 89179566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetViewer(PetscObjectComm((PetscObject)dm), ((PetscObject)dm)->options, ((PetscObject)dm)->prefix, name, &viewer, &format, flg)); 8918c0f0dcc3SMatthew G. Knepley if (*flg) { 8919c0f0dcc3SMatthew G. Knepley PetscViewerAndFormat *vf; 8920c0f0dcc3SMatthew G. Knepley 89219566063dSJacob Faibussowitsch PetscCall(PetscViewerAndFormatCreate(viewer, format, &vf)); 8922cd791dc2SBarry Smith PetscCall(PetscOptionsRestoreViewer(&viewer)); 89239566063dSJacob Faibussowitsch if (monitorsetup) PetscCall((*monitorsetup)(dm, vf)); 89249566063dSJacob Faibussowitsch PetscCall(DMMonitorSet(dm, (PetscErrorCode(*)(DM, void *))monitor, vf, (PetscErrorCode(*)(void **))PetscViewerAndFormatDestroy)); 8925c0f0dcc3SMatthew G. Knepley } 89263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8927c0f0dcc3SMatthew G. Knepley } 8928c0f0dcc3SMatthew G. Knepley 8929c0f0dcc3SMatthew G. Knepley /*@ 8930c0f0dcc3SMatthew G. Knepley DMMonitor - runs the user provided monitor routines, if they exist 8931c0f0dcc3SMatthew G. Knepley 893220f4b53cSBarry Smith Collective 8933c0f0dcc3SMatthew G. Knepley 89342fe279fdSBarry Smith Input Parameter: 8935bb7acecfSBarry Smith . dm - The `DM` 8936c0f0dcc3SMatthew G. Knepley 8937c0f0dcc3SMatthew G. Knepley Level: developer 8938c0f0dcc3SMatthew G. Knepley 8939*73ff1848SBarry Smith Developer Note: 8940a4e35b19SJacob Faibussowitsch Note should indicate when during the life of the `DM` the monitor is run. It appears to be 8941a4e35b19SJacob Faibussowitsch related to the discretization process seems rather specialized since some `DM` have no 8942a4e35b19SJacob Faibussowitsch concept of discretization. 8943bb7acecfSBarry Smith 89441cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMMonitorSetFromOptions()` 8945c0f0dcc3SMatthew G. Knepley @*/ 8946d71ae5a4SJacob Faibussowitsch PetscErrorCode DMMonitor(DM dm) 8947d71ae5a4SJacob Faibussowitsch { 8948c0f0dcc3SMatthew G. Knepley PetscInt m; 8949c0f0dcc3SMatthew G. Knepley 8950c0f0dcc3SMatthew G. Knepley PetscFunctionBegin; 89513ba16761SJacob Faibussowitsch if (!dm) PetscFunctionReturn(PETSC_SUCCESS); 8952c0f0dcc3SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 895348a46eb9SPierre Jolivet for (m = 0; m < dm->numbermonitors; ++m) PetscCall((*dm->monitor[m])(dm, dm->monitorcontext[m])); 89543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8955c0f0dcc3SMatthew G. Knepley } 89562e4af2aeSMatthew G. Knepley 89572e4af2aeSMatthew G. Knepley /*@ 8958bb7acecfSBarry Smith DMComputeError - Computes the error assuming the user has provided the exact solution functions 89592e4af2aeSMatthew G. Knepley 896020f4b53cSBarry Smith Collective 89612e4af2aeSMatthew G. Knepley 89622e4af2aeSMatthew G. Knepley Input Parameters: 8963bb7acecfSBarry Smith + dm - The `DM` 89646b867d5aSJose E. Roman - sol - The solution vector 89652e4af2aeSMatthew G. Knepley 89666b867d5aSJose E. Roman Input/Output Parameter: 896720f4b53cSBarry Smith . errors - An array of length Nf, the number of fields, or `NULL` for no output; on output 89686b867d5aSJose E. Roman contains the error in each field 89696b867d5aSJose E. Roman 89706b867d5aSJose E. Roman Output Parameter: 897120f4b53cSBarry Smith . errorVec - A vector to hold the cellwise error (may be `NULL`) 897220f4b53cSBarry Smith 897320f4b53cSBarry Smith Level: developer 89742e4af2aeSMatthew G. Knepley 8975bb7acecfSBarry Smith Note: 8976bb7acecfSBarry Smith The exact solutions come from the `PetscDS` object, and the time comes from `DMGetOutputSequenceNumber()`. 89772e4af2aeSMatthew G. Knepley 89781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMMonitorSet()`, `DMGetRegionNumDS()`, `PetscDSGetExactSolution()`, `DMGetOutputSequenceNumber()` 89792e4af2aeSMatthew G. Knepley @*/ 8980d71ae5a4SJacob Faibussowitsch PetscErrorCode DMComputeError(DM dm, Vec sol, PetscReal errors[], Vec *errorVec) 8981d71ae5a4SJacob Faibussowitsch { 89822e4af2aeSMatthew G. Knepley PetscErrorCode (**exactSol)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar[], void *); 89832e4af2aeSMatthew G. Knepley void **ctxs; 89842e4af2aeSMatthew G. Knepley PetscReal time; 89852e4af2aeSMatthew G. Knepley PetscInt Nf, f, Nds, s; 89862e4af2aeSMatthew G. Knepley 89872e4af2aeSMatthew G. Knepley PetscFunctionBegin; 89889566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 89899566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(Nf, &exactSol, Nf, &ctxs)); 89909566063dSJacob Faibussowitsch PetscCall(DMGetNumDS(dm, &Nds)); 89912e4af2aeSMatthew G. Knepley for (s = 0; s < Nds; ++s) { 89922e4af2aeSMatthew G. Knepley PetscDS ds; 89932e4af2aeSMatthew G. Knepley DMLabel label; 89942e4af2aeSMatthew G. Knepley IS fieldIS; 89952e4af2aeSMatthew G. Knepley const PetscInt *fields; 89962e4af2aeSMatthew G. Knepley PetscInt dsNf; 89972e4af2aeSMatthew G. Knepley 899807218a29SMatthew G. Knepley PetscCall(DMGetRegionNumDS(dm, s, &label, &fieldIS, &ds, NULL)); 89999566063dSJacob Faibussowitsch PetscCall(PetscDSGetNumFields(ds, &dsNf)); 90009566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISGetIndices(fieldIS, &fields)); 90012e4af2aeSMatthew G. Knepley for (f = 0; f < dsNf; ++f) { 90022e4af2aeSMatthew G. Knepley const PetscInt field = fields[f]; 90039566063dSJacob Faibussowitsch PetscCall(PetscDSGetExactSolution(ds, field, &exactSol[field], &ctxs[field])); 90042e4af2aeSMatthew G. Knepley } 90059566063dSJacob Faibussowitsch if (fieldIS) PetscCall(ISRestoreIndices(fieldIS, &fields)); 90062e4af2aeSMatthew G. Knepley } 9007ad540459SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCheck(exactSol[f], PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "DS must contain exact solution functions in order to calculate error, missing for field %" PetscInt_FMT, f); 90089566063dSJacob Faibussowitsch PetscCall(DMGetOutputSequenceNumber(dm, NULL, &time)); 90099566063dSJacob Faibussowitsch if (errors) PetscCall(DMComputeL2FieldDiff(dm, time, exactSol, ctxs, sol, errors)); 90102e4af2aeSMatthew G. Knepley if (errorVec) { 90112e4af2aeSMatthew G. Knepley DM edm; 90122e4af2aeSMatthew G. Knepley DMPolytopeType ct; 90132e4af2aeSMatthew G. Knepley PetscBool simplex; 90142e4af2aeSMatthew G. Knepley PetscInt dim, cStart, Nf; 90152e4af2aeSMatthew G. Knepley 90169566063dSJacob Faibussowitsch PetscCall(DMClone(dm, &edm)); 90179566063dSJacob Faibussowitsch PetscCall(DMGetDimension(edm, &dim)); 90189566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, NULL)); 90199566063dSJacob Faibussowitsch PetscCall(DMPlexGetCellType(dm, cStart, &ct)); 90202e4af2aeSMatthew G. Knepley simplex = DMPolytopeTypeGetNumVertices(ct) == DMPolytopeTypeGetDim(ct) + 1 ? PETSC_TRUE : PETSC_FALSE; 90219566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &Nf)); 90222e4af2aeSMatthew G. Knepley for (f = 0; f < Nf; ++f) { 90232e4af2aeSMatthew G. Knepley PetscFE fe, efe; 90242e4af2aeSMatthew G. Knepley PetscQuadrature q; 90252e4af2aeSMatthew G. Knepley const char *name; 90262e4af2aeSMatthew G. Knepley 90279566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 90289566063dSJacob Faibussowitsch PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, Nf, simplex, 0, PETSC_DETERMINE, &efe)); 90299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)fe, &name)); 90309566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)efe, name)); 90319566063dSJacob Faibussowitsch PetscCall(PetscFEGetQuadrature(fe, &q)); 90329566063dSJacob Faibussowitsch PetscCall(PetscFESetQuadrature(efe, q)); 90339566063dSJacob Faibussowitsch PetscCall(DMSetField(edm, f, NULL, (PetscObject)efe)); 90349566063dSJacob Faibussowitsch PetscCall(PetscFEDestroy(&efe)); 90352e4af2aeSMatthew G. Knepley } 90369566063dSJacob Faibussowitsch PetscCall(DMCreateDS(edm)); 90372e4af2aeSMatthew G. Knepley 90389566063dSJacob Faibussowitsch PetscCall(DMCreateGlobalVector(edm, errorVec)); 90399566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)*errorVec, "Error")); 90409566063dSJacob Faibussowitsch PetscCall(DMPlexComputeL2DiffVec(dm, time, exactSol, ctxs, sol, *errorVec)); 90419566063dSJacob Faibussowitsch PetscCall(DMDestroy(&edm)); 90422e4af2aeSMatthew G. Knepley } 90439566063dSJacob Faibussowitsch PetscCall(PetscFree2(exactSol, ctxs)); 90443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90452e4af2aeSMatthew G. Knepley } 90469a2a23afSMatthew G. Knepley 90479a2a23afSMatthew G. Knepley /*@ 9048bb7acecfSBarry Smith DMGetNumAuxiliaryVec - Get the number of auxiliary vectors associated with this `DM` 90499a2a23afSMatthew G. Knepley 905020f4b53cSBarry Smith Not Collective 90519a2a23afSMatthew G. Knepley 90529a2a23afSMatthew G. Knepley Input Parameter: 9053bb7acecfSBarry Smith . dm - The `DM` 90549a2a23afSMatthew G. Knepley 90559a2a23afSMatthew G. Knepley Output Parameter: 9056a5b23f4aSJose E. Roman . numAux - The number of auxiliary data vectors 90579a2a23afSMatthew G. Knepley 90589a2a23afSMatthew G. Knepley Level: advanced 90599a2a23afSMatthew G. Knepley 9060e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMGetAuxiliaryVec()` 90619a2a23afSMatthew G. Knepley @*/ 9062d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetNumAuxiliaryVec(DM dm, PetscInt *numAux) 9063d71ae5a4SJacob Faibussowitsch { 90649a2a23afSMatthew G. Knepley PetscFunctionBegin; 90659a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90669566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetSize(dm->auxData, numAux)); 90673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90689a2a23afSMatthew G. Knepley } 90699a2a23afSMatthew G. Knepley 90709a2a23afSMatthew G. Knepley /*@ 9071ac17215fSMatthew G. Knepley DMGetAuxiliaryVec - Get the auxiliary vector for region specified by the given label and value, and equation part 90729a2a23afSMatthew G. Knepley 907320f4b53cSBarry Smith Not Collective 90749a2a23afSMatthew G. Knepley 90759a2a23afSMatthew G. Knepley Input Parameters: 9076bb7acecfSBarry Smith + dm - The `DM` 9077bb7acecfSBarry Smith . label - The `DMLabel` 9078ac17215fSMatthew G. Knepley . value - The label value indicating the region 9079ac17215fSMatthew G. Knepley - part - The equation part, or 0 if unused 90809a2a23afSMatthew G. Knepley 90819a2a23afSMatthew G. Knepley Output Parameter: 9082bb7acecfSBarry Smith . aux - The `Vec` holding auxiliary field data 90839a2a23afSMatthew G. Knepley 90849bdbcad8SBarry Smith Level: advanced 90859bdbcad8SBarry Smith 9086bb7acecfSBarry Smith Note: 9087bb7acecfSBarry Smith If no auxiliary vector is found for this (label, value), (NULL, 0, 0) is checked as well. 908804c51a94SMatthew G. Knepley 9089e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryLabels()` 90909a2a23afSMatthew G. Knepley @*/ 9091d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec *aux) 9092d71ae5a4SJacob Faibussowitsch { 9093ac17215fSMatthew G. Knepley PetscHashAuxKey key, wild = {NULL, 0, 0}; 909404c51a94SMatthew G. Knepley PetscBool has; 90959a2a23afSMatthew G. Knepley 90969a2a23afSMatthew G. Knepley PetscFunctionBegin; 90979a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 90989a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 90999a2a23afSMatthew G. Knepley key.label = label; 91009a2a23afSMatthew G. Knepley key.value = value; 9101ac17215fSMatthew G. Knepley key.part = part; 91029566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxHas(dm->auxData, key, &has)); 91039566063dSJacob Faibussowitsch if (has) PetscCall(PetscHMapAuxGet(dm->auxData, key, aux)); 91049566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxGet(dm->auxData, wild, aux)); 91053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91069a2a23afSMatthew G. Knepley } 91079a2a23afSMatthew G. Knepley 91089a2a23afSMatthew G. Knepley /*@ 9109bb7acecfSBarry Smith DMSetAuxiliaryVec - Set an auxiliary vector for region specified by the given label and value, and equation part 91109a2a23afSMatthew G. Knepley 911120f4b53cSBarry Smith Not Collective because auxiliary vectors are not parallel 91129a2a23afSMatthew G. Knepley 91139a2a23afSMatthew G. Knepley Input Parameters: 9114bb7acecfSBarry Smith + dm - The `DM` 9115bb7acecfSBarry Smith . label - The `DMLabel` 91169a2a23afSMatthew G. Knepley . value - The label value indicating the region 9117ac17215fSMatthew G. Knepley . part - The equation part, or 0 if unused 9118bb7acecfSBarry Smith - aux - The `Vec` holding auxiliary field data 91199a2a23afSMatthew G. Knepley 91209a2a23afSMatthew G. Knepley Level: advanced 91219a2a23afSMatthew G. Knepley 9122e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMGetAuxiliaryLabels()`, `DMCopyAuxiliaryVec()` 91239a2a23afSMatthew G. Knepley @*/ 9124d71ae5a4SJacob Faibussowitsch PetscErrorCode DMSetAuxiliaryVec(DM dm, DMLabel label, PetscInt value, PetscInt part, Vec aux) 9125d71ae5a4SJacob Faibussowitsch { 91269a2a23afSMatthew G. Knepley Vec old; 91279a2a23afSMatthew G. Knepley PetscHashAuxKey key; 91289a2a23afSMatthew G. Knepley 91299a2a23afSMatthew G. Knepley PetscFunctionBegin; 91309a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91319a2a23afSMatthew G. Knepley if (label) PetscValidHeaderSpecific(label, DMLABEL_CLASSID, 2); 91329a2a23afSMatthew G. Knepley key.label = label; 91339a2a23afSMatthew G. Knepley key.value = value; 9134ac17215fSMatthew G. Knepley key.part = part; 91359566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGet(dm->auxData, key, &old)); 91369566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)aux)); 91379566063dSJacob Faibussowitsch if (!aux) PetscCall(PetscHMapAuxDel(dm->auxData, key)); 91389566063dSJacob Faibussowitsch else PetscCall(PetscHMapAuxSet(dm->auxData, key, aux)); 9139d705d0eaSStefano Zampini PetscCall(VecDestroy(&old)); 91403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91419a2a23afSMatthew G. Knepley } 91429a2a23afSMatthew G. Knepley 91439a2a23afSMatthew G. Knepley /*@C 9144bb7acecfSBarry Smith DMGetAuxiliaryLabels - Get the labels, values, and parts for all auxiliary vectors in this `DM` 91459a2a23afSMatthew G. Knepley 914620f4b53cSBarry Smith Not Collective 91479a2a23afSMatthew G. Knepley 91489a2a23afSMatthew G. Knepley Input Parameter: 9149bb7acecfSBarry Smith . dm - The `DM` 91509a2a23afSMatthew G. Knepley 91519a2a23afSMatthew G. Knepley Output Parameters: 9152bb7acecfSBarry Smith + labels - The `DMLabel`s for each `Vec` 9153bb7acecfSBarry Smith . values - The label values for each `Vec` 9154bb7acecfSBarry Smith - parts - The equation parts for each `Vec` 91559a2a23afSMatthew G. Knepley 91569bdbcad8SBarry Smith Level: advanced 91579bdbcad8SBarry Smith 9158bb7acecfSBarry Smith Note: 9159bb7acecfSBarry Smith The arrays passed in must be at least as large as `DMGetNumAuxiliaryVec()`. 91609a2a23afSMatthew G. Knepley 9161e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()`, `DMCopyAuxiliaryVec()` 91629a2a23afSMatthew G. Knepley @*/ 9163d71ae5a4SJacob Faibussowitsch PetscErrorCode DMGetAuxiliaryLabels(DM dm, DMLabel labels[], PetscInt values[], PetscInt parts[]) 9164d71ae5a4SJacob Faibussowitsch { 91659a2a23afSMatthew G. Knepley PetscHashAuxKey *keys; 91669a2a23afSMatthew G. Knepley PetscInt n, i, off = 0; 91679a2a23afSMatthew G. Knepley 91689a2a23afSMatthew G. Knepley PetscFunctionBegin; 91699a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 91704f572ea9SToby Isaac PetscAssertPointer(labels, 2); 91714f572ea9SToby Isaac PetscAssertPointer(values, 3); 91724f572ea9SToby Isaac PetscAssertPointer(parts, 4); 91739566063dSJacob Faibussowitsch PetscCall(DMGetNumAuxiliaryVec(dm, &n)); 91749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &keys)); 91759566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxGetKeys(dm->auxData, &off, keys)); 91769371c9d4SSatish Balay for (i = 0; i < n; ++i) { 91779371c9d4SSatish Balay labels[i] = keys[i].label; 91789371c9d4SSatish Balay values[i] = keys[i].value; 91799371c9d4SSatish Balay parts[i] = keys[i].part; 91809371c9d4SSatish Balay } 91819566063dSJacob Faibussowitsch PetscCall(PetscFree(keys)); 91823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91839a2a23afSMatthew G. Knepley } 91849a2a23afSMatthew G. Knepley 91859a2a23afSMatthew G. Knepley /*@ 9186bb7acecfSBarry Smith DMCopyAuxiliaryVec - Copy the auxiliary vector data on a `DM` to a new `DM` 91879a2a23afSMatthew G. Knepley 918820f4b53cSBarry Smith Not Collective 91899a2a23afSMatthew G. Knepley 91909a2a23afSMatthew G. Knepley Input Parameter: 9191bb7acecfSBarry Smith . dm - The `DM` 91929a2a23afSMatthew G. Knepley 91939a2a23afSMatthew G. Knepley Output Parameter: 9194bb7acecfSBarry Smith . dmNew - The new `DM`, now with the same auxiliary data 91959a2a23afSMatthew G. Knepley 91969a2a23afSMatthew G. Knepley Level: advanced 91979a2a23afSMatthew G. Knepley 9198bb7acecfSBarry Smith Note: 9199bb7acecfSBarry Smith This is a shallow copy of the auxiliary vectors 9200bb7acecfSBarry Smith 9201e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMClearAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 92029a2a23afSMatthew G. Knepley @*/ 9203d71ae5a4SJacob Faibussowitsch PetscErrorCode DMCopyAuxiliaryVec(DM dm, DM dmNew) 9204d71ae5a4SJacob Faibussowitsch { 92059a2a23afSMatthew G. Knepley PetscFunctionBegin; 92069a2a23afSMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9207d705d0eaSStefano Zampini PetscValidHeaderSpecific(dmNew, DM_CLASSID, 2); 9208d705d0eaSStefano Zampini if (dm == dmNew) PetscFunctionReturn(PETSC_SUCCESS); 9209e4d5475eSStefano Zampini PetscCall(DMClearAuxiliaryVec(dmNew)); 9210e4d5475eSStefano Zampini 9211e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dmNew->auxData)); 92129566063dSJacob Faibussowitsch PetscCall(PetscHMapAuxDuplicate(dm->auxData, &dmNew->auxData)); 9213d705d0eaSStefano Zampini { 9214d705d0eaSStefano Zampini Vec *auxData; 9215d705d0eaSStefano Zampini PetscInt n, i, off = 0; 9216d705d0eaSStefano Zampini 9217d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetSize(dmNew->auxData, &n)); 9218d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9219d705d0eaSStefano Zampini PetscCall(PetscHMapAuxGetVals(dmNew->auxData, &off, auxData)); 9220d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(PetscObjectReference((PetscObject)auxData[i])); 9221d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9222e4d5475eSStefano Zampini } 9223e4d5475eSStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 9224e4d5475eSStefano Zampini } 9225e4d5475eSStefano Zampini 9226e4d5475eSStefano Zampini /*@ 9227e4d5475eSStefano Zampini DMClearAuxiliaryVec - Destroys the auxiliary vector information and creates a new empty one 9228e4d5475eSStefano Zampini 9229e4d5475eSStefano Zampini Not Collective 9230e4d5475eSStefano Zampini 9231e4d5475eSStefano Zampini Input Parameter: 9232e4d5475eSStefano Zampini . dm - The `DM` 9233e4d5475eSStefano Zampini 9234e4d5475eSStefano Zampini Level: advanced 9235e4d5475eSStefano Zampini 9236e4d5475eSStefano Zampini .seealso: [](ch_dmbase), `DM`, `DMCopyAuxiliaryVec()`, `DMGetNumAuxiliaryVec()`, `DMGetAuxiliaryVec()`, `DMSetAuxiliaryVec()` 9237e4d5475eSStefano Zampini @*/ 9238e4d5475eSStefano Zampini PetscErrorCode DMClearAuxiliaryVec(DM dm) 9239e4d5475eSStefano Zampini { 9240e4d5475eSStefano Zampini Vec *auxData; 9241e4d5475eSStefano Zampini PetscInt n, i, off = 0; 9242e4d5475eSStefano Zampini 9243e4d5475eSStefano Zampini PetscFunctionBegin; 9244e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetSize(dm->auxData, &n)); 9245d705d0eaSStefano Zampini PetscCall(PetscMalloc1(n, &auxData)); 9246e4d5475eSStefano Zampini PetscCall(PetscHMapAuxGetVals(dm->auxData, &off, auxData)); 9247d705d0eaSStefano Zampini for (i = 0; i < n; ++i) PetscCall(VecDestroy(&auxData[i])); 9248d705d0eaSStefano Zampini PetscCall(PetscFree(auxData)); 9249e4d5475eSStefano Zampini PetscCall(PetscHMapAuxDestroy(&dm->auxData)); 9250e4d5475eSStefano Zampini PetscCall(PetscHMapAuxCreate(&dm->auxData)); 92513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92529a2a23afSMatthew G. Knepley } 9253b5a892a1SMatthew G. Knepley 9254b5a892a1SMatthew G. Knepley /*@C 9255bb7acecfSBarry Smith DMPolytopeMatchOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9256b5a892a1SMatthew G. Knepley 925720f4b53cSBarry Smith Not Collective 9258b5a892a1SMatthew G. Knepley 9259b5a892a1SMatthew G. Knepley Input Parameters: 9260bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9261b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9262b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9263b5a892a1SMatthew G. Knepley 9264b5a892a1SMatthew G. Knepley Output Parameters: 9265bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9266b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9267b5a892a1SMatthew G. Knepley 9268b5a892a1SMatthew G. Knepley Level: advanced 9269b5a892a1SMatthew G. Knepley 9270bb7acecfSBarry Smith Note: 9271bb7acecfSBarry Smith An arrangement is a face order combined with an orientation for each face 9272bb7acecfSBarry Smith 927385036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9274bb7acecfSBarry Smith that labels each arrangement (face ordering plus orientation for each face). 9275bb7acecfSBarry Smith 9276bb7acecfSBarry Smith See `DMPolytopeMatchVertexOrientation()` to find a new vertex orientation that takes the source vertex arrangement to the target vertex arrangement 9277bb7acecfSBarry Smith 92781cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetVertexOrientation()` 9279b5a892a1SMatthew G. Knepley @*/ 9280d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt, PetscBool *found) 9281d71ae5a4SJacob Faibussowitsch { 9282b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetConeSize(ct); 928385036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9284b5a892a1SMatthew G. Knepley PetscInt o, c; 9285b5a892a1SMatthew G. Knepley 9286b5a892a1SMatthew G. Knepley PetscFunctionBegin; 92879371c9d4SSatish Balay if (!nO) { 92889371c9d4SSatish Balay *ornt = 0; 92899371c9d4SSatish Balay *found = PETSC_TRUE; 92903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92919371c9d4SSatish Balay } 9292b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 929385036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetArrangement(ct, o); 9294b5a892a1SMatthew G. Knepley 92959371c9d4SSatish Balay for (c = 0; c < cS; ++c) 92969371c9d4SSatish Balay if (sourceCone[arr[c * 2]] != targetCone[c]) break; 92979371c9d4SSatish Balay if (c == cS) { 92989371c9d4SSatish Balay *ornt = o; 92999371c9d4SSatish Balay break; 93009371c9d4SSatish Balay } 9301b5a892a1SMatthew G. Knepley } 9302b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9304b5a892a1SMatthew G. Knepley } 9305b5a892a1SMatthew G. Knepley 9306b5a892a1SMatthew G. Knepley /*@C 9307bb7acecfSBarry Smith DMPolytopeGetOrientation - Determine an orientation (transformation) that takes the source face arrangement to the target face arrangement 9308b5a892a1SMatthew G. Knepley 930920f4b53cSBarry Smith Not Collective 9310b5a892a1SMatthew G. Knepley 9311b5a892a1SMatthew G. Knepley Input Parameters: 9312bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9313b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of faces 9314b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of faces 9315b5a892a1SMatthew G. Knepley 93162fe279fdSBarry Smith Output Parameter: 9317bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9318b5a892a1SMatthew G. Knepley 9319b5a892a1SMatthew G. Knepley Level: advanced 9320b5a892a1SMatthew G. Knepley 9321bb7acecfSBarry Smith Note: 9322bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchOrientation()` except it will generate an error if no suitable orientation can be found. 9323bb7acecfSBarry Smith 9324*73ff1848SBarry Smith Developer Note: 9325bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchOrientation()` and error if none is found 9326bb7acecfSBarry Smith 93271cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchOrientation()`, `DMPolytopeGetVertexOrientation()`, `DMPolytopeMatchVertexOrientation()` 9328b5a892a1SMatthew G. Knepley @*/ 9329d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9330d71ae5a4SJacob Faibussowitsch { 9331b5a892a1SMatthew G. Knepley PetscBool found; 9332b5a892a1SMatthew G. Knepley 9333b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93349566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchOrientation(ct, sourceCone, targetCone, ornt, &found)); 93357a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 93363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9337b5a892a1SMatthew G. Knepley } 9338b5a892a1SMatthew G. Knepley 9339b5a892a1SMatthew G. Knepley /*@C 9340bb7acecfSBarry Smith DMPolytopeMatchVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9341b5a892a1SMatthew G. Knepley 934220f4b53cSBarry Smith Not Collective 9343b5a892a1SMatthew G. Knepley 9344b5a892a1SMatthew G. Knepley Input Parameters: 9345bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9346b5a892a1SMatthew G. Knepley . sourceVert - The source arrangement of vertices 9347b5a892a1SMatthew G. Knepley - targetVert - The target arrangement of vertices 9348b5a892a1SMatthew G. Knepley 9349b5a892a1SMatthew G. Knepley Output Parameters: 9350bb7acecfSBarry Smith + ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9351b5a892a1SMatthew G. Knepley - found - Flag indicating that a suitable orientation was found 9352b5a892a1SMatthew G. Knepley 9353b5a892a1SMatthew G. Knepley Level: advanced 9354b5a892a1SMatthew G. Knepley 9355*73ff1848SBarry Smith Notes: 9356bb7acecfSBarry Smith An arrangement is a vertex order 9357bb7acecfSBarry Smith 935885036b15SMatthew G. Knepley Each orientation (transformation) is labeled with an integer from negative `DMPolytopeTypeGetNumArrangements(ct)`/2 to `DMPolytopeTypeGetNumArrangements(ct)`/2 9359bb7acecfSBarry Smith that labels each arrangement (vertex ordering). 9360bb7acecfSBarry Smith 9361bb7acecfSBarry Smith See `DMPolytopeMatchOrientation()` to find a new face orientation that takes the source face arrangement to the target face arrangement 9362bb7acecfSBarry Smith 936385036b15SMatthew G. Knepley .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeGetOrientation()`, `DMPolytopeMatchOrientation()`, `DMPolytopeTypeGetNumVertices()`, `DMPolytopeTypeGetVertexArrangement()` 9364b5a892a1SMatthew G. Knepley @*/ 9365d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeMatchVertexOrientation(DMPolytopeType ct, const PetscInt sourceVert[], const PetscInt targetVert[], PetscInt *ornt, PetscBool *found) 9366d71ae5a4SJacob Faibussowitsch { 9367b5a892a1SMatthew G. Knepley const PetscInt cS = DMPolytopeTypeGetNumVertices(ct); 936885036b15SMatthew G. Knepley const PetscInt nO = DMPolytopeTypeGetNumArrangements(ct) / 2; 9369b5a892a1SMatthew G. Knepley PetscInt o, c; 9370b5a892a1SMatthew G. Knepley 9371b5a892a1SMatthew G. Knepley PetscFunctionBegin; 93729371c9d4SSatish Balay if (!nO) { 93739371c9d4SSatish Balay *ornt = 0; 93749371c9d4SSatish Balay *found = PETSC_TRUE; 93753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93769371c9d4SSatish Balay } 9377b5a892a1SMatthew G. Knepley for (o = -nO; o < nO; ++o) { 937885036b15SMatthew G. Knepley const PetscInt *arr = DMPolytopeTypeGetVertexArrangement(ct, o); 9379b5a892a1SMatthew G. Knepley 93809371c9d4SSatish Balay for (c = 0; c < cS; ++c) 93819371c9d4SSatish Balay if (sourceVert[arr[c]] != targetVert[c]) break; 93829371c9d4SSatish Balay if (c == cS) { 93839371c9d4SSatish Balay *ornt = o; 93849371c9d4SSatish Balay break; 93859371c9d4SSatish Balay } 9386b5a892a1SMatthew G. Knepley } 9387b5a892a1SMatthew G. Knepley *found = o == nO ? PETSC_FALSE : PETSC_TRUE; 93883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9389b5a892a1SMatthew G. Knepley } 9390b5a892a1SMatthew G. Knepley 9391b5a892a1SMatthew G. Knepley /*@C 9392bb7acecfSBarry Smith DMPolytopeGetVertexOrientation - Determine an orientation (transformation) that takes the source vertex arrangement to the target vertex arrangement 9393b5a892a1SMatthew G. Knepley 939420f4b53cSBarry Smith Not Collective 9395b5a892a1SMatthew G. Knepley 9396b5a892a1SMatthew G. Knepley Input Parameters: 9397bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9398b5a892a1SMatthew G. Knepley . sourceCone - The source arrangement of vertices 9399b5a892a1SMatthew G. Knepley - targetCone - The target arrangement of vertices 9400b5a892a1SMatthew G. Knepley 94012fe279fdSBarry Smith Output Parameter: 9402bb7acecfSBarry Smith . ornt - The orientation (transformation) which will take the source arrangement to the target arrangement 9403b5a892a1SMatthew G. Knepley 9404b5a892a1SMatthew G. Knepley Level: advanced 9405b5a892a1SMatthew G. Knepley 9406bb7acecfSBarry Smith Note: 9407bb7acecfSBarry Smith This function is the same as `DMPolytopeMatchVertexOrientation()` except it errors if not orientation is possible. 9408bb7acecfSBarry Smith 9409*73ff1848SBarry Smith Developer Note: 9410bb7acecfSBarry Smith It is unclear why this function needs to exist since one can simply call `DMPolytopeMatchVertexOrientation()` and error if none is found 9411bb7acecfSBarry Smith 94121cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMPolytopeMatchVertexOrientation()`, `DMPolytopeGetOrientation()` 9413b5a892a1SMatthew G. Knepley @*/ 9414d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeGetVertexOrientation(DMPolytopeType ct, const PetscInt sourceCone[], const PetscInt targetCone[], PetscInt *ornt) 9415d71ae5a4SJacob Faibussowitsch { 9416b5a892a1SMatthew G. Knepley PetscBool found; 9417b5a892a1SMatthew G. Knepley 9418b5a892a1SMatthew G. Knepley PetscFunctionBegin; 94199566063dSJacob Faibussowitsch PetscCall(DMPolytopeMatchVertexOrientation(ct, sourceCone, targetCone, ornt, &found)); 94207a8be351SBarry Smith PetscCheck(found, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find orientation for %s", DMPolytopeTypes[ct]); 94213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9422b5a892a1SMatthew G. Knepley } 9423012bc364SMatthew G. Knepley 9424012bc364SMatthew G. Knepley /*@C 9425012bc364SMatthew G. Knepley DMPolytopeInCellTest - Check whether a point lies inside the reference cell of given type 9426012bc364SMatthew G. Knepley 942720f4b53cSBarry Smith Not Collective 9428012bc364SMatthew G. Knepley 9429012bc364SMatthew G. Knepley Input Parameters: 9430bb7acecfSBarry Smith + ct - The `DMPolytopeType` 9431012bc364SMatthew G. Knepley - point - Coordinates of the point 9432012bc364SMatthew G. Knepley 94332fe279fdSBarry Smith Output Parameter: 9434012bc364SMatthew G. Knepley . inside - Flag indicating whether the point is inside the reference cell of given type 9435012bc364SMatthew G. Knepley 9436012bc364SMatthew G. Knepley Level: advanced 9437012bc364SMatthew G. Knepley 94381cc06b55SBarry Smith .seealso: [](ch_dmbase), `DM`, `DMPolytopeType`, `DMLocatePoints()` 9439012bc364SMatthew G. Knepley @*/ 9440d71ae5a4SJacob Faibussowitsch PetscErrorCode DMPolytopeInCellTest(DMPolytopeType ct, const PetscReal point[], PetscBool *inside) 9441d71ae5a4SJacob Faibussowitsch { 9442012bc364SMatthew G. Knepley PetscReal sum = 0.0; 9443012bc364SMatthew G. Knepley PetscInt d; 9444012bc364SMatthew G. Knepley 9445012bc364SMatthew G. Knepley PetscFunctionBegin; 9446012bc364SMatthew G. Knepley *inside = PETSC_TRUE; 9447012bc364SMatthew G. Knepley switch (ct) { 9448012bc364SMatthew G. Knepley case DM_POLYTOPE_TRIANGLE: 9449012bc364SMatthew G. Knepley case DM_POLYTOPE_TETRAHEDRON: 9450012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) { 94519371c9d4SSatish Balay if (point[d] < -1.0) { 94529371c9d4SSatish Balay *inside = PETSC_FALSE; 94539371c9d4SSatish Balay break; 94549371c9d4SSatish Balay } 9455012bc364SMatthew G. Knepley sum += point[d]; 9456012bc364SMatthew G. Knepley } 94579371c9d4SSatish Balay if (sum > PETSC_SMALL) { 94589371c9d4SSatish Balay *inside = PETSC_FALSE; 94599371c9d4SSatish Balay break; 94609371c9d4SSatish Balay } 9461012bc364SMatthew G. Knepley break; 9462012bc364SMatthew G. Knepley case DM_POLYTOPE_QUADRILATERAL: 9463012bc364SMatthew G. Knepley case DM_POLYTOPE_HEXAHEDRON: 9464012bc364SMatthew G. Knepley for (d = 0; d < DMPolytopeTypeGetDim(ct); ++d) 94659371c9d4SSatish Balay if (PetscAbsReal(point[d]) > 1. + PETSC_SMALL) { 94669371c9d4SSatish Balay *inside = PETSC_FALSE; 9467012bc364SMatthew G. Knepley break; 94689371c9d4SSatish Balay } 94699371c9d4SSatish Balay break; 9470d71ae5a4SJacob Faibussowitsch default: 9471d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Unsupported polytope type %s", DMPolytopeTypes[ct]); 9472012bc364SMatthew G. Knepley } 94733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9474012bc364SMatthew G. Knepley } 9475adc21957SMatthew G. Knepley 9476adc21957SMatthew G. Knepley /*@ 9477adc21957SMatthew G. Knepley DMReorderSectionSetDefault - Set flag indicating whether the local section should be reordered by default 9478adc21957SMatthew G. Knepley 9479adc21957SMatthew G. Knepley Logically collective 9480adc21957SMatthew G. Knepley 9481adc21957SMatthew G. Knepley Input Parameters: 9482adc21957SMatthew G. Knepley + dm - The DM 9483adc21957SMatthew G. Knepley - reorder - Flag for reordering 9484adc21957SMatthew G. Knepley 9485adc21957SMatthew G. Knepley Level: intermediate 9486adc21957SMatthew G. Knepley 9487adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetDefault()` 9488adc21957SMatthew G. Knepley @*/ 9489adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetDefault(DM dm, DMReorderDefaultFlag reorder) 9490adc21957SMatthew G. Knepley { 9491adc21957SMatthew G. Knepley PetscFunctionBegin; 9492adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9493adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetDefault_C", (DM, DMReorderDefaultFlag), (dm, reorder)); 9494adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9495adc21957SMatthew G. Knepley } 9496adc21957SMatthew G. Knepley 9497adc21957SMatthew G. Knepley /*@ 9498adc21957SMatthew G. Knepley DMReorderSectionGetDefault - Get flag indicating whether the local section should be reordered by default 9499adc21957SMatthew G. Knepley 9500adc21957SMatthew G. Knepley Not collective 9501adc21957SMatthew G. Knepley 9502adc21957SMatthew G. Knepley Input Parameter: 9503adc21957SMatthew G. Knepley . dm - The DM 9504adc21957SMatthew G. Knepley 9505adc21957SMatthew G. Knepley Output Parameter: 9506adc21957SMatthew G. Knepley . reorder - Flag for reordering 9507adc21957SMatthew G. Knepley 9508adc21957SMatthew G. Knepley Level: intermediate 9509adc21957SMatthew G. Knepley 9510adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()` 9511adc21957SMatthew G. Knepley @*/ 9512adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetDefault(DM dm, DMReorderDefaultFlag *reorder) 9513adc21957SMatthew G. Knepley { 9514adc21957SMatthew G. Knepley PetscFunctionBegin; 9515adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9516adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9517adc21957SMatthew G. Knepley *reorder = DM_REORDER_DEFAULT_NOTSET; 9518adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetDefault_C", (DM, DMReorderDefaultFlag *), (dm, reorder)); 9519adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9520adc21957SMatthew G. Knepley } 9521adc21957SMatthew G. Knepley 9522adc21957SMatthew G. Knepley /*@C 9523adc21957SMatthew G. Knepley DMReorderSectionSetType - Set the type of local section reordering 9524adc21957SMatthew G. Knepley 9525adc21957SMatthew G. Knepley Logically collective 9526adc21957SMatthew G. Knepley 9527adc21957SMatthew G. Knepley Input Parameters: 9528adc21957SMatthew G. Knepley + dm - The DM 9529adc21957SMatthew G. Knepley - reorder - The reordering method 9530adc21957SMatthew G. Knepley 9531adc21957SMatthew G. Knepley Level: intermediate 9532adc21957SMatthew G. Knepley 9533adc21957SMatthew G. Knepley .seealso: `DMReorderSectionGetType()`, `DMReorderSectionSetDefault()` 9534adc21957SMatthew G. Knepley @*/ 9535adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionSetType(DM dm, MatOrderingType reorder) 9536adc21957SMatthew G. Knepley { 9537adc21957SMatthew G. Knepley PetscFunctionBegin; 9538adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9539adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionSetType_C", (DM, MatOrderingType), (dm, reorder)); 9540adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9541adc21957SMatthew G. Knepley } 9542adc21957SMatthew G. Knepley 9543adc21957SMatthew G. Knepley /*@C 9544adc21957SMatthew G. Knepley DMReorderSectionGetType - Get the reordering type for the local section 9545adc21957SMatthew G. Knepley 9546adc21957SMatthew G. Knepley Not collective 9547adc21957SMatthew G. Knepley 9548adc21957SMatthew G. Knepley Input Parameter: 9549adc21957SMatthew G. Knepley . dm - The DM 9550adc21957SMatthew G. Knepley 9551adc21957SMatthew G. Knepley Output Parameter: 9552adc21957SMatthew G. Knepley . reorder - The reordering method 9553adc21957SMatthew G. Knepley 9554adc21957SMatthew G. Knepley Level: intermediate 9555adc21957SMatthew G. Knepley 9556adc21957SMatthew G. Knepley .seealso: `DMReorderSetDefault()`, `DMReorderSectionGetDefault()` 9557adc21957SMatthew G. Knepley @*/ 9558adc21957SMatthew G. Knepley PetscErrorCode DMReorderSectionGetType(DM dm, MatOrderingType *reorder) 9559adc21957SMatthew G. Knepley { 9560adc21957SMatthew G. Knepley PetscFunctionBegin; 9561adc21957SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9562adc21957SMatthew G. Knepley PetscAssertPointer(reorder, 2); 9563adc21957SMatthew G. Knepley *reorder = NULL; 9564adc21957SMatthew G. Knepley PetscTryMethod(dm, "DMReorderSectionGetType_C", (DM, MatOrderingType *), (dm, reorder)); 9565adc21957SMatthew G. Knepley PetscFunctionReturn(PETSC_SUCCESS); 9566adc21957SMatthew G. Knepley } 9567